LOCUS       DATDDI010000001         1906 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_104060, whole genome shotgun sequence.
ACCESSION   DATDDI010000001 DATDDI010000000
VERSION     DATDDI010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104060"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIU37_00005"
     CDS             <1..324
                     /locus_tag="VIU37_00005"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6012347.1"
                     /translation="HHAGDGTTWQYLPDGEAVGIPYRTLVVRDAANVLVAGRCFSATH
                     DAHASVRSMAQCMAMGQAAGTAAAHAVASGGDPRDIDVAALRDRLRADGAILELAAAP
                     RAMAR"
     gene            321..1277
                     /locus_tag="VIU37_00010"
     CDS             321..1277
                     /locus_tag="VIU37_00010"
                     /inference="COORDINATES: protein motif:HMM:NF014212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012348.1"
                     /translation="MSFVRTVLGDIDPSELGVTYAHEHLIIDGGRPVQMVPDFDLGDV
                     DAMAVEVSAAVKLGLRSVVDAMPCDAGRSAEKLAELARRTGIHVIAPTGLHHDRYYGP
                     THWSARITVDELAELFALDVTDGIDAYDYAGPVVRRTPHRAGVIKVAGSENGPSDRDR
                     RVFEAAAEAHRRTGVPILTHCEGGTGALEQIRLLADHGVDLSHVVVSHVDKIVDRGYH
                     REILATGALAEYDQGFRWGDLPNGTIRLLTWMAEDGLGGQIVLGMDAARRRYYLVFGG
                     APGLGWLLGGLIPMLATAGLDTGVRHALLVDNPARAYAFARP"
     gene            1301..>1906
                     /locus_tag="VIU37_00015"
     CDS             1301..>1906
                     /locus_tag="VIU37_00015"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6012349.1"
                     /translation="MDGHSITMLGTGLIADFYTNTLHGQRGRDQVRVVYSRSEARGVD
                     FSRRWSIPEHTTDLAAAIEHPDTDVVVIGLPNFLHEEAMGLVARAGKAVLCTKPLGRT
                     AAEAKRMLDTVERAGIFAGYLEDLCYTPKTLKAVKAVEAGAVGEVTWVRSRETHPGPH
                     SAWFWDGRLTGGGAIVDLGCHCIEIIRNFVGKGNRPVEVLCH"
BASE COUNT          283 a          692 c          667 g          264 t
ORIGIN      
        1 caccacgcgg gcgacggcac gacctggcag tacctccccg acggcgaggc ggtcggcatc
       61 ccataccgga cgctcgtcgt gcgcgatgcg gccaacgtcc tcgtcgccgg ccgctgcttc
      121 agcgcgacgc acgacgccca cgcgtccgtc cggagcatgg cccagtgcat ggcgatgggc
      181 caggccgccg ggaccgcggc cgcccacgcg gtcgcctccg gcggcgaccc gcgtgacatc
      241 gacgtcgccg cgctccgcga ccggctgcgc gcggacggag caatcctgga gctggccgcg
      301 gctccccggg cgatggcgcg atgagcttcg tccggacggt cctcggcgac atcgatccgt
      361 ccgagctggg cgtgacctac gcgcacgagc acctgatcat cgacggcggc cgcccggtcc
      421 agatggtccc cgacttcgat ctcggcgacg tcgacgcgat ggccgtcgag gtgtccgcgg
      481 cggtcaagct cgggctgcgg tcggtcgtcg acgccatgcc gtgtgacgcc ggacggagcg
      541 ccgagaagct cgccgagctg gcgcgtcgca cggggatcca cgtgatcgcg ccgacggggc
      601 tccatcacga ccgctactac ggcccgacgc attggagcgc caggatcacg gtcgacgagc
      661 tggccgagct gttcgccctg gacgtcaccg acgggatcga cgcgtacgac tacgccggtc
      721 ccgtcgtccg ccggaccccg caccgcgccg gtgtcatcaa ggtcgccggg agcgagaacg
      781 gaccgtccga ccgggaccgc cgggtcttcg aggcggcggc cgaggcgcac cggcggactg
      841 gtgtgcccat cctcacgcac tgcgagggcg ggaccggcgc cctcgagcag atccgcctgc
      901 tggccgatca cggcgtggac ctgtcgcacg tggtcgtcag ccacgtcgac aagatcgtgg
      961 atcgcggcta ccaccgcgag atcctggcga cgggcgcgct ggccgagtac gaccagggat
     1021 tccgctgggg cgacctcccc aacgggacga tccggctgct gacctggatg gccgaggacg
     1081 gactcggcgg ccaaatcgtc ctgggcatgg acgcggcccg tcgccgctac tacctggtct
     1141 tcggtggtgc gccggggctg ggctggctgc tcggcggcct catcccgatg ctggccacgg
     1201 ccggtctcga caccggggtc cgccacgcgc tcctcgtcga caaccccgcc cgagcctacg
     1261 ccttcgcccg cccgtagccc ccgagaggag aggaacgttg atggacggcc actcgatcac
     1321 gatgctcggc accggcctga tcgccgactt ctatacgaac acgctccatg gccagcgcgg
     1381 acgggaccag gtccgggtcg tctactcgag gagcgaggct cgcggcgtcg acttcagccg
     1441 gcgctggtcg atcccggaac acacgaccga cctggccgcc gcgatcgagc atcccgacac
     1501 cgacgtggtc gtgatcggcc tgccgaactt cctccacgag gaggcgatgg ggctcgtggc
     1561 cagggccggc aaggccgtgc tgtgcacgaa gccgctcggt cggaccgccg cggaggcaaa
     1621 gcgcatgctc gacaccgtcg agcgcgccgg catcttcgcg ggctacctcg aggacctctg
     1681 ctatacgccc aagacgctca aggcggtaaa ggccgtcgag gccggcgccg tcggcgaagt
     1741 tacgtgggtc cgctcacgcg agacccaccc gggcccgcat tcggcctggt tctgggacgg
     1801 ccggctgaca ggcggcggtg cgatcgtcga cctgggttgc cactgcatcg agatcattcg
     1861 caacttcgtg ggcaagggca accggcccgt tgaagtgctc tgccac
//
LOCUS       DATDDI010000002         2558 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_41679, whole genome shotgun sequence.
ACCESSION   DATDDI010000002 DATDDI010000000
VERSION     DATDDI010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41679"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..670
                     /locus_tag="VIU37_00020"
     CDS             <1..670
                     /locus_tag="VIU37_00020"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012350.1"
                     /translation="QTASLYPKLTVVEVIDLFRSFYPRARPTEELVGALELGERRNAQ
                     TRELSGGQRQRLAVALALVNDPEIVFLDEPTTGLDPAARRSLWDLIRGLKAAGRTVLL
                     TTHYMEEAEILCDRLAIMDHGHILEMGTVDELVSKHYQQRAVHFDSVAALSADDLRTL
                     PGVGSVKHDADETLLYTSDVATTIGALLSLADARDVDPQNLGVRRATLEDVFLDLTGR
                     ALRD"
     gene            690..1781
                     /locus_tag="VIU37_00025"
     CDS             690..1781
                     /locus_tag="VIU37_00025"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6012351.1"
                     /translation="MNALLTLTLANIRSYVRDRAALFWTLAFPLVFIVMFGLIFQGGG
                     SRLTLGWADTDRSPAAIQLREAFAKQAGVTLVETSRDDALEQMKVGKVDAVIAVPAGY
                     GQALAASAAAGGGVPTSITVYTDPSRSALVGEVYQAVGSVLGVVNLGGRPPLVIPDAR
                     TFQTENLNAISYFVPSMLGLSVMQVGIFAAIPLVGDREKLILKRLAATPLRRWQLIGS
                     NVLMRLLIALAQTVIIVVVGTAAFGVQITGNLLLVGGFVMLGAVTFLSLGYVIASFAN
                     TEDSANGMTSMIQFPMMFLSGAFFQIDQMPQFLQVVARAIPLTYLADALRQVMVGGAA
                     FAPLWTCFAVLAGWLVVCFAIASRKFRWQ"
     gene            complement(1786..2316)
                     /locus_tag="VIU37_00030"
     CDS             complement(1786..2316)
                     /locus_tag="VIU37_00030"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY6012352.1"
                     /translation="MDDDPVWHAIATKRAIRAFSTEPLAPADLDRILDAGRHAGSSKN
                     LQRWTFIVCRDRGHLAELSTLGPWAGHLAGAAVGVALVTPDPRVADAPLSILFDLGQA
                     AANMMLAAWELGIGSVPATVYDHDRARELLGYPADQRCEYLLSFGYPADRDRLTRPLK
                     PGGRRSLGEIVREERW"
     gene            complement(2358..>2558)
                     /locus_tag="VIU37_00035"
     CDS             complement(2358..>2558)
                     /locus_tag="VIU37_00035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012353.1"
                     /translation="LDPADAGDIAAATPAERIPDGEARFEAIAETPGGVRTLVRVALP
                     GATRPPVRAEASPDVAALAGEP"
BASE COUNT          345 a          928 c          900 g          385 t
ORIGIN      
        1 ccagacggcg tcgctctacc cgaagctgac cgtggtcgag gtcatcgacc tgttccgcag
       61 cttctatccg cgcgcccggc cgaccgagga gctcgtcggc gcactcgagc tcggcgaacg
      121 ccggaacgcg cagacgaggg agctgtccgg cgggcagcgg cagcgcctgg ccgtggcgct
      181 cgcgctggtc aacgacccgg agatcgtgtt cctcgacgag ccgacgaccg gtctcgatcc
      241 cgccgcccgc cggtcgctgt gggacctgat ccgcgggctc aaggcggccg gccggaccgt
      301 gctcctgacc acccactaca tggaggaggc cgagatcctg tgcgaccggc tggcgatcat
      361 ggaccacggc cacatcctcg agatgggcac ggtcgacgag ctggtctcga agcactacca
      421 gcagcgtgcc gtccacttcg acagcgtcgc cgcgctgtcc gcggacgacc ttcgaacgct
      481 gcccggggtc ggctcggtca agcacgacgc cgacgagacg ctgctctaca ccagcgacgt
      541 ggccacgacg atcggagcgc tgctgagcct ggccgatgcg cgcgacgtcg atccgcagaa
      601 cctgggcgtc cgccgcgcga cgctcgaaga cgtcttcctc gatctgaccg gccgggcgct
      661 gcgcgactga ggggagagtc gaccgaccga tgaacgcgct gctgaccctc acgcttgcca
      721 acatccggag ctacgtccgg gaccgggcgg cgctcttctg gacactggcg ttcccgctcg
      781 tgttcatcgt gatgttcggg ctcatcttcc agggcggcgg atcacgcctg acgctcggct
      841 gggccgacac cgaccggagc ccggccgcca tccagctccg cgaggcgttc gccaaacagg
      901 ccggcgtgac cctcgtcgag acgtcgcgcg acgatgccct cgagcagatg aaggtcggca
      961 aggtcgacgc ggtcatcgcc gtcccggccg gctacgggca ggcgctcgcc gcctcggccg
     1021 ccgccggcgg cggggtgccc acctcgatca cggtctacac ggacccgtcg aggtcggcgc
     1081 tcgtcggcga ggtgtaccag gccgtcggca gcgtgctcgg cgtggtcaac ctcggcggcc
     1141 ggccgccgct cgtgatcccc gacgcccgga cgttccagac cgagaacctc aacgcgatca
     1201 gctacttcgt cccgagcatg ctcggcctgt ccgtgatgca ggtcgggatc ttcgcggcga
     1261 tcccgctggt cggcgatcgc gagaagctga tcctcaagcg gctggcggcg acgcccctgc
     1321 ggcgctggca gctgatcggc agcaacgtgc tcatgcggct gctcatcgca ctggcccaga
     1381 ccgtgatcat cgtggtcgtc gggacggccg ccttcggggt ccagatcacc ggcaacctgc
     1441 tgctcgtcgg cggcttcgtg atgctcggcg cggtgacgtt cctgtcgctc ggctacgtga
     1501 tcgcgtcgtt cgccaatacg gaggactcgg cgaacgggat gaccagcatg atccagttcc
     1561 cgatgatgtt cctctccggc gccttcttcc agatcgacca gatgccgcag ttcctccagg
     1621 tcgtggcccg ggccattccg ctcacgtacc tggccgatgc gctccgccag gtgatggtcg
     1681 gcggggccgc gttcgcgccg ctgtggacct gcttcgcggt cctggccggc tggctggtgg
     1741 tctgcttcgc gatcgcctcg cgcaagttcc gctggcagta gccggctacc agcgttcctc
     1801 gcggacgatc tcgccgaggc tccggcggcc gcccggcttc agcggccggg tgagccggtc
     1861 gcgatccgcc gggtagccga acgacagcag gtactcgcac cgctggtccg ccgggtagcc
     1921 gagcagctcg cgcgcccggt cgtggtcgta cacggtggcg ggcacgctcc cgatcccgag
     1981 ctcccacgcg gccagcatca tgttggccgc cgcctggcca aggtcgaaca ggatggacag
     2041 cggcgcgtcg gcgacccgcg gatccggcgt caccagcgcc acgccgaccg ccgccccggc
     2101 gagatgcccg gcccacggtc cgagggtcga cagctccgcc aggtggccgc ggtcccggca
     2161 gacgatgaag gtccagcgct ggaggttctt gctgctgccg gcgtgccggc ccgcgtcgag
     2221 gatccgatcg aggtcggcgg gggccagcgg ttcagtcgag aaggcgcgga tcgcccgctt
     2281 cgtggcgatg gcatgccaga ccgggtcgtc gtccatgggc cggcgggacc ggcccggcac
     2341 ggcgtcgccc ggaccggtca cggttcgccg gccagggccg cgacgtcggg cgacgcctcg
     2401 gcgcgcacgg gcggccgggt ggctcccggc aacgcgaccc ggacgagcgt ccggacgccg
     2461 cccggagtct ccgcgatcgc ctcgaaccga gcctcgccgt cggggatccg ttccgccggc
     2521 gtcgctgcgg cgatgtcgcc ggcgtcggcc gggtcgag
//
LOCUS       DATDDI010000003         4833 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_228995, whole genome shotgun sequence.
ACCESSION   DATDDI010000003 DATDDI010000000
VERSION     DATDDI010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4833
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228995"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(288..788)
                     /locus_tag="VIU37_00040"
     CDS             complement(288..788)
                     /locus_tag="VIU37_00040"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEY6012354.1"
                     /translation="MADLYEVLQVHRHAELDVIRAAYRALARKHHPDFGGDGARMVAI
                     NDAWRVLSDREARAAYDAQLATSQARRSSDRMVPGPIAGYAPSPARSAPAAPGNDGTI
                     IDFGRYAGWSVGKLVEHDPDYLEWLARTPIGRRLANEIEGVLARRASQFEALRPTGTT
                     GRRGRR"
     gene            complement(867..1037)
                     /locus_tag="VIU37_00045"
     CDS             complement(867..1037)
                     /locus_tag="VIU37_00045"
                     /inference="COORDINATES: protein motif:HMM:NF016811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HEY6012355.1"
                     /translation="MAIEQDPVCGMAVDTSTSELSFEYEGTIYWFCGKGCLLEFRDDP
                     ERFLAPDYTPSM"
     gene            1117..1461
                     /locus_tag="VIU37_00050"
     CDS             1117..1461
                     /locus_tag="VIU37_00050"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HEY6012356.1"
                     /translation="MDPTERELARARLLAERARLLEEIDEAVALPEQMTYGSQAAAAT
                     QVFEQERELAMRERANLHLQAVDGALARLDDGTYGTCVRCGRPIAAARLEALPWAAHC
                     IECQTIVDRGRR"
     gene            1458..2462
                     /locus_tag="VIU37_00055"
     CDS             1458..2462
                     /locus_tag="VIU37_00055"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HEY6012357.1"
                     /translation="MTGATRDDLVTIEAIRGAAATLRGVAVRTPLVAFGDPADRRFLK
                     AESLQPIGAFKLRGAYVAIASLGADERARGVITYSSGNHAQGVARAARLLGTRAVVVM
                     PSDAPVIKRERVEADGAEIVVVGTASDERQRVAETLAAEHGLSIIPPFDDDRIIAGQG
                     TVGLELVEDLADLSCVLVPVGGGGLASGVATAIKALRPSVRVIGVESELAADARESLE
                     RGEVVRWPAELVSRTIADGTRTQSLGHRTFAHLRAHLDGIVTVTEAEIAGAVRLAAEQ
                     CRLVAEPSGALSLAAMAFHAGELGLTGTPGAVVAVISGGNVDPARYRELLASPVPPRG
                     "
     gene            complement(2488..3513)
                     /locus_tag="VIU37_00060"
     CDS             complement(2488..3513)
                     /locus_tag="VIU37_00060"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEY6012358.1"
                     /translation="MVRQASIRRAVAALATFAVASVFAAPVLAHGLVPGEAPTIPSLL
                     LDWTFEPLPALGIAAATAWWLWAVRRVNSLHPANPVPPGRTVAFLAAMAALAFAMVSG
                     VARYDTTLFSVHMVQHVLLMLVAAPFIALSAPITLVLRLASSSTRRRWILPVLNSRVV
                     RFLTFPVTDWIIFSGVMWASHFSPLFNAALEDPLIHYVEHALFLSTALLFWWPAVGMD
                     PSPWRMGHPVRIVHVFLQMTQNTFLAVVILNVPTVLYAHYATLTRPWGPSPIDDQRLA
                     AGIMWLAGDLIFLTAIMVLVAGWMRAEGQTTARADRQAEIDLARIRIRERALAERLAG
                     ERGDPRA"
     gene            3691..4815
                     /gene="coxB"
                     /locus_tag="VIU37_00065"
     CDS             3691..4815
                     /gene="coxB"
                     /locus_tag="VIU37_00065"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEY6012359.1"
                     /translation="MAVVVIVLELLAVVAGVDFPKAGQAFVTSLYPPVAVTEQGARVR
                     ELYTIVFAIAVVIFFLVEGLILWTVLRYRRSPGDDALPPQTHGNNVAELAWTIIPTII
                     VAFLFVISWQTLNQVDTVSASPQTKIRAVAGQFQWQFDYLADDGKTVTYTQNLASGEG
                     GGLYVPAGRDIQLSLTSKDVIHAFYVPQFLFKRDVVPGRVNMFDFKVDAADAGQTFRG
                     QCAELCGTGHRIMLFEVHALSPSDFDAWLADAIAKASATPAPAPSAAPGASGQPAPSG
                     GQASGPTLQVSAANIAFEQASLEAPANTPFAIEFENKDAGVPHNVAIHKDSPSGQEMF
                     KGDIFNGPDKRTYSVPALPAGTYAFVCSVHPNMSGTLTVK"
BASE COUNT          727 a         1710 c         1737 g          659 t
ORIGIN      
        1 gatccagccg cggtggccgg cgccaggacc tgagccgtca gaaccacttg tggccgtcca
       61 ccagggcggc accgagcgcg gccagcgtca cgagcacgcg catgatggcg aacatcggac
      121 cggtacgaac gggcatccgg agcggcatct ggcacctccc cggccgcgag ggccggtgaa
      181 ccctggcggc gaacccctcc gaggagtgcc cggtccgtca gcgccgtccc gaagtgtcgc
      241 gaccgccgct tagctgcggc ttatcgggtc cgcgatcccg cgccgggtca gcgccgcccg
      301 cgccgtcccg tggtgccggt cggacggagc gcctcgaact ggcttgcccg ccgggccagc
      361 accccctcga tctcgttcgc gagccgccgg ccgatcggcg tgcgggccag ccactcgaga
      421 tagtcggggt cgtgctccac gagcttgccg accgaccagc cggcgtagcg gccgaagtcg
      481 atgatcgtgc cgtcgttccc gggcgccgcc ggcgcgctgc gagccgggct gggcgcatag
      541 cccgcgatcg ggccgggcac catgcggtcg gaggagcggc gcgcctgcga ggtcgcgagc
      601 tgggcgtcgt aggctgcccg ggcctcgcgg tcgctcagga cccgccacgc gtcgttgatc
      661 gcgaccatcc gggcgccatc acccccgaag tcgggatgat gcttcctggc cagcgcccga
      721 tacgccgctc gaatgacatc gagctcggca tgacggtgga cctggagcac ctcgtagagg
      781 tcagccatgc ccgtaccgta ccgagcgctg ccgccaccgg aaccaccctg aatgggggac
      841 cgacgcgcag tcgatagtcc cgcccgctac atcgacggcg tgtagtccgg cgccaggaac
      901 cgctccgggt cgtcgcggaa ctccagcagg cagcccttgc cgcagaacca gtagatcgtg
      961 ccctcgtact cgaacgacag ctcgctggtc gacgtgtcga ccgccatgcc gcacacggga
     1021 tcctgctcga tggccatggt gctcctcggc tgctggtact cccagggagt atatccggaa
     1081 cgtgcggaac cgccgtccgg cgcgtacagt cagccgatgg atccgaccga acgcgaactc
     1141 gcccgagcca ggctcctggc cgagcgcgcg cggctgctgg aggagatcga cgaggcggtc
     1201 gcgctgccgg agcagatgac ctacgggtcg caggcggccg cggccaccca ggtcttcgag
     1261 caggagcgcg agctggccat gcgcgaacgc gcgaacctcc atctccaggc cgtcgacggc
     1321 gcgctggcga ggctcgacga cggcacctac gggacgtgcg ttcgctgcgg gcggccgatc
     1381 gcggccgcgc ggctggaggc gctgccgtgg gctgctcact gcatcgagtg ccagaccatc
     1441 gtcgaccggg ggcgccgttg accggcgcga cgcgggacga cctcgtcacg atcgaggcca
     1501 tccgcggcgc ggcggcgacg ctgcgcggtg tcgccgtccg gaccccgctc gtcgcgttcg
     1561 gggatccggc cgaccgccgc ttcctgaagg ccgaatcgct ccagcccatc ggggccttca
     1621 agctccgcgg cgcgtacgtg gccatcgcgt cgctgggcgc ggacgagcgg gcgcgaggcg
     1681 tgatcaccta ctcgtcaggc aaccacgccc agggcgtcgc ccgggccgcg cgcctgctcg
     1741 gcacccgggc cgtggtcgtg atgccgtccg acgccccggt catcaagcgc gagcgggtcg
     1801 aggccgacgg cgccgagatc gtggtcgtcg ggaccgccag tgacgagcgc cagcgcgtcg
     1861 ccgagaccct cgcggcggag cacgggctgt cgatcatccc gccgttcgac gacgaccgga
     1921 tcatcgccgg ccagggcacg gtcggtctcg agctcgtgga ggacctcgcc gacctgtcgt
     1981 gcgtgctggt gccggtcggt ggcggcgggc tggccagcgg cgtcgccacc gcgatcaagg
     2041 cgctcaggcc gtcggtccgg gtgatcggcg tggaatccga gctggcggcc gacgcccgcg
     2101 agtcgctgga gcgtggcgag gtcgtccgct ggccggccga gctggtgtcg cggacgatcg
     2161 ccgacggcac ccggacgcag tccctcggcc accgaacgtt cgctcacctc cgcgcccact
     2221 tggacggcat cgtcaccgtc accgaggccg agatcgcggg cgcggtgcgc ctggccgccg
     2281 agcagtgccg gctggtcgcg gagccgtcgg gggcgctgag cctggcggcg atggcgttcc
     2341 acgccggcga gctcggcctg accggcacgc ccggggccgt ggtcgcggtg atcagcgggg
     2401 gcaacgtcga tccggcgcgc taccgcgagc tgctggcgtc gccggtcccg ccgcgcggtt
     2461 aggccgggaa ggacccgccg ggccggatca cgcccgcggg tcgccgcgct cgccggcgag
     2521 ccgttcggcc agggcccgct cgcggatgcg gatccgggcg agatcgatct cggcctggcg
     2581 gtcggcccgg gccgtggtct gtccctccgc gcgcatccag ccggcgacga ggaccatgat
     2641 cgcggtcagg aagatgaggt cgccggccag ccacatgatc ccggcggcca gccgctggtc
     2701 gtcgatcggg ctcgggcccc acggccgggt gagcgtggcg tagtgcgcgt acagcacggt
     2761 cggcacgttg aggatgacga ccgccaggaa cgtgttctgg gtcatctgca ggaacacgtg
     2821 gacgatccgc accgggtgac ccatccgcca gggcgacgga tccatgccca cggcgggcca
     2881 ccagaacagg agcgccgtgg acaggaacag cgcgtgctcg acgtagtgga tcagcgggtc
     2941 ctcgagtgcg gcgttgaaga gcggcgagaa atggctcgcc cacatgacgc cggagaagat
     3001 gatccagtcg gtgacgggga aggtcaggaa gcggacgacg cgcgagttca gcaccggcag
     3061 gatccagcgc cggcgcgtcg acgacgacgc gagccggagg accagcgtga tcggcgccga
     3121 cagggcgatg aacggcgccg cgacgagcat cagcaggacg tgctggacca tgtggaccga
     3181 gaacagcgtg gtgtcgtagc gagccacccc cgagaccatg gcgaacgcca gcgcggccat
     3241 tgccgccagg aaggcgactg tccggccggg tggcacgggg tttgccggat ggagcgagtt
     3301 gacccgccgg accgcccaca gccaccacgc cgtcgcggcg gcgatgccga gcgccggcag
     3361 gggttcgaat gtccagtcca ggagcagtga cgggatcgtg ggcgcctcgc cgggcacgag
     3421 gccgtgggcc aggacggggg ccgcgaagac gctcgcgacc gcgaacgttg cgagcgccgc
     3481 aacagcacgg cggatcgaag cctgtctgac catgtgcgca tcctcgcacg aacggagttc
     3541 cgggtagaat gtcgccggtt cggccccggg ggtcgacacc gcacgctctg atcggtcgtc
     3601 acgctccgtc cacgcgcgca ccacccctcg aggacgttga tgtcgatttc cccacgaaca
     3661 cgccactcgc tggccacggc ggtcgctgcc gtggctgtcg tggtgatcgt gctggaactg
     3721 ctggcggtgg tcgccggggt ggacttcccg aaagcgggcc aggcgttcgt gacctcgctg
     3781 tatccgccgg tcgccgtcac cgagcagggc gcccgggttc gcgagctcta cacgatcgtg
     3841 ttcgcgatcg cggtcgtgat cttcttcctc gtcgaggggt tgatcctgtg gacggtgctc
     3901 cgctaccggc gctcgccggg cgatgatgcc cttccgcccc agacgcacgg caacaacgtg
     3961 gccgagcttg cctggacgat catccccacg atcatcgtcg cgttcctgtt cgtgatctca
     4021 tggcagaccc tcaaccaggt cgacaccgtc tcggcgagcc cgcagacgaa gatccgggcg
     4081 gtcgccggcc agttccagtg gcagttcgac tacctggccg acgacggcaa gaccgtcacg
     4141 tacacgcaga acctcgcgtc gggcgagggc ggcggcctgt acgtgccggc cgggcgggac
     4201 atccagctgt cgctgacgag caaggacgtc atccacgcct tctacgtccc ccagttcctg
     4261 ttcaagcgcg acgtggttcc gggccgggtg aacatgttcg acttcaaggt cgacgccgcc
     4321 gatgccggcc agacgttccg gggccaatgc gccgagctgt gcggcaccgg ccaccggatc
     4381 atgctgttcg aggtccacgc gctgtcgccg tctgacttcg acgcctggct cgccgatgcg
     4441 atcgccaagg ccagcgcgac gcccgcaccc gccccgagcg cggcgccggg agccagcggc
     4501 cagcccgcgc cgagcggcgg acaggccagc gggccgacgc tgcaggtcag cgccgccaac
     4561 atcgccttcg agcaggcgag cctggaggct ccggcgaaca cgccgttcgc gatcgagttc
     4621 gagaacaagg acgccggcgt tccccacaac gtcgcgatcc acaaggactc gccgtccggc
     4681 caggagatgt tcaaggggga catcttcaac gggcccgaca agcgcacgta cagcgtgccg
     4741 gccctccccg ccggcacgta cgccttcgtc tgcagcgtcc accccaacat gtccggcacc
     4801 ttgacggtca agtaaggagc ctcgatggcg acg
//
LOCUS       DATDDI010000004         2970 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_686886, whole genome shotgun sequence.
ACCESSION   DATDDI010000004 DATDDI010000000
VERSION     DATDDI010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_686886"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1184
                     /locus_tag="VIU37_00070"
     CDS             <1..1184
                     /locus_tag="VIU37_00070"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF009686.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEY6012360.1"
                     /translation="WPVNVGLQAGARSEDDGPLEALLDAGACGFKIHEDYGAHPELID
                     HLLRFADVHDVSVSLHTDGLHESAELEDTVAAIAGRTVHAYHVEGTGGGHVPDLLGLV
                     REPNILCSSTTPTIPFGVNAVAEGLPMIVLNHGASFAIPDDLALIRERVHPATMAAEG
                     PLHELGAIGIVNSDSQGMGRIMETFRRTIQLAHVMRAWRSTPAGAGHPGLPADPDDPF
                     DSTDRVLRYLAKVTIEPAIAHGIAAHVGALTAGRLADIVLWKPAWFGVKPELVLKAGY
                     PAWAPLGEGNATVERAEPTRYRPDWGGAGPVARRLSVTFVSGRAAGRPEIAARLAAGG
                     RDLIAVEGTRRLTRDALARNRATAPVEVDPGDGRVTLAGRPLEVEPVADLPLNRRYWL
                     R"
     gene            complement(1188..2009)
                     /locus_tag="VIU37_00075"
     CDS             complement(1188..2009)
                     /locus_tag="VIU37_00075"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6012361.1"
                     /translation="MKAGFLVTTGDPATAAELASEAEAAGWDGVFYWDGVAIPDVEIY
                     DPWVVMAAMAMRTERVRLGAIVTPPSRRRPWKLARETMTLDRLSNGRLVLPVGLGALD
                     DGAFGNVGEPTEARIRAELLDESLAILEGLWSGEAYGHEGRHYRFGPMTFRPTPVQQP
                     RIPIWVVGAWPIERSVRRALRFDGILPQTNDPAQVRALAAFIAGQRPSAPGDRPFEIV
                     VDGTTPLEAAGASAAVRPLAEAGATWWIESDWTGATVDSLRRRIEAGPPNVDDDR"
     gene            complement(2006..>2970)
                     /locus_tag="VIU37_00080"
     CDS             complement(2006..>2970)
                     /locus_tag="VIU37_00080"
                     /inference="COORDINATES: protein motif:HMM:NF017365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proline racemase family protein"
                     /protein_id="HEY6012362.1"
                     /translation="GKTMFDKMQWLQAHRDDLRLRMLREPRGYPAANCNLLLPPTDPT
                     ADAGYVIMEQVEYPGMSGTNTICVVTVLLETGILPMQEPVTELTLEAPAGLIRVTADC
                     ADGKVRGVTFRNVPAFATHLDTPVEVPHLGTVRVDVAYGGMFYVIAEAEGFGLRLTPD
                     EGADIVRISEMIKAAAADQLPVVHPDQPGFAGITIAQLSGPPHDPANDARNVVTVSTG
                     ELDWDRPATWTGAIDRSPCGTGTSARMAVLHAKGCLRVGDTFRHEGILGTVFTGRVLE
                     EAAIGPYRAIVPSITGRAWITGFASYVVDPTDPFPDGFTVGDIW"
BASE COUNT          415 a         1078 c         1058 g          419 t
ORIGIN      
        1 actggccggt caacgtcggc ctccaggccg gtgctcgatc cgaggatgac gggcccctcg
       61 aggcgctcct cgacgccggc gcttgcgggt tcaagatcca cgaggactac ggcgcccacc
      121 ccgagctgat cgatcacctc ctgcgcttcg ccgacgtcca cgacgtgtcg gtctcgctcc
      181 acaccgacgg gctccacgaa tcggccgagc tcgaggacac ggtcgccgcg atcgcgggac
      241 gaacggtcca tgcctaccac gtcgaaggga cgggcggcgg gcacgtgccc gacctgctcg
      301 gcctggtgcg cgagccgaac atcctgtgct cgtcgacgac gccgacgatc ccgttcggcg
      361 tgaacgcggt ggccgagggc ctgccgatga tcgtgctcaa ccatggggcg tcgttcgcga
      421 tccccgatga cctggcgctc atccgcgagc gcgtccaccc ggcgacgatg gccgccgagg
      481 gtccgctcca cgagctcggg gccatcggga tcgtgaactc cgattcgcag gggatggggc
      541 ggatcatgga gacgttccgg cggacgatcc agctcgccca cgtcatgcgc gcctggcggt
      601 cgacgccggc cggcgccggg catcccggcc tgccggccga tccggacgat ccgttcgatt
      661 cgaccgatcg cgtgctccgc tacctggcca aggtcacgat cgagccggcc atcgcccacg
      721 ggatcgccgc ccacgtggga gcgctgacgg ccgggcgcct ggccgacatc gtgctctgga
      781 agccggcctg gttcggggtc aagcccgagc tcgtcctcaa ggcgggctac ccggcctggg
      841 cgccgctcgg cgagggcaac gcgaccgtgg aacgcgccga gccgacccgg taccggccgg
      901 actggggcgg cgcgggaccg gtggcgaggc ggctgtcggt cacgttcgtg tcgggacggg
      961 cggcgggccg cccggagatc gcggcacggc tggccgccgg cggacgcgac ctaatcgcgg
     1021 tcgaggggac ccgccgcctg acccgcgacg cgttggcgcg caaccgcgcc acggcgcccg
     1081 tcgaggtcga tccgggcgac ggtcgagtca cccttgccgg gcggccgctc gaggtcgagc
     1141 cggtcgccga cctgccgctc aaccggcgct actggctgcg ctgaccgtca gcgatcgtcg
     1201 tccacgttcg gcgggcccgc ctcgatccgc cgccggagcg aatcgacggt ggcgcccgtc
     1261 cagtcggatt cgatccacca ggtcgcgccc gcctcggcca gcggccggac cgcggccgac
     1321 gcccctgccg cctcgagggg cgtcgtcccg tcgaccacga tctcgaacgg ccgatcgccc
     1381 ggcgcggatg ggcgttgccc ggcgatgaac gcggcgagcg cccggacctg ggccggatcg
     1441 ttcgtctgcg ggaggatccc gtcgaacctc agtgcgcgcc ggacggaccg ctcgatcggc
     1501 caggcgccca cgacccagat cgggatccgc ggctgctgga ccggcgtggg gcgaaaggtc
     1561 atcgggccga accgatagtg acgaccctcg tgcccgtagg cttcgccgct ccacaggcct
     1621 tcgaggatcg ccagcgattc gtccagcagc tcggcccgga tccgggcctc ggtcggctcg
     1681 ccgacgttcc cgaacgcgcc gtcgtcgagg gctccgagac cgaccggcag gacgagccgg
     1741 ccgttggaca gccggtcgag cgtcatcgtc tcccgggcga gcttccacgg ccgtcgtcga
     1801 gacggcgggg tcacgatggc cccgagccgg acccgttcgg ttcgcatcgc catggcggcc
     1861 atgaccaccc acgggtcgta gatctcgacg tcggggatcg ccacgccgtc ccagtagaag
     1921 acaccgtccc agccggccgc ctcggcctcg gacgcgagct cggcggccgt cgccgggtcg
     1981 ccggtcgtga cgaggaaccc ggccttcacc agatgtcccc gaccgtgaac ccgtccggga
     2041 acgggtcggt cgggtcgacg acatagctcg cgaacccggt gatccaggcc cgaccggtga
     2101 tcgaggggac gatggcgcgg tacggcccga tcgcggcctc ctcgagcacc cgcccggtga
     2161 acaccgtccc gaggatgcct tcgtgccgga acgtgtcgcc gacccgcagg cagcccttcg
     2221 cgtggagcac cgccatccgc gccgacgtcc cggttccgca cggcgaccgg tcgatcgcgc
     2281 ccgtccaggt cgcgggacgg tcccagtcca gctcgccggt cgagaccgtg acgacgttgc
     2341 gagcgtcgtt ggccgggtcg tggggtggtc cggacagctg ggcgatggtg atcccggcga
     2401 accccggctg atcgggatgg acgaccggca actggtcggc ggccgcggcc ttgatcatct
     2461 cgctgatccg gacgatgtcg gcgccctcgt cgggcgtgag ccgcagtccg aagccctcgg
     2521 cctcggcgat cacgtagaac atcccgccat aggcgacatc gacccgaacg gtgccgagat
     2581 ggggcacctc gaccggtgtg tcgagatggg tcgcgaaggc gggcacgttg cggaatgtga
     2641 cgccgcggac cttgccatcg gcgcagtcgg ccgtgacacg gatcagcccg gcgggagcct
     2701 cgagcgtgag ctcggtcacc ggttcctgca tcggcaggat cccggtctcg agcaggaccg
     2761 tcaccacgca tatcgtgttg gtgcccgaca tcccggggta ttcgacctgc tccatgatca
     2821 cgtagcccgc atcggcggtc gggtcggtcg gcggcaggag caggttgcag ttcgccgccg
     2881 gatagccgcg cggttcgcgc agcatccgca gccgcaggtc atcgcggtgc gcctgcagcc
     2941 actgcatctt gtcgaacatc gtcttgcccg
//
LOCUS       DATDDI010000005         1693 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_208255, whole genome shotgun sequence.
ACCESSION   DATDDI010000005 DATDDI010000000
VERSION     DATDDI010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208255"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1296
                     /locus_tag="VIU37_00085"
     CDS             <1..1296
                     /locus_tag="VIU37_00085"
                     /inference="COORDINATES: protein motif:HMM:NF014948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012363.1"
                     /translation="ILSVANWSGEWPGLVGMLNINASLTKMNRAYSSIWSADLTDSFA
                     DDAIVRWLETGAVVHDTSHVHDLDPGRLPASATDTGRRLAGELADRMAILGVFDEGCM
                     GMYNAILDDEYLNPMGIFKERLSQSALVYEMHQVAASEAREAYRWLLDRGMTFRFGAD
                     GSVELTEDQVLDQLRLYVAAMRIADRFGCDAIGIQYQQGLKDVAPASDLAEGLLNDPD
                     RPPVRHAETGRELYAGRALPHFNEVDEGSAVDGLVTNRVWTALGLNPATTLHDVRWGD
                     PFGDDYVWVFEISGAVPPAHLAGGYGGAVSERQPPVYFGQGGGTIKGVSRPGEIVWSR
                     VFIMDGALHADLGRGTVVELPAAETERRWQSTTPQWPIMHAVLHGITRDQMMARHRAN
                     HIQVAYGDDAASADLALQTKAAMFDAMGVRVHLCGVELA"
     gene            complement(1316..>1693)
                     /locus_tag="VIU37_00090"
     CDS             complement(1316..>1693)
                     /locus_tag="VIU37_00090"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY6012364.1"
                     /translation="FRDVFAVLFFVAIGTLVDPSRLGAALPAVGLLLALIVVAKVAVA
                     WLLVRIAGLEVRPFQLAIGLGQIGEFSFVLASAAVAADAIDQVLYVAIITSVAVSIGV
                     SSVAVRLVPRPEGTTPAEAAPAA"
BASE COUNT          265 a          602 c          607 g          219 t
ORIGIN      
        1 atcctgagcg tggccaactg gagcggggag tggccgggcc tcgtcgggat gctcaacatc
       61 aacgcgtcgc tgacgaagat gaaccgggcg tacagctcga tctggagcgc cgacctcacg
      121 gattcgttcg ccgacgacgc gatcgtccgg tggctcgaga cgggcgcggt cgtccacgac
      181 acgtcacacg tccacgacct tgatccgggc cgcctcccgg cctcggccac cgacaccggc
      241 cgccgcctgg ccggcgagct ggccgaccgg atggccatcc tcggcgtgtt cgacgagggc
      301 tgcatgggga tgtacaacgc catcctcgac gacgagtacc tcaacccgat gggcatcttc
      361 aaggagcggc tcagccagtc ggcgctcgtg tacgagatgc accaggtggc cgcctcagag
      421 gcgcgcgagg cgtaccgctg gttgctcgat cgcgggatga cgttccggtt cggcgcggac
      481 gggtcggtcg agctgaccga ggaccaggtc ctcgaccagc tccggctgta cgtcgccgcg
      541 atgcgcatcg ccgaccgctt cggctgcgac gcgatcggga tccagtacca gcaggggctc
      601 aaggacgtcg ccccggcctc cgacctggcc gagggcctgc tcaacgaccc ggatcggccg
      661 ccggtgcgcc acgccgagac gggccgcgag ctctacgccg gtcgcgccct tccgcacttc
      721 aacgaggtcg acgaggggtc ggccgtcgac ggcctcgtca ccaaccgggt ctggacggcg
      781 ctcgggctca acccggcgac gaccctccac gacgtgcgct ggggcgatcc cttcggcgac
      841 gactacgtct gggtcttcga gatctccggt gccgtcccgc cggcgcacct ggccggcggc
      901 tatggcgggg cggtgagcga gcgccagccg cccgtctact tcgggcaggg cggcggcacg
      961 atcaagggcg tcagccggcc cggcgagatc gtctggagcc gcgtgttcat catggacggc
     1021 gcgctgcacg cggacctcgg gcgcggcacc gtggtcgagc ttcccgcggc cgagaccgag
     1081 cggcgctggc agtccacgac gccgcagtgg ccgatcatgc acgcggtcct gcacgggatc
     1141 acgcgcgatc agatgatggc ccgccaccgg gccaaccaca tccaggtcgc gtacggcgac
     1201 gacgccgcgt cggcggacct ggcgctccag accaaggcgg cgatgttcga cgcgatgggc
     1261 gtgcgggtcc acctgtgcgg ggtggagctc gcctgaggtc tccggcgccc cggcgtcagg
     1321 cggcgggggc agcctccgcg ggcgtcgtgc cttccggccg cgggacgagc cggaccgcga
     1381 ccgagctgac gccgatgctg accgcgaccg acgtgatgat cgcgacgtag agcacctggt
     1441 cgatcgcatc ggcggcaacg gcagccgagg cgagcacgaa gctgaactcg ccgatctggc
     1501 cgagaccgat ggccagctgg aacggtcgca cctccagccc ggcgatccgg accagcagcc
     1561 aggcgaccgc gaccttggcc acgacgatga gcgccaggag cagccccacg gccgggagcg
     1621 cggcgccgag ccggctcgga tcgacgagcg tcccgatcgc cacgaagaac agcaccgcga
     1681 agacgtcgcg gaa
//
LOCUS       DATDDI010000006         2028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_333190, whole genome shotgun sequence.
ACCESSION   DATDDI010000006 DATDDI010000000
VERSION     DATDDI010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333190"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..517)
                     /locus_tag="VIU37_00095"
     CDS             complement(<1..517)
                     /locus_tag="VIU37_00095"
                     /inference="COORDINATES: protein motif:HMM:NF013260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon-like protease helical domain-containing
                     protein"
                     /protein_id="HEY6012365.1"
                     /translation="MQAAPATTPDGDASRQLRVAELYRHCPAGDLAFGTTAEVADVDD
                     IVGQDRAVQAIELAITTPSGGFNVFALGPPGIGKATAIRQFLTRRAATVPTPDDWCYV
                     HNFADPRRPRALRLPGGRARPFARAMDELLEELRSAIPAAFESDSYRTRKAQIEAELK
                     ERGDKAFAAIQK"
     gene            complement(585..713)
                     /locus_tag="VIU37_00100"
     CDS             complement(585..713)
                     /locus_tag="VIU37_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012366.1"
                     /translation="MAGLWLHRQGHPHLFLLVLAGLIALALLLLRGDSTVLAALPG"
     gene            1044..1529
                     /locus_tag="VIU37_00105"
     CDS             1044..1529
                     /locus_tag="VIU37_00105"
                     /inference="COORDINATES: protein motif:HMM:NF018184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HEY6012367.1"
                     /translation="MDYVIATRELGPQDVFSIRDRIAPAEIPAFLQGAFAELFGRLGL
                     LGVPPAGHPFVIYHAFGPIEMDAEVCVPIAGPATATGRIGSRQIPAATVARTLHVGPY
                     EELGAAYRALTEWIEGNGFEASGPVQERYLNGPGEGVAPADFRTEVEIPVVRAAVTIP
                     A"
     gene            1692..>2028
                     /locus_tag="VIU37_00110"
     CDS             1692..>2028
                     /locus_tag="VIU37_00110"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY6012368.1"
                     /translation="MMTVGDVMTRTVVSVRSWTPLKEVAQLLIERRISGVPVVDDDGA
                     LLGVVSEGDFLMKEQGARAVHHRPLARIFGESRASQSTMAKVGALTAGEAMTAPALTI
                     TSGRHISEAA"
BASE COUNT          273 a          741 c          733 g          281 t
ORIGIN      
        1 gcttctggat cgccgcgaag gccttgtcgc cgcgctcctt gagctcggcc tcgatctgcg
       61 ccttgcgcgt gcggtaggag tcggactcga aggcagccgg gatggcgctg cgcagctcct
      121 cgaggagctc atccatggcg cgcgcgaacg gccgggcgcg gccgcccggc agccggagcg
      181 cgcgcggccg gcgcggatcc gcgaagttgt ggacgtagca ccagtcgtcc ggcgtcggga
      241 cggtcgcggc gcgccgggtc aggaactgcc ggatggccgt cgccttgccg atcccgggcg
      301 gtccgagcgc gaagacgttg aacccgcccg atggtgtcgt gatcgcaagc tcgatcgcct
      361 ggacggcgcg gtcctgcccg acgatgtcgt ccacgtcggc gacctcggcg gtcgtgccga
      421 acgccaggtc cccggccggg cagtgccggt acaactcggc gacgcggagt tgccgcgacg
      481 cgtcgccgtc gggcgtcgtg gccggggccg cttgcaccgg aggcccctcg ccgggccgga
      541 cggtcatcgt cgccgtctcg agtgcgctcg tgccgctcgt cggctcagcc cggcagcgcg
      601 gcgaggaccg tcgagtcgcc cctgagcagc agcagagcga gcgcgatcag cccggccagc
      661 accagcagga agaggtgcgg gtgcccctgc cggtgcaacc acagtccagc catgcggtcc
      721 ctcgcagtct cgtcggccgc ccgggcatcc cggcctcgac cggccgcacc agcatgggcc
      781 tcggcacggt ccgccgccag agccaaacgg cgtgacggat ggggccgcgc gtcgtgccgt
      841 cgccacactg cgaatgtgtc cgatggctct ggtgccgcgc atcgcaccgc gcgacactcc
      901 acggctgccg gagatcgatg gcctgcgtac gtcgagcgga gggctccatg tcctgggggg
      961 tccgggccct ccgctcttct cccggccggc atgccgatcg gcgagcggcg ccgcgcctcg
     1021 cccgaacgga ggaggatcca accatggact acgtgatcgc gactcgcgag ctcggcccgc
     1081 aggatgtctt ctcgatccgc gaccggatcg cacccgcgga gatcccggca ttcctgcagg
     1141 gagcgttcgc cgagctgttc ggccggctgg gcctcctcgg cgtgccgccg gcgggacacc
     1201 cgttcgtcat ctaccacgcc ttcggaccga tcgagatgga cgccgaggtc tgcgtgccga
     1261 tcgccgggcc cgccaccgcc acgggccgca tcggctcgcg ccagatcccg gccgcaacgg
     1321 ttgcacggac gctccatgtc gggccgtacg aggagctcgg cgcggcctat cgcgccctca
     1381 ccgagtggat cgagggcaac ggcttcgagg cctcgggtcc cgtccaggag cgatacctca
     1441 acggtccggg cgaaggggtg gctccggcgg acttccgcac cgaggtggag atcccggtcg
     1501 tccgcgccgc ggtcacgatc ccggcctgac gcggcgcccg gcggttccgc ccggccgccg
     1561 cgcagtccga cctctagacg gcgccgccaa ggccaacccg caggggtcca cgtgaccgat
     1621 ggccctacgc agccgggccg tgccggacga gagtcagcct cgtagcccga cccggaaagg
     1681 acgtgatcgc gatgatgacg gttggcgacg tgatgacccg caccgtggtc tcggtccgct
     1741 cctggactcc gctcaaggag gtggcgcagc tcctgatcga gcgacggatc agtggggtgc
     1801 ccgtcgtcga cgatgacggc gcgctgctcg gggtcgtctc cgagggagac ttcctgatga
     1861 aggaacaggg cgcccgcgcg gtccaccacc ggcccctggc gcggatcttc ggcgagtcgc
     1921 gcgcgtccca gtcgacgatg gccaaggtcg gggcgctcac cgccggcgag gcgatgaccg
     1981 cacccgcgct gacgatcacc tccggtcgcc acatctcgga ggcggccg
//
LOCUS       DATDDI010000007         1763 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_291563, whole genome shotgun sequence.
ACCESSION   DATDDI010000007 DATDDI010000000
VERSION     DATDDI010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291563"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1199
                     /locus_tag="VIU37_00115"
     CDS             <1..1199
                     /locus_tag="VIU37_00115"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEY6012369.1"
                     /translation="PQVRRWQQLELESAAEMPAFFDEIVAAGTDVLGPVDRRRLERAA
                     ETAKIAIELYGSWLEGTLPDGTDQWAIGRDRHDAMVALRAFDGLDADAILELGWQRLR
                     EERAARVAAAREIDPDADETTVVDRVKSDQPAGFDEALVAYRDAMARSRRYLVEHDLV
                     TVPDDERIDVIATPEYLRNVLPFAAYFEPAAFDPSPKGIYVVTPSVDGDPNAIREHNF
                     SSISNTSIHEAYPGHHLQLDTARRHPSLTRMLTDAPEFVEGWGMYSELMMREQGFDAG
                     PAFRLAMHTDAIWRACRIILDVRMHRGELTVDEATDFLVEQTSFERPNAHAEIQWYTY
                     RPTYPLSYLLGRTLLLGLRADEQRRLGDRFSLKAFHDTLLRNGSLPISFHRRLLDGEA
                     GPPGRG"
     gene            1206..>1763
                     /locus_tag="VIU37_00120"
     CDS             1206..>1763
                     /locus_tag="VIU37_00120"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEY6012370.1"
                     /translation="MQVIPAIDLEGGRSRIVSWPGASTGVGAPTDRPDRIAERFAALG
                     ARVIHLVDFDGARSGAPANLEAVGAIATRIAVPLQLAGGLESAAAIRLAFAAGATRVV
                     LTTAIADRRDDLRDCLAVAGDWLAVGLDPRPERLAAFPWRRSTPPTLDELIGELVGAG
                     VARLVLSHGGAEPDLALTRRLVSSYD"
BASE COUNT          244 a          669 c          602 g          248 t
ORIGIN      
        1 tcccccaggt ccggcgctgg cagcagctcg agctcgagtc ggccgccgag atgcccgcct
       61 tcttcgacga gatcgtcgcc gccgggacgg acgtcctggg cccggtcgac cggcgacgcc
      121 tcgagcgcgc cgccgagacg gccaagatcg cgatcgagct ctacgggtcg tggctcgagg
      181 gcacgctgcc ggacgggacg gatcagtggg cgatcgggcg cgaccgccac gatgcgatgg
      241 tcgcgctgcg cgcgttcgac gggctggacg cggacgccat cctcgagctc ggttggcagc
      301 ggctgcggga ggaacgcgcc gcgcgcgtcg ccgccgcccg tgagatcgac cccgacgccg
      361 acgaaacgac cgtggtcgac cgggtcaagt cggaccagcc ggccggtttc gacgaggccc
      421 tcgtcgccta ccgggacgcc atggcccgat cgcgccggta cctcgtcgag cacgacctcg
      481 tcacggtccc cgacgacgag cggatcgacg tcatcgcgac ccccgagtac ctgcgcaacg
      541 tgctcccgtt cgcggcctac ttcgagccgg ccgccttcga tccgagcccg aaagggatct
      601 acgtcgtgac gccgtcggtc gacggcgacc cgaacgcgat ccgcgagcac aacttctcgt
      661 cgatcagcaa caccagcatc cacgaggcct atcccgggca ccacctccag ctcgacaccg
      721 cccgccggca tccgtccctg acccggatgc tgaccgacgc ccccgagttc gtggagggct
      781 ggggcatgta ctcggagctg atgatgcgcg agcaggggtt cgacgccgga ccggccttcc
      841 gcctggcgat gcacaccgac gccatctggc gcgcctgccg gatcatcctc gacgtccgga
      901 tgcaccgcgg cgaactgacg gtcgacgagg ccaccgactt cctcgtcgag cagaccagct
      961 tcgagcggcc caacgcccac gccgagatcc agtggtacac gtaccggccc acctacccgc
     1021 tgtcgtacct gctcggccgc accctcctgc tgggactgcg cgccgacgag cagcgtcgtc
     1081 ttggcgatcg cttcagcctc aaggccttcc acgacacgct gctgcgcaac ggttcgctgc
     1141 cgatcagctt ccatcggcgc ctgctggacg gcgaagccgg gccgccggga cgcggctgag
     1201 ccggcgtgca ggtcatcccg gcgatcgatc tcgaaggcgg ccgttcgcgc atcgtctcct
     1261 ggccgggggc ctcgaccggg gtcggcgcgc cgaccgaccg acccgaccgg atcgcggaac
     1321 ggttcgccgc cctcggcgcg cgggtcatcc atctcgtcga tttcgatggc gcgcggtccg
     1381 gggcgccggc caacctcgag gccgtcggcg cgatcgcgac gcggatcgcg gtcccgctcc
     1441 agctcgccgg tggtctcgag tcggccgccg ccatccgcct ggccttcgcg gccggtgcga
     1501 cccgggtggt gctcacgacg gccatcgccg accggcgcga cgacctccgc gactgcctgg
     1561 ccgtcgccgg cgactggctg gcggtcgggc tggatccacg accggagcgg ctggccgcgt
     1621 tcccctggcg acggagcacg ccgccaaccc tcgacgagct gatcggggag ctggtcgggg
     1681 ctggtgtcgc ccgcctcgtg ctgagtcacg gcggcgcgga accggacctc gcgctgaccc
     1741 gcaggctcgt ctcgtcgtac gat
//
LOCUS       DATDDI010000008         2730 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_603816, whole genome shotgun sequence.
ACCESSION   DATDDI010000008 DATDDI010000000
VERSION     DATDDI010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603816"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..498)
                     /locus_tag="VIU37_00125"
     CDS             complement(<1..498)
                     /locus_tag="VIU37_00125"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6012371.1"
                     /translation="MNGAEATRDQIDAVYRAESRVVLATLIRLLGDFDLAEEAVQDAF
                     LAATDQWPSEGLPVNPRSWLISAGRFKAIDRLRRRARFDAALGELALRLDQQVPDPAE
                     ADPEHVEDDRLRLIFTCCHPALSPDAQVALTMREVCGLTTEEIARAFLATPQTIAQRI
                     VRAKAK"
     gene            complement(495..890)
                     /locus_tag="VIU37_00130"
     CDS             complement(495..890)
                     /locus_tag="VIU37_00130"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY6012372.1"
                     /translation="MRYLCIVYAEERAFEAMSESELAQLDEASLANDEELRRSGHLIL
                     AQALQPVATATTVRVRNGRMSATDGPFAETTEQVGGFVFIEAADLNEAIQIAAAMPMA
                     RVGSIEVRPEFDLVAKVRERRARTAAPDA"
     gene            1058..1411
                     /locus_tag="VIU37_00135"
     CDS             1058..1411
                     /locus_tag="VIU37_00135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012373.1"
                     /translation="MADLTSLVAAILSIATVAVPIGLILALLVTGGYTVADLFLAPNW
                     EDRGHGPVPTHDEPAPRWRLERLRPRGEDSGPSTNAGGEEAGTVRASVRSLTLDQSDC
                     YRRMPPGARDAIVRS"
     gene            1408..2151
                     /locus_tag="VIU37_00140"
     CDS             1408..2151
                     /locus_tag="VIU37_00140"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6012374.1"
                     /translation="MRLTILGGAGAWPPAGGACSGYLVEEAGFRLLIDPGYAVLPRLL
                     ELLGADAVDAVLVSHGHPDHVADLNPLLRARALRDVPAPPLPTFALPGALRAVLALDR
                     PGMLDDALDLHEFDAGEAFRIGPVALDSRLLPHYLPNAGLRLTAGGRSITYTGDAGPS
                     DALVELAQGTDLLLAEATYAERVPDDSAAYLNSALEVGRQAARAEVDRLVLTHLQPGT
                     DPVAARDAARRAFDRGIEVAEPGLTVELS"
     gene            complement(2167..>2730)
                     /locus_tag="VIU37_00145"
     CDS             complement(2167..>2730)
                     /locus_tag="VIU37_00145"
                     /inference="COORDINATES: protein motif:HMM:NF024141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6012375.1"
                     /translation="MSTPCRRRGRRSAGSARPETPIRGRPTVRNLLANPTPRSAIVVA
                     KSIVVAIWALCITAWILVLGVTIGALVGLPGWSSDRFGQALASMTLAALLTIGLLTWV
                     SFFAGVGRGFIAPLAWAVATIAAAQVLAVLGWGSWFPFSVPAIMAGAGGAQVEPVTPA
                     AVGIVLIVAIGGLAATIAWWERADQTG"
BASE COUNT          374 a         1000 c          972 g          384 t
ORIGIN      
        1 cttggccttg gcgcggacga tccgctgggc gatcgtctgc ggggtcgcca ggaaggcccg
       61 tgcgatctcc tcggtcgtga gtccgcacac ctcgcgcatc gtcagcgcca cctgggcgtc
      121 cggtgacagc gcggggtggc agcaggtgaa gatcaaccgc agccggtcgt cctcgacgtg
      181 ctccgggtcg gcctcggcgg gatccggcac ctgctggtcg aggcgcagcg ccagctcgcc
      241 gagcgcggca tcgaaccggg cgcggcgtcg aagtcggtcg atcgccttga accgtcccgc
      301 cgagatgagc cacgagcgag ggttcaccgg caggccctcc gacggccatt ggtcggtcgc
      361 cgccaggaag gcgtcctgga cggcctcctc ggcgagatcg aaatcgccga ggagccggat
      421 cagggtggcc aggacgaccc gggactcggc gcggtagacc gcgtcgatct ggtcgcgggt
      481 cgcctcggcg ccgttcacgc gtccggcgct gccgtccggg ctcggcgctc ccgcaccttc
      541 gccacgaggt cgaactcggg ccgaacctcg atgctgccga ccctggccat gggcatcgcg
      601 gcggcgatct ggatcgcctc gttgaggtcg gcggcctcga tgaatacgaa gccgccgacc
      661 tgctcggtgg tctcggcgaa cgggccatcg gtggccgaca tccgtccgtt ccgcacgcgc
      721 acggtggtcg ccgtggcgac cggctgcagc gcctgggcaa ggatcaggtg gccgctccgc
      781 cggagctcct cgtcgttcgc gagggacgct tcgtcgagct gcgcgagctc gctctcggac
      841 atcgcctcga aggcacgctc ttcggcgtag acgatgcaca ggtatctcat cgggctctcc
      901 tgttcgggat ggcggtgggt gccgacacgg attggtcgtt cgagagcccc cgaaatcgac
      961 catcgcgccg atgtcgattc ccgtccgggt cggtcgacaa cctggcaagc cacgacatcg
     1021 agttcgtggc gcagcacagg tgaaaggagc gccagccgtg gccgacctca cgtccctcgt
     1081 cgccgccatc ctatccatcg ccacggtggc cgtgccgatc gggctgatcc tcgcactgct
     1141 cgtcaccggg ggctatacgg tggccgacct gttcctggcg ccgaactggg aggaccgcgg
     1201 tcatggcccg gtgccgaccc acgacgagcc ggcgccgcgc tggcggctgg agcgcctgcg
     1261 cccgcgcggc gaggactccg gcccgtcgac gaacgccggc ggcgaggagg ccggaacggt
     1321 ccgggcgtcc gttcggtccc tcaccctgga ccagtccgac tgctaccgcc ggatgccgcc
     1381 tggggcacgg gacgctatcg tcaggtcatg aggctgacga tcctgggcgg tgccggcgcg
     1441 tggccgcccg ccggtggcgc ctgcagcggg tacctcgtgg aggaggccgg cttccggctg
     1501 ctgatcgacc ccggctacgc cgtcctgccg cgactgctcg agctgctcgg cgcggacgcc
     1561 gtcgacgccg tcctcgtcag ccacgggcat cccgatcacg tggccgacct gaacccgctg
     1621 ctgcgggcgc gcgcccttcg cgacgttccg gcgccacccc tgccgacatt cgcgctgcct
     1681 ggcgcgctgc gtgccgtcct cgccctggac cgaccgggca tgctggacga cgcgctggac
     1741 ctgcacgaat tcgacgccgg cgaggccttc cggatcgggc cggtcgccct cgattcgcgg
     1801 ctcctgcccc actacctgcc gaacgccgga ctgcggctga ccgcgggtgg gcgttcgatc
     1861 acgtataccg gcgacgccgg gccgagcgac gcgctcgtcg agctcgctca gggcaccgac
     1921 ctcctgctgg ccgaggccac ctatgccgag cgcgtccccg acgattccgc ggcctatctc
     1981 aacagtgcgc tggaggtcgg ccggcaggcg gcccgggcgg aggtggaccg tctggtgctg
     2041 acgcacctcc agccggggac ggacccggtc gccgcccgcg acgcggcccg tcgcgccttc
     2101 gaccgcggga tcgaggtcgc cgagcccggg ctgacggtgg agctgtcctg aggcgcgtcc
     2161 gatccgtcag ccggtctggt cggcgcgctc ccaccaggcg atcgtggcag cgagcccgcc
     2221 gatcgcgacg atcagcacga tgccgaccgc ggccggcgtg accggctcga cctgtgcgcc
     2281 gccggcgccg gccatgatgg ccggcacgga gaacgggaac cacgatcccc agcccaggac
     2341 cgcgagcacc tgcgctgcgg cgatcgtcgc caccgcccac gcgaggggag cgatgaaccc
     2401 acgacccacc ccggcgaaga acgagaccca ggtcagcagc ccgatcgtga gcaacgccgc
     2461 cagggtcatc gaggcgagcg cctggccgaa cctgtcggac gaccagccgg gcagcccgac
     2521 cagcgccccg atggtcacgc cgagcacgag gatccaggcc gtgatgcaca gcgcccagat
     2581 cgcgacgacg atcgacttgg cgaccacgat cgcgctgcgc ggtgtcgggt tggcgagcag
     2641 gttccggacg gtggggcgac cacggatcgg cgtctcgggc cgcgcgctac ccgccgatcg
     2701 cctgcccctc cggcggcagg gtgtagacat
//
LOCUS       DATDDI010000009         4596 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_583004, whole genome shotgun sequence.
ACCESSION   DATDDI010000009 DATDDI010000000
VERSION     DATDDI010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_583004"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..405
                     /locus_tag="VIU37_00150"
     CDS             <1..405
                     /locus_tag="VIU37_00150"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family detoxifying hydrolase"
                     /protein_id="HEY6012376.1"
                     /translation="VGHRTKDDRMDVTAIDNERMPAALGPYSQAVRAGDLLFVAGQPG
                     IDPELGPLTGGDFEAEARVAFMNLRRVLQAAGLDLDRVVKTTVFLASADAFPTLNALY
                     AEYFPSSPPVRSTPIVELPRGLRISIEAIAAY"
     gene            complement(413..829)
                     /locus_tag="VIU37_00155"
     CDS             complement(413..829)
                     /locus_tag="VIU37_00155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012377.1"
                     /translation="MTDTSRVRGRPANAVRAAALLYAANGAGFGIGAALTGWYYAHHR
                     ELPMTPFGFRSLSGPFESLGSDRFVALIWALVGLCALDVLTGAWLWHGRRRGAVASVA
                     SAPVSLGLGVGFALPLLLATLPVRLVLVWLGRRSLR"
     gene            complement(1050..1367)
                     /locus_tag="VIU37_00160"
     CDS             complement(1050..1367)
                     /locus_tag="VIU37_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012378.1"
                     /translation="MEWDLGLQGLGVLLVMSLAFGVFTQLVFWGHATRWLWLAASVLM
                     FAVGLFMSEGLFGWATEADLQPNIDGLSFDEVLLSFLAAGVVVLVARAFVWRRSHRSR
                     AAA"
     gene            complement(1483..1558)
                     /locus_tag="VIU37_00165"
     tRNA            complement(1483..1558)
                     /locus_tag="VIU37_00165"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1523..1525),aa:Arg,seq:ccg)
     gene            complement(1589..2851)
                     /locus_tag="VIU37_00170"
     CDS             complement(1589..2851)
                     /locus_tag="VIU37_00170"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY6012379.1"
                     /translation="MTSLGRPIQGILARLAAVGADPDDDEETRTRKALLVLIAVLILP
                     IALVWGVLYLALGAQSGVAAFIYFAVSLGSIALFARTRNLALLLRIQLTAILLAPTLS
                     MIPLAGFLGSGGVGLWGVMAPMGALVFGGTRAGIRWYIAFVAVLLGSGIAGQVLGFVS
                     PLPAWFTNLMLGLNITVGGSMVFTLLALFSRQREDALRDLRTEQERAESLLLNILPGS
                     IAARLKASPERIADQFVAASVLFADVVDFTPRSESLAPAEVVGLLDRLFSHFDTLAER
                     HGLEKIKTIGDAYMVASGVPIARPDHARVLALLALEMLEAMHPGGAVGDLGLQLRVGI
                     NSGPVVAGVIGRKRFLYDLWGDAVNTASRMESHGTAGNIQITRATYELLKDEFVCEPR
                     GTVTIKGKGEMETWYLVGRSRRNEQPKL"
     gene            complement(2948..3820)
                     /locus_tag="VIU37_00175"
     CDS             complement(2948..3820)
                     /locus_tag="VIU37_00175"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6012380.1"
                     /translation="MTEPTAHTMEAPGALLTYDVRRNDSSRQPTLFLIGSPMGASGFV
                     TLASHFADRTVVTYDPRGAERSPRTDDATRNTPEEHADDLYRIIAALGTGPVDLFASS
                     GGAVNALALVERHPEQIRTLVAHEPPTAMVLPDRDAALAACVAIHETYERAGFGPAMA
                     KFIALVSHEGPVPAGFGDQPGPDPAMFGLPTEDDGSRRDPLLGLNMPAINEYEPDFEA
                     LRAASTRIVIGVGAQSGRMMAGRGGIGVAEGLGAPPVIFPGGHDGFLGGEYGQTGEPD
                     AFAAKLREVLSADA"
     gene            complement(3912..>4596)
                     /locus_tag="VIU37_00180"
     CDS             complement(3912..>4596)
                     /locus_tag="VIU37_00180"
                     /inference="COORDINATES: protein motif:HMM:NF042530.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HEY6012381.1"
                     /translation="VVYLVFNEGYAPSSGPSLTRPDLSGEAIRLGRLLVDLLPESEAE
                     GLLALMLLHESRRLARTSPAGELVLLPDQDRGAWDRGLIAEGSALAARALAGDQAGPY
                     AIQAAISAVHASAATAEATDWDRIVGLYDRLLRADPSPVVELNRAVAVGMRDGPAVGL
                     RLIDGLLARGLLLDYHLAHAARAEALQRLGRTDEARAAYARALALARTDPERRFLERR
                     IHELRSEPA"
BASE COUNT          740 a         1614 c         1633 g          609 t
ORIGIN      
        1 gttgggcacc gcacgaagga cgaccgaatg gatgtcaccg ccatcgacaa cgaacggatg
       61 ccggccgccc tcgggccgta ctcgcaagcg gtccgcgccg gagacctgct gttcgtcgcc
      121 ggccagcccg gcatcgatcc cgagctggga ccgctgaccg gcggggattt cgaggcggaa
      181 gcccgagtgg cattcatgaa cctgcggcga gtgctgcagg ccgcggggct cgatctggat
      241 cgggtcgtca agacgaccgt gttcctcgcc tcggcggacg cgttcccgac cctgaacgcc
      301 ctctacgcgg agtacttccc gagctcacct cccgtccgtt cgaccccgat cgtggaattg
      361 ccgcgcggtc tacggatctc gatcgaggcc atcgccgcct actgaggcgt cgtcagcgca
      421 ggcttcggcg tcccagccag acgagcacga gccggactgg caacgtcgcg agcaggagcg
      481 gcagggcgaa tccgacgccg agcccgagcg acaccggcgc ggaagcgaca ctcgctacgg
      541 ccccgcgtcg tcgcccgtgc cacaaccagg cgcccgtgag cacatccagg gcacagagac
      601 cgacgagcgc ccagatgagg gcgacgaacc gatctgaccc aaggctctcg aacggaccgc
      661 tgagggatcg gaatccgaac ggcgtcatcg gaagctcgcg gtggtgcgcg tagtaccagc
      721 ccgtcagggc ggcaccaatg ccgaagccgg cgccgttcgc ggcgtagaga agggcggcag
      781 cccggacggc gttggctggg cggccgcgca cgcggctggt gtcggtcatg gcgtctcctc
      841 ggaacggacg gcgtcgcggt cgcggcgttc ggtgagtcga tcctcgagcc acggcagcgc
      901 gagttcgacg cagagctcgg cggccgcctc ggacgacaga ccgcgcgcac gggctcacgc
      961 tcataggctc gccaccacgg tcgcgcgcgc ccgcagaacg ccgccagctc gaacgccagg
     1021 cggcgcactc gcccagagag gtcgtcggat caggcggcgg cccttgaccg gtggctccgc
     1081 cgccacacga aggcccgcgc cacgaggacc acgacgccgg cggcgaggaa gctcaggagc
     1141 acctcgtcga aggaaagccc gtcgatgttc ggctgcaggt cggcctcggt cgcccacccg
     1201 aacaggccct cgctcatgaa caggccgacg gcgaacatca gcaccgaagc ggccagccag
     1261 agccagcgcg tcgcgtggcc ccagaacacg agctgcgtga ataccccgaa ggccaaggac
     1321 atgaccagga ggacaccgag cccctggagt cccagatccc actccactcc gcccacctcg
     1381 cactcgagcg tggatcgccg atgcgcgatc ccaacccact agggtgggaa cctcaggcgc
     1441 cccggggcaa gagccgatcg gcccatcgag ccacggtcga ggtggcgcgc ccgacaggat
     1501 tcgaacctgc gaccttcggc tccggaggcc gacgctctat ccactgagct acaggcgcgc
     1561 ggcctccgat gatagcggtc gagcctggtt acagcttcgg ctgctcgttc cggcggcttc
     1621 ggccgaccag gtaccacgtc tccatctcgc ccttgccctt gatcgtcacc gtgccgcgtg
     1681 gctcgcacac gaactcgtcc ttcaggagct cgtaggtcgc gcgggtgatc tggatgttgc
     1741 cggccgtgcc gtgcgactcc atgcggctcg cggtgttcac cgcgtcgccc cacaggtcgt
     1801 agaggaaccg cttccggccg atgaccccgg cgaccaccgg ccccgagttg atcccgactc
     1861 ggagctgaag cccgaggtcc ccgaccgctc cgcccgggtg catggcctcg agcatctcga
     1921 gcgcgagcag cgccaggacg cgagcgtggt ccggccgcgc gatggggacg cccgaggcga
     1981 ccatgtacgc gtcgccgatg gtcttgatct tctccaggcc atgccgttcg gcgagggtgt
     2041 cgaagtggct gaacagtcga tcgaggaggc ccacgacctc ggccggagcg aggctttcgg
     2101 atcggggagt gaagtcgacg acgtccgcga acaggaccga cgcggcgacg aactggtccg
     2161 cgatccgctc cgggctcgcc ttcagccgtg cggcgatcga gccggggagg atgttcagca
     2221 ggagactctc cgctcgctcc tgctcggtgc ggaggtcccg cagcgcatct tcgcgctgcc
     2281 tggagaacag cgcgaggagc gtgaagacca tcgacccgcc gacggtgatg ttcagcccga
     2341 gcatgaggtt cgtgaaccac gccggcagcg gcgacacgaa cccgagcacc tgccccgcga
     2401 tgcccgagcc caggaggacg gcgacaaacg cgatgtacca gcggatcccg gcgcgggtgc
     2461 cgccgaagac gagcgccccc atcggggcca tgacgcccca caggccgacg ccgcccgagc
     2521 cgaggaagcc ggccagcggg atcatcgaca gcgttggcgc caacaggatg gcggtcagct
     2581 ggatgcgcag gaggagcgcc aggttgcgtg ttcgtgcgaa cagggcgatc gacccgaggg
     2641 acaccgcgaa gtagatgaac gcggcgacgc cggactgcgc cccgagggcg aggtagagga
     2701 cgccccagac cagcgcaatc ggcaggatca ggaccgcgat caggacgagg agggccttgc
     2761 gcgtgcgcgt ttcctcgtcg tcgtcggggt ccgcgccgac ggccgcgagc cgcgcgagga
     2821 tcccctggat cggacggccg agcgaggtca cgcactgagc atagtgggcg ttcggcggag
     2881 cgcgttcgcc tgcccgaacg cggcgcggtg aatgttgtgg tcttcgagcg atcggcactc
     2941 gtgccgctca ggcgtccgcc gagagcacct cgcgcagctt cgcggcaaag gcatcgggtt
     3001 cgccggtctg gccgtactcg ccgccgagga agccgtcgtg gccgcccggg aagatgaccg
     3061 gcggcgcgcc gaggccctcg gcgacgccga tcccgccccg gccggccatc atccggccag
     3121 attgcgcgcc gacgccgatg acgatccggg tcgaggctgc gcgaagcgcc tcgaaatccg
     3181 gctcgtactc gttgatggcc ggcatgttca gccccaggag cggatcgcgc cgcgagccgt
     3241 cgtcctccgt tggcagcccg aacatcgccg ggtccggacc gggctgatcg ccgaagccgg
     3301 ccgggaccgg gccttcatgg ctgaccagcg cgatgaactt ggccatggcg ggcccgaaac
     3361 cggcgcgctc gtacgtctcg tggatggcca cgcaggcggc cagggcggca tcgcgatcgg
     3421 gcaggaccat ggccgtcggc ggctcgtgcg cgacgagcgt ccgaatctgc tcggggtggc
     3481 gctccaccag tgccagcgcg ttcaccgcgc cgccgctgct ggcaaagagg tcgaccggtc
     3541 cggtgcccag cgccgcgatg atccggtaca ggtcgtcggc atgctcctcg ggggtattcc
     3601 tggtcgcgtc atcggttcgc gggctgcgct cggcgccgcg cgggtcgtag gtcacgaccg
     3661 ttcggtcggc gaaatggctg gcgagcgtga caaacccgga ggcgcccatc ggcgagccga
     3721 tcaggaacag ggtcggttgg cggctcgaat cgttgcggcg gacgtcgtag gtcaggaggg
     3781 cgcccggggc ctccatcgtg tgggccgtcg gctcggtcat tggcgtggct cctcgcacag
     3841 atcgtcggct ggataccgca tagacccctc gcgatggccg gattcatcgg cgactggccc
     3901 ggccggccgg ttcaggcagg ctccgatcga agctcgtgga tgcgacgctc gaggaagcgc
     3961 cgctccgggt ccgtgcgggc gagcgccagc gcccgggcat aggccgcccg cgcctcgtct
     4021 gtccggccca ggcgctgcag cgcctcggcc ctggccgcgt gggccaggtg gtagtcgagg
     4081 agcagtcccc gggcgagcag tccgtcgatc aggcgcaggc ctacggcggg cccgtcacgc
     4141 atcccgaccg cgacggcgcg gttcagctcg acgaccggtg acgggtccgc gcggagcagg
     4201 cggtcgtaca gccccacgat ccggtcccag tcggtcgcct ccgcggtggc ggccgaggcg
     4261 tgcaccgcac tgatcgcggc ctggatcgcg tacggcccgg cctggtcgcc ggcgagcgcg
     4321 cgggccgcca gggccgaacc ctccgcgatc agcccacgat cccaggcacc gcgatcctgg
     4381 tcagggagga gcaccagctc gcccgccggc gaggtccggg ccaagcgtcg ggattcgtgc
     4441 aggagcatga gggccagcag gccttcagcc tccgattccg gcagcagatc caccagcaac
     4501 cgcccgagcc ggatcgcctc gccggacaga tcgggccggg tcagcgatgg ccccgacgac
     4561 ggggcgtacc cctcgttgaa gacgaggtac acgacg
//
LOCUS       DATDDI010000010         1881 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_145942, whole genome shotgun sequence.
ACCESSION   DATDDI010000010 DATDDI010000000
VERSION     DATDDI010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145942"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..799
                     /locus_tag="VIU37_00185"
     CDS             <1..799
                     /locus_tag="VIU37_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012382.1"
                     /translation="GVGDSIIIDGSPSEADLAELETRTAAFLRAVAEATGVAGDAATL
                     AAAIRRRTEVALPAIRELAGRVDRAGLLGWLLLGRTGELAPAADVAATSRAWYEELRL
                     AGALAGGLRAAALGEAEAWAGAELVRVLLALPRPSALRGPARTADLRLLDQWLAREAI
                     RTAIGTNTWEGVEYIDRDAFDAMLRWAERLDAIDAVGSPAAAAGLAGAREPTQPGLAA
                     RLSAKAAAAGYRVDRLREALTPPAPARVPRRPRPPQSPGRRRPPPAS"
     gene            complement(848..>1881)
                     /locus_tag="VIU37_00190"
     CDS             complement(848..>1881)
                     /locus_tag="VIU37_00190"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEY6012383.1"
                     /translation="TLTPERILAEAEREYLAVRGELVRIATALWPTWCPARPVPGDDG
                     ALVRGVLDAVAAEHPKAEELLDFCRAENARIEAFCRERDLVGLADDPLEIQWTPVFLR
                     AFGGAMLISPGPLDKGQKTFFAITPMPDDWTDAQRESNLREDNDRMLRLLTIHEAVPG
                     HYLQGVYANRCPSLVRAIFSSGLYAEGWAVYVTQVMMDAGYGADDPALLLTHWKFYLR
                     SITNAIIDAKIHCDGMTADEAVALMVDGGFQEEAEARAKFDRARLSSTQLSTYFAGSM
                     ELWDIEREVRRRAAVAVGDPRGAAAVPEPAVVGGFGETPGFVYRTHLESVLAHGAPPT
                     SLLRRILLG"
BASE COUNT          249 a          687 c          709 g          236 t
ORIGIN      
        1 cggcgtcggc gactcgatca tcatcgacgg gtcgccgtcc gaggccgacc tggcggagct
       61 cgagacccgg acggcagcct tcctccgggc cgtggcggag gcgacgggcg tcgccggtga
      121 cgcggcgacc ctggcggccg ccatccggcg ccggaccgag gtggcgctgc cggcgatccg
      181 cgagctggcc ggccgcgtgg accgggcggg gctcctcggc tggctcctgc tcggccggac
      241 cggcgagctg gcaccggccg ccgacgtggc ggccaccagt cgcgcgtggt acgaggagct
      301 gcggctggcc ggcgccctgg ccgggggcct ccgcgcggct gcgctgggcg aggcggaggc
      361 ctgggccgga gccgagctcg tccgcgtgct gctcgcgctg ccccggccgt cggccctgcg
      421 tggcccggcg cggacggcgg acctgcgcct gctcgaccag tggctggcga gggaggccat
      481 ccggacggcc atcggcacga acacctggga aggcgtcgag tacatcgacc gcgacgcctt
      541 cgacgccatg ctccgctggg cggaacgcct ggacgcgatc gacgccgtgg ggagcccggc
      601 ggccgcggcc ggcttggccg gcgcccgaga accaacccag cccgggctcg cggcacgact
      661 gtcggccaaa gccgcagccg ccggttaccg ggtggatcgg ttgcgcgagg cgctcacgcc
      721 accggctccg gcccgcgtcc cccgacgacc gcggccaccg caatcgccgg gtcgaaggcg
      781 gcccccgccg gcgagctgac cccgcgggtg ccgacggcgg gctccgctcg gtcccgccgg
      841 ccctgggtca gccgaggagg atccgtcgca gcagcgacgt cggaggggcg ccgtgcgcga
      901 ggaccgactc gaggtgcgtc cggtagacga agccgggcgt ctccccgaag ccaccgacga
      961 ccgccggctc ggggaccgcg gctgcccctc gtgggtcacc gacagcgacg gcggcgcggc
     1021 gacggacctc gcgctcgatg tcccagagct ccatggagcc cgcgaaatag gttgacagct
     1081 gggtggagga cagcctcgcc cggtcgaact tggcacgggc ctcggcctcc tcctggaagc
     1141 cgccgtccac catcagcgcg accgcctcgt cggcggtcat gccgtcgcaa tggatcttcg
     1201 cgtcgatgat cgcgttggtg atcgagcgca ggtagaactt ccagtgggtc agcagcagcg
     1261 ccgggtcgtc cgccccgtag ccggcatcca tcatcacctg ggtgacgtag accgcccagc
     1321 cctcggcgta cagcccgctc gagaagatcg cgcgaaccaa tgacgggcag cggttggcgt
     1381 agacgccctg gaggtagtgg cccgggacgg cctcgtggat cgtcagcagg cgaagcatcc
     1441 gatcgttgtc ctcgcgcagg ttcgattcgc gctgcgcgtc cgtccagtcg tcgggcatcg
     1501 gggtgatcgc gaagaacgtc ttctgcccct tgtccagcgg cccgggcgag atgagcatcg
     1561 cgccgccgaa ggcgcgcagg aagacgggcg tccactggat ctcgagcggg tcgtcggcca
     1621 ggccgacgag atcgcgctcg cggcagaagg cctcgatccg ggcgttctcc gcgcggcaga
     1681 agtcgagcag ctcctcggcc ttcgggtgct cggcggccac cgcgtcgagc acgcctcgca
     1741 cgagggcgcc gtcgtccccg ggcaccgggc gagcggggca ccacgtcggc cacagggccg
     1801 tggcaatgcg gacgagctcg ccccggaccg caaggtactc acgctcggcc tccgccagga
     1861 tccgctccgg ggtgagcgtc t
//
LOCUS       DATDDI010000011         2631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_562160, whole genome shotgun sequence.
ACCESSION   DATDDI010000011 DATDDI010000000
VERSION     DATDDI010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562160"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1424
                     /locus_tag="VIU37_00195"
     CDS             <1..1424
                     /locus_tag="VIU37_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012384.1"
                     /translation="ARAIRRTRQQVQQNELVESVRRLRPSTNLLNWDPRPGRANAPAI
                     EDSLLDRLRRGDPVADSIGNVLTFYGIQNLILDPTMESVYPPAATSSVEAVWSRSLLG
                     APAWYVKDGGTSATGSFGVEYLRDDPIDNPYNSAAVRMRLTATGSGTHTLEVRSVNWA
                     IVNFPVLPYLVGAVRVARLFNNTDTNVTSRKLILELYDQSSAVVRASNTVDLELNVPI
                     DTQKQLVVSIPFAGESWESNNFQIRVRLELVTTGATGTAYFHIGEPQLILSYSPDPPP
                     YTPNIASWHPIKVASYGRTDPDVVLEAAVTPESNARISILNSGTILWGSGSAAADTDL
                     YRGTANQLKTTDTLYAVGGLTTDGTALLRGAVVFNSEVVSTVDADQNNYSPTNFASCS
                     VLRFTSLTLTRTITGLAAASTDGRRVTVVNNTAQSLVLAHESASSTATNRFRCPNAAN
                     LTIRQQGAVDLMYVGSRWTVVAP"
     gene            1434..1595
                     /locus_tag="VIU37_00200"
     CDS             1434..1595
                     /locus_tag="VIU37_00200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012385.1"
                     /translation="MTGDIVLYVTLFLSGVAVGFWLGSIPLERAVDFHNARRRHVGRS
                     FRHRRRDGR"
     gene            1585..1797
                     /locus_tag="VIU37_00205"
     CDS             1585..1797
                     /locus_tag="VIU37_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012386.1"
                     /translation="MADDPRSRRPDYRFARIVAAGSLTLVVSTMLIVDLIPAANYEVQ
                     PVVLVPILGFIAGLLGVEIRSILKGD"
     gene            1797..>2631
                     /locus_tag="VIU37_00210"
     CDS             1797..>2631
                     /locus_tag="VIU37_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012387.1"
                     /translation="MSYAPTSIANLAAYWKAQGGVNLGIVGNTAHTVGYHLGKDRIYD
                     GSGPGLGDRDYSVQLARDKAGLTNAAAAIDLGKLDGSITKLRKFSEWLVAQGRAGKLR
                     DVKEIIYSTSDGVYVKRWSGPDNKVYTSLRKNPDGSITTITAGNGDASHFTHTHISFY
                     RDSEGRAKVPYFAPYFEEVSDDMPAMTTYLPGSTVTVKPTANVRVAPTLTAKVIRVVG
                     AVAEKWTGDGWVTGEVDPDGGSNQWYVRWNDGWEYTAKSNLTAGPTPAITAAQLDAAV
                     KA"
BASE COUNT          449 a          992 c          816 g          374 t
ORIGIN      
        1 tcgcccgggc catccgccgg acccgccagc aggtgcagca gaacgagctc gtcgagtccg
       61 tccggcgcct gcgcccgtcg accaacctgc tcaactggga cccgcgccct ggccgggcca
      121 acgcgccggc catcgaggac agcctgctcg accggctccg ccgcggcgac ccggtcgcgg
      181 actcgatcgg caacgtcctg accttctacg ggatccagaa cctcatcctc gacccgacga
      241 tggagtccgt ctacccaccg gccgcgacga gctcggtgga ggcggtctgg tcgcgctccc
      301 tgctcggcgc cccggcgtgg tacgtcaagg acggcggcac gtcggccacc ggcagcttcg
      361 gcgtcgagta cctgcgcgac gacccgatcg acaacccgta caactcggcc gccgtgcgga
      421 tgcgcctgac ggcgaccggc tcgggcaccc acaccctcga ggtgcgctcg gtcaactggg
      481 ccatcgtcaa cttcccggtc ctgccctacc tcgtcggcgc ggtccgggtg gcccgcctgt
      541 tcaacaacac cgacacgaac gtcacctcgc gcaagctcat cctcgagctc tacgaccaga
      601 gctcggccgt ggtgcgcgcc tcgaacacgg tcgacctcga gctcaacgtc ccgatcgaca
      661 cccagaagca gctcgtcgtc tcgatcccgt tcgcgggcga gtcatgggag tccaacaact
      721 tccagatccg ggtgcgcctg gagctcgtca cgaccggcgc gaccggcacg gcctacttcc
      781 acatcgggga accgcagctc atcctctcgt acagccccga cccgccgccc tacaccccga
      841 acatcgcctc gtggcacccg atcaaggtcg cgagctacgg ccggacggat cccgacgtcg
      901 tgctcgaggc ggccgtcacg ccggagtcca acgcccgcat cagcatcctc aacagcggga
      961 cgatcctgtg ggggtccggc agcgccgccg ccgacacgga cctgtatcgt gggacggcca
     1021 accagctcaa gacgaccgac acgctctacg ccgtgggcgg cctgacgacc gacggcaccg
     1081 cgctgctgcg cggcgcggtc gtgttcaaca gcgaggtcgt cagcacggtc gatgccgacc
     1141 agaacaacta cagcccgacc aacttcgcga gctgttcggt cctccggttc acctcgctca
     1201 ccctcacgag gacgatcacc gggctcgcgg ccgcctccac cgacggccgg cgggtcaccg
     1261 tcgtcaacaa caccgcgcag agcctcgtcc tggcccacga gtccgccagc agcacggcga
     1321 ccaaccgctt ccgctgtccg aatgccgcca acctgaccat ccgccaacag ggcgccgtcg
     1381 acctcatgta cgtcggctct cgctggacgg tggtcgcacc ataaggagtg tctatgactg
     1441 gagacatcgt tctctacgtg accctgttcc tgtccggggt ggcggtcggg ttctggctgg
     1501 gaagcatccc cctcgagcgc gccgtggact tccacaacgc gcgccgacgt catgtcgggc
     1561 gcagctttcg acatcgtcgg cgcgatggca gatgatccgc gctcccgccg cccggactac
     1621 cggttcgccc ggatcgtggc ggcggggtcg ctcacgctcg tcgtgtcgac catgctgatc
     1681 gtcgacctca tccccgcggc caactacgag gtccagccgg tcgtcctcgt gcccatcctc
     1741 gggttcatcg ccggcctgct cggtgtcgag atccgctcga tcctgaaagg cgactgatgt
     1801 cctacgcgcc cacgtccatc gcgaacctcg cggcctactg gaaggcccag ggcggggtca
     1861 acctcggcat cgtcgggaac accgcccaca ccgtcggcta ccacttgggc aaggaccgga
     1921 tctacgacgg gtccgggccc ggcctcggtg accgggacta cagcgtgcaa ctcgcccgcg
     1981 acaaggccgg gctgacgaac gcggcggccg ccatcgacct cggcaagctc gacgggtcga
     2041 tcacgaagct ccgcaagttc agcgaatggc tcgtcgccca gggccgggcg ggcaagctcc
     2101 gcgacgtcaa ggagatcatc tactcgacct cggacggggt ctacgtcaag cggtggtcgg
     2161 gccccgacaa caaggtctac acgagcctcc gcaagaaccc ggacggctcg atcacgacga
     2221 tcacggccgg gaacggcgac gccagccact tcacacacac ccacatcagc ttctaccgtg
     2281 acagcgaggg gcgggccaag gtgccgtact tcgccccgta cttcgaggag gtcagtgacg
     2341 acatgccagc gatgacgacc tacctgccgg gctcgaccgt cacggtcaag ccgacggcca
     2401 acgtgcgtgt cgcgccgacc ctcaccgcca aggtcatccg cgtcgtcggc gccgtggccg
     2461 agaagtggac cggcgacggc tgggtcacgg gcgaggtgga ccccgacggc ggcagcaacc
     2521 agtggtacgt ccgctggaac gacggctggg agtacaccgc caagagcaac ctgaccgccg
     2581 ggccgacgcc cgccatcacg gcggcgcagc tcgacgccgc ggtcaaggcc g
//
LOCUS       DATDDI010000012         2044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_62740, whole genome shotgun sequence.
ACCESSION   DATDDI010000012 DATDDI010000000
VERSION     DATDDI010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62740"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(205..339)
                     /gene="rpmH"
                     /locus_tag="VIU37_00215"
     CDS             complement(205..339)
                     /gene="rpmH"
                     /locus_tag="VIU37_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008650850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEY6012388.1"
                     /translation="MKQTYQPKKRHRAKEHGFRARMKTTGGRRVLAARRARGRKRLSV
                     "
     gene            822..>2044
                     /gene="dnaA"
                     /locus_tag="VIU37_00220"
     CDS             822..>2044
                     /gene="dnaA"
                     /locus_tag="VIU37_00220"
                     /inference="COORDINATES: protein motif:HMM:TIGR00362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEY6012389.1"
                     /translation="MDAKQVWRAALGELQVSLSPANFETWLRDTAIVEVDDNRFRISV
                     PNGFAKDWLESRYRSLISQTLARIVGYSVQVEFVVGPAPAAAAADDTDTDGDGLAFEP
                     APKPMMAAGHANGNGNGQGGHVMGPGRPAPGTSPQPAAPQQVRIEPTRVGGEGGTSFL
                     NPRYTFANFIVGSANRLAHAASLSVAERPGHAYNPLFLYGGVGLGKTHLMHAIGNQVL
                     AKFPRKRVVYATSEKFTNEFITSIQQGKIDEFRARYRRIDLLLIDDIQFIADKERTQE
                     EFFHTFNAIHEDGKQIVLSSDRPPKAILTLEERLRSRFEWGLIADLTAPDLETRIAIL
                     RAKAEEGAVPITSDVIEFIARKVVSNIRELEGALNRIVAYASMGAMPISIELAQAVLS
                     NVLYNPKKRQVTPER"
BASE COUNT          329 a          759 c          667 g          289 t
ORIGIN      
        1 gccggcgaac ccggttgcga acgacggccg acccgatggt cttgctcgtc gcaaggccga
       61 accgcgtcga tccgaggtct gtcctgagga ctctcgtcgc gaggagcgga tgggatcgaa
      121 tcgtcccacg ctccatgagc gccgcgaagt cccgcgggct ggagagcatc acgaggcgcg
      181 gcggtcgagt gccgcgctcg gtcgtcagac cgacaggcgc ttgcgaccgc gggcccggcg
      241 tgcggccagg acgcggcgtc cgcccgtggt cttcatccgg gcgcggaagc cgtgttcctt
      301 ggcgcggtgg cgcttcttgg gctggtaggt ctgcttcatc gtgcctgcgc gggatcctct
      361 ccgtcgggcc tcggggttcc gtcatccttg accccgaaag gcacgcaaac gcgccggcgc
      421 ccccacgggg cgtggcgcgt tcactgtccg gcggatgata ggtcgggccg gaacgatcgg
      481 tcaaacgccg cgtgacgccg tcggcgcgac gagccggtgg cacgccggcc gcccgcccga
      541 cgcccgcggc gggacacctc ccggggcgcc ggatggatac tccaggggag tatcacggaa
      601 tcgccttgcg aggcccgggg ggcggtgcta tcgttcgcgc cccgacgccc cccggacggt
      661 cccatctcga ccggttcgga gcccgacgga gaccgttcgc agccccgcga acccggagca
      721 acggactcgc catcgcctga tctcgacgcc cctggctcat cggaatccgg cctcgctcga
      781 ccatcttcag cccaccccga cagagagccg acatcgaccg tatggacgcg aagcaggtct
      841 ggcgcgcagc gctcggagag ctccaggtgt cgctgtcgcc tgcgaacttc gagacctggc
      901 tgcgcgacac ggcgatcgtc gaggtcgacg acaaccgctt ccggatctcc gtccccaacg
      961 gcttcgccaa ggactggctc gagagccgct accgatccct gatctcccag acgctcgccc
     1021 ggatcgtggg ctacagcgtc caggtcgagt tcgtcgtcgg gccggcaccc gccgcagcgg
     1081 ccgcggacga cacggacacc gacggcgatg gcctggcctt cgagccggcg ccgaagccga
     1141 tgatggccgc cgggcacgcg aacggcaatg gcaatggcca aggcggccac gtcatgggcc
     1201 ccggccggcc ggcgcccggc acgagccccc agcccgccgc cccgcagcag gtccggatcg
     1261 agccgacccg cgtcggcggc gagggcggca cgagcttcct caacccccgc tacacgttcg
     1321 cgaacttcat cgtcggctcg gccaaccgcc tcgcccacgc ggcctcgctg tcggtcgccg
     1381 agcgcccggg ccacgcctac aacccgctct tcctgtatgg cggcgtgggc ctcggcaaga
     1441 cccacctcat gcacgccatc ggcaaccagg tcctcgccaa gttcccccgc aagcgggtgg
     1501 tctacgcgac gtccgagaag ttcaccaacg agttcatcac ctcgatccag cagggcaaga
     1561 tcgacgagtt ccgcgcccgc taccgtcgga tcgacctcct cctcatcgac gacatccagt
     1621 tcatcgccga caaggaacgg acccaggagg agttcttcca cacgttcaac gccatccacg
     1681 aggacggcaa gcagatcgtg ctgtcgtccg accggccgcc caaggcgatc ctgaccctcg
     1741 aggagcggct gcgcagccgg ttcgagtggg gcctgatcgc ggacctgacg gcgccggatc
     1801 tcgagacccg gatcgccatc ctccgggcca aggccgagga aggcgcggtc ccgatcacgt
     1861 ccgacgtcat cgagttcatc gcccggaagg tcgtgagcaa catccgcgag ctcgagggcg
     1921 ccctcaaccg gatcgtcgcg tacgcctcga tgggcgcgat gccgatctcg atcgagctcg
     1981 cccaggcggt cctctccaac gtcctctaca accccaagaa gcgacaggtg accccggagc
     2041 gcat
//
LOCUS       DATDDI010000013         3067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_478954, whole genome shotgun sequence.
ACCESSION   DATDDI010000013 DATDDI010000000
VERSION     DATDDI010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478954"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(251..1414)
                     /locus_tag="VIU37_00225"
     CDS             complement(251..1414)
                     /locus_tag="VIU37_00225"
                     /inference="COORDINATES: protein motif:HMM:NF045169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEY6012390.1"
                     /translation="MVDGTVYGYRRENGRVGVRNHVAIIPVDDLSNAACRSVAAQVQG
                     TLALPHAYGRLQYGEDLELHFRTIIGTGANPNVAAAIVIGIEPNWTQRIADGIAATGK
                     PVAAFSIEGFGDLEVVRQASHEAQRLVQWASEQSREPCPVADLWVSIKCGESDTTTGL
                     ASCPTVGVVVDRLVDEGATVFFGETPELTGGEHLIAERMATPELRERFLDAYQGYVGA
                     IEANGADLFGSQPTQGNIAGGLTTIEEKALGNIEKTGTRPIVGVLAPAQAPSNGTRGL
                     YFMDSSSAAAEHITLMCAGGAVLHVFPTGQGNVVGHPVEPVIKLTGNPKTARTMPEHV
                     DLDVSGLLRRELTLDDAGDRLLELVLRTANGRLTAAETLGHREFALTRLYQSA"
     gene            complement(1408..1686)
                     /locus_tag="VIU37_00230"
     CDS             complement(1408..1686)
                     /locus_tag="VIU37_00230"
                     /inference="COORDINATES: protein motif:HMM:NF020250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEY6012391.1"
                     /translation="MHSFLIHKRGDHVGVAVDDIEPGQTILGVFMDDDSTVEIEARDP
                     VPLGHKIAVAAITPDEPVIEYGIPIGRSPEGFAPGQHVHTHNLRSARW"
     gene            1812..2780
                     /locus_tag="VIU37_00235"
     CDS             1812..2780
                     /locus_tag="VIU37_00235"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-terminal binding protein"
                     /protein_id="HEY6012392.1"
                     /translation="MHAKTVAILGTRYSDFSIEEAVLAPAGATIVAGPGSTADEIAAV
                     AWDADVVIAGSGPRFDAEALSRLRCRGIVRSGVGVETIDLDAARSNGIWVARVADYGT
                     DAVSLHAVTLALAALRRLVQADRRVRAGEWGFAPLRPLRLPEALRAGVLGFGRIGRRT
                     AELMAGLGFTVAAYDPVVPIDLPGVEARPLARLLEESDLLTLHAPAPADGSPLLGPDE
                     LARMKPGSILVNTSRGSVVDQDALVAGLLRGTPGFAALDVFSQEPPPAALFEPVAEQV
                     ILTPHMAWYTEESERDLRTKAAQEALRLLEGRRPLEVVVEPEAAPA"
     gene            2777..>3067
                     /locus_tag="VIU37_00240"
     CDS             2777..>3067
                     /locus_tag="VIU37_00240"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEY6012393.1"
                     /translation="MTADIRKLASPDVAEAVAANPVAVIPFGSIEQHGSHLPCGTDTL
                     IADRLGEAVAERLNALYVPFGPYGVTPIHAGRPGTITLSPATFESLLAEICSE"
BASE COUNT          392 a         1107 c         1074 g          494 t
ORIGIN      
        1 agcgtcgtct tgccgcagcc gctcggtccg agcaccgaga cgaacgctcc gggctcgatc
       61 gcgaagtcca cgtcggcgag cacgttcagc tcgccgaacc atttttcgac gtgccggcac
      121 gtaaccgacg ctccggtcgc ctggtcgatg gtggtgtgtc tcgctggggc cgtggccatt
      181 gcggtccgcg tcgcaaacga ttgcggatgc gcgaccgtaa cagggcttcg gaagggtgtc
      241 aatcggttcc ctatgcgctc tggtacaagc gggtcagggc gaattcgcgg tgcccgagcg
      301 tctcggccgc cgtcagcctt ccgttggcgg tccgcagcac cagctcgagc agtcggtcgc
      361 ccgcgtcgtc gagcgtcagt tcccgcctca gcagcccgct gacgtcgagg tcgacgtgct
      421 ccggcatcgt ccgcgccgtc ttcgggttcc cggtcagctt gatcacgggc tcgacggggt
      481 ggccgacgac gttcccctgc ccggtcggga acacgtgcag gacggcgccg ccggcacaca
      541 tcagcgtgat gtgctcggcc gccgccgacg agctgtccat gaagtagagg ccgcgtgtgc
      601 cgttcgacgg cgcctgcgcc ggcgcgagca cgccgacgat cggccgcgtc cccgtcttct
      661 cgatgttccc cagcgccttc tcctcgatcg tcgtcaggcc gccggcgatg tttccctgcg
      721 tcggctgcga gccgaacagg tcggcgccgt tggcctcgat cgccccgacg tagccctggt
      781 aggcgtcgag gaagcgctcg cgcagctcgg gcgtcgccat cctttccgcg atcaggtgct
      841 cgccgccggt cagctccggc gtctcgccga agaagaccgt cgcgccctcg tccacgagcc
      901 gatcgacgac gactccgacg gtcgggcacg aggcgagccc tgtggtcgtg tccgactcgc
      961 cgcacttgat gctgacccag agatcggcta cgggacaggg ctcgcggctc tgctccgatg
     1021 cccattgcac gagccgctgt gcctcgtggg acgcctgccg gacgacctcg aggtcgccga
     1081 agccctcgat cgagaacgcg gcaaccggct tgcctgtggc ggcgatcccg tccgcgatcc
     1141 gctgcgtcca gttcggctcg atcccgatca cgatcgcggc tgcgacgttc gggttcgccc
     1201 ctgtgccgat gatcgtccgg aagtgcagct cgaggtcctc gccgtactgg agccggccgt
     1261 aggcgtgcgg gagcgccagc gtgccctgca cctgggctgc caccgaccgg caggcggcgt
     1321 tcgagaggtc gtccaccggg atgatcgcga cgtgattcct gacgccgacg cggccgttct
     1381 cgcgccggta gccgtagacg gtcccgtcta ccatcgggcg ctcctcaggt tgtgggtgtg
     1441 aacgtgctgg ccgggcgcga atccctcggg agagcgcccg atcgggatcc cgtactcgat
     1501 caccggctcg tcgggcgtga tcgccgcgac cgcgatcttg tggccgagcg gcaccgggtc
     1561 gcgcgcctcg atctcgaccg tcgagtcgtc gtccatgaag acgccgagga tcgtctgccc
     1621 cggctcgatg tcgtcgaccg cgacaccgac gtgatcgccg cgcttgtgga tcagaaacga
     1681 gtgcacgtct cctcctgtgt gcctgcgctg ggtggcctgg tcgcgggatc atctcgcgcc
     1741 ggcgcttgca atgcaaacga ttgccgggtt agggtgccct ccttgcctcg gtgagcctcg
     1801 acaggagggc gatgcacgcg aagacggtgg cgattctcgg cacgcggtac agcgacttct
     1861 cgatcgagga ggctgtcctc gcaccggccg gcgcgaccat cgtcgccggg ccggggtcga
     1921 cagcggacga gatcgccgcc gtcgcctggg acgccgacgt cgtgatcgcc ggctcgggcc
     1981 cgcgtttcga cgcggaggcg ctctcgcggc tccgctgccg gggcatcgtc cgctcgggcg
     2041 tcggcgtcga gacgatcgac ctcgacgccg cccgcagcaa cggcatctgg gtcgcccgcg
     2101 tcgccgacta cggcaccgac gccgtctcgc tgcacgcggt gacactcgcg ctcgctgcgc
     2161 tgaggcggct cgtgcaagcc gaccgccgtg ttcgcgcggg ggagtggggc ttcgccccgc
     2221 tgcggccgct gcggctgccg gaggcgctcc gtgcgggcgt gctcggcttc gggcgcatcg
     2281 gccgccgcac ggcggagctc atggccgggc tcgggttcac tgtcgcggcc tacgatcccg
     2341 tggtgccgat cgaccttccc ggcgtcgagg cgcggccgct cgcgcgcctg ctcgaagaga
     2401 gcgacctcct gacgctgcac gcgccggcgc cggcagacgg ctcgccgttg ctcggccccg
     2461 acgagctcgc ccggatgaag cccggcagca tcctcgtcaa cacctcgcgc ggctcggtcg
     2521 tcgaccagga cgcgctcgtg gcgggactgc tgcgggggac ccccggcttc gccgcgctcg
     2581 acgtcttctc gcaggagccg ccgccggcag cgctgttcga gccggtggcc gagcaggtga
     2641 tcctgacgcc gcacatggcc tggtacaccg aggagtccga gcgcgatctg cgcacgaagg
     2701 cggcacagga ggccctgcgg ctgctcgagg gccggcgtcc gctcgaggtg gtcgtcgagc
     2761 ccgaggcggc gcccgcgtga ccgccgacat ccggaagctg gcgagtcccg acgtcgccga
     2821 ggcggtcgcc gccaatcccg tcgccgtgat cccgttcggc agcatcgagc agcacggctc
     2881 ccacctgccc tgcggcaccg acacgctgat cgcggaccgg ctcggcgagg cggtcgccga
     2941 acggctgaac gcgctctacg tcccgttcgg cccctacggc gtcacgccga tccacgcagg
     3001 gcggccgggg acgatcaccc tcagcccggc gacgttcgag agcctgctcg cggagatctg
     3061 ctccgag
//
LOCUS       DATDDI010000014         5351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_291648, whole genome shotgun sequence.
ACCESSION   DATDDI010000014 DATDDI010000000
VERSION     DATDDI010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5351
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291648"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..444)
                     /locus_tag="VIU37_00245"
     CDS             complement(19..444)
                     /locus_tag="VIU37_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012394.1"
                     /translation="MTTPVSGPEPDASTEPPASPPVDDRAGASYFTIEGRQAPALFVT
                     GWLASIVGVVIIAIGVSADRGLASALALLGGLLLVSIGLVAAAGSQGIDRRARGMTGY
                     AGPPRKQAPCARETKSTSQRGVDHAKPRSGSLINVGANG"
     gene            complement(441..1154)
                     /locus_tag="VIU37_00250"
     CDS             complement(441..1154)
                     /locus_tag="VIU37_00250"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY6012395.1"
                     /translation="MDQILAQIGDTIASIFSSPVLQFGLRAIGIYLVILWLASAYWAF
                     RDMQQRSDNAILPYLAASGIIVFTPLFFVLAVWVYKIVRPHEKIGEVWERNLAEEALL
                     AEVEAIHHCPTCERRIDDEWIICPTCRTRLNRVCPNCSRLVGLDWSLCAWCGKDFERR
                     PVAAVGLEPLPGVREPAGRIAAVMPDAAPRPESTTPPAVRTSVRPSTASRGTGSSRAT
                     GPARAAGGVPSAQDPLPER"
     gene            complement(1246..2214)
                     /locus_tag="VIU37_00255"
     CDS             complement(1246..2214)
                     /locus_tag="VIU37_00255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012396.1"
                     /translation="MNRGAALIGALLVTLASPATWPLALAAFLLRGGLLVVALPILVL
                     PTPVGLGNLLAPSLTAFVFGGVTFELAAMVATIVLAVLAWLVAGGILAAILEAEAARI
                     VAAHEEVAPPAGVVVHQLAVDELSGSGPARVARRRRTEAVRVFLARLVAHLPLGAVLV
                     WGAVQVVAVTYRELTNPADVATPLVWRVLLASPEVVAAVVLTWMVGQAVGALAARRLV
                     LARGGILQALRDASVTLVRRPVVVLADFWLPTLALALALAPSALAAASAGDVVREAMN
                     APDDPLQLLLAVLLFVSLWVVGLVLTAVICAWRAAVWTVGFGEAPR"
     gene            complement(2211..>5351)
                     /locus_tag="VIU37_00260"
     CDS             complement(2211..>5351)
                     /locus_tag="VIU37_00260"
                     /inference="COORDINATES: protein motif:HMM:NF015644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HEY6012397.1"
                     /translation="DDGEPAADEPEPRPIFEAPGRRGGPPRRRGPGGPDDGNDFGGRA
                     ARAGRRVGLIAIIVAILALVLLFGVGIDLWTDVLWYQSVGFDSVFWTRLTASLGLFAG
                     AGLLAAVVLFGNLWLARRLSPPPAEGGRGSLRGFVDRLNEAAAQAGEPRRGRPGSPFG
                     DGRGAYGRPPAVVFETGELPDLSPLAGVALVALAVLVALGVGASVGGAWQTVLLWANR
                     VPFSPDAATAVTDPIFGKDISFFLFELPFLRLVQGLFNGLVVAALIISLAQYLIAASR
                     GGLVFSTQVRVHLGVLAGLFLLSVAFGYQLDKFELVYSTRGIATGVSFTDQNAQFFAY
                     DALTVISGIAAALLVGGAFTRMLWPLGLTIAVWFLASIVIGRLYPEAIQRFTVEPNQY
                     AQEQRYIGNNIAMTRLAYDLNGWKDQPFKGDDVLTQQDITDQADTFASARLWDPRPLR
                     TTLDQLQTVRKYYDFTDVDTDRYTIDGKERQVMLSARELALEQNPNATGWVNQRIIYT
                     HGIGAAMVPVNQVGSEGQPDLIISNLPPVSTGGAPKISQPRIYFGERPSSYVVVGARQ
                     AEFDYPTGESDTGGSIGTQTNWTGKTGIHLDNTLMRLLFGLRFRDLDLLISDQVTRDS
                     QLLFHRSLSDRLSLIAPFLRFDKDPYVVIDDAGRLVYVQDAFTTSDRFPNAQAFDPTS
                     LAGTGLGSDPFDYIRNSVKITVDAYDGTMHFYISDPNDPIIRDYAAIFPKLFEPISAM
                     PADLRAHVRVPEELFNVQTRVFGRYHVTDTQQFYRTDDLWTVPTQSSEQTLPSEAYYV
                     VMRLPGQTGVEFLLLQPMVPTSRPNMIAWVAARMDGANYGSTLVYRFPADTTIFGPAQ
                     IEARIDQDPTISAQITLWSQSGSTVVRGNLIVVPLDNSLIYLQPVYLQSTGSAFPEFK
                     RIVVASPRQVVWSDTLGGALNLLLAAEGGAAPGPSPTPAPTPGPSASPGPSASAGPGP
                     VVTPSPSTGLPEDIPGLVAYANSHFELAQTALRNGDFAKYGSEIALVQAALQRLQVLA
                     PGLASPVPGASASPTP"
BASE COUNT          851 a         1793 c         1999 g          708 t
ORIGIN      
        1 tggtccaacg gcgagacttc atccgttggc gccgacgttt atcagcgacc cagatcttgg
       61 tttcgcatga tcaacgcccc gttgacttgt gctcttggtt tctcgagcgc atggcgcttg
      121 cttacgaggg ggaccggcat agccggtcat gccgcgggca cggcgatcga tcccctgcga
      181 gccggcggcg gccaccaggc cgatcgagac gaggaggagc ccgccgagca gggccagcgc
      241 ggaggcaaga ccccggtccg ccgagacgcc gatcgcgatg atgacgacgc cgacgatgga
      301 tgccagccag ccggtgacga acagtgcggg cgcctggcgg ccttctatcg tgaagtacga
      361 cgccccggcc cgatcgtcga ccggagggct cgcaggcggc tcagtcgagg cgtccggctc
      421 gggacccgag acgggcgtgg tcaacgttcg ggcagtggat cctgggcgga cgggacgccg
      481 ccggccgcgc gggccggtcc ggtcgcccgc gaggagccgg tgccgcgcga cgccgtggag
      541 ggccggacgc tcgtccgaac cgcgggcggg gtggtcgact ccgggcgcgg cgcggcatcg
      601 ggcatcaccg ccgcgatccg gccggcgggc tcacggacac cgggcaacgg ctcaagaccc
      661 accgccgcca ccgggcgacg ctcgaaatcc ttgccgcacc acgcgcacaa cgaccagtcc
      721 agccccacca gccggctgca gttcgggcag acgcggttga gtcgcgtccg gcaggtcggg
      781 cagatgatcc attcgtcgtc gatccggcgc tcgcacgtcg ggcagtgatg gatcgcctcg
      841 acctcggcca ggagcgcctc ctcggccagg ttccgctccc agacctcgcc gatcttctcg
      901 tgcggccgga cgatcttgta gacccacacc gcgaggacga agaacagcgg cgtgaacacg
      961 atgatcccgg acgccgcgag atacggcagg atcgcgttgt ccgagcgctg ctgcatgtcg
     1021 cggaacgccc agtacgccga ggccagccac aggatgacga ggtagatccc gatggcccgc
     1081 aggccgaact ggagcaccgg gctggagaag atgctggcga tggtgtcgcc gatctgcgcg
     1141 aggatctggt ccatgcgcct gggtgtggcc tccgtgcgct tcggctcgac cggcttcggg
     1201 cagcccgctc ggtcgccgct cgcgacggcc gcagtgtagc aggggctatc gcggagcctc
     1261 gccgaagccg accgtccaga ccgcggctcg ccacgcgcag atcaccgcgg tcaggacgag
     1321 cccgaccacc cacagggaga cgaacaggag cacggcgagg aggagctgga gcgggtcgtc
     1381 cggcgcgttc atcgcctcgc gaacgacgtc gcccgcggac gccgccgcga gcgccgacgg
     1441 agcgagggcg agcgcgaggg ccagcgtcgg cagccagaag tccgccagga cgacgaccgg
     1501 gcgacggacg agcgtcaccg acgcgtcccg gagcgcctgc aggatcccgc ccctggccag
     1561 caccagccgc ctggccgcga gcgcgccgac cgcctggccg accatccagg tcaggacgac
     1621 tgccgccacg acctcaggcg acgcgagcag cacccgccag acgagcggcg tcgcgacgtc
     1681 ggccgggttc gtcagctcgc gataggtcac ggcgacgacc tgcacggccc cccagaccag
     1741 gaccgcgccg agcggcaggt gcgcgacgag ccgggcgagg aagacgcgca cggcttccgt
     1801 ccgccgccgg cgggcgaccc gggcggggcc gctaccggac agctcgtcga ccgcgagctg
     1861 gtgcacgacc acgccggccg gtggcgcgac ctcctcgtgc gcggccacga tccgggcggc
     1921 ctcggcctcg aggatcgcag ccaggatgcc gcctgcgacc agccaggcca ggacggccag
     1981 gacgatcgtc gcgaccatcg cggccagctc gaaggtgact ccgccgaaca cgaacgcggt
     2041 gagcgacggc gccaggaggt tcccgagtcc gaccggggtc ggcagcacca ggatcggcag
     2101 ggccaccacg agaaggccgc cgcgcaacag gaatgccgca agcgccagcg gccaggtcgc
     2161 cggtgaggcc agggtcacga gcagcgcgcc gatgagcgcc gctccgcggt tcatggcgtc
     2221 gggctggccg atgcccccgg cacgggcgag gcgagacccg gagccaggac ctgcaggcgc
     2281 tggagcgccg cctggacgag cgcgatctcg gagccgtact tcgcgaagtc cccgttacgc
     2341 aatgccgtct gggcgagctc gaagtgcgag ttcgcgtagg cgaccaggcc cggaatgtcc
     2401 tcgggcaggc cggtcgaggg cgatggcgtg acgaccggtc ccgggccagc cgaggcagac
     2461 gggccgggcg aggccgatgg ccccggcgtc ggcgcgggcg tgggcgacgg gcccggggcc
     2521 gcgccgccct ccgcggcgag gagcaggttg agcgcgccac cgagcgtgtc gctccagacg
     2581 acctggcggg gcgaggcgac cacgattcgc ttgaactccg ggaaggccga cccggtcgac
     2641 tggaggtaga ccggctggag gtagatgagc gagttatcga gtgggacgac gatcaggttg
     2701 ccgcgcacga cggtgctgcc cgactggctc cacagcgtga tctgggcgct gatcgtcgga
     2761 tcctggtcga tgcgcgcctc gatctgagcc ggcccgaaga tggtggtgtc ggcggggaag
     2821 cggtagacca gggtcgagcc gtagttggca ccgtccatcc gggccgccac ccacgcgatc
     2881 atgttcggcc ggctggtcgg caccatcggc tggaggagca ggaactcgac cccggtctgg
     2941 ccggggaggc gcatgacgac gtaataggcc tcggacggca gcgtctgctc gctgctctgg
     3001 gtcgggacgg tccacaggtc gtccgtccgg tagaactgct gcgtgtcggt cacgtggtag
     3061 cggccgaaca cgcgggtctg gacgttgaac agctcctccg gcacgcggac gtgcgcgcgc
     3121 aggtcggccg gcatcgccga gatcggctcg aacagcttgg ggaagatggc ggcgtagtcg
     3181 cggatgatcg ggtcgttcgg gtcgctgatg tagaagtgca tcgtgccgtc ataggcgtcg
     3241 accgtgatct tgacgctgtt gcggatgtag tcgaatgggt cgctgccgag gccggtgccc
     3301 gcgagcgacg tcgggtcgaa cgcctgggcg ttcgggaacc ggtccgaggt cgtgaacgcg
     3361 tcctggacgt agaccagccg gccggcgtcg tcgatgacca cgtacgggtc cttgtcgaac
     3421 cgcaggaatg gcgcgatcag cgacaggcgg tcgctcagcg agcgatggaa gaggagctgg
     3481 ctgtcgcgcg tcacctggtc gctgatcagc aggtcgaggt cgcggaagcg cagcccgaac
     3541 aggaggcgca tcagcgtgtt gtcgagatgg atcccggtct tcccggtcca gttcgtctgg
     3601 gtcccgatcg atccgccggt gtcgctctcg ccggtcgggt agtcgaattc cgcctgtcgc
     3661 gcgccgacca ccacgtacga gctcggccgc tcgccgaagt agatccgtgg ctggctgatc
     3721 ttcggcgccc cgccggtcga cacgggcggg aggttgctga tgatcaggtc cggctggccc
     3781 tcgctgccga cctggttgac cgggaccatg gcggcgccga tcccgtgggt gtagatgatc
     3841 cgttggttca cccagccggt cgcgttcggg ttctgctcga gcgccagctc gcgggcggac
     3901 agcatgacct gccgctcctt gccatcgatc gtgtagcggt cggtgtcgac gtccgtgaag
     3961 tcgtagtact tgcgcacggt ctggagctgg tcgagcgtcg tccggagcgg ccgcgggtcc
     4021 cacagccggg cgctcgcgaa cgtgtcggcc tggtcggtga tgtcctgttg ggtcaggacg
     4081 tcgtcgccct tgaacggctg gtccttccag ccgttgaggt cgtaggccaa cctcgtcatc
     4141 gcgatgttgt tgccgatgta gcgctgctcc tgggcgtact ggttgggttc gaccgtgaac
     4201 cgctggatcg cttcgggata gagccgcccg atgacgatcg aggcgaggaa ccagaccgcg
     4261 atcgtcaacc cgagcggcca cagcatcctt gtgaaggcgc cgccgaccag cagggccgcc
     4321 gcgattcccg agatgacggt cagcgcgtca taggcgaaga actgcgcgtt ctggtcggtg
     4381 aagctcacgc cggtcgcgat gccgcgggtg ctgtagacga gctcgaactt gtcgagctgg
     4441 tagccgaacg ccaccgacag caggaagagc ccggccagga cgccgaggtg gacccggacc
     4501 tgggtggaga agacgagccc gccgcgtgac gccgcgatca ggtactgggc cagggagatg
     4561 atcagcgccg cgacgaccag cccgttgaac aggccctgga cgaggcggag gaacggcagc
     4621 tcgaacagga agaagctgat gtccttgccg aagatcgggt cggtgaccgc agtggcggca
     4681 tccggcgaga agggcacccg gttggcccac agcaggaccg tctgccaggc gccgccgacc
     4741 gaggcgccga cgcccagggc gacgagcacg gcgagcgcaa ccagcgcgac gccggcgagc
     4801 ggtgacaggt ccggcagctc gccggtctcg aagacgacgg ccggtgggcg gccgtaggcg
     4861 ccacgcccgt cgccgaacgg cgagcccggg cgcccccggc ggggctcgcc ggcctgggcg
     4921 gcggcttcat tgaggcggtc gacgaagccg cggagcgagc cgcgaccgcc ttcggccggt
     4981 ggtggcgaca ggcgtcgcgc gagccacagg ttgccgaaga gcacgaccgc ggcgagcagg
     5041 ccggccccgg cgaacaggcc gaggctcgcg gtcaggcggg tccagaagac cgaatcgaag
     5101 ccgacgctct ggtaccacag cacgtcggtc cagagatcga tcccgacccc gaacaggagc
     5161 acgagcgcga ggatggcgac gatgatcgcg atgaggccca cgcgacgacc ggcgcgtgcg
     5221 gcccgcccgc cgaagtcgtt gccatcgtcg gggccgccgg gccctcgccg ccgcggcgga
     5281 ccgccgcgcc gtccgggcgc ctcgaagatg ggacgcggct cgggctcgtc ggcggcgggt
     5341 tcgccgtcgt c
//
LOCUS       DATDDI010000015         4242 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_333326, whole genome shotgun sequence.
ACCESSION   DATDDI010000015 DATDDI010000000
VERSION     DATDDI010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333326"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..663
                     /locus_tag="VIU37_00265"
     CDS             <1..663
                     /locus_tag="VIU37_00265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012398.1"
                     /translation="GATTAASVTATSPVSATGTTAKVAAARWSGEFNLYRRTAFVTQK
                     DFTWCVAASVQMMVNIVRHRKDRSAATQQRMIRYAQASDHGPWGPGGGTDVTGWIAAL
                     RHFGAGRYRPVGARSAAAALRIAATAVRQTGRPAGMLVMDGRHAWVLHGFESRTDPRT
                     DRHARITSVRVSGPLYPVQQKHGYDLRPNTELSVRALARFFHPSEVGALAGKYVVVVP
                     VH"
     gene            complement(708..1166)
                     /locus_tag="VIU37_00270"
     CDS             complement(708..1166)
                     /locus_tag="VIU37_00270"
                     /inference="COORDINATES: protein motif:HMM:NF020908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HEY6012399.1"
                     /translation="MSPQRRDPDGRIHTAHSWESLVERQIREAMDGGAFDGLPHQGER
                     LPLEDDSAAGEWAMAHRMLRNAGMAPPWIESDKEARRLLGEIEGLLGRASGAPAVSRD
                     RLRTELARLADDANRAILRLNSEAPTPRQHRRLVDVELMLVRLDRALAGG"
     gene            1243..>4242
                     /locus_tag="VIU37_00275"
     CDS             1243..>4242
                     /locus_tag="VIU37_00275"
                     /inference="COORDINATES: protein motif:HMM:TIGR03491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM0106 family RecB-like putative nuclease"
                     /protein_id="HEY6012400.1"
                     /translation="MDRIDGQPVYSATDLVAFLACEHLTQLERAAISGLVERPVRSDP
                     ELDVIRKRGFEHEARFLAGLRAEGRDPVTIELDGSAADRGDELRAAAARTVEAMAAGA
                     DVIYQATFFDGVFRGHADFLLRVEAPDRPSRWGPYHYEVADTKLARHVKASAVLQICS
                     YVDQLERLQGVRPAWLHVALGGSARTVERLRVDDYMAYYRSARDRFLEAMANETPPAY
                     PPVGTYPEPVDHCEVCRWAAACATRRRADDHLSLVAGISGRQRRALTERGVTTLEALG
                     ELPLPMTPRLEGTSEGALLRVREQARIQLEGRRELWPRYELLLPPAGQPAAPERGLAS
                     LPPPSPGDLFFDIEGDPYAFDDGLDYLFGVLETDGTFHAFWSREDDGEFSLSAEQRAF
                     ERLIDFFMARLELDPGLHIYHYAPYEPTALKRLMGRHGTREAEIDRLLREGVLVDLLR
                     AVRQSMRASVESYSIKKMEAFYGFTREIDLRDAGSSIVAFEAWLELAEGERPAATHLE
                     RIERYNRDDVISNRQLRDWLETLRDELAAQTGLAVPRPAPRVEPLPPELTARQAQTQA
                     LVERLADPAAVGTDPAARTPEQHARWLLAQLLGWHRREDKSMWWEFHRQMDLNPEQLV
                     DENEPVGLLDPVGPLGPAARGKQTWRYTFPAQEYDLGRIGGRLFDPSEKQADPDASPF
                     DWAIGDLVAVDPVTWTVDIRRSPEAPHPRAVVALPWVPTPEHQARLFEMGEWVADHGF
                     DPPGPHQAAFDLLLRRPPRLGIMNGAELRLPGEEGLHAARRLAVTLDRTVLAIQGPPG
                     SGKTFSGARMIATLLRAGKRVGITSNSHKVIGNLLAKALEAAEAEGIPVRAVQRGEAA
                     QVLDHPLVTRADNPGQAADRLADGRANLAAGTSWLWTSPKLRDAVDVLFVDEAGQISL
                     ANVLAVSGAAASLVLLGDPQQLDQPLRGSHPPGADRSALAHVLGDEATMPPDRGLFLE
                     TTWRLHPALCDYTSEAFYDDRLEPEPHL"
BASE COUNT          575 a         1577 c         1514 g          576 t
ORIGIN      
        1 ggggcgacca cagcggcgtc ggtcacggcc acgtccccgg tcagcgccac aggcaccacg
       61 gcgaaggtgg ccgccgcgcg gtggtcgggc gagttcaacc tgtatcgcag gaccgcgttc
      121 gtcacgcaga aggacttcac ctggtgcgtc gcggcgtccg tccagatgat ggtcaacatc
      181 gtccggcacc ggaaggaccg gagcgcggcg acccagcagc ggatgatccg ctacgcacag
      241 gccagcgacc acggcccgtg ggggccgggc gggggcacgg acgtcaccgg gtggatcgcc
      301 gcgctccggc atttcggcgc gggccggtac cggccggtcg gcgcgcgttc cgccgccgcc
      361 gcgctgcgga tcgccgccac ggcggtgcgc cagacggggc ggccggccgg catgctcgtg
      421 atggacggcc ggcatgcctg ggtcctgcac ggcttcgaga gccgcaccga tccgcggacg
      481 gaccggcatg ccaggatcac ctccgtccgg gtcagcggac cgctgtatcc ggtccagcag
      541 aagcacggct acgaccttcg gccgaacacc gagctgtcgg tccgggcgct ggcgcgcttc
      601 ttccacccct ccgaggtcgg cgcgctggcc ggcaagtacg tggtggtcgt gccggtccac
      661 tgaccggcgg ggcggcgcgg ccgtcgcccg cggcccgtcg ctctcggtca gccgccggcg
      721 agcgcgcgat cgagccgcac gagcatcagc tcgacatcga ccaggcgccg atgctgacga
      781 ggcgtgggcg cctccgagtt gagccgcagg atcgcccggt tggcgtcatc ggccagccgc
      841 gcgagctcgg ttcgcagccg gtcgcgcgag accgccggcg ccccgctcgc ccgcccgaga
      901 agcccctcga tctcgcccag gagccgcctc gcctccttgt ccgattcgat ccagggcggc
      961 gccatgccgg cattgcgcag catccgatgg gccatcgccc attcgcccgc ggccgagtcg
     1021 tcctcgagcg gcagccgctc gccctggtgc ggcagcccgt cgaaggcgcc gccgtccatc
     1081 gcctcgcgga tctgccgctc gacgaggctc tcccagctgt gcgcggtgtg gatcctgccg
     1141 tcgggatcgc gtcgctgcgg gctcacggcg ggatggtacc gggagtctgc gtcgcgtcgc
     1201 tgacaggcga ggtgtcactc cccgctgcta cggttcgaga cgatggatcg tatcgacggg
     1261 cagcccgtct actcggcaac ggacctcgtc gcctttctcg cctgcgaaca cctgacccag
     1321 ctggaacggg ccgccatctc cgggctggtc gagcgaccgg tccgcagcga tccggagctg
     1381 gacgtcatcc gcaagcgcgg gttcgagcac gaggcgcgct tcctcgcggg cctgcgggcg
     1441 gagggtcgcg acccggtcac gatcgagctc gacggctcgg ctgccgaccg cggcgacgag
     1501 ctgcgcgccg cggcggcccg caccgtcgag gcgatggcgg ccggtgcgga cgtcatctac
     1561 caggcgacgt tcttcgacgg cgtgttccgg ggccacgccg acttcctcct ccgggtggag
     1621 gcgccggacc gaccctcccg ctgggggccg tatcactacg aggtcgccga caccaagctg
     1681 gcgcggcacg tgaaggccag cgcggtcctc cagatctgct cgtacgtcga ccagctcgag
     1741 cggctccagg gcgtccgtcc cgcgtggctg cacgtcgcgc tcggtggcag cgcccgtacg
     1801 gtcgagcggc tccgggtcga cgactacatg gcctactacc gcagcgctcg cgaccgcttc
     1861 ctggaggcca tggcgaacga aacgccgccg gcctacccgc ccgtggggac gtacccggaa
     1921 ccggtggacc attgcgaggt ctgccgctgg gccgcggcct gcgccacgcg ccggcgcgcc
     1981 gacgaccacc tcagcctcgt tgccgggatc tcgggccgcc agcgtcgcgc cctgaccgaa
     2041 cgcggcgtga cgacgctcga ggcgctcggc gagctgccgc tgccgatgac cccgcggctc
     2101 gagggcacga gcgaaggcgc gctcctccgc gtccgcgaac aggcgaggat ccagctcgaa
     2161 gggcggcgcg agctgtggcc gcgctacgag ctgctgctgc cgcccgccgg ccagccggcc
     2221 gcgcccgaac gtggcctggc gtcactgccg ccgccgtcgc cgggggacct gttcttcgac
     2281 atcgagggcg atccgtacgc gttcgatgac ggcctcgact acctgttcgg cgtgctcgag
     2341 acggacggga ccttccacgc cttctggtcg cgcgaggacg acggggagtt ctcgctgtcc
     2401 gccgagcagc gcgcgttcga acgattgatc gacttcttca tggcccgtct cgagctggac
     2461 ccgggcctgc acatctacca ctacgcgcca tacgagccga ccgcgctcaa gcggctgatg
     2521 ggccgccacg ggacccgcga ggcggagatc gaccggctcc tccgcgaggg cgtgctggtc
     2581 gacctgttgc gggcggtccg ccagtcgatg cgcgcctcgg tcgagagcta ttcgatcaag
     2641 aagatggagg cgttctacgg attcacccgg gagatcgacc tgcgcgacgc gggttcgagc
     2701 atcgtcgcct tcgaggcgtg gctcgagctc gcggagggcg agcgtccggc cgcgacgcac
     2761 ctcgagcgca tcgagcggta caaccgcgac gacgtcatct cgaaccggca gctgcgcgac
     2821 tggctcgaga cgctgcgcga cgagctggcg gcgcagaccg ggctggcggt tccgcggccg
     2881 gcgccccggg tcgagccgct gccgcccgag ctgaccgcac gccaggccca gacccaggcg
     2941 ctggtcgagc gtctcgcgga cccggcggcc gtcggaacgg acccggcggc ccggacgccg
     3001 gagcagcacg cccgctggct cctggcccag ctcctcggct ggcatcgccg cgaggacaag
     3061 tcgatgtggt gggagttcca ccggcagatg gacctcaacc ccgagcaact ggtcgacgag
     3121 aacgagccgg tcggcctgct cgacccggtc ggtccactgg ggccggccgc ccgcggcaag
     3181 cagacgtggc gctacacctt cccggcccag gagtacgacc tcgggcggat cggcggccgc
     3241 ctcttcgacc cgtccgagaa gcaggccgac cccgacgcct cgccgttcga ctgggcgatc
     3301 ggcgacctgg tcgcagtgga tcccgtgacg tggacggtgg acatccgccg ctcgccggag
     3361 gccccgcacc cgcgcgccgt ggtcgccctg ccgtgggtgc ccacgccgga gcaccaggcg
     3421 cgtctgttcg agatgggcga atgggtcgcc gaccacggct tcgacccgcc gggtccccat
     3481 caggccgcat tcgacctgct cctccggcgg ccgcccaggc tcgggatcat gaacggcgcc
     3541 gagctccgac tccccggcga ggaagggctc cacgcggcgc gccggctggc ggtcaccctc
     3601 gaccggaccg tcctggcgat ccagggaccg ccaggatccg gcaagacctt cagcggcgcc
     3661 cggatgatcg ccacattgct gcgggcgggc aagcgtgtcg ggatcacgag caacagccac
     3721 aaggtcatcg ggaacctgtt ggccaaggcg ctcgaggcgg ccgaggccga aggtatcccg
     3781 gtccgggcgg tgcagcgcgg cgaggccgcg caggtcctcg atcacccgct cgtcacccgt
     3841 gctgacaatc ccgggcaggc cgccgaccgc ctggcggatg ggcgggccaa cctcgccgcc
     3901 gggacgtcgt ggctgtggac gtcgccgaag ctccgcgacg cggtcgacgt cctgttcgtc
     3961 gacgaggccg gccagatctc gctcgccaac gtcctggcgg tgagcggcgc ggccgccagt
     4021 ctcgtcctcc tcggcgaccc acagcagctc gaccagccgc tccgcggctc gcatccgccg
     4081 ggcgccgatc ggtcggcgct cgcccacgtc ctgggcgacg aggcgaccat gccgcccgac
     4141 cggggcctct tcctcgagac gacgtggcgg ctgcatccgg ccctgtgcga ctacacgtcg
     4201 gaggcgttct acgacgatcg gctggagccg gagccccatc tc
//
LOCUS       DATDDI010000016         2246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_166838, whole genome shotgun sequence.
ACCESSION   DATDDI010000016 DATDDI010000000
VERSION     DATDDI010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166838"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..562
                     /locus_tag="VIU37_00280"
     CDS             <1..562
                     /locus_tag="VIU37_00280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012401.1"
                     /translation="TATALAACSTAGSSEPAPSSGVASVPGTAGEPASGSAGALAGGG
                     GGTAGSAVTDPCTLLTQAEVTAAVGKPVGPGSTADNPNSCDFGYPANYVPDVQAGVDF
                     IDGSLDEYCSDTGASAVGMTIEPVGGLGDGACFIHVGSLRVGSSLTFSKNGRLFQTFA
                     DLGSTSSIDDIKAADTTLAKDVLARL"
     gene            581..1243
                     /locus_tag="VIU37_00285"
     CDS             581..1243
                     /locus_tag="VIU37_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012402.1"
                     /translation="MRSKPAFVLISIAVVAVAACTGSAAAPSEATSTVNQAAPAPSQV
                     AVASLTATTAPVSSPSDSPTPAASAAPEPSPSADAGTQATPSPIDPCSLLTADEASKA
                     IGKKLSAGVSTLVDKDRECTFKSGLTEVKVIVAPPAPDAATAQAYWDKARSEIPAGVP
                     VKDVTGFDRAAYGSGSAGGASLSALFVIDGTTFFDLYCGFPMCSQAASVAAARLIVGR
                     LP"
     gene            complement(1336..1677)
                     /locus_tag="VIU37_00290"
     CDS             complement(1336..1677)
                     /locus_tag="VIU37_00290"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY6012403.1"
                     /translation="MTRYLISFSDGAMTFPEEDMPAVGAAAHAVMRDARAAGVWVSGG
                     GLRSQDEASLVGTDGTVVDGRSPESTRQLGGFAIVDVSTRDEALGWAARIAAACRCAQ
                     EVRELVPDPDA"
     gene            complement(1705..2136)
                     /locus_tag="VIU37_00295"
     CDS             complement(1705..2136)
                     /locus_tag="VIU37_00295"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY6012404.1"
                     /translation="MDAAYLDEVTARVGATVIGRGMYEAAEHWGDRNPFGVPVFVVTH
                     RPEEEPDSGEFTFVGDFAEAINLARAAAGGKDVTIGGGGDVIRQGLDAGLVDELAIIV
                     APVILGGGKRLFENFTKSLDLENLRVRQSRWATFLEFAVKR"
BASE COUNT          331 a          842 c          725 g          348 t
ORIGIN      
        1 gacggcgacc gccctggcgg cctgctcgac cgccgggtcg tcggagcctg caccctcgag
       61 cggcgtcgcc agcgtgcccg gcaccgcggg cgaacccgcg tccggcagcg ccggcgcgct
      121 cgcgggcggc gggggaggga ccgccggctc ggccgtgacc gatccatgca ccctcctgac
      181 gcaggccgag gtcaccgccg ccgtcggcaa gccggtcggg cccggcagca cggccgacaa
      241 ccccaattcg tgcgacttcg ggtacccggc caattacgtg ccggacgtcc aggcgggggt
      301 cgacttcatc gacggcagcc tggacgagta ctgcagcgac accggagcca gcgccgtggg
      361 catgaccatc gaacccgtcg gcggcctcgg tgacggtgcc tgcttcatcc acgtcggatc
      421 gctgagggtc ggctcgagtc tcacgttcag caagaacggc cgcctcttcc agacgttcgc
      481 cgacctcggc tcgacctcgt cgatcgacga catcaaggcg gccgatacga ccctggccaa
      541 ggacgtcctc gctcgtctgt agcaaaggag atctcgtccc atgcgctcca agcccgcgtt
      601 cgtcctcatc tcgatcgccg tcgtggccgt cgcggcctgc accgggtcgg ccgccgcgcc
      661 ttcggaggcg acgtcgaccg tcaaccaggc cgcacccgcc ccgtcgcagg tcgcggtcgc
      721 atcgctcacc gccaccaccg ccccggtctc gagcccgagc gacagcccca ccccggccgc
      781 gtcggcggcc cccgagccgt cgccgagcgc cgacgccggt acccaggcga ctcccagccc
      841 gatcgacccg tgcagcctcc tgacggccga cgaggcgtcc aaggcgatcg gcaagaagct
      901 cagcgccggc gtcagcacgc tggtcgacaa ggatcgcgag tgcacgttca agagcggcct
      961 gaccgaagtg aaggtgatcg tggccccgcc ggcgcctgac gccgcgaccg ctcaggccta
     1021 ctgggacaag gcgcgctcgg agatccccgc cggcgtcccg gtcaaggacg tgaccggctt
     1081 cgatcgcgcg gcgtacggct ccggctccgc cggcggcgcc tccctgagcg ccctgttcgt
     1141 gatcgacggg acgaccttct tcgacctcta ctgcggcttc ccgatgtgca gccaggcggc
     1201 cagcgtcgcc gccgcgcggc tgatcgtggg acgcctgccc tgacgccggt tcccgctcat
     1261 cgtggccagc ctggtgatcc gccagacgat tggcgagttc ctgcaggccc gggtcgggcc
     1321 agcgggagct cgccctcagg cgtccgggtc gggcacgagc tcgcggacct cctgcgcgca
     1381 gcggcaggcg gcggcgatcc tggctgccca tccgagcgcc tcgtcgcgtg tcgagacgtc
     1441 gacgatcgcg aatccaccga gttgcctggt gctctccggg gagcggccgt caacgaccgt
     1501 tccgtcggtc cccacgaggc ttgcctcgtc ctggctccgc aaccctccgc cggagaccca
     1561 cacgccggcg gccctggcgt cccgcatcac tgcatgtgct gccgcgccca cggccggcat
     1621 gtcctcctcg ggaaacgtca tcgcgccatc actgaacgag atcaggtacc gcgtcatcgg
     1681 tgactccttc ctcgcagccg ccgcctaccg cttcaccgcg aactcgagga acgttgccca
     1741 acgagactgc cggacgcgga ggttctccag gtccagcgac ttcgtgaagt tctcgaacag
     1801 gcgcttgccc ccgccgagga tgaccggcgc gacgatgatg gcgagctcgt ccaccaggcc
     1861 ggcatcgagc ccctggcgga tgacgtcgcc gccgccgccg atggtcacgt ccttgccccc
     1921 ggcagccgct cgggcgaggt tgatcgcctc ggcgaagtca ccgacgaagg tgaactcgcc
     1981 gctgtcgggc tcctcctccg gccggtgggt gaccacgaag accgggacgc cgaacgggtt
     2041 cctgtcgccc cagtgctcag cggcctcata catgccgcgt ccgatgacgg tcgcgccgac
     2101 ccgcgcggtg acctcgtcga ggtacgcggc gtccataact cagtgtttta tctttttgct
     2161 ttattcagac tggagtgtga tacacactta acctaaaggg tccatgtagc gaggaaataa
     2221 cttctgtgaa tgcctgttct ttcttt
//
LOCUS       DATDDI010000017         1999 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_270876, whole genome shotgun sequence.
ACCESSION   DATDDI010000017 DATDDI010000000
VERSION     DATDDI010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270876"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1902
                     /locus_tag="VIU37_00300"
     CDS             214..1902
                     /locus_tag="VIU37_00300"
                     /inference="COORDINATES: protein motif:HMM:TIGR00350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEY6012405.1"
                     /translation="MELPPESVELPPPDLDEQDLETLLGTSAGAIPIDQQEDVGPPPR
                     RRSRYPPAILDALIPGLGHLVVGRRGRALLFVAPLLVGIATTAWIVATTSAPRLAASL
                     LSNEVIWGLLAAQGLLLASRLIAVGSSLFDPALPRPGRRDLLPILLLFAFVIAPQAYA
                     GYATEVAREAADEIFVEPATAVVPAVSAAPDPSFLSTPAPGLPSPSPAPSVDPGSQRV
                     TALVIGVDSGVGRNTYLTDTMIIVSLDRATRTVSMLSIPRDMVDVPMADGRTYRDKIN
                     SLVAYARHHPEQFPGSDGTGFDVLMGALGTLTQVPIDYYAKVDLGGFVRVVDVLGGVD
                     VNVAHGFCDPGYDEYGFSNGFSIKAGLHHLNGQQALAYARVRKASGESDFTRAARQQE
                     VISGIRDSIVHGGFLNDPIGLLQAVGRTVETNVPRDLLPDLAELATQVGRDQTYRTVV
                     THPLVSSGFDVRGSIQLPDIAGIRALAAKLFPTDGSLPSADYGLPKPSGTTASGSGVG
                     GCNPAPKPKPTPTPKPKPTATPNLTPSPTSPASGTPAEPSPSIEIPPPADAPAG"
BASE COUNT          267 a          755 c          667 g          310 t
ORIGIN      
        1 tgctgcgcgt gcgcctgtca tcggctggcc ggcgcgccat tgaccacgtc gcgaactcgc
       61 gccacgccgc gacgaactcg tcttcgtggc cttgtctgac catccacatg ccgctcgtcc
      121 agaccatcga tcgcctccga cgctgcctcc ccggcgccgc aactgtagcc acggccgcgg
      181 ccggccggcc gggctctggt accctgccgc gcgatggagt tgccgccgga gagcgtggag
      241 ctgccgccgc ctgacctcga cgaacaggat ctcgagacgc ttctcggcac ctctgccggc
      301 gcgataccga tcgaccagca ggaggacgtc ggcccgccgc cccgccgtcg atcgcgatac
      361 ccaccggcca tcctggatgc gctgatcccg ggcctcggcc atcttgtcgt gggccgccgg
      421 ggccgagcgc tcctgttcgt ggcaccgttg ctcgtcggca tcgccacgac agcctggatc
      481 gtggcgacca cgtcggcccc gcgcctcgcc gcctctctcc tgtcgaacga ggtgatctgg
      541 gggctcctgg cagctcaggg cctgctcctc gcgtcgcggc tcatcgccgt cggatcgagc
      601 ctgttcgacc cagccttgcc gcggcccggc cggcgcgacc tcctcccgat cctgctcctg
      661 ttcgcgttcg tgatcgcccc gcaggcatac gccgggtatg cgaccgaggt cgctcgtgag
      721 gcggccgacg agatcttcgt ggagccggcc actgcggtcg tcccggccgt gagcgcagcg
      781 cccgacccga gcttcctgtc cacgccggcg ccaggcctcc cgtcgccgtc gccggcgccg
      841 tcggtcgacc ccggcagcca gcgggtcacc gcgctcgtca tcggcgtcga ttccggagtc
      901 gggcggaaca cctacctgac cgacaccatg atcatcgtct cgctcgaccg ggcgacccgg
      961 accgtgtcga tgctgtcgat cccgcgcgac atggtcgacg tcccgatggc cgatggccgg
     1021 acgtaccggg acaagatcaa ctcgctggtg gcctacgcgc gtcaccatcc ggagcagttc
     1081 ccgggctcgg acgggacggg cttcgacgtg ctgatgggcg cgctggggac gctcacccag
     1141 gtcccgatcg actactacgc gaaggtcgac ctcggtgggt tcgtccgcgt ggtcgacgtc
     1201 ctcggcggcg tcgacgtcaa cgtcgcgcac gggttctgcg acccgggcta cgacgagtac
     1261 ggcttctcca atgggttctc gatcaaggcc ggtctccatc acctgaacgg ccagcaggcc
     1321 ctggcctatg cgcgggtgcg caaggcgtcg ggcgagagtg acttcacccg ggcggcgcgc
     1381 cagcaggagg tgatctccgg gatccgggat tcgatcgtgc atggcggatt cctcaacgac
     1441 ccgattgggc tgctccaggc ggtcggcagg acggtcgaga ccaacgtgcc acgcgacctg
     1501 ctcccggatc tcgccgagct ggccacgcag gttggccgcg atcagacgta ccggacggtc
     1561 gtcacgcacc cgctggtgtc gtcggggttc gacgtccgtg gctccatcca gctcccggac
     1621 atcgccggga tccgggccct ggccgcgaag ctgttcccga ccgacggttc gctcccgtcg
     1681 gccgactacg ggctgccgaa gccatccggg accacggcca gcggcagcgg cgtgggcggc
     1741 tgcaatcccg cgccgaagcc aaagccgacc ccgaccccga agccgaagcc gaccgccacg
     1801 ccgaacctga cgccgagtcc gacgtcgccg gcctcgggaa cgcccgcgga gccgtcgccc
     1861 tcgatcgaga tccctccgcc cgccgacgca ccggccggtt gatcggcggg gcgcgttgta
     1921 gctgaggttc ggatgccggc acgccggcgc gctgaggcgc cgacccctat gcccgtcggt
     1981 gcgctcgccg gtcagcgga
//
LOCUS       DATDDI010000018         3946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_499808, whole genome shotgun sequence.
ACCESSION   DATDDI010000018 DATDDI010000000
VERSION     DATDDI010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3946
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499808"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..718)
                     /locus_tag="VIU37_00305"
     CDS             complement(<1..718)
                     /locus_tag="VIU37_00305"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEY6012406.1"
                     /translation="MSERRSIWVHVEQVDGRIADVSLELVGKARELADPLGYEVVGLL
                     CGHGVEALAWDVIRHGADRVLLADHPELAQYRTLPYARVAITEARRRRPEIFLVGGTS
                     NGRDLAPRVASALRCGLTADCTDLQVGDYHVKREGRTYENLLYQIRPAFGGNLVATIV
                     NPTTRPQMATVREGVMRMPAADATRTGVVEPVTPDFEPADFALEVLSREVRPSTVRLK
                     DAPVVVSGGAGISDADEFALL"
     gene            complement(725..1630)
                     /locus_tag="VIU37_00310"
     CDS             complement(725..1630)
                     /locus_tag="VIU37_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006847063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEY6012407.1"
                     /translation="MTERSPIDSVVLVKQVPDTHHITGDAMTRDGTMNRGVLPAIFNP
                     EDLNALEMALQIRERHGGTVTVLTMGPPKAANILRDALWRGADRVVLLTDRRFAGADT
                     LATSVVLQLAIEKIGRYDLVLAGRQAIDGDTAQVGPQTAEKLGIPQITYAEAVLDIAD
                     GRITARRALDAGTETVRCTLPCLLTVVGSANTPRPPSVRRQIARKLAATPGEYGALRT
                     RWPEFGTDEALDEYLAARDLRIPVWTADDIGAGADRIGLAGSPTQVHKVNFVVLESTE
                     SQTIDPNPEAIAAMVAELVHEYIVG"
     gene            complement(1812..2471)
                     /locus_tag="VIU37_00315"
     CDS             complement(1812..2471)
                     /locus_tag="VIU37_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012408.1"
                     /translation="MSAERILALALLAASGLLLLRLGPAAIRAWQIYAGTGRRRQRDA
                     TGRAPASPPAVSDRARLLADLGYHRLGETSLQLPVGERFAWILAADDAESYAILVDAP
                     RIGGMTGIYSAWTDGTWLCTIHPRGEAVDRSGLLVRIVPSTLAEAVTVQRAGLERLRQ
                     VHGEPRAIRTMGDMLALDADYRTRFGGSRLRPVTWRIVAPALLVALVAALSLVLVLVA
                     R"
     gene            complement(2526..3743)
                     /locus_tag="VIU37_00320"
     CDS             complement(2526..3743)
                     /locus_tag="VIU37_00320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012409.1"
                     /translation="MGLAVLALAGCGADMPASTDGPSSSLVVAQPSGAPVLGIDWGRA
                     TSVERPQNFEVASDAPAYNGTHPILRIPGQAMMADVTSLPGGGFAAVGYLPPDWVPAA
                     WTSPDGAAWSIHSMGATGFTFPVGLAAGTDGTVVAVGRSGRLPVAWTSVDGTGWQQHS
                     VPVLGADGVAERMTTIVADGHGYVAGGSVGPELFERHARFWTSADGADWRPVPDDPVA
                     FANAEVRAIVRIGTGFVALGVVGTAQAPTGAVSWTSPDGKTWSRIDDPSFVGGVVAAV
                     VAAPFGGLVAVGSDLDRRQAVAWTSPDGRRWTKAPGEASRQYPGFVWMTDALAIGDEV
                     VAIGEYQGLQRGTATSWVSRHGSHWEQARTAPVQEQGEFYAITPGGPGVIVVGSFGAP
                     DSYVPSVWLSPSR"
BASE COUNT          549 a         1449 c         1414 g          534 t
ORIGIN      
        1 ggagcagcgc gaactcgtcg gcgtcggaga tgccggcgcc gccggacacg accaccgggg
       61 cgtccttgag cctgaccgtg gacggccgga cctcccggct caggacctcg agggcgaagt
      121 cggccggctc gaagtccgga gtcaccggtt ccaccacgcc ggtccgcgtc gcgtccgcgg
      181 cgggcatgcg catcacgccc tcacggaccg tcgccatctg cggcctggtg gtggggttga
      241 cgatcgtcgc gaccaggttc ccgccgaatg ccggccggat ctggtagagc aggttctcgt
      301 acgtccggcc ctcgcgcttg acgtggtagt cgccgacctg gaggtcggtg cagtcggcgg
      361 tgagcccgca gcgcagcgcg ctcgcgaccc gcggcgcgag gtcgcgaccg ttggaggtgc
      421 cgccgactag gaagatctcg ggtcgtcgcc gtcgggcttc ggtgatcgcg acgcgggcgt
      481 acggcagggt gcggtactgg gccagctcgg ggtggtcggc cagcaggacc cggtcggcgc
      541 cgtggcggat gacgtcccat gcaagcgcct cgaccccgtg tccgcagagc aggcccacga
      601 cctcgtaccc gagcggatcg gccagctccc gggccttgcc gacgagctcc aggctgacgt
      661 cggcgatccg gccgtcgacc tgctcgacgt ggacccagat gctccgccgc tcgctcatga
      721 ccggctaccc gacgatgtac tcgtggacca gctccgccac catggcggcg atggcctcgg
      781 ggttggggtc gatggtctgg ctctcggtgc tctcgaggac cacgaagttc accttgtgga
      841 cctgggtcgg cgacccggcc agtccgattc ggtccgcgcc ggcgccgatg tcgtcggcgg
      901 tccagaccgg gatccggagg tcgcgagcgg ccaggtattc gtcgagcgcc tcgtcggtcc
      961 cgaactcggg ccaccgcgtc cgcagcgcgc cgtactcgcc gggcgtcgcc gccagcttgc
     1021 gcgcgatctg ccggcgcacg gacggcggac gcggggtgtt ggccgacccc acgacggtca
     1081 gcaggcaggg aagcgtgcag cggaccgtct ccgtgcccgc gtccagggcg cgccgggccg
     1141 tgatccggcc gtcggcgatg tcgaggacgg cctccgcgta ggtgatctgc gggatcccca
     1201 gcttctcggc cgtctgcggg cccacctggg ccgtgtcgcc gtcgatcgcc tggcgtccgg
     1261 cgaggaccag gtcgtagcga ccgatcttct cgatcgccag ctggagcacg acggaggtcg
     1321 ccagggtgtc cgcaccggcg aaccgtcggt ccgtcagcag gacgaccctg tccgcccccc
     1381 gccagagcgc gtcgcgcagg atgttggcgg ccttcggcgg gcccatcgtg agcacggtga
     1441 cggtgccgcc gtgacgctcc cggatctgca gcgccatctc gagggcgttc aggtcctcgg
     1501 ggttgaagat ggccggcagc acgccgcggt tcatcgtgcc gtccctggtc atcgcgtccc
     1561 cggtgatgtg gtgcgtgtcg ggcacctgct tgaccaggac cacgctgtcg atcgggctgc
     1621 gttcggtcat cgaatctccg aggatcgccg gccggccgcc gatggctggc gcgacccggc
     1681 ggccgtgcgc gtttgggtca ggatggcggc gggtcgcgcc gaacgcacgg gccattcgtc
     1741 ccggccggca gggccagtcg gttcgacgat tgcggcgtgc cggagccgtg gcctcgtcgc
     1801 cggccgttcg actagcgcgc caccagaacc aggacgagcg acagcgccgc gacgagggcg
     1861 acgagcaggg caggcgccac gatgcgccag gtcaccgggc gcagccggct cccgccgaac
     1921 ctcgtccgat agtcggcgtc gagcgcgagc atgtcgccca tcgtccggat ggcgcgcggt
     1981 tcgccgtgaa cctgccggag gcgctcgaga cccgcgcgct ggaccgtgac cgcctccgcg
     2041 agcgtgctcg ggacgatccg gaccaggagt cccgaccgat cgacggcttc gccgcgcggg
     2101 tggatcgtgc acaaccacgt gccgtcggtc caggcggaat agatgccggt catgccgccg
     2161 atccgcggcg cgtccacgag gatcgcgtac gactcggcgt catcggctgc caggatccag
     2221 gcaaagcgct cgccgacggg caactgcagg ctggtctcgc caagccggtg gtagccgaga
     2281 tccgccaaaa gccgggcccg gtcggagacg gcgggaggac tcgccggagc acggccggtc
     2341 gcgtcccgct gtcgccgcct gcccgtgccc gcgtagatct gccaggcacg gatcgcggcc
     2401 ggacccaggc ggagcagcag gaggcccgag gcggccagca gcgccagggc gaggatccgt
     2461 tcagcggaca cgcccggatc gtagcgacgc cggggccgac cgtcccgacc gatcgccccc
     2521 caccgtcagc gcgacggact gagccagacc gatgggacgt acgagtcggg ggcgccgaac
     2581 gagccgacca cgatgacccc gggcccgccc ggcgtgatcg cgtagaactc gccctgttcc
     2641 tggacgggag ccgtccgggc ctgctcccag tggctgccgt ggcgcgacac ccaggacgtc
     2701 gccgtcccgc gctgcaggcc ctggtactcg ccgatcgcga caacctcgtc cccgatggcg
     2761 agcgcgtcgg tcatccagac gaagccgggg tactgccgcg aggcttcgcc cggagccttc
     2821 gtccagcgac ggccgtccgg tgatgtccag gccacggctt ggcgccggtc gaggtccgag
     2881 ccgaccgcca ccagaccgcc gaagggtgcc gccaccacgg cggccacgac gccgccgacg
     2941 aacgagggat cgtcgattcg gctccaggtc ttcccatcgg gcgaggtcca gctgacggcg
     3001 ccggtcggcg cctgtgccgt gcccacgacg ccgagggcga cgaatcccgt gccgatgcgc
     3061 acgatcgccc gcacctcggc gttcgcgaag gcgaccggat cgtcgggcac cggccgccag
     3121 tcggcgccgt ccgcggacgt ccagaacctc gcatgccgct cgaacagctc gggaccgacg
     3181 gaaccgcccg cgacgtagcc atgcccgtcc gcgacgatcg tcgtcattcg ctcggccacg
     3241 ccgtcggcgc cgagtaccgg gaccgaatgc tgctgccacc cggtcccgtc gacgctcgtc
     3301 caggcgacgg gtagccggcc cgaccgaccg accgccacga ccgtgccgtc ggttccggcc
     3361 gccagcccaa ccgggaaggt gaaaccggtc gcacccatcg aatggatcga ccaggcggcg
     3421 ccgtcgggcg acgtccaggc ggcgggaacc cagtccggtg gcaggtagcc gacggccgcg
     3481 aacccgcccc cgggcaggct cgtcacgtcg gccatcatcg cctggccggg gatccgaagg
     3541 atcgggtggg tcccgttgta ggccggcgca tccgatgcga cctcgaagtt ctgcgggcgc
     3601 tccaccgagg tggcccgccc ccaatcgatc ccgagcaccg gggccccgga cggctgcgcg
     3661 accacgagcg aggacgacgg gccgtcggtc gacgccggca tgtccgcccc gcatccggcg
     3721 agggccagca cggcgaggcc catgaccgct gagcgtcccc cgattcgctt caggccgacg
     3781 cgtctccgca tgccgtcctg gtcacccgcg ccgcttcagc ttctcgggtc gagggcggcc
     3841 gacacgatcc ccgaccatcc cccaccctcc gcctcgatca gtcgttccag ctcgcccttg
     3901 tcgaggaaga tgccgcggca gtcctcgcac agctcgagga tcaggc
//
LOCUS       DATDDI010000019         2493 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_146025, whole genome shotgun sequence.
ACCESSION   DATDDI010000019 DATDDI010000000
VERSION     DATDDI010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146025"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..710
                     /locus_tag="VIU37_00325"
     CDS             <1..710
                     /locus_tag="VIU37_00325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012410.1"
                     /translation="LARQAVFEGDATLLMTLWAAAHFGPADMLAYLALSADPAAQAVL
                     QRTPPFLRDLLLYPYTTGLSFVQATQLRDGWAGVDDLYRRMPVSTEQVLHPEKYAADE
                     APIQVDLPADLAAQLGSGWTVPLEDTFGELELGYWLRESGVKPATATSAAAGWGGDRL
                     AVAKGPSGAWGVVIDTAWDTAADASEFADAANLAIAGLANPARVSSPAGTHVTVLVAS
                     SQDALLALDVIFGATGV"
     gene            complement(731..>2493)
                     /gene="argS"
                     /locus_tag="VIU37_00330"
     CDS             complement(731..>2493)
                     /gene="argS"
                     /locus_tag="VIU37_00330"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEY6012411.1"
                     /translation="PRTSDGPARVRWSAFPRPMWRRNADVTELPIRTQVRAAVERAWI
                     RAVASGVLPAIADDEARPVVDVERPADPAHGDFATNLAMKLARPYRLAPLAIAGPLAE
                     ALAHEAVADPGATPIATVEVAPPGFLNLRLTDRAIETTVADILAEPDAWGRVAALGRR
                     SVNVEFVSANPTGPLHIGNARGAFVGDLLCRVLEAGGRRVTREYYFNDSGGQIRNLGA
                     SVAALRRGEPLPEDGYKGDYVADLVAALPDDVWDSASAPGADTDETVGHWAAGRVREG
                     IERSLADLGVRFDVWTSEARLHDEGWVERAVQRLRDHGYVYEQDGAVWFRSTDFGDDK
                     DRVIYRSNGEPTYFAADIGYVTEKFSRGFDDLIYIWGADHHGTVARVRNAAEAMGYDR
                     DAVRMLLYSWVRFVRDGQEVSMSKRAGEYITLDELLAEVGVDAARWFFASRGATSAID
                     FDIELAKKQSNENPVYYVQYAHARIASIMRKAAEAGLTPGSGVEGALAGGPEAALARA
                     VARFPEVVEDAVAAEETQGITAYATELATTFHGFYRDARVVDAADPDRSAARLALASA
                     TRITLANALRLLGISAPESM"
BASE COUNT          329 a          914 c          897 g          353 t
ORIGIN      
        1 tgctcgccag gcaggcggtc ttcgagggtg acgccacgct gctgatgacg ctctgggccg
       61 ccgcacactt cggcccggcc gacatgctcg cgtacctggc cctgagcgca gaccccgccg
      121 cccaagccgt cctgcaacgg acgccgccgt tcctgcgtga cctgctcctc tatccgtaca
      181 cgaccgggct ctcgttcgtc caggcgaccc agctgcgcga cggttgggcg ggcgtcgacg
      241 acctctaccg gcgcatgccc gtgtcgaccg agcaggtgct ccacccggag aagtacgccg
      301 ccgacgaggc gccgatccag gtcgacctgc ccgcggacct cgccgcgcaa ctcgggagcg
      361 gctggaccgt gccgctggag gacaccttcg gcgagctcga gctcggctac tggctgcggg
      421 agtccggtgt caagcccgcg acggccacgt ccgccgcggc cggctggggc ggcgaccgtc
      481 tcgcggtcgc caagggcccg tccggtgcct ggggcgtggt catcgacacc gcctgggaca
      541 ccgcggccga cgcctccgaa ttcgccgacg ccgccaacct ggcgatcgcc ggcctggcga
      601 atcccgcccg ggtctcgtca cccgccggga cccacgtgac ggtcctggtc gcctcgagcc
      661 aggacgcgct gctggcgctc gacgtgatct tcggcgccac cggggtctga tcgccggccg
      721 gcgaccgccg tcacatcgat tcgggggcgg agatcccgag caggcgcagg gcgttcgcca
      781 gcgtgatgcg cgtggcggac gcgagtgcga gccgtgcggc ggagcggtcc ggatcggcgg
      841 cgtccaccac cctcgcgtcg cggtagaagc cgtggaacgt ggtggccagc tcagtggcat
      901 aggcggtgat cccctgcgtc tcctcggcgg ccacggcgtc ctcgacgact tcggggaacc
      961 gggcgacggc gcgtgccagg gcggcctccg gcccacccgc cagggccccc tcgacgccgc
     1021 tcccaggcgt cagccccgcc tcggccgcct tgcgcatgat cgaggcgatc cgggcgtgcg
     1081 cgtactggac gtagtagacg gggttctcgt tcgactgctt ctttgcgagc tcgatgtcga
     1141 agtcgatcgc ggacgtcgcg ccccgcgacg cgaagaacca gcgggcggcg tccacgccga
     1201 cctcggcgag gagctcgtcg agcgtgatgt actcgccggc ccgcttggac atcgagacct
     1261 cctgcccgtc gcgcacgaag cgcacccacg agtagaggag catccggacg gcatcccggt
     1321 cgtagcccat cgcctccgcg gcgttgcgca cgcgcgcgac ggtgccgtgg tggtcggcgc
     1381 cccagatgta gatgaggtcg tcgaagccgc ggctgaactt ctcggtcaca tagccgatat
     1441 ccgcggcgaa gtaggtcggc tcgccgttgg atcggtagat cacccggtcc ttgtcgtcgc
     1501 cgaagtcggt cgagcggaac cacaccgcgc cgtcctgctc gtagacgtag ccgtggtccc
     1561 ggagccgttg gacggcccgc tcgacccatc cctcatcgtg gagccgggcc tcgctcgtcc
     1621 acacgtcgaa gcggacgccc agatcggcca ggctccgctc gatgccttcg cgcacgcgcc
     1681 cggcggccca gtggcccacg gtctcgtccg tgtcggcgcc cggcgcggac gccgagtccc
     1741 acacgtcgtc cggcaaggcg gcgacgaggt cggccacgta gtcgcccttg tagccgtcct
     1801 cggggagcgg ttcgccccgc cgcagggcgg ccacggacgc ccccaggttc cggatctgcc
     1861 cgcccgagtc attgaagtag tactcgcgcg tgacgcgccg gccgccggcc tccagcacgc
     1921 ggcagaggag gtcgccgacg aaggcgccgc gagcgttgcc gatgtggagc gggccggtcg
     1981 gattcgccga cacgaactcg acgttgaccg aacgtcggcc gagcgccgcg acgcggcccc
     2041 aggcgtcggg ctcggcgagg atgtcggcga cggtcgtctc gatcgcccgg tcggtgagcc
     2101 ggaggttgag gaaccccggt ggcgcgacct cgaccgtggc gatgggcgtc gcgccgggat
     2161 cggccaccgc ttcgtgcgcg agggcttcgg cgaggggacc ggcgatcgcg aggggagcca
     2221 gccggtacgg ccgggccagc ttcatcgcca ggttcgtggc gaagtcgccg tgcgccgggt
     2281 cggccggccg ctcgacgtcg acgaccggcc gggcctcgtc gtcggcgatg gcgggcagca
     2341 caccggaggc cacggcccgt atccacgcac gctccaccgc ggcacggacc tgggttcgga
     2401 tcggcagttc ggtcacgtcg gcgttgcgcc tccacatcgg cctggggaac gcggaccatc
     2461 gtacccgcgc cggaccgtca ctggtcctgg ggg
//
LOCUS       DATDDI010000020         2686 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_479000, whole genome shotgun sequence.
ACCESSION   DATDDI010000020 DATDDI010000000
VERSION     DATDDI010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479000"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..901)
                     /locus_tag="VIU37_00335"
     CDS             complement(<1..901)
                     /locus_tag="VIU37_00335"
                     /inference="COORDINATES: protein motif:HMM:NF015535.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HEY6012412.1"
                     /translation="MRARDLGIVIGRGRPGPRNAITDVAGVRVGHTTLIDGDGPLVVG
                     RGPIRTGVTMIVPHDGDLYADTVYAGSHRLNGNGEMTGLEWIREAGGLNGPIGITNTH
                     SVGIVHDGILRNAVRTHPKGSSFWSLPVVAETWDGLLNDTDGFHVTMDHVDAALAAAG
                     DGPVPEGNVGGGTGMVCHEFKGGIGTASRVVPEAFGGWTVGVLVQANYGRRDLLRVDG
                     VPVGEAIPVGDVPSPYRPEDDEGPPETPPPGSGSIIVIVATDAPLLPHQCQRLAQRAG
                     LGIARMGGTGGNSSGDRFLCFATG"
     gene            955..2424
                     /locus_tag="VIU37_00340"
     CDS             955..2424
                     /locus_tag="VIU37_00340"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEY6012413.1"
                     /translation="MIPSTRSSGPVRLRRLRDSIAATRPIDLAEAFRDLPGLCLLESA
                     RPGRNARWTYLTADPVAVLESAAAGPDPFAVARRLVARLDRTVIVPADSPRFLGGLVG
                     YLGYDLGGVLERLPSIAPPDQDLPLLRLALHDWVVAWDRRTGHAWIGGRALDGDGHRL
                     ARRLDDVHARLSAWPRRPGAAGQDAAGSDGAHPRTGAAAGGSAAPLVFRSNLDRGEYQ
                     AAVQRVRDHIARGDIYQANLTRRLEAGFDADPWELYRRLRTGDPSLFSAFVDLGPSQL
                     TGRPRALLSASPEPFLSVDAGGQVKADPIKGTRPRGRDLAEDRALGCQLLTSAKDRAE
                     NVMIVDVLRNDLGRVCRPGTVRVPRLCRLERTATVQHLVSTVTGSLAEGRDAFDLLAA
                     AFPGGSITGAPKIRAMEILEGLEPVRRGPYTGALGWIGPDGAMQTSILIRTFVADGRR
                     LTLHVGGGITWKSDPAAEWEETVVKATGPLGAIGGVEVR"
     gene            2421..>2686
                     /locus_tag="VIU37_00345"
     CDS             2421..>2686
                     /locus_tag="VIU37_00345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012414.1"
                     /translation="MTRSHSLGSGSVWVDGRLLPADGPHLSVFDRGFQLGDGIFETLR
                     VRASHPTELAEHVARLRRSAIGLDIALPDDLEAQLARGIAGLLAA"
BASE COUNT          332 a         1011 c          965 g          378 t
ORIGIN      
        1 tgcccgtggc gaagcacagg aaccggtcgc cgctcgagtt gcccccggtc ccgcccatcc
       61 gggcgatccc cagaccggcc cgctgggcca ggcgctggca ctggtggggg agcagcggtg
      121 cgtcggtggc cacgatcacg atgatcgaac cggagcccgg cggcggtgtc tcgggcggac
      181 cctcgtcgtc ctccggccgg tacgggctgg gaacgtcgcc gaccgggatc gcctcgccga
      241 cgggcacgcc gtcgacccga agcaggtcgc gacggccgta gttggcctgg accagcaccc
      301 cgaccgtcca gccgccgaac gcctcgggga cgacgcgcga cgccgtcccg atcccgccct
      361 tgaactcgtg gcagaccatg ccggtgccgc cgcccacgtt gccctcgggg accggcccgt
      421 cgcccgccgc ggcgagcgcg gcatccacgt ggtccatcgt gacgtggaag ccgtccgtgt
      481 cgttgagcag gccgtcccag gtttccgcca ccacgggtag ggaccagaac gagctgccct
      541 tcggatgcgt ccggacggca tttcggagga ttccgtcgtg gacgatcccg acgctgtgcg
      601 tgttggtgat cccgatcggg ccgttcaggc cgccggcctc gcggatccac tcgaggcccg
      661 tcatctcgcc gttcccattg agccggtggc tgccggcgta gacggtgtcg gcgtacaggt
      721 cgccgtcgtg gggcacgatc atggtcacgc cggtccggat cggaccgcgt cccacgacca
      781 gcggaccgtc gccgtcgatc agggtggtgt ggccgacccg cacccccgcc acgtcggtga
      841 tcgcgttgcg gggtccgggc cgcccccggc cgatgacgat cccgaggtcg cgtgcacgca
      901 tgcccgagat cgtagcgagc cgtgaccgcc cgggttcggc cgtatcatcc ggcggtgatc
      961 ccctccactc gaagcagcgg tcccgttcgc ctccgacgac tgcgcgattc catcgccgcg
     1021 acccgtccga tcgacctcgc cgaggccttc cgcgatctcc cgggactctg cctgctcgaa
     1081 agcgcccggc ccggccggaa cgctcgctgg acctacctga ccgccgatcc cgtggcggtc
     1141 ctcgagtcgg ccgccgccgg ccctgacccg ttcgccgtgg cgcgccggct ggtcgcccgc
     1201 ctcgatcgga cggtcatcgt gccggccgac tcgccgcggt tcctcggcgg gctcgtgggc
     1261 tatctcggct acgacctcgg cggcgtgctc gagcggctgc cgtcgatcgc gccgcccgac
     1321 caggacctgc cgctcctccg gctggcgctc cacgattggg tcgtggcctg ggaccggcgg
     1381 accgggcacg cctggatcgg cggacgcgcg ctcgacggcg acgggcaccg gctcgcccgc
     1441 cggctggacg acgtccatgc ccggctcagt gcctggccgc gccgtcccgg cgccgccggg
     1501 caagacgccg ccgggagcga cggcgcgcac ccgcgaaccg gcgccgcggc cggtgggtcg
     1561 gccgctccgc tggtcttccg ctcgaacctc gaccgcggcg aataccaggc ggcggtgcag
     1621 cgcgtccgcg accacatcgc ccgtggcgat atctaccagg ccaacctgac ccgtcgactc
     1681 gaggccgggt tcgacgcgga cccgtgggag ctgtaccgcc gcctccgaac cggcgatccg
     1741 tcgctgttct cggcgttcgt ggacctcggg ccgagccagc tgaccggccg gccccgggcg
     1801 ctgctgtcgg cttcgccgga accgttcctg tccgtcgacg cgggcgggca ggtcaaggcg
     1861 gacccgatca aggggacgcg accgcggggg cgcgacctgg cggaggaccg ggccctcgga
     1921 tgccagctgc tgaccagcgc caaggaccgc gccgagaacg tgatgatcgt cgacgtgctc
     1981 cgcaacgatc tcggccgcgt ctgccggccg gggacggtcc gggtcccgcg cctgtgccgg
     2041 ctcgagcgca cggccacggt ccagcacctc gtgtcgaccg tgacgggctc gctcgccgag
     2101 ggccgcgacg cgttcgacct cctggcggca gcgttcccgg gcgggtcgat caccggcgcc
     2161 cccaagatcc gggcgatgga gatcctcgag ggcctcgagc ccgtcaggcg cgggccgtac
     2221 accggcgcgc tcggctggat cggccccgac ggcgcgatgc agacgagcat cctgatccgg
     2281 acgttcgtcg ccgacgggcg ccggctcacg ctccacgtcg ggggcgggat cacctggaag
     2341 agcgacccgg cggccgaatg ggaggagacc gtcgtgaagg ccaccggacc actcggcgcg
     2401 atcggtggcg tggaggtccg atgaccagga gccattcctt ggggtccggc agcgtgtggg
     2461 tggacggtcg cctgctgccg gcggacgggc ctcacctgtc ggtgttcgat cgcgggttcc
     2521 agctcggtga cggcatcttc gagacgctcc gcgtgcgtgc cagccacccg accgagctcg
     2581 ccgagcacgt ggcgcgactt cgccggtcgg cgatcggcct cgacatcgcc ctgccggacg
     2641 atctcgaggc acagctcgcc cgaggcatcg ccgggctgct ggcggc
//
LOCUS       DATDDI010000021         3310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_458211, whole genome shotgun sequence.
ACCESSION   DATDDI010000021 DATDDI010000000
VERSION     DATDDI010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3310
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458211"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            461..1807
                     /gene="dnaB"
                     /locus_tag="VIU37_00350"
     CDS             461..1807
                     /gene="dnaB"
                     /locus_tag="VIU37_00350"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF004384.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEY6012415.1"
                     /translation="MIDRLPPQSLEAEQSVLGAILIDRDAVIEVAEFLRPADFYRQAN
                     GRIYAAVLDLFERREPIDIVTVAETLERRDELEAVGGRAYLSSLSNETPTAVHVAQYA
                     RIVERKAVLRNLIGAAGRIAGIGYEDPAEIQEAIDRAEAELFAVSQKRVDAGFSPLKS
                     LLHDAYDRLDYLHAHRGEISGVRTGFADLDTLTTGLQKSDLIVVAARPSVGKTSFALN
                     IAEHAAVRERKSVGVFSLEMSKEQLVLRLLSSVANIDSQRLRSGFLEEMDFARIAPAM
                     NALSEAPMYIDDTPNISAMELRTKARRLQAENGLDLVVVDYLQLMQATTTNRDANRVQ
                     EVSEISRGLKALARELSVPVVALSQLSRQPEMRESKEPRLSDLRESGAIEQDADLVMF
                     LWREKERGSDDQEQDGEVVKLKLAKHRNGPTGEIGLWFKKKQTRFVSYAGERYAEA"
     gene            complement(1822..2700)
                     /locus_tag="VIU37_00355"
     CDS             complement(1822..2700)
                     /locus_tag="VIU37_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012416.1"
                     /translation="MRLPVLAFLSVLVVACSAAATTAQPSTVPTASPSPSAGGFGAIE
                     HATGPTDVLLRFEQGGGFVAPAFLATQAPIFTLYGDGTVLFRNPAQDPLPPIGSVVPD
                     RPFRTTRLTEDQIQAVLEDALGPGGLGTARTDYRNDQIADAPTAVFTVNAGGLSKRVS
                     VYALGMDVQGGADAPARAAFQKLAERLQDFDQGGTFSTTEYAPERYRGVLMDGGPGAP
                     DAKPWPWDALKPADFVANADPNAFQLPARVLTIADVEALGIDPYRGGFQGLTLVGPDG
                     KTYLFSLRPLLPDETS"
     gene            2934..3242
                     /locus_tag="VIU37_00360"
     CDS             2934..3242
                     /locus_tag="VIU37_00360"
                     /inference="COORDINATES: protein motif:HMM:NF024843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain containing protein"
                     /protein_id="HEY6012417.1"
                     /translation="MYQDRSLTCRDCAEEFLFSAGEQAFFASKGLTNDPQRCPSCRAI
                     AKRARATDGPREFHAAICGACGGQAVVPFAPRNDRPVYCSSCFDKVRAGTLSSATASA
                     "
BASE COUNT          544 a         1136 c         1144 g          486 t
ORIGIN      
        1 cggaacggcg acatcgtcgt cgcccaggtt gaggagaacg cggtcacgct caagcgcttc
       61 ttcaaggaga aggaccagat ccggctccag ccggccaacc cggcataccc cgcccagttc
      121 tacgacgacg tcaggattca gggcaagctg attggtgtca ttcgacgtct cgactgacgg
      181 aggcccgcca gacggcccag gcgtgcgttg ggcggttccg ccgttcgctc acgcactgct
      241 agtgcgctcg ctctcttgct cgccgcccgc cttcgcctga accatcgggc gggccgtgtg
      301 ccagttcgag agacgtggat atccacttag tcgtccacat cgggcgcaca ggtgggtgaa
      361 gttcgtggaa ggcgagccgg cggcgcatca ccttggttga tcggttcgcc gggcccgcgt
      421 ctgacaatca cgaccccacc gctgatggag tctgccgcgc gtgattgatc gcctgccgcc
      481 acagagtctc gaggccgagc agtcggtgct gggcgccatc ctgatcgatc gcgacgcggt
      541 gatcgaggtc gcggagttcc ttcgaccggc cgacttctac cgccaggcga acgggcggat
      601 ctacgcagcg gtgctggacc tgttcgagcg ccgcgagccg atcgacatcg tcacggtcgc
      661 cgagaccctc gagcgtcgcg atgagctgga agccgtgggc ggccgtgcgt acctgtcgag
      721 cctgtcgaac gagaccccga cggcggtcca cgtcgcccag tacgcgagga tcgtcgagcg
      781 gaaagcggtg ctgcggaacc tgatcggtgc ggcggggcgg atcgcgggga tcggctacga
      841 ggacccggcc gagatccagg aggcgatcga tcgggccgag gcggagctgt tcgccgtcag
      901 ccagaagcgt gtagacgccg ggttcagccc gctcaagtcg ctgctccacg acgcctacga
      961 ccggctcgac tatctccacg cccaccgcgg cgagatcagc ggcgtccgga ccggcttcgc
     1021 cgacctcgac acgctcacca ccggcctcca gaagagcgac ctgatcgtcg tcgccgcgcg
     1081 gccgtccgtc ggcaagacga gcttcgccct caacattgcc gagcacgccg ccgtccgcga
     1141 acgaaagagc gtcggcgtgt tcagcctcga gatgagcaag gaacagctcg tcctgcgcct
     1201 gctgtcgagc gtcgccaaca tcgattcgca gcgcctccgc agcggcttcc tcgaggagat
     1261 ggacttcgcc cggatcgccc cggcgatgaa cgccctgtcc gaggcgccga tgtacatcga
     1321 cgacacgccg aacatctcgg ccatggagct gcggaccaag gcgcgccgcc tccaggccga
     1381 gaacggcctc gatctcgtgg tcgtggacta cctccagctc atgcaggcga ccacgaccaa
     1441 ccgcgacgcc aaccgcgttc aggaagtgtc ggagatctcg agagggctca aggcgctcgc
     1501 gcgcgagctg tcggtgccgg tggtcgcgct gtcgcagctg tcacggcagc cggagatgcg
     1561 cgaatcgaag gaaccgcgcc tgtccgacct gcgcgaatcg ggtgccatcg agcaggacgc
     1621 ggacctggtc atgttcctgt ggcgtgagaa ggagcgcggc tcggacgacc aggagcagga
     1681 cggcgaggtc gtgaagctca agctcgccaa gcaccgcaac ggaccgaccg gcgagatcgg
     1741 cctctggttc aagaagaagc agacgaggtt tgtctcgtac gcgggcgagc gctacgcgga
     1801 ggcgtagctg cgccggcggg cctagctcgt ctcgtcgggg aggagcggcc ggagggagaa
     1861 caggtacgtc ttcccgtccg gcccgacgag cgtgagcccc tggaagccac cgcggtatgg
     1921 atcgatgccc agggcttcga cgtcggcgat cgtgaggaca cgggccggca actggaacgc
     1981 gttggggtcc gcgttggcca cgaagtccgc cggcttcagg gcgtcccatg gccagggctt
     2041 cgcgtccggc gcgccgggcc cgccgtccat gaggacgccc cgataccgtt cgggcgcgta
     2101 ctcggtcgtc gagaacgtgc caccctggtc gaagtcctgg agtcgctcgg cgagcttctg
     2161 gaacgcggcg cgggccggag cgtcggcccc gccctggacg tccatgccga gcgcgtagac
     2221 cgagacgcgc ttgctcaggc cgccggcgtt gaccgtgaag accgccgtcg gcgcgtccgc
     2281 gatctggtca tttcggtagt cggtccgggc cgtcccgagg ccgcctggcc cgagcgcgtc
     2341 ctcgagcacc gcctggatct ggtcctcggt cagccgcgtg gtgcggaacg gccggtccgg
     2401 aacgaccgac ccgatcggtg gcaacggatc ctgggcgggg ttcctgaaga gcaccgtccc
     2461 atcgccgtag agcgtgaaga tcggtgcctg cgtggcgagg aacgccggcg ccacgaagcc
     2521 gccgccctgc tcgaaccgaa gcagcacgtc ggtcggaccg gtcgcgtgct cgatggcacc
     2581 gaacccgccc gccgacgggc tcggcgaggc agtcggcacg gtcgatggct gagccgtggt
     2641 ggccgctgca ctgcaggcca cgacgaggac ggacaggaac gcgaggacgg gaagtcgcat
     2701 ggtcgaaggc atgggacccg gacgccgtgc cttgtcgacc ggttcccccc ggcaacgaac
     2761 cccttcggag gtcttgacgg cgcgcgtatc ttctcggcta tgagttccgg gccccagccc
     2821 gggccgaccg ggcgcgcacc ccaatcaggc gcgcccgacg ccgacccgca tccagctcga
     2881 gctgcggggc tcaaccgtca tgggcgtccc gagccgagga gggtctggag agcgtgtacc
     2941 aggaccgtag cctgacctgc cgcgattgcg ccgaggagtt cctcttctcg gccggcgagc
     3001 aggcgttctt cgcctcaaaa gggttgacca acgaccccca gcgctgccca tcgtgccgcg
     3061 ccatcgccaa gcgggcacgc gccaccgacg gcccgcgcga attccacgcc gccatctgcg
     3121 gcgcgtgcgg cggccaggcc gtcgtaccat tcgcgccgcg gaacgaccgc cccgtctact
     3181 gcagctcgtg cttcgacaag gtgcgagcgg ggacgttgtc gagcgccacg gccagcgcct
     3241 gaacacgccc cggcgacggg ttaccttcga atccacctga gcagccacga ggccggtccg
     3301 gcaatggacc
//
LOCUS       DATDDI010000022         1850 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_250123, whole genome shotgun sequence.
ACCESSION   DATDDI010000022 DATDDI010000000
VERSION     DATDDI010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250123"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            326..1201
                     /locus_tag="VIU37_00365"
     CDS             326..1201
                     /locus_tag="VIU37_00365"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY6012418.1"
                     /translation="MIPGQFDYVRPADLTETLRILKEREGEAKLLSGGYSLLPLIKLR
                     LAQPSLLVDLRDVPGLDGITETDDHLAIGGRATHRRIHEAAVVRDRYPLLHDVTATIG
                     DPQVRNWGTIGGSVAHADPASDWPAVLLATSATVVCQGGAGERLIAAREFFLDTFTTA
                     IEPTEVLTEIRIPRRPRGAGGAYEKLERKVGDFATVAVAAVVRLDPAGRIASAGIGLT
                     GVAETPFAATDAEAILAGASPSDEVFRRAGAAAAAQSRPAGDVRGPVEYKRAMVAEFT
                     LRALRRATERALANA"
     gene            1214..1717
                     /locus_tag="VIU37_00370"
     CDS             1214..1717
                     /locus_tag="VIU37_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY6012419.1"
                     /translation="MTTQHITVTVNGATHEADVEPRLLLVHFLRDSLGLTGTHVGCDT
                     SNCGACTVHIDGQSAKSCTRLAVQVDGCQVKTIEGMADEPHLHPLQQAFWDQHGLQCG
                     FCTPGMIMQSAWLLEQNPDPTDDEVREGIAGNLCRCTGYVNIVKAVQQAAGELRAAEA
                     APSGTAA"
BASE COUNT          283 a          678 c          650 g          239 t
ORIGIN      
        1 gccgcgctcg acggcctggc cgtcgcggac ggcgagggct ggacgatccg cggtcgcggg
       61 ccgatcgaga cgggcgtggt gacgtggccg ccgtccgcgc ctgatcgatc gccggtccgc
      121 tgacccgacc agcgggacac gttgacgtgc gaacgaactg aggcagatac tccgccgcag
      181 cgcgttccca ctacccgatc ggacccgcgg tcgacgcctc cctcgacgtg actgccggcc
      241 cgcgatcgtc gccattgttc gaggcccgtc cgggccggac gggccgacat cgtcccgctg
      301 gtgcggggag gagggtctga gcgcgatgat tccaggccaa ttcgactacg tgcgcccggc
      361 cgacctgacc gagacgctcc gcatcctcaa ggagcgggaa ggcgaggcca agctgctgtc
      421 gggcggctac agcctgctgc cgctgatcaa gctccggctg gcgcaaccgt cgctcctggt
      481 cgacctgcgc gatgtccctg gtctcgacgg catcaccgag accgacgacc acctggccat
      541 cggcgggcgg gccacccacc gccggatcca cgaggcggcg gtcgtccgcg accggtaccc
      601 gctgctccac gacgtgaccg ccaccatcgg cgacccgcag gtccgcaact ggggcacgat
      661 cggtggctcc gtggcccacg ccgacccagc ctcggactgg ccggcggtcc tgctggcgac
      721 cagcgcgacc gttgtctgcc agggcggggc gggcgagcgg ctgatcgccg cgcgcgagtt
      781 cttcctggat accttcacca cggcgatcga gccgacggag gtcctgaccg agatccggat
      841 cccgcggcgg ccacgcggag ccggtggtgc gtacgagaag ctcgagcgca aggtcggcga
      901 cttcgcgacc gtcgcggtcg cggcggtcgt ccgcctcgac cccgccggcc ggatcgcgtc
      961 cgccgggatc gggctcacgg gcgtggccga gacgccgttc gccgctacgg acgcggaggc
     1021 gatcctggcc ggcgcgtcac cgtcggacga ggtcttccgg cgggccggcg ccgccgccgc
     1081 cgcgcagagc cgaccggccg gcgacgtgcg cggtccggtc gagtacaagc gcgcgatggt
     1141 cgccgagttc accctcaggg cgctccggcg ggccaccgaa cgcgcgctcg cgaacgcgta
     1201 ggaggcgtcc ccgatgacca cccagcacat cacggtcacc gtcaacggcg cgacgcacga
     1261 agctgacgtg gagccccgcc tgctgctcgt ccacttcctg cgcgattcgc tcggcctgac
     1321 cggcacgcac gtcggctgcg acaccagcaa ctgcggcgcg tgcacggtcc acatcgacgg
     1381 ccagagtgcc aagtcgtgca cccggctcgc ggtccaggtg gacggctgcc aggtcaagac
     1441 gatcgagggc atggccgacg agccccatct gcatccactc cagcaggcgt tctgggatca
     1501 gcatggactc caatgcgggt tctgcacccc gggcatgatc atgcagtcgg cctggctcct
     1561 ggagcagaac cccgacccca cagacgacga ggtgcgcgag gggatcgcgg gcaacctctg
     1621 ccgctgcacg ggctacgtga acatcgtcaa ggccgtccag caggcagccg gcgagcttcg
     1681 tgccgccgag gccgccccca gcggcacggc cgcctgagcc ccgggagacg acgatgacgc
     1741 ttgaggcgca ggcacccacg acgacgcccg aggtctcggg catgggtcat tcgatgaagc
     1801 ggaaggagga cccccgcttc atccgcggcc agggcgagta catcgaggac
//
LOCUS       DATDDI010000023         1630 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_499843, whole genome shotgun sequence.
ACCESSION   DATDDI010000023 DATDDI010000000
VERSION     DATDDI010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499843"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..864)
                     /gene="ispH"
                     /locus_tag="VIU37_00375"
     CDS             complement(<1..864)
                     /gene="ispH"
                     /locus_tag="VIU37_00375"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF014456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEY6012420.1"
                     /translation="MVQDVRIAKRTGFCYGVREAIDKAKEASSAGKLTHTLGQVVHNE
                     GVVRDLQDLGIQTVETLDDVDRGAAVVIRAHGVRPDVMSRAEDRGLEIIDGTCTWVIQ
                     EQKELRKLVEDGYTIVLLGTPKHPEVVGLLGFAPDAIVVDDESEWEAAIPPRKRMALL
                     SQSTQPPWKFEKLAAFMVGRAHELKIVNTVCPVTIRRQQDTLDTAGEVDLMVVVGGRS
                     SANTKELTRLCEIAGTDAIQIESVRDLTDASLFGTAAVVGVTGGTSTPIEDLRDVAEW
                     ILANAGTPEASA"
     gene            complement(878..>1630)
                     /locus_tag="VIU37_00380"
     CDS             complement(878..>1630)
                     /locus_tag="VIU37_00380"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY6012421.1"
                     /translation="GPAGRTPRGAAMSEAELIDSSITPLISVVAFAGRIFAQAMSRVS
                     IAGAIDEIPRDGPLIIAANHASNFDAPVLGAWLIPKLGRRIHWLGKRELFAWPIVGWV
                     AANGGVHPVDRDSADVEAFRLASRILEGGHVLFVFPEGTRSPDGALQEARDGVALLAL
                     RSGAPIVPIGIGGSNRVWPKGQRLPHPGGHVVVRVGRPFRPADELPEGTDRKAAKALV
                     TRMIMERIAALLPVRQRGVYGASEGAAADPMP"
BASE COUNT          219 a          578 c          584 g          249 t
ORIGIN      
        1 cgcgctcgcc tcgggcgtgc cggcgttggc gaggatccat tcggcgacgt cgcgcaggtc
       61 ctcgatcggg gtggaggtgc cgccggtcac accgaccacg gccgcggtcc cgaacaggct
      121 cgcgtcggtc aggtcgcgaa cgctctcgat ctggatcgcg tcggtcccgg cgatctcgca
      181 cagccgggtc agctccttgg tgttcgcgct cgaccggccg ccgacgacga ccatcaggtc
      241 cacctcgccg gcggtatcga gggtgtcctg ctggcggcgg atcgtgaccg ggcagacggt
      301 gttgacgatc ttgagctcgt gcgctcgccc gaccatgaag gccgcgagct tctcgaactt
      361 ccagggcggc tgcgtcgact gcgagagcag ggccatccgc ttgcgcggcg ggatcgcggc
      421 ctcccattcg gattcgtcgt ccacgacgat ggcgtccggg gcgaagccga ggaggccgac
      481 cacctcgggg tgcttggggg tgcccagcag gacgatcgtg tagccgtcct ccaccagctt
      541 gcggagctcc ttctgctcct ggatcaccca ggtgcaggtg ccgtcgatga tctcgaggcc
      601 gcggtcttcg gcgcgcgaca tgacgtcggg gcggacgccg tgcgcgcgga tgacgaccgc
      661 cgcgccgcgg tcgacgtcgt cgagcgtctc gaccgtctgg atccccaggt cctggaggtc
      721 gcggacgacg ccctcgttgt ggacgacctg accgagggta tgggtcagct tgccggcgct
      781 cgaggcctcc ttggccttgt cgatcgcttc ccgaacgccg taacagaagc ccgtccgctt
      841 ggcgattcgg acgtcctgga ccatacccac gacccgatta tggcatgggg tccgctgcag
      901 ccccctccga ggcaccgtag acgccgcgct ggcggacggg caggagcgcc gcgatccgct
      961 ccatgatcat cctcgtgacg agggccttgg ccgccttccg atcggtcccc tccggcagct
     1021 cgtcggcggg gcggaacggc cgcccgacgc ggacgacgac gtggccaccc gggtgtggca
     1081 ggcgctggcc cttcggccag acacggttcg agccgccgat cccgatcggg acgatcggcg
     1141 cgccgctccg cagggcgagc agcgcgaccc cgtcgcgggc ctcctgaagc gcgccgtcgg
     1201 ggctgcgcgt gccctccggg aagacgaaca ggacgtggcc gccctcgagg atccggctcg
     1261 ccagccggaa ggcctcgacg tccgcgctgt ctcgatcgac cgggtggacg ccgccgttgg
     1321 ccgcgaccca gccgacgatc ggccaggcga acagctcccg cttgcccagc cagtggattc
     1381 gccgcccgag cttcgggatc agccaggcgc cgaggaccgg cgcgtcgaag ttggaggcat
     1441 ggttggcggc gatgatcaag ggtccgtcgc gcgggatctc gtcgatcgcg cccgcgatgg
     1501 acacccggct catggcctgg gcgaagatgc gcccggcgaa cgccacgacc gagatcagcg
     1561 gcgtgatcga gctgtcgatc agctccgcct cgctcatcgc cgcgcctcgc ggggtgcggc
     1621 cggccgggcc
//
LOCUS       DATDDI010000024         2988 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_395786, whole genome shotgun sequence.
ACCESSION   DATDDI010000024 DATDDI010000000
VERSION     DATDDI010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395786"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..920)
                     /locus_tag="VIU37_00385"
     CDS             complement(<1..920)
                     /locus_tag="VIU37_00385"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEY6012422.1"
                     /translation="MKQTVIPMGPQHPVLPEPLVLDLVLEDEKVVDAIPMIGYIHRGL
                     EAMVERVEYTEMGYVIERICGICSFMHGMAYCLALEDIMAVEVPERARWLRLVWAELS
                     RVQSHLLWLGLGADAFGFENLLMQCWRMREEVLDVFEQTTGGRIIHSVNRIGGVRRDI
                     TDSELTAIVERLDRLAIGFEATARVFGTDPSIRHRLEGVGVLSGDDARKLGAVGPMAR
                     ASGIALDTRLLGEHLYDRLEFEPIIETGGDCLARVLVRVREVQQSIGLIHQLVDRMPK
                     GDDLPIDTKVRGMPTGETFIRLEQPRGEVA"
     gene            complement(917..1330)
                     /locus_tag="VIU37_00390"
     CDS             complement(917..1330)
                     /locus_tag="VIU37_00390"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEY6012423.1"
                     /translation="MDGGAFLDRVAAYARDGWRLVVINATSLLPAEGTEDGAFDITWS
                     FAREREFEHLRERVLPGEDVPSISAHYPASFLYENELRELFGISITGIGVDFGGQMYR
                     TGERVPFAPGAIRARLEAAGRLDAAPRPGHGPQQP"
     gene            complement(1330..1755)
                     /locus_tag="VIU37_00395"
     CDS             complement(1330..1755)
                     /locus_tag="VIU37_00395"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990204 - oxidoreductase complex
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HEY6012424.1"
                     /translation="MSFFSRSPWILHYDGSSCNGCDIEVLACLTPLYDVERFGIINTG
                     NPKHADILLVTGSVNERNVDIIENLYRQMPDPKVVVAVGACACSGGIFARAYNVQGGI
                     DKVVPVDVYVPGCAARPESIIDGVVQGIAALEQKRAKVA"
     gene            complement(1761..2615)
                     /locus_tag="VIU37_00400"
     CDS             complement(1761..2615)
                     /locus_tag="VIU37_00400"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit H"
                     /protein_id="HEY6012425.1"
                     /translation="MNPILLAPLYLLLAPLFGGLLTGVDRVLSARMQGRVGPPMLQPF
                     YDLGKLLQKDVRPVNPIAEPLLLGHVLFMALSGAMVVGGVDLLFTAFVFALAALLLVL
                     AAGSVNSPYSFTGAERELIVLLASEPFFILMLAAVCKVTGESTFAGVLASPELVAPLL
                     PGIMLAFLLVATIKLRKSPFDISTSHHPHQELVRGLTTDMSGRLIGWVELAHWYESAL
                     LALFVLLLVNWSPPLALVAFLVAYFLEILVDNSTSRAKWQLVLQSTWAVTLVLAGGNV
                     LALFLLRS"
     gene            complement(2612..>2988)
                     /locus_tag="VIU37_00405"
     CDS             complement(2612..>2988)
                     /locus_tag="VIU37_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012426.1"
                     /translation="SLGLLSESIVGPYARELFPGGTGALLHLDPAVVSFMVLAVLFLP
                     ALALWSWRKSAYDVGDFYASGRTTDGEHAIAAALGGSRAVTLRNYYLVGVVNGDAVFR
                     AGIVAGGALLTGMIVAGVVLRA"
BASE COUNT          524 a         1005 c         1058 g          401 t
ORIGIN      
        1 taggcgacct cgccgcgcgg ctgctccagc cggatgaacg tctcgcccgt cggcatgccg
       61 cggaccttgg tgtcgatcgg gaggtcgtcg cccttcggca tcctgtccac cagctggtgg
      121 atcaatccga tggactgctg cacctcgcgc acgcgcacga gcacgcgggc gaggcagtcg
      181 ccgccagtct cgatgatcgg ctcgaactcg agacggtcgt acaggtgctc gccgagcagc
      241 cgggtatcga gcgcgatccc ggacgcgcgc gccatggggc ccacggcacc cagcttgcgg
      301 gcgtcgtcgc cgctgagcac gccgaccccc tccaggcgat ggcggatgga cggatccgtg
      361 ccgaagaccc tggcggtcgc ctcgaacccg atggccagcc gatcgagccg ctcgacgatc
      421 gccgtcagct ccgagtcggt gatgtcccgg cgcacgccgc cgatgcggtt gaccgagtgg
      481 atgatccggc cgccggtcgt ctgctcgaac acgtcgagga cttcctcgcg catccgccag
      541 cactgcatga gcaggttctc gaacccgaag gcatccgcgc cgaggccgag ccacaggagg
      601 tggctctgga cccgggacag ctcggcccag acgagccgca gccagcgcgc ccgttcgggg
      661 acttccaccg ccatgatgtc ctcgagggcg aggcaatacg ccatgccgtg catgaagctg
      721 cagatgccgc agatgcgctc gatgacgtag cccatctccg tgtattcgac gcgctccacc
      781 atcgcctcga ggccgcggtg gatgtagccg atcatcggga tcgcgtcgac gaccttctcg
      841 tcctcgagca cgagatccag gacgagcggc tcgggcagca ccgggtgctg cggacccatc
      901 gggatgacgg tctgcttcat ggctgttgcg gtccatgccc gggccgcgga gcggcgtcga
      961 gccgtccggc cgcctccagc cgggcgcgaa tggcgccggg ggcgaatggg acccgttcgc
     1021 cggtccggta catctgcccg ccgaagtcga cgccgatccc ggtgatcgag atcccgaaca
     1081 gctcgcggag ctcgttctcg tacaggaagg acgccgggta gtgggccgag atgctcggga
     1141 cgtcctcgcc cggcaggacc cgctcgcgca ggtgctcgaa ctcgcgctcc cgcgcgaacg
     1201 accaggtgat gtcgaacgcc ccgtcctccg tgccctcggc ggggagcagc gaggtcgcgt
     1261 tgatcaccac cagccgccac ccgtcacggg cgtaggccgc gacccgatcc aggaatgcgc
     1321 cgccgtccat caggccacct tcgcgcgctt ctgctcgagc gcggcgatgc cctgcacgac
     1381 gccgtcgatg atgctttccg ggcgagccgc gcaacccggg acatagacgt ccacgggcac
     1441 gaccttgtcg atcccgccct ggacgttgta ggcccgggcg aagatgccac cggagcaggc
     1501 gcaggcgccg accgcgacca cgaccttcgg gtcgggcatc tggcgataga ggttctcgat
     1561 gatgtcgacg ttgcgttcgt tgacgctgcc ggtgacgagc aggatgtcgg cgtgcttggg
     1621 gttgccggtg ttgatgatcc cgaaccgctc cacgtcgtag agcggggtga ggcaggccag
     1681 cacctcgatg tcgcagccgt tgcagctcga gccgtcgtag tggaggatcc acggcgaccg
     1741 ggagaagaag gacatcgcgc tcaactcctc agcaggaaca gggccaggac gttgccgccg
     1801 gcgagcacga gcgtcaccgc ccaggtcgac tgcaggacga gctgccactt ggcccgggag
     1861 gtcgagttgt cgacgaggat ctcgaggaag taggcgacca ggaaggcgac cagcgcgagc
     1921 ggcgggctcc agttgacgag caggagcacg aacagcgcca gcagcgccga ctcgtaccag
     1981 tgggcgagct ccacccagcc gatcagccgg cccgacatgt cggtggtcaa gccgcggacg
     2041 agctcctggt ggggatggtg cgaggtcgag atgtcgaacg gcgacttgcg cagcttgatc
     2101 gtggcgacga gcaggaaggc cagcatgatc ccgggcagca gcggtgcgac gagctcgggc
     2161 gacgccagga cgccggcaaa cgtgctctcg ccggtgacct tgcagaccgc ggccagcatg
     2221 aggatgaaga acggctcgga cgcgagcagc acgatcagct cgcgctcggc gccggtgaag
     2281 ctgtacggcg aattgacgga accggcggcg agcacgagga ggagcgccgc cagtgcgaag
     2341 acgaacgcgg tgaacaggag gtcgacgccg ccgacgacca tcgccccgga cagcgccatg
     2401 aacaagacgt gccccaggag cagcggctcg gcgatggggt tgaccggacg gacgtccttc
     2461 tggaggagct tgccgaggtc gtagaacggc tggagcatgg gcgggccgac ccggccctgc
     2521 atccgagcac tcaggacgcg atcgacgccc gtcagcagcc cgccgaacag cggcgccagg
     2581 aggaggtaca gcggagcgag caggatcggg ttcatgcgcg cagcaccaca cccgcgacga
     2641 tcatcccggt cagcagggcg ccgccggcga cgatccccgc ccggaacacg gcgtcgccgt
     2701 tgaccacgcc gacgaggtag tagttgcgga gggtcacggc ccgactgccg ccgagggccg
     2761 cggcgatcgc gtgctcgccg tccgtggttc gcccgctggc atagaagtcg ccgacgtcgt
     2821 aggccgactt gcgccacgac cacagggcga gggcggggag gaacaggacc gcgaggacca
     2881 tgaacgacac gaccgccgga tcgagatgca gcagcgcacc ggttccgcct gggaagagct
     2941 cacgcgcgta cggcccgacg atcgactccg acagcaggcc gagcgagg
//
LOCUS       DATDDI010000025         1769 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_520616, whole genome shotgun sequence.
ACCESSION   DATDDI010000025 DATDDI010000000
VERSION     DATDDI010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520616"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..1052)
                     /locus_tag="VIU37_00410"
     CDS             complement(75..1052)
                     /locus_tag="VIU37_00410"
                     /inference="COORDINATES: protein motif:HMM:NF012412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEY6012427.1"
                     /translation="MQTGLRGRDLISLQEWTTEEVETILEVAARLKMDRALGRPHKYL
                     EDKVLAMLFFFSSTRTRASFEAGMAQLGGHAQFIESRTTQISHGDTAREIGEILGRYN
                     DGIAIRNVDWGIGNGYMRDVAAASRVPVLNMQCDLFHPHQILADLLTMREKKGDLRGR
                     TLTVSWAYAASYQKPMSVPIDLTMAGTRFGMNVRLVHPPEYRLVPEFVDQAAENAKLS
                     GGSLELMDDFDAGFRDSDIVYAKSWGPLLVAKNDEDGAAIGAKYTDWITDERRMALAA
                     PDSIFMHPLPADRNVEVADAVIDGPHSVVYDEAENRLHAQKAVMALTMS"
     gene            complement(1096..>1769)
                     /locus_tag="VIU37_00415"
     CDS             complement(1096..>1769)
                     /locus_tag="VIU37_00415"
                     /inference="COORDINATES: protein motif:HMM:NF012412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012428.1"
                     /translation="DTFHMLEYYADVIAIRHFQQGAPAEAAKWSSVPIINCGDGWGEH
                     PTQVLTDLYTTLHEKGTLDGLTWLLVGDMRMRTMHSILYALSQFDAKAIVVGPPDMSL
                     LPEFKAEIDELNVDYEEAADVRDVIDQADVIYMEPVVQADYTASRVERGDQVGLTPAE
                     YCVTRELLRDKAKRSSIILHSLPRMDELLADVDATRHQRYWAEAFNGVALKMGMLALI
                     LGAAE"
BASE COUNT          256 a          567 c          630 g          316 t
ORIGIN      
        1 ctggtccggc accgtcatgt gcccggggtc gcggatgagc gagttgccgc cgatcgcgac
       61 gacgatcgtc ttgctcatga catcgtgagg gccatgacgg ccttctgggc gtggagccgg
      121 ttctccgcct cgtcgtagac caccgagtgc ggtccgtcga tgacagcatc ggcgacctcg
      181 acgttccgat ccgcggggag cgggtgcatg aagatcgaat cgggggcggc cagcgccatc
      241 cggcgctcgt cggtgatcca gtcggtgtac ttcgcgccga tcgcggcgcc gtcctcgtcg
      301 ttcttcgcga cgaggagcgg gccccagctc ttggcgtaga cgatgtcgga gtccctgaag
      361 ccggcatcga agtcgtccat cagctcgaga ctgccgccgg acagcttggc gttctcggcg
      421 gcctggtcga cgaactcggg gacgagccgg tactccggcg gatggaccag ccggacgttc
      481 atcccgaacc gggtcccggc catggtcagg tcgatcggaa cgctcatcgg cttctggtag
      541 ctcgccgcgt acgcccagct gacggtgagg gtccggccac ggaggtcgcc cttcttctca
      601 cgcatggtca gcaggtcggc gaggatctgg tgcgggtgga acaggtcgca ctgcatgttc
      661 aggacgggca cgcggctggc ggcggcgacg tcgcgcatgt agccgttgcc gatgccccag
      721 tcgacgttgc ggatcgcgat cccgtcgttg tagcgaccga ggatctcgcc gatctcgcgc
      781 gccgtgtcgc cgtgcgagat ctgggtcgtc cgcgactcga tgaactgggc gtgaccgccc
      841 agctgcgcca tgccggcctc gaacgacgcg cgggtgcgcg tgctcgagaa gaagaacagc
      901 atggcgagga ccttgtcctc gaggtacttg tgggggcgac ccagggcgcg gtccatcttc
      961 aggcgggccg ccacctcgag gatcgtctcg acctcctcgg tcgtccattc ctggagcgag
     1021 atgaggtcac ggccgcgaag gcccgtctgc atggcagtct ccttgggttt ggagggttcg
     1081 aggggtcccg aggccctact cggccgcccc gaggatcagc gcgagcatgc ccatcttgag
     1141 cgcgacgccg ttgaaggcct ccgcccagta gcgctggtgg cgcgtggcgt cgacgtcggc
     1201 cagcagctcg tccatgcgcg gcagcgagtg gaggatgatc gagctgcgct tggccttgtc
     1261 ccggagcagc tcgcgggtga cgcagtactc ggccggcgtg aggccgacct ggtcgccgcg
     1321 ctcgacgcgc gaggccgtgt agtcggcctg gacgaccggc tccatgtaga tgacgtcggc
     1381 ctggtcgatg acgtcgcgga cgtccgcggc ttcctcgtag tcgacgttga gctcgtcgat
     1441 ctccgccttg aactcgggca gcaggctcat gtccggcggg cccacgacga tcgccttggc
     1501 gtcgaactgg gacagcgcgt acaggatcga atgcatcgtc cgcatccgca tgtcgccgac
     1561 gaggagccag gtcagcccgt cgagggtgcc cttctcgtgg agcgtcgtgt acaggtcggt
     1621 caggacctga gtcgggtgct cgccccagcc gtcgccacag ttgatgatcg gcacggacga
     1681 ccacttggcc gcctccgccg gggcgccctg ctggaagtgg cggatggcga tgacgtccgc
     1741 gtagtactcc agcatgtgga aggtgtcct
//
LOCUS       DATDDI010000026         3603 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_395810, whole genome shotgun sequence.
ACCESSION   DATDDI010000026 DATDDI010000000
VERSION     DATDDI010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395810"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..507
                     /locus_tag="VIU37_00420"
     CDS             115..507
                     /locus_tag="VIU37_00420"
                     /inference="COORDINATES: protein motif:HMM:NF017922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HEY6012429.1"
                     /translation="MNPATAPGTITPASIHADRGAGRLEIGWADGHATVYDTTSLRWL
                     CPCAYCRGEAGMPGWLDSAPTLTDEQTRLVDVALVGGYAIAPTWGDGHHTGYYTYALL
                     RDRCPCPECSERRSGRPPTPGRSHEEHA"
     gene            504..851
                     /locus_tag="VIU37_00425"
     CDS             504..851
                     /locus_tag="VIU37_00425"
                     /inference="COORDINATES: protein motif:HMM:NF014019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HEY6012430.1"
                     /translation="MIVVTTPYVSGHRVVETKGMVFGLVVRSRGLGGNIMASLRSLGG
                     GEIHEYTSMLEDTRRQALDRLVQNATLAGANAILSMRFDSSELANTMSEIVAYGTAVV
                     VEADASAAPVTAE"
     gene            855..1217
                     /locus_tag="VIU37_00430"
     CDS             855..1217
                     /locus_tag="VIU37_00430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012431.1"
                     /translation="MRGSGGVGRGLVVVVGGVMVFAGLAAVSEGGADAGITGLWLVAI
                     GMVLIVVAILERFRYRSETADRSGLPIGPGGGEPTSNPLEGRFRRTSEVFVDPTSDRR
                     MRVWLDEETGERRYRAED"
     gene            1419..3599
                     /locus_tag="VIU37_00435"
     CDS             1419..3599
                     /locus_tag="VIU37_00435"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: protein motif:HMM:NF003922.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEY6012432.1"
                     /translation="MAAIESGAPSTRAAVRTRARRAARSSAPLPYLNRELSWLDFNAR
                     VLHEAADERNPLLERVKFLAIFAGNLDEFFQVRVAGLRQQVEAGKAARSPDGRTAEEQ
                     LTAARERVLGLIADHSGVYVEVRRALRAEGIDLVDYDAIPEHHDTLRQRFLDEIFPVL
                     TPLAVDPGHPFPYISTLSLSIAVGLRDPDSDERRFARVKVPQILPRLIEVEPSRFVLI
                     DQVIEANLDTLFSGMIVEEYHLFRVTRNADLALEEDEADDLLLAIEEELRRRRFGEAV
                     RLEVERSMPPATRGLLLRGLDLDEADCYEVSGPLDLTGLWEIADLDRPELKPPSWTPV
                     TPPRLLPPDDDEPADVFAAIRAGDILVHHPYESFTASVERFITQAADDPDVLTIKQTL
                     YRTSGDSPLVQSLIRAAERGKQVVVLVEIKARFDEEANIIWARKLERAGAHVVYGLVG
                     LKTHSKTSLVVRREGSGLRRYVHIGTGNYNHKTARLYVDLGLLTCRPEIGADVTDLFN
                     VLTGLSRQRTFRRLLVAPHSLRSRFLDLVEREIGFAAAGKPARIVLKLNAIVDVAVIE
                     ALYRASNAGVEVDLIVRGACSLQPGLRGISERIRVRSIIGEFLEHSRIWSFDNGGDRE
                     WYIGSADLMDRNLDRRVEAVTPVEDPEAQSRLATIIDVMLADDRRSWQLQPDARWLRT
                     EVLLGRAGTVDTFEALKEEALDRAQVAVVPHRPGAGTGSLDPRA"
BASE COUNT          532 a         1305 c         1248 g          518 t
ORIGIN      
        1 ggaggctcac gctggcgagg atagcctccg cgaagggttg cgccccctca ccgatggtcc
       61 gggtgggtcg cgacggccaa acctcgcggc cgcgcaacgg cgtagcatcg acgcgtgaac
      121 cccgcgaccg ctcccggcac gatcacgccc gcctcgatcc acgcggatcg cggcgcggga
      181 cgactcgaga tcggctgggc cgacggccac gcgaccgtct acgacacgac gagcctgcgc
      241 tggctctgcc cctgcgccta ctgccggggc gaggccggca tgccgggctg gctcgacagc
      301 gcgccgacgc tcaccgatga acagacgcga ctggtcgacg tcgcgctcgt cggcggctat
      361 gccatcgccc cgacctgggg cgacggccac cacaccggct actacacgta cgccctgctt
      421 cgcgaccgct gtccctgccc ggagtgctcg gagcgacgca gtggccggcc accaaccccc
      481 gggcgaagcc atgaggagca cgcatgatcg tcgtcacaac cccgtacgtc tccggccatc
      541 gcgtcgtcga gaccaagggc atggtcttcg gtctcgtcgt ccgcagccgc ggtctcggcg
      601 gcaacatcat ggccagcctt cgatcgctcg gcggcggcga gatccacgag tatacgagca
      661 tgctcgagga cacccgccgg caggcgctag accggctggt ccagaacgcc acgctcgcgg
      721 gcgccaacgc gatcctgtcg atgcgcttcg acagctcgga gctggccaac acgatgagtg
      781 agatcgtcgc ctacggcacc gccgtcgtcg tcgaggctga cgcgtcggcc gctccggtca
      841 ccgccgagta agcgatgcgc ggctcgggcg gcgtcggtcg cgggctggtc gtcgtcgtcg
      901 gcggggtgat ggtcttcgcc ggcctggcgg ccgtgtccga gggcggcgcc gatgccggca
      961 tcaccggcct gtggctggtc gcgatcggga tggtcctgat cgtcgtggcg atcctggaac
     1021 ggttccgcta ccggtccgag acggccgacc ggtccggcct gccgatcggt cccggcggcg
     1081 gcgaacccac ctccaacccg ctcgagggcc gcttccggcg cacgagcgag gtgttcgtgg
     1141 acccgaccag cgaccggcgc atgcgcgtct ggctcgacga ggaaaccggc gaacgccgct
     1201 accgggccga ggactgacgg acaggaaggc aattgacggc ccgccagggc ggtgcaggcg
     1261 aaggcggagc cgagcacgat cgcgagcgca ctggaagtgc gtgagcgaac gcgcggaggc
     1321 gacaacgcac gcatgcgccg tcccggcggg ccgtcgtgct attctcgccg gccgggtcgc
     1381 ttgactgcga ccacgctgca ggagcccgat acccgccgat ggccgccatc gaatccggag
     1441 ctccctcgac tcgcgctgcg gtgcgaacgc gcgcccggcg ggcggcgcgc agcagcgccc
     1501 cgctgccgta cctcaaccgt gagctctcct ggctggactt caacgcccgg gtgctccacg
     1561 aggcggccga cgagcgcaac cccctgctcg aacgagtcaa gttcctggcg atcttcgccg
     1621 gcaatctcga cgagttcttc caggtgcggg tggccgggct tcgccagcag gtcgaggccg
     1681 gcaaggccgc ccgctcaccc gacggccgga ccgccgagga gcagctgacg gcggcgcgcg
     1741 agcgcgtcct ggggctgatc gccgatcact ccggggtcta cgtcgaggtt cgccgtgcgc
     1801 ttcgcgccga aggcatcgac ctggtcgact acgacgcgat cccggagcac cacgacacgc
     1861 tccgccagcg gttcctcgac gagatcttcc cggtcctgac gccgctggcc gtcgatccgg
     1921 gccatccatt cccgtacatc tcgacgctca gcctctcgat cgcggtcggg ctgcgcgacc
     1981 cggacagcga cgagcgccgg ttcgcccggg tcaaggtccc ccagatcctg cctcgcctga
     2041 tcgaggtcga gccgtcccgc ttcgtgctga tcgaccaggt gatcgaggcc aacctggaca
     2101 cgctcttcag cgggatgatc gtcgaggagt accacctgtt ccgggtcacc cggaacgccg
     2161 acctggccct cgaggaggac gaggcggacg acctgctcct ggcgatcgag gaggagctcc
     2221 ggcgccggcg gttcggcgag gcggtccgcc tcgaggtgga gcgctccatg ccgccggcga
     2281 cgcgcgggct gctcctgcgc ggcctcgatc tcgacgaggc cgactgctac gaggtcagcg
     2341 gcccgctcga cctgaccggg ctgtgggaga tcgccgatct cgaccggccc gagctcaagc
     2401 cgccgtcctg gacgccggtg acaccgccgc gactgctccc gcccgacgat gacgagccgg
     2461 ccgacgtgtt cgccgcgatc cgcgccgggg acatcctcgt ccaccatccg tacgagtcgt
     2521 tcacggcgtc cgtcgagcgg ttcatcaccc aggctgccga cgaccccgac gtcctgacga
     2581 tcaagcagac gctgtaccgg acgtccgggg actcgccgct cgtccagtcc ctgattcgcg
     2641 ccgccgagcg cggcaagcag gtcgtggtcc tggtcgagat caaggcccgc ttcgacgagg
     2701 aggcgaacat catctgggcc cgcaagctcg aacgggcggg cgcccacgtc gtgtacgggc
     2761 tggtcggcct caagacgcac tcgaagacgt cgctggtggt ccgccgcgag gggtcggggc
     2821 ttcgccgcta cgtgcacatc gggaccggca actacaacca caagaccgcc cggctgtacg
     2881 tcgatctcgg gctgctgacc tgtcgccccg agatcggcgc ggacgtcacc gacctgttca
     2941 acgtgctgac cggcctgtcg cgccagcgaa cgttccgccg gctgctggtc gccccgcaca
     3001 gcctgcgctc gcggttcctc gacctggtcg agcgcgagat cgggttcgcg gccgcgggca
     3061 agccggcccg gatcgtgctg aagctcaacg cgatcgtgga cgtggcggtc atcgaggcgc
     3121 tctaccgggc atcgaacgcc ggggtcgagg tcgacctgat cgtccgtggc gcgtgttcgc
     3181 tgcaaccggg gctgcgcggg atctccgagc ggatccgggt ccggtcgatc atcggcgagt
     3241 tcctcgagca ctcgcggatc tggagcttcg acaacggcgg cgaccgcgag tggtacatcg
     3301 gctcggccga cctcatggat cgcaacctgg accgacgggt cgaggcggtc accccggtcg
     3361 aggatcccga ggcgcagtcg cggctggcca cgatcatcga cgtcatgctc gccgacgacc
     3421 ggcgatcgtg gcagctccag cccgacgccc gctggttgcg caccgaggtg ctgctgggtc
     3481 gcgcgggtac cgtcgacacg ttcgaggccc tcaaggagga agccctcgac cgcgcgcagg
     3541 tcgcggtcgt cccgcatcgc ccgggtgccg gcacgggctc gctggacccg cgcgcatgag
     3601 tcc
//
LOCUS       DATDDI010000027         2584 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_687165, whole genome shotgun sequence.
ACCESSION   DATDDI010000027 DATDDI010000000
VERSION     DATDDI010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687165"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1554)
                     /locus_tag="VIU37_00440"
     CDS             complement(<1..1554)
                     /locus_tag="VIU37_00440"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6012433.1"
                     /translation="MSFDLLGLSPDLLRSVAHEGYTEPTPVQREAIPLVLAGRDLLAG
                     AQTGTGKTAAFVLPMLQLLHASRVAGRPVVRALILAPTRELALQVEASVRTYGAQRPI
                     RSTTIYGGVGFDPQVRALRAGPEIVVATPGRLLDHITQRTVDLSHVEILVLDEADRML
                     DMGFIRDIRKILAVLPARRQNLLFSATFSDEIRRLAADFLDQPAAVQVSPRNQATDLV
                     TQVVHPVDRERKRELLSHMIKSGRIDQALVFTRTKHGANRLATQLEHDGILATAIHGN
                     KSQPQRVRALADFKAGRFAVLVATEVAARGIDIDALPHVVNFELPMVPEDYVHRIGRT
                     GRAGVDGDAVSLVCVDELKLLHEIERVLGHPIPSETIEGFEPDPRIRPEPILRGGLGG
                     VRPSSGARSGFGGARGPRPMSGPRPMSGARYQPVPAHRGTGNAAPSFQPRQPGADGHS
                     TGRPSPAFESSPYRGPRTGGTARPGAAMPHAGTPRSGAPTRTPHFGAGHPSPRRPGQG
                     IGNQPVGRPA"
     gene            complement(1738..2127)
                     /locus_tag="VIU37_00445"
     CDS             complement(1738..2127)
                     /locus_tag="VIU37_00445"
                     /inference="COORDINATES: protein motif:HMM:NF013962.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY6012434.1"
                     /translation="MAKQFVVQLKNEPGAMATLAEALAARGVDLRAIGGGSMGDSGHV
                     IMTTADDETAKAILDDGGYTYIEGESILAEVDDRPGGMARLSRALADAGVNIIGHLFL
                     GRWGDRAMFTFVVDKPEVARPILERKG"
     gene            2211..>2584
                     /locus_tag="VIU37_00450"
     CDS             2211..>2584
                     /locus_tag="VIU37_00450"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6012435.1"
                     /translation="MLVTPIGTDLRAAIAAALATETPDPGTRATTVAAGIDWSSIAWG
                     EPGDRPLLLVHGVTASARIWWRVGPALAASGRRVTAVDLPGHGRTAGWLGHHRFRDNA
                     ADLAAWIHEAGLASPALQVVGH"
BASE COUNT          347 a          873 c          993 g          371 t
ORIGIN      
        1 tgccggtcgg cccacgggct gattcccgat gccctggccc ggtcgacgcg gcgacggatg
       61 accggccccg aagtgcggcg tcctggtggg agcgccggat ctcggcgttc cggcgtgcgg
      121 catggcagcc ccgggccggg cggtgccacc cgtgcgcggt ccacgatacg gactggactc
      181 gaatgccgga ctgggccgac ccgtggagtg cccatcggca ccaggctgtc gcggttggaa
      241 cgacggcgcg gcattgccgg taccacggtg cgcgggcacc ggctggtacc gcgcgccact
      301 catcggtcgc gggccactca tcggtcgcgg gcctcgagcg ccgccgaagc cggaacgagc
      361 gccactcgac ggtcgcacgc caccgagacc gcctcgcagg atcggctccg ggcggatgcg
      421 cgggtcgggc tcgaagccct cgatcgtctc cgacgggatg gggtggccca gcacgcgctc
      481 gatctcgtgc agcagcttca gctcgtcgac gcagaccagc gagacggcat cgccgtcgac
      541 gccggcgcga ccggtccgcc cgatccggtg gacgtaatcc tcgggcacca tcggcagctc
      601 gaagttgacg acgtgtggca gcgcgtcgat gtcgatgcct cgcgccgcga cctcggtcgc
      661 caccaggacc gcgaaccggc cggccttgaa gtcggccagc gcgcgaacgc gctgcggctg
      721 gctcttgttg ccgtggatcg ccgtggcgag gatcccatcg tgctcgagct gcgtggcaag
      781 ccggttcgcc ccgtgcttgg tccgggtgaa gaccagggcc tggtcgatcc gcccgctctt
      841 gatcatgtgg ctgagcagct cgcgcttccg ctcacggtcg accgggtgga cgacctgggt
      901 cacgaggtcc gtcgcctggt tgcggggcga gacctggacg gccgcgggct ggtccaggaa
      961 gtcggcagcc agccgccgga tctcgtccga gaaggtcgcc gagaagagca ggttctggcg
     1021 gcgcgcgggg aggaccgcga ggatcttgcg gatgtcgcgg atgaacccca tgtcgagcat
     1081 ccggtcggct tcgtcgagga cgaggatctc gacgtgcgac aggtcgacgg tccgctgggt
     1141 gatgtggtcg aggagccggc cgggcgtggc gacgacgatc tcgggtccgg cgcgaagggc
     1201 gcggacctgc gggtcgaagc cgacgccgcc gtagatcgtg gtcgaccgga tcgggcgctg
     1261 ggcgccgtag gtccggacgc tcgcctcgac ctggagcgcg agctcgcgcg tcggggcgag
     1321 gatcagtgcg cggacgaccg gccggcccgc cacgcgcgag gcgtggagga gctggagcat
     1381 cggcagcacg aacgccgcgg tcttgccggt cccggtctgg gcgccggcga gcaggtcgcg
     1441 gccggccagg acgagcggga tggcttcgcg ctggacgggg gtgggttccg tgtagccctc
     1501 gtgggcgacg gaacgaagga ggtcgggcga cagcccgagc agatcgaatg acatggagga
     1561 aacgctcctg acggggccct cccgcagctg cggggcccgg tctgggcgtg aggtggatcg
     1621 gggtcggacg gtgcgagaaa ccggggcgct gaccggagcg cccatcgaac acgagtgggc
     1681 gcagcataca cgacgacgga cgaacggtcg cccggccggc gggtccgagg cggtggctca
     1741 gcccttgcgc tcgaggatcg gccgtgccac ctcgggcttg tcgacgacga aggtgaacat
     1801 ggcgcgatcg ccccaccggc cgaggaagag gtggccgatg atgttcaccc cggcatcggc
     1861 gagggcgcgc gacaggcgag ccatcccgcc cggtcgatcg tccacctcgg ccaggatcga
     1921 ctctccctcg atgtaggtgt agcccccatc gtcgaggatc gccttggccg tctcgtcgtc
     1981 ggcggtcgtc atgatcacgt ggccgctgtc gcccatgctg ccgccgccga tcgcgcggag
     2041 gtcgacgccg cgcgcggcca gcgcctcggc gagggtcgcc atggcgccgg gctcgttctt
     2101 caattggacg acgaactgct tggccacttc gaacctccgg ggtcgtgggg tcgtgattct
     2161 acgggtcgcg gtggggtcgt ggtagggtcg ctgcgcctga agctcgcgag gtgctcgtga
     2221 ccccgatcgg gaccgacctt cgggcggcca tcgccgccgc actcgccacg gagacgccgg
     2281 atcccggcac ccgggcgacc accgtcgccg ccgggatcga ttggtcgtcg atcgcctggg
     2341 gcgagcccgg cgatcgcccg ctgctgctcg tccacggcgt cacggcgtcg gcccggatct
     2401 ggtggcgcgt cggtccggcg ctggcggcga gcggccggcg ggtgaccgcg gtggacctgc
     2461 cgggtcacgg ccggacggcc ggctggctcg gccaccaccg gtttcgcgac aacgccgccg
     2521 acctggcggc gtggatccac gaggccgggc ttgcttcacc tgccctccag gtcgtcggcc
     2581 acag
//
LOCUS       DATDDI010000028         1735 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_125291, whole genome shotgun sequence.
ACCESSION   DATDDI010000028 DATDDI010000000
VERSION     DATDDI010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125291"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..>1735)
                     /locus_tag="VIU37_00455"
     CDS             complement(118..>1735)
                     /locus_tag="VIU37_00455"
                     /inference="COORDINATES: protein motif:HMM:NF028476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase family 65 protein"
                     /protein_id="HEY6012436.1"
                     /translation="KPIIARYRDEKQVNTAFDALCAYWDDLLGIFQVKSPDEHTNRVV
                     NVWNAYQCMVTFNLSRSASLFESGIGRGMGFRDSTQDLLGFVHMVPERARQRILDIAA
                     TQLPTGGAYHQYQPLTKRGNDAVGSGFNDDPAWLVLAVAAYVKETGDLAILDEAIPYD
                     NEPGTERSLADHLTRSIDYTLERLGPHGLPLIGRADWNDCLNLNCFSQTPGESFQTTE
                     NREGGVAESVFIAGLFVLAANELAAIEDHRGEPAEASRLRRAAEGMVAAVDAHGWDGE
                     WFRRAYDFFGDPVGSAVNDEGQIFIEPQGICILAGIVLEDGRAVRALASVRERLATPH
                     GIVLQQPAFTRYQLRLGEISSYPPGYKENAGVFCHTNPWLMIAEALAGNHEGALDYYL
                     RINPSAREPISDVHRCEPYVYAQMIAGRDAPAQGEAKNSWLTGTAAWNYVAATQWIVG
                     IRPELDGLRIDPRFPAGWGEIRIARRFRGTTYRIVVHPATTSGASGARVGRLVVDGRT
                     IDGNLAPLPTGPAGDIRVDAYLEVPAAAPS"
BASE COUNT          247 a          589 c          631 g          268 t
ORIGIN      
        1 gctacgcgac ctcgtacgag cggatcgagg aggccctccg ccggatcggg cggttcgtcg
       61 agcggacgcg gcagggctga cggcatcgga acaggccggt cgcgccggcc cggggcgtca
      121 cgacggcgcg gcggctggca cctcgagata agcgtccacc cggatgtcgc ccgccggccc
      181 ggtcggcagc ggggcaaggt tgccgtcgat cgtccggccg tcgacgacga ggcggccgac
      241 ccgtgcgccg ctcgccccgc tcgtggtggc cgggtgcacg acgatccggt aggtggtgcc
      301 tcggaagcgg cgtgcgatcc ggatctcgcc ccagccggcc gggaaccgcg gatcgatccg
      361 cagcccatcg agctccggcc ggatcccgac gatccactgc gtcgccgcca cgtagttcca
      421 ggcggccgtc ccggtcagcc acgagttctt cgcctcgccc tgggcgggcg cgtcgcggcc
      481 ggcgatcatc tgggcgtaga cgtacggctc gcagcggtgg acgtcggaga tcggttcgcg
      541 ggcggacggg ttgatccgca ggtagtagtc gagcgcgccc tcgtgattgc cggcaagcgc
      601 ctccgcgatc atcaaccacg ggttcgtgtg gcagaagacc ccggcgttct ccttgtaccc
      661 cggcgggtac gacgagatct cgccgagccg gagctggtac ctcgtgaagg ccggctgctg
      721 gaggacgatc ccgtgcggcg tggcgagtcg ctcgcggacg gaggcaaggg cgcggaccgc
      781 ccggccgtcc tcgagcacga tccccgcgag gatgcagatg ccctgcggct cgatgaagat
      841 ctggccctcg tcgttgacgg ccgatcccac cgggtcgccg aagaagtcgt acgcccggcg
      901 gaaccattcg ccgtcccagc cgtgggcgtc gacggcggcg accatcccct cggccgcgcg
      961 ccggagccgg ctcgcctcgg ccggttcgcc ccggtggtcc tcgatcgcgg cgagctcgtt
     1021 cgcggcgagg acgaacaggc ctgcgatgaa caccgactcg gcgaccccgc cctcccggtt
     1081 ctcggtggtc tggaacgact cgccgggcgt ctgcgagaag cagttcaggt tcaggcagtc
     1141 gttccagtcg gcccgcccga tgagcggcag cccatgcggt ccgagccgct cgagcgtgta
     1201 gtcgatcgac cgggtgaggt ggtcggccag cgaccgctcc gtgccgggct cgttgtcata
     1261 cgggatcgcc tcgtcgagga tggcgaggtc gccggtctcc ttcacgtacg cggcgaccgc
     1321 gagcacgagc caggccggat cgtcgttgaa cccggacccg accgcatcgt tcccgcgctt
     1381 ggtcagcggc tggtactggt ggtaggcccc gccggttggg agctgggtcg cggcgatgtc
     1441 gaggatccgc tggcgcgccc gctccgggac catgtggacg aacccgagca ggtcctgcgt
     1501 cgaatcccgg aagcccatcc cgcgtccgat cccggactcg aacaaagagg ccgagcggga
     1561 caggttgaac gtgaccatgc actggtaggc gttccagacg ttgaccacgc ggttggtgtg
     1621 ctcgtcgggg gacttgacct ggaaaatgcc gaggaggtca tcccagtagg cgcacagggc
     1681 atcgaaggcc gtgttgacct gtttctcgtc ccggtacctg gcgatgattg gcttg
//
LOCUS       DATDDI010000029         2447 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_333447, whole genome shotgun sequence.
ACCESSION   DATDDI010000029 DATDDI010000000
VERSION     DATDDI010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333447"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..321)
                     /locus_tag="VIU37_00460"
     CDS             complement(<1..321)
                     /locus_tag="VIU37_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012437.1"
                     /translation="MRTIRAAHRSWFLALAAGASLLVAACGGAAQSANPAPASASDVP
                     PSTAPAESATSSASAAACGTYSGPATTISYAMWGDTTELANQQKIVDAFSALNPSITV
                     KVTVA"
     gene            complement(339..1658)
                     /gene="melA"
                     /locus_tag="VIU37_00465"
     CDS             complement(339..1658)
                     /gene="melA"
                     /locus_tag="VIU37_00465"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: protein motif:HMM:NF011657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEY6012438.1"
                     /translation="MARIALVGAGSVEFTRNLLGDFFSYPELRDAEIALHDIDPDRLD
                     TAMRMATWTANALGAEPSVHAYLDRREALRGADFVINTIQVGGARATQLDFDVPGRYG
                     LRYTINDTINAGGVLRGLRTIPVALGIAVDIAEVCPDALFLNYTNPMGMVVRAVSEAV
                     GVPTVGLCHSVYWTVHTLGEYLGIPFTEIDAESAGVNHLAWVTRLEHRGVDLYPALRE
                     FVDGGGVPDDDLVRADLFRRFGRYPTEASEQQAEYSPWYIPKADLVERLHVPIGEYLD
                     RVAHNLDEFAETKRKLAAGEPFEIERSGEYAAVIVHSMVTGQPARIVANVPNDGGRLI
                     TNLAGDACVEVPALVDGLGVHPTAVAPLPPQCAAYTRPAVDTQELTVRAALDEDRDLV
                     YHAVLTDPQAQARLTLDEAWRMTDELIDAEAEWLPGWLGGAAPDWTS"
     gene            complement(1658..>2447)
                     /locus_tag="VIU37_00470"
     CDS             complement(1658..>2447)
                     /locus_tag="VIU37_00470"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY6012439.1"
                     /translation="SGEFRDVVAVVDALKGRVPTVAIVHVPGSTLDRTADFVVRSAGG
                     PSRVPVMTKTFASTLVAAELVLAELLGGERAERIGGGIARAADHAEAAIDAAEARVPA
                     LADALVGARHLFVVGSGAAHPAALEAALKLKEMAIVHAEGSESWEMASGVATIIDGES
                     VVVALAPHGPGCEATVDVARHAAGWGARVVEVAPAISIEGADLLPLAAAAEEDHAPLT
                     TVAPVALLAFALARRRGHDPDHPDWVERYHSQGLRHIVLDGKES"
BASE COUNT          345 a          856 c          898 g          348 t
ORIGIN      
        1 ggccacggtg accttcacgg tgatggaggg attgagggcg ctgaaggcat ccacgatctt
       61 ctgctgattg gcgagctcgg tggtatcgcc ccacatcgcg tagctgatgg tcgtcgccgg
      121 accgctgtag gtgccgcagg cggcggcgct cgccgacgag gtcgccgact cggcgggtgc
      181 cgtcgacggc ggcacgtcgc tggccgatgc cggtgcgggg ttggccgact gcgcggcgcc
      241 gccgcacgcg gccaccagca ggcttgcccc ggccgccagg gccaggaacc aggaacgatg
      301 ggcggctcgg atggtgcgca ttgccggttc ctccttggtc acgacgtcca gtccggagcg
      361 gcgccaccga gccatcccgg cagccactcc gcctccgcat cgatcagctc gtcggtcatg
      421 cgccaggcct cgtcgagcgt cagccgagcc tgggcctggg gatcggtcag caccgcgtgg
      481 tagacgaggt cgcggtcctc gtcgagggcc gcgcgaaccg tcaactcctg cgtgtcgacc
      541 gcgggacggg tgtaggcggc gcactgcggg ggcagcggcg cgacggcggt cgggtggacc
      601 cccagcccgt cgacgagcgc cgggacctcg acgcacgcgt cgccggcgag gttcgtgatc
      661 aggcggccgc cgtcgttggg gacgttggcc acgatccgcg ccggctggcc ggtgaccatc
      721 gaatggacga tgaccgcggc gtactcgccg ctccgctcga tctcgaacgg ctcaccggcc
      781 gccagcttgc gcttcgtctc ggcgaactca tcgaggttgt gggctacgcg gtcgaggtac
      841 tcgccgatcg gcacgtggag ccgctcgacg agatccgcct tcgggatgta ccacgggctg
      901 tactcggcct gctgctccga cgcctccgtc gggtacctgc cgaaccgccg gaacaggtcg
      961 gcccggacca gatcgtcgtc cggaacgccg ccgccgtcca cgaactcgcg gagcgccggg
     1021 tagaggtcga cgccccggtg ctcgagacgc gtcacccagg caaggtgatt gacgcccgcc
     1081 gattcggcgt cgatctccgt gaacgggatg cccaggtact cgccgagcgt gtggacggtc
     1141 cagtagaccg agtggcacag cccgaccgtg ggcaccccga cggcctcgct cacggcccgg
     1201 acgaccatgc ccatcgggtt ggtgtagttc aggaacagcg cgtccgggca gacctcggcg
     1261 atgtcgacgg cgatcccgag cgcgaccggg atcgtgcgca ggccgcggag gacgccaccg
     1321 gcgttgatcg tgtcgttgat cgtgtagcgg agcccgtacc ggccggggac gtcgaagtcg
     1381 agctgcgtcg cccgcgcccc gcccacctgg atcgtgttga tcacgaagtc ggcaccgcgc
     1441 agcgcctcgc gccggtcgag gtaggcatgg acgctgggct ccgcgccgag cgcgttcgcc
     1501 gtccaggtgg ccatccgcat ggccgtgtcc agacggtccg ggtcgatgtc gtgcagcgcg
     1561 atctccgcat cgcgcaattc ggggtacgag aagaagtcgc cgagcaggtt gcgggtgaac
     1621 tcgacgctgc cggcgccgac cagcgcgatg cgcgccatca cgattccttt ccgtccagga
     1681 cgatgtgccg gagaccctgg ctgtgatacc gctcgaccca gtccgggtga tccgggtcgt
     1741 gaccgcgccg tcgagctaac gcgaacgcca gcaaggcgac gggggcgacg gtcgtgagtg
     1801 gggcgtggtc ctcctcggcc gccgcggcga gcgggagcag gtccgcgccc tcgatcgaga
     1861 ttgccggtgc cacctcgacg acgcgggcgc cccagccggc ggcgtggcgg gccacgtcca
     1921 cggtcgcctc gcagcccggc ccgtgcgggg cgagcgccac gacgaccgac tcgccgtcga
     1981 tgatcgtcgc gacacccgag gccatctccc aggactcgga tccttccgcg tggacgatcg
     2041 ccatctcctt gagcttgagg gcggcttcga gcgccgccgg atgggcggcg ccgctcccga
     2101 cgacgaagag atgccgggcg ccgacgagcg cgtcggcgag ggccgggacg cgcgcttcgg
     2161 cggcgtcgat cgcggcctcc gcgtgatccg cggccctggc gatcccgccg ccgatccgtt
     2221 cggcgcgttc gccgccgagc agctccgcca gcacgagctc ggcggcgacg agcgtggagg
     2281 cgaaggtctt ggtcatgacc gggacgcggc tcgggccacc ggccgagcgc acgacgaagt
     2341 cggccgtgcg atcgagcgtg ctgcccggga catggacgat cgcgaccgtc gggacacgac
     2401 ccttcagggc gtccacgacc gcgacgacgt cgcggaactc accggag
//
LOCUS       DATDDI010000030         2622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_62915, whole genome shotgun sequence.
ACCESSION   DATDDI010000030 DATDDI010000000
VERSION     DATDDI010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62915"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VIU37_00475"
     CDS             complement(<1..266)
                     /locus_tag="VIU37_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012440.1"
                     /translation="MTGASTRPRVVVVSGGPGPEHDVSLAGGRAIARGLRASGCAVTT
                     AVVGPDGSWRTGRTPGLAAAAAELAGADVAVPALHGPWGEDGGI"
     gene            complement(263..1483)
                     /gene="alr"
                     /locus_tag="VIU37_00480"
     CDS             complement(263..1483)
                     /gene="alr"
                     /locus_tag="VIU37_00480"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEY6012441.1"
                     /translation="MVATPRSTVWEPQPTLEPAVGPAPADLGPLATAWVDLDVIGANV
                     RLLAEAARGAAVMAVVKADAFGHGAIPVARTALESGATWLGVARIEEAVALREAHLAA
                     PVLAWLLEPRLVPAAVARGIDISASSSADLEGIARAAETAGRRARVHLKLDTGLHRAG
                     VPPSAWPAVLRLAARLASGGLVRVVGVWSHLSHGDVVGHPEIERQQARFADGLAVARR
                     FGVRPEVTHLANTGAVLQGGAIGGTMVRVGAGVYGIDVFGGALGACPLRPALTLTTHV
                     VAVREIAAGDGVGYRHDWVADRPTRLALVPLGYADGLPRGAVGSRMLLHGRSVAVVGR
                     ISMDQAILDAGDAPVAVGDPVVVFGPGRPEVGWMAGATPSVDDWARWAGTIPHDVLSG
                     IGARVDRRYVRSDP"
     gene            complement(1618..2316)
                     /locus_tag="VIU37_00485"
     CDS             complement(1618..2316)
                     /locus_tag="VIU37_00485"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6012442.1"
                     /translation="MTIDVVLVDDQALVRSGFAMLVGSQPDLRVVGEAADGLQALALL
                     ERVAADVVLMDVRMPGLDGVEATRRITAAHPGRPRIVVLTTFDLDEYAFAALQAGASG
                     FLLKDALPEDLLRAIRTVHAGDAVVAPSTTRRLIAHYVQAAPPGVAGTDPTRRPRPAT
                     GANEAIETLTEREREVWLEIARGLTNGEIATELGISEATVKSHVGNVLAKTGSRDRVA
                     LVLLAYERGLVPAG"
     gene            complement(2313..>2622)
                     /locus_tag="VIU37_00490"
     CDS             complement(2313..>2622)
                     /locus_tag="VIU37_00490"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6012443.1"
                     /translation="LTNVLKHAGRAETLVVVTAEPRRLLVRISNGPGEREPASDPGTG
                     LGLTGMRERVRLLGGVLRAGRRPDGGFEVIADLPFVVAAERDPAASPATAADGGWVAR
                     "
BASE COUNT          367 a         1029 c          934 g          292 t
ORIGIN      
        1 tggattccgc cgtcctcgcc ccacggccca tggagcgccg ggacggccac atcggcaccg
       61 gcgagctccg cggccgcggc agcgagcccc ggcgttcggc cggtccgcca cgacccgtcg
      121 ggcccgacga ccgcggtcgt gaccgcgcat cccgaggcgc gcaggccccg cgcgatcgcc
      181 cggcccccgg ccagcgagac gtcatgttcg ggcccggggc ccccggacac cacgaccacg
      241 cgcggccgtg tcgacgcgcc ggtcacggat ccgagcgcac gtaccgtcga tccacccgag
      301 cgccgatccc ggacagcacg tcgtgaggga tcgtgcctgc ccagcgcgcc cagtcgtcga
      361 cgctgggcgt cgcgccggcc atccagccaa cctcgggtcg acccggtccg aacacgacca
      421 ccgggtcgcc cacggccacg ggcgcgtcgc cggcgtcgag gatcgcctgg tccatgctga
      481 tccggccgac gaccgcgacc gagcgcccgt gcagcagcat ccgggacccc accgcgccac
      541 gaggcaggcc gtcggcgtac ccgagcggca cgagggcgag ccgtgtcggg cggtcggcaa
      601 cccagtcgtg gcgatagccc acgccatcgc ccgcggcgat ctcgcgaacg gcgaccacgt
      661 gcgtggtgag ggtgagggcc gggcgcagcg gacaggcgcc gagcgcgccc ccgaagacgt
      721 cgatcccgta gaccccggcg ccgacgcgaa ccatcgttcc cccgatcgcc ccgccctgga
      781 ggactgcgcc cgtgttggcg agatgcgtca cctcggggcg cacgccgaag cgtcgggcca
      841 ccgccaggcc gtcggcgaag cgcgcctgct ggcgctcgat ctcgggatgg cccaccacgt
      901 cgccgtggga caggtgcgac cacaccccga cgactcggac gagcccgccc gacgcgagcc
      961 gcgcggcaag tcgaaggacg gcgggccagg cggagggcgg tacgccggcg cggtggagtc
     1021 ccgtgtcgag cttcaggtgc acccgagcgc gccggccggc ggtttcggcc gcgcgcgcga
     1081 tgccttcgag atcggccgaa ctcgaggcgg aaatgtcgat cccacgggcg accgctgccg
     1141 gcaccagccg cggctcgagc agccaggcga ggaccggcgc cgccaagtgg gcctcccgca
     1201 gggcgaccgc ctcctcgatc cgtgccacgc ccagccaggt ggcacccgac tcgagggccg
     1261 ttcgggcgac cgggatggcg ccgtggccga aggcgtcggc cttgacgacg gccatcaccg
     1321 ccgccccgcg ggccgcttcc gcgagcagcc ggacgttcgc cccgatcacg tcgaggtcga
     1381 cccaggccgt cgcgagcgga ccgaggtcgg cgggtgccgg gccgacggct ggctcgagcg
     1441 tcggttgggg ctcccagacc gtcgagcggg gggttgcgac catggccccg accgtaccgg
     1501 ccgggccgcg tgtcgcgcat cggagcgcgg gcgggaaccc actccgaccg ggggtggaac
     1561 gatgaccagg aactccccgc gcgctccacc cggggtcgga ggtggcaggg gaaccgctta
     1621 gccggccggg acgaggcctc gctcgtacgc cagcagcacc agcgcgaccc gatcgcgact
     1681 gccagtcttg gccagcacgt tcccgacgtg cgacttcacg gtcgcttcgg agatcccgag
     1741 ctcggtcgcg atctcgccgt tggtgagccc ccgggcgatc tcgagccaca cctcgcgctc
     1801 gcgctcggtc agggtctcga tcgcctcatt cgccccggtg gcgggtcgcg gccgacgcgt
     1861 cggatccgtg cccgcgaccc cgggcggcgc cgcctggacg tagtgcgcga tcaaccggcg
     1921 ggtcgtgctg ggcgcgacca cggcatcgcc ggcatggacc gtccggatcg cacgcagcag
     1981 gtcctccggc aacgcgtcct tgagcaggaa cccggacgcg ccggcctgca gcgcggcgaa
     2041 cgcgtactcg tcgaggtcga aggtcgtcag gaccacgatc cgcggccgtc ccggatgtgc
     2101 cgccgtgatc cgccgcgtcg cctccacgcc gtcgagcccg ggcatccgaa cgtccatcag
     2161 gacgacgtcc gccgccaccc gttcgagcaa ggcgagcgcc tggagaccgt ccgccgcttc
     2221 gcccacgacc cgcaggtcgg gctgcgagcc gaccagcatc gcgaaccccg agcggacgag
     2281 cgcctggtcg tcgaccagga cgacgtcgat cgtcatcgag ccacccagcc gccgtccgct
     2341 gccgtagccg gcgaggcggc cggatcccgc tcggccgcga cgacgaacgg cagatccgca
     2401 atcacctcga acccgccatc cggacggcga ccggcacgga gaaccccgcc gagcagccgc
     2461 acccgctcgc gcatccccgt caggccgagc ccggtgcccg gatcgctggc cggttcgcgc
     2521 tcgcccggtc cgttgctgat ccgcacgagc agccgcctgg gctccgccgt cacgacgacc
     2581 agggtctcgg cccggcccgc gtgcttgagc acgttggtca gc
//
LOCUS       DATDDI010000031         1644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_728868, whole genome shotgun sequence.
ACCESSION   DATDDI010000031 DATDDI010000000
VERSION     DATDDI010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_728868"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..269
                     /locus_tag="VIU37_00495"
     CDS             <1..269
                     /locus_tag="VIU37_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012444.1"
                     /translation="AYLAYDVALTRGASLPGGDLRVLAIVVYVVVVLASGSVVTYLVV
                     PQPTGAGTVIRRTAWSAALGFFAAVPIAYLVMVAAVQIVRPLLD"
     gene            393..680
                     /locus_tag="VIU37_00500"
     CDS             393..680
                     /locus_tag="VIU37_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012445.1"
                     /translation="MSIEERHVALPKLYGAPAYARPPVAVVAAPRPFDPDELPLEVFQ
                     TEEERESVAYLAARTYEIQGADRLANGADAGRLRARPFSLRAIAGRLLGGD"
     gene            746..822
                     /locus_tag="VIU37_00505"
     tRNA            746..822
                     /locus_tag="VIU37_00505"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:780..782,aa:Ile,seq:tat)
     gene            complement(817..1593)
                     /locus_tag="VIU37_00510"
     CDS             complement(817..1593)
                     /locus_tag="VIU37_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012446.1"
                     /translation="MTLVTPHRRTPRLGMLVGGSVFGVLLTTAGLGIAYLALETPLVS
                     LLADDRLGGSSHAPIGLGILSLSLIAGGALLLAGANQLAATLARVRTGDGVSGPGARA
                     LASMADDVAVLANVIPGDGRAIPELAIGPFGAAVLHAIPAGRQIRQVGSSWEYRTRDG
                     WMPMDNPLDAANRDAERVRRWFAIADLDFVVRVYAAVIVVDSSIPRSATCAVVTLDQL
                     PAWIGALPGQRSLTPARRLRLRALASAPATLAAGSDGYGW"
BASE COUNT          224 a          591 c          608 g          221 t
ORIGIN      
        1 tcgcgtacct cgcctacgac gtcgccctga cccggggcgc gtcgctgccg ggcggcgacc
       61 tgcgggtgct ggcgatcgtc gtctacgtcg tggtcgtcct ggcgagcggc agcgtcgtca
      121 cctaccttgt cgtgccgcag ccgacgggcg ccggcacggt gatccggcgg acggcgtgga
      181 gcgcggcgct cggcttcttc gccgccgtgc cgatcgccta cctggtcatg gtcgcggccg
      241 tccagatcgt gcgaccgctg ctcgactgac cggccgtgtc gccggtggaa tgggctggtc
      301 gccggcgccc aatcgcggta ctctcgcccg gcaaccatca cggcgcgccc gggtatccgg
      361 ctccacgccg gctcaccgtc gagggtcctc gcgtgtccat cgaagaacgg cacgtcgcac
      421 tgccgaagct gtacggcgcc ccggcctacg cccggccacc ggtcgcggtg gtggcagccc
      481 cgcgaccgtt cgaccccgac gagctcccgc tcgaggtctt ccagacggag gaggagcgcg
      541 agagcgtcgc ctacctggcg gcccgaacgt acgagatcca gggcgccgat cgactcgcca
      601 atggtgcgga tgcgggccgg ctgcgcgccc ggccgttcag cctccgggcg atcgccgggc
      661 gcctgctcgg cggcgactga ccgccggggt cgcgcggggc ccgggtggag ggccggggtg
      721 tagcatcccg ggcgtaccgc tcggcggggg agtagctcaa ttggtcagag cggcgggctt
      781 atatcccgct ggttccaggt tcgagtcctg gctcccctac cacccgtatc cgtcggaccc
      841 ggcggcgagg gtggccggcg ccgacgcgag cgcccggagg cggagccggc gtgccggcgt
      901 caggctgcgc tggccgggca gcgcgccgat ccaggccggc agctggtcca gggtcaccac
      961 agcacaggtc gccgagcggg ggatggagct gtcgacgacg atcaccgcgg cgtagacgcg
     1021 cacgacgaag tcgagatcgg cgatcgcgaa ccagcgccgg actcgctcgg cgtcgcggtt
     1081 ggcggcatcg agcgggttgt ccatcggcat ccagccgtcg cgcgtccggt actcccacga
     1141 cgaacctacc tggcggatct gccgtcccgc cgggatggcg tggaggacgg cagccccgaa
     1201 tgggccgatt gcgagctccg ggatcgcccg gccatcgccc gggatgacgt tggcgagcac
     1261 ggccacgtcg tcggccatcg acgcgagggc gcgcgcaccc gggccgctca ccccgtcgcc
     1321 cgtccgcacg cgcgccagcg tcgcggcaag ctgattggcg ccagccagca ggagggcgcc
     1381 gccggcgatc aacgacagcg acaggatgcc gagcccgatc ggcgcgtgcg agctcccacc
     1441 gaggcggtcg tccgccagca gcgagaccag cggcgtctcc agtgcgagat aggcgatccc
     1501 caggccggca gtcgtcagca ggacgccgaa gacggaaccg ccgacgagca tgccgagccg
     1561 gggagtccgg cggtgtggcg tgacgagtgt catcccgtct acgatgcctg acccttggcg
     1621 atcggccaat gaccaatccg gctg
//
LOCUS       DATDDI010000032         2194 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_166996, whole genome shotgun sequence.
ACCESSION   DATDDI010000032 DATDDI010000000
VERSION     DATDDI010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166996"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VIU37_00515"
     CDS             <1..729
                     /locus_tag="VIU37_00515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012447.1"
                     /translation="GSGVGVGVGSGVGVGVGVGVGAGVGAGVGAGGGVGLGVGCVVGG
                     GEGDAVRTGVAVGVGAPGGVGSEIGGPKVGAGVGAAVGRGVGAVPGRGCERGSEPPVG
                     VASGRGVSLGVIDGEDGGGSEPGADSAGEGDGPAVAAVAVAPGPVGGTTARFGSGEPV
                     IPSTPPWGCGQSATATEATTTMPASATPVSRTSLRRATESVASGDSTLGGTRRDTGRC
                     VAPATTEATSETGRAGLVSAAPIR"
     gene            complement(921..2159)
                     /locus_tag="VIU37_00520"
     CDS             complement(921..2159)
                     /locus_tag="VIU37_00520"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MraY family glycosyltransferase"
                     /protein_id="HEY6012448.1"
                     /translation="MKSLTSGRHGGTPRAGRAGAMPSLILTPLVRRVVLRYKIVDRPD
                     ARRVNVVPVPRSGGLAISAAFLLVATAFLLVNGALDLVPVPASFKPGGAVALLLGGAV
                     AAALGAADDWFDLRARWQLAGQVILAAGAVALGITISFINNPLGGGVIRFEGAFAVGF
                     AMFWIIGMINSINWIDGLDGLSSGVALIAAVTLGLISLTTQVGQPLIAVLCFALAGAL
                     LGFLRWNFHPATIFAGTSGVQFVGYTLAVLSVLGTAKVAVALLVLGVPIIDTFWIIVR
                     RISEGRSPFTPDRSHIHHRLLDLGLSHRQTVLAIYGICVALAILALILTGATQLYAFL
                     GVFVASGLVLFLPTRGGFRRPDELEAESYEPDEDAAPPAPGLGRAAGAAAAPPPVASP
                     PAARPVPADPEPSEPRHEAV"
BASE COUNT          306 a          766 c          881 g          241 t
ORIGIN      
        1 gggtcggggg tcggtgtcgg cgtcggttcg ggcgttggcg tcggggtcgg cgtgggcgtg
       61 ggcgcgggcg tcggcgcagg agtcggcgca ggaggcggcg tgggcctcgg cgtcggctgc
      121 gtggtcggcg gcggagaagg agatgccgtc cggaccggcg tcgccgtcgg cgtcggggct
      181 cccggcggcg tcggcagcga aatcggcggg ccgaaggtcg gtgccggcgt gggcgccgcc
      241 gtcgggcggg gcgtgggggc ggtccccgga cggggttgcg agcgcggcag cgagcccccg
      301 gtcggcgtcg cgtccggacg cggcgtctcg ctcggcgtga tcgacgggga ggacggtggc
      361 ggctcggaac cgggcgcgga ttcggccggc gagggcgacg gaccggcggt ggcggccgtg
      421 gcggtcgccc ccgggccggt gggcggcacg acggccaggt tcggatccgg cgagccggtg
      481 atcccgagca cgccgccctg gggttgcggc cagagcgcca cggcgaccga ggcgaccacg
      541 acgatgcccg ccagcgcgac gcccgtgtcg cggacgagcc tccggcgagc gacggaatcg
      601 gtggcctccg gtgactcgac ccttgggggg acccgcaggg acaccggccg ctgcgtcgcg
      661 ccggcgacga ccgaggccac gagcgagacg ggccgcgcag gcctcgtgtc cgcggcgccg
      721 atccggtagg cgacctcgtc ctcgctgagg atcggcggcg atgcggccgc cgccggtccc
      781 ggcgcggccc ggcgtcccgt cagtcgacgg aagatggcca tgccgacgga ccggtcgacg
      841 atgccgcgga tccgcccgct ggagccgcca ggtcgagtcg gcggcacgtc gccgtggtct
      901 cgcctcatgt cggacggatg ctacaccgcc tcgtggcgcg gctcggacgg ctccggatcg
      961 gccggaacgg gccgggctgc cggtggcgaa gccaccggcg gcggagcggc ggccgcgccg
     1021 gccgcgcggc ccagtccggg agcgggcggg gccgcgtcct cgtcgggttc gtaggattcg
     1081 gcctcgagct cgtcgggtcg ccggaacccg ccccgggtcg gcaggaacag caccagcccc
     1141 gacgccacga acacgccgag gaacgcgtac agctgcgtcg cgccggtcag gatcagcgcc
     1201 aggatggcca gggccacgca gatgccgtag atcgccagga ccgtctggcg atgcgacagc
     1261 ccgagatcga gcagccggtg gtggatgtgc gagcggtccg gggtgaacgg cgatcggccc
     1321 tcggagatgc ggcggacgat gatccagaac gtgtcgatga tcggcacgcc gagcacgagc
     1381 agcgccacgg cgaccttcgc ggtccccagc accgacagca ccgcgagcgt gtagcccacg
     1441 aactggacgc cgctggtccc agcgaagatc gtcgcggggt ggaagttcca gcgcaggaac
     1501 ccgagcagcg cgcccgccag ggcgaagcac aggaccgcga tcagcggctg gccgacctgc
     1561 gtcgtcaggc tgatcaggcc gagcgtgacg gccgcgatca gcgcgacccc ggacgacagg
     1621 ccgtccagcc cgtcgatcca gttgatgctg ttgatcatgc cgatgatcca gaacatcgcg
     1681 aagccgaccg cgaacgcgcc ctcgaaccgg atcaccccgc cgccgagcgg attgttgatg
     1741 aagctgatcg tgatcccgag cgcgaccgcg cccgccgcca ggatcacctg gccggccagc
     1801 tgccagcgtg cgcgcaggtc gaaccagtcg tcggccgcgc cgagcgccgc cgcgaccgcg
     1861 ccaccgagga gcagggcgac cgcgccgccc ggcttgaacg aggccgggac cggcaccagg
     1921 tcgagcgcgc cgttgaccag caggaaggcg gtggcgacga gcaggaacgc ggccgagatc
     1981 gccagtccgc ccgaccgcgg cacgggcacg acgttgaccc ggcgggcatc ggggcggtcg
     2041 acgatcttgt agcggaggac cacccgccgg acgagtggcg tcaggatcag cgacggcatc
     2101 gccccggccc gccctgctcg aggcgtgccg ccgtgccgcc cgctggtcaa ggacttcacg
     2161 ggggccctac cggcacatgc ccgcgttcga ggcc
//
LOCUS       DATDDI010000033         1742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_499954, whole genome shotgun sequence.
ACCESSION   DATDDI010000033 DATDDI010000000
VERSION     DATDDI010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499954"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1742
                     /locus_tag="VIU37_00525"
     CDS             <1..>1742
                     /locus_tag="VIU37_00525"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidoglycan-binding domain-containing protein"
                     /protein_id="HEY6012449.1"
                     /translation="QAQAAYDSAVNERDVLRHPSTPQVASARAQIAQVSASLVTARQA
                     AGGPTPQQLAQAQAQLAQAQAGVDAAREATQGPTASQLAQAQAQLAQTQAQLAAAEAA
                     ANGPSAAAIAQAQAQVTQASTALAADQAALAAAQQALASCQHPAPNPTPDPAATPGAT
                     PSPTPAPPSCDPAALQLEVAQAQGRITNDQAQLTAAQAALAELTSGANAAQAQANLTA
                     ARAAEAAAQAALDALTAGVSPSQHAQLASAQAGLAAAQAALDALTGGDDKATAAGLSA
                     ATAQLRAAQAALDALLHPTTGQLKAADDAVAVARAQLAAARTAMGAPRGIVTQLADVG
                     AVVEAGQPLYTLDGSHPVVLLTGTTPTWRALRSGMTDGADVRELERNLADLGFDSADA
                     ALTVDDHWDDATTAAVKAWQHALGVPETGTIELGQIVVEPGPVRVTDTAIDLGGTVAP
                     GGAVLTGTTTNRIVSVDLDTVAQGNVKVGDPVDITLPDGVTTTTGTVTSVGSVATAGD
                     NGANPTIPVTITLDDPAATGVVDQAPVQVAITTATATDVLAVPVQALVALLEGGYAVE
                     VVNGATTAYVGVQL"
BASE COUNT          253 a          716 c          608 g          165 t
ORIGIN      
        1 ccaggcgcag gcggcctacg actcggcggt caatgaacgg gacgtgctgc gccacccatc
       61 cacgccccag gtcgcctccg ctcgagccca gatcgcgcag gtcagcgcgt cgctggtgac
      121 cgcccggcag gcggccggcg gacccacgcc gcagcagctc gcccaggccc aggcgcagct
      181 ggcccaggcc caggccgggg tcgatgcagc ccgggaggcg acccagggac cgaccgcgtc
      241 ccagctcgcc caggcccagg cccagctggc ccagacccag gcgcagctgg cggccgccga
      301 ggcggccgcg aacggcccga gcgccgcagc gatcgcgcag gcgcaggcgc aggtgaccca
      361 ggcgtcgacc gccctggctg ccgaccaggc cgcgctcgca gccgcccagc aggccctggc
      421 gtcctgccag caccccgccc cgaacccgac accggacccg gcggcgaccc cgggcgccac
      481 gcccagcccc acaccggcgc caccatcgtg cgacccggcc gcgctccagc tcgaggtcgc
      541 ccaggcccag ggccgcatca ccaacgacca ggcccagctc acggccgccc aggcggccct
      601 ggcggagctg acctcgggcg cgaacgcggc acaggcccag gccaacctga cggccgcacg
      661 agccgccgag gccgccgcgc aggcggcgct cgacgccctg accgccggcg tctcgccctc
      721 gcagcacgcg cagctcgcct cggcgcaggc gggtctcgcg gcggcgcagg ccgcgctcga
      781 cgccctgacc ggtggcgacg acaaggcgac ggccgccgga ctgtcggcgg ccacggccca
      841 gctccgagcc gcgcaggccg ccctcgacgc gctccttcac cccacgacgg ggcagctcaa
      901 ggccgcggac gacgcggtcg cggtcgcccg ggcccagctc gcagccgcgc gaaccgcgat
      961 gggcgctccg cgcgggatcg tgacccagct cgccgacgtc ggcgccgtgg tcgaggccgg
     1021 ccagccgctc tacacgctcg acggcagcca cccggtggtg ctcctcaccg gtacgacgcc
     1081 gacctggcgg gcgctgcgct ccggcatgac cgatggcgcg gacgtcaggg agctcgaacg
     1141 taacctggcc gacctgggct tcgattcggc cgacgccgcc ctgacggtcg acgatcactg
     1201 ggacgacgcg accaccgccg ccgtcaaggc ctggcagcac gcgctcggcg tcccggagac
     1261 cggcaccatc gagcttgggc agatcgtcgt ggagcccggg ccggtgcggg tcacggacac
     1321 ggcgatcgat ctcggcggaa ccgtcgcacc cggtggtgcc gtgctgaccg gcacgaccac
     1381 caaccggatc gtctcggtcg acctcgacac ggtcgcgcag ggcaacgtca aggtcggcga
     1441 cccggtcgac atcacgctcc cggacggcgt cacgacgacg accggaacgg tcacctccgt
     1501 cggctcggtg gcgaccgccg gcgacaacgg cgccaacccg acgatcccgg tcacgatcac
     1561 cctcgacgac cccgccgcga cgggcgtcgt cgaccaggcg ccagtccagg tggcgatcac
     1621 cacggcgacc gcgacggacg tcctggccgt gcccgtccag gcgctggtcg ccctgctcga
     1681 gggtggctat gccgtggagg tcgtgaacgg cgcgaccacc gcctacgtcg gtgtccagct
     1741 cg
//
LOCUS       DATDDI010000034         1919 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_522, whole genome shotgun sequence.
ACCESSION   DATDDI010000034 DATDDI010000000
VERSION     DATDDI010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VIU37_00530"
     CDS             <1..241
                     /locus_tag="VIU37_00530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012450.1"
                     /translation="PAVAIVLDLPPAVILARNADRLGRVVDEGVVLRHLARLRRSLDR
                     SAAPFDDEGFDRVVLLRDPAEVDSVVVLRRPAGTA"
     gene            complement(245..1093)
                     /locus_tag="VIU37_00535"
     CDS             complement(245..1093)
                     /locus_tag="VIU37_00535"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6012451.1"
                     /translation="MPAGVATVIFGLVAAVTWGTGDFGGGLLSRRTPLFGVVLASQLV
                     GMAVAFGLAIVRGEGFPSTADIGWSVVSGLAGGIGISALYQGLAVGRMGVVAPITGVM
                     AALIPVGVGIAFEGLPPPLVVFGIGLALVAVVLVSRVPDERAGPSGVGLALVAGTTIG
                     LLGVTIAQIGDGHVFGPLTILRGSEALLVGAIVVVGRKSWRSERRLWPRLAGVGIMDM
                     AGNGAFILAVQAGSLAVAAVLSSLYPVTTVVLATIVLREPVTRSHAIGIALAAAAIAC
                     IAGGSA"
     gene            complement(1102..>1919)
                     /locus_tag="VIU37_00540"
     CDS             complement(1102..>1919)
                     /locus_tag="VIU37_00540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012452.1"
                     /translation="IDRLQAQLNGLVGKEPRETLPARRDAAALEIEQKTSALDALGPI
                     AREPRARERLEVEVRDQEDALERSRDDEANARARVEANAVDAEQVAGQAERLAAWQEQ
                     LASLQRRQRVYDLTLQAIDRAERATMKTATRYLEAHMVRDLALATDGRYRRVRVDDRT
                     LDIEVHAPEKADWVPIGSLSQGTIDLVFLVARLGLVRLITGDRRPPLVFDDPFVTFDD
                     ARAGRAVELLKTVAADFQVIYLTTSDRYDGIADAVVELLGPTAMDSSPAETPA"
BASE COUNT          271 a          715 c          692 g          241 t
ORIGIN      
        1 ccccgctgtc gcgatcgtgc tcgacctgcc gccggcggtg atcctggccc ggaacgcgga
       61 ccgcctgggc cgggtggtcg acgagggcgt ggtcctgcgc cacctggccc ggctgcgccg
      121 gtccctggac cggtccgcgg cgccgttcga cgacgagggg ttcgatcgcg tggtcctgct
      181 ccgcgacccg gccgaggtgg attccgtcgt cgtgctgcgg cgacccgccg ggaccgcctg
      241 accgctaggc cgatcccccg gcgatgcacg cgatggccgc ggccgccagc gcgatcccga
      301 tcgcgtggct gcgagtcacc ggctcgcgca gcacgatcgt ggcgagcacc acggtcgtga
      361 ccgggtagag cgacgagagg acggccgcga ccgccagcga gcccgcctgg accgccagga
      421 tgaatgcgcc gttaccggcc atgtccatga tcccgacacc cgccagtcgc ggccacagcc
      481 gccgctccga ccgccacgac ttgcgaccca cgacgacgat cgcgccgacg agaagcgcct
      541 cggagccgcg gaggatggtc agcggcccga acacgtggcc gtcgccgatc tgggcgatcg
      601 tgacgccgag gaggccgatc gtcgtgccgg cgacgagggc gagcccgacg ccggacggac
      661 ccgcgcgctc atcggggacg cgcgacacga ggacgaccgc gacgagggcg aggccgatgc
      721 cgaacacgac cagcggcggc ggcaggccct cgaacgcgat cccgacgccc accgggatga
      781 gcgcggccat gacgcccgtg atcggcgcca cgacccccat ccggccgacg gcgagcccct
      841 ggtagagggc gctgatcccg atgcccccgg cgagcccgct gacgacgctc catccgatgt
      901 cggcggtgga cgggaagcct tcgcctcgca cgatggcgag cccgaaggcg accgccatgc
      961 cgacgagctg ggacgccagg accaccccga acagcggcgt ccgccgggac aggagcccgc
     1021 caccgaagtc gccggtcccc cacgtcaccg ccgcgaccag accgaagatg accgtcgcca
     1081 cgccggcggg catgagctcg gtcaggcggg cgtctccgcg ggcgagctgt ccatggccgt
     1141 cgggccgagg agttccacca ccgcgtcggc gatgccgtcg taccggtccg aggtggtcag
     1201 gtagatcacc tggaagtccg cggcgacggt cttgagcagc tcgaccgccc ggccggcacg
     1261 agcgtcgtcg aacgtcacga acgggtcgtc gaacacgagc ggcgggcgtc ggtcaccggt
     1321 gatcagccgg acgaggccga gccgggcgac caggaagacc aggtcgatcg tgccctggct
     1381 caatgagccg atcgggaccc agtcggcctt ctccggggcg tgcacctcga tgtcgagcgt
     1441 ccgatcgtcg acccggacgc gccggtaccg tccgtcggtc gcgagcgcca ggtcgcgaac
     1501 catgtgcgcc tcgaggtagc gcgtggcggt cttcatcgtc gcccgctccg cccggtcgat
     1561 cgcctggagc gtcaggtcgt agacgcgctg gcgacgctgg agcgaggcga gctgctcctg
     1621 ccaggcggcc agccgttcgg cctgcccggc cacctgttcg gcgtcgacgg cgttggcctc
     1681 cacccgagcc cgggcattgg cctcgtcgtc gcgagagcgc tccagggcgt cctcctggtc
     1741 gcggacctcg acctccagtc gctcgcgggc gcgaggctcg cgggcgatcg gtccgagcgc
     1801 gtcgagcgcg ctggtcttct gctcgatctc gagtgccgcc gcatcacgcc gcgccggaag
     1861 cgtctcgcgc ggctccttgc cgaccagccc gttgagctgt gcctggagcc ggtcgatcc
//
LOCUS       DATDDI010000035         1744 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_21326, whole genome shotgun sequence.
ACCESSION   DATDDI010000035 DATDDI010000000
VERSION     DATDDI010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21326"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VIU37_00545"
     CDS             complement(<1..686)
                     /locus_tag="VIU37_00545"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6012453.1"
                     /translation="MTLTMGRPMREIFGETVAELADEDPRIVMLDGDVGSSTRADIFE
                     KAHPDRYFQMGIAEQNMMGVAAGLATMGLIPFISTFVSFAVVRPLDQIRVLIAQTGLN
                     VKITPGYAGLFTGQTGMSHIIVDDMSIMRAMPGMVTVSPADDVEARQVLRWAAVYDGP
                     CYVRLVRDATARFFGDDYRFEFGKAVTVRDGRDVTLISTGTQLPRVVEAADLLAAGGI
                     DAHVVHVPTI"
     gene            complement(683..1579)
                     /locus_tag="VIU37_00550"
     CDS             complement(683..1579)
                     /locus_tag="VIU37_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEY6012454.1"
                     /translation="MSAQPAADIDAGEVERLEEIARRIRVELVRAVNHARAGHLGGPL
                     SAADLLAALYFHVLRIRPEDPGWPDRDRFILSKGHSSIGLYAAMALRGYFPVEELMTF
                     DAAHSRLQGHPDMTRLPGLDMSTGSLGMGISAGMGMALGARLTGRDSRTYVLLGDGEC
                     QEGEVWEAAMAAARHGLDNLIAIVDHNKLQQYGWPGDGPDGRIPPQVPGELVAKWTAF
                     RWRVLEVDGHDMAAILRVLAEAGRGDGRPVAVIAHTVKGKGVSFMEGHYFWHTRAIKP
                     EEFAVAMADLGEPLPTGEGAPA"
BASE COUNT          253 a          605 c          625 g          261 t
ORIGIN      
        1 ttgatcgtcg ggacgtggac gacatgggcg tcgatgccgc cggcggcgag caggtcggca
       61 gcctcgacca cgcggggcag ctgggtcccg gtgctgatca gggtcacgtc tcgcccgtcg
      121 cggaccgtga cggccttgcc gaactcgaac cggtagtcgt cgccgaagaa gcgggcggtg
      181 gcatcgcgta cgagccggac gtagcacggc ccgtcgtaga cggccgccca gcgcaacacc
      241 tggcgagcct cgacgtcgtc ggccggcgag accgtgacca tccccggcat cgcccgcatg
      301 atcgacatgt cgtcgacgat gatgtggctc atcccggtct gcccggtgaa gagccccgcg
      361 tatcccgggg tgatcttcac gttgagcccg gtctgggcga tgagcacgcg gatctggtcg
      421 agcggccgga ccaccgcgaa cgagacgaac gtgctgatga acgggatcag gcccatcgtc
      481 gccagcccgg ccgcgacgcc catcatgttc tgctcggcga tgcccatctg gaaataccgg
      541 tccgggtggg ccttctcgaa gatgtcggcc cgtgtcgagc tgccgacgtc gccgtcgagc
      601 atgacgatcc gggggtcctc gtcggcgagc tccgcgacgg tctcgccgaa gatctcgcgc
      661 atcggtcggc ccatcgtgag cgtcatgccg gagctccttc gccggtcggt agcggctcgc
      721 cgaggtcggc catggcgacg gcgaactcct cgggcttgat cgcgcgcgtg tgccagaagt
      781 agtggccctc catgaacgac acccccttgc ccttcacggt gtgggcgatc accgcgaccg
      841 ggcggccatc tccgcggccg gcctcggcca gcacgcgcag gatcgcggcc atgtcgtgcc
      901 cgtcgacctc gaggacgcgc cagcggaacg cggtccactt ggcgaccagc tcgccgggga
      961 cctgcggcgg gatccggccg tcgggcccgt cgcccggcca gccgtactgc tggagcttgt
     1021 tgtggtccac gatcgcgatg aggttgtcga ggccgtgccg cgccgcggcc atggcggcct
     1081 cccagacttc gccctcctgg cattccccgt cgccgagcag cacgtaggtt cggctgtcgc
     1141 ggcccgtgag gcgcgcgccc agcgccatgc ccatgccggc ggagatgccc atcccgagcg
     1201 agccggttga catgtcgagc ccgggcaggc gggtcatgtc cgggtggccc tggagccgcg
     1261 agtgcgcggc gtcgaaggtc atgagctcct cgaccgggaa gtacccccgc agggccatcg
     1321 cggcatagag cccgatcgac gagtgaccct tcgacaggat gaaccggtcg cgatccggcc
     1381 agcccggatc ctcgggccgg atccggagca cgtggaagta gagcgccgcg agcaggtcgg
     1441 cggccgacag gggtccgccc aggtgtccgg cgcgcgcgtg gttgacggcc ctgaccagct
     1501 cgacgcggat ccgccgcgcg atctcctcga ggcgttcgac ctcgccggcg tcgatgtcgg
     1561 cggcgggttg cgcgctcatg actcgcgctt ctgctcgtac gagcccggaa cgacgggagg
     1621 ggagaagaag cagacgagct cgagcggctc gggaccatcc gacacggtcg cgtggagggt
     1681 gcccggcgag acccacacgg tcaccccggc ctcgatctcg gcggtctcgt ccggggtgac
     1741 gatc
//
LOCUS       DATDDI010000036         1851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_479142, whole genome shotgun sequence.
ACCESSION   DATDDI010000036 DATDDI010000000
VERSION     DATDDI010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479142"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..1407
                     /locus_tag="VIU37_00555"
     CDS             70..1407
                     /locus_tag="VIU37_00555"
                     /inference="COORDINATES: protein motif:HMM:TIGR01326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase family
                     protein"
                     /protein_id="HEY6012455.1"
                     /translation="MAELDPTTFRPETRALHAGQKPDPATNARAVPIYATTSYVFDDA
                     AHAARLFGLEEFGNIYTRIMNPTTGVFEERVAALEGGVAALGLASGQAAETLSILNLA
                     RAGDNIVASSSLYGGTYNLFTHTLPKVGITTTYVDGSDPSAFGRAINERTKAVFLELI
                     GNPRLDVHDLASIADVAHARGVPVIVDNTFAPLLAQPIKHGADIVIHSATKWIGGHGT
                     AIGGVVVDGGTFDWAASERFKQDFVDPDPSYHGISYTKAFGNLAFILKLRVQGLRDIG
                     AALSPFNAFLFLQGLETLPLRIARHSENALAVARWLETRPEVTWVSYPGLESHPSHKL
                     AKRYLTGGFGGVVTFGVKGGVEAGRRLIDNVQIFSLLANVGDAKSLIIHPASTTHSQL
                     EPEEQIATGTTPDLIRLSVGLEHVDDLIADLEQALAAATAENPADGSLVGAAG"
     gene            1404..>1851
                     /locus_tag="VIU37_00560"
     CDS             1404..>1851
                     /locus_tag="VIU37_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012456.1"
                     /translation="MTLRAPSTRPAGLPTGTGRVETVSLGPFTLENGTTLPDLVVAYR
                     HDGPPPDAAPQVLVVHALTGSADAAGDWWEPLIGEGRALDTTEVGVLCANLLGGRYGT
                     SGPTSLHPRTGRPYGPSFPPVTTVDQARAQWRLLDELGVEELALATG"
BASE COUNT          283 a          704 c          609 g          255 t
ORIGIN      
        1 gcctcgggcc gacgcgagtc ggccttcgcc accggacact ccccgatcgt ccacggagga
       61 cccatcgaca tggcagagct cgacccgacc accttccgac ccgagacccg cgcgctccac
      121 gccggccaga agccggatcc cgcgacgaac gcccgcgcgg tcccgatcta cgccacgacc
      181 agctacgtgt tcgacgacgc ggcgcacgcg gcccggctgt tcgggctcga ggagttcggg
      241 aacatctaca cccggatcat gaaccccacg accggcgtgt tcgaggagcg ggtcgccgcg
      301 ctcgagggcg gcgtcgccgc cctcggcctc gcgtccggcc aggcggcgga gacgctgtcg
      361 atcctcaatc tcgcccgcgc gggcgacaac atcgtcgcgt cgtcgtcgct gtacggcggg
      421 acctacaacc tgttcaccca cacgctgccg aaggtcggca tcaccacgac ctacgtggac
      481 ggcagcgacc cgtcggcctt cgggcgtgcg atcaacgagc ggaccaaggc cgtcttcctc
      541 gagctgattg ggaacccgcg gctcgacgtc cacgacctcg cctcgatcgc cgacgtggcg
      601 catgcccgag gcgtcccggt catcgtcgac aacaccttcg ccccgctcct ggcccagccg
      661 atcaagcacg gcgcggacat cgtcatccac tcggccacca agtggatcgg cggacacggc
      721 accgcgatcg gtggcgtggt cgtggacggc ggcacgttcg actgggccgc gtcggagcgg
      781 ttcaagcagg acttcgtgga tcccgacccg tcgtaccacg ggatcagcta cacgaaggcc
      841 ttcggcaacc tcgcgttcat cctcaagctg cgcgtccagg ggctccggga catcggggcg
      901 gcactcagcc cgttcaacgc cttcctcttc ctgcagggat tggagacgct gccgctgcgg
      961 atcgcccggc acagcgagaa cgcgctggcg gtcgcgcgct ggctggagac gcgacccgag
     1021 gtcacctggg tcagctaccc cggtctcgaa tcgcacccgt cgcacaagct ggccaagcgc
     1081 tacctgaccg gaggcttcgg cggagtcgtg acgttcgggg tcaagggcgg cgtcgaggcc
     1141 ggccggcgcc tcatcgacaa cgtccagatc ttctcgctgc tggccaatgt cggcgacgcc
     1201 aagtcgttga tcatccaccc ggcctcgacc acccattcgc agctcgagcc ggaagagcag
     1261 atcgccaccg gcaccacgcc ggacctgatc cggctgtccg tcggcctcga gcacgtggac
     1321 gacctgatcg ccgacctcga gcaggcgctc gccgccgcga ccgccgagaa ccccgccgac
     1381 gggagtctcg tcggcgccgc cggatgacgc tccgcgctcc atcgacccgg ccggccggtc
     1441 tccccacggg gaccggccgg gtcgagaccg tgtcgctggg gccgttcacg ctcgagaacg
     1501 ggaccacgct tccggacctg gtcgtggcct accggcacga cggtccaccg cccgacgcgg
     1561 cgccgcaggt cctcgtcgtc cacgcgctca ctggttcggc cgacgcggcc ggcgactggt
     1621 gggagccgct gatcggcgag ggccgggccc tcgacaccac ggaggtcggc gtcctgtgcg
     1681 ccaacctgct cggtggccgc tacggcacga gcggcccgac atcgctgcat ccacggacgg
     1741 gccggccgta cgggccgagc ttcccaccgg tgaccaccgt cgaccaggcc cgtgcgcaat
     1801 ggcggctcct cgacgagctc ggcgtcgagg agctcgcgct ggccacgggc g
//
LOCUS       DATDDI010000037         1858 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_42125, whole genome shotgun sequence.
ACCESSION   DATDDI010000037 DATDDI010000000
VERSION     DATDDI010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42125"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1048)
                     /locus_tag="VIU37_00565"
     CDS             complement(<1..1048)
                     /locus_tag="VIU37_00565"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY6012457.1"
                     /translation="MLSSTGVLHPAGAPAASPGSSLDGAHTVRIDESSAVVDAAAKVS
                     PAVVRITASGVTTDQLGGSIPAQGVGSGVIFDAAGWILTNRHVVQIDSNTIASKLTVE
                     LKDGHQYTGRVYGVDTLTDLAIVKIPATDLPYAPIGISADIKVGQLAIAIGSPLGTFS
                     NSVTSGIISGTGRSVVVQSGRRLSNLIQTDAAINPGNSGGPLLDAAGNVIGINTAIAS
                     DSNGIGFAIPIDIARPVMSQALAGKPLERPYLGVRFETIDPAVQAEEHLTVDHGALLI
                     MSPDASGTNQPAIIPGGPAEQAGLREGDVILAVEGQALDAEHPLDLVLSSYAPGQTVS
                     LSVLRDSSTISISIT"
     gene            complement(1332..>1858)
                     /locus_tag="VIU37_00570"
     CDS             complement(1332..>1858)
                     /locus_tag="VIU37_00570"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6012458.1"
                     /translation="RDDLRSSVEQAVDQAAATARRRGVALSVDRPDEPIVIRHDPVRI
                     GQVVSNLVGNAIKFTPRGGKVDVRVRSDPEGGASITVADTGIGIDPAELPRIFDRFFR
                     GARASDARGSGSGLGLAIVKSIVEMHGGSVSVDTHLGAGSTFRVTLPAAPPLEGVADS
                     SSSDDSNRNPGAAS"
BASE COUNT          252 a          625 c          713 g          268 t
ORIGIN      
        1 gggtgatcga gatcgagatc gtcgagctgt cgcggaggac gctgaggctg accgtctggc
       61 cgggggcgta gctcgacagg acgagatcga gcgggtgctc cgcgtcgagc gcctggccct
      121 cgaccgccag gatgacgtcg ccctcccgga ggcctgcctg ctcggcggga ccgccgggga
      181 tgatcgccgg ctggttcgtg ccgctcgcgt cgggactcat gatgaggagc gcgccgtggt
      241 cgacggtcag gtgctcctcg gcctggaccg ccggatcgat cgtctcgaac cgcacgccca
      301 gatacggccg ctcgagcggc ttgccggcga gcgcctggct catgaccggc ctggcgatgt
      361 cgatcgggat cgcgaagccg atgccgttgg agtccgaggc aatcgcggtg ttgatgccga
      421 tgacattgcc cgccgcatcg aggagcggcc cgccgctgtt gccgggattg atggcggcgt
      481 cggtctggat gaggttcgac agccgccgcc cgctctggac gacgacgctc cggccggtac
      541 cggagatgat cccgctcgtc acgctgttgg agaacgttcc gagcgggctg ccgatcgcga
      601 tcgcgagctg gccgaccttg atgtcggcgg agataccgat cggcgcgtac ggcaggtcgg
      661 tcgcggggat cttcacgatc gcgaggtcgg tcagggtgtc cacgccgtag acccggccgg
      721 tgtactggtg gccgtccttg agctcgacgg tgagcttcga ggcgatggtg ttgctgtcga
      781 tctggaccac gtggcggttc gtgaggatcc acccggcggc gtcgaagatg accccggagc
      841 ccacgccctg ggccgggatc gagccgccga gctggtcggt cgtgacgccg gaagccgtga
      901 tccggacgac ggccgggctg accttcgccg cggcgtcgac gaccgccgac gactcgtcga
      961 tccggaccgt gtgagcgcca tcgagggacg accccggcga ggcggcgggg gcgcccgccg
     1021 gatggaggac cccggtcgac gacagcacgg cgacggtgcc accggaggcg aggaccgccg
     1081 agagcagggc cgtcgcgacg atggtgcctg gcccgggccc acgcggccgg gaccggagga
     1141 tggcgccggc accggtgccg tccccggcca gccggacacc ggcccgggct ggacggcctg
     1201 gagcggcggg gccggctcgg gctggtacga gccctccggc tccggcggag ggacggcgaa
     1261 tggctgggtc gggtcgtcca tcgctggctg ggtcgcgtcc tcgtgggtct gggccatggt
     1321 gagcgggaag cctacgatgc cgcgcccgga ttgcggttgg agtcgtcgga ggatgaagaa
     1381 tccgccacgc cctcgagggg cggcgccgcg ggaagcgtga cccggaacgt gctcccagcg
     1441 cccaggtggg tgtccaccga cacgctcccg ccgtgcatct cgacgatgct cttgacgatc
     1501 gccaggccga ggccgctgcc gctgccgcgc gcgtccgagg cgcgggcgcc gcggaagaag
     1561 cggtcgaaga tccgcggcag ctcggctgga tcgatgccga tgccggtgtc ggccaccgtg
     1621 atcgacgcgc cgccctctgg atccgagcga acgcgaacgt cgaccttgcc gccgcggggc
     1681 gtgaacttga tcgcgttccc cacgaggttg ctcaccacct gcccgatccg gaccgggtcg
     1741 tgccgaatga cgatcggctc gtccggccga tccaccgaca gcgcgacgcc gcgccggcgc
     1801 gccgtcgcgg ccgcctggtc gaccgcctgc tcgaccgacg atcggaggtc gtcgcgcc
//
LOCUS       DATDDI010000038         4251 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_375113, whole genome shotgun sequence.
ACCESSION   DATDDI010000038 DATDDI010000000
VERSION     DATDDI010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375113"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1095
                     /locus_tag="VIU37_00575"
     CDS             <1..1095
                     /locus_tag="VIU37_00575"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6012459.1"
                     /translation="PKSPEEAEIILRRMDALFHEIDGWSPEAAIIIGDHASVDFSDIL
                     RFIPDGFPAFHYVPIEGVGLKPRHADIWAKMTPVAMSEFGADQIATIYPDRPAVIYHG
                     VDTSAFYPVSEQRPITIRTRAGFAILRSKDDCKRFLGSMLTVNDNETGRSWPLWQPGR
                     VALFRHDANVPRKRWQSLFRSVAPVLARNPDVDLIYHTRTVYQGGDLEIEKSAYPLAL
                     QKRMLSTGLQDQGIPVDRPLLAAMLNASDIYVSGAAEGFGLCIAEALACGVPAVGMDY
                     SSVPEVIGKAGIAVPPAGLIDNIYSSFWAGVREDLFGEAVERLARSRRLRRELGALGP
                     IHVGALFRWDRAAEQFIGLIDAKLGKAMAA"
     gene            1092..1778
                     /locus_tag="VIU37_00580"
     CDS             1092..1778
                     /locus_tag="VIU37_00580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012460.1"
                     /translation="MTLTVSAAEVRDYLQLEPNNPTGNSTLSDGQIESNILAAQETLE
                     RATRRWFVARPAVTYTATTMLRAIVPIPGFNAFTSVTAYGSVLTVNQAVWPLPDAQNT
                     GVYTSLQFRPFRGDIHEWHLANPQWWDAALDNPFYPGNYGGGYAWTSMPNDLVVVGDG
                     GYTAGTYPFAWLLAVKQLAAFFTKQPASILAETIITPQGGVINYAQLPSTVQAFITSW
                     QAGQTVVSVG"
     gene            1899..2351
                     /locus_tag="VIU37_00585"
     CDS             1899..2351
                     /locus_tag="VIU37_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012461.1"
                     /translation="MARLVGYEALQARFHALTGVGDASLMKAFGAAAVREQKLLVHRK
                     TGMTGRSIHVASVTPKSVTIEAGFAAPFLEFGTKPHTITPQVARVLAWGGARRLTGTL
                     RVGASATHFAMIVHHPGTKPYPFMIPGAKTAIAKTGADAIVGVWNGAA"
     gene            2348..2974
                     /locus_tag="VIU37_00590"
     CDS             2348..2974
                     /locus_tag="VIU37_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012462.1"
                     /translation="MTDIAWQANTAYLAGAVVTETTGLPMWRATVAGTSAGTEPVWPT
                     AAPWTIVDGGTLTWTLNTTFRQDVHAGIVSTLNAFRSANPTLLRKVWHARPGSYTLGE
                     LPCAVLGNLSESIATANGIRQRNFDGFTVDLVDRSPDNEEADDRMNQLVDAMLDYLTA
                     AYHSASGTSIVEPIGVTDGDSGAISEGSNLYWYSNVITFRAYVAEGRT"
     gene            3148..4083
                     /locus_tag="VIU37_00595"
     CDS             3148..4083
                     /locus_tag="VIU37_00595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012463.1"
                     /translation="MPWSFQPTVDPKWTFPTADTGTLDQAIAPYRMAEDVTGVATGQL
                     FANDVPALMGPSIQGGQTPSTVGGTGKSWVWTPAYTTQDVFDTVTGEWFDDATADAWA
                     GAGGIITGWTLTYPQDLGPINVSANYRFAKSIYPATPTGSLAVDTSPVPLYMADTSLY
                     INDTAGAIGTTVIADTLYDASVQYEGNIDVKRFANGNSVRFDVANYGRGERVVTFTIN
                     VTKDAAAVAEAVKWIGASPTERFFELRTTALPFAGSGQPYSLSVRIPGYWITRAETTI
                     NSNTGFSLTGHQIVDTTLLYPFRIACINTEATLLA"
BASE COUNT          677 a         1615 c         1331 g          628 t
ORIGIN      
        1 cccaagagcc ccgaggaggc cgagatcatc ctgcgccgga tggacgccct cttccacgag
       61 atcgacggct ggtcgcccga ggccgcgatc atcatcggcg atcatgcgtc ggtcgacttc
      121 tccgacatcc tccgcttcat ccccgacggc ttcccggcct tccactacgt cccgatcgag
      181 ggtgtcggcc tgaaaccccg ccacgccgac atctgggcga agatgacgcc cgtggcgatg
      241 agcgagttcg gggccgacca gatcgccacc atctacccgg accggcccgc cgtcatctac
      301 cacggcgtcg acacgagcgc cttctacccc gtgtcggagc agcgcccgat cacgatccgg
      361 acccgcgcgg gcttcgccat cctccgctcc aaggacgact gcaagcggtt cctcgggtcg
      421 atgctgaccg tcaacgacaa cgagacgggc cgctcgtggc cgctctggca gcccggcagg
      481 gtcgcgctct tccgccacga cgcgaacgtc ccccgcaagc gatggcagtc gctcttccgc
      541 tcggtcgccc cggtgctggc ccggaacccc gacgtcgacc tcatctacca cacccggacg
      601 gtctatcagg gcggcgacct cgagatcgag aagtcggcgt acccgctggc gctccagaag
      661 cggatgctct cgaccggcct ccaggaccag ggcatccccg tcgaccggcc gctcctcgcg
      721 gcgatgctca acgcgtccga catctacgtc tcgggcgcgg ccgagggctt cggcctgtgc
      781 atcgcggagg cgctcgcctg tggcgtgccc gcggtcggca tggactactc gtcggtcccg
      841 gaggtcatcg gcaaggccgg gatcgccgtt cctcccgcgg ggctcatcga caacatctac
      901 tcgtcgttct gggcgggcgt ccgcgaggac ctcttcgggg aggccgtcga acggctggcg
      961 cggtcgcgta gactacggcg ggaactcgga gcattgggcc ccatccacgt cggggcgctc
     1021 ttccgctggg atcgcgcggc cgagcagttc atcggactca tcgacgcgaa gctcggaaag
     1081 gcgatggcgg catgacgctc accgtgtcgg cggcggaggt ccgcgactac ctccagctcg
     1141 agccgaacaa cccgaccggg aactccaccc tctccgacgg ccagatcgag tcgaacatcc
     1201 tcgccgcgca ggagacgctc gagcgggcga cccggcgctg gttcgtcgcc cgccctgccg
     1261 tgacgtacac cgcgacgacg atgctccggg ccatcgtccc gatccccggc ttcaacgcct
     1321 tcacgtccgt caccgcctac ggctcggtcc tcaccgtcaa tcaggccgtc tggccgctgc
     1381 ccgacgcgca gaacacgggc gtctacacct cgctccagtt ccgcccgttc cggggcgaca
     1441 tccacgagtg gcacctcgcg aacccccagt ggtgggacgc cgcgctcgac aacccgttct
     1501 accccggcaa ctacggcgga ggctacgcct ggacctcgat gccgaacgac ctcgtcgtcg
     1561 tgggcgacgg cggatacacc gcggggacgt atcccttcgc gtggctcctc gcggtcaagc
     1621 agctcgccgc gttcttcacg aagcagcccg cgtcgatcct cgcggagacg atcatcacgc
     1681 cccagggcgg ggtcatcaac tacgcccagc tcccgtccac ggtccaggcg ttcatcacct
     1741 cgtggcaggc gggccagacc gtcgtgagcg tcggatgagg tgcttctgtg gccgtcccgc
     1801 ccgcctcgtc cagatgccgc tcgtcggtcg ggccatgtgg ctctgccacc tccacgggcc
     1861 ggctcgggtg atcgcggtca tgcggagcct gatcgcgcat ggctaggctc gtcggctacg
     1921 aggcgctcca ggcgcggttc cacgccctga cgggggtcgg ggatgcgtcg ctcatgaagg
     1981 cgttcggggc cgccgccgtc cgcgagcaaa agctcctcgt ccaccgcaag accggcatga
     2041 ccggccggag catccacgtc gcctcggtga cgccgaagtc ggtgacgatc gaggcgggct
     2101 tcgccgcgcc gttcctcgag ttcgggacca agccgcacac gatcacgcca caggtcgccc
     2161 gcgtcctcgc gtggggcggg gcccgccgcc tgaccgggac gctccgcgtg ggcgcgtcgg
     2221 ccacccactt cgccatgatc gtccatcacc ccggcacgaa gccctaccca ttcatgatcc
     2281 ccggcgccaa gacggcgatc gccaagaccg gcgcggacgc gatcgtgggc gtctggaacg
     2341 gtgcggcatg accgacatcg cgtggcaggc caacaccgcg tacctcgccg gtgccgtcgt
     2401 gaccgagacg acgggcctcc cgatgtggcg ggcgacggtg gccgggacct cggccggaac
     2461 ggagcccgtg tggccgaccg ccgcgccgtg gacgatcgtc gatggcggca ccctgacgtg
     2521 gacgctcaac acgaccttcc gccaggacgt ccacgccggc atcgtgtcga cgctcaacgc
     2581 cttccgctcg gccaacccga cgctcctgcg gaaggtctgg cacgcccgcc ccggctcgta
     2641 cacgctgggc gagcttccgt gcgcggtcct cggcaacctg tccgagtcga tcgccacggc
     2701 caacggcatc cggcagcgca acttcgacgg cttcaccgtc gacctcgtcg accgctcgcc
     2761 ggacaatgaa gaggcggatg accggatgaa ccagctcgtg gacgcgatgc tggactacct
     2821 gaccgccgcc taccactccg cctcgggaac cagcatcgtc gagcccatcg gcgtgaccga
     2881 cggagatagc ggagccatca gcgaggggtc gaacctctac tggtactcca acgtcatcac
     2941 cttccgggcc tacgtcgcgg agggccggac ctagccgcaa gcgaacccgc ccggcccgag
     3001 tgcgagtgaa ggccgacgcg gttcctcctt actcgcagga gatcaacctc gatgcctttg
     3061 acgccactgg caggttccac gaggctgcga gccttccagc tcggcctcga aggttccttc
     3121 gatgtccaga ccgcggccac ccgacggatg ccgtggtcgt tccaaccgac cgtcgatccc
     3181 aagtggacgt tcccgaccgc cgacacgggg acgctcgacc aggccatcgc gccgtaccgc
     3241 atggccgagg acgtgaccgg cgtcgccacc ggccagctct tcgccaacga cgtgccggcc
     3301 ctcatgggcc cgtccatcca gggcggccag acgccgtcca ccgtgggcgg caccggcaag
     3361 tcgtgggtct ggacgcccgc ctacacgacc caggacgtct tcgacaccgt gaccggcgag
     3421 tggttcgacg acgcgaccgc cgacgcctgg gccggcgcgg gcgggatcat caccggctgg
     3481 acgctcacct acccccaaga cctcgggccg atcaacgtgt cggccaacta ccgcttcgcc
     3541 aagtcgatct acccggccac ccccacgggg tcgctggcgg tcgacacgag cccggtgccg
     3601 ctctacatgg cggacacctc gctctacatc aacgacacgg ccggggccat cgggaccacg
     3661 gtcatcgccg acaccctcta cgacgcctcg gtccagtacg agggcaacat cgacgtcaag
     3721 cggttcgcca acggcaactc cgtccgcttc gacgtcgcca actacggccg cggcgagcgc
     3781 gtcgtgacct tcaccatcaa tgtcacgaag gacgccgcgg cggtggccga ggccgtcaag
     3841 tggatcgggg ccagcccgac cgagcggttc ttcgagctcc ggaccacggc cctccccttc
     3901 gcgggctcgg gccagccgta ctcgctctcc gtccgcatcc ccggctactg gatcacccgc
     3961 gccgagacga cgatcaactc gaacaccggc ttctcgctca ccggccacca gatcgtcgac
     4021 acgacgctcc tgtacccgtt ccggatcgcc tgcatcaaca ccgaagccac gctgctggca
     4081 taggagaacc gatgatcgac accgctgggg gatcgaccag cgccgacgtg ggggagggcg
     4141 cgatcccgcc ctcccccgca ccaaacgtcg tccacctcgc ctgcccttgt ccgggccagc
     4201 cccacgccta cgacgtggtg acgctgcgcc cggtcgttac gaaccggatg g
//
LOCUS       DATDDI010000039         2261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_666479, whole genome shotgun sequence.
ACCESSION   DATDDI010000039 DATDDI010000000
VERSION     DATDDI010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_666479"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1193)
                     /locus_tag="VIU37_00600"
     CDS             complement(<1..1193)
                     /locus_tag="VIU37_00600"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY6012464.1"
                     /translation="MGRRLLLLCALALVAAVTAAGASARTFDEPLQAQEWWLARIGTT
                     GLAPPGPGVPISIIDSGTDPTHPEFAGRPNTTFENDQSTFGREEYHGTAVASVAAAPA
                     NGSGILGVYPTAALQVWDASPDARGITDFTAIVDIEQAAAHCPAVINLSFGSTDPDPQ
                     LQGAILKAVASGCLVVAASGNAGESGSPTTFPASWPHVFTVGATDENDKVAAFSTIGA
                     GLDVVAPGTDITAAVPFSRNGTGYDNTFAGTSFSSPIVAAAAAWVWTMRPTLTAFQLA
                     QVLRKSARDLGPPGYDTMSGYGLIDVAAALVLPTPEDDPNEPNDDISEVKPGPLFANG
                     QAPLTTVTKPSIRIAGELDSSEDPRDLYRIWVPANKVVHVSVTGPGTAAARIWGPQTV
                     GVGEGL"
     gene            1217..1678
                     /gene="folK"
                     /locus_tag="VIU37_00605"
     CDS             1217..1678
                     /gene="folK"
                     /locus_tag="VIU37_00605"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEY6012465.1"
                     /translation="MKRAYVALGSNLGDREATIRAALAALAAEPDVRVAAVSALVETD
                     PVGYVDQPRFLNGAAALDTSLAPRALLDLLLAVERRFGREREGAPAQGPRTLDLDLLR
                     YGNAEIDEPGLRVPHPRLHERAFVLGPLAVLDRSLEVPGKGDIQTLLAGLH"
     gene            1686..2054
                     /locus_tag="VIU37_00610"
     CDS             1686..2054
                     /locus_tag="VIU37_00610"
                     /inference="COORDINATES: protein motif:HMM:NF022079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2469 family protein"
                     /protein_id="HEY6012466.1"
                     /translation="MSHLDDLDEYEAELELRLKKEYQAVFSLFRFCVLTPDATYLCNR
                     LERTYAPQPAYPFIRLTLEDVWVWDKNRPTRMIPRTEILLTSGDVTIEELRGEDDEPT
                     LTPETLAERIGDIRPREDEF"
     gene            2070..>2261
                     /locus_tag="VIU37_00615"
     CDS             2070..>2261
                     /locus_tag="VIU37_00615"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF015280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEY6012467.1"
                     /translation="MLLAVDVGNTQTVFGLFDGRDLSDRWRVATEPHKSGDELGALYR
                     SFLDLVRVDGICVSSTVPQL"
BASE COUNT          316 a          813 c          802 g          330 t
ORIGIN      
        1 aggccctcgc cgacgccgac cgtctgcggg ccccagatgc gcgccgcggc cgtccccggt
       61 ccggtcaccg agacgtgcac gaccttgttc gccggtaccc agatgcggta gaggtcgcgc
      121 gggtcctcgc tcgagtcgag ctccccggcg atccggatcg acggcttcgt gaccgtcgtc
      181 agcggcgcct gcccgttcgc gaacagcggg cccggcttca cttccgagat gtcgtcgttc
      241 ggctcgttcg gatcgtcctc cggcgtcggc agcacgagcg ccgcagcaac gtcgatcagc
      301 ccgtagccgc tcatcgtgtc gtagccgggc gggccgaggt cgcgggcgct cttccgcagg
      361 acctgcgcga gctggaaggc ggtcagcgtc ggccgcatgg tccagaccca cgcagccgcc
      421 gccgccacga tcggcgacga gaagctcgtg ccggcgaacg tgttgtcgta gcccgtcccg
      481 ttgcggctga acgggacggc cgccgtgatg tccgtcccgg gcgcgacgac gtcgagcccg
      541 gcgccgatcg tcgagaacgc tgcgaccttg tcgttctcgt cggtcgcgcc gacggtgaag
      601 acgtgcggcc acgaggccgg gaacgtcgtc gggctgccgc tctcgcccgc gttcccggag
      661 gcggcgacga cgaggcagcc ggaggcgacg gccttgagaa tcgctccctg cagctgcgga
      721 tcggggtccg tgctgccgaa gctcaggttg atcaccgccg ggcagtgcgc cgcagcctgc
      781 tcgatgtcga cgatcgcggt gaaatcggtg atcccgcgcg cgtccgggct cgcgtcccag
      841 acctgcagcg cggccgtcgg gtagaccccg aggatcccgg agccgttggc gggcgccgcc
      901 gcgaccgagg cgaccgcggt gccgtggtac tcctcgcgcc cgaaggtcga ctggtcgttc
      961 tcgaaggtcg tgttcgggcg gcccgcgaac tcgggatgcg tcggatcggt gccgctgtcg
     1021 atgatcgaga tcggcacgcc gggcccgggc ggggccaggc ccgtggtccc gatgcgggcg
     1081 agccaccact cctgggcctg gaggggctcg tcgaacgtcc gcgccgaggc gcctgcggcc
     1141 gtgaccgcag ccacgagcgc aagtgcacac aggaggagga gccggcggcc cacgggtcat
     1201 ggcagggtag cgggcgatga agcgtgccta cgtcgcgctc ggctcgaacc tcggcgaccg
     1261 cgaggcgacg atccgcgccg ccctcgccgc gctcgccgcc gagccggacg tgcgggtggc
     1321 ggccgtctcg gccctggtcg agaccgaccc ggtcggctac gtcgaccagc cacgcttcct
     1381 gaacggggcc gccgccctcg acacgagcct cgcgccgcgg gccctcctcg acctcctcct
     1441 ggcggtcgag cggcgcttcg ggcgcgagcg ggagggcgcc ccggcccagg gcccgcggac
     1501 gctcgatctc gatctcctcc gctacgggaa cgccgagatc gacgagcccg ggctgcgggt
     1561 accccacccc cggctccacg agcgggcctt cgtcctcggc cccttggccg tgctggacag
     1621 gtccctcgaa gtgcctggaa agggagatat tcagaccctc ctggccgggc tacactgagt
     1681 ggcccatgag ccacctcgac gacctggacg agtacgaggc cgagctcgag ctgcggctga
     1741 agaaggagta ccaggccgtc ttctcgctct tccgcttctg cgtgctcacg ccggatgcga
     1801 cgtacctgtg caacaggctc gagcgcacgt acgcaccgca gcccgcgtac ccgttcatcc
     1861 gcctcacgct cgaggacgtg tgggtgtggg acaagaaccg cccgacgcgc atgatcccgc
     1921 gcaccgagat cctgctcacg tccggtgacg tgacgatcga ggagctgcgc ggcgaggacg
     1981 acgagccgac gctcacgccg gagacgctcg cggagcgcat cggcgacatt cgtcctcgcg
     2041 aagacgagtt ctagttagcg ttcgccgcga tgctgctcgc ggtcgacgtc ggcaacacgc
     2101 agaccgtctt cgggctcttc gacggacgcg atctgagcga tcggtggcga gtggcgacgg
     2161 agccgcacaa gagcggcgac gagctgggcg cgctctacag gagcttcctc gacctcgtac
     2221 gcgtcgacgg gatctgcgtc tcctcgaccg tcccccagct c
//
LOCUS       DATDDI010000040         2572 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_375156, whole genome shotgun sequence.
ACCESSION   DATDDI010000040 DATDDI010000000
VERSION     DATDDI010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375156"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..205
                     /locus_tag="VIU37_00620"
                     /pseudo
     CDS             1..205
                     /locus_tag="VIU37_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020808074.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            760..1188
                     /gene="rpsL"
                     /locus_tag="VIU37_00625"
     CDS             760..1188
                     /gene="rpsL"
                     /locus_tag="VIU37_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003225781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEY6012468.1"
                     /translation="MPTISQLVRHGRHPAIKKIKAPAMRKNWNALRQRQVSIPGAPQK
                     RGVCLQVRTMTPKKPNSALRKIARVRLSNQMEVTAYIPGIGHNLQEHSVVLVRGGRVK
                     DLPSVKYHIIRGTLDAAGVRDRKQGRSKYGAKASAKPGAR"
     gene            1189..1656
                     /gene="rpsG"
                     /locus_tag="VIU37_00630"
     CDS             1189..1656
                     /gene="rpsG"
                     /locus_tag="VIU37_00630"
                     /inference="COORDINATES: protein motif:HMM:TIGR01029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEY6012469.1"
                     /translation="MPRRTSIARKTKYETVPSNRTTARFSAKLMKGGKQNLAERILRQ
                     ALARAEAQANRPGLEILEAAMRNATPIIEVKPRRVGGATYQVPVEIRGDRRMSLGVRW
                     LVQAARKRNGKSMSEKLAAEFVDAMNGLGAAVKRREDTHKMAEANRAFSHFKW"
     gene            1678..>2572
                     /locus_tag="VIU37_00635"
     CDS             1678..>2572
                     /locus_tag="VIU37_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY6012470.1"
                     /translation="MARQVPLARTRNIGIIAHIDAGKTTVTERILFYTKKIYKIGEVH
                     EGAATMDWMPQEQERGITITAAATTAFWGDHRINIIDTPGHVDFTVEVERSLRVLDGA
                     VVVFDGVAGVEPQSETVWRQADRYSVPRICFINKLDRTGADFWRCVEMIVDRLGARPV
                     PIQIPIGIEDTFEGIVDLVEMKAILYRDDLGSKIDVVEIPEPLRAEAARHREKLVEAV
                     AEADDALTHKYLEGEELTIEEIRHGLRLGTLQSKFVPVLAGSALKNKGVQPMLDAVVD
                     YLPSPLDVPPTIGLRPGTDQEL"
BASE COUNT          462 a          918 c          856 g          336 t
ORIGIN      
        1 ggagggcggc gagccggcga cggctcagac cgtcctgctc ggggtgacca aggcgtccct
       61 caacacctcc tcgttcctcg ccgcggcctc cttccaggag acgacccggg tgctcaccga
      121 ggcggccatc aacggcgcca aggatcacct gatcgggctc aaggagaacg tcatcatcgg
      181 caagctcatc ccggccggga ccggggcgcc ggccaacgtc gcggcccgca aggagcgcga
      241 gcgtcgggcg gccctcgagg ccctcgccgg cgaggcgctc gacgacctcg ggacggagta
      301 caacccgttc ctcgaggagg gtgaggcgcg tggggccgac gacgacgcgg ccggtctcgc
      361 cctggccgcc acgatcgccg gttccggcgg tgcggcggac gacgacgacg ccggcaaccc
      421 gttcctcggc gacgacgccg aggacggcga gaccgccgac aacccgttcc tggccgatgc
      481 caaggctcgc tcggagacga gcgaagaagg ctaggccgcg accgttttcg aggccctcca
      541 gtggcccgcc gagtgtttga cacgctcgtc gggccactgc tacactccgc gctcgtggcc
      601 tcgggagggg tccgcctttg gcgcgtcgcc gaggaccatc ttcgagcccc agaaccggtc
      661 tcatcgccca ccaatccagg cgtgcgacct cgagtgaccg gccccagtcg atgactcacc
      721 tcgtcgacat ctgaccgact gaaaaggaga agcgtcttcg tgccgacgat cagccagctc
      781 gtgcgccacg gccgccaccc cgcgatcaag aagatcaagg ctccggccat gcgcaagaac
      841 tggaacgcgc tgcggcagcg ccaggtctcg atccccggcg ccccccagaa gcggggcgtg
      901 tgcctccagg tccggaccat gacgcccaag aagccgaact cggccctgcg caagatcgcg
      961 cgcgtgcgcc tgtccaacca gatggaggtc acggcctaca tcccgggcat cggccacaac
     1021 ctccaggagc actcggtcgt gctcgtccgt ggcggccgcg tcaaggacct cccgtcggtc
     1081 aagtaccaca tcatccgcgg cacgctcgat gccgccggtg tgcgagaccg gaagcagggc
     1141 cgcagcaagt acggcgccaa ggcgtcggcc aagccgggag cccgctagat gccgcgccga
     1201 acgagcatcg ctcgcaagac caagtacgag acggtcccgt ccaatcgcac gaccgcgcgc
     1261 ttctccgcca agctgatgaa gggcggcaag cagaacctgg ccgagcggat cctgcgccag
     1321 gcgctggccc gggccgaggc ccaggcgaac cgcccggggc tcgagatcct cgaggccgcg
     1381 atgcgcaacg ccacgccgat catcgaggtc aagccgcggc gcgtcggtgg cgcgacctac
     1441 caggtcccgg tcgagatccg gggagatcgc cgcatgtcgc tcggcgtccg ctggctcgtc
     1501 caggccgccc ggaagcgcaa cggcaagtcg atgagcgaga agctggcggc cgagttcgtc
     1561 gatgccatga acgggctcgg cgcggcggtc aagcgtcgag aagacacgca caagatggcg
     1621 gaggccaacc gggccttcag ccatttcaag tggtagatcc gggagcatag gcacaccgtg
     1681 gcacgacagg ttccgctcgc ccgcacccgg aacattggaa tcatcgcgca catcgacgcc
     1741 ggcaagacga ccgtcaccga gcggatcctc ttctacacga agaagatcta caagatcggc
     1801 gaggtccacg agggcgccgc gacgatggac tggatgcccc aggaacaaga gcggggcatc
     1861 accatcaccg cggcggcaac gaccgcgttc tggggcgacc atcgtatcaa catcatcgat
     1921 acgcccgggc acgtggactt cacggtcgag gtcgagcgca gccttcgcgt gctcgacggc
     1981 gcggtcgtcg tcttcgacgg cgtggccggc gtcgagcccc agtccgagac cgtctggcgg
     2041 caggcggacc gctactcggt gccgcgcatc tgcttcatca acaagctcga ccggacgggc
     2101 gccgatttct ggcgctgcgt cgagatgatc gtcgaccgcc tgggcgcccg gcccgtgccg
     2161 atccagatcc cgatcgggat cgaggacacg ttcgagggca tcgtcgacct cgtcgagatg
     2221 aaggcgatcc tctaccgcga cgacctgggc agcaagatcg acgtcgtcga gatccccgag
     2281 cccctccggg ccgaggccgc ccggcatcgc gagaagctcg tcgaggccgt cgccgaggcc
     2341 gacgacgccc tgacccacaa gtacctcgag ggcgaggagc tgacgatcga ggagatccgt
     2401 cacggcctcc ggctgggcac gctccagtcg aagttcgtgc cggtcctcgc gggctcggcc
     2461 ctcaagaaca agggcgtcca gcccatgctc gacgcggtcg tcgattacct gccgtcgccg
     2521 ctcgacgtgc cgccgaccat cggcctccgg ccgggcaccg accaggagct cg
//
LOCUS       DATDDI010000041         1840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_42174, whole genome shotgun sequence.
ACCESSION   DATDDI010000041 DATDDI010000000
VERSION     DATDDI010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42174"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VIU37_00640"
     CDS             complement(<1..508)
                     /locus_tag="VIU37_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012471.1"
                     /translation="MIEMKTEQETSGSSIPASHLERPQATRWEFPVLRAQRGGHAERL
                     AVVVGGLHPAIIFVVVMLVGLAAVAALSIGCGFLVTKVLEPAWGIGAADERVNVWLAT
                     HRTSARTNASLIGSIVAGGVVLPIIAGSIALVCAVLRKWRIAAFVVFALAVESASYRA
                     TTLVVHSHR"
     gene            607..1548
                     /locus_tag="VIU37_00645"
     CDS             607..1548
                     /locus_tag="VIU37_00645"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6012472.1"
                     /translation="MPFLLLLALALTAGLAVGLVAWRYPRIARPSPAPTLDTARKVGK
                     AVGKHPRLHAFLDARLDPAAATGLALTIAMAFAIGGGLLFGVLAYLMRTNADLIAIDN
                     GVAKWGNRHATATSMHALNLVTQLGGIYTVIALCLTLAVAETIRERTVWVTTFIIAVM
                     GGEELLTATVKQLADRVRPTFNPAAATLGPSFPSGHSATAAAFYATAALLLGRRRGRP
                     GRAAFTGLAAAIAVAVAASRVLLDVHWLSDVIAGLSLGWAWFAVCAIAFGGRILRFGA
                     AAEIAAHVADATEVAEAGSDNPVRPPLVSARSSNGSK"
     gene            complement(1619..>1840)
                     /locus_tag="VIU37_00650"
     CDS             complement(1619..>1840)
                     /locus_tag="VIU37_00650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012473.1"
                     /translation="RLRLWSEHLELPVAEIPTDTTKAIDEIWKPVSAEQLRRREEGQP
                     LTHRLVRLPNLSRRSGRALGPISGLLVDG"
BASE COUNT          296 a          670 c          601 g          273 t
ORIGIN      
        1 gtcgatgcga gtgaacgacg agtgtcgtcg cgcggtacga cgccgactcg acggccagcg
       61 cgaacacgac gaacgccgcg atccgccact tccgcaacac cgcacaaacg agcgcgattg
      121 agccggcgat gatcggcagg accacgcctc cggcgacgat cgagccgatc aacgaggcat
      181 tcgtccgcgc cgatgtccgg tgcgtggcca gccagacgtt cacgcgctcg tcggcggcac
      241 cgatgcccca ggcaggctcc agcactttcg tgacgagaaa cccacatccg atcgacaacg
      301 ctgcgactgc cgccagaccg accagcatca cgacaacgaa gatgatcgcc gggtgcagcc
      361 cgccaaccac gacggccaac cgttccgcgt gcccacctcg ttgcgcacgg aggacgggaa
      421 actcccagcg ggtagcctgc ggccgctcca ggtggctcgc gggtatcgaa gagcccgacg
      481 tttcctgctc cgttttcatc tcgatcatcg agggcacacg cccagcccgg agtctccacc
      541 gttccggtcc aagaaacctc acggcccctg gtcggccgga tgctcgctag cggtacgaag
      601 cccgagatgc cgttcctgct cctacttgca ctcgccctga cagccggcct ggcggtcgga
      661 ctggtcgctt ggcgctaccc gcggatcgcg agaccgtcgc ccgcaccgac actcgacact
      721 gcccgcaagg tcggcaaggc ggtcggcaaa catccgaggc tgcacgcctt cctggatgcg
      781 cggctcgacc cggcggccgc gacgggtctt gcgctgacca tcgccatggc cttcgcgatc
      841 ggcggcggcc tgctattcgg agtgctcgcc tacctgatgc gtacaaacgc ggatctgatc
      901 gcgatcgaca acggcgtggc gaaatgggga aaccgccacg caacggcgac gtcgatgcac
      961 gccctcaacc tcgtcaccca actcggaggc atctacaccg tgatcgcgct ttgcctcacg
     1021 ctcgccgtcg cagaaacgat cagggaacgg accgtctggg tgacgacatt catcatcgcc
     1081 gtcatgggcg gtgaggagct actcaccgcg accgtcaagc agctagccga tcgtgtacgc
     1141 ccaaccttta atcctgctgc ggcgacgctc gggccgtcct tccccagcgg ccactcggcg
     1201 acagccgccg ccttctacgc cacggcggcg cttctcctcg gccggcggcg gggccgaccc
     1261 gggcgagcag cgttcacagg tctcgcggcg gcgatcgccg tcgcggtcgc cgcgagccgc
     1321 gttctgctcg acgtgcattg gctctccgac gtgatcgccg gactctcgct cggctgggcc
     1381 tggttcgccg tctgcgcaat cgccttcggc gggcggatcc tccgcttcgg cgccgccgcc
     1441 gagatagccg cccacgtcgc cgacgcgacc gaggtcgccg aggccggctc cgacaaccca
     1501 gtacgcccac cgctggtctc cgcgcggtca tcgaacggct cgaagtaacc gggtcggcgc
     1561 gtccacggcc gagcggggga gcctgcgcgc ccgcggctgc gccgaggacg gctgaggtct
     1621 agccgtcgac caggaggccg ctgatcgggc cgagggcccg gccggagcgg cgggagaggt
     1681 tcggcagccg gacgaggcgg tgggtgagcg gctggccctc ctcgcgccgt cggagctgct
     1741 cggcgctgac gggcttccag atctcgtcga tcgccttcgt ggtgtccgtc gggatctcgg
     1801 cgaccggcag ctcgagatgc tcggaccaga gccggagccg
//
LOCUS       DATDDI010000042         1595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_271104, whole genome shotgun sequence.
ACCESSION   DATDDI010000042 DATDDI010000000
VERSION     DATDDI010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271104"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..1316)
                     /gene="hisS"
                     /locus_tag="VIU37_00655"
     CDS             complement(3..1316)
                     /gene="hisS"
                     /locus_tag="VIU37_00655"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEY6012474.1"
                     /translation="MPAYRAPRGTRDLLPAETPAWTRLERLAADLAARYGYRRIETPL
                     FEQSEVFERGIGAVTDVVEKELFRIAPRTDEAESWALRPEPTAGIVRAYVQHGMQTWP
                     QPVKLSELGPMFRYDRPQAGRYRQFWQFDVEAIGDPGPAVDAEIIELGIRYYHDAGLE
                     GVEVLLNSIGDPACRPAYVAELTAYFVAHREALPELERARLDRNPLRLLDSKDPAMAA
                     LNAMAPRITDRLCAPCAEHFAAVRAHLDALAIPYRLEPGLVRGLDYYTRTAFEFYIAG
                     REGQQQALGGGGRYDGLVELLGGRPTPAIGFGIGLDRLVLALAETGVTEPAEGAPVAV
                     VVGADPDDTSPRLRIATDLRAAGLAARAELGRRKLGKQLEAAARDGAHFAVIVGDELA
                     DGGVGLRDLPAGTQKVVPVADLAREIGRAHGAHRHGAADGGAGSA"
     gene            complement(1328..>1595)
                     /locus_tag="VIU37_00660"
     CDS             complement(1328..>1595)
                     /locus_tag="VIU37_00660"
                     /inference="COORDINATES: protein motif:HMM:NF024687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY6012475.1"
                     /translation="VEWDAAPTQTYPIAIRVEAYDRTGLLSDISQVVAENKVNILAAQ
                     VAVTSDHTAVVTATLQVASVSQLAKVMSRIETLKDVITVQRDLG"
BASE COUNT          212 a          570 c          593 g          220 t
ORIGIN      
        1 cgtcaggcgg accctgcccc accgtcggcg gcaccatggc gatgtgcgcc gtgcgcgcgc
       61 ccgatctcgc gggcgaggtc ggcaaccggc accaccttct gggtcccggc cggcaggtcg
      121 cgcagcccga cgccaccgtc cgccagctcg tcgccgacga tgaccgcgaa gtgcgccccg
      181 tcgcgtgcgg ccgcctcgag ctgcttgccg agcttgcggc ggcccagctc cgcgcgggct
      241 gccaggcccg cggcccgcag gtcggtcgcg atccgcaggc gagggctcgt gtcgtcggga
      301 tcggcgccga cgaccacggc gaccggggcg ccctcggccg gctcggtgac gccggtctcg
      361 gccagcgcca ggaccagccg gtcgagtccg atgccgaagc cgatggccgg cgtcggccgg
      421 ccgccgagca gctcgaccag cccgtcgtag cgaccgccac cgccgagtgc ctgctgctgc
      481 ccctcgcgcc cggcgatgta gaactcgaac gcggtccggg tgtagtagtc gaggccgcga
      541 acgagaccgg gttcgagccg gtacgggatc gcgagggcat cgagatgcgc ccgcaccgcc
      601 gcgaagtgct cggcgcacgg cgcacacagc cggtcggtga tccgtggcgc catggcgttg
      661 agggccgcca tggccggatc cttcgaatcg aggaggcgca gggggttgcg gtccaggcgg
      721 gcgcgctcca gctcgggcag ggcctcgcga tgggcaacga agtaggccgt cagctcggcc
      781 acgtaggctg ggcggcaggc gggatcgccg atcgagttga gcaggacctc gaccccctcg
      841 agccccgcgt cgtggtagta gcgaatgccg agctcgatga tctcggcgtc cacggccggg
      901 ccggggtcgc cgatcgcctc gacgtcgaac tgccagaact ggcgatagcg acccgcctgc
      961 ggccggtcgt agcggaacat cggaccgagc tcggacagct tcaccggctg cggccaggtc
     1021 tgcatcccgt gctggacgta ggcgcggacg atcccggcgg tcggctcggg ccggagtgcc
     1081 caggattcgg cctcgtcggt ccgcggcgcg atccggaaga gctccttctc gaccacgtcg
     1141 gtgaccgcgc cgatcccccg ctcgaagacc tcggactgct cgaacagcgg cgtctcgatc
     1201 cggcgatagc cgtagcgcgc cgcgaggtcg gcggcgagcc gctcgagccg cgtccaggcg
     1261 ggcgtctctg cgggcaggag gtcgcgcgtg ccgcgcggag ctcggtaggc gggcatcctc
     1321 ggcgggctca gccgaggtcg cgctggacgg tgatcacgtc cttgagggtc tcgatccggc
     1381 tcatgacctt ggccagctgg gagaccgagg cgacctggag cgtggccgtc accaccgccg
     1441 tgtgatccga cgtgaccgcc acctgcgccg ccaggatgtt gaccttgttc tcggccacga
     1501 cctggctgat gtcactgagc aggccggtcc ggtcgtacgc ctcgacgcgg atcgcgatcg
     1561 ggtacgtctg ggtcggggcg gcgtcccact cgacc
//
LOCUS       DATDDI010000043         1660 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_125460, whole genome shotgun sequence.
ACCESSION   DATDDI010000043 DATDDI010000000
VERSION     DATDDI010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125460"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /gene="fabG"
                     /locus_tag="VIU37_00665"
     CDS             <1..660
                     /gene="fabG"
                     /locus_tag="VIU37_00665"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEY6012476.1"
                     /translation="ADVAFSYRGNATAAAETAAAVEALGRRAIAIQADVRDPAAADVL
                     VKQVLEALGKVDILVNNAGITRDDLIMRMSDEAWRDVLETNLFGAFYMIKAVTRPMLK
                     ARSGRIVNITSVSGQAGQTGQANYSSAKAGLIGLTKATARELASRSITVNAVAPGFVL
                     TELTKDLPEALMSEITARTPLGRFGTTEEVASAVAFLASDDAAYITGQVLAVDGGLVM
                     M"
     gene            863..1594
                     /locus_tag="VIU37_00670"
     CDS             863..1594
                     /locus_tag="VIU37_00670"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY6012477.1"
                     /translation="MGEGRDERELVRRCREGSEAAYAELVRSHRPRLYLLAYRLLGDR
                     ETAEDVVQETFLAAFRSIEKVEPRPSLSPWLNTIVLRTAGRAASRRRSRPGPSLDQSV
                     RHHPGSEALAAPSLGEGMIDPDPSGDPHAAAEAAELRRDLAAALIELPFKYRAAVVLR
                     HVMGLDYAEAALEMDVPLNTFKSHLLRGTRMLREALAGRLEPPAGATKPRNGANVPAD
                     VHSLGSGNGRRPGELVVESEQPVRR"
BASE COUNT          266 a          588 c          566 g          240 t
ORIGIN      
        1 gccgacgtgg cgttcagcta ccgcggcaac gcgaccgccg ccgcggagac cgccgcggcc
       61 gtcgaggcgc tcggccggcg tgccatcgcg atccaggccg acgtcaggga tccggccgcc
      121 gcggacgtcc tggtcaagca ggtcctcgag gcgctcggca aggtcgacat cctcgtcaac
      181 aacgccggga tcacccgcga cgacctgatc atgcggatga gcgacgaagc ctggcgggac
      241 gtcctcgaga ccaacctgtt cggggccttc tacatgatca aggcggtgac gcgcccgatg
      301 ctcaaggccc ggagcggccg gatcgtcaat atcacgtcgg tctccggcca ggccggccag
      361 accggccagg ccaactactc ctcggccaag gccgggctca tcgggctcac gaaggcgacc
      421 gcgcgcgagc tcgccagtcg gtcgatcacc gtcaacgcgg tggcccccgg gttcgtcctg
      481 accgagctga ccaaggacct cccggaggcc ctcatgagcg agatcacggc gcgcacgccc
      541 ctcggtcgct tcgggacgac cgaggaggtc gccagtgccg tcgccttcct ggccagcgac
      601 gatgccgcct acatcaccgg gcaggtcctc gccgtcgacg gcggcctggt gatgatgtag
      661 gaacccgcga gcggagcgcg gcgtcctttt cagaagcctc tcatcggcgt gttccgatga
      721 tgggcggcca cgctcacctg gcgatcatcg ttcgctcacc gatgcaacac ccgggacgat
      781 cgtgcgggtg gccagtacac aaaccatgtg tcagactgcc tccgagtgcg tgactctcgg
      841 ctggtagccg ttcggaggac tggtgggaga aggcagggac gagcgcgaac tcgttcgacg
      901 gtgcagggag ggctccgagg cggcgtacgc cgagctcgtg agaagtcacc gccctcgcct
      961 ctatctcctt gcctaccgcc tcctgggcga ccgtgagacg gctgaggacg tggtccagga
     1021 gacattcctc gcggcattcc gctcgatcga gaaggtcgag ccgcgcccgt cgctgagccc
     1081 gtggctcaac acgatcgtgc tccgaacggc gggtcgtgcc gcctcacgcc ggcgctcgcg
     1141 gccgggcccg tcgctcgatc agtcggtccg gcatcacccg ggatccgagg ccctcgcggc
     1201 accgagcctc ggcgaaggca tgatcgaccc ggacccgtcg ggcgacccgc atgccgccgc
     1261 cgaggccgcg gagctgcggc gcgacctcgc ggcggctctg atcgagctcc cgttcaagta
     1321 ccgcgccgcg gtcgtcctgc gccacgtcat gggcctcgac tacgcggaag cggcgctcga
     1381 gatggacgta ccgctcaaca cgttcaagag ccacctgctc cgaggaacgc ggatgcttcg
     1441 cgaggcgctg gcgggtcggc tcgaaccgcc agcgggggcg acgaagccca ggaatggcgc
     1501 gaacgtgccc gcggacgtgc acagcctcgg ttccgggaat ggccggcgac ccggcgaact
     1561 ggtcgtcgaa tcggagcagc ccgtcaggcg ctgactccgg tctgatcgtg ctcgccgcga
     1621 tcaccgggcg ccgttccgaa aggcgcctgc aacctttcga
//
LOCUS       DATDDI010000044         1764 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_354324, whole genome shotgun sequence.
ACCESSION   DATDDI010000044 DATDDI010000000
VERSION     DATDDI010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354324"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..1156)
                     /locus_tag="VIU37_00675"
     CDS             complement(35..1156)
                     /locus_tag="VIU37_00675"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012478.1"
                     /translation="MPAAAASETDLIATPDAAPLDPAAASPEQTPAPVDPVRRNDKPV
                     DPADLAIVVDHATMQFNGLTALDDVSLAVARGTIVGVVGPSGAGKTTLIRLLTGTLGA
                     TGGSVEVLGQNPRRFSRRTRQRLGYMPQLFTLYPDLSAAENVDFVASLYGLVWFRRWR
                     RVREVLRFVGLWDARRRRASDLSGGMQRRLELACALVHEPAILFLDEPTAGVDPILRE
                     RIWGELHRLRDAGRTLLVTTQYLGEAEECDVVALIAEGRLIAHATPDQMRKDAMGGEL
                     IDVDAGAGVDLTVLQGLPAVRGIRRLNGDGVLRITVDDAGTATPLVVDAIGRAGGQVR
                     STSEARPSFDEVFAELVDRDRRERARAADEAAAADREAA"
     gene            1451..1624
                     /locus_tag="VIU37_00680"
     CDS             1451..1624
                     /locus_tag="VIU37_00680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012479.1"
                     /translation="MPRQAWTDKRERQYEHIKESYEDRGVGEDEAEERAARTVNKERR
                     EHGETKDQRARRS"
BASE COUNT          257 a          619 c          660 g          228 t
ORIGIN      
        1 aaggcgagga gccggatgag gacctggagc aggatcacgc ggcctcgcgg tccgcagccg
       61 ccgcttcgtc cgccgcgcga gcccgctccc gccgatcgcg atcgacgagc tccgcaaaga
      121 cctcgtcgaa gctcggtcgt gcctcgctgg tggaacggac ctggccgccg gcgcgaccga
      181 tcgcgtcgac cacgaggggc gtggccgtgc ccgcgtcgtc gaccgtgatc cgcaggaccc
      241 cgtcgccgtt cagccggcgg atgccccgga cggcagggag gccctgcagg accgtcaggt
      301 cgacccctgc gccggcgtcg acgtcgatga gctcgccgcc catcgcgtcc ttgcgcatct
      361 ggtcgggcgt ggcgtgcgcg atcagccggc cttccgcgat gagggcgacc acgtcgcact
      421 cttcggcctc gccgaggtat tgcgtggtca cgagcagcgt ccggccggcg tcgcgaagcc
      481 ggtggagctc gccccagatc cgttctcgca ggatcggatc gacaccggcg gtcggttcgt
      541 cgaggaagag gatcgccggc tcgtggacga gggcgcaggc gagctcgaga cgccgctgca
      601 tcccgcccga caggtcggat gcgcgacgcc ggcgggcatc ccacagcccg acgaagcgca
      661 gcacctcgcg gacgcgccgc cagcggcgga accagacgag cccgtacagg ctggcgacga
      721 agtcgacgtt ctcggcggcc gacaggtccg ggtacagcgt gaacagctgc ggcatgtagc
      781 cgaggcgctg acgagtccgc cggctgaacc ggcgtggatt ctggccgagc acctccacgc
      841 tgccgccggt tgcgcccagc gtcccggtca gcagtcggat cagcgtcgtc ttgccggcgc
      901 ccgacggtcc gaccacgccg acgatcgtgc cgcgcgccac ggcgagactc acgtcgtcga
      961 gcgccgtcag gccgttgaat tgcatcgtcg cgtggtccac cacgatcgcg aggtcggccg
     1021 ggtcgaccgg cttgtcgttg cgccggacag ggtccactgg cgccggggtc tgctcggggg
     1081 aagccgcggc cgggtcgagt ggcgcggcgt ccggcgtggc gatgaggtcg gtctcactcg
     1141 cggcggccgc cggcatgccg gatcccgtct cgggagcggt ggcgggcgac ggagccggtc
     1201 cggggccgtg cgtgacgtca tgggccatgt catcagaccg tgggccgagg ccctccgctg
     1261 tgtgcatcgc gtgatcctcc atgcctcggc ccatccgcga cgtgacagga gacggtctcg
     1321 gcattgcagt cgtgcatgac cgggccgact gatacgcgcc tgtgagcggc tgcccgcgcg
     1381 ggacgatgcg gagcagtcgc gatcgcgcgg aggctggggg cgagccacac ccgagcacgg
     1441 aggactctcg atgccacgcc aagcctggac cgacaagcgc gaacgtcagt acgagcacat
     1501 caaggagtcg tacgaggacc gcggagtagg cgaggacgaa gccgaggagc gcgcggcacg
     1561 caccgtcaac aaggagcggc gcgagcacgg cgaaaccaag gaccagcgcg cccgcaggtc
     1621 gtgacccgcg cggacccggt gaccgctccg ccggcggagc gcccggtggt ggcggccgcg
     1681 gcggccgaag ccggtgccgt cgacctggcg gcccttcgtg cagcggccct cggctgccag
     1741 gcctgcgatc tctgggcgcg tgcc
//
LOCUS       DATDDI010000045         3802 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_396088, whole genome shotgun sequence.
ACCESSION   DATDDI010000045 DATDDI010000000
VERSION     DATDDI010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3802
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396088"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(177..1601)
                     /locus_tag="VIU37_00685"
     CDS             complement(177..1601)
                     /locus_tag="VIU37_00685"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY6012480.1"
                     /translation="MTDRANLLARSMDLAAAYLDSLESRRVGGPVDLEALRTALGGAL
                     PDGPTDPFEVVEGLAAAADPGLVASAGPRYFGFVVGGSLPAALGADWLASAWDQNAGL
                     YVLSPAAAVAEEVAAAWLVELLGLPEGTSVGFVTGATMANFTALAAARHGVLARAGWD
                     VERLGLQGAPPVTVVTHAGTHVTVYASLQMLGLGREGEHVRKVASDGQGRMRPDALRE
                     ALATIDGPVIVCTQAGNVNTGAFDPFSELVPIAHERGAWVHVDGAFGIWAAAVPSMRH
                     LMRGHEAADSWSTDAHKWLNVPYDSGLVFVRDASTHHGSMALGAEYYIETAGAERDPY
                     NWTPESSRRARGFAVLAALRSLGRSGLVDLIERDCAHARRMAERLSAGPRVSILNDVV
                     LNQVVVRFEGPAGDADGSAGDARTRAVIEAVQRDGTCWLGGTSWAGRAAMRVSVSGWQ
                     TTTEDIERSADAILRCLEAVDHAG"
     gene            1694..2083
                     /locus_tag="VIU37_00690"
     CDS             1694..2083
                     /locus_tag="VIU37_00690"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY6012481.1"
                     /translation="MDHTAFKAWLDRYVDAWRLGDPTAIGDLFSPDVRYAFDPFGEAV
                     VGRPAVVAAWLTDPDEPGSWEADYEVLAVDGDVCVAHGRTRYLTDDRSAIDREFANIF
                     VCRFDAEGRCREFTEWYNRRRTEAPPD"
     gene            complement(2084..3037)
                     /locus_tag="VIU37_00695"
     CDS             complement(2084..3037)
                     /locus_tag="VIU37_00695"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY6012482.1"
                     /translation="MIETTISPPAGSIAPGARRYRVICNPNAGAKRRLPTEPDLMDRL
                     RDALGRHRLAADLVATEDEEAAVAAVREAIGSGIDVVVAAGGDGTVGTVANELIGSSA
                     CLGILPMGTVMNVARSLGIPRDLDEAVAALARSRAVEIDVGEVAGRPFYENASVGLNA
                     AMFREADHFGRPGWVSVLRTIWVAIRYRPARITVHLDDEVVRTRALMVAVANGPYTGV
                     GMTVAPDARLDDGRFDVRVFRGFSKWQLLRHLGAIAFGRHRYAPSVSTYRSARVRVTS
                     ARPLPARADRRDLGTTPVEFVVRPRALRVLVPGPVATLREP"
     gene            complement(3034..>3802)
                     /locus_tag="VIU37_00700"
     CDS             complement(3034..>3802)
                     /locus_tag="VIU37_00700"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6012483.1"
                     /translation="DRHDPGQPVRGADPPSHPRSMAAAQDQRPSVAVLPSRVAVARGR
                     QASAVAWAGLAGFAASFVLVRARLSDAFDLAVTIKLQRGRAPWIERLMRLASWPGFPP
                     QSRVIPASIALALAAARLRLEAAGFLAAWGTAAIATLAKALMDRPRPVAGTDLRVVAA
                     PLGGSSFPSGHVITYVGIYGYSAYLVYSLVPSPPLRRAGVAGLVGLICLVGPSRIHQG
                     HHWFTDVVASYLLGVSYLIGVASLYRRAKAGASGLRP"
BASE COUNT          570 a         1398 c         1371 g          463 t
ORIGIN      
        1 gagcctggcg atctcctcgc tcgtcatgga gcctggagcg gtcgtgatgc tcatggatca
       61 cctcgggacg ggcgcggctc ggccgcggac ctcatcgaat ggcggacgaa ctacggcgag
      121 acgccgtttg ctggtgcgcc attgaagcac accgaacgcc gacgcggcgg cgcgttctac
      181 cccgcgtgat cgaccgcctc gagacagcgc aggatggcgt ccgccgatcg ctcgatgtcc
      241 tcggtggtcg tctgccaacc cgagaccgag acgcgcatcg ccgcccggcc cgcccaggag
      301 gtgccgccga gccagcaggt cccgtcgcgc tggacggctt cgatcacggc ccgggtcctg
      361 gcgtccccgg ccgagccgtc ggcgtcgccg gcgggaccct cgaagcggac cacgacctgg
      421 ttgaggacga cgtcgttgag gatcgacacg cgcggaccgg ccgacagccg ctccgccatc
      481 cggcgggcgt gggcacagtc gcgctcgatg agatcgacca gaccggaccg cccgagcgac
      541 cggagggccg ccaggacggc gaagccacgc gcccgacgtg acgattcggg cgtccagttg
      601 tacgggtcgc gttcggcgcc ggccgtctcg atgtagtact cggcgccgag cgccatggag
      661 ccgtggtggg tcgacgcgtc gcgcacgaag acgagccccg agtcatacgg cacgttcagc
      721 cacttgtgcg cgtcggtcga ccacgaatcc gcggcctcgt ggcctcgcat caggtggcgc
      781 atcgacggga ccgccgctgc ccagatcccg aaggcaccgt cgacgtggac ccaggcccca
      841 cgctcgtggg cgatcgggac cagctcggag aacgggtcga acgcgccggt gttcacgttg
      901 ccggcctgcg tgcagacgat caccgggccg tcgattgtgg cgagtgcctc gcggagcgcg
      961 tccgggcgca tccgtccctg gccgtcggag gcgaccttgc ggacgtgctc cccttcccgt
     1021 cccagcccca gcatctggag cgaggcgtag accgtcacgt gggtgcccgc gtgggtcacg
     1081 acggtgaccg gcggagcgcc ctggagcccc agccgctcga cgtcccaacc ggcgcgggcc
     1141 agcaccccgt gccgggcggc ggccagggcg gtgaagttgg ccatcgtggc gccggtcacg
     1201 aagccgacgc tggtcccctc gggaaggccg agcagctcga ccagccaggc ggcggcgacc
     1261 tcctcggcga cggcggccgc gggcgagagc acgtacaacc ccgcgttctg gtcccaggcg
     1321 gacgcgagcc agtcggcgcc gagggcggcc ggcaggctgc cgccgacgac gaacccgaag
     1381 tagcgcggtc cggcgctggc cacgaggccc gggtccgccg cggcggccag gccctcgacc
     1441 acctcgaacg gatccgtcgg gccgtccggc agcgccccgc cgagcgccgt ccggagcgcc
     1501 tccaggtcga ccgggccgcc gacgcgcctg ctctcgagcg aatcgaggta ggccgccgcc
     1561 aggtccatgg agcgggccag gagattcgcg cgatccgtca cggctgccac ctctcgcact
     1621 cgaccggccg ggacgcgacc gttctggacg ctgatgctac cgtgaccgca cgcgcatcga
     1681 cgaggaggct gcgatggatc acaccgcgtt caaggcctgg ctcgaccgtt acgtcgatgc
     1741 ctggcgcctg ggcgacccga ccgccatcgg cgacctcttc agcccggacg tccggtacgc
     1801 attcgatccg ttcggcgagg cggtcgtcgg ccgcccggcc gtcgtcgccg catggctcac
     1861 cgatccggac gagccgggat cgtgggaggc cgactacgag gtcctggccg tcgacggcga
     1921 cgtctgcgtg gcccacggcc ggacccgcta cctgaccgac gaccgctcgg cgatcgaccg
     1981 cgaattcgcc aacatcttcg tctgccgctt cgacgcggag ggccgctgcc gcgagttcac
     2041 ggagtggtac aaccggcggc gcacggaggc cccgcccgac tgatcagggc tcccgaagcg
     2101 tggcgaccgg accggggacg agcacgcgca acgctcgcgg acggaccacg aactcgaccg
     2161 gcgtcgtgcc gaggtcgcga cggtcggccc tcgccggcag tggccgggcg ctggtcaccc
     2221 gcacgcgggc cgagcgatag gtcgacacgc tcggcgcata gcggtgccgc ccgaacgcga
     2281 tcgcgccgag gtgccgcagg agctgccatt tggagaagcc gcggaagacc cggacgtcga
     2341 accggccatc gtcgagccgc gcgtcgggcg ccacggtcat gcccacgccc gtgtacggcc
     2401 cgttggccac cgccaccatc aaggcccgcg tccgcaccac ctcgtcgtcg aggtgaacgg
     2461 tgatccgtgc cggccgatag cggatcgcga cccagatcgt gcggaggacc gagacccagc
     2521 cgggacggcc gaagtggtcc gcttcccgga acatcgccgc gttgagaccg accgacgcgt
     2581 tctcgtagaa gggacgtccg gcgacctcgc cgacgtcgat ctcgaccgcc cgcgaccgcg
     2641 ccagggccgc gacggcctcg tcgaggtcgc gagggatgcc caacgaccgc gcgacgttca
     2701 tcacggtccc catcggcagg atcccgaggc acgccgagct cccgatcagc tcgttggcga
     2761 ccgtgcccac cgtgccgtcg ccgccggcgg cgacgaccac atcgatcccc gacccgatcg
     2821 cctcgcgcac cgccgcgacc gccgcctcct cgtcctcggt cgccacgagg tcggcggcca
     2881 ggcgatgtcg gccgagcgcg tcgcgcaggc gatccatgag gtccggctcc gtcgggaggc
     2941 gacgcttcgc accggcgttc gggttgcaga tcacccgata ccgccgagcg cccggtgcga
     3001 tgctgccggc aggcggcgag atcgtcgtct cgatcatggg cgcaacccac tcgccccggc
     3061 cttggcccgg cggtagagcg acgcgacccc gatgagatag ctgacgccga gcaggtacga
     3121 ggccacgacg tcggtgaacc agtgatggcc ctgatggatg cggctcggcc cgacgaggca
     3181 gatgaggccc accaggccgg ccaccccggc acgtcgcagg ggtgggctgg ggacgagact
     3241 gtagacgagg taggccgaat agccgtagat gccgacgtag gtgatgacgt gcccgctcgg
     3301 aaagctcgag ccaccgagcg gcgcggcgac gactcgcagg tccgtgccgg cgacgggccg
     3361 cgggcggtcc atcagcgcct tggcgagcgt cgcgatcgcc gccgtccccc aggccgccag
     3421 gaacccggcg gcctccagtc gcaaccgggc ggcggcgagg gccagggcga tcgacgcggg
     3481 gatcacccga ctctgcggcg ggaagccggg ccaagacgcg agccgcatca gccgctcgat
     3541 ccacggagcg cggccccgct ggagcttgat cgtcaccgcc aggtcgaacg cgtcgctgag
     3601 gcgtgccctg accaggacga agcttgcggc gaagccggcg agtcccgccc acgcgacggc
     3661 ggatgcctgc cggccccggg cgaccgcgac ccgcgacggg agcacggcga cggacgggcg
     3721 ctggtcctgg gcggcagcca tcgagcgagg atgcgacggc ggatcggcgc cgcgcaccgg
     3781 ctgcccgggg tcatgcctgt ca
//
LOCUS       DATDDI010000046         2617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_42273, whole genome shotgun sequence.
ACCESSION   DATDDI010000046 DATDDI010000000
VERSION     DATDDI010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42273"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..940)
                     /locus_tag="VIU37_00705"
     CDS             complement(<1..940)
                     /locus_tag="VIU37_00705"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY6012484.1"
                     /translation="MDPRELEHRSPDQPLLRRTRLRFLGWSAGVTLVALVLVGGAIYV
                     AVASSLADAATDQLRNRATEMGAKVSIGNEMFFQSKVAAGVVSDPAQPGVVLGGASSG
                     TLGMIVMELPDGSATAAAPGPGTTPGRNGFVSSFVKAPGSNAIALAPVDPAGLAAAAG
                     GGGPVVNEVAVDGTPLRVLSQAFAVGGTSYLVQVIGDRTSEQRTLGVLLTVLAGGSLL
                     VLVAALGVGYVLSGRALVPIRESLRRQRAFAADASHELRTPLTIVRTSLEHLRRHPEA
                     TVATLAPTIDDIDAGASRLTDLVDQLLLLARTDSGGI"
     gene            complement(943..1632)
                     /locus_tag="VIU37_00710"
     CDS             complement(943..1632)
                     /locus_tag="VIU37_00710"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6012485.1"
                     /translation="MHLLVVEDDTRLRGMLERLLLEDRHVVEVAESGEEALEVIAADC
                     GLDAIVLDVGLPRMSGLEVARQLRVRRSRIPILMLTARDAVEQRVAGLDAGADDYLVK
                     PFSYAELLARLRAIVRRGTHDVAPGTIISRGPIQLDEGPRRVTVGGRRVDLTLREFAL
                     LECLMRHPDQVLSRDQLLDHAWPFGSAVTLNSVDAYVAFLRRKLGPDGGRMIETVRGI
                     GYRLFATGVEA"
     gene            complement(1738..>2617)
                     /locus_tag="VIU37_00715"
     CDS             complement(1738..>2617)
                     /locus_tag="VIU37_00715"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY6012486.1"
                     /translation="PLVQVFGLSFPVQVGFLIAVAEIAIGLGALTGLLFRLSAAGGLA
                     LSITFWLTASWATKPYYYGPDLPYAFGWLTVALAGTGNRFTIENWFRANADGDLYDDE
                     PASPERRAVLRAGFLGFAALAVAAFAGTVGASVLGRERSEELASGGVSPAPSDGSTGA
                     TAPSATPSAGPSASPAPTAAGASQAPASGPVIARVSQLGSGRAISFADPISGDPGVLV
                     KLADGKIVAFDAICTHAGCTVEWDPTYDLLVCPCHGAAFDPAHDAQAVAGPTGTPLSP
                     IPIHVDTASGRITVNA"
BASE COUNT          388 a          937 c          969 g          323 t
ORIGIN      
        1 cgatcccgcc ggagtcggtg cgcgccagga ggagcaactg gtcgaccagg tcggtcaggc
       61 gtgaagcgcc ggcgtcgatg tcgtcgatcg tgggcgcgag cgtcgcgacc gtcgcttccg
      121 ggtgacgccg gaggtgctcc aggctcgttc ggacgatggt gagcggcgtg cgcagctcgt
      181 ggctcgcgtc cgcggcgaac gcccgctggc ggcggagcga ttcgcggatc gggaccaggg
      241 cccggccgga cagcacgtag ccaacgccga gcgccgcgac cagcaccagc aacgagccgc
      301 cggccaggac ggtcaacagc accccgagcg tccgctgctc actcgtgcgg tcgccgatga
      361 cctggacgag gtagctggtc cccccgacgg cgaatgcctg gctgaggact cgcagcggcg
      421 ttccgtccac cgccacctcg ttgacgaccg ggccgccccc gccggcggcg gccgcgagtc
      481 cggccggatc gaccggggcg agggcgatgg cattcgaccc gggggccttg acgaagctcg
      541 atacgaaacc gttgcgcccc ggcgtggtgc ccgggccggg cgcggccgct gtcgccgagc
      601 cgtccggcag ctccatgacg atcatcccga gcgtccccga ggaagcgccg ccgaggacca
      661 cgcccggctg cgccgggtcc gacaccacgc cggccgcgac cttcgactgg aagaacatct
      721 cgttcccgat gctgaccttg gcgcccatct cggtggcccg gttccggagc tggtcggtgg
      781 cggcatcggc cagcgaggac gccacggcga catagatggc gccaccgacg aggaccaggg
      841 cgaccagcgt gacccccgcg ctccagccga ggaaccgcag gcgcgtccgg cgcagcaggg
      901 gctgatcggg cgagcgatgc tcgagctcac gcgggtccat ggtcaggcct ccacgcccgt
      961 ggcgaacagg cgatagccga tgccccggac ggtctcgatc atccggcccc cgtcggggcc
     1021 gagcttgcgg cgcaggaagg cgacgtacgc gtccacgctg ttgagggtga cggcactccc
     1081 gaacggccag gcgtggtcga gcagctggtc ccgtgacagg acctggtccg ggtggcgcat
     1141 caggcattcc aggagagcga actcgcgcag cgtgaggtcg acccggcggc ccccgaccgt
     1201 cacccgccgc ggtccttcgt cgagctggat cgggccgcgg ctgatgatcg tgcccggcgc
     1261 gacgtcatgc gtcccgcggc ggacgatcgc acggaggcgc gccagcagct ccgcgtacga
     1321 gaagggcttg acgaggtagt cgtcggcgcc ggcgtcgagc ccggccactc gctgctccac
     1381 cgcgtcgcgg gcggtcagca tgaggatcgg gatccgcgag cgccggacgc gcagctgccg
     1441 ggccacctcg aggccggaca tccgcggcag cccgacgtcg aggacgatcg cgtcgagccc
     1501 gcaatcggcg gcgatcacct cgagcgcttc ctcgccggat tcggcgacct cgacgacgtg
     1561 gcgatcctcg aggagcagcc gttcgagcat gccgcgcagg cgggtgtcgt cctcgacgac
     1621 gagcaggtgc atgggtcctc ccgctccggg cgcgcaaccc gtgcggttgc cgggccgatc
     1681 ccgttctagc gccggtttct gaagaccttc tgaaagcccg gtgccgggct gcaccgctca
     1741 ggcgttgacg gtgatccggc cgctcgccgt gtccacgtgg atcgggatcg gcgacagcgg
     1801 cgtcccggtc ggtcccgcca ccgcctgggc gtcgtgcgcg ggatcgaagg cggcaccgtg
     1861 gcagggacag acgaggaggt cgtaggtcgg gtcccactcg accgtgcacc ccgcatgcgt
     1921 gcagatggcg tcgaacgcca cgatcttgcc gtcggccagc ttgacgagca cgcccggatc
     1981 gcccgagatc gggtcggcga agctgatcgc ccggccggat cccagctggc tgaccctggc
     2041 gatgaccgga ccggaggcgg gcgcctggct ggcaccggcg gcggtgggcg cagggctggc
     2101 ggacggtccg gcgctcgggg tcgccgacgg cgccgtcgcg cccgtcgagc cgtcgctcgg
     2161 ggccggagag acccccccgg acgccagctc ctccgaccgc tcccggccga ggacggacgc
     2221 gccgacggtt ccggcgaacg cggcgaccgc cagcgccgcg aagccgagga acccggccct
     2281 cagcacggcc cgccgctccg gcgaagccgg ctcgtcgtcg tagaggtcgc cgtcggcgtt
     2341 ggcccggaac cagttctcga tcgtgaaccg gttgccggtc ccggccaggg cgaccgtcag
     2401 ccagccgaac gcgtacggca ggtccggacc gtagtagtac ggcttggtcg cccacgacgc
     2461 cgtgagccag aaggtgatcg agagcgcgag gccgccggcc gccgagagac ggaagagcag
     2521 gccggtcagt gctcccaacc cgatcgcgat ctccgcgacg gcgatcagga aaccgacctg
     2581 gaccgggaac gacaggccga agacctggac cagcgga
//
LOCUS       DATDDI010000047         1723 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_458583, whole genome shotgun sequence.
ACCESSION   DATDDI010000047 DATDDI010000000
VERSION     DATDDI010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458583"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VIU37_00720"
     CDS             complement(<1..397)
                     /locus_tag="VIU37_00720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012487.1"
                     /translation="MTAPLRRAGAGTLPDGSELVWSVADGARGRRWRAVASVDGVMTH
                     ALLLEVDVAGRPSRLELTTPAGMLTLHPEEGSARLHGNVVAAAGMRHLALPWSEHHGF
                     EIASRPIATAVTAHRLARSTAVGEGRTVPV"
     gene            complement(405..>1723)
                     /gene="hflX"
                     /locus_tag="VIU37_00725"
     CDS             complement(405..>1723)
                     /gene="hflX"
                     /locus_tag="VIU37_00725"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEY6012488.1"
                     /translation="QLIDLERIPEKAFLVAVDTGEDEGWSASDSLAELANLATTAGAE
                     VVGAEWQNRRHVDPNWYVGKGKAEELARAKSETGFSLLIADDELSPGQQKALESLLNV
                     KVIDRSRLILDIFALHAQTHEGRLQVELAQLEYQLPRLTRLWTHLSRTQGGIGSRGPG
                     ESQLETDRRIIRTRISKMKERVDQVRQQRATAARGRDRRLWPTVGIVGYTNAGKSTLL
                     NALVGSEVARAEDKLFATLDPTSRQVKLGDGQVAIVTDTVGFIHKLPHQLVEAFRATL
                     DEVNRADVLIEVVDAADAHFDEHRATVQTVLDELGAGDKPRLVAFNKADLLDPSARDG
                     AVPGPAIAGQVFVSALTGFGMETLRAEIAALLASLWVDVDVSLPYAAGELLARVRERG
                     TIDLEYRERDVRVRGRVAPALAGELEAVAARWAEAAGEPAEPLVNG"
BASE COUNT          223 a          630 c          629 g          241 t
ORIGIN      
        1 ccaccggcac ggtcctcccc tcccccacgg ccgtcgaccg cgccagccga tgggccgtca
       61 cggccgtggc gatcgggcgc gacgcgatct cgaacccgtg atgctcgctc cacgggagcg
      121 ccaggtggcg catcccggcc gccgcgacga cgttgccatg gagcctggca ctcccctcct
      181 ccgggtggag ggtcagcatg ccggcgggcg tcgtgagctc gagccggctc ggccgtcccg
      241 cgacgtcgac ctcgagcagg agggcgtggg tcatgacccc gtccacgctc gccacggccc
      301 gccagcgccg gccgcgagcg ccgtcggcga ccgaccagac gagctcggag ccgtcgggaa
      361 gggtgccggc cccggcccgg cggaggggag ccgtcacggc acggtcaacc gttgacgagg
      421 ggctccgccg gctccccggc ggcctcggcc cagcgcgcgg cgaccgcctc gagctcgccg
      481 gcgagcgccg gagcgacacg gccgcggacg cggacgtcgc gctcgcgata ctcgagatcg
      541 atcgtgcccc gctcgcggac ccgcgccagg agctcgccgg ccgcatacgg cagcgacacg
      601 tcgacgtcga cccagagtga cgcgagcagc gcggcgatct cggcgcgcag cgtctccatc
      661 ccgaagccgg tcagcgccga aacgaagacc tgccccgcga tcgccggacc gggcacggcc
      721 ccgtcgcgtg ccgacgggtc gagcaggtcg gccttgttga acgcgacgag gcgcggcttg
      781 tcaccggcgc cgagctcgtc caggaccgtc tggaccgtcg cgcggtgctc atcgaagtgc
      841 gcgtcggcgg cgtcgacgac ctcgatcagg acgtcggccc ggttgacctc gtcgagcgtc
      901 gcccggaacg cctcgaccag ctggtgcggg agcttgtgga tgaagccgac ggtgtcggtc
      961 acgatcgcga cctggccgtc gccgagcttg acctggcggc tcgtggggtc gagcgtcgcg
     1021 aacagcttgt cctcggcgcg ggcgacctcc gagccgacca gcgcgttgag cagggtcgac
     1081 tttcccgcat tcgtgtagcc gacgatgccg acggtcggcc acagccggcg gtcgcggccg
     1141 cgggccgccg tggcgcgctg ctggcggacc tggtcgacgc gctccttcat cttggagatc
     1201 cgggtccgga tgatccgccg gtcggtctcg agctgcgact cgccgggtcc gcgcgagccg
     1261 atgccgccct gggtccgcga gaggtgggtc cacaggcgag tgagccgagg cagctggtac
     1321 tcgagctggg ccagctcgac ctggaggcgg ccctcgtggg tctgggcgtg gagcgcgaag
     1381 atgtcgagga tcagccgact gcggtcgatc accttgacgt tcagcaggct ctcgagcgcc
     1441 ttctgctggc ccggcgagag ctcgtcgtcc gcgatcagca ggctgaagcc cgtctcgctc
     1501 ttcgcccggg ccagctcctc ggccttgccc ttgccgacgt accagttcgg atcgacgtgg
     1561 cggcggttct gccactcggc gccgaccacc tcggcacccg ccgtggtggc caggttcgcc
     1621 agctcggcga gcgaatcgct ggccgaccag ccctcgtcct cgccggtgtc gacggcgacg
     1681 aggaaggcct tctcggggat gcgctcgagg tcgatcagct ggt
//
LOCUS       DATDDI010000048         2712 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_729155, whole genome shotgun sequence.
ACCESSION   DATDDI010000048 DATDDI010000000
VERSION     DATDDI010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2712
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_729155"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VIU37_00730"
     CDS             complement(<1..610)
                     /locus_tag="VIU37_00730"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEY6012489.1"
                     /translation="MSQTATPAPTRTGDPVADTASERATAGRPSLRGAFTALVTPFTA
                     DGTLDEAAFRRLVRWQILAGIDGLVPCGTTGESPTLTADERERLIAATVEVAGERASR
                     DRVRVIAGTGSNDTAATIRATRRAAELGADAALVVAPYYNRPDGRMLEAHFRAIADEG
                     GLPIVVYNVPGRTGANVEADTFLRLAEHPRVVGVKEASANIEQ"
     gene            complement(623..1372)
                     /locus_tag="VIU37_00735"
     CDS             complement(623..1372)
                     /locus_tag="VIU37_00735"
                     /inference="COORDINATES: protein motif:HMM:NF017024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6012490.1"
                     /translation="MQQITILGDGALGRAVEAALIERSRSAGRPTEVLVLGRPRHGRH
                     DPEDLGRPDLVIEASRPEAVVANVQAAMAAGARQLIVATTGWGPARPRLDALLRETGA
                     AAVAAPNFSLGVALFGRLVETAVELFGPLEAFDPFLLEWHRRAKRDRPSGTALDLARR
                     IVDRHPRLGSTDELEVASIRAGASPGMHLVGFDAAGETVELRLTARDRSAYAAGILTT
                     ADWLERGPRPAGLHAFDLVIDELIARRPIAA"
     gene            1682..2563
                     /locus_tag="VIU37_00740"
     CDS             1682..2563
                     /locus_tag="VIU37_00740"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEY6012491.1"
                     /translation="MPRHRRSRRASFRPSARFARAAAFAAITALALPALSPTSAGAPQ
                     PAAAHVPATPTASPPASASGAVAGVTESMRADPPRDRRAVRLVVAPTEPSRLRDYRWP
                     VAHPRITLPFGPWRTGSRIVDGRAFHDGVDMATFCGDRVVAAHDGVVLAAGRHYDSQM
                     GWIGDLKPYFARLEAKSLWTTLPIVVVIDDGNGYRSLYAHFGKIVVERGDTVHAGQLL
                     GYEGRTGHASGCHLHYGLFSPLETKAFAIDPAVSRHMKLPLWETARIDPLLVLPARGT
                     PSGTPEPGATSGGNGID"
BASE COUNT          339 a          989 c         1011 g          373 t
ORIGIN      
        1 tctgctcgat gttggcgctg gcctccttga cgcccacgac gcgcgggtgc tcggcgaggc
       61 gcaggaaggt gtcggcctcg acgttggcgc cggtgcgacc gggcacgttg tacacgacga
      121 tcgggaggcc gccctcgtcg gcgatcgccc ggaagtgcgc ctcgagcatg cggccgtcgg
      181 gccggttgta gtacggcgcg acgacgagtg cggcgtcggc gccgagctcc gccgcgcggc
      241 gcgtcgcacg gatcgtggcg gccgtgtcgt tgctgccggt gccggcgatc acccggaccc
      301 ggtctcgcga ggctcgttcg ccggccacct cgacggtcgc ggcgatcagc cgctcgcgct
      361 cgtcggcggt gagggtgggg gattcgccgg tcgtgccgca gggcacgagc ccgtcgatgc
      421 cggccaggat ctgccagcgc acgagacgcc ggaacgcggc ctcgtcgagc gtgccgtcgg
      481 cggtgaacgg ggtgacgagc gcggtgaagg ccccgcgaag gctcggccgg ccggcagtgg
      541 cacgctccga ggcggtgtcg gcgacgggat cgcccgtgcg ggtcggtgcg ggggtcgcgg
      601 tctgggacat cggagactcc tttcaggcgg cgatgggtcg acgggcaatg agctcgtcga
      661 tgacgaggtc gaaggcgtgg agcccggcgg gtcgcgggcc gcgctcgagc caatcggcgg
      721 tggtcaggat cccggcggcg taggccgacc ggtcgcgggc ggtcagccgc agctcgacgg
      781 tttcgccggc ggcgtcgaag ccgaccaggt gcatcccggg cgaggccccg gcgcggatcg
      841 acgcgacctc gagctcgtcg gtcgacccga gccgcgggtg acggtccacg atccgacggg
      901 cgagatcgag tgcggtcccc gacggccggt cgcgcttcgc gcggcgatgc cactcgagca
      961 ggaacgggtc gaaggcttcc aatggcccga acagctcgac ggccgtctcc acgagcctgc
     1021 cgaacagcgc cacgccaagg ctgaagttgg gcgccgccac ggccgcggcg ccggtctcgc
     1081 ggagcagggc gtcgagccgc gggcgagcgg gaccccatcc cgtggtcgcg acgatgagct
     1141 gccgcgcgcc ggcggccatc gctgcctgga cgttggccac gaccgcctcg ggccgcgacg
     1201 cctcgatgac gaggtcgggc cggccgaggt cttccggatc gtggcgtccg tggcgcggac
     1261 ggccgagcac gagcacctcg gtgggccggc cggcgctccg ggagcgctcg atcaacgcgg
     1321 cctcgacggc ccggccgaga gcgccgtcgc cgaggatcgt gatctgctgc atgtgggtgg
     1381 tccctcgctg ctggtggagg ggccgccggg tggaggacag ggacacaaaa acgccgcggt
     1441 caccctggtg gtgccgcggc ccctggagcc tccgttccct ggaggccccg attcgtcgct
     1501 tccgacgcgc cggttatcgc tccagggccc gtgcctcccg gcagggccgc cagagcttct
     1561 tcttggactc gtccgagagg aaccggcggt tcatgcagca agtatcacgc atcgccactg
     1621 gatgatgcaa gcatttccgc ctgacttgcg ttcggccgtc gcgcggtggt acacatcgac
     1681 cgtgccccgt caccggcgtt cgagacgcgc gagcttccgc ccgtccgccc gattcgcgcg
     1741 ggccgcggcg ttcgccgcca tcacggcgct cgccctgccg gcgctgtcgc cgacctccgc
     1801 gggcgcaccc cagccggcgg ccgcccacgt cccggcgacg ccgacggcgt cgccaccggc
     1861 cagcgcctcc ggcgccgtgg cgggcgtcac cgaatccatg cgtgccgacc cgccccgcga
     1921 tcgccgcgcc gtccggctcg tcgtcgcccc gaccgagccg tcccggctcc gcgactaccg
     1981 ctggccggtg gcccatcccc ggatcacgct gccgttcgga ccgtggcgga ccggctcgcg
     2041 gatcgtcgac ggccgcgcgt tccacgacgg cgtggacatg gccacgttct gcggtgaccg
     2101 cgtcgtcgcg gcgcacgacg gggtggtcct cgccgcggga cgccactacg acagccagat
     2161 gggctggatc ggcgacctca agccctactt cgcccggctc gaggcgaaat cgctgtggac
     2221 caccctgccg atcgtcgtcg tgatcgacga tggcaacggc taccgcagcc tgtacgcgca
     2281 tttcgggaag atcgtcgtcg agcggggcga caccgtccac gccggccagc tcctgggcta
     2341 tgaagggcgg accggtcacg cgtcgggctg ccatctccac tacgggctgt tcagcccgct
     2401 cgagacgaag gcgttcgcga tcgacccggc cgtgtcgcgg cacatgaagc taccgctctg
     2461 ggagaccgcc aggatcgacc cgctcctcgt gctgccggcc cgtggcaccc cgtcgggcac
     2521 gccggaaccg ggcgcgacct ccgggggcaa cgggatcgac tagccccggc gacccgctgc
     2581 gcctgccccg cgccatggcc tcggcgccgt tggacctggc tgccggacct agccgccggt
     2641 cctgcggtag cgtcgcccga tgagggcgta tcccgggagc ctcccgagcg cctcggccag
     2701 cgacggcccg gg
//
LOCUS       DATDDI010000049         1842 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_520987, whole genome shotgun sequence.
ACCESSION   DATDDI010000049 DATDDI010000000
VERSION     DATDDI010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520987"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..327
                     /locus_tag="VIU37_00745"
     CDS             <1..327
                     /locus_tag="VIU37_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012492.1"
                     /translation="KTLLLDLKTTRSGVFGETALQLAGYRYADVWVIDDTEIEPVQVD
                     YCAAIHVRGDGYDLVPVEAGEQEHKDLLYAMKVGQFSARSRDLVGAPILAPTTSTFRL
                     TREVPA"
     gene            324..1334
                     /locus_tag="VIU37_00750"
     CDS             324..1334
                     /locus_tag="VIU37_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012493.1"
                     /translation="MTVDIARMDTNAIAVLGNANDALDRLARWVEAASHAHRLVGGLI
                     DTAFIPDVYKPKVDPRASDEVKAEARKVAVNNATAAVLQGVTLGIDPLMALQQIYIIH
                     GRPGMYAKMMVALIQGHGHEVWTEDLSDTRAVVCGQRKGSSHVERITITMDMARRAKW
                     TSNAKYSETPQDMLWARAAGRVCDRIASDVLKGIATVEQIQDEIQATAEVGTGQRVVA
                     PRKRAAAAAIEATPVEDPPLEDVAAAEPEPVVEEPPPAAPRLITPAQQKKLHALLNET
                     GRKDRDVALVYIAGVLGREIESTKELTVAEAGRVIEAMESLDEPTLEDDNAWPPVAGE
                     GA"
     gene            1331..1681
                     /locus_tag="VIU37_00755"
     CDS             1331..1681
                     /locus_tag="VIU37_00755"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEY6012494.1"
                     /translation="MTNYANGATFERKVAALLITDGYLVMRSSGSHGEADLVALKPGQ
                     VLLVQCKSNGRLDPGDWNGLHEVAERVGAVALLAHRPAPGKVVYWRLTGPKVTRGKAP
                     YEEWTADEVVSGGQ"
BASE COUNT          318 a          648 c          651 g          225 t
ORIGIN      
        1 aagacgttgc tgctggacct gaagaccacc cggtccgggg tattcgggga gacggcccta
       61 cagctggccg ggtaccggta cgccgacgtg tgggtcatcg acgacaccga gatcgagccg
      121 gtgcaggtcg actactgcgc cgcgatccac gtccgcggcg atggctatga cctggtgccg
      181 gtcgaggccg gcgagcagga gcacaaggac ctgctctacg cgatgaaggt cgggcagttc
      241 tcggcccggt cccgcgacct cgttggcgcg ccgatcctcg cgcccaccac atccacgttc
      301 cgactgaccc gagaggtacc ggcatgaccg tcgacatcgc ccgcatggac accaacgcga
      361 tcgccgtgct cggcaacgcc aacgacgccc tcgaccggct cgcccgctgg gtcgaggcag
      421 ccagccacgc ccaccgcctc gtcggcgggc tcatcgacac cgcgttcatc cccgacgtgt
      481 acaagccgaa ggtcgacccg cgggccagcg acgaggtcaa ggccgaggcg aggaaggtcg
      541 ccgtcaacaa cgccaccgcc gcggtgctgc agggcgtgac gctgggcatc gacccgctga
      601 tggcgctgca gcagatctac atcatccacg gccggcccgg catgtacgcc aagatgatgg
      661 tcgccctgat ccagggccac ggccacgagg tgtggaccga ggacctgtcc gacacccggg
      721 cggtggtgtg cggccagcgc aagggcagca gccacgtcga gcgcatcacc atcacgatgg
      781 acatggcccg ccgggcgaag tggaccagca acgccaagta ctccgagacc ccgcaggaca
      841 tgctgtgggc ccgcgccgcc ggccgggtgt gtgaccgaat cgcctccgac gtcctcaagg
      901 gcatcgccac ggtggagcag atccaggacg agatccaggc caccgccgag gtcggcaccg
      961 ggcagcgggt ggtggcgccg cgcaagcggg ccgcggcggc tgcgatcgag gcgacaccgg
     1021 tggaggaccc gccgctcgag gacgtggcgg cggccgagcc cgagccggtc gtagaggaac
     1081 cgccgccggc agcgccgcgg ctcatcaccc cggcccagca gaagaagctc cacgccctgc
     1141 tcaacgagac cggccgaaag gaccgcgacg tcgccctggt gtacatcgcc ggggtgctcg
     1201 ggcgggagat cgagtccacc aaggaactca ccgtggccga ggcgggccgg gtcatcgagg
     1261 ccatggagtc gctcgacgag ccgacgctgg aggacgacaa cgcatggccg cccgtggctg
     1321 gtgagggcgc atgaccaact acgccaacgg ggccacgttc gagcggaagg tcgccgccct
     1381 gctcatcacc gacggctacc tcgtcatgcg ctcgtccggc tcccacggcg aagcggacct
     1441 ggtcgccctc aagccggggc aggtcctcct cgtgcagtgc aagtccaacg gtcgcctcga
     1501 cccgggcgac tggaacgggc tgcacgaggt cgcggagcgg gtcggtgcgg tcgccctgct
     1561 ggcccaccgg cccgcccccg gcaaggtcgt gtactggcgc ctgaccgggc cgaaggtgac
     1621 ccgcgggaag gccccgtacg aggagtggac agcggacgag gtggtgtcag gtggacagtg
     1681 acgctctcgc ggaccggctt gccgaggtgg ccgcacagtt ggtcggccgg gtccgcgatg
     1741 accagcccga ggccaacctg cggtggctgc gcagccaggt ccagccggac cagtacgagg
     1801 cactgctggt cgtactggcc gccgccgtgc ccaccaacca ga
//
LOCUS       DATDDI010000050         1922 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_188136, whole genome shotgun sequence.
ACCESSION   DATDDI010000050 DATDDI010000000
VERSION     DATDDI010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188136"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VIU37_00760"
     CDS             complement(<1..351)
                     /locus_tag="VIU37_00760"
                     /inference="COORDINATES: protein motif:HMM:NF014759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012495.1"
                     /translation="MPTERLMLLDGYGLVYRGYFALPPLTTSKGELVNGVFGFASIVL
                     RGIADLQPDYLAVSFDLPGPTFRHEQYAEYKATRQRMPDDLRDQFPKVREVVKALRIP
                     VYEMPGYEADDVIGT"
     gene            complement(420..1238)
                     /locus_tag="VIU37_00765"
     CDS             complement(420..1238)
                     /locus_tag="VIU37_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012496.1"
                     /translation="MQVPNAEHRAHDPMLVAGLLDRSSTDPERGRAEALVASCGDCAA
                     LHRDLVMLREATRALPAPRRTRDFTITAQDAARLRRTGWRRIVAVFGSTRDAFSRPLA
                     IGLTTIGLAGLLVTTVPGALPGSTSTASLPTLGQPAGDAGAGANSESLGGSKEAPGAS
                     AAPSAPGPAAAALTAPSPGPTDARAPLAPSGAPEPSGESFDTYVGAPAASQGAAAIAP
                     APSLSSERQGADRTTVTSIPQPASLEHVATVLLAGLLLAAGIGLFVLRWAARRI"
     gene            complement(1300..>1922)
                     /locus_tag="VIU37_00770"
     CDS             complement(1300..>1922)
                     /locus_tag="VIU37_00770"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6012497.1"
                     /translation="DPPTVEDLRSTTVTDDPVQRRDLILLERAREGDLGAFNDLVSLY
                     QDQLFALVVRMVPDRDQASDAVQEAFFSAFRHLDSFRGGSVKSWLNRICVNAAMDTQR
                     ARKRRPVQPYPELEDESWQPPAGIESDPERIAVLAERTRALSGALAAITDDQRAAIVL
                     YDVEGFDYAEIADMTGVSLGTVKSRIHRGRLALRGLLEGRMDLFRG"
BASE COUNT          277 a          657 c          732 g          256 t
ORIGIN      
        1 ggtcccgatg acgtcgtcgg cctcgtaccc gggcatctcg tagaccggga tccggagggc
       61 cttgaccacc tcgcgaacct tcgggaactg gtcgcgcagg tcgtccggca tccgctggcg
      121 cgtggccttg tattcggcgt actgctcgtg gcggaaggtc ggcccgggca ggtcgaacga
      181 gacggccagg tagtccggct gcaggtccgc gatgccgcgc agcacgatgc tcgcgaagcc
      241 gaagacgccg ttcaccagct cgcccttcga cgtggtgagc gggggcaacg cgaaataccc
      301 gcggtacacg aggccgtagc cgtcgagcag catcaggcgt tcggtgggca cgttcgccag
      361 tgtagcggcg gaccggatcg gtgcgaccgg ttcgccccct cggagccgcc ggcgcgacgt
      421 cagatgcggc gggcagccca gcgaaggacg aagagtccga tcccggcagc caggagcagg
      481 ccggccagga gcaccgtcgc cacgtgctcg agtgaggccg gctgcgggat cgacgtgacc
      541 gtggtccgat ccgcgccctg gcgctcgctc gaaagcgacg gcgccggcgc gatcgcggcc
      601 gcgccctggg aagcggcggg tgcaccgacg taggtgtcga acgactcgcc ggacggttcg
      661 ggggcaccgc tcggcgcgag cggcgcgcgc gcgtccgtcg gcccgggcga gggcgcggtg
      721 agggccgccg cggcgggtcc cggtgccgaa ggcgccgccg aggcccccgg agcctccttg
      781 gatccaccca acgactccga gttggcgccc gccccggcat cgccggccgg ctgccccagg
      841 gtcggcagcg atgcggtcga agtcgacccg ggcagggctc cgggaactgt cgtgaccagc
      901 agcccggcca gcccgatcgt ggtcaggccg atggcgagcg gccggctgaa ggcgtcacgg
      961 gtcgacccga agacggcgac gatccgtcgc cagccggtgc gtcgaaggcg tgccgcgtcc
     1021 tgggccgtga tcgtgaagtc gcgcgtccgg cgcggggccg gcagcgcgcg ggtggcctcc
     1081 cggagcatca ccaggtcgcg gtggagcgcg gcgcagtcgc cgcacgatgc gacgagggcc
     1141 tcggcgcgac cgcgctcggg atcggtcgac gatcggtcga ggaggccggc gaccagcatc
     1201 gggtcgtggg cacggtgttc ggcgttggga acctgcatct cgcccgtcag acgggtcgcg
     1261 gccgcatgag gttccgcccc gggcccgggc atcgacggat cagccacgga acaggtccat
     1321 cctgccctcg agcaggcccc gcagggcgag ccggccacgg tgaattcgcg acttgaccgt
     1381 gccgagcgag acgccggtca tgtcggcgat ctcggcgtag tcgaagccct cgacgtcgta
     1441 caggacgatg gcggcgcgct ggtcgtcggt gatggccgcc agcgcccccg acagcgctcg
     1501 cgtccgttcc gcaaggacgg cgatccgctc ggggtcgctc tcgatgccgg ccggtggctg
     1561 ccagctctcg tcctcgagct ccggatacgg ctggacgggc cgccgcttcc gtgcgcgctg
     1621 cgtatccatc gcagcgttga cgcagatccg gttcagccag gacttgacgc tcccgccgcg
     1681 gaacgagtcc aggtgccgga aggccgagaa gaaggcttcc tggaccgcgt cggacgcctg
     1741 atcgcggtca ggcaccatcc gcacgaccag cgcgaagagc tggtcctggt agagggagac
     1801 gagatcgttg aaggctccga gatcgccctc ccgggcgcgc tcgagcagga tgaggtcgcg
     1861 gcgctggacg gggtcatcgg tgaccgtcgt cgagcgaagg tcctccacgg tcgggggatc
     1921 cc
//
LOCUS       DATDDI010000051         2153 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_729209, whole genome shotgun sequence.
ACCESSION   DATDDI010000051 DATDDI010000000
VERSION     DATDDI010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_729209"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VIU37_00775"
     CDS             <1..213
                     /locus_tag="VIU37_00775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012498.1"
                     /translation="TFANVAMDLIDGGVTGRMVAIQDGKYAHTELPDPALGPRKVDVP
                     VMYNVARFRPRYDGKLGDPMLLVGLD"
     gene            complement(224..1117)
                     /locus_tag="VIU37_00780"
     CDS             complement(224..1117)
                     /locus_tag="VIU37_00780"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6012499.1"
                     /translation="MTAERQRVAFLGLGTMGAAMAANLARAGFDVTGWNRTPGRTPEL
                     AGLGVTMAPNPAAAAAAADVVVICVSDTPDVEAVLFGPDGVADGARAGTLVIDCSTIA
                     PSGSWDFAARLKEHGLAMVDAPVSGGSEGAKNATLTIFVGGDEDDVARARPVLAALGK
                     TITHVGPIGAGQAVKAVNQVILAATYLGVAEGIVLAIKAGLDVEQVVAALGGGAAQSW
                     VLANRSGRMLDNDYPLGFKVSLHRKDLGIALELANQLGAVLPVTALAAQLESGLIAAG
                     HGDDDMSALARSIRALSSLDG"
     gene            complement(1259..1948)
                     /locus_tag="VIU37_00785"
     CDS             complement(1259..1948)
                     /locus_tag="VIU37_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012500.1"
                     /translation="MATRLTRLGIVLAVLGLAFVAASGYAFIKTQEGARSLNTFSAAQ
                     GVKLTYNDQGQLTSGGKVEDAQAIMSELTNDWGYPVVASEFNPNDPVVNTASEYMFQM
                     ATIAYHTLHGTQTVVLDKDYTAKDGTVYKAGVAYDVPVNNRYWAAFDRSNPVDAAVRE
                     QAWTGTAHALIAELGVGTVTASALQLGLGLAGLFAGVGFAFVLSGLGLVWAARPERLP
                     VTAGRPATVIA"
BASE COUNT          307 a          746 c          769 g          331 t
ORIGIN      
        1 acgttcgcga atgtggcgat ggatctgatc gacggcgggg tcaccgggcg gatggtcgcc
       61 atccaggacg gcaagtacgc ccataccgag ctccccgacc cggcgctcgg tccgcgcaag
      121 gtcgacgtac cggtgatgta caacgtggcc cggttccggc cgcgctatga cggcaagctc
      181 ggcgatccga tgctgctcgt cgggctggac tgaccgccga acctcagccg tcgagcgacg
      241 agagcgcccg gatcgagcgg gccagcgccg acatgtcgtc gtcgccgtgg ccggccgcga
      301 tcaggccgct ctcgagctgg gcggcgaggg ccgtgaccgg gaggacggcc cccagctgat
      361 tggcgagctc gagggcgatc ccgaggtcct tccggtggag ggagaccttg aagccgagcg
      421 ggtagtcgtt gtcgagcatc cggccgctcc ggttggccag cacccagctc tgggcggcac
      481 cccctcccag cgcggcgacg acctgttcga cgtccagacc ggccttgatc gcgaggacga
      541 tcccttcggc cacgccgagg taggtcgccg ccaggatcac ctggttgacc gccttgaccg
      601 cctggccggc gccgataggg ccgacgtggg tgatcgtctt gccgagcgcg gcgagcaccg
      661 gccgggcacg cgcgacgtcg tcctcgtcac cgccgacgaa gatcgtgagg gtggcgttct
      721 tcgccccctc gctgccacct gacaccgggg cgtcgaccat cgccaggccg tgctccttca
      781 gacgtgcggc gaaatcccag ctgcccgagg gcgcgatcgt cgagcagtcg atcaccagcg
      841 tgcccgccct cgcgccgtcg gcgactccgt ccggcccgaa cagcacggct tcgacgtctg
      901 gcgtgtccga gacgcagatg acgacgacat ccgcggccgc ggcggctgcc gcggggttgg
      961 gggccatcgt cacgccgagc ccggcgagct ccggcgtgcg gccgggcgtg cggttccagc
     1021 cggtgacgtc gaaccccgcg cgggccaggt tggcggccat cgcggcaccc atggtgccaa
     1081 ggccaaggaa cgccacccgc tgccgttcgg ccgtcatggc gcgatcgtag tcgatcgaag
     1141 gcgcgggtag cgcgcgtgcc ggcgatgatc ggcgccggcc tcgcagaatc gaggagcccg
     1201 ccacctggcg ggctcctgcg gtctgctggt tgttggggcc ggggccaccg gccgccgctc
     1261 aggcgatgac ggtcgccggg cgcccggcgg tcaccgggag ccgctccggc cgggccgccc
     1321 agaccaggcc gagcccggag aggacgaacg cgaagccgac gcccgcgaag agaccggcga
     1381 gcccgagccc gagctgcagg gcggaagcgg tcaccgttcc gacgccgagc tcggcgatga
     1441 gcgcgtgggc cgtgcccgtc catgcctgct cgcggacggc cgcgtcgacg gggttgctgc
     1501 ggtcgaaggc cgcccagtag cggttgttca ccgggacgtc gtacgcaaca ccggccttgt
     1561 agaccgtgcc gtccttggcg gtgtagtcct tgtcgagcac gacggtctgc gtcccgtgga
     1621 gggtgtgata cgcgatcgtc gccatctgga acatgtactc gctggccgtg ttgacgaccg
     1681 gatcgttcgg attgaactcc gacgcgacca ccggatagcc ccagtcgttg gtcagctccg
     1741 acatgatcgc ctgcgcgtcc tcgaccttgc cgccgctggt cagctggccc tgatcgttgt
     1801 acgtcagctt gacgccctgg gccgcgctga acgtgttgag cgagcgcgca ccctcctgcg
     1861 tcttgatgaa cgcgtagccg ctggcggcga cgaacgcgag gccgagaact gcgagcacga
     1921 tgccgagtcg ggtgagtcga gtggccattg tctgcccttc ctgatgtggt ggaccctgtt
     1981 gatgtcctgt ggagactgtg ggtccacgac cgcgctcaag acaggtgaca agcggcatgt
     2041 ttccggtcgg acttgcagca cgtccgatct gcccttcgga ccgggccgtc tggcccggtc
     2101 gggtccgtcc gggactcacc caacctcccg ccggacgtga accggcggtc acc
//
LOCUS       DATDDI010000052         1520 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_167332, whole genome shotgun sequence.
ACCESSION   DATDDI010000052 DATDDI010000000
VERSION     DATDDI010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167332"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..499
                     /gene="pedF"
                     /locus_tag="VIU37_00790"
     CDS             92..499
                     /gene="pedF"
                     /locus_tag="VIU37_00790"
                     /inference="COORDINATES: protein motif:HMM:TIGR04494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-550 PedF"
                     /protein_id="HEY6012501.1"
                     /translation="MSLAVVAGAMLLAPVATRPHGDVNPQPVETKGLEALGETWRPSN
                     PYRGNTRAIEIGKSAYNQQCARCHGIGAVSGGLAPDLRTLDLGDPGDKDFLGPMRRGV
                     FRDGRTMMPKYEGILSQEAMWAIRSWLETVHVD"
     gene            489..1325
                     /locus_tag="VIU37_00795"
     CDS             489..1325
                     /locus_tag="VIU37_00795"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEY6012502.1"
                     /translation="MWTEALRAVLAVHAAATAVAVVDAPLETREAGRLVVAVYRDFAP
                     YAQGEQGIDVDIAKALAAKLGLALEIRDYPAADDVDGDLRNIVWRGHPLWKGRLADVM
                     MHVPVDPHVMKKNGQVQILAPYFRERLVIARSRTRIPQLPTLQVFTTEKIGVQVETVE
                     DRYLVSSFGGLLRDNVVHYASASEATAALLKGEVAAVMGRQSVIEAALGSESARFEIA
                     AAPAPGLATTGWELGLAVKAESTGLAAALQRAMADLVADGSIERIFAKRSITYRSPST
                     GL"
BASE COUNT          220 a          540 c          564 g          196 t
ORIGIN      
        1 cggacccacg tcctggagga gcgggcgcag caccgtaccg gaccatcgag gaaccgaatc
       61 catgagaagc gtccagaagc gatggggagt gatgtcgctg gcggtcgtgg cgggggcgat
      121 gctgctcgcg ccggtcgcga cgcggccgca cggcgacgtg aacccgcagc cggtggagac
      181 gaaggggctc gaggcgctgg gagagacctg gcggccctcg aacccgtacc gggggaatac
      241 gcgcgccatc gagatcggca agtccgccta caaccagcag tgcgcgcgct gccacgggat
      301 cggcgcggtc tccggcgggc tcgcgcccga cctgcgcacc ctcgatctcg gcgacccggg
      361 cgacaaggac ttcctcggcc ccatgcgcag gggcgtcttc cgcgatggcc ggacgatgat
      421 gccgaagtac gagggcatcc tgagccagga agcgatgtgg gccatccgca gctggctgga
      481 aacggttcat gtggactgag gcgctgaggg ccgtcctcgc cgtccacgcc gcggcgacgg
      541 cggtcgcggt ggtggacgcg ccgctcgaga cgcgcgaggc gggccgcctc gtcgtcgccg
      601 tgtaccggga cttcgcgccg tacgcccagg gggagcaggg catcgacgtc gacatcgcga
      661 aggcgctggc cgccaagctc ggcctcgcgc tcgagatccg cgactacccc gccgccgacg
      721 acgtcgacgg cgacctgcgg aacatcgtct ggaggggcca ccccctctgg aagggccggc
      781 tcgccgacgt gatgatgcac gtccccgtcg atccccacgt catgaagaag aacggccagg
      841 tccagatcct cgcgccgtac ttccgggagc ggctcgtcat cgcgcgcagc cgcacgcgca
      901 tcccccagct cccgaccttg caggtgttca cgaccgagaa gatcggcgtg caggtcgaga
      961 ccgtcgagga ccgctacctc gtgagctcct tcggcgggct cctgcgcgac aacgtcgtcc
     1021 actacgcgag cgcgtcggag gcgacggcgg cgctcctcaa gggagaggtc gccgcggtca
     1081 tgggccgcca gagcgtcatc gaggcggccc tcggctccga gtccgcgagg ttcgagatcg
     1141 cggcggcgcc ggcgcccggg ctcgccacca cgggctggga gctgggcctt gcggtgaagg
     1201 ccgagagcac ggggctcgcg gcggccctgc agcgggccat ggccgacctc gtcgcggacg
     1261 gcagcatcga gcgcatcttc gcgaagcgct cgatcacgta ccggtcgcct tccacgggcc
     1321 tgtagcgtgg aagccggccc gcgagcattc ctggagctgc gtctgccctc gtccgcgtcg
     1381 agctccggga tgcgggcggg cggggcgctc ctcgccgcgg cgctcctcgc cggcgggccc
     1441 gcggcggccc gggccggggt cctcacccgc gcggagctgc agcggcggtt ccccgagccg
     1501 ctcctcgtcg gcgagcgcga
//
LOCUS       DATDDI010000053         5186 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_42354, whole genome shotgun sequence.
ACCESSION   DATDDI010000053 DATDDI010000000
VERSION     DATDDI010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5186
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42354"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..1797
                     /locus_tag="VIU37_00800"
     CDS             187..1797
                     /locus_tag="VIU37_00800"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6012503.1"
                     /translation="MEERRESTPGTQFDSPADTRRDSPFALLDTSPNAILATDLEGRI
                     RYMNPKVETTFGYTRDELLGEPVEILVPLGAVHRHARRREGFHTHPAARAAGIGLDLT
                     GRRKDGTEFPAEISLAPVETADGPQVLATVIDITARKAIENQLLQAQKLESVGRLAGG
                     IAHDFNNVLFAIKGYAELLAEDLSPDRRSSLDADEALRNVHAITVAATRAATLTAQLL
                     AFSRQQVVHPEVLELNAAIEAVEPMLRPLIGEQIRLAVRLGPETGRVRMAKGQLDQIL
                     VNLVINARDAMPDGGTITIESGNLELDAAYVSQHLDVRPGPYVYLAVSDTGEGMDAET
                     RDHAFEPFYTTKAQGKGTGLGLATIYGIMQQAGGHVWLYSEPGTGSSFKLYFPRVDAP
                     VPGPHAAHVARANDAGGTLLVVEDERSVREMTTMVLRRAGYDVHAVADGTEAMRRLGE
                     LDAPIDVLITDVVMPGMSGIELAEQVLDRYPNAGVVMLSGYTAETLDLERVVGRGGIF
                     LTKPVPSEDLLAAVASAAEHREPGSHPT"
     gene            1794..3413
                     /locus_tag="VIU37_00805"
     CDS             1794..3413
                     /locus_tag="VIU37_00805"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY6012504.1"
                     /translation="MTEPPETSPRVLVVDDVDDLRRLIAIALRRGGFDVLEADSGEAA
                     MAIIQSRSIDVVVLDMGLPAMSGTDVVRALRARPETVTLPILLMTGSGTSQSVIEGLD
                     AGADDFLAKPVRLDELVARVRAHLRSHAAWSRLVADELRVRASVVGALGHMTLSTEPE
                     AAAEAVVQEIARRTEAPFIGVLQLVSGNRLQPLASFNRIAGVTRGGAMLQASRIAYLL
                     SRAALGPWAEPVPEPEPGEGAGPFFSAGIALVAGAPIYAGETLVGVLNIGAESEGPLP
                     TLGQQAKLMAAAIDYASILTAVAGPALADRREAVEVRARLERDLAARAFHPVFQPIVA
                     LETRAVVGFEALTRFDDGTPPNIRFAEAAALGLGDDYELTALEAALAEAPRLPAGAFL
                     TMNVSPAVLLGAGERLRRLLAGGARPIVLELTEHVPIEDYADLRAAIAALGEVEIAVD
                     DAGAGYASMRHILEIRPAFAKLDISLVRGIDGDELRQAMAAGFQYYALRTGCRLVAEG
                     VETEDEAGALRALGVDLAQGYLFGRPAALPV"
     gene            3511..4008
                     /locus_tag="VIU37_00810"
     CDS             3511..4008
                     /locus_tag="VIU37_00810"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY6012505.1"
                     /translation="MTRRTSLAIALVGMLGLLVLAGPVSAAGRGVKMGEANERYFFAP
                     QTQYANVGDTVTWTNGTDVAHTVTSDSGSELASDSIGDGATFEHTFSAEGTFTYHCTI
                     HPYMTGKITVLAAGAALPATDASGPSRSSDPDGSGPLVVLLAGLAGVVAAGFAIRRSR
                     PADEA"
     gene            4199..>5186
                     /gene="sufB"
                     /locus_tag="VIU37_00815"
     CDS             4199..>5186
                     /gene="sufB"
                     /locus_tag="VIU37_00815"
                     /inference="COORDINATES: protein motif:HMM:TIGR01980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEY6012506.1"
                     /translation="MTATREIVTDQREQFAFHDDIAYLRETKRGLTRATVEEISAFKE
                     EPDWMLQYRLRAYEHFLKRPIPTWTDGLDKIDFDKIVYYRKPSEREEKSWDDVPDQIK
                     ATFEKLGIPEAERKFLAGVGAQYDSEVVYHSVKEELSKLGVVFMGTDQALKEYPDLFR
                     QYFGTVVPAEDNKFSALNAAVWSGGSFVYVPKGVEVPLPLQAYFRINGENTGQFERTL
                     IVVDEGAKVHYIEGCTAPIYATESLHVAVVEVVALPNSKVRYTTIQNWSNDVYNLVTK
                     RAHAYENATVEWIDANTGSRKTVKYPSIYLRGENATADIISVAVAGKGQHQDT"
BASE COUNT          809 a         1853 c         1792 g          732 t
ORIGIN      
        1 agtcgaaggc ggcgtcgaga gcacagaacc ggcgaccgat cccgcctgac gcatcgctgc
       61 gacgggcgag cggccgcccg cccgtcgcag agcgctccgc ccggcccatc aacccacgct
      121 tgaccgaatc cgcggacgac gactaccgtc cttgcgttgg ggaccgaccg ggggggagga
      181 aggggaatgg aggagcggcg cgagtcgacg cccggcaccc agttcgactc gcccgcggac
      241 acgcgacgtg acagcccctt cgcgttgctc gacacctccc ccaacgcgat ccttgcgacc
      301 gacctcgagg gccggatccg gtacatgaac ccgaaggtgg aaacgacctt cggttacacg
      361 cgtgacgagc tgctcggcga gccggtggag atcctcgtcc cgctgggagc ggtgcatcgc
      421 cacgcccgac gtcgcgaggg gttccatacc catcccgcgg cccgtgcggc cgggatcggg
      481 ctcgacctga ccggccggcg gaaggacggt accgagttcc cggccgagat cagcctggcg
      541 ccggtcgaga cggcggacgg gccccaggtc ctcgctaccg tcatcgacat caccgctcgc
      601 aaggccatcg agaaccagtt gctgcaggcg cagaagctcg agtcggtcgg acggctggcg
      661 ggcgggatcg cgcacgactt caacaacgtc ctgttcgcga tcaaggggta cgcggagctg
      721 ctggccgagg acctctcgcc ggatcgtcgc tcgagcctcg atgcggacga ggccctccgc
      781 aacgtccatg cgatcacggt cgccgcgacg cgagcggcca ccctgaccgc gcaactgctg
      841 gcgttcagcc ggcagcaggt ggtgcatccc gaggtgctcg agctcaacgc ggcgatcgag
      901 gccgtcgagc cgatgcttcg cccgctcatc ggcgagcaga tccggttggc ggtccgcctc
      961 ggccccgaga ccgggcgggt gcggatggcc aagggccagc tcgaccagat cctcgtcaac
     1021 ctggtgatca acgcccggga cgcgatgccg gacggcggga cgatcacgat cgaatcgggc
     1081 aacctcgagc tcgatgcggc gtacgtctcg cagcacctcg atgtccggcc ggggccctac
     1141 gtctacctcg ccgtcagcga cacgggcgag ggcatggacg ccgagacacg cgaccatgcc
     1201 ttcgagccgt tctacacgac gaaggcccag ggcaagggga cgggcctcgg gctggcgacg
     1261 atctacggga tcatgcagca ggccggcggg cacgtctggc tctactccga gcccggcacc
     1321 ggatcgtcgt tcaagctcta cttcccccgc gtcgacgcac ccgtgccggg ccctcacgcc
     1381 gcccacgtgg cccgggcgaa cgatgccggc gggacgctgc tggtggtgga ggacgagcgg
     1441 tcggtccgcg agatgacgac catggtcctc cgccgagcgg gctacgacgt gcacgccgtc
     1501 gccgacggca cggaggcgat gcgccgcctc ggcgagctcg acgcgccgat cgacgtgctg
     1561 atcacggacg tggtcatgcc gggcatgtcc gggatcgagc tggcggagca ggtgctcgat
     1621 cgctatccga acgccggcgt ggtcatgctg tccggctata cggcggagac gctggacctc
     1681 gagcgcgtcg tgggccgtgg cgggatcttc ctgacgaagc cggtcccgtc cgaggacctc
     1741 ctggcggccg tcgcctcggc cgccgagcac cgagaacccg gctcccatcc gacatgaccg
     1801 aaccgccgga gacctcgccc agggtcctgg tggtcgacga cgtcgacgac ctgcggcggc
     1861 tgatcgcgat cgccctgcgg cgtggcgggt tcgacgtcct cgaggccgac agcggcgagg
     1921 ccgcgatggc gatcatccag tcgcgatcga tcgacgtggt cgtcctggac atgggcctgc
     1981 cggccatgtc gggcaccgac gtggtccggg ccctgcgggc gcggcccgag accgtgaccc
     2041 tgccgatcct gctgatgacc ggctcgggca cgagccagag cgtgatcgag gggctcgacg
     2101 ccggggctga cgacttcctc gccaagccgg ttcgcctcga cgagctggtg gccagggttc
     2161 gtgcccacct gcgcagccac gcggcctggt cgcggctggt cgccgacgag ctgcgggtcc
     2221 gggccagcgt cgtcggcgcg ctggggcaca tgacgctctc gaccgaaccc gaggccgccg
     2281 ccgaggccgt cgtgcaggag atcgcgaggc gcaccgaggc gccgttcatc ggcgtgctcc
     2341 aactcgtctc cggcaaccgg ctgcagccgc tcgccagctt caaccggatc gccggcgtga
     2401 cccgtggcgg ggcgatgctc caggccagcc gaatcgccta cctgctgtcc agggccgcgc
     2461 tggggccgtg ggccgagccc gttccggagc ccgagcccgg cgaaggcgcc ggccccttct
     2521 tctcggcggg gatcgccctc gttgccgggg ccccgatcta cgcgggcgag accctggtgg
     2581 gcgtgctcaa catcggcgcc gagagcgaag ggccccttcc cacgctcggc cagcaggcca
     2641 agctcatggc ggccgcgatc gattacgcga gcatcctgac cgccgtcgcc ggacccgccc
     2701 tggcggatcg ccgtgaggcg gtggaggtcc gcgcgcggct cgagcgcgac ctggcggccc
     2761 gtgcgttcca tccggtcttc cagccgatcg tggcgctcga gacccgcgcg gtggtcggct
     2821 tcgaggcgct cacccgcttc gacgatggga cgccgccgaa catccggttc gccgaggccg
     2881 cggctctggg tctcggcgac gactacgagc tgaccgcgct cgaggccgcc ctggccgagg
     2941 cgcccaggct gccggccggc gccttcctga cgatgaacgt ctcgccggcg gtcctgctcg
     3001 gcgccggcga gcggctgcgc cggctgctcg ccggcggggc ccgtccgatc gtcctcgagc
     3061 tgaccgagca cgtcccgatc gaggactacg ccgaccttcg cgcggcgatc gccgcgctcg
     3121 gcgaggtcga gatcgccgtc gacgacgcgg gcgccggcta cgccagcatg cgccacatcc
     3181 tcgagatccg gccggccttt gccaagctcg acatcagcct cgtccgcggg atcgacggcg
     3241 acgagcttcg ccaggcgatg gccgccggct tccagtacta cgcgctgcgg accggctgcc
     3301 ggctcgtcgc ggagggcgtc gagaccgaag acgaggccgg tgcccttcga gcgctcggcg
     3361 tggacctcgc ccagggttac ctgttcgggc gtccggcggc gctccccgtc tgacgcgcct
     3421 cggtcggccc gcagtgaccg atcggagaac cggccgggcg aacctgacgt acttgcgcgc
     3481 atccacgaac catttccggg aggacaaggg atgacgcgtc gaacctcgct tgccatcgct
     3541 ctcgtcggca tgctcgggct gctggtcctg gccgggccgg tcagcgcggc cggccgtggc
     3601 gtgaagatgg gggaggccaa cgagcgctac ttcttcgccc cgcagaccca gtacgcgaac
     3661 gtcggcgaca cggtgacctg gaccaatggc acggacgtcg cccacaccgt gacctccgac
     3721 tccggcagcg agctcgcgtc cgacagcatc ggcgatgggg cgaccttcga gcacacgttc
     3781 tcggccgagg ggacgttcac ctaccactgc accatccacc cgtacatgac cggcaagatc
     3841 actgtcctgg cggcgggggc cgcgctcccg gccactgacg cgtccgggcc gtcgcgatcg
     3901 tccgatcccg acggcagcgg tccgctggtc gtgctgctgg ccgggttggc cggggtcgtc
     3961 gccgcgggat tcgcgatccg gcgctcccgg cccgcggacg aggcgtaacc gcccgtcgcg
     4021 caacccgctc gcctgttcca acgagccggc cgtctgggga cggccggctc ttccctgccc
     4081 ggtcgttgac gcctgcgccg gtaatcccga taataaaggt cggaattaac cggccgggtc
     4141 tcaacgccgg cgacgtggcg cgcgaggcgc caccctcgaa cgaatcaccg gagtcctcat
     4201 gaccgccacc cgcgagatcg tcaccgacca gcgagagcag ttcgcgttcc acgacgacat
     4261 cgcgtacctg cgcgagacga agcgcggcct gacgcgggcc acggtcgagg agatcagcgc
     4321 gttcaaggaa gagccggact ggatgctcca gtaccgcctc cgcgcctacg agcacttcct
     4381 caagcgaccg atcccgacct ggaccgacgg tctcgacaag atcgacttcg acaagatcgt
     4441 ctactaccgc aagccgtccg agcgcgaaga gaagtcgtgg gacgacgttc cggaccagat
     4501 caaggcgacc ttcgagaagc tcggcatccc ggaggcggag cgcaagttcc tggccggcgt
     4561 cggcgcccag tacgactccg aggtggtcta ccactcggtc aaggaggagc tctccaagct
     4621 cggcgtcgtg ttcatgggca cggaccaggc gctcaaggag taccccgatc tcttccggca
     4681 gtacttcggc accgtcgtcc cggccgagga caacaagttc tcggcgctca acgcggcggt
     4741 ctggtcgggc ggctcgttcg tctacgtccc gaagggcgtg gaggtgccgc ttcccctgca
     4801 ggcctacttc cggatcaacg gcgagaacac cggccagttc gagcggacgt tgatcgtggt
     4861 cgacgaaggc gccaaggtcc actacatcga gggctgcacg gcgccgatct acgcgaccga
     4921 gtcgctccat gtggcggtcg tcgaggtcgt cgcgctgccg aactccaagg tccgctacac
     4981 gacgatccag aactggtcga acgacgtcta caacctcgtg accaagcgcg cccacgcgta
     5041 cgagaacgcg accgtcgagt ggatcgacgc gaacacgggc agccgcaaga ccgtgaagta
     5101 cccgtcgatc tacctgcgcg gcgagaacgc gaccgcggac atcatctcgg tcgcggtcgc
     5161 cggcaagggc cagcatcagg acacgg
//
LOCUS       DATDDI010000054         2187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_208923, whole genome shotgun sequence.
ACCESSION   DATDDI010000054 DATDDI010000000
VERSION     DATDDI010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208923"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..611
                     /locus_tag="VIU37_00820"
     CDS             <1..611
                     /locus_tag="VIU37_00820"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6012507.1"
                     /translation="LEVVAARTMRDGMQGRVVAGHTTAMGSYNDAYAFKLLQILKRAG
                     VTIVANPLDNIVLQGRFDTYPKRRGMTRVKELDAAGVNVACGHDSIMDPWYPLGRGSM
                     LDALSMLVHVAQMSGRSELYRAYDMVTTNPARAAEVEYGVKEGLAANFVIFDCEDEAE
                     AIRLRPSARWVVRGGRIVAETQPARSVVRHAGADHQVTFTKE"
     gene            628..2028
                     /locus_tag="VIU37_00825"
     CDS             628..2028
                     /locus_tag="VIU37_00825"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEY6012508.1"
                     /translation="MTATTQELGMPRGEGDLTIEGHGFEPIPASARYGSVGRVFTVWF
                     TPNLVPAAFFIGTLVTLDFLKLGFVTSVLAIVVGNLVGSFFVALLSTMGPRLGLAQLP
                     AARLPFGKSIVVPGLLNWISTIGWDGINNLFGAYALTILIPALPFWFALLIVVICQGA
                     LGIFGYEAIHLFEKWGAVVLGLMFVVLTISIAGQADTSLTDGFSGADQIGAFVAMVAI
                     VASFVLAWALYASDYSRYLPSDTSTSRVFWYTLLGMALASGWLEILGLLVAGKATGGE
                     SSQTIYDVLGSGSLIAGLAMVAIFIGTIAVNAMNDYTGSLSLQAAGIRVKRIYSAALV
                     AVLGFLFTNFVLNTGDFATNFTNFLLFISYWISPFVGVVLTDWWLRGRQGDGNSIVDF
                     GRLPTGTVALVALVVGFVVGIPFQNSSLGYSWGGPFNYVTANYLHGADIAYYVGGVVA
                     AVIYWLGARRSVAARG"
BASE COUNT          308 a          746 c          749 g          384 t
ORIGIN      
        1 tcctcgaggt ggtcgcggcg cggacgatgc gcgacgggat gcagggccgc gtcgtcgccg
       61 gccacacgac cgcgatgggc tcgtacaacg acgcctatgc gttcaagctc ctccagatcc
      121 tcaagcgggc cggggtcacg atcgttgcca acccgctcga caacatcgtt ctccagggcc
      181 gcttcgacac ctacccgaag cggcgcggga tgacccgggt gaaggagctg gacgcggccg
      241 gcgtgaacgt cgcctgcggc cacgactcga tcatggatcc gtggtacccg ctggggcgtg
      301 gctcgatgct cgacgcgctg tcgatgctgg tccacgtggc gcagatgagc ggccggtccg
      361 agctgtatcg cgcgtacgac atggtcacga ccaacccggc ccgggcggcc gaggtcgagt
      421 acggggtgaa ggagggccta gcggcgaact tcgtgatctt cgactgcgag gacgaggccg
      481 aggcgatccg gttgcgcccc agcgcgcgct gggtcgtgcg tggcggccgg atcgtggccg
      541 agacgcaacc ggccaggagc gtcgtccgcc acgcgggggc cgatcaccag gtgaccttca
      601 cgaaggaata ggagcgggag ggcagacatg acggcgacca cccaggaact cgggatgccc
      661 aggggcgagg gcgatctcac catcgaggga cacgggttcg agccgatccc ggcgtcggcc
      721 cggtatggct ccgtcggccg cgtgttcacg gtctggttca ccccgaacct cgtcccggcc
      781 gcgttcttca tcggcaccct ggtgacgctc gacttcctga agctcggctt cgtcacgtca
      841 gtgctcgcga tcgtcgtcgg caacctcgtc ggttcgttct tcgtggcgct gctgagcacg
      901 atgggtccgc gtctcgggct cgcccagctg cccgcggccc ggctcccgtt cggcaagtcg
      961 atcgtcgtgc ccggcctgct caactggatc agcacgatcg gctgggacgg catcaacaac
     1021 ctgttcggcg cgtacgcgct gacgatcctg atccccgccc ttcccttctg gttcgccctc
     1081 ctgatcgtgg tcatctgcca gggggcgctc gggatcttcg gctacgaggc gatccacctc
     1141 ttcgagaagt ggggcgccgt cgtcctcggc ctgatgttcg tggtcctgac gatctcgatc
     1201 gccgggcagg ccgacacgag cctgaccgac ggcttcagcg gggccgacca gatcggcgcg
     1261 ttcgtggcca tggtcgcgat cgtcgcgagc ttcgtcctcg cctgggcgct ctacgcgtcc
     1321 gactactcgc gctacctgcc gagcgacacc tcgaccagcc gggtcttctg gtacacgctg
     1381 ctcgggatgg cgctcgcctc cggctggctc gagatcctcg gcctcctggt ggccgggaag
     1441 gcgaccggcg gcgaatcgag ccagacgatc tacgacgttc tggggagcgg ttcgctgatc
     1501 gccggcctgg ccatggtcgc gatcttcatc gggaccatcg cggtcaacgc catgaacgac
     1561 tacaccgggt cgctgtcgct ccaggcggcc ggcatccggg tcaagcggat ctactccgcg
     1621 gcgctggtcg cggtgctcgg cttcctgttc accaacttcg tcctgaacac cggcgacttc
     1681 gccaccaact tcaccaactt cctgctgttc atcagctact ggatctcgcc gttcgtcggc
     1741 gtggtcctga ccgactggtg gctgcgcggc cggcagggcg acgggaactc gatcgtggac
     1801 ttcggccgcc tgccgacggg gacggtggcg ctcgtcgccc tcgtggtcgg gttcgtggtg
     1861 gggatcccgt tccagaactc gtcgctcggc tacagctggg gcggaccgtt caactacgtg
     1921 accgccaact acctgcacgg cgcggacatc gcctactacg tgggcggtgt tgtcgcggcg
     1981 gtcatctact ggctcggcgc gcgccggagc gtggcagccc ggggctgagg ccgaggtcgt
     2041 ccgcggaccc tcagcccgct ggcagcaccg gaggctggtg gaccacggcc ggcaggtcca
     2101 gcgtctcgac gtgggtcgcg atctcggcgc aggtcgcgat ccacagcccg tcgatcatcc
     2161 gggcgtgctc gatcaggccc tccaagg
//
LOCUS       DATDDI010000055         3747 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_271379, whole genome shotgun sequence.
ACCESSION   DATDDI010000055 DATDDI010000000
VERSION     DATDDI010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271379"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..934)
                     /locus_tag="VIU37_00830"
     CDS             complement(32..934)
                     /locus_tag="VIU37_00830"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase"
                     /protein_id="HEY6012509.1"
                     /translation="MSHHETWRSVLPAGFSWPAGIRAAACFTFDLDAESGLLYDHPET
                     AGQLDVMSHQAYGPRTAVPRLLRLLDRQGIRATFFIPGYSAERWPDGVRSIRDAGHEI
                     AHHGYLHEGSRDADPATEERRLLRGFEALEAVAGVRPVGYRAPNWELSYALPAILARH
                     GIRYDSGLMDADHPYRLAVSPEPGAATIVELPAHWALDDWEAYNYLPGITGSGVIGSP
                     ADVVARWTLELDALVPEGGLFMLTNHPFVSGRASRAAALEGLIEHARAIDGLWIATCA
                     EIAIHVETLDLPAVVHQPPVLPED"
     gene            complement(931..1893)
                     /gene="speB"
                     /locus_tag="VIU37_00835"
     CDS             complement(931..1893)
                     /gene="speB"
                     /locus_tag="VIU37_00835"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HEY6012510.1"
                     /translation="MPRYVPEDSLLSPRFTGPSTFARLPLVRTLDEVDLAIVGVPFDT
                     GVTYRVGGRFGPNAVRAASVMLRPHNANLDVSPFEVLSCVDHGDVAIVPGYIERSYAA
                     IEAAVAPIVEAGVVPLLIGGDHACTLPHLRATRSRGPVAVIDFDAHTDAWDSYFGERY
                     NHGTWMRRAIEEGLVDTAHSIEVGLRGPVYAAGDWPRLRTELGLDYLTTEDVLARGPE
                     ATAAVIRDRVGDRPAFISFDIDVVDPGFAPGTGTPEPGGLSAHDALAIVRRLTGIDFV
                     GFDVVEVIPAYDPAEQTAFLAANLAFEMLSLVALRRAGSGGHAA"
     gene            complement(1903..3159)
                     /locus_tag="VIU37_00840"
     CDS             complement(1903..3159)
                     /locus_tag="VIU37_00840"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012511.1"
                     /translation="MTGLRRFLLDTAPLRQDRDFRWLWSGQAISGIGNQVTRVALPFQ
                     VYVLTGSTLAIGALTFFQLVPILLFALGAGSLADAVDRRRLLLVTQTGLAICSLALAG
                     LALGGGAPVPALFAVAFVAAGLGAVDQPTRASTIPRLVPTERLSAAIALNQLNFQMAS
                     IVGPAVGGLLIATVGLAGAYVADVVSFVASFIALVAIRPLPPMLDAARPGLAAIAEGL
                     RFARRRRAILGSFVIDLDAMIFGMPTSLFPVLALDVFRTGPAGFGLLAAAPAAGAFLG
                     ALLSGWVTAVTRTGRAVVAAVIGWGLAITAFGLVTFSFPLALACLAAAGAADVFSAVF
                     RSTLVQLETPDGLRGRIMSIHGLVVTSGPRLGDIEAAGVAALVGPQAAVVSGGVLCLL
                     GVVAVVRWFPELARHTIARPGSVAAG"
     gene            complement(3185..>3747)
                     /locus_tag="VIU37_00845"
     CDS             complement(3185..>3747)
                     /locus_tag="VIU37_00845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012512.1"
                     /translation="AAIQRTRCRSCSIDPMSASSRLRRTRSKAECARVQRGLREVPPI
                     AIALVLLAGPTAALIGYRWVGAGRRARKANEASAVPFWVCHDCRSVNELRTLRCYRCG
                     VERDDVAEVEVVVDQPAVRRVPVDLPAGSPFSAVVSGGRTDAGVPVMADPDSLTPPVA
                     VGPGRESEPSTARRDSGTSERVEADR"
BASE COUNT          589 a         1353 c         1377 g          428 t
ORIGIN      
        1 catcgacggc tgaccggtcc tgccggggtc ctcagtcctc gggcagcacc gggggctggt
       61 ggaccacggc cggcaggtct agcgtctcga cgtggatcgc gatctccgcg caggtcgcga
      121 tccacagccc gtcgatggcg cgagcgtgct cgatcaggcc ctccagggcg gccgcgcgtg
      181 acgcgcggcc gctcacgaat ggatggttgg tgagcatgaa caggccgccc tcgggcacga
      241 gcgcgtcgag ctcgagcgtc cagcgcgcga ccacgtccgc cggcgaaccg atgacgccgg
      301 aaccggtgat gcccggcagg tagttgtacg cctcccagtc gtcgagcgcc cagtgcgccg
      361 gcagctcgac gatggtcgcg gcgcccggtt cgggcgagac cgccagccgg tatgggtgat
      421 cggcgtccat cagccccgag tcgtagcgga tcccgtgccg ggccaggatc gccggcagcg
      481 cgtacgacag ctcccagttc ggcgcgcgat agcccaccgg ccggacgccc gcgacggcct
      541 cgagcgcctc gaacccgcga agcagccgcc gctcctcggt cgccgggtcc gcgtcgcgtg
      601 atccctcgtg gagatagccg tggtgggcga tctcgtggcc cgcgtcgcgg atcgaccgga
      661 cgccgtccgg ccagcgctcc gcggagtagc ccgggatgaa gaacgtggca cggatcccct
      721 ggcgatcgag cagccggagc aggcgcggca ccgccgtccg gggaccgtag gcctggtggc
      781 tcatcacgtc gagctggccg gcggtctcgg gatggtcgta gagcaggccg ctctcggcat
      841 cgaggtcgaa cgtgaagcac gccgccgcac gtatcccggc cggccagctg aacccggccg
      901 gcagcaccga ccgccaggtc tcgtggtggc tcacgcggcg tgcccgccgg acccggcccg
      961 gcgcaatgcg accagcgaca gcatctcgaa cgccaggttc gcggccagga acgccgtctg
     1021 ttcggcggga tcgtaggccg ggatcacctc gacgacgtcg aacccgacga agtcgatccc
     1081 ggtgaggcgg cgcacgatcg ccagcgcgtc gtgggcggac aggccgcccg gctcgggcgt
     1141 ccccgtcccc ggcgcgaagc ccgggtcgac cacgtcgatg tcgaagctga tgaaggccgg
     1201 ccggtccccc acccgatcgc ggatcacggc ggcggtcgcc tccgggccgc gcgcgaggac
     1261 gtcctcggtg gtcaggtaat cgagcccgag ctcggtacgg aggcggggcc agtcgccggc
     1321 ggcgtagacc gggccgcgga gcccgacctc gatcgaatgg gcggtatcga cgagcccttc
     1381 ctcgatcgcg cggcgcatcc acgtgccgtg gttgtagcgc tcgccgaagt agctgtccca
     1441 ggcgtcggtg tgggcgtcga agtcgatgac cgcgaccgga ccgcgcgacc gggtggcccg
     1501 aaggtgcggc agcgtgcagg cgtggtcgcc gccgatcagg agcgggacga cgccggcctc
     1561 gacgatgggc gccacggccg cctcgatcgc cgcgtagctc cgctcgatgt agccgggcac
     1621 gatcgcgacg tcgccgtgat cgacgcagga caggacctcg aacgggctga cgtccaggtt
     1681 ggcgttgtgc ggacggagca tgacgcttgc ggcacggacg gcgttcggcc cgaaccggcc
     1741 gccgacgcgg taggtgaccc ccgtgtcgaa cggcacgccg acgatcgcca ggtccacctc
     1801 gtcgagcgtc cggaccagcg gcagccgggc gaacgtggac ggacccgtga accggggcga
     1861 caggagcgaa tcctccggga cgtagcgcgg cacggcccta tcctagccag ccgcgaccga
     1921 ccccggccgc gcgatcgtgt gccgggcgag ctccgggaac cagcggacga ccgcgaccac
     1981 gccgagcagg cacagcacgc caccggacac gaccgccgcc tgcggtccga ccagcgccgc
     2041 cacgcccgcc gcctcgatgt cgccgaggcg aggcccgctg gtcacgacca gcccgtggat
     2101 cgacatgatc cggccacgca acccgtcggg cgtctcgagc tggacgagcg tggaacggaa
     2161 gaccgccgag aagacgtcgg cggcgccggc ggcggccagg caggccagcg ccagcgggaa
     2221 cgagaaggtg accagcccga acgcggtgat cgccagtccc cagccgatca ccgcggccac
     2281 caccgcccgg ccggtccgcg tgaccgcggt cacccagccg gacagcagcg ccccgaggaa
     2341 ggcgcccgcg gcgggcgccg ccgccagcag cccgaacccc gcgggcccgg tcctgaacac
     2401 gtccagcgcg agcaccggga acagcgaggt cggcatcccg aagatcatcg cgtcgaggtc
     2461 gatcacgaag ctgcccagga tcgcccgccg ccgccgggcg aatcggagcc cctcggcgat
     2521 ggcggcgagc cctgggcgcg ccgcgtcgag catcggtggg agcggccgga tcgcgacgag
     2581 cgcgatgaac gaggccacga acgagacgac gtcggccacg tacgccccgg ccaggccgac
     2641 ggtcgcgatg aggaggcccc cgacggccgg gccgacgatc gatgccatct ggaagttgag
     2701 ctggttgagc gcgatcgccg cggacaggcg ttcggtcggg acgagcctcg ggatcgtcga
     2761 ggcccgggtc ggctggtcca ccgcgcccag gccggccgcg acgaacgcga ccgcgaacag
     2821 cgccgggacc ggcgcacccc cgccgagcgc gaggcccgcg agggccaggc tgcagatggc
     2881 cagcccggtc tgggtgacga gcagcaggcg gcggcggtcg acggcgtccg ccagcgagcc
     2941 cgcgccgagc gcgaacagca gaatcgggac cagctggaag aacgtgagcg caccgatcgc
     3001 cagggtcgac ccggtgagga cgtagacctg gaacggcagg gcgacccggg tgacctggtt
     3061 gccgatcccg gagatggcct ggcccgacca cagccaccgg aagtcgcgat cctgccggag
     3121 cggcgcggtg tcgagcagga atcggcgaag gccggtcacc cggtgcgccg atcctggcgg
     3181 atacctatcg gtcggcctcg actcgctccg atgtgccgga gtcgcggcgg gctgtcgacg
     3241 gctcggattc acgaccaggt cccaccgcga ccggaggcgt gagactgtcg ggatcggcca
     3301 tcaccggcac gccggcgtca gtgcgccccc cggacacgac cgccgagaac ggcgagcccg
     3361 ccgggagatc gaccgggacg cggcgtacgg ccggttggtc gacgacgacc tcgacctccg
     3421 cgacgtcatc acgctcgacg ccgcatcggt agcagcgcaa cgtgcggagt tcgttcacgg
     3481 aacggcagtc atggcagacc cagaatggga ccgctgacgc ctcgttcgcc ttccgagccc
     3541 gccgaccggc ccccacccaa cggtacccaa tcagcgccgc ggtcggcccg gcgaggagga
     3601 cgagcgcgat cgcgatcggc gggacttcgc ggagcccccg ctggaccctt gcgcattccg
     3661 ctttgcttcg cgtgcgccgc aatctcgagg atgcgctcat cggatcgatg gagcagcttc
     3721 tgcagcgcgt gcgctggatc gcggccc
//
LOCUS       DATDDI010000056         1779 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_396264, whole genome shotgun sequence.
ACCESSION   DATDDI010000056 DATDDI010000000
VERSION     DATDDI010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396264"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /locus_tag="VIU37_00850"
     CDS             complement(<1..647)
                     /locus_tag="VIU37_00850"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY6012513.1"
                     /translation="MTQDHCVAVLGLGYTGLPLAIAFVEAGFQVKGVDANERRVAELN
                     ARTSPIDDISDERLSNALDAGLRVVSLDDARLSEADAVFVCVPTPVTATKDPDLEPVL
                     AAARYIRDHLRRGQLIVLQSTTYPGTTTGPFRKVLEESTLAAGIDFDLAYAPERVNPG
                     DPASAARAVPRLVGASTADGTRRAAALLSSINDRVVEMTSPDAAELAKLLENVFR"
     gene            complement(705..>1779)
                     /locus_tag="VIU37_00855"
     CDS             complement(705..>1779)
                     /locus_tag="VIU37_00855"
                     /inference="COORDINATES: protein motif:HMM:NF014740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase family
                     protein"
                     /protein_id="HEY6012514.1"
                     /translation="VVVTGAGGSIGSELARQVFTIGPRRLMLVDRAESPLYLVQRELE
                     TRRGHGLGQGEVRAHLANVASRAAMDRLIAAEMPDIIFHAAAYKHVPMMEEHPSDAVH
                     VNVGGTLALLDAAVSAGVDRFVLVSTDKAVRPSNVMGASKRVAEMLVADAARRTGKAY
                     VSVRFGNVLGSNGSVVPIFQEQLEKSEPLSITHPDMTRYFMTIPEASWLILDAAALGT
                     SGDLFVLDMGDPVRIVDLARDLVRLAGRDPDTQPMDIVGIRPGEKLHEELFYDAERVE
                     PTAVPKVLRANAELPPSSVRHDAGALLGLATGDREDELRLALLEYVRGEAMDDPDAGR
                     TVPAPVAVKVEANDRVGVATTAG"
BASE COUNT          292 a          597 c          607 g          283 t
ORIGIN      
        1 ttccggaaca cgttctccag caatttggcg agctccgcgg catccgggga ggtcatctcg
       61 actacccggt cgttgatgct ggagagcagt gcggcggccc ggcgggtacc gtcggccgtc
      121 gacgctccga ccaaccgggg aacagctctc gcggcgctgg cagggtcgcc ggggttcacc
      181 cgctcgggtg cataggccag gtcgaagtcg attccggctg ccagggtgct ctcctcgagc
      241 accttgcgga agggaccagt cgtcgttccc gggtaggtcg tggactgcag cacgatcagc
      301 tggccgcgac gaaggtgatc ccggatgtag cgggcggcgg ccagtaccgg ttcgaggtcc
      361 gggtccttcg tggccgtgac cggggtgggc acgcagacga agacggcgtc ggcctctgag
      421 agccgagcgt cgtcgagaga gacgactcgc agtccggcgt cgagcgcgtt cgacaggcgc
      481 tcgtccgaga tgtcgtcgat cggagaggtc ctggcgttca gctcggcgac gcgacgctcg
      541 ttggcgtcga cacctttgac ctggaacccg gcctccacga aggcgatggc cagcggcaga
      601 cccgtatagc cgagcccgag gacggccacg cagtgatcct gggtcacgga gcctccatgc
      661 acgtggtcag caggccggaa ggagcccgtc tggagggatc ctactcaacc ggcggtcgtc
      721 gccacgccga cccgatcgtt ggcctcgacc ttcacggcaa ccggggccgg gaccgtcctt
      781 ccggcatccg ggtcgtccat cgcctcaccg cgaacatact cgaggagtgc gagacgcaac
      841 tcgtcctcac gatcgcccgt ggcgagaccc agcagcgcgc cggcgtcatg ccgaacgctc
      901 gacgggggga gctcggcatt ggcccgcaga accttcggga cggccgtggg ctccacgcgt
      961 tcggcgtcgt agaagagctc ctcgtgcaac ttctcacccg gcctgatccc gacgatgtcc
     1021 atcggctggg tgtcggggtc gcgtccggcc agtctgacca ggtcccgcgc gaggtcgacg
     1081 atccggacag gatcgcccat gtcgagcacg aacaggtcgc cactcgtgcc gagcgccgct
     1141 gcgtccagga tcagccacga cgcttcggga atggtcatga agtatcgggt catgtccgga
     1201 tgcgtgatcg acaacggctc gctcttctcc agttgctcct ggaagatcgg gacgacgctg
     1261 ccgttcgatc cgagcacgtt gccgaaccgg actgagacgt acgccttccc ggtgcgccgg
     1321 gcggcgtctg cgacgagcat ctcggccacg cgcttgctgg cacccatgac attcgacggg
     1381 cgaaccgcct tgtcggtcga cacgagcacg aatcggtcca ccccggccga gacggccgcg
     1441 tcgaggagcg caagcgtccc gccaacgttg acgtgcaccg cgtccgacgg atgctcctcc
     1501 atcatcggga catgcttgta ggccgctgcg tggaagatga tgtcgggcat ctcggccgca
     1561 atcagccggt ccatggcggc gcggctggca acatttgcga gatgcgctcg gacttcgccc
     1621 tggccgagcc catgaccacg acgggtctcg agctcgcgct ggaccaggta gagcggactc
     1681 tcggcccgat cgacgagcat gagccggcgc ggaccgatgg tgaacacctg acgggccagc
     1741 tccgacccga tggacccgcc ggctccggtg acgaccacc
//
LOCUS       DATDDI010000057         2031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_396274, whole genome shotgun sequence.
ACCESSION   DATDDI010000057 DATDDI010000000
VERSION     DATDDI010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396274"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIU37_00860"
     CDS             <1..324
                     /locus_tag="VIU37_00860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012515.1"
                     /translation="ALRFALTLRLAPALAPAVIEATEGTLGTGGAAGSGPAGPALSVV
                     RGDAFRLVGLELEARRAYAMAAWSGARDRRRRDAPASDAPAVSDTIPPVPRAGSRAST
                     TRTPR"
     gene            327..794
                     /gene="ndk"
                     /locus_tag="VIU37_00865"
     CDS             327..794
                     /gene="ndk"
                     /locus_tag="VIU37_00865"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002515614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEY6012516.1"
                     /translation="MPGIERTLVLIKPDGVQRQLVGRILARYEDRGLRLLGLKLVKVD
                     RDLAERHYAAHRGKPFFPGLVEFITSAPLVAAAFDGPNAIAVVRAINGATRPHEAAPG
                     TIRGDFALETAQNIVHASDGPEAAETELALWFTPGELHEYARDIDRWVLAPAE"
     gene            complement(847..>2031)
                     /locus_tag="VIU37_00870"
     CDS             complement(847..>2031)
                     /locus_tag="VIU37_00870"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY6012517.1"
                     /translation="LADPRTAVAAATAGGLFGVWLTLAPGEDRMGATLGVRELRAVVV
                     AGAMAIAATAWIGRDLTQLAAQPVVFGLAYLALALAVAVRFGAIPFHLWAARLTDAAP
                     ATALPVITVLAPATLAIVALGWNDAMIAPLFVDLEAERMVVLLVAILSIVFAATAALV
                     HDDLEHVVGYSIIGDAGVVLLSLAVLDPAGWTPARIWILAFIVGRSAFAAWAGGVRAV
                     FGSARIDDLRGWAIRSPILTLAFALVVLAAVGLPGLLAFEARASLVSLALDGPAATLV
                     FMATFAPLTYYARLLAVGLGRPARPEPATDWRPRLTRFDLTSPLGWARSTWDLNRAFS
                     AAMIAALLGVLALATSVGAFGEADAAAAIPATLEGPGESFAPPPLSSGEPSFQPIPTV
                     LR"
BASE COUNT          301 a          765 c          729 g          236 t
ORIGIN      
        1 gcgttgcgat tcgccctgac cctgcgcctg gcgccggcgc tggcaccggc cgtgatcgag
       61 gcgaccgagg gcaccctggg gaccggtggt gcggccgggt caggcccggc cggcccggcc
      121 ctcagcgtcg tgcgcggtga cgcgttccgc ctcgtggggc tcgagctcga ggcgcgccgc
      181 gcctacgcga tggcggcgtg gtccggggcc cgcgatcgcc gccgcaggga cgctcccgcg
      241 tcggacgcgc cggcggtatc cgatacaatc ccgcccgtcc cgcgcgccgg gtctcgcgct
      301 tccacgaccc gtaccccaag gtagacatgc caggcattga acgcacgctc gtcctcatca
      361 agcccgacgg cgtccagcgc cagctggtcg gccggatcct cgcccgctac gaggatcggg
      421 gtctgcggct cctcggactc aagctcgtga aggtcgatcg cgacctcgcc gagcgtcact
      481 acgccgccca tcgcggcaag ccgttcttcc ccggcctggt cgagttcatc acctcggcgc
      541 cgctcgtcgc ggccgccttc gacgggccga acgcgatcgc cgtcgtccgt gccatcaacg
      601 gcgcgacccg cccgcacgag gcggcgccgg gcaccatccg cggcgacttc gcgctcgaga
      661 cggcgcagaa catcgtccac gcgtccgacg gccccgaggc ggccgagacc gagctcgccc
      721 tctggttcac ccccggcgag ctgcacgaat acgcgcgcga catcgaccgc tgggtcctgg
      781 ctcccgcgga gtaggcgacc tcgatccacg acgggcgtcc gtctgggtcc tgctcggtct
      841 ctcgacctat ctgaggaccg tcgggatggg ctggaaggac ggttcgccgg aggagagcgg
      901 gggcggcgcg aacgattcgc ccgggccctc gagcgtggcc gggatcgctg ccgcggcatc
      961 cgcctcgccg aaggcgccga ccgatgtcgc gagggcgagg acgcccagca gcgcggcgat
     1021 catcgcggcg ctgaacgcgc gattgaggtc ccaggtcgaa cgcgcccagc cgagcgggga
     1081 ggtgaggtcg aaccgtgtca ggcgggggcg ccagtcggtc gctggctccg gccgggccgg
     1141 ccggccgagg ccgaccgcca gcagccgcgc gtagtaggtg agtggcgcga acgtcgccat
     1201 gaagacgagc gtcgcagccg gcccgtccag ggcgagtgac acgagcgagg ctcgcgcttc
     1261 gaacgccagc agcccgggca gcccgacggc ggcgagcacc accagggcga acgccaaggt
     1321 caggatcggt gaccggatcg cccagccccg caggtcgtcg atccgggcgc tcccgaagac
     1381 cgcccggacg cccccggccc aggccgcgaa cgcgctccga cccacgatga acgccaggat
     1441 ccagatcctg gccggtgtcc agccggccgg gtccagcacg gccagggaga gcaaaacgac
     1501 gccggcgtcg ccgatgatcg aatagcccac gacgtgctcg aggtcgtcgt gcaccagcgc
     1561 cgcggtcgcg gcgaagacga tcgacaggat cgccacgagc agcacgacca tccgctcggc
     1621 ctcgaggtcc acgaacagcg gcgcgatcat cgcgtcgttc cagcccagcg cgacgatcgc
     1681 cagcgtcgcc ggagcgagga cggtgatgac cggcagcgcc gtcgccggtg ccgcgtccgt
     1741 caggcgtgcc gcccacagat ggaaggggat cgccccgaac cggaccgcca cggcgagggc
     1801 cagcgccagg taggccagcc cgaacacgac tggttgcgcg gccagctggg tcaggtcgcg
     1861 accgatccag gccgtggccg cgatcgccat cgccccggcg accacgacgg cgcgcagctc
     1921 ccggacgccc agggtcgcgc ccattcggtc ctcgcccggg gcgagggtca gccagacgcc
     1981 gaacagtccg ccggccgtcg cggccgcgac ggccgttctc ggatcggcca g
//
LOCUS       DATDDI010000058         3201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_666813, whole genome shotgun sequence.
ACCESSION   DATDDI010000058 DATDDI010000000
VERSION     DATDDI010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_666813"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..1188)
                     /gene="wecB"
                     /locus_tag="VIU37_00875"
     CDS             complement(61..1188)
                     /gene="wecB"
                     /locus_tag="VIU37_00875"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEY6012518.1"
                     /translation="MRILSVVGTRPQLIKAAALSPVLRARHDEILVDTGQHYDDALAG
                     TFYRELGLPAPDHGLGVGGGTHAEQTAAMLTGLEAILEIHRPDAVLVYGDTNSTLAGA
                     LVAAKGGVPLAHVEAGLRSFDRRMPEEVNRVVADHLSRWLFAPTPTAVTNLRDEGITR
                     GVVLVGDLMQDLAARVGREVATDDALAAASRGLAEATHGATLAPGGYLFATVHRAENR
                     QPDALRAWAGLLGRVARPDRPVILAIHPGTRLALENEGVALSPDVRLVDPQGYRTSLT
                     LQLHAAAVVTDSGGVQREAAWLGVPCLVLRDTTEWLEAVAGSAGRMVIVGRDADLAER
                     VLAELAPPDGAPGMARDRAAGFDLAPAGAADAIAGALEAAE"
     gene            complement(1198..2616)
                     /locus_tag="VIU37_00880"
     CDS             complement(1198..2616)
                     /locus_tag="VIU37_00880"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEY6012519.1"
                     /translation="MTITTRPTHTGPSLLGGSIDVPVNPCRHEAPRSVSPWTGEPGTV
                     GSVALVGAGKMGLPLAAQFAGHGWQVTAVDVNEAVVAAINEGRSHVGEEPGLVESVAA
                     AHAAGKLRATTDGTAAARSADVVVIIVPVMLDERHQPDYRYMDAAAAAVGPGLHPGSL
                     VIFETTLPVGDTRGRYQPALEAASGLTIEEDLFVAFSPERLLSGHVFQNLATYPKLVG
                     GLGPASTARAAAFYASTLDAEVVAMSSAEAAEFSKLAETTYRDVNIALANEFANYAER
                     AGVDILEVIAASNSQPYSHIHQPGIGVGGHCIPVYPHFLLSRAPELSLVDASRKANDG
                     QVDRAIEAVAGALGGLDGAEVLVLGLTYRHGVKELAYTRAVPLIQGLQARGARVLAHD
                     PLLSDAEVAATGATPWAWGSAAPGVRAIVTQTADPAFGSLDPAWFPKLGVVLDGRNSL
                     RDLALPAGATYLGIGIPGRTGG"
     gene            complement(2613..>3201)
                     /locus_tag="VIU37_00885"
     CDS             complement(2613..>3201)
                     /locus_tag="VIU37_00885"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6012520.1"
                     /translation="YAIVSRRAGPFPARIRDVGVTIDLGTHDVDILSWIAGERPTRVY
                     AELAQRIHADHEDLLFGLLHFPSGATGMLDVNWLTPAKRRQLTVVGEEGMFELDYLTQ
                     RLTFTRADVNHPMMIGGYAPTFTGEVAELPVANAEPLGAEIDAFTGIIREGGTPAISA
                     ADGAWAVAIASGLLQAGKDGRPVDLTSLSTRLETQ"
BASE COUNT          429 a         1140 c         1207 g          425 t
ORIGIN      
        1 tgacgtcgtt gtagacgaac atcacgaccc ggagcgcccg gggcggcgag gcggccaccg
       61 tcactccgcg gcttccagcg cgccggcgat cgcgtcggcg gcccccgccg gagccaggtc
      121 gaacccggcc gctcgatcgc gggccatgcc cggcgcaccg tcgggcggtg ccagctcggc
      181 gaggacgcgc tcggccaggt ccgcgtcgcg gccgacgatc accatccgac ccgccgagcc
      241 ggcgacggct tccagccatt cggtcgtatc gcgcaggacc aggcacggga ccccgagcca
      301 ggccgcctcg cgctggacgc cgcccgaatc ggtcaccacc gccgccgcgt ggagctggag
      361 cgtcagcgaa gtccgatagc cctgcgggtc gacgagccgg acgtcgggcg acagcgcgac
      421 gccctcgttc tcgagggcga gccgcgtgcc gggatggatc gccaggatca ccggccgatc
      481 cggccgggcg acccggccga gcaggccggc ccacgcccgc agcgcgtccg gctggcggtt
      541 ctcggcgcga tggaccgtgg cgaacaggta gcctcccggc gcgagcgtcg cgccgtgcgt
      601 cgcctcggcc agccctcggc tcgccgccgc cagcgcgtcg tcggtcgcga cctcccggcc
      661 gacccgcgcg gcgaggtcct gcatgaggtc gccgaccagc acgaccccgc gggtgatccc
      721 ctcgtctcgc aggttcgtga cggcggtggg cgtgggcgcg aacagccagc gcgagagatg
      781 gtcggcgacg acccggttga cctcctcggg catccgccgg tcgaagctgc gcagcccggc
      841 ctcgacgtgg gcgagcggca cgccgccctt ggccgccacc agggcgccgg ccagcgtgga
      901 attggtgtcg ccgtagacca ggaccgcgtc cgggcggtgg atctcgagga tcgcctcgag
      961 gccggtcagc atcgccgcgg tctgctccgc gtgggtaccg ccgcccaccc cgaggccgtg
     1021 atccggcgcc ggcaggccga gctcgcggta gaacgtgccg gccagagcgt cgtcgtaatg
     1081 ctggccggtg tccacgagga tctcgtcgtg gcgggcccgg aggaccggcg acagggccgc
     1141 cgccttgatc agttgcggcc gcgtcccgac gacgctgagg attcgcaccg ggagagacta
     1201 ccctccggtt cggcccggga tgccgatgcc gaggtaggtc gcgccggccg gcagcgccag
     1261 gtcgcgcagc gagttgcgcc cgtcgagcac cacgccgagc ttcgggaacc acgccggatc
     1321 gagcgagccg aaggccggat cggccgtctg cgtcacgatc gcgcggactc ccggcgcggc
     1381 actcccccac gcccagggcg tcgcgccggt ggcggcgacc tccgcgtccg agaggagcgg
     1441 gtcgtgggcc agcaccctcg ccccgcgggc ctgcagtccc tggatcagcg gaacggcccg
     1501 cgtgtaggcc agctccttga cgccgtgccg gtaggtcaat cccaggacca ggacctccgc
     1561 accgtcgagg ccccccagcg cgccggcaac tgcctcgatc gcgcgatcca cctggccgtc
     1621 gttcgccttg cgcgaggcgt cgacgaggct cagctcgggg gcgcggctca gcaggaaatg
     1681 cgggtagacc gggatacagt gcccgccgac gccgatccca ggctggtgga tgtggctgta
     1741 cggctggctg ttggaggcag cgatgacctc gaggatgtcc acccccgccc gctccgcgta
     1801 gttggcgaac tcgttggcca gggcgatgtt gacgtcgcgg taggtcgtct cggccagctt
     1861 cgagaactcg gcagcctcgg cgctgctcat ggccaccacc tcggcgtcga gggtcgaggc
     1921 atagaacgcc gccgcccggg ccgttgaggc cgggcccagc ccgccgacca gcttcgggta
     1981 ggtggccagg ttctggaaga cgtggcccga cagcaggcgc tccggcgaga aggcgacgaa
     2041 caggtcctcc tcgatggtca gcccgctggc ggcctcgagg gccggctggt agcggccccg
     2101 ggtgtcgccg accggcaacg tcgtctcgaa gatcacgagc gagcccggat gcaggccggg
     2161 gccgacggcc gcggcggccg cgtccatgta gcgatagtcg ggctggtggc gctcgtcgag
     2221 catgaccggg acgatgatca cgacgacgtc ggccgagcga gcggcggccg tgccgtcggt
     2281 cgtcgcccgt agcttgcccg cggcatgcgc cgccgcgacc gactccacca ggcctggctc
     2341 ctcgccgacg tgcgagcggc cctcgttgat ggccgccacg acggcctcgt tgacgtcgac
     2401 tgcggtgacc tgccagccat ggccggcgaa ctgggccgcg agcggcaggc ccatcttgcc
     2461 ggcgccgacg agcgcgaccg acccgacggt gccgggctcg ccggtccacg gcgagacgga
     2521 tcgcggcgcc tcgtggcggc acgggttcac ggggacgtcg atcgagccgc cgagcaggct
     2581 cggcccggtg tgggtgggtc gggtggtgat cgtcattggg tttccagcct tgtcgagagc
     2641 gaggtgaggt ccaccggccg gccgtccttg ccggcctgga gcaggccgct ggcgatggcc
     2701 acggcccagg cgccgtcggc ggcgctgatg gcgggcgtgc cgccctcgcg gatgatcccg
     2761 gtgaacgcgt cgatctcggc cccgagcggc tcggcgttgg cgacggggag ctcggcgacc
     2821 tcgccggtga acgtgggcgc gtagccgccg atcatcatcg ggtggttcac gtcggcccgg
     2881 gtgaatgtca ggcgctgggt caggtagtcg agctcaaaca tgccctcctc gccgacgacc
     2941 gtgagctggc ggcgcttggc cggggtcagc cagttgacgt cgagcatgcc ggtcgcgccg
     3001 gacgggaagt gcaggagacc gaacagcagg tcctcgtgat cggcgtggat tcgttgggcg
     3061 agctcggcgt agacacgcgt gggtcgctca ccggcgatcc acgacaggat gtcgacgtcg
     3121 tgggtgccga ggtcgatggt cacgccgacg tcgcggatcc gggcagggaa cgggcccgcc
     3181 cggcggctga cgatcgcgta g
//
LOCUS       DATDDI010000059         2396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_417130, whole genome shotgun sequence.
ACCESSION   DATDDI010000059 DATDDI010000000
VERSION     DATDDI010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417130"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..561)
                     /locus_tag="VIU37_00890"
     CDS             complement(<1..561)
                     /locus_tag="VIU37_00890"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HEY6012521.1"
                     /translation="MSERVRVYEVGPRDGLQNEAAVIPTATKQRFIELLAAAGLREIE
                     ATSFVAPKAIPQLSDADRLLPALPRPPGVRYPVLVPNLRGLARAEAAGADAVAVFTAA
                     TDAFTQANIGMTIDESIAAFAPVLERAGELGWWRRAYVSTAFGCPYTGRVDPARAVEV
                     AVRLLALGVDEICFGDTIGVGVPSQVV"
     gene            complement(584..781)
                     /locus_tag="VIU37_00895"
     CDS             complement(584..781)
                     /locus_tag="VIU37_00895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012522.1"
                     /translation="MAHKRADTTNLPGTREELLALHRETRRRRNAAAHGSEEHVAAID
                     LIGRIEVEIARLERAMDPPLG"
     gene            complement(830..>2396)
                     /locus_tag="VIU37_00900"
     CDS             complement(830..>2396)
                     /locus_tag="VIU37_00900"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY6012523.1"
                     /translation="SAAIREMGDKAAARQLAASLGIPILAGYDEADQADAALLRAAER
                     IGFPVLVKPAAGGGGKGMRVVREPSSLREALAAARREAMAAFGDDRLILERLVEGGRH
                     VEIQVLFDVTGHGVHLGERDCSVQRRHQKVLEEAPSPAVDGALRQRLGDAALALGRAV
                     GYVGAGTCEFLVDERGSFSFLEMNTRLQVEHPVTELVTGRDLVADQLRIATGAPLDLP
                     DGFAPLTTGHAVEVRLYAEDAEDGFLPATGRVETLRWPSGDGIRVDAGIELGTEIGGR
                     FDPMLAKVIAWGADRPAALRRLAAALDGTVVLGVVTNLRFLRWLVRQPVVLAGDVRTD
                     TLDRIWPPDDWAERAAIPAEAWAIAAGALAGPTSDADAWAGGWRLNAERSVRLEADGV
                     VRSMAPAQGAATVDRVVAGEVVHVDVAGRSVAFRLTPPPDVESAARAALAHHPLGELG
                     PTEVIAPMPGAVVSVYHGLGDRLEAGDAIVTLEAMKMEHVVTAPIAGRLAELRVHPAE
                     QVVRGQVLAIVEP"
BASE COUNT          315 a          908 c          866 g          307 t
ORIGIN      
        1 gacgacctgc gacggcaccc cgaccccgat cgtatcgccg aagcagattt cgtccacgcc
       61 gagggccagg agccgcacgg ccacctccac ggcgcgagcc ggatcgactc ggcccgtgta
      121 cggacagccg aaggcggtcg acacataggc ccgccgccac cagcctagct cgccggctcg
      181 ctccaggacg ggcgcgaacg ccgcgatcga ctcgtcgatc gtcatcccga tgttggcctg
      241 ggtgaacgcg tcggttgccg cggtgaagac cgcgacggcg tccgctcccg ccgcctcggc
      301 gcgggccagg ccccgcaggt tcgggacgag caccgggtag cgcacgcctg gcggtcgcgg
      361 gagcgccggg agcagccggt ccgcgtccga gagctgcggg atcgcctttg gggcgacgaa
      421 gctcgtcgcc tcgatctcgc gcaggccggc cgcggcgagc agctcgatga accgttgctt
      481 ggtcgccgtg gggatgacgg ccgcctcgtt ctggagcccg tcgcgcgggc cgacctcgta
      541 gacccggacg cgctcgctca cgtcgatccg tcgctgcggt cggtcagccg agcggcggat
      601 ccatcgcccg ctccaggcgg gcgatctcga cctcgatccg gccgatcagg tcgatcgcgg
      661 caacgtgttc ctcgctgcca tgcgctgccg cgtttcgccg ccgccgcgtc tcgcgatgga
      721 gcgccagcag ctcctcccgg gtccccggca ggttcgtggt gtccgcgcgc ttgtgggcca
      781 tgggaacctc cgtgtcgaaa cggcgctgag cgtacccgaa gcggccgcat cagggttcaa
      841 cgatcgcgag gacctggcca cggacgacct gttcggcggg gtggacgcgc agctccgcca
      901 gccggccggc gatcggggcc gtcaccacgt gctccatctt catggcctcg agcgtgacga
      961 tcgcatcgcc ggcctcgagc cggtcgccga ggccgtggta gacgctgacg acggcgcccg
     1021 gcatcggtgc gatcacctcg gtcgggccga gctcgccgag cgggtgatgg gcgagcgccg
     1081 cacgcgcggc gctctcgacg tcgggtggtg gcgtcagccg gaaggccacg ctgcgacccg
     1141 ccacgtccac gtggacgacc tcgcccgcga ccacccgatc gaccgtcgcc gcgccctgtg
     1201 cgggcgccat cgaccggacg acgccgtccg cctccagccg gaccgagcgt tcggcgttga
     1261 gccgccagcc accggcccat gcgtccgcgt cggacgtcgg gccggccagc gcgccagccg
     1321 cgatggccca ggcctcggcg gggatcgcgg cccgctccgc ccagtcgtcc ggtggccaga
     1381 tacggtccag cgtgtccgtg cggacgtcgc ccgcgaggac gaccggctgg cggaccagcc
     1441 agcgcaggaa ccggaggttg gtcacgacgc ccaggaccac cgtgccgtcg agcgcggcgg
     1501 cgagccgtcg aagcgcggcc ggccggtccg caccccaggc gatcaccttg gcgagcatcg
     1561 ggtcgaaccg gccaccgatc tcggtgccga gctcgatccc ggcgtccacc cggatcccgt
     1621 cgcccgatgg ccagcggaga gtctcgaccc ggccggtcgc cggcaggaac ccgtcctccg
     1681 cgtcctccgc gtacaggcgg acctcgaccg cgtggccggt ggtgagcggc gcgaagccgt
     1741 cgggaaggtc cagtggcgcg ccggtggcga tccgcagctg atcggcgacg aggtcgcgcc
     1801 cggtgacgag ctccgtgacc gggtgctcga cctggagccg cgtgttcatc tcgaggaagc
     1861 tgaacgaccc gcgctcgtcc acgaggaact cgcaggttcc ggcgccgaca tagccgaccg
     1921 cccgcccgag cgccagcgcg gcgtcgccga gccgctgccg cagggcgccg tcgaccgccg
     1981 gcgagggcgc ctcctcgagc accttctggt ggcgacgctg caccgagcag tcgcgctcgc
     2041 cgaggtggac accgtggcct gtcacgtcga acaggacctg gatctcgacg tggcggccgc
     2101 cttccaccag ccgctcgagg atcagccggt cgtcgccgaa ggccgccatc gcctcgcgcc
     2161 gggcggcggc cagcgcctcg cgcagactgc tcggctcgcg gacgacgcgc atccccttgc
     2221 cgccaccgcc ggcggccggt ttgaccagga ccgggaagcc gatgcgctcc gccgcgcgca
     2281 acagggccgc gtcggcctgg tcggcctcgt cgtagccggc gaggatcggg atgccgagcg
     2341 aggcggccag ctggcgggcc gcggccttgt cgcccatctc gcggatcgcc gcggac
//
LOCUS       DATDDI010000060         2355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_250727, whole genome shotgun sequence.
ACCESSION   DATDDI010000060 DATDDI010000000
VERSION     DATDDI010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250727"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..676)
                     /locus_tag="VIU37_00905"
     CDS             complement(<1..676)
                     /locus_tag="VIU37_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012524.1"
                     /translation="MSLSDRIRSMTFGSVKAAVRRVATAIGWLALLVVIGLGGAGIVN
                     AMDHQPGTAARAELTATGDREVEPMLDAAATDLSALADQVARLGVQARGALAALNGVE
                     TATVDEAIAAGNDLVADLRLRTVALRRELATVPYVGTPVVSIELSSAVAARHAALLAA
                     IDATDGLDDAWERLTLGSVSATRMSDLLARHDDLVVRAAQRGRAARYDEALTLLDQAD
                     AAIAQAR"
     gene            complement(673..1620)
                     /locus_tag="VIU37_00910"
     CDS             complement(673..1620)
                     /locus_tag="VIU37_00910"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I NDUFA9 subunit family protein"
                     /protein_id="HEY6012525.1"
                     /translation="MSTILVTGANGFVGSHTVPALLDAGHRVVAMVRTRAAGDELLGR
                     LPAAHRPDVELREADVTHPASLGPALAGVDAVVHLVAIPRDYNGGADLARVNTEGTRA
                     VLAAMTAGGVRRLVHLGALGVADDPRLHYASSKARAEAAVRESGLDWTILKPSLQFGP
                     GDGFFNIVAGLVRISPGIVPVPGDGKSRFQPIFVGDVAAVVVRSLGDPSTVGQTFELG
                     GPRYWTYREITDEVLRALGKRRAIVPMPIPLIRLVAGSAELVHLPFPVATDQLRQLRL
                     DNVGPLDLIPSRFGFEPRPMEGALGYLRRKPRDQYGAAG"
     gene            1644..>2355
                     /locus_tag="VIU37_00915"
     CDS             1644..>2355
                     /locus_tag="VIU37_00915"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012526.1"
                     /translation="MTDRSRGREPGDLLVAMPKAELHLHLDGSLRIDTAIELARTRGV
                     DAPLDRDGMAARLIAPMPCRDQAELLRAFDLPIALMQDAEALERIAAELVEDKAADGV
                     RYVEIRWGPLLHVARGLGLADGIAAVCAGAREAAARTGTVVRLICTALRSHDPEANLR
                     LAETAAAFRDRGLTGWDLAGPEAAFPDLLTHGAAFRAARAGGLRITVHAGEWGGAAQV
                     RRALAVGPERIAHGPGAID"
BASE COUNT          309 a          868 c          897 g          281 t
ORIGIN      
        1 gccgcgcctg ggcgatggcg gcgtcggcct gatcgagcag ggtcagcgcc tcgtcgtacc
       61 gggcggcccg gccacgctgg gcggcccgga ccaccaggtc gtcgtgcctg gccagcaggt
      121 cgctcatccg cgtggcggag accgagccga gcgtgagccg ctcccacgcg tcgtcgaggc
      181 cgtcggtcgc atcgatcgcg gcgaggagcg ccgcatgacg ggccgcgacg gcggacgaca
      241 gctcgatcga gacgaccggg gtgcccacgt aggggaccgt cgcgagctcc cggcggaggg
      301 cgacggtccg aaggcgaagg tccgcgacca ggtcgttgcc cgcggcgatc gcctcgtcga
      361 cggtggccgt ctccacgccg ttgagcgcgg ccagcgctcc ccgggcctgg acgccgagcc
      421 gggcgacctg gtcggccagc gccgagaggt cggtggccgc cgcgtccagc atcggttcga
      481 cttcgcggtc gccggtcgcg gtgagttccg cccgagcggc cgtgcccggc tggtggtcca
      541 tcgcgttgac gatccccgcg ccgccgagcc cgatgacgac gaggagtgcg agccagccga
      601 tggcggtggc aacccgccgg accgccgcct tgaccgaccc gaacgtcatc gagcggatcc
      661 gatccgacag gctcatccgg cggcgccgta ctggtcgcgc ggcttgcgcc ggaggtagcc
      721 gagtgcgccc tccatcggcc gcggctcgaa gccgaagcgc gacgggatca ggtcgagcgg
      781 tcccacgttg tcgaggcgga gctgccggag ctggtcggtc gccaccggga acggcaggtg
      841 gacgagctcg gcggatccag ccacgaggcg gatcagcggg atcggcatcg ggacgatcgc
      901 gcgccgcttg cccagcgccc ggagcacctc atccgtgatc tcccgatagg tccagtagcg
      961 cgggccaccc agctcgaacg tctggccgac cgtcgacgga tccccgagcg agcggaccac
     1021 cacggccgcc acgtcgccga cgaagatcgg ctggaaccgg ctcttcccgt cccccgggac
     1081 cggcacgatc cccggggaga tgcggacgag acccgcgacg atgttgaaga agccatcgcc
     1141 cggcccgaac tggagcgacg gcttgaggat cgtccagtcg agcccggact cgcggaccgc
     1201 cgcctcggcc ctggccttcg agctcgcgta gtggagccgc gggtcgtcgg cgacgccgag
     1261 cgccccgagg tggacgagac ggcggacgcc cccggcggtc atcgcggcca ggacggcccg
     1321 ggtgccctcc gtgttgaccc gggcaagatc cgcgccgccg ttgtagtcgc gcgggatcgc
     1381 cacgaggtgg accacggcat cgacgccggc gagcgcggga cccaggctgg ccgggtgcgt
     1441 cacgtcggct tcgcgtagct cgacgtcggg tcgatgggcc gcgggcaggc ggccgagcag
     1501 ctcgtcgccg gccgcccggg tgcggaccat cgcgacgacc cggtggcccg catcgagcag
     1561 cgccgggacg gtgtggctgc cgacgaaccc gttcgcgccg gtcacgagga tcgtggacac
     1621 ggtggcaggg tagcatcgct ggcatgacgg atcgctcgcg cggccgggag cccggcgacc
     1681 tcctcgtcgc gatgcccaag gccgagctcc acctccacct cgacggctcg ctccggatcg
     1741 acacggcgat cgagctggcc cggacccgcg gcgtcgacgc gccgctcgat cgcgacggga
     1801 tggccgcccg gctcatcgcc ccgatgccct gccgcgacca ggccgagctg ctgcgcgcgt
     1861 tcgacctgcc gatcgcactg atgcaggacg ccgaggcgct cgagcggatc gccgccgagc
     1921 tggtggagga caaggccgcc gacggggtcc gctacgtcga gatccgctgg ggaccgctcc
     1981 tccacgtcgc ccgcgggctc gggctcgccg acgggatcgc ggccgtgtgc gcgggcgcgc
     2041 gcgaggccgc ggcgcggacc ggcacggtcg tccggctcat ctgtacggca ctccgctcgc
     2101 acgatcccga ggccaatctc cggctggccg agaccgcggc cgcgttccgg gaccggggcc
     2161 tgaccggctg ggacctggcc gggccggagg cggccttccc agatctgctc acgcacgggg
     2221 ccgcgttccg ggcagcgcgg gcgggcggcc tgcggatcac cgtccacgcc ggcgagtggg
     2281 gcggggccgc gcaggtccgc cgcgcgctcg cggtcgggcc cgagcggatc gcccacggtc
     2341 ccggcgccat cgacg
//
LOCUS       DATDDI010000061         3102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_625380, whole genome shotgun sequence.
ACCESSION   DATDDI010000061 DATDDI010000000
VERSION     DATDDI010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_625380"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(383..727)
                     /locus_tag="VIU37_00920"
     CDS             complement(383..727)
                     /locus_tag="VIU37_00920"
                     /inference="COORDINATES: protein motif:HMM:NF017273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEY6012527.1"
                     /translation="MSIDLVVLAVFMGLVTYPSRALPLLAPGIERLPRIATEYLRLVG
                     PAVLTALAAVNVMVLTPEGGSPAFHVGIEWLAVAVCAALTAWRRNLLIGLVGAVVIVA
                     VARALGVASLPA"
     gene            complement(724..1470)
                     /locus_tag="VIU37_00925"
     CDS             complement(724..1470)
                     /locus_tag="VIU37_00925"
                     /inference="COORDINATES: protein motif:HMM:NF015549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEY6012528.1"
                     /translation="MSAQLVATDLGASRRQLAVEGLGIAVSAAAFGFVYGLSARNAGF
                     SPIEAMAMSLIVFAGAAQFAAVGYVANGLAWPGVILLTALLNARHLLYSAALAPNLKS
                     IPAPRRALMAHVLTDEAFALSVGHFSRIGRTDERGYWIAAIGSTWIPWNLATLAGVTI
                     GGQIPDPARFGLDVVFPAAMIGLAVGLVAGRRELVAAFSGAVVAVATSLAFGPGIGII
                     AGGLAGPLVGMAVPGAATTPVTHDDAAGLP"
     gene            complement(1467..2339)
                     /locus_tag="VIU37_00930"
     CDS             complement(1467..2339)
                     /locus_tag="VIU37_00930"
                     /inference="COORDINATES: protein motif:HMM:NF015549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEY6012529.1"
                     /translation="MPDEGLRGPPPRRGVRRREARRLRRLRRHLRPDLPALNGVAAGA
                     GGTESALLAASRRQLVVESLGIAVSGVAFGFVYGLSAHNAGFSPIEAMAMSVIVFAGA
                     AQFAAIGYVAGGLAWPGVILLTALLNARHLLYSAALAPRLREVPAPRRALMAQVLTDE
                     AFALSIGHFSRIGRTDERGYWIAAIGADWIPWNLATLAGVTIGGQIPDPAGLGLDVVF
                     PASMMGLAVGLMLGRREVVAAGGGAAIAVVTSLAVGPAVGIIGGGLLGPLIGMAVPGR
                     AAGRALHDGAAGLP"
     gene            complement(2228..2500)
                     /locus_tag="VIU37_00935"
     CDS             complement(2228..2500)
                     /locus_tag="VIU37_00935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012530.1"
                     /translation="MTSNVSQNYPYTSETEADRAKQIASLVAARDDLAGRLASETTPL
                     DASERWWVWKCPTKGCAGLLHAAGYAAEKHAVYVVCDGTCGQTFLR"
     gene            complement(2572..>3102)
                     /locus_tag="VIU37_00940"
     CDS             complement(2572..>3102)
                     /locus_tag="VIU37_00940"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY6012531.1"
                     /translation="YLGFGSGVVDPATGIHYQNRGSYFSLDPGHPNVLEPGKRTLHTL
                     LPGMLFRDGQAGPWIVAGSMGGDAQPQIHAQLASALVDGGVDVRTGVSAPRWFVEPAE
                     HFAPPVEVRLEPRHRPGIAEALVALGHPVTLMEPFDGDLGHEHAIELVDGGPAAPGGS
                     LAAATDPRSAGLPSVL"
BASE COUNT          498 a         1116 c         1097 g          391 t
ORIGIN      
        1 tcaatggtga agtctacaag gtaacctgtc tatccatggg aaaccctcac tgcgtaacgt
       61 tcgtcgatga cgttgaggct ttccccgttt gcaaagtcgg accaataatc gagaaccaca
      121 aagtattccc caaacgtacc aacgtcggct tcgtacaggt agcaagcaaa agcgagttag
      181 atgttcgggt ttgggaacga ggttgcggag agactcttgc ttgcggcacc ggaacctgcg
      241 cagcggtagc ggttgctaac aaacttggta aagtaggaaa caaagttacc gttcacgtgc
      301 ttggtggaga gtgctcatcg agatcgaggc cgaagcgcgt cgcggctgac cggcgcggcc
      361 ggcctgcgtg cgcgcgcagg tgtcaggccg gcagcgaggc gacccccagg gcgcgcgcga
      421 ccgcgacgat gacgaccgcg ccgaccagcc cgatcagcag gttccgacgc cacgccgtca
      481 gcgcggcgca gacagccact gccagccact cgatcccgac gtggaacgcc ggggagccac
      541 cctcgggtgt cagcaccatg acgttgaccg cggccagggc ggtcaggacc gccggcccga
      601 ccaggcgcag gtattccgtg gcgatccgcg gcagccgttc gatgccgggc gccaggagcg
      661 ggagtgcccg cgaggggtag gtgaccaggc ccatgaacac ggccaggacg acgaggtcga
      721 tgctcacggc agtcccgccg cgtcgtcgtg cgtgacgggc gtcgtcgcgg cgccgggaac
      781 ggccatcccg accaggggtc cggcgagtcc gccggcgatg atcccgatcc cgggcccgaa
      841 ggccaggctg gtggcgaccg cgaccaccgc gccgctgaac gcggccacga gctcgcgccg
      901 cccggccacg agcccgaccg ccagtccgat catcgccgcg gggaacacga cgtcgagccc
      961 gaatcgggcg gggtcgggga tctgcccgcc gatcgtcacc ccggccagcg tcgcgaggtt
     1021 ccacgggatc caggtcgagc cgatcgccgc gatccagtag ccgcgctcgt ccgttcggcc
     1081 gatccgcgag aagtggccga cgctgagggc gaacgcctcg tccgtcagca cgtgggccat
     1141 gagcgcccgc cgaggcgccg ggatcgactt gaggttcggc gcgagcgctg cggagtagag
     1201 caggtggcgc gcgttgagca gcgcggtcag caggatgacc ccgggccagg ccaatccgtt
     1261 cgccacgtag ccgaccgccg cgaactgggc cgcgccggcg aacacgatca ggctcatcgc
     1321 catggcctcg atcggcgaga acccggcatt gcgcgcggac aggccgtaca cgaacccgaa
     1381 cgcggcagcc gagactgcga tcccgagccc ttcgacggcc aactgccgcc ggctcgctcc
     1441 caggtccgtc gcgacgagct gggcgctcac ggcagtcccg ccgcgccgtc gtgcagggcc
     1501 cgtcccgccg cccggccggg aacggccatc ccgatcagcg gcccgagcag tccgccgccg
     1561 atgatcccga ccgccggccc gaccgccagg ctggtgacga ccgcgatggc ggctccgccg
     1621 ccggccgcga ccacctcgcg gcgcccgagc atcagcccga ccgcgagccc catcatcgat
     1681 gccgggaaca cgacgtcgag cccgagcccg gccggatccg ggatctgccc gccgatggtc
     1741 acgccggcca gggtggccag gttccacggg atccagtccg cgccgatcgc cgcgatccag
     1801 tagccgcgct cgtcggtccg cccgatccgc gagaaatgcc cgatgctcag cgcgaacgcc
     1861 tcgtccgtca gcacctgggc catgagcgcg cgccgcggtg cgggaacctc gcggagccgg
     1921 ggcgccaggg ccgcggagta gagcaggtgg cgggcgttga gcagcgcggt cagcaggatg
     1981 accccgggcc aggccaggcc accggccacg tagccgatcg ccgcgaactg ggccgcaccg
     2041 gcgaacacga tcacgctcat cgccatcgcc tcgatcggcg agaacccggc gttgtgggcc
     2101 gacaacccgt agacgaaccc gaacgcgacg ccggagacgg cgatcccgag cgattcgacg
     2161 accagctgcc ggcggctcgc cgccaggagc gccgactcgg tcccgccggc gcccgccgcg
     2221 accccgttca gcgcaggaag gtctggccgc aggtgccgtc gcagacgacg tagacggcgt
     2281 gcttctcggc ggcgtacccc gcggcgtgga ggaggcccgc gcagcccttc gtcgggcact
     2341 tccagaccca ccaccgctcg ctcgcatcga ggggcgtcgt ctcgctcgcg agcctgccgg
     2401 caagatcgtc gcgagccgcg accagggagg cgatctgctt ggcgcgatcg gcctcggtct
     2461 cgctcgtgta cgggtagttc tggctgacgt tcgaggtcac gtgcccctcc ctgcgcgcgc
     2521 cggacggcga ccgatcgcgg cagtatcgca tggcgcgttc gggatcgccc ctcagaggac
     2581 ggacggcaac ccggcgctgc ggggatccgt ggccgcggcc agcgaccctc ccggggccgc
     2641 cggtccgccg tcgacgagct cgatcgcgtg ctcgtggccg aggtcgccgt cgaacggctc
     2701 catcaacgtc accgggtggc cgagcgcaac gagcgcctcg gcgatcccgg gccggtggcg
     2761 cggctcgagc cggacctcta ccggcggggc gaagtgctcg gcgggctcca cgaaccagcg
     2821 cggggcgctg actccggtcc ggacgtccac gccgccgtcg acgagggccg acgcgagctg
     2881 ggcatggatc tgcggctggg cgtcgccgcc catcgagccg gcgacgatcc acggcccggc
     2941 ttggccgtca cggaacagca tcccggggag cagcgtgtgg agcgtccgct tgccaggctc
     3001 gaggacgttg gggtgccccg ggtccaggct gaagtagctg ccccggttct ggtagtggat
     3061 cccggtggcc ggatccacca cgcccgatcc gaacccgagg ta
//
LOCUS       DATDDI010000062         1549 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_479611, whole genome shotgun sequence.
ACCESSION   DATDDI010000062 DATDDI010000000
VERSION     DATDDI010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479611"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VIU37_00945"
     CDS             complement(<1..332)
                     /locus_tag="VIU37_00945"
                     /inference="COORDINATES: protein motif:HMM:NF042609.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0758 domain-containing protein"
                     /protein_id="HEY6012532.1"
                     /translation="MARSRDPEPAAGRAIRELPLAERPRERLALRGVGGLTSAELIGL
                     VWGSGTRGRSAVDLAADALAAHDGLAGLARASEPELATVPGVGPAKAAQLVAAFELGR
                     RLLADWPAA"
     gene            complement(536..>1549)
                     /locus_tag="VIU37_00950"
     CDS             complement(536..>1549)
                     /locus_tag="VIU37_00950"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEY6012533.1"
                     /translation="PVSGPEPDASTELPPSPPVDGRLGASSFTIEGRQAPALFVIGWL
                     ASIVGVVIIAIAVSADRGLASALALLGGLVLVSIGLVAAAGSQGIERRARGMTGYAGP
                     SPLLVFAASIPVSVFAIVVLALPLDAAGVALDGPLGAVLSVTIQAAVYLGLVRLLVVD
                     AGALDWRAMGVVRPNLQALADAAGGALWAIPVIVLTIPVSAILLAVFPVTPESPLPPT
                     GTAGGFALSLLAGVLVAPFGEEVLFRGFATTAWVRGIGVRGGIVRAALVFAVAHVLTI
                     SGATTADAFGLAVVGFATRLPIALALGWLFVRRGTIWSSFGLHAAFNLVLLVLAEVAS
                     RSI"
BASE COUNT          275 a          574 c          569 g          131 t
ORIGIN      
        1 gccgccggcc agtcggcgag gagccgccgg ccgagctcga acgcggcgac cagctgcgcg
       61 gccttggccg ggccgacgcc cggtacggtg gccagctccg gttcggaggc gcgcgcgagt
      121 ccggcgagcc cgtcgtgcgc agcgagggcg tcggcggcaa ggtcgaccgc cgaacgccca
      181 cgggtccccg agccccagac cagcccgatg agctctgccg aggtcaaccc accgacacca
      241 cgcagggcaa gtcgctcgcg cgggcgttcg gcgagcggca gttcgcgaat ggcccggccg
      301 gccgcgggct ccggatcgcg ggaacgggcc acggtcctct ccagtctttc ctcaacggcg
      361 atcaacgggc gatcagcggg atcggcgtcc ccgggcccag acgacgggag cccgccgatt
      421 ccccccgcca tccggaccac gaggacgacg cgaagcctac ggagcggccc tcaccgaggg
      481 ctcaaccggc cgtgcatcgg ggctcaccgg tgatcgccac ccctcgtccc cgccctcaga
      541 tcgaccggct ggccacctcg gcgagcacca gcaagaccag gttgaacgcg gcatgaagcc
      601 cgaaggacga ccagatggtg ccgcgccgca cgaacagcca accgagcgcc agggcgatcg
      661 gcagccgcgt cgcgaagccg accacggcga gcccgaacgc gtcggcggtc gtggcccccg
      721 agatcgtcag gacgtgggcg accgcgaaca cgagcgccgc ccgcacgatg ccgccacgga
      781 cgccgatgcc acgcacccag gccgtggtgg cgaacccgcg gaacaggacc tcctcgccga
      841 acggcgcgac cagcaccccg gccagcagcg acagcgcgaa gccgcccgcc gtaccggtcg
      901 gtggcagcgg gctttccggg gttaccggaa agaccgccag gaggatcgcg gagaccggga
      961 tcgtgaggac gatgaccggg atggcccaga gcgccccacc ggcggcatcg gcgagcgcct
     1021 ggaggttggg acggacgacc cccatcgccc gccagtcgag cgcgccggcg tccacgacca
     1081 gcaggcgaac caggccgagg tagacggcgg cctggatcgt gaccgacagg acggcgccga
     1141 gcggaccgtc gagggcgacc ccggcggcat cgagcggaag cgccaggacg acgatcgcga
     1201 agaccgagac ggggatcgag gccgcgaata cgaggagcgg cgacggaccg gcatagccgg
     1261 tcatgccgcg ggcacggcgc tcgatcccct gcgagccggc ggcggccacc aggccgatcg
     1321 agacgaggac gagcccgccc agcaacgcca gcgccgaggc gagccctcgg tccgccgaca
     1381 cggcgatcgc gatgatgacg acgccgacga tcgacgccag ccagccgatg acgaacagcg
     1441 cgggtgcctg gcggccctcg atcgtgaagg acgacgcgcc gagccgaccg tcgaccggag
     1501 ggctcggagg cagctcagtc gaggcgtccg gctcgggacc cgagacggg
//
LOCUS       DATDDI010000063         1693 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_479656, whole genome shotgun sequence.
ACCESSION   DATDDI010000063 DATDDI010000000
VERSION     DATDDI010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479656"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..920
                     /locus_tag="VIU37_00955"
     CDS             <1..920
                     /locus_tag="VIU37_00955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012534.1"
                     /translation="PGGSAGREGAGSTGRSSSGTGSATPRGGAGPAGSGSRAQGSTTS
                     GRRRATRKATLGSTSYDEARDATDPRWAGASWYGPTTGEYWIVNPREYADPRKHGPGY
                     SSRLRTGSGLDEPGLGQSAADVPPDAAADPPTAEAMGAGAPTTSADAMPRQEPGDEPF
                     IDAIVRSGSPDPLRRLGLVLLAWAPVGIAATAVIGQLTGCASYSAACDGTDPFLPWVA
                     QAIIVGLLLVVPPLARVFAAGTVGLVIGLVPVTGLVIALGGAGSAAAPPVLAAVLAIA
                     WILGAAWGTRRLTVARATEPPVAPPGGRP"
     gene            917..>1693
                     /locus_tag="VIU37_00960"
     CDS             917..>1693
                     /locus_tag="VIU37_00960"
                     /inference="COORDINATES: protein motif:HMM:NF015956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEY6012535.1"
                     /translation="MTAGESRHRAGDLSGAAQEYLRVLRTLSGNDARITAAVVARRLG
                     VSTQAASEMLRRLAHDGLVAGPEASAAAAPTVARRELHLTTAGRAAADAIFRRHALCE
                     WLLSEVVGLGWAESDKEAERLQAAISPQVEARLDELLGHPETCPHGNPIDLETARRRP
                     AGVALSSIPAGERATIYRVTEEAEEDSGLLGYLEARGLRPGAGIAILARSESLDSLTL
                     DGPLGRATLGLRPAALIRVLQGEPDPALFHRPPGATAGSAD"
BASE COUNT          190 a          657 c          636 g          210 t
ORIGIN      
        1 ggccgggtgg cagcgccggg cgggagggcg ccggctcgac cggtcgctcg tcatcgggca
       61 cgggaagcgc gactccgcga ggcggtgccg ggccggccgg ctctggatcc cgggcccagg
      121 gatcgacgac ctccggccgg cgccgcgcga cccgcaaggc gacgctcggt tcgacgagct
      181 acgacgaggc gcgcgacgcg accgatccgc gctgggccgg cgcgtcgtgg tacggcccga
      241 cgacgggcga gtactggatc gtcaacccgc gggaatacgc cgatcctcgg aagcacggcc
      301 ccgggtattc cagccgcctc cggaccggtt ccgggctgga cgagccgggg ctcggccaat
      361 cggctgccga cgtgccaccg gacgccgccg ccgatccccc gaccgcggaa gcgatgggcg
      421 cgggcgctcc caccaccagc gcggatgcga tgccacgaca ggagcccggg gacgagccgt
      481 tcatcgacgc gatcgttcgg tcgggatcgc ccgacccgct gcggcggctc ggcctcgtgc
      541 tcctggcctg ggcgccggtc ggcatcgcgg cgacggcagt gatcggccag ctcaccggct
      601 gcgcgtcgta ctccgccgcc tgcgacggga cggatccgtt cctgccgtgg gttgcgcagg
      661 cgatcatcgt cggcctgctc ctcgtcgtcc cgccgctggc gcgggtcttc gcggcgggga
      721 cggtcggcct cgtcattggc ctcgtgccgg tcaccgggct cgtcatcgcg ctcggcggcg
      781 ccggttccgc ggctgcgcca ccggtcctcg ccgcggtcct cgcgatcgcc tggatcctgg
      841 gggcggcgtg gggcacccgg cggctcacgg tggcgcgagc caccgagccg cccgtcgcgc
      901 cgcccggtgg caggccatga ccgccggcga gagccgtcac cgggccggcg acctctcggg
      961 ggccgcccag gagtacctca gggtcctgcg gacgctgtcg ggcaacgacg cccggatcac
     1021 ggccgcggtc gtggcgcgcc ggctcggggt gagcacccag gccgcgagcg agatgctccg
     1081 gcggctggcc cacgacggcc tcgtggctgg tccggaggcg agcgccgccg cggcgccgac
     1141 ggtcgcgcgt cgcgagctcc atctcacgac cgccggccgc gccgccgccg acgcgatctt
     1201 ccggcggcac gccctgtgcg agtggctcct gagcgaggtc gtcgggctcg gctgggccga
     1261 atcggacaag gaggcggagc gcctgcaggc cgcgatctcg ccgcaggtcg aggctcgcct
     1321 cgacgagctg ctcggccacc ccgagacctg cccgcacggc aatccgatcg atctcgagac
     1381 cgctcgccgc cgtcccgccg gcgtggccct ctcgtcgatc ccggcggggg agcgggccac
     1441 gatctaccgg gtcacggagg aggccgagga ggactccggc ctgctcggct acctcgaggc
     1501 ccgcggcctg cgacccggcg ccggcatcgc catcctcgcc cggtcggagt cgctggactc
     1561 cctcaccctc gacggaccgc ttggccgggc gaccctcggc ctgaggcccg ccgcgctcat
     1621 ccgggtgctc cagggcgaac ccgatccggc gctgttccat cggccgcccg gcgccaccgc
     1681 aggctccgcc gat
//
LOCUS       DATDDI010000064         1595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_667015, whole genome shotgun sequence.
ACCESSION   DATDDI010000064 DATDDI010000000
VERSION     DATDDI010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667015"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1595)
                     /gene="alaS"
                     /locus_tag="VIU37_00965"
     CDS             complement(<1..>1595)
                     /gene="alaS"
                     /locus_tag="VIU37_00965"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEY6012536.1"
                     /translation="MNQFKDVFLGREKRRYTRATSSQKCMRVSGKHNDLDNVGPSLRH
                     HTFFEMLGNFSFGDYFKKDAIRFGWDFLTREAGLDPSRLTVSVFRDDDEAYDIWHKSM
                     GLPASQIVRFDEKDNFWSMGPTGPCGPCSEIIYDQGEGTGCGRPTCAVGCDCDRFLEI
                     WNLVFMQYNANEDGTKTPLPKPSIDTGMGLERLAAVVQGQPTNYDTDLFRPVIGEIAR
                     MCGTAYGASKASDAAMRVIADHSRATAFLIADGILPSNEGRGYVLRRIMRRALRHGKK
                     IGFDGPFLHKVAAAVVREFSAAYPELGTSAAYIDTVTVHEEKRFLETLDAGLRMVEDE
                     FARMGKSGRTVFAGDVAFKLYDTFGFPVDLTADLCRERGVALDTAGFEAEMGKQRAQS
                     RTAWKGGEVGASDAAAAALSRDGVSVEFVGYDRLAAGAMVLALFRDGQRAASAGPGDE
                     VDLVTDVTPFYGESGGQAGDTGSAAGQGFRLEIAATRRPAADLVIHRAKVVEGTVREG
                     AAVDLAVDETVRRRTQANHTATHL"
BASE COUNT          223 a          583 c          540 g          249 t
ORIGIN      
        1 aggtgggtcg ccgtgtggtt ggcctgggtc cgccgccgca cggtctcgtc gaccgcgagg
       61 tccaccgcgg ccccttcccg caccgtcccc tcgacgacct tcgcccggtg gatgacgagg
      121 tcggccgcgg gccgccgggt cgcggcgatc tcgagccgga aaccctggcc ggcggccgag
      181 ccggtgtcgc ccgcctgccc gcccgactcg ccgtagaacg gggtgacgtc ggtcacgaga
      241 tcgacttcat cgcccggccc cgccgacgcc gcgcgctgcc cgtcgcggaa cagggcgagg
      301 accatggccc ccgcggcgag ccggtcgtac ccgacgaact cgacggagac cccgtcgcgc
      361 gagagggcgg cggccgccgc gtcggaggcc cccacctcgc cccctttcca ggccgtgcgg
      421 gactgggccc gctgcttccc catctccgcc tcgaaccccg cggtgtcgag ggcgacgccc
      481 cgctcccggc aaaggtccgc ggtcaggtcc acggggaatc cgaacgtgtc gtacagcttg
      541 aacgccacgt cgccggcgaa gacggtccgg ccgctctttc ccatgcgggc gaactcgtcc
      601 tcgaccatgc gcagccccgc gtcgagggtc tcgaggaacc gcttttcctc gtgcaccgtc
      661 accgtgtcga tgtaggcggc gctcgtcccg agctcgggat aggcggcgga gaactcccgc
      721 accaccgccg cggccacctt gtggaggaac gggccgtcga agccgatctt cttgccgtgg
      781 cgaagcgccc gccgcatgat ccggcgcagg acgtacccgc gcccctcgtt ggacgggagg
      841 atgccgtcgg cgatgaggaa cgcggtggcc cgcgagtggt ccgcgatcac ccgcatggcg
      901 gcgtcggagg ccttcgacgc gccgtacgcg gtcccgcaca tccgggcgat ctccccgatg
      961 accggccgga agaggtcggt gtcgtaattg gtcggctgtc cctggacgac cgcggcgagc
     1021 cgctcgagcc ccatcccggt gtcgatgctc ggcttcggga gcggggtctt cgtcccgtct
     1081 tcgttcgcgt tgtactgcat gaagacgagg ttccagatct cgaggaaccg gtcgcagtcg
     1141 cacccgacgg cgcacgtcgg ccgcccgcag ccggtcccct cgccctggtc gtagatgatc
     1201 tcggagcacg gcccgcacgg ccccgtgggc cccatcgacc agaagttgtc cttctcgtcg
     1261 aaccgcacga tctgggacgc cgggagcccc atcgacttgt gccagatgtc gtacgcctcg
     1321 tcgtcgtccc ggaagacgga caccgtcagg cgcgacgggt cgagccccgc ctcccgggtc
     1381 aggaaatccc agccgaagcg gatcgcgtcc ttcttgaagt agtccccgaa cgagaagttg
     1441 ccgagcatct cgaagaacgt gtggtggcgc agcgacggcc cgacgttgtc caggtcgttg
     1501 tgcttcccgc tgacgcgcat gcatttctgc gaggacgtcg cgcgggtgta gcgccgcttc
     1561 tcgcgcccga gaaagacgtc cttgaactgg ttcat
//
LOCUS       DATDDI010000065         1674 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_542269, whole genome shotgun sequence.
ACCESSION   DATDDI010000065 DATDDI010000000
VERSION     DATDDI010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542269"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..886
                     /locus_tag="VIU37_00970"
     CDS             <1..886
                     /locus_tag="VIU37_00970"
                     /inference="COORDINATES: protein motif:HMM:NF022059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HEY6012537.1"
                     /translation="AAAEEAGFLGFDVLGSGHDMTVSVRGVQGAYMLGEETVLLQALE
                     GKRGQPEQRPPYPAERGLHGMPTVVNNVQTLAAVPWIVRQGAPAFAAVGRPGATGTVL
                     VQLRTPSGIGVAEVPLGTPLRRIVELGGAMPAGRSIKAVLVGGPSGGLLPAEQLDTPY
                     DFESLRAAGAHLGSGSVVVADDRACVVDLARLLTRFCASEACGKTIPCRIGTRRLVEI
                     ADRVAEGRPRPTDTTVLADLSADIVASALCDHERLTTLPLASGMRYFRSELDEHLLRS
                     SCPAGVCHPIAVAAAAIP"
     gene            896..>1674
                     /locus_tag="VIU37_00975"
     CDS             896..>1674
                     /locus_tag="VIU37_00975"
                     /inference="COORDINATES: protein motif:HMM:NF026042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY6012538.1"
                     /translation="MTDLLTRPDAAGPATAPESLAERLLDTQSPQRPQSSPRIRIEVD
                     GKVIEGFEGQTILEVCRDNGIEIPTLCYEPKLPGFGACRMCVVEVEGEEHPPISCSRT
                     CEPEMKIQTQTEELRRLRRTNLELIFSDHNAYCLPPCQNKCPSHIDIPGFLKANAEAD
                     WRESARIFKRTIPFPSVLGRVCPAPCEEHCRRDEVDEAIAIRDSHRYAGDMVIKSMLD
                     EDQDPPIPFEQQPATGRRAAVIGSGPAGMAAAYYLLLSGHEV"
BASE COUNT          240 a          633 c          571 g          230 t
ORIGIN      
        1 cgcggccgcg gaagaggccg gcttcctggg ttttgacgtg ctcgggtccg ggcacgacat
       61 gaccgtctcg gtccgcggcg tccagggcgc ctacatgctc ggcgaggaga ccgtcctgct
      121 ccaggcgctc gagggcaagc gcggccagcc cgagcagcga ccgccctacc cggccgagcg
      181 cggcctgcac ggcatgccga cggtcgtcaa caacgtccag accctggccg cggtgccgtg
      241 gatcgtccgg cagggcgccc cggcgttcgc ggcggtcggt cgcccgggtg ccaccggcac
      301 ggtcctcgtc cagctgcgga cgccgtcggg catcggcgtc gccgaggtcc cgctcggcac
      361 gccgctccgc cggatcgtcg agctcggcgg cgcgatgcca gccggccgct cgatcaaggc
      421 ggtcctcgtc gggggaccgt ccgggggcct cctcccggcc gagcagctcg acacgcccta
      481 cgacttcgag tcgctgcgcg ccgccggcgc ccatctcggc tccggatcgg tggtcgtggc
      541 cgacgatcgg gcctgcgtcg tggacctggc acggctcctc acccggttct gcgccagcga
      601 ggcgtgcggc aagacgatcc cgtgccggat cgggactcgc cggctggtgg agatcgccga
      661 tcgcgtcgcc gaaggccgtc cgcgcccgac cgacaccacc gtgctcgccg acctgtcggc
      721 cgacatcgtg gcgtccgccc tgtgcgacca cgagcggctg accaccctcc cgctggcaag
      781 cgggatgcga tacttccgat ccgagctgga cgagcacctg ctgcgcagtt cctgcccggc
      841 cggcgtctgc cacccgatcg cggtcgccgc cgcagcgatc ccataacgga cgaccatgac
      901 cgacctgctg acacgtcccg acgccgccgg ccccgcgacc gcccccgagt cgctcgctga
      961 acgcctgctc gacacgcagt cgccgcaacg accgcagtcg tcgccgcgga tccggatcga
     1021 ggtcgacggg aaggtcatcg agggcttcga gggccagacg atcctcgagg tctgccgcga
     1081 caacgggatc gagatcccga cgctctgcta cgagcccaag ctgccgggct ttggcgcatg
     1141 ccggatgtgc gtggtcgagg tcgagggcga ggagcacccg ccgatctcct gctcgcggac
     1201 gtgcgagccc gagatgaaga tccagaccca gaccgaggag ctgcggcggc tgcggcgcac
     1261 caacctggag ctgatcttct cggatcacaa cgcctactgc ctgccgccct gccagaacaa
     1321 gtgcccgagc cacatcgaca tcccgggctt cctcaaggcc aacgccgagg ccgactggcg
     1381 cgaatccgcc cggatcttca agcggacgat cccgttcccg agcgtgctcg ggcgcgtctg
     1441 tccggccccg tgcgaggagc actgccggcg cgacgaggtg gatgaggcga tcgccatccg
     1501 cgacagccat cgctacgccg gcgacatggt catcaagtcg atgctcgacg aggaccagga
     1561 cccgccgatc cccttcgagc agcagccggc gaccggtcgc cgggcggccg tcatcggctc
     1621 gggccccgcg ggcatggccg ctgcctacta cctgctcctg tcgggccacg aggt
//
LOCUS       DATDDI010000066         3004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_271641, whole genome shotgun sequence.
ACCESSION   DATDDI010000066 DATDDI010000000
VERSION     DATDDI010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271641"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..849)
                     /locus_tag="VIU37_00980"
     CDS             complement(<1..849)
                     /locus_tag="VIU37_00980"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6012539.1"
                     /translation="MQAELQPVVRPGPGLRGRLGKALPYLLLAPGLLWLAVFYVLPAI
                     QMFTYSISTGSVENGYTITLSADAYTEALNKFGKQFLNSILYGGVATVLTLLIGFPVA
                     YTIAFRGGRYKNLILFLVIAPFFTSFLIRTISWKILLGDEGPILAPLKHTLGLLPGTF
                     SILGTPIAQVAGITYNFLPFMILPLYVALEKIDIRLIEAAEDLYANRAAAFRRVTLPL
                     ALPGVFAGSLLTFIPAMGDYINAELLGTPQTRMIGNVIQNRLLIQNDYPVGSALSFIL
                     MAAILAA"
     gene            complement(869..2128)
                     /locus_tag="VIU37_00985"
     CDS             complement(869..2128)
                     /locus_tag="VIU37_00985"
                     /inference="COORDINATES: protein motif:HMM:NF024739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6012540.1"
                     /translation="MSEQSSPPRLVSRRRFVQGTAMAGFAAFLAACTGTKSSTAPSEA
                     APSQAAASEAPPSVAASTAPTEKVVTGPLKFANWPAYIDQTTEADADTGVLPAGSSKT
                     LEDFKKKYNVEVDYEEKIGDNPTFFETIRPALAGGLPTGWDLVVLTDWMAAKIIAKSW
                     AEQIDQENVPNCANNLRDALRGQTWDPNNDFHYPWQSGMTGIGYNAKTLTENKIAEPT
                     KIADLWNIPADKVTFLTEARDTFGLGLLKLGIDPDPAKVTGDDLKKVADDMQPLVDKG
                     LRFTGNEYLQDFGQKKVWAAFVWSGDLASSGGEDDKFAFPEEGTMIWTDNMLMPKGAV
                     NKYTAELMMNWVYDPGIAAQIADYVYYVSPVKGADEKIKALDPGAESNPLLFPTADIV
                     AKQKNFQFLSDDLEKTLNDLFATLSGL"
     gene            complement(2162..>3004)
                     /locus_tag="VIU37_00990"
     CDS             complement(2162..>3004)
                     /locus_tag="VIU37_00990"
                     /inference="COORDINATES: protein motif:HMM:NF019998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012541.1"
                     /translation="TIYENVAFGLRRKGVKDAEIKSRVTEMLKLVELPGYEARKPTQI
                     SGGQAQRVALARALINRPAVLLLDEPLGALDLKLRKQMQVELKRIQQEVGITFIYVTH
                     DQEEAMTMSNRIAVMNQGHYEQLGEPEALYERPTTRFVAGFLGVSNLLPGTVRGIDGS
                     YASVTLADDTTVRAPRALVGDDATVHVGVRPEKIRLHDEAAEPPAGHNHLQGVVRDAS
                     YLGVSTQYLVEARGGAQIMVYEQNVERATKSELWAPGEAVQLTWSPDHTFVVRDAPSQ
                     PTAA"
BASE COUNT          439 a          950 c         1077 g          538 t
ORIGIN      
        1 tgcggccagg atcgcggcca tcaggatgaa cgacagggcg gagcccaccg ggtagtcgtt
       61 ctggatcagc agccggttct ggatgacgtt gccgatcatg cgcgtctggg gcgtgcccag
      121 cagctcggcg ttgatgtagt cgcccatggc cgggatgaac gtcagcagcg agccggcgaa
      181 gacgccgggc agcgccagcg gcagcgtgac gcggcggaag gcggccgcgc ggttcgcgta
      241 caggtcctcg gcggcctcga tcagccggat gtcgatcttc tcgagggcca cgtacagggg
      301 caggatcatg aacggcagga agttgtaggt gatcccggcg acctgggcga tcggtgtccc
      361 gaggatgctg aacgtgccgg gcagcagccc gagggtgtgc ttgagcgggg ccaggatcgg
      421 cccttcgtcg ccgagcagga tcttccagct gatcgtccgg atcaggaagc tggtgaagaa
      481 cggggcgatc accaagaaca ggatcagatt cttgtagcgg ccgccgcgga aggcgatcgt
      541 gtacgccacc gggaagccga tcaggagggt gaggacggtc gccacgccgc cgtacaggat
      601 cgagttgagg aactgcttgc cgaacttgtt gagcgcctcg gtgtacgcgt cggcggacag
      661 cgtgatcgtg tagccgttct cgacggaccc cgtcgagatc gagtaggtga acatctggat
      721 cgccggcagg acgtagaaga cggcgagcca gagcaggccg ggagccagca gcaggtacgg
      781 caacgccttg ccgagccggc cccggagacc ggggccgggt cggactactg gctgcagttc
      841 cgcctgcatc gcggttccga cggcgcgcct agaggccgga gagcgtcgcg aacaggtcgt
      901 tcaaggtctt ctcgaggtcg tccgacagga actggaagtt cttctgcttg gcgacgatgt
      961 ccgcggtcgg gaacaggagc gggttgctct cggcacccgg gtcgagcgcc ttgatcttct
     1021 cgtcggcgcc cttgaccggc gagacgtagt agacgtagtc ggcgatctgg gcggcgatgc
     1081 ccgggtcgta gacccagttc atcatcagct cggcggtgta cttgttcacc gcgcccttgg
     1141 gcatgagcat gttgtcggtc cagatcatcg tgccctcttc ggggaaggcg aacttgtcgt
     1201 cctcgccacc tgaggaggcg aggtcgccgg accacacgaa cgccgcccag accttcttct
     1261 ggccgaagtc ctggaggtac tcgttgccgg tgaagcggag gcccttgtcg accagcggct
     1321 gcatgtcgtc ggcgaccttc ttgaggtcgt cgccggtcac cttggcaggg tcggggtcga
     1381 tcccgagctt gagcagcccg agcccgaacg tgtcgcgcgc ctcggtcagg aaggtgacct
     1441 tgtcggccgg gatgttccac aggtcggcga tcttggtcgg ctcggcgatc ttgttctcgg
     1501 tcagggtctt ggcgttgtag ccgatcccgg tcatgcccga ctgccacggg tagtggaagt
     1561 cgttgttcgg gtcccacgtc tggccgcgca gcgcgtcgcg caggttgttg gcgcagttgg
     1621 ggacgttctc ctggtcgatc tgctcggccc agctcttggc gatgatcttg gccgccatcc
     1681 agtcggtcag gacgaccagg tcccagccgg tcggcagtcc gccggcgagg gccgggcgga
     1741 tggtctcgaa gaaggtcggg ttgtcgccga tcttctcctc gtagtcgacc tcgacgttgt
     1801 acttcttctt gaagtcctcg agcgtcttcg acgagccagc cggaaggacg ccggtgtcgg
     1861 cgtccgcctc ggtcgtctgg tcgatgtagg ccggccagtt ggcgaacttg agcgggccgg
     1921 tcacgacctt ctcggtcggt gccgtggacg ccgccaccga cggcggggcc tcggatgcgg
     1981 ccgcctggct cggagccgcc tcgctcgggg cggtgctcga cttggtcccg gtacaggccg
     2041 ccaggaacgc ggcgaaccct gccatcgccg tgccctggac gaagcgccgg cgcgacacca
     2101 gtcgcggcgg ggacgattgc tcgctcatgt gcctcctcga tgctcttccg gggtcagcgg
     2161 ctcaggcggc cgtcggctgg ctcggcgcgt cgcggaccac gaacgtgtga tccggcgacc
     2221 aggtcagctg gacggcctcg ccgggggccc acagctcgga cttggtggct cgctcgacgt
     2281 tctgttcgta gaccatgatc tgcgcacctc cccgcgcctc gaccaggtac tgcgtgctga
     2341 cgccgagata cgaggcgtcg cggacgacgc cctgcagatg gttgtggccg gcggggggct
     2401 cggccgcctc gtcatggagg cggatcttct cgggccggac gcccacgtgc accgtggcgt
     2461 cgtcgccgac gagggcccgc ggggcgcgga cggtggtgtc gtccgcgagg gtgaccgacg
     2521 cgtacgagcc gtcgatcccg cggaccgtgc cggggagcag gttgctgacg cccaggaagc
     2581 ccgccacgaa gcgcgtggtc ggacgctcgt agagcgcctc gggctcgccg agctgctcgt
     2641 agtggccctg gttcatcacc gcgatgcgat tcgacatcgt catcgcctct tcctggtcgt
     2701 gggtcacgta gatgaacgtg atcccgacct cctgctggat ccgcttgagc tcgacctgca
     2761 tctgcttgcg cagcttcagg tccagcgcgc cgagcggctc gtccaggagc agcacggccg
     2821 ggcggttgat cagcgcccgg gcgagcgcca cccgctgggc ctgcccgccc gagatctggg
     2881 tcggcttgcg ggcctcgtag cccggcagct ccacgagctt gagcatctcg gtgacgcgcg
     2941 acttgatctc cgcgtccttg acgcccttcc gccgcagccc gaaggccacg ttctcgtaga
     3001 tcgt
//
LOCUS       DATDDI010000067         3196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_417344, whole genome shotgun sequence.
ACCESSION   DATDDI010000067 DATDDI010000000
VERSION     DATDDI010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417344"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..937)
                     /locus_tag="VIU37_00995"
     CDS             complement(<1..937)
                     /locus_tag="VIU37_00995"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6012542.1"
                     /translation="MTSLRSSLRATTLARSIPRTDYAQGVAYATAAGVAFGTLGPLSN
                     IAYAAGMTSPTFAALRATIGAAVLALILLPKRSECVPLVRLRTLDRALLALTAVAQAA
                     LSLSIFAAYATMAVAPVLAVYFCYPLLVAGASIALGRERLTKTRAVALGVALAGLIAV
                     VFGGAGVSGRVTVVGLVLAALAAGCQATYLVVSRNGFTRVPSQQATAIILAVAAVLMW
                     LVAAPIELGSARAGEWLPSPTVWVAVAIVGVLGAALAKVWLLRGVRRVGGTRAAVLML
                     AEPVSGVILAGILLGQGLTIPQLAGGIAVMIGALLA"
     gene            complement(1049..1249)
                     /locus_tag="VIU37_01000"
     CDS             complement(1049..1249)
                     /locus_tag="VIU37_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012543.1"
                     /translation="MPYQREAAIVLEMWRDIERKLSSVATDSEEAEELQAEAARLRNE
                     YQRLIDEATKYHRPVPPPLPSE"
     gene            complement(1341..1811)
                     /locus_tag="VIU37_01005"
     CDS             complement(1341..1811)
                     /locus_tag="VIU37_01005"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6012544.1"
                     /translation="MPRFEDSIEVDVPARIAYDQWTQFEEFPSFMEGVKRVVQRDDKT
                     LEWTAEIAGQRKEWVAEITDQTPMTRIAWKSVAGDENAGAVLFEPLGPDRTKVTLKLD
                     ADPQGPVETIGANLGFLERRVKGDLERFKTFIESRRVPTGAWRGEIHGDRVTGD"
     gene            complement(1921..>3196)
                     /locus_tag="VIU37_01010"
     CDS             complement(1921..>3196)
                     /locus_tag="VIU37_01010"
                     /inference="COORDINATES: protein motif:HMM:NF025627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arylsulfotransferase family protein"
                     /protein_id="HEY6012545.1"
                     /translation="GLIFLTPGNGAGVDGPLIVDAGGEPVWVGPDSKQTVVGLGVVTV
                     DGTPALCWWEGENNNGIGSGEYVFADATYRVTRRLRGASGAKVDLHELRLTANGTALL
                     FVAEPLKTDRATGRALSPPVLDCVVQEIDLATGALRFEWHSADHVDPAESFAEPPTKA
                     DTVYDYVHANAIDVDADGHLLVSARNTSAIYKVDRASGEVIWRMGGKRSDFAIAADAA
                     FAWQHDVRRRPDGTLTVFDNAHGAADDTSGHPSRAIVLETDERAMTVRLVQEYPHPTP
                     LIASSQGNVQLLPNGDLFVGWGSTPWFTEFAPSGDTVFDATFPAAKQSYRALRFPWSG
                     RPVEPPAAAVERVSTGSLRVHASWNGHTGVATWEVLAGPSVSALRPVASAERTGFETV
                     IEAVTDEPLIAVRARDAAGTELGVTDPVAAPA"
BASE COUNT          465 a         1146 c         1139 g          446 t
ORIGIN      
        1 gcgccagcag cgcaccgatc atgaccgcga tcccacccgc cagctgcggg atcgtcagcc
       61 cctggcccag caggatcccc gcgaggatca ccccgctgac cggctcggcg agcatgagca
      121 ccgccgcacg ggtcccaccg acgcggcgga cgccgcgcag gagccagacc ttcgccaggg
      181 cggcaccgag gactcccacg atcgcgaccg cgacccagac cgtcggtgac gggagccact
      241 caccggcgcg ggcggatccg agctcgatcg gcgcggccac cagccacatc aggacggcgg
      301 ccacggccag gatgatcgcc gtcgcctgtt gcgacggtac ccgggtgaat ccgttgcgcg
      361 ataccacgag ataggtcgcc tggcagcctg cggcgagggc ggcaaggacc aggccgacca
      421 ccgtgacccg accggacacg ccggccccgc cgaacacgac ggcgatgagc ccggcaaggg
      481 cgacgccgag cgcgacggcc cgcgtcttcg tgagccgctc gcgcccgagg gcgatcgacg
      541 caccggccac gaggagcggg tagcagaagt agaccgccag gacgggcgcg acggccatcg
      601 tggcgtaggc cgcgaagatg gacagcgaga gcgccgcctg ggccacggcg gtcaacgcca
      661 ggagggcgcg gtcgagcgtg cgcagtcgta cgagcggcac gcactccgaa cgcttgggca
      721 ggaggatcag cgccaggacc gcagccccga tcgtcgcccg cagggcggca aacgtcgggc
      781 tggtcattcc ggccgcatag gcgatgttgc tgagcggtcc gagcgtcccg aacgcgacgc
      841 ccgcggccgt cgcgtaggcc acgccctggg catagtccgt gcgcgggatg gagcgcgcca
      901 gcgtcgtggc gcgcaggctt gaccggaggc tcgtcattcg gtccgagtgt cgatgccggc
      961 gacgactcgg gtcacgtgcc gagcgggccg ttcaggcggt ccgttcggca gccgccgacg
     1021 ggcgcggccc gcccgtcggc accgtgcgtc attcgctggg cagcggcggc ggcaccggac
     1081 ggtggtactt cgtcgcctcg tcgatcaggc gctggtactc gttccggagg cgcgcggcct
     1141 cggcctggag ctcctcggct tcctcgctgt cggtggcgac gctggagagc ttgcgctcga
     1201 tgtcgcgcca catctcgagg acgatggcgg cttcacgctg gtacggcacg gaacctcacg
     1261 atcgcatgtc ccgaacaggg gcagcatagc ccccggtcga gccatcgcga gcggtcgtcg
     1321 gcgatcgccg ccccggccgg tcagtcgccg gtcacccggt ccccgtggat ctcgccacgc
     1381 caggcaccgg tcggcacgcg acgcgactcg atgaacgtct tgaaccgctc gaggtcgccc
     1441 ttgacccgtc gctccaggaa cccgaggttg gccccgatcg tctcgaccgg cccctgggga
     1501 tcggcgtcga gcttgagcgt gaccttggtg cggtccgggc cgagcggctc gaacaggacg
     1561 gccccggcgt tctcatcgcc ggcgacgctc ttccaggcga tccgcgtcat cggcgtctgg
     1621 tcggtgatct ccgcgaccca ttccttgcgc tgcccggcga tctcggcggt ccattccagc
     1681 gtcttgtcgt cacgctggac cacgcgcttg acgccttcca tgaagctcgg gaactcctcg
     1741 aactgcgtcc actggtcgta ggcgatccgg gcgggcacgt cgacttcgat cgaatcttcg
     1801 aaacggggca tggcagacct ccatcggcaa tgtcggggtt ggtccatcga gggtggcatg
     1861 gggcgcgcgg cggcttcgcg gtccgcccgg cgtcccgcgt tgcagtcgcg cgacagcgtc
     1921 tcaggccggt gcggccaccg ggtcggtgac gcccagctcg gtccctgcgg catccctcgc
     1981 gcgcaccgcg atcagcggct cgtcggtcac cgcctcgatg acggtctcga acccggtccg
     2041 ttcggccgac gcgaccggcc gcagggccga caccgacgga ccggcgagga cttcccaggt
     2101 cgccacgccg gtgtgaccgt tccagctcgc atgcacgcgc agcgaaccgg tcgatacccg
     2161 ctcgacggcc gcagcgggcg gctcgaccgg ccgcccggac cagggaaagc ggagcgcgcg
     2221 atacgactgc ttcgcggccg ggaacgtcgc gtcgaagacg gtgtcgccgc tcggcgcgaa
     2281 ctcggtgaac cacggcgtgc tgccccagcc gacgaacagg tcgccgttcg ggagcagctg
     2341 gacgttgccc tggctcgagg cgatgagcgg ggtcgggtgg gggtactcct ggacgagccg
     2401 gaccgtcatc gcccgctcgt cggtctccag gacgatcgcc cgcgacggat gaccggacgt
     2461 gtcgtcggcc gccccgtggg cgttgtcgaa gaccgtgagc gtcccgtcgg gacggcgacg
     2521 gacgtcgtgc tgccatgcga acgccgcatc cgcggcgatc gcgaaatcgc tgcgcttgcc
     2581 gcccatccgc cagatgacct cgccgctggc gcgatcgacc ttgtagatgg ccgaggtgtt
     2641 ccgcgccgag acgagcaggt gaccgtcggc atcgacatcg atggcgttcg cgtggacgta
     2701 gtcgtacacg gtgtcggcct tggtgggtgg ttcggcgaac gattccgccg gatccacgtg
     2761 gtcggcgctg tgccactcga agcggagcgc cccggtggcg aggtcgatct cctgcacgac
     2821 gcaatccagg accggcgggg acagggcacg cccggtggcg cgatccgtct tgagcggctc
     2881 ggccacgaac agcagggcgg tcccgttggc ggtcagacgc agctcgtgca ggtcgacctt
     2941 ggcgccactc gcgccgcgca gccgccgggt cacccggtag gtcgcgtccg cgaacacgta
     3001 ctcgcccgag ccgatgccgt tgttgttctc gccctcccac cagcacaacg ccggggtgcc
     3061 gtccacggtc acgacgccca ggccgaccac cgtctgcttc gagtccgggc ctacccagac
     3121 cggctcgccg ccggcgtcga cgatcagggg cccgtcgacc ccggcgccgt tgccgggcgt
     3181 caggaagatg agtccg
//
LOCUS       DATDDI010000068         2101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_84364, whole genome shotgun sequence.
ACCESSION   DATDDI010000068 DATDDI010000000
VERSION     DATDDI010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84364"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VIU37_01015"
     CDS             <1..291
                     /locus_tag="VIU37_01015"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEY6012546.1"
                     /translation="PDASNAMATVLLPRSLLALFPGVERRHDVAGSTVAAVIAALDGT
                     VPGLRDRLVEAGPRLRPHINVFVDGSPASLDSPVAPEAVIHVIPAVSGGSSG"
     gene            complement(288..1874)
                     /locus_tag="VIU37_01020"
     CDS             complement(288..1874)
                     /locus_tag="VIU37_01020"
                     /inference="COORDINATES: protein motif:HMM:NF020610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine 5,6-aminomutase subunit alpha"
                     /protein_id="HEY6012547.1"
                     /translation="MTEPWGPTDRLLDAAEALAGAWGGRARACTTAGQERAILRLFGV
                     HGLDSSGAPLAGSVVNRWLAGEPQALASGIALPFAMAMLEYDQEPQQLARDVASGAVD
                     LALETALLREPDRRAVAEIEASRLTSAAIERIDAERTVRHETMSVLGDPPRPWLGVTL
                     RQPDEDLAIDEAAALVADGLDLIRIEVPIGRELAGRLSAAGRDVPEWHPREGARGAAS
                     REPADPAPIGSQRALATLRAIVDRAAAERGAYVRLATVLPSLAAPEGAVVAGFERIDL
                     IASDVVAEIVAGGVEPERALADHAFAHRLLARAGTLMMVGPGPLVVAPDLSAGLPSDP
                     ATRAGRALALQLIGVALARGDGLPAEQIIIDPIPPWLTGEPEPAAHAIAEVAVRRVLF
                     AGHPFGFVQPPSDDAGALWGYLQAAATVHAGDVAIVIGRLDATGREAWPADIRAGALV
                     GREVAAATPPGTLTGSALVHARAVVSAAAATLDGLAHQGWRTVTGDSPGDGRGARGPQ
                     TIAERTETFDPFEAALGRRR"
BASE COUNT          245 a          814 c          792 g          250 t
ORIGIN      
        1 cctgacgcct ccaacgccat ggcaaccgtg ctgctccccc gatccctgct cgcgcttttc
       61 ccgggcgtcg agcgccgtca tgacgtcgcg ggctcgaccg tcgccgcggt gatcgcggcc
      121 ctcgacggga cggtcccggg cctgcgcgac cggctcgtgg aagccggacc tcgtctccgc
      181 ccgcacatca acgtgttcgt ggacggctcg cccgcgtcgc tcgattcccc ggtggcgccc
      241 gaggcggtga tccacgtcat cccggccgtg tcgggcggat cgtccggcta gcggcggcgg
      301 cccagggcgg cttcgaacgg gtcgaacgtc tccgtccgct cggcgatcgt ctgcggcccg
      361 cgggctcccc tcccgtcgcc gggcgagtca ccggtgacgg tgcgccagcc ctggtgcgcg
      421 agcccgtcga gcgtggcggc ggcagcgctg accacggccc gggcgtggac gagcgccgag
      481 ccggtcaggg tgccgggcgg ggtcgcggcc gcgacctcgc ggccgaccag ggcacccgcc
      541 cggatgtcgg ccggccacgc ctcccggccg gtcgcgtcga gccggccgat cacgatcgcc
      601 acgtccccgg cgtgcacggt ggcggccgcc tggaggtagc cccacagtgc gcccgcgtcg
      661 tcggatggcg gctggacgaa gccgaacggg tgccccgcga agagcacccg gcgcacggcg
      721 acctcggcga tggcgtgggc ggccggctcg ggctcgccgg tcagccacgg cgggatgggg
      781 tcgatgatga tctgctcggc cggcaggccg tcgccccggg ccagggccac gccgatcaac
      841 tgcagcgcca gcgcacgacc cgcgcgcgtc gccggatcgg acggcaaacc agccgacagg
      901 tcgggcgcca cgaccagggg gcccggcccg accatcatca gcgtccccgc ccgggcgagc
      961 agccggtggg cgaaggcatg gtcggccagg gcgcgctcag gttcgacgcc gccggccacg
     1021 atctcggcga cgacatcgga ggcgatgagg tcgatccgct cgaacccggc gaccaccgcg
     1081 ccctccgggg cggccagcga cgggagcacc gtcgcgagcc gcacgtaggc cccccgttcg
     1141 gccgcggcgc gatcgacgat cgcgcgcaac gtcgccaggg cgcgctggct gccgatcggc
     1201 gccgggtcgg caggctcgcg gctcgccgcc cctcgcgcgc cctcgcgcgg gtgccattcc
     1261 gggacgtcgc ggcccgcagc gctcagccgg cccgccaact cccggccgat cggcacctcg
     1321 atccggatga ggtccagccc gtcggcgacc aaggcggcgg cctcgtcgat cgcgaggtcc
     1381 tcgtcgggct gccggagcgt cacgccaagc cagggccgcg gcgggtcgcc aagcaccgac
     1441 atcgtctcgt ggcggaccgt ccgctcggcg tcgatccgct cgatcgccgc gctcgtcagc
     1501 cggctcgcct cgatctcggc cacggcgcga cggtccggct cccggaggag ggccgtctcg
     1561 agggccaggt cgaccgcccc ggacgccacg tcgcgcgcca gctgctgcgg ctcctggtcg
     1621 tactcgagca tggccatggc gaacggcagc gcgatcccgg aagccagcgc ctgcggctcg
     1681 ccggcgagcc agcgattgac gacgctgccc gccagcgggg cgccgctgga atcgagcccg
     1741 tgaacgccga acaggcgaag gattgcgcgc tcctggccgg cggtcgtgca ggcacgagcg
     1801 cggccccccc aggcgcccgc gagcgcctcg gccgcgtcga gcaggcggtc ggtgggaccc
     1861 cagggttcgg tcatgggcga cggtcgcgcg agcggaggcg gcggtatggc ggtgccggca
     1921 cgcgcacagt atggcgcgcc cgatcgctgc cgaggtcagc ccggcggttc cgtcccgcgg
     1981 gcgggcccgg ccgccgcatc ccggcccgtg ccgtcgtccg gacgggggtc gtcgtccggg
     2041 ccggtccttg cctggtggcc gatccagacg tggccgtcgg cgaaccgctc ggctttccag
     2101 a
//
LOCUS       DATDDI010000069         1833 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_230102, whole genome shotgun sequence.
ACCESSION   DATDDI010000069 DATDDI010000000
VERSION     DATDDI010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230102"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1375
                     /locus_tag="VIU37_01025"
     CDS             <1..1375
                     /locus_tag="VIU37_01025"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEY6012548.1"
                     /translation="CKDGDPQRAIEAIRVAERPHLHVFIATSDIHLKHKLRIDRETAL
                     AEAVRWVRHGREQLGRDAEIEFSAEDASRTDPDFLMQVYEAVVDAGASTVNIPDTVGY
                     AIPAEFGILVKRVVDLVGSHATVSVHCHNDLGLATANTMAAVQAGARQVEVTINGLGE
                     RAGNASLEEVVMALRTRPTQFPDLASGVATEQLTAASRLVSYLTGFAVQPNKAIVGGN
                     AFAHESGIHQDGVIKNPLTYEIMTPQSVGLTGSQLTIGKLSGRRGLQSKLKELGHLLE
                     GEALDEVYRQAVALADAKKEVTDNDLLALVEHRSSEVPASVALIGWSVTSSRGGNATG
                     TVSLTVDGQERTAETTGNGPVNALFSAVDAALQPVLHWHPTLTEYEIKAVSAGEDAQG
                     QALVRCRRSSDEGPGALVVTGHGLSTNIIEASLDAYIVAVNKLHGAEINGVKVAFVSP
                     REGERLP"
     gene            1372..>1833
                     /locus_tag="VIU37_01030"
     CDS             1372..>1833
                     /locus_tag="VIU37_01030"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6012549.1"
                     /translation="MTEGARYRIAVIPGDGVGPEVVAAARRVLEGTQHGMGAYTESKG
                     YRFVREAIAEFIHARDGIAADPEAIYLTDGASKGVQSVLRLLIADGHDGIMIPIPQYP
                     LYSATITLYGGTAVPYHLLENAEWKLSREVLDGALAAAKAKGIRPRAVCVIN"
BASE COUNT          297 a          666 c          631 g          239 t
ORIGIN      
        1 ctgcaaggac ggcgacccgc agcgcgccat cgaggcgatc agggtcgccg agcgaccgca
       61 tctccacgtc ttcatcgcga ccagcgacat tcacctgaag cacaagctgc ggatcgaccg
      121 tgaaaccgcg ctcgccgagg cggtgcgctg ggtgcgccac gggcgcgaac agctgggacg
      181 cgacgccgag atcgagttct ccgccgagga cgcgtcgcgg accgacccgg acttcctgat
      241 gcaggtctac gaggcggtcg tcgacgccgg cgcgtccacg gtcaacatcc ccgacaccgt
      301 cggctacgcg atcccggccg agttcgggat cctggtcaag cgggtcgtgg acctggtcgg
      361 ctcgcacgcc acggtcagcg tccactgcca caacgacctg ggcctcgcca cggccaacac
      421 gatggccgcc gtccaggccg gcgcgcggca ggtggaggtc acgatcaacg ggctcggcga
      481 gcgggccggc aacgcctcgc tcgaggaggt cgtgatggcg ctgcggaccc ggccgacgca
      541 gttcccggac ctcgcctcgg gcgtggccac ggagcagctc accgcggcca gccgcctggt
      601 gagctacctg accgggttcg ccgtccagcc gaacaaggcg atcgtcggcg gcaacgcgtt
      661 cgcccacgaa tcgggaatcc accaggacgg cgtgatcaag aacccgctga cctacgagat
      721 catgaccccg cagtcggtgg ggctgaccgg cagccagctg acgatcggca agctgtccgg
      781 ccggcgcggg ctccagagca agctcaagga gctcggtcac ctgctggagg gcgaggcgct
      841 cgacgaggtc tatcgccagg cggtcgccct cgccgacgcg aagaaggagg tcaccgacaa
      901 cgacctgctc gcgctcgtcg agcaccgctc gtcggaggtt cccgcgtcgg tcgcgctgat
      961 cggctggagc gtgacctcgt cgcgcggcgg caacgccacc ggcacggtca gcctgactgt
     1021 ggacggccag gagcgtacgg ccgagacgac cggcaacggg ccggtcaacg ccctcttctc
     1081 cgcggtcgac gccgccctgc agccggtcct ccactggcac ccgacgctga ccgagtacga
     1141 gatcaaggcg gtcagcgccg gcgaggacgc ccagggccag gccctcgtcc gctgccgtcg
     1201 ctcgtccgac gagggtcccg gcgcgctggt cgtcaccggc cacgggttgt cgacgaacat
     1261 catcgaggcc tcgctcgacg cgtacatcgt ggccgtcaac aagctccacg gcgcggagat
     1321 caacggcgtc aaggtcgcgt tcgtctcgcc gcgtgaaggc gagcggcttc catgacggag
     1381 ggcgcccgct atcggatcgc ggtcatcccc ggcgacggcg tcgggccgga ggtcgtggcc
     1441 gccgcccggc gcgtcctcga ggggacgcag cacggcatgg gcgcctacac cgagagcaag
     1501 ggctaccgct tcgtccgcga ggcgatcgcc gagttcatcc acgcgcgcga cgggatcgcc
     1561 gcggatccgg aggccatcta cctcaccgac ggcgcctcga agggcgtcca gtcggtgctg
     1621 cgcctcctga tcgccgacgg ccacgacggg atcatgatcc cgatcccgca gtacccgctc
     1681 tactcggcga ccatcacgct ctacggcggg acggcggtcc cctaccacct gctcgagaac
     1741 gcggagtgga agctgtcccg cgaggtgctc gacggcgcgc tcgccgccgc gaaggcgaag
     1801 gggatccgcc cccgcgccgt ctgcgtcatc aac
//
LOCUS       DATDDI010000070         2229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_354874, whole genome shotgun sequence.
ACCESSION   DATDDI010000070 DATDDI010000000
VERSION     DATDDI010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354874"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            270..1934
                     /locus_tag="VIU37_01035"
     CDS             270..1934
                     /locus_tag="VIU37_01035"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HEY6012550.1"
                     /translation="MQAAIGSSDRPPDRPPVVLPHPVRMRVLGAVMVAVFLGALDQTV
                     VGTALPRIITDLGGNGLYTWAFTAYLLTATISGPLYGKLSDLFGRRPIFLFGIGLFMV
                     GSILAGLSREMWELVGARGVQGLGAGALFPVAMATIADLFAPSERGRYQGLFGAVFGL
                     SSLVGPAIGGLITDTIGWPFVFFVNLPVGAFVLLTVRRYLPSYHEAGRRPRIDYAGAA
                     LFTAALVPILVGLTNKSSAEWGDPAVGGLIGLGLVILAAFVWVESRAAEPIVPLALFR
                     NRAFTVSVASVFLASFGFFAAVVFLPRWYQVVGGASATVSGYEMLPLLGGVILSAIAS
                     GQILARTGRHRTLIFTALVVLAAGLSAMTQLRVDTPLPMLWAWMFVTGLGMGPVFSVF
                     PLVVQNSVPVRQIGAATSNLSFFQQVGGSVGLAITGTLFATSITRELPAAMASAGVPP
                     QVSGSLAGAGGLQALTGVGNAGAAMLSTLPAGVRTLVEPYLPGIIGAVHSAFSIAAAS
                     TFTVGIGTTVVAAGLVLLFREAPARAYASAPADERATDDDLEVAAA"
BASE COUNT          258 a          768 c          808 g          395 t
ORIGIN      
        1 cgcgtggacc ggatagccaa ggtcgcgcag ccgttcgatg tcgttgcgga cggtgcgcgg
       61 gctgacctcg agtcgctggg cgagctccga cccggtccag tcgcgtggcg tctggagcag
      121 ggagagcaac cggaggagcc gtgccgaggt actcatgagc aacgagaatc tagcagatca
      181 ttaggcaaga attcgaccta atcagcggat agggttcggg acatcaaccc cccatcgagc
      241 tgtgaggtgc tccggtgtcc cacgaagcca tgcaagcagc gatcggatcg tcggatcggc
      301 cgcccgatcg gccgccggtc gtgctccccc accccgtccg aatgcgcgtc ctcggcgcgg
      361 tcatggtcgc cgtcttcctc ggcgccctcg accagaccgt ggtcgggacg gccctcccga
      421 ggatcatcac cgacctcggc ggcaacggcc tctacacctg ggcgttcacc gcctacctgt
      481 tgacggcgac gatcagcggt ccgctgtacg gcaagctgtc cgacctgttc ggccggcgac
      541 cgatcttcct gttcgggatc ggcctgttca tggtcggttc gatcctcgcg gggctgtcac
      601 gcgagatgtg ggagctggtc ggggctcgcg gcgtccaggg tctcggcgca ggcgcgctgt
      661 tcccggtcgc catggcgacg atcgccgacc tgttcgcgcc gtcggagcgc gggcgctatc
      721 agggcctgtt cggcgcggtc ttcggactgt ccagcctggt cgggccggcg atcggcggct
      781 tgatcaccga cacgatcggc tggcccttcg tcttcttcgt caacctgccg gtcggggcct
      841 tcgtgctcct gaccgtccgg cgctatctcc cgagctacca cgaggccggc cggcggccgc
      901 ggatcgacta tgcgggcgcc gcgctgttca ccgccgcgct cgtgccgatc ctcgtcgggc
      961 tcaccaacaa gtcctcggcg gagtggggcg atccggccgt cggcggcctg atcggactcg
     1021 ggctggtcat cctcgccgcg ttcgtctggg tcgagtcgcg ggcggccgag ccgatcgtcc
     1081 cgctcgcgct gttccggaac cgtgcgttca ccgtctcggt ggcctcggtg ttcctggcgt
     1141 cgttcgggtt cttcgcggcg gtcgtgttcc tgccgcgctg gtaccaggtc gtcggcggtg
     1201 cgtcggcgac ggtctcgggc tacgagatgc tgccgctcct tggcggggtc atcctgagcg
     1261 ccatcgcgtc ggggcagatc ctggcccgaa ccgggcgaca ccggacgctg atcttcacgg
     1321 cgctcgtcgt gctggcggcc gggctgtcgg cgatgaccca gctgcgggtg gacacgccgc
     1381 tgccgatgct gtgggcgtgg atgttcgtga ccggcctcgg catgggcccg gtgttctcgg
     1441 tcttcccgct ggtcgtccag aacagtgttc cggtccgtca gatcggtgcg gcgacgagca
     1501 acctgtcgtt cttccagcag gtcggcggct cggtcggtct cgcgatcacg gggacgctgt
     1561 tcgcgacctc gatcacgcgc gagcttccgg cggccatggc gtcggccggt gtgccgccgc
     1621 aggtctcggg gtcgctcgcc ggggcgggtg gcctgcaggc cctgaccggc gtgggcaatg
     1681 ccggagccgc gatgctctcg acgctgccgg ccggcgtgcg cacgctcgtc gagccgtacc
     1741 tgccggggat catcggcgcc gtccactcgg cgttctcgat cgcggcggcg agcaccttca
     1801 cggtcgggat cggaaccacc gtcgtggcgg caggactcgt cctgctcttc cgagaggcgc
     1861 ctgcccgggc gtacgcgtcc gccccggcgg acgagcgggc caccgacgac gacctggagg
     1921 tcgcggcggc ctgatcgcgt cggacaacgc gatcgcggtc ctgtgccggg gcgccgtctg
     1981 gcgtcccggc accgcgatgt ccagcccgag ggcgtggctg ccgcctgtgc cgcgaagctg
     2041 gagcaacccc cgccggcagg accgccacaa tctgcgcgtg cctggcgtcc tgtgggctga
     2101 agggggctgg atgaaggtcg tcgccgccgt tgtcgttctg gtgctggcgg gctgttccgc
     2161 gagcagcgcg tcgccggctg gcgaccgggg ggcagctggc acgcccccgc cggcgtcaat
     2221 gccggccga
//
LOCUS       DATDDI010000071         1889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_22000, whole genome shotgun sequence.
ACCESSION   DATDDI010000071 DATDDI010000000
VERSION     DATDDI010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22000"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..478
                     /locus_tag="VIU37_01040"
     CDS             215..478
                     /locus_tag="VIU37_01040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012551.1"
                     /translation="MARHSKHERERRSAETERVKQIEAAWLGSLPPATAKAFADSVAA
                     ARARGPQEKRPDMAPGTPPRPPRPGHEPKPPKDERPRRSSNRD"
     gene            500..1075
                     /locus_tag="VIU37_01045"
     CDS             500..1075
                     /locus_tag="VIU37_01045"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6012552.1"
                     /translation="MAANDYHFVTTWRIAATPEEITEVLGDAAGLARWWPSVYLRVRV
                     VEPGGADGLGKVVELWTKGFLPYTLRWRFTVTESDPPTGFRLDAEGDFVGRGIWTLRA
                     ELGEDDPGGPLTAVAYDWLIVAEKGILKTLSPIMKPIFSANHHWAMAQGERSLRLELA
                     RRHAGTDRAIAAAIPPPPGPTFPHNLRRRGA"
     gene            complement(1083..>1889)
                     /locus_tag="VIU37_01050"
     CDS             complement(1083..>1889)
                     /locus_tag="VIU37_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012553.1"
                     /translation="RGGSVRERGVQYRRVRDAEDGRPSRPNDSGLRFWQVLAVVGLIA
                     ATAGWTTAAVLALRPSSGPAVVAEASPSDEVLPSDEPSLEPPVESHAAADLEALLPAD
                     VNGTSLTRESWTGDTFLGDDSWSTSITSFLTTAGKTVADIQASQAYDATGTLDLSAGA
                     FRVAGVGGTELRDAIIAAYKGDYPDLKLSKKTIGGLEVTNGDFGDGSVASYWYVRDNV
                     VFDIETSDPAIAEAAFAALPAPGTTGATAAPSSIAPASAGPSETASPSPG"
BASE COUNT          276 a          697 c          667 g          249 t
ORIGIN      
        1 accggcgcgc cctcgacgag acggctcagc gccgtcgtcg cggcggagcc cgcatcgacc
       61 cagccgtcga acgccgcgat gaccgtcggc gcgatgagat ccccgggatc gtcgagggtg
      121 tagagcggca tgcacgaagg ataggcgacg atcggaacac gggcggctac actccccgag
      181 cacaacccgc cgacgatcat cgaaaggacc gaccgtggcc aggcactcca agcacgagcg
      241 cgaacgacga agcgcggaga ctgagcgcgt caagcagatc gaggccgcct ggctcggcag
      301 cctgccgccg gcgacggcga aggcgttcgc cgactcggtc gcggcggccc gcgcgcgtgg
      361 gccgcaggag aagcgacccg acatggcgcc gggcactccg ccccgtccgc cgcgcccggg
      421 tcacgagccc aagccgccca aggacgagcg gccgcgccgg tcgagcaacc gcgactgaca
      481 ctcgctcggg tcccggatcg tggccgcgaa cgactaccac ttcgtgacga cgtggcggat
      541 cgccgccacg ccggaggaga tcaccgaggt cctcggcgac gcggccggac tggcccgctg
      601 gtggccgtcg gtctacctcc gcgtccgcgt cgtcgagccg ggcggcgccg acgggctcgg
      661 caaggtggtc gagttgtgga ccaagggctt cctgccgtac acgctccgct ggcggttcac
      721 cgtcaccgaa tctgacccac cgaccgggtt ccggctcgat gccgagggcg acttcgtggg
      781 gcgcgggatc tggacgctcc gagcggagct cggcgaggac gaccccggcg ggccgctcac
      841 cgccgtggcc tacgactggc tgatcgtggc cgagaagggc atcctcaaga cgctgtcacc
      901 gatcatgaag ccgatcttct cggccaacca tcattgggcc atggcgcagg gcgagcggag
      961 ccttcggctc gagctggcgc gccgccacgc cggcacggat cgggcgatcg cggccgccat
     1021 cccgccgccg cccggaccga cgttcccgca caacctgcgc cggcgcggag cctagccggc
     1081 gctcagcccg gcgacggcga cgccgtttct gacggcccgg cggacgccgg cgcgatcgac
     1141 gacggtgccg ctgtcgcgcc ggtcgtcccc ggcgcgggca gcgcggcgaa cgccgcttcg
     1201 gcgatcgccg gatcgctggt ctcgatgtcg aagacgacgt tgtcgcggac gtaccagtag
     1261 ctggcgacgc tcccgtcgcc gaagtcgccg ttggtgacct cgagcccgcc gatcgtcttc
     1321 ttggacagct tcaggtcggg gtagtcgccc ttgtaggcgg cgatgatcgc gtcccgcagc
     1381 tcggtgccgc cgacgcccgc cacccggaag gctccggcgc tcaggtcgag cgtgccggtc
     1441 gcgtcgtagg cctgcgacgc ctggatgtcc gccacggtct tgcccgcggt cgtcaggaac
     1501 gacgtgatcg acgtgctcca gctgtcgtca cccaggaagg tgtcgccggt ccagctttca
     1561 cgggtcaggc tcgtgccgtt gacgtcggcg ggcaacagcg cctccaggtc cgcggccgcg
     1621 tggctctcga ccggcggctc gaggctcggt tcgtccgacg ggagcacctc gtccgacggt
     1681 gacgcctccg ccacgaccgc gggtccggac gagggacgca gggcgagcac cgcggccgtg
     1741 gtccaaccgg ccgtcgccgc gatcagtccg acgaccgcca ggacctgcca gaacctgagg
     1801 ccgctgtcgt tcggccgcga cgggcgaccg tcctcggcat cgcgcacccg tcgatactgc
     1861 acccctcgtt ctcgcacgga acctcctcg
//
LOCUS       DATDDI010000072         4553 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_126118, whole genome shotgun sequence.
ACCESSION   DATDDI010000072 DATDDI010000000
VERSION     DATDDI010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4553
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126118"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1180
                     /gene="hutU"
                     /locus_tag="VIU37_01055"
     CDS             <1..1180
                     /gene="hutU"
                     /locus_tag="VIU37_01055"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR01228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HEY6012554.1"
                     /translation="GLGGMGGAQPLAVTMNEGVCLAIEVDEARARRRLEIGYVDRLTS
                     DPAEALDWAREAARRGEAVSIALVGNAAEIEPAWAAAGERFDLVTDQTSAHDALSGYV
                     PAEIALGDALLLRATQPDEYQRRSRRSMAAHVRAMLAFQAAGAVVFDYGNNLRAQAQE
                     AGVDDAFAYPGFVPAFIRPQFCEGRGPFRWAALSGDPADILRTDRAILELFPDDAGLR
                     RWIEMAEARVPFQGLPARICWLGYGERARAGLAFNELVRTGEVAAPIVIGRDHLDSGS
                     VASPNRETEAMADGSDAVADWPLLNALVNASAGATWVSIHHGGGVGIGYSQHAGMVVV
                     ADGTPLAAQKLERVLTTDPAMGVIRHVDAGYERAIEVARERGVRIPMLDVDTPAGPVG
                     "
     gene            1236..2213
                     /gene="ftcD"
                     /locus_tag="VIU37_01060"
     CDS             1236..2213
                     /gene="ftcD"
                     /locus_tag="VIU37_01060"
                     /EC_number="2.1.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR02024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030409 - glutamate formimidoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030412 - formimidoyltetrahydrofolate
                     cyclodeaminase activity [Evidence IEA];
                     GO_process: GO:0019556 - histidine catabolic process to
                     glutamate and formamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate formimidoyltransferase"
                     /protein_id="HEY6012555.1"
                     /translation="MLIESVPNVSEGRRLDVVDRLARAIEAVPGVYLLDRTSDASHNR
                     SVLTLAGEHGPVTEALEALVGAAIGEIDMNAHVGEHPRIGAVDVIPFVPLAATTMDDC
                     VDLARTFGRRLAERFALPVYLYANAASRPDRVKLADVRRGQYEGLRQEIEQRGREPDF
                     GPPRLHPSAGAVAVGARPFLIAYNINLASRDVELAKRIARRVRESGGGLPRVQANGFW
                     IAELGRAQVSMNVLDFTITPLWLVWETVRDIAAEDGVDLAESELIGLAPLAAFLAVAD
                     RAGAPTEHSVERRLAIAAAYLRLPDFSPMQALELRLEAARASRPAGRDP"
     gene            2210..3583
                     /gene="hutI"
                     /locus_tag="VIU37_01065"
     CDS             2210..3583
                     /gene="hutI"
                     /locus_tag="VIU37_01065"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HEY6012556.1"
                     /translation="MSGGPFRVIEGGRSDEPTPGILIVGAAEVVTMAGGVRMGTGQGD
                     VARLSASDTGGPDAPGAPVVACWEGRIAAVGPRADVERVIEADGYPLGRFARLNADGG
                     TVTPGLIDPHTHLVFAGSREGEMLLRQRGAGYLEILAAGGGILSTVAATRAASVDQLL
                     AHGRRWLDEMLGHGVTTVEAKSGYGLDLETEVKLVEVAHRLGAEGPTEVIPTFLGAHA
                     VPPEFRARPDGTEAYVRSVIEDQLPGIAAHGRALFCDVFCEPGVFDADQSRRILEAAA
                     NLGMAPRLHADELAPSGGAELAAEIGAFSADHLATPSEAGIAALAQAAGEGRPVVATV
                     LPVTTWYLMKDHGAPARAFIERGIPVAIGTDFNPGTSPTASLPLAMTMACVELGLTPD
                     EALSAVTINAARALGLEDEVGSIEPGKAADLVVWRVPTSTQIPYWPAADLARTVIKRG
                     RVVLDRS"
     gene            complement(3587..4261)
                     /locus_tag="VIU37_01070"
     CDS             complement(3587..4261)
                     /locus_tag="VIU37_01070"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6012557.1"
                     /translation="MELTWYGRTCVRIRGRDAVVVADPYQSVVGPTGRGIGGDVVTFS
                     HPDDNPLPRAKGRTSRDGKTLLPSSLENAFVLDGPGEYEVKEVLVTGVRTYRDDARGA
                     ELGKQTAFLIEVDGLHTIHLGEIGHLLSEEKLADIGSVDIACVPLGGSLSPSQAAALV
                     AQLDPRIVVPMPMCDDDDECAEALKRFFHEMGAEAVTQPKVSVTATSLPVETTTVLLE
                     SRGKQV"
BASE COUNT          624 a         1646 c         1665 g          618 t
ORIGIN      
        1 gggtctcggc ggcatgggcg gcgcgcaacc gctggccgtg accatgaacg agggcgtctg
       61 cctcgcgatc gaggtggacg aggcgcgggc caggcgccgg ctcgagatcg gctacgtgga
      121 ccggctgacc tcggaccccg ccgaagcgct ggactgggcc cgcgaggcgg cccgccgggg
      181 cgaggccgtg tcgatcgccc tcgtcggcaa cgcggccgag atcgagccgg cgtgggccgc
      241 cgccggcgag cggttcgacc tggtcaccga ccagacgtcg gcccacgacg cgctcagcgg
      301 ctacgtgccg gcggagatcg ccctcggcga cgccctcctg ctccgggcga cccagcccga
      361 cgagtaccag cgccggtcgc gccggtccat ggctgcccac gtccgggcga tgctcgcgtt
      421 ccaggcggcc ggcgcggtcg tgttcgatta cggcaacaac cttcgggcgc aggcccagga
      481 ggccggcgtc gacgacgcgt tcgcctaccc ggggttcgtg ccggcgttca tccgcccgca
      541 gttctgcgaa ggccgtggcc cgttccgctg ggcggcgctg tccggcgatc cggccgacat
      601 cctgcggacc gatcgcgcga tcctcgagct cttccccgac gacgccggcc tccgccggtg
      661 gatcgagatg gccgaggcgc gggtgccgtt ccagggactg ccggcgcgga tctgctggct
      721 cggctacggc gagcgcgccc gggccggcct ggcgttcaac gagctggtcc ggaccgggga
      781 ggtcgccgcg ccgatcgtga tcggccggga ccacctcgat tcgggctcgg tcgcgtcgcc
      841 gaaccgggag accgaggcga tggccgacgg ctcggacgcc gtcgccgact ggccgctcct
      901 caacgccctg gtcaacgcct cggcgggcgc gacctgggtg tcgatccatc acggcggcgg
      961 ggtcgggatc ggctactcgc agcacgccgg gatggtcgtc gtcgccgacg gcacgcccct
     1021 cgccgcacag aagctggagc gcgtcctgac gaccgacccg gcgatggggg tgatccgcca
     1081 cgtggatgcc gggtacgaac gggcgatcga ggtcgcccgc gagcgcgggg tgcggatccc
     1141 gatgctggac gtcgatacgc cggcggggcc cgtcggctga ccctggcgtg ccgggcaacg
     1201 tcacggagac cgactccgcg ggctagcatc gggaggtgct gatcgagtcc gtccccaacg
     1261 tctcagaagg ccgccggctc gacgtggtgg accgcctggc gcgggcgatc gaggcggtgc
     1321 cgggcgtcta cctgctggac cggacgagcg acgccagcca caaccgctcg gtcctgacgc
     1381 tggccggcga gcacggcccg gtgaccgaag cgctcgaggc gctcgtgggc gccgcgatcg
     1441 gcgagatcga catgaacgcc cacgtcggcg agcacccccg gatcggggcc gtcgacgtga
     1501 tcccgttcgt gccgctggcg gccacgacca tggacgactg cgtcgatctt gcccggacct
     1561 tcgggcgccg gctggccgag cggttcgccc tcccggtcta cctgtacgcc aacgcggcct
     1621 cgcgaccgga tcgggtgaag ctcgccgacg tgcgacgggg ccagtacgag ggcctccggc
     1681 aggagatcga gcagcgcggt cgcgagcccg acttcggacc cccgcgtctc cacccgtccg
     1741 cgggcgccgt ggccgtcggc gcacgcccct tcctgatcgc ctacaacatc aacctcgcct
     1801 cgcgcgacgt ggaactggcg aagcggatcg cccggcgcgt gcgcgaatcg ggcggcggcc
     1861 tgccgcgcgt ccaggcgaac gggttctgga tcgccgagct cggccgcgcg caggtctcga
     1921 tgaacgtcct cgacttcacc atcacgccgc tgtggctcgt gtgggagacc gtgcgcgaca
     1981 tcgccgccga ggacggcgtg gacctcgcgg aatcagagct catcgggctg gcgccgctgg
     2041 ccgcgttcct ggcggtcgcc gatcgcgccg gcgccccgac cgagcacagt gtcgaacgcc
     2101 gcctggcgat cgccgccgcc tacctgcggc tgcctgactt ctcgccgatg caggcgctcg
     2161 agctgcggct cgaagcggcc cgcgcctcac ggcccgccgg tcgcgacccg tgagcggcgg
     2221 tccgttccgg gtgatcgagg gcgggcggag tgacgagccg acgcccggga tcctgatcgt
     2281 cggcgcggcc gaggtcgtga cgatggccgg cggcgtcagg atggggaccg gtcagggtga
     2341 cgtggcgcgc ctgtcggcga gcgacaccgg cggacccgat gcgccgggtg ccccggtcgt
     2401 cgcctgctgg gaggggcgca tcgccgcagt cgggccgcgg gcggacgtcg aacgcgtcat
     2461 cgaggcggac ggctacccgc tcggccggtt cgcgcggctc aacgccgacg gcggcacggt
     2521 caccccgggc ctcatcgatc cgcataccca cctggtgttc gccgggtcgc gcgagggcga
     2581 gatgttgctg cgccagcgtg gggccggata cctcgagatc ctggccgccg gcggcggcat
     2641 cctgtcgacc gtggcggcga cccgagcggc gtcggtcgac cagctgctcg cccatggccg
     2701 acgctggctc gacgagatgc tcggccacgg cgtgaccacc gtcgaggcca agtccggcta
     2761 cggcctcgac ctcgagaccg aggtcaagct cgtggaggtg gcgcaccggc tcggggccga
     2821 gggtccgacc gaggtcatcc cgacgttcct tggcgcgcac gccgtcccgc ccgagttccg
     2881 ggccaggccc gacgggaccg aggcctacgt acggtcggtc atcgaggacc agctgccggg
     2941 gatcgccgcc cacggccggg cgctgttctg cgacgtgttc tgcgagcccg gcgtgttcga
     3001 cgccgaccag tcgcggcgga tcctcgaggc tgccgcgaac ctgggaatgg cgccacgact
     3061 ccacgccgac gagctcgcgc cgtcgggcgg cgccgaactg gcagccgaga tcggcgcgtt
     3121 ctccgcggac cacctggcca cgccgtccga ggcggggatc gccgcgctcg cccaggcggc
     3181 aggcgagggt cgcccggtcg tggcgaccgt cctcccggtc acgacgtggt acctgatgaa
     3241 ggaccacggc gcgccggccc gggccttcat cgaacgcggg atcccggtcg ccatcgggac
     3301 cgacttcaat cccggcacgt cgccgaccgc cagcctgccg ctggcgatga cgatggcctg
     3361 cgtcgagctc gggctcacgc cggacgaggc actgagcgca gtgaccatca atgccgctcg
     3421 tgcgctcggg ctcgaggacg aggtcggctc gatcgaaccg ggcaaggccg ccgacctggt
     3481 ggtctggcgc gtccccacct cgacccagat cccgtattgg ccggccgccg acctggcacg
     3541 cacggtgatc aagcgcggcc gggtggtcct ggaccggagc tagcggtcag acctgcttgc
     3601 cgcgggactc cagcagcacc gtcgtcgttt ccacggggag gctcgtggcg gtcaccgaca
     3661 ccttgggctg ggtcaccgcc tcggcgccca tctcgtggaa gaaccgcttc agcgcctcgg
     3721 cgcactcgtc gtcgtcatcg cacatcggca tcgggaccac gatccgaggg tccagctgtg
     3781 cgacgagcgc cgcagcctgg ctcggcgaca gcgaaccccc gagcgggacg caggcgatgt
     3841 cgaccgatcc gatgtcggcc agcttctcct ccgacagcag gtgcccgatc tcgccgagat
     3901 ggatcgtgtg gaggccgtcg acctcgatca ggaacgcggt ctgcttgccc agctcggcgc
     3961 cccgggcatc gtcgcggtag gtccggacgc cggtcacgag gacttccttg acctcgtact
     4021 cgcccgggcc gtcgaggacg aaggcattct cgaggctgga cggcaacagg gtcttgccgt
     4081 cgcgagacgt ccggcccttc gcgcgtggca gcggattgtc gtccggatgg ctgaacgtga
     4141 ccacgtcacc gccgatgcca cggcccgtcg gccccacgac cgactgatac ggatcggcca
     4201 ccacgaccgc atcccggccg cggatccgta cgcacgtgcg gccataccac gtcagttcca
     4261 tctcctcgat tctgacacag cggactcatc acccgctcta ccgcccgcgg cctcgggagg
     4321 ttcaggagaa tcggcgcccc ggatggccca ggcgcaaggc gccggcgagc acgtgagcga
     4381 gcgcactgga agtgcgtgag cgagcgagcg gagccggcaa cgcggcgaat gggtcatccc
     4441 gggcgctgcc gtccgtcgca gacactcccc ggaaaaaggg agaccggagg cgcctgccca
     4501 atcggcgcct ccggtcggag ggagggagga aggaaccgtt gagggttcgt cca
//
LOCUS       DATDDI010000073         2919 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_1223, whole genome shotgun sequence.
ACCESSION   DATDDI010000073 DATDDI010000000
VERSION     DATDDI010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1223"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VIU37_01075"
     CDS             complement(<1..257)
                     /locus_tag="VIU37_01075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012558.1"
                     /translation="MSRAHAPRRYAVTGPLDLRRTLSPLGRGPADRSLRFAPGRAWRA
                     TRTPDGPASLAITQLGDEIVVEAWGPGTDWALAAVPELLGLS"
     gene            647..952
                     /locus_tag="VIU37_01080"
     CDS             647..952
                     /locus_tag="VIU37_01080"
                     /inference="COORDINATES: protein motif:HMM:NF015298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEY6012559.1"
                     /translation="MSLNPWRWDGNVSWYGPEFYGKRTACGYAMTQQLLGVAHRSLPC
                     GTLITFRNPANGRTITLPVVDRGPYVYSRQWDLTGGACLALGHCYTGAFQWRYARAG"
     gene            complement(992..2032)
                     /locus_tag="VIU37_01085"
     CDS             complement(992..2032)
                     /locus_tag="VIU37_01085"
                     /inference="COORDINATES: protein motif:HMM:NF016973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF695 domain-containing protein"
                     /protein_id="HEY6012560.1"
                     /translation="MPFFKRDSATSKAPADFWTWWSSARDRIAQAIATGRFEPSLVEE
                     IGRAVDAIRPGMAWELAPGHVARHAFCVSPEGNAELRQAALRWLAAAPPADETWEFHA
                     SKQPARQVGPIRIGNSEFDLGEMRSIATWDATHRRVDVRLWHPRFPDAAPAVRLQVGF
                     VFLDKLLGEDDVERWIGGIELLDGGPAGLTPAELKAEVERRANEPAAESEWVVGQLTR
                     PDGSVGVASVNAALKRIDHPFLDYHVTVTVVLGVDRLPNGTEAATLNAEEDDLLARLG
                     SVALFVGRVTTPGERTMHFIAEVPDQMRPAIDGWAAALPDSIAPGLPARRIKVNFNRD
                     PTWSSLKAIGIG"
     gene            complement(2048..>2919)
                     /locus_tag="VIU37_01090"
     CDS             complement(2048..>2919)
                     /locus_tag="VIU37_01090"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: protein motif:HMM:NF009709.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HEY6012561.1"
                     /translation="SERGEAIPVVFVTVTNNSGGGQPVSLENLRAVRALCDRFEVPLF
                     LDACRFAENAWFIKTREAGQADRSIPDIVREMASLADGMTMSAKKDGLANIGGWLAMN
                     DDDLAAACRNLLILTEGFPTYGGLAGRDLEAIAQGLREVVHEDYLQYRIRSTAYLGDA
                     LHAAGVPLVMPFGGHAIYLDARALLPQIPPLQYPGQALAIALYVEGGIRGCEIGTVMF
                     GRHPNGSEEPAAMDLVRLAIPRRTYTQSHIDYVIEVVQRVAERAADLRGLRMVQPEPP
                     SLRHFTARFEPVT"
BASE COUNT          426 a         1061 c         1008 g          424 t
ORIGIN      
        1 gacaacccga gcagctccgg gaccgccgcc agcgcccaat ccgtgcccgg cccccaggcc
       61 tccacgacga tctcgtcgcc gagctgggtg atcgcgagtg aggccggccc atcgggcgtc
      121 cgggtggccc gccaggcgcg acccggagcg aagcggagcg accgatcggc gggaccgcgg
      181 ccgagcggcg acagcgtccg gcggagatcg agcggccccg tcaccgcgta gcgacgaggc
      241 gcgtgcgcgc gtgacattgc aacaatcctg acacgctccg gatttcgtcg cgcattcccc
      301 ggaaatcctc gcaaagcgcg ttccgtgcta tgttgggcca gacgtgcgac gccccagagt
      361 cgtcgcgagt acggcgctca tcgccgccct cgccctggtc gccgtccccg gtcccgtggg
      421 ttcgtgggtc cccaatccca gctcccaggt ggatccgagc ctcttcagac aggtcgaggc
      481 cgcggcgctt gtccgcggga cggtgatgat gattcagccc cctgatccgg gggcccgttc
      541 agacgggaac ctggatcaag gttcgactct gttcgaaccg tcccagcgaa ccgagccgct
      601 cccggctccg gttcgacccg cccagcccgc cccggcggcc gggtcggtga gcctgaaccc
      661 gtggcgctgg gacggcaacg tgtcgtggta cggcccggag ttctacggca agcgaaccgc
      721 gtgcggctac gccatgaccc agcagttgct cggcgtcgcg caccgaagcc tgccctgtgg
      781 aacgctcatc accttccgca atcccgccaa cggccgcacg atcacgctcc ccgtcgtcga
      841 tcgcgggccg tacgtctact cccgccagtg ggacctgacc ggcggcgcgt gcctggcgct
      901 cgggcactgc tacaccggcg cgttccagtg gagatacgcg cgcgccggct gaggacccac
      961 gtttggcccc cccggcgacc cgggcaggcc gtcacccgat gccgatggcc ttgagcgacg
     1021 accacgtcgg atcccggttg aagttcacct tgatccgacg tgccggcagc ccgggagcga
     1081 tggaatcggg cagcgccgcc gcccagccgt cgatggccgg gcgcatctgg tccgggacct
     1141 cggcgatgaa atgcatcgtg cgctcgccgg gcgtggtcac ccggccaacg aagagcgcca
     1201 cgctgcccag ccgcgcgagc aggtcgtcct cctccgcgtt gagcgtggcc gcctcggtgc
     1261 cgttcggcag gcgatccacc ccgaggacga ccgtgaccgt gacgtggtaa tccaggaacg
     1321 gatggtcgat ccgcttgagc gccgcattga ccgaggccac acccaccgac ccgtccggcc
     1381 gcgtcagctg acccacgacc cattcgctct cggctgccgg ctcgttcgcg cggcgctcga
     1441 cctccgcctt gagttcggcc ggcgtcaggc cggccggccc gccgtcgagc agctcgatcc
     1501 ctccgatcca ccgctcgacg tcgtcctcgc cgagcagctt gtcgaggaac acgaacccga
     1561 cctgcagccg aacggccggc gccgcgtccg gaaatcgcgg gtgccacagc cgaacgtcca
     1621 cccgccgatg cgtggcatcc cacgtcgcga tcgaacgcat ctcgccgagg tcgaattcgc
     1681 tgttgccgat ccggatcggg cccacctgcc gggcaggctg cttcgaggcg tggaactccc
     1741 aggtctcgtc ggccggtggc gccgcggcca gccagcgcaa cgccgcctgg cggagctcgg
     1801 cgtttccctc tggcgagacg cagaaggcgt gccgggcaac gtggccgggc gccagctccc
     1861 acgccatccc cggccggatc gcgtcgactg cccggccgat ctcctcgacc agcgacggct
     1921 cgaagcgtcc ggtcgcgatc gcctgggcga ttcggtcgcg cgcgctcgac caccacgtcc
     1981 agaagtcggc gggagccttc gaggtcgcgg aatcgcgctt gaagaagggc atcgtcgaat
     2041 cccccgctca ggtgactggt tcgaaccgcg ccgtgaagtg ccggagcgac ggcggctcgg
     2101 gctggaccat ccgcagcccg cgcaggtcgg ccgcgcgttc ggcgacgcgc tggacgacct
     2161 cgatgacgta gtcgatgtgg ctctgcgtgt aggtccggcg cgggattgcc aggcggacga
     2221 ggtccatcgc cgccggctcc tccgagccgt tggggtgccg gccgaacatg acggtcccga
     2281 tctcgcagcc gcggatcccg ccttcgacgt agagcgcgat cgccagcgcc tggcccgggt
     2341 actggagcgg cgggatctgc gggagcaacg ctcgcgcgtc gaggtagatc gcgtgcccgc
     2401 cgaacggcat gacgagcggc acgccggcgg cgtggagcgc gtcgccgagg tacgcggtcg
     2461 agcggatccg atactgcagg tagtcctcgt ggacgacttc gcggaggccc tgcgcgatcg
     2521 cctcgaggtc gcggccggcg aggccgccat aggtcgggaa tccctcggtc aggatgagga
     2581 ggttccggca cgcggcggcg aggtcgtcgt cgttcatcgc gagccagccg ccgatgttgg
     2641 ccagcccgtc cttcttggcg ctcatcgtca tcccgtcggc cagcgacgcc atctcgcgga
     2701 cgatgtccgg gatcgaacga tcggcctgcc cggcctcgcg ggtcttgatg aaccaggcgt
     2761 tctcggcgaa ccggcaggcg tcgaggaaga gcggcacctc gaagcggtcg cacagggcgc
     2821 ggacggcgcg gaggttctcg agcgagaccg gctggccgcc cccggagttg ttggtcaccg
     2881 tgacgaagac gaccgggatg gcttcgcctc gctccgaaa
//
LOCUS       DATDDI010000074         2050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_147011, whole genome shotgun sequence.
ACCESSION   DATDDI010000074 DATDDI010000000
VERSION     DATDDI010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147011"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            415..1233
                     /gene="heR"
                     /locus_tag="VIU37_01095"
     CDS             415..1233
                     /gene="heR"
                     /locus_tag="VIU37_01095"
                     /inference="COORDINATES: protein motif:HMM:NF037099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heliorhodopsin HeR"
                     /protein_id="HEY6012562.1"
                     /translation="MSAAAPVMHPAIAIASDRSASLFRWNLVLAGLHFLQFVVMLAIS
                     FARNPLVTAPVTSSYLAWDPATRTLVDAQRQVFDLPIGPTVAAFFLLSAIAHFTVAIP
                     ARRWYESRLARGQNPARWIEYAFSSSLMIVVIASLSGIREVGTLIAVFGANAGMILFG
                     WSMEAANEGRERPQWLHYVFGCLMGAIPWLVIGASLLTAATAPDATAIPAFVIAIYVS
                     LFISFNVFAFNMVAQYAKLGRWRDYLYGERVYMLLSLVAKSLLAWQVFSGTLRP"
     gene            1340..1600
                     /locus_tag="VIU37_01100"
     CDS             1340..1600
                     /locus_tag="VIU37_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004717067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY6012563.1"
                     /translation="MGIIAWIVLGAIAGWLTNMIMGGGEGVIATIILGIVGAVVGGYV
                     AGTVFKVADVTGINVESIVVAVIGGIIVVAVYRLVMTRRTTG"
     gene            complement(1632..>2050)
                     /locus_tag="VIU37_01105"
     CDS             complement(1632..>2050)
                     /locus_tag="VIU37_01105"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY6012564.1"
                     /translation="VVLEITEHVEIEDYAGLRRELQRLGSTVRLAVDDAGAGYASFRH
                     ILELAPDFVKIDLDLVRGVDAEPARQALIAGMGYFAVKRKLRLVAEGIETRKELDALQ
                     ALAVPYGQGYLLGRPRDGTTTETWPTKVDLPAFPHS"
BASE COUNT          287 a          722 c          686 g          355 t
ORIGIN      
        1 cctcctcgcc gatctcgccg cccggcggaa tgctcatgac cacgacctgg gcgtgcggtc
       61 cggtcgcgac gacttcgcgg aaccagtggt tcttcttcgc caggctgacg atgtcctcgt
      121 tgaatgccat ggtcgcgtgc ctcctggccg gttcgtcgac tggatcgttg gcgaacgctc
      181 ggccgggacg actatcgcgc ggggaccccg ccgaggccag tgccgaccgg ctcccggtgc
      241 agccggctga ggggcagagt ttgtacaacc tcgcgcagcg caaaccattg acaagccgca
      301 gcacatgcgg gtacagtctc cccagaaccc tgtacagagg gtgaacattg accgaccagc
      361 gtatcctgct cacgaggagc agggcgcccc gagccgatct ccgaggtgtt ctcgatgtcc
      421 gccgccgccc ccgtcatgca ccccgccatc gcgatcgcgt ccgatcgctc ggccagcctg
      481 ttccgctgga acctggtcct cgccgggctg cacttcctcc agttcgtggt catgctcgcg
      541 atctcgttcg cgcgcaaccc gctcgtcacg gccccggtca cgagcagcta cctcgcctgg
      601 gatcccgcca cccgcacgct ggtcgacgcc cagcgacagg tcttcgacct gccgatcggc
      661 cccaccgtgg ccgcgttctt cctgctcagc gcgatcgcgc acttcaccgt cgcgatcccg
      721 gcgcgccgct ggtacgagtc gaggctcgcc cgcggccaga acccggctcg ctggatcgaa
      781 tacgccttct cgtcgagcct gatgatcgtc gtgatcgcga gcctgagcgg gatccgcgag
      841 gtcggcacgc tgatcgccgt cttcggggcc aacgccggga tgatcctgtt cggctggagc
      901 atggaggcgg cgaacgaggg tcgcgaacga ccgcagtggc tgcactacgt cttcggctgc
      961 ctgatgggcg ccatcccgtg gctcgtcatc ggcgcgtcgc tgctgaccgc cgccacggcc
     1021 ccggacgcca cggcgatccc ggcgttcgtg atcgcgatct acgtctcgct gttcatcagc
     1081 ttcaacgtgt tcgcgttcaa catggtcgcc cagtacgcga agctcgggcg ctggcgcgac
     1141 tacctgtacg gcgagcgggt gtacatgctg ctcagcctgg tcgcgaagtc actgctcgcc
     1201 tggcaggtct tctcgggcac gctccggccc tagcggaggg ctgtccggtc gcacgtcctc
     1261 ggcgtacgat ccgtcgcgac ggatcccggc gtctgcccgt ggacgctcca cggacgcccg
     1321 tgttcgtcag gaggaagcca tggggatcat cgcgtggatc gtcctgggag cgatcgccgg
     1381 gtggctcacc aacatgatca tgggcggcgg tgaaggcgtc atcgccacga tcatcctggg
     1441 catcgtcggg gccgtcgtcg gcggctacgt ggcggggacc gtgttcaagg tcgccgacgt
     1501 gaccggcatc aacgtcgaga gcatcgtcgt ggcggtgatc ggcggcatca tcgtggtggc
     1561 cgtctaccgc ctcgtgatga cgcgacgcac gaccggctga gtcgtccacc cggcagcggg
     1621 ccgggcgtcg atcaggagtg ggggaacgcg ggcaggtcga ccttcgtcgg ccaggtctcg
     1681 gtggtcgtgc cgtcccgtgg ccgccccagc aggtagccct gcccgtacgg caccgccagg
     1741 gcctggagcg catcgagctc cttgcgcgtc tcgatgccct cggcgaccag ccggagcttg
     1801 cgcttgacgg cgaagtagcc catcccggcg atcagcgcct ggcgggccgg ttccgcgtcg
     1861 acgccgcgga ccaggtccag gtcgatcttc acgaagtccg gcgcgagctc gaggatgtgc
     1921 cggaagctgg cgtagccggc gccggcgtcg tccaccgcca ggcggacggt cgatccgagt
     1981 cgctgcagct cgcgccgcag cccggcgtag tcctcgatct cgacgtgctc ggtgatctcg
     2041 agcacgaccg
//
LOCUS       DATDDI010000075         4720 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_563280, whole genome shotgun sequence.
ACCESSION   DATDDI010000075 DATDDI010000000
VERSION     DATDDI010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4720
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_563280"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..591)
                     /locus_tag="VIU37_01110"
     CDS             complement(19..591)
                     /locus_tag="VIU37_01110"
                     /inference="COORDINATES: protein motif:HMM:NF013346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM165/GDT1 family protein"
                     /protein_id="HEY6012565.1"
                     /translation="MDAFALSFGVILLAELGDKSQLMALAFAARYRARTVLVAVSVAT
                     LVVHAGSVLLGSAFALALPTSGIQVVAGAAFFGFAGWTIRGDRLGEGDEQRAGRGGRW
                     AMLTIGTAFFLAELGDKTMLATITLATTEEPIGTWLGSTAGMVAADAIAIVAGATLGA
                     RLPERAIRLFAAAAFVVFGALLVLAGLGIL"
     gene            complement(600..1883)
                     /locus_tag="VIU37_01115"
     CDS             complement(600..1883)
                     /locus_tag="VIU37_01115"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012566.1"
                     /translation="MRRFHRDARLFLVTTFVAGAALSLYWIDFNLYLESLGYSNSTIG
                     VVSTIASIAGAAAAFPASAASDRFGRRAIIAGGVVLGLVALAGLLLTQALPLIVVMAA
                     CWAVGFQAFQVVQAPFLAEHSDPEHRNQLFAAQFAIQNVTNMAAAILGGIGAAAIAGW
                     IGLDPAGPGTYRVILAIMAVLLVASLFSVALLADDRPRVVTGARLVRAGEPAAFPPDP
                     RRSRAIFGIVVRDRARFARLVFPGFLISLGAGQVIPYLNLFIQHKFGLDLASLNAVFA
                     FTSLGTVAAILAQPALARRFGQITSVVIVQAASLPFLAVLGFSPILWMVILAMAVRSS
                     LMNAGNPIFSAFAMERVTAAERATLSAAMTVLWQVGWVVGGIYYTILQAVLGFDGGYT
                     VNFLTIISLYTIATGLYWAWFGRSDVRPRSAPSPA"
     gene            complement(1966..2604)
                     /locus_tag="VIU37_01120"
     CDS             complement(1966..2604)
                     /locus_tag="VIU37_01120"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HEY6012567.1"
                     /translation="MNAPLPDLPPPPSTGAWVTLEPALRRGYDLLNRWFMVPLHRLGL
                     GAWIATPVGGYMLLLEVRGRRTGKARHVPLSYVIADGAIWVLAGYGVRTQWYRNILAD
                     PEVVAWLPGRVIPCRASEAREPADRARIIPFLARNIGLPGAMIGGGPRHADDESILST
                     VSWVPLVRLDPRSGPIAGGPDDPGGRAWIWRQLVVAWIAVSAARGARRWMSR"
     gene            complement(2721..>4720)
                     /locus_tag="VIU37_01125"
     CDS             complement(2721..>4720)
                     /locus_tag="VIU37_01125"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEY6012568.1"
                     /translation="EHVKAVVDLGVSADGQARQALVEASVIAFSAGPEASGVADAIRA
                     TFGAAGLPAGLQAHLTGQLATAVDTVKASGSSQDQTQQLSLLFIVLLLLLAFRAVLAP
                     IVTLVPAAFVLVLSGPVIAEATKIGVQVSSITQLLLIVLILGAGTDYGVFLVFRVREE
                     LRRGLTPHEAVIRSVSRVGESITFSALTVIAALVSLVLAEFAFYQSLGPALAIGIALM
                     LVAGLTLLPALLAILGRAVFWPTGASVRTHEHTGLWDHIGVAATRKPGTTLVAGVALF
                     VVLGATLLTTGVAGFADVSSSPAGTDSAAGSAQIAAHFPSSTTNRSAVLLQFPASVWD
                     DPSVLARAQEGLAGLGEFSGLVGPLNPNGFPLTTDQLTSLHATLGPARDLPAEPATTA
                     VPAPVYNAYRSTGQLISPDGRTVQYSVAYANGDASSPAVLDAVPAMRADVDRVARAAG
                     ASANGVFGQVAFAADVSHISGTDLVRIIPIVAVLIALLLAIVLRSAVAPLYLVASIVL
                     SYGAALGLVGIVFVHLGGQDGISFILPFLMFVFLMALGSDYNILIMSRIREEAHGLPL
                     RDAVARAIGRTGSTITTAGVILGGTFAVLAVAGGSGGGGQIQQIGYGVAAGVLMDTFL
                     LRSLLVPSLVVLLGRWNWWPAHLARMPAHDAAAGLPQPPIA"
BASE COUNT          795 a         1673 c         1719 g          533 t
ORIGIN      
        1 ccaagggctc cggagggctc acaggatccc gagcccggcc aggaccagca atgccccgaa
       61 caccacgaat gccgcggcgg cgaacagccg gatcgcccgc tcgggcagcc gcgccccgag
      121 ggtcgcgccg gcgacgatcg cgatcgcgtc ggccgcgacc atccccgcgg tcgatcccag
      181 ccacgtcccg atcggctcct cggtggtcgc gagggtgatc gtcgccagca tcgtcttgtc
      241 gccgagctcg gcgaggaaga aggcggtgcc gatcgtgagc atcgcccagc gtcccccgcg
      301 cccggcacgt tgctcgtcgc cctcgcccag gcggtcgccg cggatggtcc agccggcgaa
      361 cccgaagaac gccgcgccgg cgacgacctg gatcccggag gtcggcaacg ccagcgcgaa
      421 ggcggagccc agcaggaccg acccggcatg gacgacgagc gtcgccacgc tcacggcgac
      481 gaggaccgtc cgggcccggt agcgggccgc gaaggcaagc gccatgagct ggctcttgtc
      541 gccgagctcg gcgagcagga tgacgccgaa ggagagggcg aacgcgtcca cgatggcgct
      601 caggccggcg acggcgcgga gcgcgggcgg acgtccgacc ggccgaacca ggcccaatag
      661 agcccggtgg cgatcgtgta cagcgagatg atcgtcagga agttcaccgt gtacccgccg
      721 tcgaacccga gcacggcctg caggatcgtg tagtagatcc cgccgacgac ccagccgacc
      781 tgccacagga cggtcatcgc cgccgagagc gtcgctcgtt cggccgccgt gacgcgctcc
      841 atcgcgaacg cgctgaagat cgggttgccg gcgttcatca gggaacttcg cacggccatc
      901 gccaggatca ccatccacag gatcggcgag aagccgagca cggccaggaa cggcaggctg
      961 gccgcctgga cgatgacgac cgacgtgatc tggccgaacc gccgcgccag ggccggctgc
     1021 gcgaggatcg cggcgacggt gcccaggctg gtgaaggcga agacggcgtt cagcgacgcc
     1081 aggtcgagcc cgaacttgtg ctggatgaac aggttgaggt acgggatgac ctgtccggct
     1141 cccagcgaga tcaggaaccc ggggaagacc agccgcgcga accgggcgcg gtcgcgaacg
     1201 acgatcccga agatggcccg cgaccggcgc ggatccggcg ggaaggcggc cggctcgccg
     1261 gcacggacga gccgggcgcc ggtcacgacc cgcggccggt cgtcggccag gagggcgacg
     1321 ctgaagagcg acgccacgag cagcacggcc atgatcgcca ggatcacccg gtacgtcccg
     1381 ggtccggccg ggtcgagccc gatccagccg gcgatggccg cggcgccgat cccgcccagg
     1441 atcgcggccg ccatgttggt cacgttctgg atcgcgaact gcgccgcgaa cagctggttg
     1501 cggtgctctg gatcgctgtg ctcggcgagg aacggcgcct ggaccacctg gaacgcctgg
     1561 aacccgaccg cccagcaggc ggccatgacc acgatcagcg ggagcgcctg ggtcagcagc
     1621 agcccggcca gcgcgaccag gccgagcacc accccgccgg cgatgatcgc ccgccgcccg
     1681 aaccggtccg acgccgcgct cgccgggaac gctgcggccg cgccggcgat cgacgcgatc
     1741 gtggacacga cgccgatcgt cgaattcgaa tagccgagtg attcgagata gaggttgaag
     1801 tcgatccagt acagactgag cgccgcaccc gccacgaacg tggtgacgag gaacagccgc
     1861 gcgtcccggt ggaaccgacg cacggcaagc gccgagggcc agcgtcgacc cgatccccag
     1921 ctcactccgt tcgggccgtc gatcgctcca tgccagtcgg caacactagc ggctcatcca
     1981 gcgccgtgcg ccccgcgccg cgctgacagc gatccaggca acgaccagct gccgccagat
     2041 ccacgcccga ccgcccgggt catcggggcc gccggcgatc gggcccgaac gcgggtcgag
     2101 cctgaccaac ggaacccacg acaccgtcga caggatggat tcgtcgtcgg cgtgccgcgg
     2161 accgccgccg atcatggcgc cgggcaggcc gatgttgcgg gcgaggaacg ggatgatcct
     2221 cgcgcggtcg gcgggttcgc gggcttccga tgcccgacag ggaatgaccc ggcccggcag
     2281 ccatgcaacg acctcggggt cggcaaggat gttgcggtac cactgggtcc tgacgccgta
     2341 cccggcgaga acccagatgg caccgtcggc gatcacgtag ctgagcggga cgtggcgggc
     2401 cttccccgtc cgccggccgc gcacctcgag caggagcatg tagccgccga ccggggtcgc
     2461 gatccacgcg ccgaggccaa gccggtggag gggcaccatg aaccagcggt tgaggaggtc
     2521 gtagccacgg cgaagcgccg gctcgagggt cacccaggct cccgtcgacg gcgggggcgg
     2581 caggtccggc agtggcgcat tcatgtcgtc cacgatgcgg ggcgaggcga cccggagcga
     2641 gtgccgaagg tccgatcctg tcgagtcgtt tctcccggac cggcccgggg atccgtcccc
     2701 ggcagcggcc gagccgcgct tcaggcgatc ggcggttgcg ggaggccggc ggcggcgtcg
     2761 tgagcgggca tccgcgcgag gtgcgccggc caccagttcc agcggccgag cagcacgacg
     2821 agtgacggca cgagcagcga gcggagcagg aacgtgtcca tcagcacccc ggccgcgacg
     2881 ccgtagccga tctgctggat ctgcccgccg ccgcccgacc cgccggccac cgccagcacc
     2941 gcgaacgtcc cgccgaggat cacgccggcc gtggtgatcg tgctgccggt ccggccgatc
     3001 gcccgcgcca ccgcgtcgcg cagcggcagg ccgtgggcct cctcgcggat ccggctcatg
     3061 atcaggatgt tgtagtccga cccgagcgcc atcaggaaca cgaacatcag gaacggcagg
     3121 atgaagctga tcccgtcctg gccgccgagg tggacgaaca cgatgccgac caggccgagc
     3181 gcggctccgt aggacagcac gatgctcgcc accaggtaga gcggcgcgac ggcgctgcgc
     3241 aggacgatcg cgaggagcag ggcgatgagc accgcgacga tcgggatgat ccggaccagg
     3301 tcggtgcccg agatgtggct gacgtccgcc gcgaatgcca cctggccgaa caccccgttg
     3361 gcggacgcgc cggccgcccg ggccacgcgg tcgacgtcgg cgcgcatcgc cggcacggcg
     3421 tcgagcacgg ccgggctgga cgcgtcgccg ttggcgtagg cgaccgagta ctgcacggtg
     3481 cggccgtccg gactgatcag ctggccggtc gagcggtagg cgttgtagac cggcgccggg
     3541 accgcggtcg tggccggttc ggccgggagg tcgcgggccg ggccgagcgt cgcgtggagc
     3601 gacgtcagct ggtcggtcgt gagcgggaac ccgttcgggt tgagcgggcc gacgaggccg
     3661 ctgaactcgc ccagcccggc cagtccctcc tgtgcccggg ccaggaccga cggatcgtcc
     3721 cagaccgacg ccgggaactg caggagcacc gcgctccggt tggtcgtgga cgacgggaag
     3781 tgcgccgcga tctgggccga gcccgccgcg gaatccgtgc cggcggggct cgaggagacg
     3841 tccgcgaacc cggccacgcc ggtggtcagg agcgtggcgc ccaggacgac gaacagggcc
     3901 acgccggcca ccagtgtcgt gcccggcttg cgcgtcgcgg cgacaccgat gtggtcccac
     3961 aggcccgtat gctcgtgcgt ccgaaccgac gcgccggtcg gccagaagac agcccggccg
     4021 aggatcgcga ggagcgcggg caacaacgtc agccccgcca ccagcatcag ggcgatcccg
     4081 atcgcgagcg ccggacccag gctctggtag aacgcgaact cggccagcac caggctgacc
     4141 agcgcggcga tcacggtcag ggcggagaac gtgatcgact ctcccacccg gctgaccgat
     4201 cggatcacgg cctcgtgcgg ggtcagcccg cggcgcagct cctcgcgtac gcggaagacc
     4261 aggaagaccc cgtagtccgt tcccgcgccg aggatcagga cgatcagcag gagctgcgtg
     4321 atcgacgaga cctggacacc gatcttcgtt gcctcggcga tcaccggacc cgacaggacg
     4381 agcacgaacg ccgccggtac gagcgtcacg atcggggcaa gcaccgcgcg gaaggcgagg
     4441 agcagcagga gcacgatgaa cagcagcgac agctgctggg tctggtcctg ggaggacccg
     4501 gatgccttga ccgtgtcgac tgccgtggcg agctgcccgg tcaggtgcgc ctgcagcccg
     4561 gccggcagcc cggccgcacc gaacgtggcg cggatcgcat cggccacgcc gctggcctcg
     4621 ggaccggcgc tgaacgcgat caccgacgcc tcgacgagcg cctggcgcgc ctggccgtcg
     4681 gccgacaccc cgaggtccac gacggccttg acgtgctcga
//
LOCUS       DATDDI010000076         2463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_459259, whole genome shotgun sequence.
ACCESSION   DATDDI010000076 DATDDI010000000
VERSION     DATDDI010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459259"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..269
                     /locus_tag="VIU37_01130"
     CDS             <1..269
                     /locus_tag="VIU37_01130"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY6012569.1"
                     /translation="EDFAATMTAAEQAAWAAHFQRFRRLLAEGVVILVGPTLGTVNTG
                     IAIFEAPDEATARRLMDEDPAIAGGFARGELRPFRVSLLRGRDG"
     gene            complement(310..993)
                     /locus_tag="VIU37_01135"
     CDS             complement(310..993)
                     /locus_tag="VIU37_01135"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEY6012570.1"
                     /translation="MTQPIDELPTPDAVLFDLDGTLVDTVTRRIDAWEQALAEVGLPI
                     GRERLAPLIGLDGRRLAREVAALHGERIDRDRAEAIDRRSGERYERLNRTPESLPGVT
                     RVVDALEARGIRWAIATSSRAAQVATSVAALGLAREPLIVDASHVEHAKPEPDLLLYA
                     AQELRVDPSACWYVGDSTWDMVSAVAAGMLAIGVAAGSAVDATALTGAGAAAVVETLA
                     DVAATLERR"
     gene            complement(1077..2198)
                     /locus_tag="VIU37_01140"
     CDS             complement(1077..2198)
                     /locus_tag="VIU37_01140"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY6012571.1"
                     /translation="MSPMRLRARVASLASAGLLLGLLGAAGPVAAAGPQSWNVDAGTG
                     DATGVAALKFYPAAITVDAGDTITWKVAGNAHTISFLTAGQTPPSPEDPAAQAPAGGA
                     SFDGSAFTSSGIKFPAPGQDTYALTFPTAGTYPFHCLIHPGMSGTVTVAAAGTAYPLD
                     QAAITAANQAAEAADIATGHSLEASFSPTTTTNSDGSTTYHLAAGVGSGGISILRYIS
                     STLDVRVGDTVEWTNLDGNGEPHSVSFGPEPQDQTALAPSGGKTYAGSGWVSSGLYVG
                     PPIPAPHSYSLKFTKAGTYPYICVLHDVVGMTGSITVAAAPRPTSNVTPPPTNTQSVA
                     TTAGTSDFGLALAALALALVTLVSLAAAYVAVRRRAVAR"
BASE COUNT          339 a          817 c          962 g          345 t
ORIGIN      
        1 gtgaggactt cgcggcgacg atgacggcgg ccgaacaggc tgcctgggcg gcgcatttcc
       61 agcgcttccg gcgcctgctc gccgagggcg tcgtcatcct ggtgggaccg acgctcggga
      121 cggtcaatac ggggatcgcg atcttcgagg cgcccgacga ggccaccgcg cggcggttga
      181 tggacgagga cccggcgatc gcaggcggct tcgcgagggg cgaattgcgg ccattccggg
      241 tgtcgcttct gcgcggccgg gacggctgac cgctcggcga ttcgggaggc gccgaccttt
      301 cgctcgttgt cagcgacgct ccagcgtcgc ggccacgtcg gcgagggtct ccaccacggc
      361 ggcggcgccg gccccggtga gcgccgtggc gtcgaccgcc gatccggcgg ccacgccgat
      421 cgcgagcatg ccggcggcga ccgccgagac catgtcccag gtggagtcgc cgacgtacca
      481 gcaggccgag ggatcgaccc ggagctcctg ggcggcatag aggagcaggt ccggttcggg
      541 cttggcatgc tcgacatggc tggcgtcgac gatcagcggc tcgcgcgcca gaccgagcgc
      601 cgcgacggac gtcgcaacct gggcggcccg gctggacgtg gcgatcgccc agcggatgcc
      661 gcgcgcctcg agggcatcca cgacccgggt gacgccggga agcgactccg gcgtgcggtt
      721 gagtcgttcg tagcgctcgc ccgagcgtcg atcgatcgcc tcggcacggt cgcgatcgat
      781 ccgttcgccg tggagcgcgg cgacctcgcg cgcgagccgg cggccatcga gcccgatgag
      841 gggagcgagc cgctcgcgac cgatgggcag cccaacctcg gcgagggcct gctcccaggc
      901 gtcgatccgc cgggtgaccg tgtcgacgag ggtgccgtcg agatcgaaca ggacggcgtc
      961 gggcgtcggg agctcgtcga tcggctgcgt catccaccga ttctgccgga tgtcggcgac
     1021 gaatggatga gcctcacccg cccgggggga cgggtgaggc tggatcgaac ccctggtcag
     1081 cgggcgacgg cccgccgtcg aacggcgacg taggccgccg ccagggacac gagcgtcacg
     1141 agcgcgaggg ccagggccgc gagggccagg ccgaagtcgc tcgtgcccgc cgtcgtcgcc
     1201 accgattgcg tgttggtcgg cggcggcgtg acattgctgg tcggccgcgg cgcggcagcg
     1261 acggtgatcg agccggtcat cccgacgacg tcatgaagga cgcagatgta cgggtaggtg
     1321 ccggccttgg tgaacttgag cgagtaggaa tggggtgccg ggatcggcgg cccgacgtac
     1381 agcccggagc tgacccagcc ggagccggcg taggtcttgc caccggacgg cgcgagcgcc
     1441 gtctgatcct ggggctccgg cccgaacgac accgaatgcg gttcgccgtt gccgtccagg
     1501 ttggtccact cgacggtgtc cccgacgcgg acgtcgaggg tggaagagat gtagcgaagg
     1561 atcgagatcc cgccactgcc gacgccggcc gcgaggtggt aggtcgtgga cccgtcgctg
     1621 ttggtcgtgg tcgtcggcga gaagctcgcc tcgaggctgt ggccggtcgc gatgtcggcg
     1681 gcctcggcgg cctggttggc cgcggtgatg gcggcctggt ccagcggata cgcggtgccg
     1741 gccgcggcga ccgtgacggt cccgctcatg cccggatgga tcaggcagtg gaacgggtac
     1801 gtgccggcgg tcgggaaggt gagcgcgtag gtgtcctgcc cgggcgccgg gaacttgatc
     1861 ccggagctgg tgaacgcgga gccgtcgaag ctggcgccgc ctgccggggc ctgggctgcc
     1921 ggatcctcgg gcgagggcgg cgtctggccg gccgtcagga aggagatcgt gtgggcgttg
     1981 ccggccacct tccaggtgat cgtgtcaccc gcgtccacgg tgatcgcggc gggatagaac
     2041 ttgagcgcgg cgacgcccgt ggcgtcaccg gtgcccgcgt cgacgttcca ggattgcgga
     2101 ccggccgcgg ccaccgggcc agctgccccc agcaggccga gcagcaggcc ggcggacgcc
     2161 aggctggcga cgcgcgcgcg cagacgcata ggactcattt ggcctccctc ttcagttgga
     2221 cgatggccat cgtgacgggc gatggcgaac acgcaggggt gcgtcgtccg cggacgttgg
     2281 cacacccggg tgtgcctgtc cagtgcgttg tgcggtgcgg acccggtggg cggcccgagg
     2341 ctctacgata cggcggccat gacggaaccc acccccagcc tcgccacgcc ctaccgaacg
     2401 cacacctgcg gccagctgcg ggccggtgat gccggcacgg acgcccggct cgccggctgg
     2461 gtc
//
LOCUS       DATDDI010000077         1914 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_355152, whole genome shotgun sequence.
ACCESSION   DATDDI010000077 DATDDI010000000
VERSION     DATDDI010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355152"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..780
                     /locus_tag="VIU37_01145"
     CDS             184..780
                     /locus_tag="VIU37_01145"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6012572.1"
                     /translation="MRLPYTCLATEARRTRRSGGAVVLSETDELKGPTMTEILPRVAH
                     EHHERLLQDVDRMPETGERLLTGDAIDVRRAAQETSAFLGGTLLPHMDAAEQTLYPEL
                     ERMLQNRHSMAPMRREHAELRRLVGDFARLTGQLDAGSIALGSRLALRRVLFQVYALL
                     KIHLAEEEAYLRVVNRGVSADVADLLAAALEHPGFGPA"
     gene            845..1318
                     /locus_tag="VIU37_01150"
     CDS             845..1318
                     /locus_tag="VIU37_01150"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6012573.1"
                     /translation="MHARASQPQPDPAAAHAAPDPLLGIASDHDSAGIPVHRGWAPVG
                     GHHRWMEPFVMVLLSVGPAHGYAIVGELADLGITNGAVDLGQVYRTLRDLEGAGQVRS
                     AWATGGPGPARREYQLTAAGYAALDEWAAVIKERARLIGEFDARYLESLSTRRTT"
     gene            complement(1338..>1914)
                     /locus_tag="VIU37_01155"
     CDS             complement(1338..>1914)
                     /locus_tag="VIU37_01155"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6012574.1"
                     /translation="HDRRDAPDRTWHARPGPNGLLATDPRMPILSLRATTQDHHAKLL
                     PHVDRLLDLAGMIGQVDCSAIHDTFDEEYAFVVGQLVPHIEAIETTLYGQLEQLLGRR
                     HSMAPMRQEHVVMRQLIEELGGYRRHAERCSWDTAEGLALRRALYRLHSILKVHLAEE
                     ELYLAVLDRNLSDEEKDLLARGIDHAMAEPL"
BASE COUNT          279 a          683 c          674 g          278 t
ORIGIN      
        1 ccagctggcg acgcacgttc gccgtggccg gggactggtt tgtccgcgcc cgcgcagagc
       61 cgaccttctc gaactcgtac agcgagctga cgccgccggc gcgctaccgg gttcgctgac
      121 gcccaaggaa tcgttcgggc agcggtcgac ggcgattcgt gacaagtggc ccgcgacttc
      181 tacatgcgtc tgccatatac ctgcctggcg accgaggccc gacgtacccg ccgatccggc
      241 ggcgccgtgg tgctcagcga gacggacgag ctgaaggggc cgaccatgac cgagatcctg
      301 ccgcgagtgg cgcacgaaca ccacgagcgg ctgctccagg acgtcgatcg catgcccgag
      361 acgggtgaac ggctcctgac cggcgacgcc atcgacgtgc gtcgagcggc gcaggagacc
      421 agcgccttcc tgggcggcac gctgcttccg cacatggatg cggccgagca gacgctctac
      481 ccggaactcg agcggatgct ccagaaccgg cactcgatgg cgccgatgcg ccgtgagcac
      541 gcggaactgc gcaggctcgt cggggacttc gcccggttga cggggcaact cgacgcagga
      601 tcgatcgcgc tcggcagccg gctggcgctc cggcgcgtcc tcttccaggt ctacgcgctg
      661 ctcaagatcc atctcgcgga ggaggaggcc tatctccggg tcgtgaaccg cggcgtatca
      721 gccgatgtcg ccgacctgct cgcggccgcc ctcgagcatc cgggcttcgg gcctgcctga
      781 gccagggcgc cgggaccggg ccagcgaccg ggccagcgac cgagcgtcta tgctcccggg
      841 gcagatgcat gcccgggcct cacagccaca gcccgatccc gccgcggcgc acgccgcgcc
      901 ggatccgctg ctgggcatcg cctcggacca cgacagcgcg gggatcccgg tccaccgggg
      961 ctgggccccc gtcggcggcc atcaccgctg gatggagccg ttcgtgatgg tcctgctgtc
     1021 ggtcgggccg gcccacggct acgcgatcgt gggcgagctg gccgacctcg gcatcaccaa
     1081 cggcgcggtc gacctcggcc aggtctatcg cacgctccgc gacctcgaag gcgcgggtca
     1141 ggtgcgctcc gcgtgggcga ccggcggacc ggggccggcg cgccgcgagt accagctgac
     1201 cgccgccggg tacgccgcgc tggacgaatg ggccgcggtg atcaaggagc gcgcccggct
     1261 gatcggcgag ttcgacgctc gatacctcga gtcgctcagc acgcgccgaa cgacctgacc
     1321 ttcgcccgtc gatccgccta gagcggctcc gccatcgcgt ggtcgatgcc gcgggcgagc
     1381 aggtccttct cctcgtcgct caggttacgg tcgaggacgg cgaggtacag ctcctcctcg
     1441 gccaggtgga ccttgaggat ggagtggagc cggtagagtg cccgccgcaa cgcgagtccc
     1501 tcggccgtgt cccagctgca ccgctcggcg tgacggcgat agccgcccag ctcctcgatc
     1561 agctggcgca tcacgacgtg ctcctgacgc atcggcgcca tcgagtgccg gcggcccagg
     1621 agctgctcga gctgcccgta cagcgtcgtc tcgatcgcct cgatgtgggg cacgagctgg
     1681 ccgacgacga aggcgtactc ctcgtcgaac gtgtcgtgga tcgccgagca gtccacctgg
     1741 ccgatcatcc cagcgaggtc gagcagccga tcgacgtggg gcagcagctt ggcgtggtga
     1801 tcctgcgtgg tcgcccgcag cgacagtatc ggcatcctcg gatcggtggc caggagcccg
     1861 ttcggcccgg ggcgagcatg ccacgtccgg tccggcgcgt cgcgccgatc gtgg
//
LOCUS       DATDDI010000078         2308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_251237, whole genome shotgun sequence.
ACCESSION   DATDDI010000078 DATDDI010000000
VERSION     DATDDI010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251237"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..1022)
                     /locus_tag="VIU37_01160"
     CDS             complement(93..1022)
                     /locus_tag="VIU37_01160"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEY6012575.1"
                     /translation="MSRVVVALGDCALVKCGEEGSIADQRRNLLAAARSLAELERAGH
                     ELVVTHGSEPDGVPRAVPTPPLDVLAAEFQGEIGYLLEQALSTQLAMEGRSRPIAVVL
                     SQVVVDPSDHSFRAPAQPIGPVYDRATARRLAADHGWSIAPDGDGWRRVVPSPPPLEI
                     IEAPSIRALVAAGEIVVASGCGGIPVSRTQSGALVGVEAVVDKDLAAVVLADSVDADA
                     LLLLTNVDAAEFGWGGPDRISIRRLTLQDAAAGVADGTFAPGSMGPKVRAAAEFVRRT
                     GKVAAIGALDDAVGVLEGRSGTTLIEQPLVAVW"
     gene            complement(1019..2002)
                     /gene="argF"
                     /locus_tag="VIU37_01165"
     CDS             complement(1019..2002)
                     /gene="argF"
                     /locus_tag="VIU37_01165"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF001986.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEY6012576.1"
                     /translation="MPTLTAPVPPASAAPLRSFLTLDQLGPHGLRALLDLTARLKRDP
                     EPFRNSLAGGRLGMLFDKPSTRTRVSFESAAWMLGMLPIVLRPDELQIGRGETISDTG
                     HTLSLYLNAIAVRTFSQASLEELAAASSIPVINALTNEHHPCQAVADVMTLEEAFGTL
                     AGISVAFIGDGDNVCHSLMQAAALAGFELRVATPPGYEPDPGIVAAAREAARATGGAI
                     VLTNDPVEAVSGVHAVYTDVWTSMGKEAEQATRKATFAGFAVDDRLMRHASSRAIFLH
                     CLPAHRGEEVSAEVIDGPASRVWPQAENRMHTEAALLYTIVAGDPGGERLP"
     gene            complement(2007..>2308)
                     /locus_tag="VIU37_01170"
     CDS             complement(2007..>2308)
                     /locus_tag="VIU37_01170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012577.1"
                     /translation="RPAAVGSIRDVLDRYPALEPLVPAMGYGPAQIAELEATLNAVDA
                     DLVLSATPIDLTRLVTLNKPITRVRYELAPVGGPKLADLIQPIVRAARPSALAGV"
BASE COUNT          319 a          819 c          875 g          295 t
ORIGIN      
        1 agccgcctcg aacgcatcgt cgttccgagc ccgcgccgcg ggccagtgcc gttcggatca
       61 atccggccgc gggggccggg ccctcgcggg acctaccaga cggcgaccag cggctgctcg
      121 atcagggtgg tgcccgatcg cccctccagg acgcccacgg cgtcgtccag cgcgccgatc
      181 gccgcgacct tgccggtccg gcgcacgaac tcggccgcgg cccggacctt ggggcccatc
      241 gatcccgggg cgaacgtgcc gtcggccacc ccggccgccg cgtcctgcag ggtcaggcga
      301 cggatcgaga tccgatccgg accaccccag ccgaactcgg ccgcatcgac gttcgtcagc
      361 agcaggagcg cgtcggcatc gacgctgtcc gccaggacga ccgcggcgag gtccttgtcc
      421 acgacggctt ccacgccgac cagggcaccc gactgggtcc ggctgaccgg gatccccccg
      481 cagcccgagg ccacgacgat ctccccggcg gccacgagcg cccggatgct cggcgcctcg
      541 atgatctcga gcggcggggg cgaggggacg acgcggcgcc acccatcacc gtcgggcgcg
      601 atcgaccagc cgtggtccgc cgcgagccgc cgggccgtcg cgcgatcgta gaccggcccg
      661 atgggctggg ccggcgcgcg gaacgaatgg tccgagggat cgacgacgac ctggctgagg
      721 acgaccgcga tcggccggct gcgaccctcc atcgccagct gcgtggacag ggcctgctcg
      781 agcaggtacc cgatctcgcc ctggaactcg gcggcgagca cgtcgagcgg cggcgtgggg
      841 acggcgcggg ggaccccgtc gggctcgctg ccgtgggtca ccacgagctc atggccggcg
      901 cgctcgagct cggccagcga gcgcgcggcc gccagcaggt tgcggcgctg gtcggcgatc
      961 gagccctcct cgccgcactt gacgagggcg cagtcgccga gcgcgaccac gacccgactc
     1021 atggcagccg ctcgccgccg gggtctccgg ccacgatcgt gtagaggagc gcagcctcgg
     1081 tgtgcatccg gttctcggcc tgcggccaga cccgcgaggc gggaccgtcg atcacctcgg
     1141 cggagacctc ttcgccgcgg tgggcgggca ggcagtgcag gaagatcgcc cgcgacgagg
     1201 cgtgccgcat gagccggtcg tcaacggcga acccggcgaa ggtcgccttg cgcgtggcct
     1261 gctcggcctc cttgcccatc gacgtccaga cgtccgtgta gacggcgtgc acgccggaca
     1321 cggcctcgac cggatcgttg gtcaacacga tcgctccgcc ggtcgccctg gcggcttcgc
     1381 gggcggcggc cacgatcccg ggatccggct cgtagccggg cggggtggcc acccggagct
     1441 cgaacccggc cagggcggcg gcctgcatca gcgaatggca gacgttgtcg ccatcgccga
     1501 tgaacgcgac cgagatcccg gccagggtcc cgaacgcttc ttcgagcgtc atcacgtcgg
     1561 ccacggcctg gcacggatgg tgctcgttgg tcagcgcgtt gatgaccggg atggacgagg
     1621 cggccgccag ctcctcgagg gacgcctggc tgaaggtccg gaccgcgatc gcgttgagat
     1681 agagcgacag cgtgtggccg gtgtccgaga tggtctcgcc ccggccgatc tgcagctcgt
     1741 ccgggcgcag gacgatcggc agcatgccga gcatccacgc ggccgattcg aagctgaccc
     1801 gggtccgggt ggacggcttg tcgaagagca tcccgagccg cccgccggcc aggctgttgc
     1861 ggaacggctc cgggtcgcgc ttgaggcggg cggtcaggtc gagcagggcg cgcaggccgt
     1921 gcggcccgag ctggtcgagc gtcaggaagc tccggagcgg agccgccgag gcgggcggca
     1981 ccggggcggt cagggtcggc atggcgtcac actcctgcca gcgcggacgg gcgggccgcg
     2041 cgaacgatcg gttggatgag gtcggccagc ttcgggccgc cgaccggcgc cagctcgtag
     2101 cggacgcggg tgatcggctt gttgagggtg accaggcggg tcaggtcgat cggcgttgcc
     2161 gacagcacga ggtcggcgtc caccgcgttg agcgtggcct ccagctcggc gatctgggcc
     2221 ggtccgtagc ccatcgccgg gacgagcggc tcgagggccg ggtagcggtc gaggacgtcg
     2281 cggatggagc cgacagcggc cggtcgtg
//
LOCUS       DATDDI010000079         3927 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_417710, whole genome shotgun sequence.
ACCESSION   DATDDI010000079 DATDDI010000000
VERSION     DATDDI010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3927
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417710"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2553)
                     /locus_tag="VIU37_01175"
     CDS             complement(<1..2553)
                     /locus_tag="VIU37_01175"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY6012578.1"
                     /translation="MNGSRLAGQIVVGTFDGRRARRKRSMLRSGVLIATLALLAVTAL
                     PAAASDSKDAVHSHWIPAVLDPARQTTVVVELGGSPVAVHEAGALARGGRLSELSQTV
                     IRAGLRDRQDALLPSLSAIGARILGQYQDAYNGIKVRVAARDLARIQALPGVVRVVPV
                     PVYHLANVTSDTYTGVPAAWAAAGGLTGRGVRIGIVDTGIDYYHADFGGSGVPADFSA
                     DDGTTIGTSAFPNAKVAGGFDFVGDDYDACGTGAALIPHPDPDPLDCDGHGTHTAATA
                     AGLGVLSGGATFHGPYNAKTLSAQHFQVGPGAAPEASLYALRVFGCAGTTDMVVDAID
                     WAVKNHLNVLSLSLGSPFGDPGSADSVAADNASKAGVVVVAAAGNDGPGAYVNSEPGA
                     SSRSIEVAAVDAIPSFPGATIAVGAGLSAIVANEATTLPVTGRLVVLPGTDGGIGLGC
                     SDTDYAGVAAGDIVVTLRGDCARVDRATLGQAAGAAAVIMVNNGEKDAFPPLEGAIKD
                     VTIPFLGVKPSGAAALQAAAGTTVTISGGITLPNPTYKAAADFSSGGPAADGSLKPDV
                     AAPGLSVFSAAVGTGTGGIRESGTSMSTPHVAGIVALVRQAHPGWTPEQVKAAIMNTA
                     SAGAVAGYDPRIAGSGLVQPAAAVSTVAIATTGPGLASLSFGARALDAAYAATKTIRI
                     QNTGRTPITYALKATFSGSSLGARLAITPSTVTVAAGRTVSVSVRLSLTAAAVASLPS
                     ADSPVDKAGGLTSIRGAVVATPTAKATGRYALRVPFLLVPRALSRITAPSTVSLTRDA
                     ATNRQAGTATLVNSGIRTGTADVFAWGLRGGSLNAGSVDLRAVGVQSLTAGPD"
     gene            complement(2739..>3927)
                     /locus_tag="VIU37_01180"
     CDS             complement(2739..>3927)
                     /locus_tag="VIU37_01180"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6012579.1"
                     /translation="FTGIVRDISRRKAIEAQLMQAQKMDAIGRLAGGVAHDFNNLLTA
                     IGGYAEMIASTFDPSDPRQAHVAGIRQATEHAASLTRQLLTFSRGQELRPSVISLSQV
                     VTTVEPMLRRLIGERVELVVDADPGTWLTVADRGQVEAILVNLAVNARDAMPEGGTLT
                     IETANVELDERYRLHHAEVKPGEYVQVTVTDTGIGMDEATMAHVFEPFFTTKDSRSGT
                     GLGLATVYGTVRQSGGYVWVYSEPGQGATFKIYLPRTTETSAVHAEPAAPQPQPKPPH
                     ATILVAEDEAVVREMVVAALERLGYRVMAASTGEEAVRLIDRLGDEVDLLLSDVVMPG
                     MSGPDLLDRARRTRPELRAIFMSGYTALTIGRPIQAGVTLLEKPFSGARLGEIVRETL
                     AGR"
BASE COUNT          517 a         1413 c         1444 g          553 t
ORIGIN      
        1 gtcgggcccg gccgtgagcg actgcacgcc gacggcgcgg aggtccaccg agcctgcgtt
       61 gagcgagccg ccgcggagac cccacgcgaa gacgtccgcg gtcccggtcc ggatcccgct
      121 gttgaccagg gtcgccgtcc ccgcctggcg gttcgtggcc gcgtcgcggg tcaggctgac
      181 tgtcgacgga gccgtgatcc gagagagcgc gcgcggcacg agcaggaacg gcacgcggag
      241 cgcataccgg cccgtcgcct tcgcggtggg cgtggcgacg accgcgccgc ggatggaggt
      301 gagcccgccg gccttgtcca ccggcgagtc cgccgacggc agggaggcga cggccgcggc
      361 ggtcaggctg agcctgaccg agacggagac cgtccggccc gccgccaccg tcaccgtcga
      421 cggcgtgatc gccaggcgtg ccccgaggga tgagcctgag aacgtcgcct tgagcgcata
      481 ggtgatcggg gtccggccgg tgttctggat ccggatcgtc ttcgtcgcgg cgtaggcggc
      541 gtcgagcgcc cgagcaccga aggacaggct cgcgagcccg ggccctgtcg tggcgatcgc
      601 gaccgtgctc accgccgcgg ccggttggac gagaccggag cccgcgatcc gcgggtcgta
      661 gcccgccacg gcgccggccg aggccgtgtt catgatcgcc gccttgacct gctcgggggt
      721 ccagcccggg tgggcctgcc ggacgagcgc cacgatgccc gccacgtgcg gcgtggacat
      781 cgacgtgccc gattcgcgga tcccgcccgt gccggtgccg accgccgccg agaagacgga
      841 caggccgggc gcggcgacgt cgggcttgag gctgccgtcg gccgccgggc cgccggacga
      901 gaagtccgcg gccgccttgt aggtggggtt cggcagcgtg atcccgccgc tgatcgtgac
      961 cgtcgtcccg gccgccgcct ggagtgcggc cgcgcccgag ggcttgaccc cgaggaacgg
     1021 gatggtgacg tccttgatcg cgccctcgag cggcgggaag gcgtccttct cgccgttgtt
     1081 gaccatgatc acggcggccg cgccggcggc ctggccgagc gtcgcccggt ccacgcgcgc
     1141 gcagtcgccc cggagggtga ccacgatgtc gccggctgcc acgccggcgt agtccgtgtc
     1201 gctgcagccc agtccgatcc cgccgtcggt tccgggcagc acgacgagcc ggcccgtgac
     1261 cggcagggtc gtggcctcgt tggcgacgat cgccgacagt ccggcaccga ccgcgatcgt
     1321 ggcgcccggg aagctcggga tggcgtcgac cgcggcgacc tcgatcgagc gcgacgacgc
     1381 accgggctcg ctgttcacgt acgcgcccgg gccgtcgttg ccggcggcgg cgaccacgac
     1441 cacgccggcc ttcgacgcgt tgtccgcggc caccgaatcg gccgatccgg ggtcgccgaa
     1501 tggcgagccg agcgacaggc tgagcacgtt gagatggttc ttgaccgccc agtcgatggc
     1561 gtcgacgacc atgtcggtcg tgccggcgca gccgaagacg cgaagggcgt acagcgaggc
     1621 ctcgggcgct gcgcccggcc cgacctggaa gtgctgggcc gacagggtct tggcgttgta
     1681 cgggccgtgg aacgtcgcac cgcccgacag gacgccgagg ccggcggccg tcgccgccgt
     1741 gtgggtcccg tggccgtcgc agtcgagcgg gtcgggatcg gggtggggga tgagcgcagc
     1801 gcccgtgccg cacgcgtcgt agtcgtcgcc gacgaagtcg aagccgccgg ccaccttggc
     1861 gttcgggaag gcgctcgtgc cgatcgtcgt gccgtcgtcg gcggagaagt cggccggaac
     1921 gcccgagcca ccgaagtcgg cgtggtagta gtcgatcccg gtgtcgacga tgccgatccg
     1981 cacgccacgc ccggtcaggc cgccggccgc cgcccaggcc gccgggacgc ccgtgtaggt
     2041 gtcgctggtc acgttcgcca ggtggtagac cggcacgggc acgactcgca cgacgccggg
     2101 cagcgcctgg atccgcgcca ggtcgcgagc ggccaccctg accttgatcc cgttgtaggc
     2161 gtcctggtac tggccaagga tccgcgcccc gatcgccgac agcgagggga gcagggcgtc
     2221 ctggcggtcc cgcagccccg cccggatcac ggtctggctc agctcagaca gccgcccgcc
     2281 ccgtgccagc gcaccggcct cgtgcaccgc gaccggcgac ccgccgagtt cgacgacgac
     2341 ggtcgtctgg cgcgccgggt cgaggacagc cgggatccag tggctgtgga ccgcgtcttt
     2401 cgagtcggag gcggccgccg gcagcgctgt gacggcgagc agggcgagcg tggcgatgag
     2461 cacccccgac cggagcatcg agcgcttccg ccgcgcgcgc cgtccgtcga aggtacccac
     2521 cacgatctgc ccggccagac gggatccgtt cacgagttcc tccctgtcga cccctcggcg
     2581 acctcgcccg ccaggtgagg ccgcgctgcc tcggggtggg ttcgccggac gtcagctcgc
     2641 tgcggcatcc agatccatgg ctgggagctc gcacgcgagt tatacgccgc ccgggtcttc
     2701 cgcgcagcgg cgattcgcgg gcgccggcgg ccttcaggtc agcggccggc cagcgtctcc
     2761 cggacgattt cgcccaggcg ggctccggag aacggcttct cgagcagggt gacgccggcc
     2821 tggatcgggc gaccgatcgt cagcgcggtg tacccggaca tgaagatcgc ccggagctcg
     2881 ggccgcgtcc ggcgcgcccg gtcgagcagg tccggcccgc tcatccctgg catcaccacg
     2941 tcgctcagca ggaggtcgac ctcgtcgccg agacggtcga tcaggcggac ggcctcctcg
     3001 cccgtgctcg cggccatcac ccggtagccg agccgctcga gggccgcgac gaccatctcg
     3061 cgcaccacgg cttcgtcctc ggcgaccagg atcgtcgcgt gcggcggctt cggctggggc
     3121 tgcggcgcgg ccggctcggc gtggaccgcg ctggtctcgg tcgtccgcgg gaggtagatc
     3181 ttgaaggtcg caccctggcc cggttccgag tacacccaca cgtacccgcc cgactggcgg
     3241 accgtgccgt aaacggtggc gaggccgagg ccagtccccg agcgggaatc cttggtggtg
     3301 aagaacggct cgaacacgtg ggccatggtc gcctcatcca tcccgatccc ggtgtcggtc
     3361 accgtaacct ggacgtactc gccgggcttt acctcggcgt gatgcagccg gtatcgctcg
     3421 tcgagctcca cgttggcggt ctcgatcgtc agggttccgc cctccggcat ggcatcccgc
     3481 gcattgacgg ccaggttgac caggatggcc tccacctggc cgcgatcggc caccgtcagc
     3541 caggtcccgg gatcggcgtc gaccaccagc tcgacccgtt cgccgatcag gcgccggagc
     3601 atcggctcca ccgtggtcac gacctggctc aacgagatca cgctcggtcg gagctcctgg
     3661 cctcgactga acgtcagcag ctggcgggtc agcgacgccg cgtgctcggt cgcctggcgg
     3721 atcccggcga catgcgcctg acgcgggtcg gatgggtcga acgtcgacgc gatcatctcc
     3781 gcgtagcccc cgatcgcggt cagcaggttg ttgaagtcgt gggccacgcc tccggcgagc
     3841 cggccgatgg cgtccatctt ctgggcctgc atgagctgcg cctcgatcgc cttgcgacgg
     3901 ctgatgtcgc ggacgatgcc cgtgaac
//
LOCUS       DATDDI010000080         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_64016, whole genome shotgun sequence.
ACCESSION   DATDDI010000080 DATDDI010000000
VERSION     DATDDI010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64016"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1718)
                     /locus_tag="VIU37_01185"
     CDS             complement(<1..1718)
                     /locus_tag="VIU37_01185"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY6012580.1"
                     /translation="MVPSTLLWTRLVADVEANAPWQRLRRSLLLLLQLLLVAILALLA
                     ARPFLERPAGLARDVVVVLDTSASMGATDVTPNRLGAAKAAVLDALRDLPTGGRVSVI
                     AADRTARIVVNETTDLGRVRQALATIEPSRASGNLGDALELAGKLAARSGDAQILVGT
                     DGALATPPAGSIDAPIRVLAVGRSHRNQAIVALAVRTSPSAVTRSVFISIANLDLDYA
                     QRRIELRGPNGIIEVRDVSLDPQARADVVIDDVPADVGTLEVRLVGSDPAVSAAPDDL
                     ATDDTAWAVVPPDQRRLVLLVGEGDPYLETALSYLPNVELYGVTPAEYGPKTERQDGR
                     PWDLVIFEDNLPPTLPQTPILAIAPPSSSPLGQVTGTLKDPGIGSLSPDEPILRYVDL
                     STTHIAEAARLTLPDWARTIVPGPGGAPLLYTGVRAGLPAGVLAFDPRHSDLPLQVAF
                     PVLLANLTGELMGGSAAPSEAIQPGTPVNLAIPADATGLAVTRPDGSVVELVPQSAES
                     RSATFTGTDLLGIYTVTPHLAAGSSPSVTAPGDSPSAAPVSPSAIVPSPGPSGSAAAP
                     SPAPVDP"
BASE COUNT          235 a          608 c          674 g          222 t
ORIGIN      
        1 ggatccaccg gcgccggcga cggggcggcg gccgacccgc tcgggcccgg cgagggcacg
       61 atcgccgacg gcgagacggg tgccgcggac ggggagtcgc cgggcgccgt tacgctcggc
      121 gacgaaccgg ccgccaggtg cggcgtcacc gtgtagatcc ccagcaggtc ggtcccggtg
      181 aaggtggcgg acctcgactc ggcgctctgc ggcacgagct ccacgaccga cccgtccgga
      241 cgcgtgacgg ccagcccggt cgcgtccgca gggatcgcca ggttgaccgg tgttccgggc
      301 tggatcgcct cggacggcgc ggccgagccg cccatcagct cgccggtcag gttggccagc
      361 agcaccggga aggcgacctg gagcggcagg tcggaatgac gcgggtcgaa ggccaggacc
      421 ccggccggga gtccggctcg cacccccgtg tagagcagcg gcgcaccacc ggggccgggg
      481 acgatcgtgc gagcccagtc cggcaacgtg agcctggcgg cctcggcgat gtgggtcgtg
      541 gacaggtcca cgtaccgcag gatcggctcg tccgggctca gcgaaccgat gccgggatcc
      601 ttgagcgtcc cggtcacctg tccgagcggg ctggaactcg gcggggcgat ggcgaggatc
      661 ggggtctgcg ggagcgtcgg cggcaggttg tcctcgaaga tcacgaggtc ccacggccgc
      721 ccgtcctgcc gttcggtctt cgggccgtac tcggccggcg tgacgccgta cagctcgacg
      781 ttgggcaggt agctgagcgc ggtttcgaga tacggatcgc cctccccgac gaggaggacg
      841 agccgtcgct ggtcgggcgg cacgaccgcc caggccgtgt cgtccgtagc gaggtcgtcg
      901 ggggccgcgc tcactgccgg gtcggacccg accagccgga cttcgagcgt gccgacgtcg
      961 gcgggcacgt cgtcgatcac gacgtcggca cgtgcctgcg gatcgagcga gacgtcgcgg
     1021 acctcgatga tcccgttcgg accgcggagc tcgatccgcc gctgcgcgta gtcgaggtcc
     1081 aggttggcga tgctgatgaa cacggaccgg gtcacggccg acggcgatgt ccggacggcc
     1141 agcgcgacga tggcctggtt ccggtgcgag cggcccacgg cgaggacccg gatcggcgcg
     1201 tcgatggacc ccgccggcgg cgtggcgagc gccccgtcgg tcccgaccag gatctgggca
     1261 tcgcccgagc gggcggccag cttgccggcg agctccaggg cgtcgccgag gttgccgctc
     1321 gcgcggctcg gctcgatcgt cgcgagggcc tggcggacgc gtccgagatc ggtcgtctcg
     1381 ttgaccacga tccgtgccgt ccgatcggcc gcgatgacgc tgaccctgcc gccggtcggc
     1441 aggtcgcgga gcgcgtcgag cacggccgcc ttggccgccc cgagccggtt gggcgtgacg
     1501 tccgtggcac ccatgctggc cgaggtatcc agcacgacca ccacgtcccg ggcgagaccg
     1561 gccggccgct cgaggaacgg ccgtgccgcg agcagcgcca ggatcgcgac gagcagcagc
     1621 tggagcagca ggagcaggct ccggcgcagg cgttgccacg gcgcgttggc ctcgacgtcg
     1681 gcgaccagcc gcgtccacag cagcgtggac gggaccacgg cctcgtcccg ccgcagctt
//
LOCUS       DATDDI010000081         2011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_64035, whole genome shotgun sequence.
ACCESSION   DATDDI010000081 DATDDI010000000
VERSION     DATDDI010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64035"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1280
                     /locus_tag="VIU37_01190"
     CDS             <1..1280
                     /locus_tag="VIU37_01190"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEY6012581.1"
                     /translation="PARKGQPIMSNNHAQDAMIRRLEVELEERSSGANAIIANAQDAE
                     RDLNDSEKETLTGLRTRMGEIKSQLTELESTRDLTEQVYARARQVDQAITTARRVGST
                     TVEYRSTGAYLVDYIAAQTGSQSAMERLEVFTRAAAHQKTADNLGVVPDPITGPLLNF
                     IDSARPVVNALGPRDMPSATWYRPKVTQHTTVAAQGSAGAAADEKSELSSQKMLITRL
                     TGTAVTYGGYVNVSRQNIDFSSPQMMDAIINDLAAQYAIQTEAALGTALNASTNNVEL
                     TTASGGTPTAAELAASLWTAAANIYTAVKGQGRVILAVPPAKLGAWGGVFSPVNPQNA
                     QSAGFNASDFGQGLVGNISGIPVYVSSGLSGVLSTTYGLALSTAAVEVYEQRVGALQA
                     TEPSVLGVQVAYAGYFTPMTVESGGIQKIVNLA"
     gene            1277..1621
                     /locus_tag="VIU37_01195"
     CDS             1277..1621
                     /locus_tag="VIU37_01195"
                     /inference="COORDINATES: protein motif:HMM:NF014133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAP domain-containing protein"
                     /protein_id="HEY6012582.1"
                     /translation="MIVDEGGRVSGSIDVAQLAVLYEQADDEDLRDHYRQVAAENGLT
                     LGEQQAVPAEEAVPKEAEPEGETKPEFYGAWSLAELQDEAAARGLAKSGNKADLAERL
                     AADDAAPEPEEE"
     gene            1625..1930
                     /locus_tag="VIU37_01200"
     CDS             1625..1930
                     /locus_tag="VIU37_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012583.1"
                     /translation="MAATIYRRDYLQRYVLTPTGTATDYSGRLTTTTADYMGRNLQAT
                     VYAISTAYTLGQVVAIPSGILLQCTVAGTSAASTPTAPGYGLTVVSGGATFLQITTT"
BASE COUNT          357 a          743 c          641 g          270 t
ORIGIN      
        1 aaccagcccg gaaggggcaa cccatcatgt ccaacaacca cgcccaggac gccatgatcc
       61 ggcgcctgga ggtcgagctc gaggagcgta gctccggagc gaacgccatc atcgccaacg
      121 cccaggacgc cgagcgcgac ctcaacgact ccgagaagga gaccctcacc ggtctgcgta
      181 cccggatggg cgagatcaag agccagctga ccgagctgga gtccacccgt gacctcaccg
      241 agcaggtgta cgcgcgggca cgtcaggtcg accaggccat caccacggcc cgccgggtcg
      301 gctcgacgac cgtcgagtac cgctcgaccg gcgcctacct cgtcgactac atcgccgcac
      361 agaccggcag ccagtcggcg atggagcgcc tcgaggtgtt cacccgtgcc gcggcgcatc
      421 agaagacggc cgacaacctc ggtgtggtcc cggacccgat caccggcccg ctgctcaact
      481 tcatcgactc cgcccgtccg gtcgtcaacg cgctgggccc aagggacatg ccgtcggcga
      541 cgtggtaccg gccgaaggtc acccagcaca ccaccgtcgc ggctcagggt tccgccggtg
      601 cggctgccga tgagaagtcg gagctgtcca gccagaagat gctgatcacc cggctgaccg
      661 gcaccgcggt cacctacggt ggctacgtca acgtgtcccg gcagaacatc gacttctcct
      721 cgccgcagat gatggacgcg atcatcaacg acctcgccgc gcagtacgcg atccagaccg
      781 aggccgcgct cgggacggcc ctgaacgcca gcaccaacaa cgtcgagctc acgaccgcct
      841 cgggtggcac acccaccgcg gccgagctcg ccgcctcgct gtggaccgcc gcggcgaaca
      901 tctacaccgc cgtcaagggc cagggccggg tcatcctcgc ggtgcccccg gcgaagctcg
      961 gcgcgtgggg tggcgtgttc tccccggtga acccgcagaa cgcccagtcg gccgggttca
     1021 acgccagcga cttcggtcag ggactggtcg gcaacatctc cgggatcccg gtgtacgtgt
     1081 cctcgggcct gtccggcgtc ctgtccacca cgtacgggct ggcgctgtcc acggccgccg
     1141 tcgaggtgta cgagcagcgg gtcggtgccc tccaggccac cgagccgtcg gtgctcggtg
     1201 tccaggtcgc ctacgccggc tatttcaccc cgatgaccgt cgagtccggc ggcatccaga
     1261 agatcgtgaa cctcgcatga tcgtcgacga gggcgggcgg gtgtccgggt cgatcgacgt
     1321 ggcccagctc gccgtcctgt acgagcaggc cgacgacgag gacctgcggg accactaccg
     1381 gcaggtcgcc gcggagaacg ggctcactct cggtgagcag caggccgtgc cggctgagga
     1441 agcggtcccg aaggaggccg aaccagaggg cgagaccaaa cccgagttct acggcgcttg
     1501 gtcgctcgcc gagctgcagg acgaggccgc tgcccgtggg ctggccaagt ccggcaacaa
     1561 ggccgacctc gccgaacggc tggccgccga cgacgccgca cccgaacctg aagaggagta
     1621 ggccatggct gccaccatct accggcggga ctacctgcag agatacgtgc tcacgccgac
     1681 cggcaccgcc accgactact cgggtcggct gaccaccacc acggccgact acatgggccg
     1741 caacctgcag gcgaccgtgt acgccatctc cacggcgtat accctcggcc aggtcgtggc
     1801 catcccgtcc gggatcctgc tgcagtgcac cgtcgcgggc acttcggccg cctccacgcc
     1861 caccgctccc ggctacggac tgaccgtggt ctccggcggg gcgacgttcc tgcagatcac
     1921 caccacctga tgccatgtcg gtcctgaccc tcgccgaggc caaggcgcac ctgaacatca
     1981 cggactccgg cagcgatgcc gaactccaga c
//
LOCUS       DATDDI010000082         3535 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_251292, whole genome shotgun sequence.
ACCESSION   DATDDI010000082 DATDDI010000000
VERSION     DATDDI010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251292"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VIU37_01205"
     CDS             complement(<1..310)
                     /locus_tag="VIU37_01205"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6012584.1"
                     /translation="MPRPPATPLPDRPILVVDDDAKIVRLVRTYLERDGFSVVTAADG
                     PAALDAIERHRPALVVLDLMLPELDGRAVVRAVRRDDEAGATPILIVSARGSTLDRIA
                     G"
     gene            438..1529
                     /locus_tag="VIU37_01210"
     CDS             438..1529
                     /locus_tag="VIU37_01210"
                     /inference="COORDINATES: protein motif:HMM:NF012381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012585.1"
                     /translation="MATLSADVTAAVASLQARWGAAAPRITDGALALAPASASAPVLA
                     PLEPATRPDPDERIVRTGFAALDAILGPGGLPRSASVALRGDGSSGRTTLAHRLAAEA
                     QSTGAIVAWVDLARSFDPIEAVARGVRLEWLVVITPETLDEGLAIGGALLAGRSVDLL
                     VLDLPAGRLPATDRPARLADRLNRLAALARRSETLFVVLEPPGLTGHLASAVAGSTGL
                     RLELARRSWIRLGRDVVGQRTEALVARNRYGPPGRRATLRILYADGGERDTCLRRDDL
                     LATDQAPDPAPAIHVERTQHDATPPSLPTAPPPRARPGPSLRALPARPAHPGRPAVGS
                     GAGRGRRPGGAGPGGPARDAARERPSARS"
     gene            1450..2604
                     /locus_tag="VIU37_01215"
     CDS             1450..2604
                     /locus_tag="VIU37_01215"
                     /inference="COORDINATES: protein motif:HMM:NF023227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012586.1"
                     /translation="MDADPAARALGVRRGMPLGSAHRLVPEACFVDPDPDADRAIAER
                     AFEALAAFSPGIAGSADPADPAFGLFEVQIDGLEPLWGPEPALTGRLVAALGRALGGT
                     PDGAGTAGADGEIRAGIAGTRFTATIAAVRARPAEPIAVPVGGEAAFLAPLPSGLLTQ
                     DPDVRARLNRFGLRRIGPVAELDRSALVARFGEEGARIHARARGEELDPFRPRRAPEH
                     LALGLPIEPSAEDLEPLRFVLHRLAVALTGQIVSRGLAAARAHLHLDLDLAFAGSGTP
                     STLDVEQRFPEPTADAEAIERLLFARLERTPPPAAVARLGLELDGTTPAAGQQLPLFN
                     PQAARGARLEWQLARLALTYGEDRVRRVDLIDPEAPLSEARWTWRPVVAP"
     gene            2601..2849
                     /locus_tag="VIU37_01220"
     CDS             2601..2849
                     /locus_tag="VIU37_01220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012587.1"
                     /translation="MTRLLREHPPIEVELDPAGDLVAIRWNGRREVVEVCNQWRVEEA
                     WWRGPIARDYFKVAGNRWLALVYLDRIDNSWHLERVYD"
     gene            3075..3326
                     /locus_tag="VIU37_01225"
     CDS             3075..3326
                     /locus_tag="VIU37_01225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012588.1"
                     /translation="MTPQQADAGVIELVLPEGGHVLVDFGNDGPRPDLEASVVEMMLT
                     SGGTAENVCQTLSDYAEASGLSARFFLGRDVVIVEMVSA"
BASE COUNT          450 a         1291 c         1293 g          501 t
ORIGIN      
        1 gcccggcaat ccgatcgagc gtcgagcccc gggccgagac gatgaggatc ggcgtcgcgc
       61 ctgcctcgtc gtcgcgacgg acggcccgga cgaccgcccg gccgtccagc tcggggagca
      121 tgaggtcgag cacgacgagc gccgggcggt ggcgctcgat cgcgtcgagg gcggcggggc
      181 cgtccgcggc ggtcacgacc gagaagccgt cgcgctccag gtaggtgcgc acgagccgga
      241 cgatcttggc gtcgtcgtcg acgacgagga tcgggcggtc ggggagcggc gttgcaggtg
      301 gcctgggcat cggcagcatg gtaccgatcg atgctaggcg gcctccgtga cgggggcgtg
      361 acggccgtcg aacgaggcgt cggggtccgc acccaggggt tgattcgata gaacaaatgt
      421 tctatcttgg atgtccgatg gcgaccctct ccgcggacgt gacggcagcc gtggcgagcc
      481 tccaggctcg ctggggagcc gcagctccgc ggatcaccga cggcgccctt gcgctggcgc
      541 cggcctcggc ctcggcgccg gtcctcgccc cgctcgaacc cgcgacgaga ccggatcccg
      601 acgagcggat cgtccggacc ggcttcgccg ctctcgacgc catcctgggc ccgggcggcc
      661 tgccgcgctc ggcgagcgtc gcgctccgtg gcgacggctc gagcggccgg accacgctcg
      721 cccaccggct cgccgcggaa gcccagtcga cgggcgccat cgtggcctgg gtcgacctcg
      781 cccggagctt cgacccgatc gaggccgtcg cccgcggcgt ccggctcgag tggctggtgg
      841 tcatcacccc ggaaacgctc gacgaagggc tggccatcgg tggcgcgctg ctggccgggc
      901 gttcggtcga cctgctcgtc ctggacctgc ccgccggacg cctgcccgcc acggaccggc
      961 cggctcgcct ggccgaccgg ctcaaccgcc tcgccgccct ggccaggcgc tcggagacgc
     1021 tcttcgtggt gctcgagcca ccgggcctga ccggccacct ggcgagcgcc gtggccggat
     1081 cgaccgggct ccggctggag ctcgcccgcc gctcgtggat ccggcttggg cgcgatgtcg
     1141 tgggccagcg cacggaggcg ctggtcgccc gcaatcgcta cggcccgccg gggcgccggg
     1201 cgacgctccg gatcctctac gcggacggcg gtgaacgtga cacctgcctc cgccgggacg
     1261 acctcctcgc caccgaccag gcccccgatc cagcccccgc gatccatgtg gaacggactc
     1321 agcacgatgc gactcctcca tctctaccga ccgcacctcc ccctcgagct cgcccgggcc
     1381 cgagcctccg agcccttccc gcccggcccg cgcatcctgg gcggccggcc gtgggatccg
     1441 gggccggtcg tggacgccga cccggcggcg cgggccctgg gggtccggcg cgggatgccg
     1501 ctcgggagcg cccatcggct cgttcctgag gcgtgcttcg tcgaccccga tcccgacgcg
     1561 gaccgggcga tcgccgagcg tgccttcgag gcgctcgccg cgttcagccc ggggatcgcc
     1621 gggagcgccg atcccgcgga tccggcgttc gggctgttcg aggtccagat cgacggactc
     1681 gagccgctct gggggccgga gccggccctg accggcaggc tggttgcggc gctggggcgg
     1741 gcgctgggtg gcacgcccga cggtgcgggc accgccggcg ccgatggcga gatccgtgcc
     1801 gggatcgccg ggacccggtt caccgcgacg atcgccgcgg tgcgggctcg cccggccgag
     1861 ccgatcgccg ttcccgtcgg cggcgaggcc gcctttctgg ctccgctgcc gtcgggcctg
     1921 ctcacccagg accccgacgt ccgggccagg ctgaaccggt tcggcctgcg ccggatcggg
     1981 ccggtcgccg agctggaccg gtcggccctg gtggcccggt tcggggagga gggcgcgagg
     2041 atccatgccc gggcccgtgg cgaggagctg gatcccttcc ggccgcgacg ggccccggag
     2101 cacctggcgc tcgggctgcc catcgagcca tcggccgagg acctcgagcc gctgcgcttc
     2161 gtgctccatc gcctggccgt cgccctgacc ggccagatcg tgtcgcgcgg gctggcggcc
     2221 gcccgggcac acctgcatct cgacctcgac ctcgcgttcg ccgggtccgg gacgccatcg
     2281 accctcgacg tggagcaacg ctttcccgag ccgaccgcgg acgccgaggc gatcgagcgc
     2341 ctgctgttcg cccggctcga gcggacgccg ccgccggccg ccgtcgcccg gctcggcctg
     2401 gagctggacg gcacgacccc ggcggccggt cagcagctcc cgctgttcaa cccgcaggcc
     2461 gcccggggcg cccggctcga gtggcagctt gcccggctgg ctctgacata cggtgaggat
     2521 cgggttcggc gggtcgacct catcgatccg gaagcgccgt tgtcggaggc ccgctggacc
     2581 tggcgcccgg tggtggcgcc atgacccggc tgctgcgcga gcacccgccg atcgaggtgg
     2641 agctggatcc ggccggcgat ctcgtggcga tccgctggaa cggccggcgc gaggtcgtcg
     2701 aggtctgcaa ccagtggcgg gtcgaggagg cctggtggcg ggggccgatc gcgcgcgact
     2761 acttcaaggt cgccggaaac cgctggctgg cgctcgtcta tctcgaccgc atcgacaact
     2821 cctggcatct ggagcgtgtc tacgactgag gcgcctgcca tggcggcaca tcgccgcacc
     2881 gttcgcgggg tcccattgcg ctgctcctgc tcgacgcttc agaaccatca acggcaagga
     2941 cccgaagccg ccgtcctgga cccgacaggc cagagacttt cgcgcgactg caatgccaag
     3001 cccccgaacg gatggcggtg cgcggtcgtt cctactagaa agagcctggc gcaacaccaa
     3061 ctggagcctc gcggatgaca cctcaacagg ccgacgccgg cgttatcgag ctggtgctgc
     3121 ccgagggtgg tcacgtcttg gtcgatttcg ggaacgatgg tccgcgcccc gacctggaag
     3181 cgagcgtggt cgagatgatg ctcacctccg gcggcaccgc cgagaatgtc tgccagacgc
     3241 tctcggacta tgcggaggct tcgggtctgt cggcgcggtt cttcctggga cgcgacgtag
     3301 tgatcgtcga gatggtgtcg gcctagggcg atcaggtggt gttctcgcac cggctgatgg
     3361 gtactcgccc cggtccgctg aacccaccga gatgcacgtc agccgagggt ccggcagttg
     3421 gcgacgcgct cagacccgat cgatgccgat gcggcgtcga ctcgtgcgtc agcgcatcgg
     3481 cgccccgagc atgaccgcga cgatgaagag gacgaggaag acgcccacaa cgagt
//
LOCUS       DATDDI010000083         6601 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_168069, whole genome shotgun sequence.
ACCESSION   DATDDI010000083 DATDDI010000000
VERSION     DATDDI010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 6601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6601
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168069"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /locus_tag="VIU37_01230"
     CDS             <1..1275
                     /locus_tag="VIU37_01230"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEY6012589.1"
                     /translation="LGISTVYQEVNLCPNLTVAENLLIGREPRRRGRVDWNGMNRRAR
                     EVLRSLDIEIDVTRPLGSYSVAIQQMAAIARALVISSARVLVLDEPTSSLTVHETEQL
                     FAVMRKLRDEGIAIVFITHFLEQVYEVSDRVTVLRNGNLVGTYRTAGLPRMELITLML
                     GRTLSELDEIIRHKMESSQHIGAEALLEARGLGSAGTLEPFDLVLHAGEVVGLAGLLG
                     SGRTELAQLLFGIDRPTDGTLEMDGRPIQSFSPIRSIERGIALCPEDRKAEGIVAELT
                     VRENIILAMQASRGWFRRLSSSQQTAIAERYIKLLNIATPSPEQPVQNLSGGNQQKVI
                     LARWLATEPRLLILDEPTRGIDVGTKADIQQLVLSLAEGGMSCMFISSELDEVLRTSH
                     RIVVMRDRVKGAEFAGEVDEQAIMEAIAGGAA"
     gene            1293..2366
                     /locus_tag="VIU37_01235"
     CDS             1293..2366
                     /locus_tag="VIU37_01235"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6012590.1"
                     /translation="MDLGRLTESRLFIPCLALGLILVFDFIFIRGFFNLELKDGHLYG
                     SLVDILRNSAPTVILAIGMTLVIATGGVDLSVGATMAIAASVACILIDPRIVGVNLQG
                     DITSVVGDPTYSFVPMPLVILVPLFVAILCGVWNGLLVSYFRIQPMVATLVLMIAGRG
                     IAQLITNAIKIIIFNDAFAYIGNGFIILPFSLYIVAAVFVAAWLFTRRTAIGLFIESV
                     GANFRSSFYSGIDEKRVKMFAYAFCGLCAGIAGLIAVSSIRTSDANQIGLYSELDAIL
                     AVVIGGTVLGSGGRFSLLGSAIGGLIIQATTTSMYAIGVPASAILAVKAVVVILVILL
                     YSQQAQDVIRGIEARARRRGVAA"
     gene            2363..3991
                     /locus_tag="VIU37_01240"
     CDS             2363..3991
                     /locus_tag="VIU37_01240"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012591.1"
                     /translation="MIESLGTRLSNNRRFLPLSATAFLFAVAYVLGAFSFTAMRDGQA
                     FFNLFITTPFLLISVVGETFVIISGGIDLSVSGVIALTTVASAALLQQGWDPWVVMPL
                     MLVMGVSIGAIMGFFITYLKVQPFIATLAGMWFARGMCYVISDSEIRIYNPTYRLLSG
                     TKILIPGLADPVTKRGDYVTILVIVALAVLAAGMYIAQFTRFGRTVYAMGGNNGANEQ
                     SARLMGLPVDRTKLKVYMLNGFCSALAGIAYSIYVGSGHGTHATGLELTVIAAVVIGG
                     TALTGGEGYVLGALFGVLITALIQSIIQFNGQLSSWWTSIVIGGLMLVFIGVQSLLAT
                     LNTRQLTRARLGGAGGGAAAAGRRRPRWRDRRVAIGAAAVVIAVLGAQVLGILPGGQA
                     SPTGSGGGRSEAGCTLKAFRQDQAATLAGGGAVIVYERNGGSNCVDELYAIYADGRIT
                     GDDGTQKLEAQISADQVASLLSDIDGLGWFTDDMYSTNHTPCGQCYTYFTSVTLHGNQ
                     KTVEAVDGGTDAPAKYWLVSGKLAGILPKFSPLP"
     gene            4012..4917
                     /locus_tag="VIU37_01245"
     CDS             4012..4917
                     /locus_tag="VIU37_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012592.1"
                     /translation="MRSVRGVALVACTLLLGACGYIVTPADESSPTPRAAGLWTAVAT
                     AVSQADGGLHVDLAIRNDTGDWSAMKATAGGVTVTTGDGKTSPCATAFVGTGGTSLAP
                     GFQMRGYTGGTKAEQETQPLFVECAGVAPAAGSRLAVSYTYTTGEFNYYSPAPPSSGR
                     LEVDLDKPVADLTYPVAEPVEGLIQKAADPIEAINKCALTLTSITRTGEELAFSWHTE
                     NPTAYPTYVHIGTPPVIGSDGIIYGFYESPHLADTPITPAGEHADWTTTVAVPKDVTN
                     LYILLSVESKAQKNFVSHAIDITDK"
     gene            4929..6434
                     /gene="araA"
                     /locus_tag="VIU37_01250"
     CDS             4929..6434
                     /gene="araA"
                     /locus_tag="VIU37_01250"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF002795.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008733 - L-arabinose isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0005996 - monosaccharide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HEY6012593.1"
                     /translation="MKPLGELEVWFVTGSQEMYGEETLRQVAENSALVARRLDESPAI
                     PVRVVHRPVVTSSESIAATCRAANAADGCVGVILWMHTFSPARMWIAGLQALQKPLLH
                     LHTQFNRDLPWGEIDMDFMNLNQAAHGDREFGYIETRLRIARKTVAGHWQDPYVADRI
                     GAWSRAACAWREAHHLKVARFGDTMRHVADTEGDKVEAQVRLGITVNGFGVGDLTAAI
                     ADVPDSAIDDLCARYESDYALAPELCPDGPRRAELREAARIEAGLRGFLEAGGFMAFT
                     DTFEDLGALRQLPGIAAQRLMADGYGFGAEGDWKTSALVRLVKVMATGLPGGTSFMED
                     YTYHLNPNGPSVLGAHMLEVCPTIAAARPRCEIHPLSIGARSDPVRLVFDAATGPAFV
                     AGMTDLGDRFRIVANVIDIVGGAQPLPRLPVARAVWRPRPDLRTAVEAWLTAGGAHHT
                     VLSRAIDPEPLADFADMAGIELNLIDGSTTVAGFRKELRWNAAYHHLTRAL"
BASE COUNT         1039 a         2328 c         2194 g         1040 t
ORIGIN      
        1 ctgggcatca gcaccgtcta ccaggaagtc aatctctgcc cgaacctgac ggtggccgag
       61 aacctgctga tcggtcgcga accgaggcgc aggggccgcg ttgactggaa cgggatgaat
      121 cgccgtgccc gggaggtcct ccgaagcctc gacatcgaga tcgacgtcac ccgcccgctc
      181 gggtcctact cggtcgcgat ccagcagatg gcggccatcg cccgggcgtt ggtgatctcg
      241 tcggcacgcg tgctcgtgct cgacgaaccg acctccagcc tcacggtcca cgagacggag
      301 cagctcttcg cggtgatgcg caagctgcgc gacgagggga tcgccatcgt cttcatcacc
      361 catttcctcg agcaggtcta cgaggtgagc gaccgggtaa cggtcctccg caacgggaac
      421 ctcgtcggca cttaccggac cgccgggctg ccgcgcatgg agctcatcac gctcatgctc
      481 gggcgcaccc tcagcgaact cgacgagatc atccggcaca agatggagag cagccagcac
      541 atcggcgccg aggccctgct ggaggcccgc ggcctgggtt cggcggggac gctcgagccg
      601 ttcgatctcg tgctccacgc cggcgaggtg gtggggctcg ccggcctgct cggctcgggc
      661 cgcaccgaac tcgcacagct gctgttcggt atcgaccggc cgaccgatgg cacgctggag
      721 atggacggtc gtccgatcca gtccttctcg ccgatccggt cgatcgagcg cgggatcgcg
      781 ctctgcccag aggatcgcaa ggccgaggga atcgtcgccg agctgacggt cagggagaac
      841 atcatcctgg cgatgcaggc gagccgcggc tggttccgcc gcctcagctc cagccagcag
      901 accgcgatcg ccgagcgcta catcaagctg ctcaacatcg cgacgccctc gccggaacag
      961 ccggtccaga acctgagcgg gggcaaccag cagaaggtga tcctggcgcg ctggctcgcg
     1021 accgagccgc ggctgttgat cctcgatgag ccgacccgcg gcatcgacgt cgggaccaag
     1081 gccgacatcc agcaactggt cctgtcgctg gctgagggcg ggatgtcctg catgttcatc
     1141 tcgtcggagc tcgacgaggt cctgcggacc agccatcgca tcgtcgtcat gcgcgaccgg
     1201 gtcaaaggcg ccgagttcgc cggcgaggtc gatgagcagg cgatcatgga agccatcgcc
     1261 gggggtgcgg cgtgaaccgt cggcgcggcg ccgtggacct gggccgcctc acggaaagcc
     1321 gcctgttcat cccgtgcctg gcgctcggcc tgatcctggt cttcgacttc atcttcatcc
     1381 gcgggttctt caacctcgag ctgaaggacg gccacctgta cggcagcctc gtcgacatcc
     1441 tgcgcaacag cgcgccgacc gtgatcctcg ccatcggcat gacgctggtc atcgccaccg
     1501 gtggcgtcga cttgtcggtc ggcgccacca tggccatcgc cgcctcggtc gcgtgcatcc
     1561 tgatcgatcc ccggatcgtc ggagtcaacc tgcagggcga catcacctca gtcgtgggtg
     1621 acccgaccta cagcttcgtc ccgatgccgc tcgtgatcct ggttccgctc ttcgtggcca
     1681 tcctgtgcgg ggtctggaac gggctgctcg tgtcctactt ccgcatccag ccgatggtgg
     1741 cgacgctggt cctgatgatc gccggccgcg gaatcgccca gctcatcacc aatgcgatca
     1801 agatcatcat cttcaacgac gcgttcgcgt acatcggcaa cggcttcatc atcctgccgt
     1861 tctcgctgta catcgtggcc gccgtcttcg tggctgcgtg gctgttcacg cgccgcaccg
     1921 ccatcgggct gttcatcgaa tcggtcggcg ccaacttccg atcgagcttc tacagcggga
     1981 tcgacgagaa gcgggtcaag atgttcgcct acgcgttctg cggcctgtgc gccgggatcg
     2041 ccggcctgat cgcggtctcg agcatccgga cctccgacgc caaccagatc ggcctgtact
     2101 ccgagctgga cgcgatcctc gcggtcgtga tcggcgggac cgtcctcggc tccggcgggc
     2161 gattctcgct gttgggcagc gcgatcggtg gcctgatcat ccaggccacg acgacctcga
     2221 tgtacgccat cggcgtgccg gccagcgcca tcctggcggt caaggcggtc gtggtgatcc
     2281 tggtgatcct gctctactcg cagcaggccc aggacgtgat ccggggcatc gaggcgcgcg
     2341 cccgacgtcg cggggtcgcc gcatgatcga gtcgctcggc acccgcctgt cgaacaaccg
     2401 gcggttcctg ccgctgagcg cgaccgcgtt cctgtttgcc gtcgcctacg tgctcggggc
     2461 gttctcgttc accgcaatgc gggacggcca ggccttcttc aacctgttca tcaccacgcc
     2521 gttcctgctg atcagcgtgg tcggcgagac gttcgtgatc atctcgggcg ggatcgacct
     2581 gtcggtcagc ggggtgatcg cgctgacgac ggtcgcctcc gcggcgctgc tccagcaggg
     2641 ctgggacccg tgggtcgtga tgccactgat gctggtgatg ggcgtcagca tcggcgcgat
     2701 catgggcttc ttcatcacct acctgaaggt ccagccgttc atcgccacgc tcgccggcat
     2761 gtggttcgcg cgcggcatgt gctacgtgat cagcgacagc gagatccgga tctacaaccc
     2821 cacctaccgg ctgctgtcag ggaccaagat cctgatccct ggtctcgccg acccggtcac
     2881 caagcggggc gactacgtca ccatcctggt catcgtggcc ctggccgtcc tggccgccgg
     2941 catgtacatc gcccagttca cccgattcgg gcgcacggtc tacgcgatgg gcggcaacaa
     3001 cggggccaac gagcagtcgg cccggctgat gggcctgccc gtcgatcgga ccaagctcaa
     3061 ggtctacatg ctcaacggct tctgctcggc cctggccggg atcgcctaca gcatctacgt
     3121 gggatccggg cacggcaccc acgcgaccgg cctcgagctg accgtgatcg ccgccgtcgt
     3181 catcggcggg accgcgctca ccggcggcga gggatacgtg ctcggcgccc tgttcggcgt
     3241 cctcatcacg gccctgatcc agagcatcat ccagttcaac gggcagctca gctcgtggtg
     3301 gacgagcatc gtcatcggcg ggctgatgct ggtgttcatc ggcgtccaga gcctcctcgc
     3361 cacgctcaac acgaggcaac tgacgcgggc gagactgggc ggcgcgggag gcggcgcagc
     3421 ggcggccggg cggcgccgtc cgcgatggcg tgatcggcgc gtggcgatcg gggcggccgc
     3481 cgtcgtgatc gcggtcctcg gcgcgcaggt cctcgggatc cttcccggcg gtcaggcgag
     3541 cccgacggga tcgggcggcg ggcggtccga ggcgggctgc acgctcaagg cgttccggca
     3601 agaccaggct gcgaccctgg ccggcggcgg cgccgtcatc gtctacgagc gaaacggagg
     3661 ctccaactgc gtggacgagc tgtacgccat ctacgccgac ggccgcatca cgggcgatga
     3721 cggcacgcag aagctcgagg cgcagatctc ggccgaccag gtggcgagcc tgctgagcga
     3781 catcgacggc ctcggctggt tcaccgacga catgtactcg accaatcaca cgccgtgcgg
     3841 ccagtgctat acgtacttca cgagcgtgac gctgcatggc aatcagaaga cggtcgaggc
     3901 cgtcgacggc ggcaccgacg ccccggccaa gtactggctc gtctccggca agctggccgg
     3961 gatcctgccc aagttcagcc ccctgccgtg aacgccccga cagcccgcgg gatgcggtcg
     4021 gtccgaggtg tcgcgctcgt ggcgtgcacc ctgttgctcg gcgcctgcgg ctacatcgtc
     4081 accccggcgg acgaaagcag cccgacgccc agggcggcgg gactctggac cgcggtcgcc
     4141 accgcggtca gccaggccga cggcggcctg cacgtggacc tcgccatccg caacgacacc
     4201 ggcgactgga gcgccatgaa ggcgaccgcg ggcggcgtca ccgtgaccac gggcgacggg
     4261 aagacgagcc cgtgcgcgac cgccttcgtc ggcaccggcg gcacgagcct ggcgcccggg
     4321 ttccagatgc gcgggtacac cgggggcacg aaggccgagc aggagacgca gccgctcttc
     4381 gtcgagtgcg cgggagtggc gccggcggcc ggctccaggc tcgccgtcag ctacacctac
     4441 acgaccgggg agttcaacta ctactcgccg gcgccgccgt cgagcggcag gctcgaggtc
     4501 gatctcgaca agccggtcgc cgacctcacg tacccggttg cggagccggt ggagggcctc
     4561 atccagaagg ccgccgaccc gatcgaggcg atcaacaagt gcgcgctgac gctgacgtcc
     4621 atcactcgga cgggcgagga gctggcattc tcgtggcaca cggagaaccc gaccgcctac
     4681 ccgacgtacg tccacatcgg cacgccaccg gtgatcggct ccgacggcat catctacggc
     4741 ttctacgaga gcccgcacct ggccgacacc ccgatcacgc cggccggcga gcacgccgat
     4801 tggacgacga cagtcgccgt gcccaaggac gtgaccaacc tgtacatcct tctcagcgtc
     4861 gagtccaagg cgcagaagaa cttcgtcagc cacgccatcg acatcacgga caagtagtga
     4921 gtgacctcat gaaaccgctc ggcgagcttg aagtctggtt cgtgaccggc agccaggaga
     4981 tgtacggcga ggagaccctg cgccaggtcg ccgagaactc ggccctggtc gcgcgccggc
     5041 ttgacgagtc gccggccatc ccggtgcggg tcgtccaccg acccgtggtc acctcgtcgg
     5101 agagcatcgc cgccacgtgc cgcgccgcca atgccgcgga cggctgcgtc ggggtgatcc
     5161 tgtggatgca caccttctcg cccgcccgga tgtggatcgc cggattgcag gcgctccaga
     5221 agccgctgct ccacctccac acccagttca accgcgatct cccgtggggc gagatcgaca
     5281 tggacttcat gaatctcaac caggcggctc acggcgaccg ggagttcggc tacatcgaga
     5341 cgcgactgcg gatcgcccgc aagaccgtcg ccgggcactg gcaggacccg tacgtcgccg
     5401 accggatcgg tgcctggtcg cgcgccgcgt gcgcgtggcg cgaggcccac cacctcaagg
     5461 tggcgcgctt cggcgacacg atgcgccacg tcgccgacac cgagggcgac aaggtcgagg
     5521 cgcaggtccg gttggggatc accgtcaacg ggttcggcgt cggcgacctc acggccgcga
     5581 tcgccgatgt ccccgactcg gcgatcgacg acctgtgcgc ccggtacgag tcggactacg
     5641 ccctggctcc ggaactctgc ccggatggcc cgcgacgggc ggagttgcgc gaggccgccc
     5701 ggatcgaggc cggcctgcgc gggttcctcg aggcgggcgg gttcatggcc ttcaccgaca
     5761 ccttcgaaga cctcggcgcc ctgcgccagc tgccggggat cgccgcgcag cggctcatgg
     5821 ccgacggcta cggcttcggg gcggaagggg actggaagac gtcggccctg gtccgcctgg
     5881 tcaaggtgat ggcgaccggc ctcccgggcg ggacctcgtt catggaggac tacacctacc
     5941 acctcaaccc gaacggcccg agcgtgctgg gggcgcacat gctcgaggtc tgcccgacga
     6001 tcgccgccgc tcgcccgcgc tgcgagatcc acccgctgtc gatcggcgcg cggtccgacc
     6061 cggtccggct ggtcttcgac gccgcaaccg gcccggcgtt cgtggccggg atgaccgatc
     6121 tcggcgaccg cttccggatc gtggccaacg tcatcgacat cgtcggcggc gcgcaaccgc
     6181 tgccccggtt gccggtcgcc cgcgccgtgt ggcgcccgcg acccgacctg cggaccgcgg
     6241 tcgaggcctg gctgacggcc ggcggcgcgc accacacggt gctgagccgg gccatcgatc
     6301 ccgagccact ggccgatttc gccgacatgg cagggatcga actcaacctc atcgacggca
     6361 gcacgacggt cgcgggcttc cgcaaggagc tccgctggaa cgcggcctac caccacctca
     6421 ccagggccct gtagcggctc ctggccccgc ggtctcgcct cgcccggcac ctcctcgcac
     6481 gggcggggcg ggatcgtccc cggccccaca gatcgccgcc gaaattcgac cttgacaagt
     6541 tacttagtac tcactaagct tcggtcgtga tcaagaccag cacgcgtctg acagccgagg
     6601 a
//
LOCUS       DATDDI010000084         2137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_126506, whole genome shotgun sequence.
ACCESSION   DATDDI010000084 DATDDI010000000
VERSION     DATDDI010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126506"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(443..940)
                     /locus_tag="VIU37_01255"
     CDS             complement(443..940)
                     /locus_tag="VIU37_01255"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY6012594.1"
                     /translation="MTRATIATELGDIDVELFDESAPKAAGNFIDLARKGFYDDVVFH
                     RVIPGFVAQAGDGQYGKKSSLERGRVGTGGPGYKFEDEKVQGDYVRGALAMANAGPNT
                     NGSQFFICHQDLTGKLPKNYTLFGQVTRGMDVVDKIVSAPRDSRDFPDQPVAMTSVTV
                     HEDEG"
     gene            complement(972..1646)
                     /locus_tag="VIU37_01260"
     CDS             complement(972..1646)
                     /locus_tag="VIU37_01260"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY6012595.1"
                     /translation="MIPRSIRRTATPGVVLALALGLAACQAATVTPAPTVGPSVAGSS
                     AAAGAACPTTQPPALGKGETRTVSIETAKGTFAIKIEADLSPIAAGNFVALAGCGFYD
                     GVVFHRVATLPDGTPFVIQGGDPTGTGTGGPGYSIQDEPVTAAYKRGTVAMARTSAPN
                     SVGSQFFIVLDDKDQPVLAQYNTYQIIGSVSAGMDTVDAIYAAAGGQEQPADPVAMTK
                     VTVSNP"
     gene            complement(1643..>2137)
                     /locus_tag="VIU37_01265"
     CDS             complement(1643..>2137)
                     /locus_tag="VIU37_01265"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEY6012596.1"
                     /translation="IATRIAVPLQLAGGLESAEAIRLAFAAGATRVVLTTAIADRRDE
                     LRDCLAVAGDWLAVGLDPRPERLAAFPWRRSAPPTLDELIGELVGAGVARLVLSHGGT
                     EPDLALTRRLVSSYDAEILVAGGVRDLDGLRRLRDTGVGGVILGEALLSGAIDYPAAL
                     EAAA"
BASE COUNT          312 a          742 c          735 g          348 t
ORIGIN      
        1 tcatggaggt cccgcccatc accgcgaccg agctgcgata ggtgtagccg cggatcgtga
       61 ccttgacctt gggtcgcttc ccggcgccaa gggcgtcgac gatgtcggct ggaacctcga
      121 tccccgccgc ggtcttgcca ctctgcagga tggtcgtgcg aaagcgcatg tggtgcctcc
      181 cgccgtggtc ttcaggcccc ggaaatgccg aagcggctcc cgaaggagcc gcttcgatgc
      241 tgtcccggta aaggtgcccg ccgaggcgaa cacttctgcc gcgcgtcaag agcatctatc
      301 acgtcggctg caccgactac cctgacccta cctacccatg accttgacgc tggggcagcg
      361 tggctgtttg agcagcacgg atatcctacc cgacgaaggg ccgttttcca agggttttgt
      421 cacaccggag tgtgtaaatt ccttaacctt cgtcctcgtg gaccgtgacg gaggtcatgg
      481 ccacgggctg atcgggaaag tcgcggctgt cgcgcggcgc cgagacgatc ttgtccacca
      541 cgtccatgcc ccgggtgacc tggccgaaca gggtgtagtt cttgggcagc ttgccggtca
      601 ggtcctggtg gcagatgaag aactggctcc cgttcgtgtt cggtccggcg ttcgccatcg
      661 ccagcgcgcc ccgcacgtag tcgccctgga ccttctcgtc ctcgaacttg tagcccgggc
      721 cgcccgtgcc gacccgtccg cgctcgagcg acgacttctt gccgtactgc ccgtcgccgg
      781 cctgggcgac gaagcccggg atcacgcgat ggaagacgac gtcgtcgtag aaccccttgc
      841 gggcgaggtc gatgaaattg cccgccgcct tcggggcgct ctcgtcgaac agctcgacgt
      901 cgatgtcccc gagctcggtg gcgatggtgg cacgagtcat gaccggctcc ttccgtctgg
      961 cttcaactgg ctcatgggtt gctgaccgtg accttggtca tggcgaccgg atcggccggc
     1021 tgctcctggc cgcccgccgc ggcgtagatg gcgtcgaccg tgtccatccc cgccgacacc
     1081 gatccgatga tctggtacgt gttgtactgg gcgaggaccg gctggtcctt gtcgtcgagg
     1141 acgatgaaga actgcgatcc gaccgagttc ggcgcggatg tccgggccat cgccaccgtg
     1201 ccgcgcttgt aggccgcggt caccggctcg tcctggatcg agtagccggg gccaccggtc
     1261 ccggtacccg tgggatcgcc cccctggatc acgaacggcg tgccgtccgg gagcgtcgcg
     1321 acccggtgga agaccacccc gtcgtagaag ccgcagccgg ccagggcgac gaagttcccc
     1381 gccgcgatcg gcgacaggtc ggcctcgatc ttgatggcga acgtgccctt ggccgtctcg
     1441 atgctgacgg tccgggtctc gcccttcccg agcgccggcg gctgggtcgt cggacaggcc
     1501 gcgccggctg ccgcggacga gcccgcgacc gacggaccga cggtcggtgc cggcgtcacg
     1561 gtcgcggcct ggcaggcggc cagaccgagc gccagcgcca ggacgacgcc gggcgtggcc
     1621 gttcgacgga tggaacgagg gatcatgcgg cggcctccag ggctgcggga tagtcgatgg
     1681 cccccgacag gagggcttct ccgaggatca ccccgcccac gccggtgtcg cgcaggcgac
     1741 gcaggccgtc gaggtcgcgg accccgccgg ccaccaggat ctcggcatcg tacgacgaga
     1801 cgagcctgcg ggtcagcgcg aggtccggtt ccgtgccgcc gtgactcagc acgaggcggg
     1861 cgacgccggc cccgaccagc tccccgatca gctcgtcgag ggtcggcggc gcgctccgcc
     1921 gccaggggaa cgcggccagt cgctccggtc gcggatccag tccgaccgcc agccagtcac
     1981 cggcgacggc caggcagtcg cggagttcgt cccgtcggtc ggcgatggcc gtcgtgagca
     2041 ccacccgggt cgcaccggct gcaaaggcca ggcggatggc ctcggccgac tcgagacctc
     2101 cggcaagctg gagcgggacc gcgatccgcg tcgcgat
//
LOCUS       DATDDI010000085         1692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_501100, whole genome shotgun sequence.
ACCESSION   DATDDI010000085 DATDDI010000000
VERSION     DATDDI010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501100"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VIU37_01270"
     CDS             <1..586
                     /locus_tag="VIU37_01270"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012597.1"
                     /translation="VIVGIFVMNNYAWPEALAHQYAIDHNIAEPPGGLVIPVGIAYPV
                     LIALGVMLVMTYLATRRRFGRYVFSIGGNPDAAELGGINVRRTLTLTFVLMGMLTALS
                     AAVQTARLNSAVTNLGTQAELDVISAAVIGGTSFSGGIGTIPGAVLGAVVMQSLRSGM
                     LLLRADSPTQDIVVGAVLVAAVGVDTYFRNRGSR"
     gene            583..1422
                     /locus_tag="VIU37_01275"
     CDS             583..1422
                     /locus_tag="VIU37_01275"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6012598.1"
                     /translation="MSAMEGSPTAMDATQAQPSAPPRPTLVEMRDINVAFGGVHAVRE
                     VTIDLRAGEVVGLVGGNGAGKSTLMRVLSGAHPADSGEVMVDGKPATISNPRDAKTYG
                     IETIYQTLALADNIDAPGNMFLGRELTDRTGTLDDAAMESATRKVMGRLNPNFKNFKT
                     AVMSLSGGQRQSVAIARAVHFNARILIMDEPTAALGPAETEQVRALIRQLKSEGIGIF
                     LISHDIHDVYDLSDRIAVMYHGRIVGMVNKDEVTTDEVLAMIIMGKPLEKVTSEEIAQ
                     LHG"
BASE COUNT          269 a          600 c          569 g          254 t
ORIGIN      
        1 cgtcatcgtc ggcatcttcg tcatgaacaa ctacgcctgg ccggaggcgc tggcccacca
       61 gtacgcgatc gaccacaaca tcgccgagcc accgggcggc ctcgtgatcc ccgtcggcat
      121 cgcgtacccg gtgctgatcg ccctcggggt catgctggtg atgacctacc tcgcgacccg
      181 ccggcgcttc ggccgctatg tcttctcgat cggcggcaac ccggacgcgg ccgagctggg
      241 cggcatcaac gtccgccgga cgctgacgct cacgttcgtg ctcatgggca tgctcaccgc
      301 gctcagcgcc gcggtccaga ccgcacggct caactccgcc gtgacgaacc tcgggacgca
      361 ggccgagctc gacgtcatct cggcggccgt catcggcggc acgtcgttct ccggtggcat
      421 cggcacgatc ccgggcgcgg tactgggcgc cgtggtcatg cagtcgctgc gctcgggcat
      481 gctcctgctg cgtgccgact cgccgaccca ggacatcgtc gtcggtgccg tgctcgtcgc
      541 ggccgtcggc gtcgacacct acttccggaa ccgaggctcg cgatgagcgc gatggagggc
      601 agcccgaccg cgatggacgc aacccaggcg cagccgtccg cgccgccccg cccgaccctc
      661 gtcgagatgc gcgacatcaa cgtcgcgttc ggcggcgtcc atgccgttcg ggaggtcacg
      721 atcgacctcc gggccggcga ggtcgtcggt ctcgtcggcg gcaacggggc gggcaagtcg
      781 acgctcatgc gcgtcctgtc tggcgcccat cccgccgatt cgggcgaggt catggtcgac
      841 ggcaagccgg cgacgatctc gaacccgcgc gacgcgaaga cctacgggat cgagacgatc
      901 taccagacac tcgccctggc cgacaacatc gacgcgccgg gcaacatgtt cctcgggcga
      961 gagctgacgg accggacggg aacgctcgac gacgcggcga tggaatccgc gacccgcaag
     1021 gtgatgggcc gcctcaaccc gaacttcaag aacttcaaga ccgcggtgat gtcgctgtcc
     1081 ggcggccagc gccagtcggt ggccatcgcc cgggcggtcc acttcaatgc ccggatcctg
     1141 atcatggacg aaccgaccgc cgcgctcgga ccggccgaga ccgagcaggt ccgcgccctg
     1201 atccgccagc tcaagagcga ggggatcggg atcttcctga tcagccacga catccacgac
     1261 gtgtacgacc tgtctgaccg gatcgccgtg atgtaccacg gccggatcgt gggcatggtc
     1321 aacaaggacg aggtgaccac ggacgaggtg ctggccatga tcatcatggg caagccgctc
     1381 gagaaggtca ccagcgagga gatcgcccag ctccacggct gaggacttgg cggtcaacgc
     1441 ggctgtcgcg cctggacgcc caggcgtgcg ttgccgcctg cgctcctcgc tcacgcacct
     1501 gcagtgcgct cgctccggtg ctcggcggcg ccttcgcctg gacgcccggg cgcgacgaac
     1561 gtagtcgcgg gcgccaaggg acgagggctg ttgcggctgg acgcccgggc gcgacgaacg
     1621 tagttgcgcg ctgaacgcgc gcgcggctat gccttggacg agcggtccgt ggtccagatc
     1681 acctggttga cc
//
LOCUS       DATDDI010000086         4112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_397061, whole genome shotgun sequence.
ACCESSION   DATDDI010000086 DATDDI010000000
VERSION     DATDDI010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4112
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397061"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VIU37_01280"
     CDS             complement(<1..219)
                     /locus_tag="VIU37_01280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012599.1"
                     /translation="MDDLPEPELRPVPGSARGLGRIAVDLSDVVDRGTRRRAGVFRRA
                     LRREATRARDPHRIAAIILLSLTFALILS"
     gene            380..1216
                     /locus_tag="VIU37_01285"
     CDS             380..1216
                     /locus_tag="VIU37_01285"
                     /EC_number="3.4.15.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009057 - macromolecule catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycinase"
                     /protein_id="HEY6012600.1"
                     /translation="MADGTVIIIGGAEDKVRDRVILNRFVALAGGPDATIAVISTASS
                     LGMEAGERYRAVFAELGVKRVRPLHTVTRPQANDDTATRAVHDATGIFLTGGNQLRLS
                     STIGGTRLADAILERFQHGAVVAGTSAGASAMSSHMIAFGASGATPKHRMAQIAAGLG
                     LLPGVIVDQHFQQRNRLGRLLSLIAQNPSLLGLGVDEDTAGVVGPDHVMEVIGRGSIT
                     VVDGATSETDAWEIHGHRPLMISGVVLHSLPAGYRFDLRSRERVASPVLHALPGAEAA
                     SS"
     gene            1259..4111
                     /gene="cphA"
                     /locus_tag="VIU37_01290"
     CDS             1259..4111
                     /gene="cphA"
                     /locus_tag="VIU37_01290"
                     /EC_number="6.3.2.29"
                     /EC_number="6.3.2.30"
                     /inference="COORDINATES: protein motif:HMM:NF010623.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0051235 - maintenance of location [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY6012601.1"
                     /translation="MTQAVPASRSRRQPRRAAASVPSGPAPTLRILETRVLRGPNYWA
                     REPVVRLLVDLGVLEQYPTNKLPGFTDALVALLPTLEDHACSLGRRGGFITRLRDGTW
                     VGHVAEHVALEFQNLAGTDVRHGKTRGAGPVGQYNCIYEYREEQVGLEAGRMAVRLVN
                     HLVAPDDPEVFFDFAPELEHLIRLAERQAFGPSTQALIDEAVSRDIPFIRLDRHSLVQ
                     FGHGVHQQRIRATMTSRTSAIAVDIASDKSLTNQLLDSAGLPVSHAQVVDSADAAAAA
                     ATRVGFPCVVKPLDGNHGRGVHLDLRSEETVRAAFDGALRESRSGDVIVETYVAGNDY
                     RCLVIGGKVAAIAERVPASVTGDGEHTVRQLVELANADPRRGIGHEKVLTRIALNEAA
                     EALVREQGFGLDDVPPTGTWVKLALTGNMSTGGTSIDRTMEAHPDNVEIAETAARIVG
                     LDVAGIDFICPDIATPVRETGGAIVEVNAAPGFRMHTHPTEGEPQYVARPVIDSLFPA
                     GSSARIPIIAVTGTNGKTTTVRMVSHILKLMGRRVGMTSTDGIVIDGRLIRKGDMSGP
                     RSAQMVLQNPTVDTAVFEVARGGILREGLGYDRNDVAVVTNVTGDHLGLGGITSLGQL
                     ANVKGVVVEAVPRSGTAVLNADDHLVYRLGRHCAGRVVLFSMATAKGEDGFDRVDGHT
                     GRGGAAFCLEPSDAGELIVLRLGSRTMPVLYTHLIPATFGGRARMNVANALAAAAAAW
                     AAGAHLHDIRQGLRTFTTSFFQAPGRLNLLDVDGVQVVIDYCHNTDGMRQLADFVGRM
                     MVDPHAKGERGGAAAGHGRRSGRAIGVIGIPGDRRDEDQREYGALAAGAFDELIVREN
                     KNLRGRKPGETAANVIDGIHQARSAGSARATRAAKVLEETAAVMTALRRAVPGDLVVC
                     CVDDAVGVYRAAMAAAGATRGATAFTDPGELEAPEG"
BASE COUNT          590 a         1505 c         1478 g          539 t
ORIGIN      
        1 ggacaggatc agggcgaagg tgaggctcag caggatgatc gcggcgatcc ggtgcgggtc
       61 gcgcgcccgc gtcgcctcgc ggcggagcgc gcgccggaag acaccggccc gccggcgcgt
      121 cccacgatcg accacgtcgg acaggtcgac cgcgatgcgc ccgaggcctc gtgcgctgcc
      181 cgggacggga cgcaattccg gttcggggag gtcgtccatc gcgggcgcat tctcccacgc
      241 cgaccgagcg tgccggccga tccacggggt gacggccaag cggcacgacc gcccggcgcc
      301 cggccacgct ccgcgtctcc gccgcccggc cggcgagcgt cggctatcct ctgccgagcc
      361 gcaaggagct cgacgtctgt tggccgacgg aaccgtgatc atcatcggcg gggctgagga
      421 caaggtccgc gaccgcgtca tcctgaaccg cttcgtggcg ctcgcgggcg ggcccgacgc
      481 gacgatcgcg gtgatcagca cggcgtcgtc gctcgggatg gaggccggtg aacggtaccg
      541 cgcggtcttc gccgagctcg gcgtcaagcg ggtccgcccg ctccacacgg tcacccggcc
      601 gcaggccaac gacgacacgg cgacgagggc cgtccacgac gcgaccggca tcttcctgac
      661 cggaggcaac cagctccggc tgtcctccac gatcggcggc acgcgtctcg ccgacgcgat
      721 cctggagcga ttccagcacg gggccgtggt cgcgggcacg tccgccgggg cgtcggcgat
      781 gtccagccac atgatcgcgt tcggggcgtc cggggcgacg cccaagcacc ggatggccca
      841 gatcgccgcc ggcctcggcc tcctcccggg cgtgatcgtc gaccagcatt tccagcaacg
      901 caaccggctg ggccggctgc tcagcctgat cgcccagaac ccgagcctgc tcgggctcgg
      961 cgtcgatgag gacaccgcgg gcgtcgtggg ccccgaccac gtgatggagg tgatcgggcg
     1021 cgggtcgatc acggtcgtcg acggcgccac ctccgagacc gacgcctggg agatccacgg
     1081 ccatcggccg ctgatgatca gcggcgtcgt cctccattcg ctgcccgccg gctatcgctt
     1141 cgacctgcgc agccgcgagc gggtggcgtc gcccgtgctc cacgcgctcc cgggcgccga
     1201 ggcggcctcc agctagtcag ccaggcggcg gacaggccgc ccaacgagga gagtccccgt
     1261 gacccaggcc gtgcccgcgt cccgctcccg tcgccaaccc cgacgtgcgg ccgcgtccgt
     1321 cccgtctgga ccggccccca cgctgcggat cctcgagacg cgcgtcctgc gcgggccgaa
     1381 ctactgggcc cgggaaccgg tcgtccggct cctcgtcgac ctcggcgtcc tcgagcagta
     1441 ccccacgaac aagctgccgg gcttcacgga cgcgctcgtc gcgctgctcc cgacgctcga
     1501 ggaccacgcc tgctcgctcg gccggcgggg cggcttcatc acgcggttgc gcgacgggac
     1561 gtgggtcggc cacgtcgccg agcacgtcgc gctcgagttc cagaacctgg ccgggaccga
     1621 cgtccggcac ggcaagacgc gcggcgccgg gccggtcggc cagtacaact gcatctacga
     1681 gtaccgcgag gagcaggtcg ggctcgaagc cggccggatg gccgtgcgcc tggtcaacca
     1741 cctcgtggcg cccgacgacc ccgaggtctt cttcgacttc gcgcccgagc tcgagcacct
     1801 catccggctc gccgagcggc aggcgttcgg cccgtcgacc caggccctga tcgacgaggc
     1861 cgtgagccgg gacatcccgt tcattcggct cgaccgtcac tcgctggtcc aattcggcca
     1921 cggcgtccac cagcaacgga tccgggcgac gatgacctcg cggacctccg cgatcgccgt
     1981 ggacatcgcg tcggacaaga gcctgaccaa ccagctgctc gattcggccg ggctgccggt
     2041 gtcgcacgcg caggtcgtcg acagcgccga cgccgccgcc gccgcggcga cccgcgtcgg
     2101 cttcccgtgc gtggtcaagc cgctcgacgg caaccacggc cgcggcgtcc acctcgatct
     2161 ccggtccgag gaaaccgtcc gggccgcgtt cgacggcgcg ctccgcgaga gccgctcagg
     2221 cgacgtgatc gtggagacgt acgtcgcggg caacgactac cgctgcctgg tgatcggcgg
     2281 caaggtggcg gcgatcgccg agcgggtgcc ggcgtcggtg accggcgacg gggagcacac
     2341 cgtccggcag ctggtcgagc tggccaatgc cgatccgcgg cgcggtatcg gccacgagaa
     2401 ggtgctcacc cggatcgcgc tcaacgaggc cgccgaggct ctcgtccgcg agcagggctt
     2461 cggcctcgac gacgtgccgc ccaccgggac ctgggtcaag ctcgccctga ccggcaacat
     2521 gtcgaccggc gggacctcga tcgaccggac gatggaggcc catccggaca acgtcgagat
     2581 cgccgagacc gccgcccgga tcgtcgggct cgacgtggcc ggcatcgact tcatctgccc
     2641 ggacatcgcg acacccgtgc gcgagaccgg cggggcgatc gtcgaggtga acgcggcacc
     2701 cgggttccgg atgcacacgc atccgaccga gggggagccg cagtacgtcg cccggccggt
     2761 catcgattcg ctcttcccgg ccggatcgtc ggcgcggatc ccgatcatcg ccgtgaccgg
     2821 cacgaacggg aagacgacca ccgtccggat ggtgtcgcac atcctcaagc tgatgggccg
     2881 gcgggtcggg atgacctcga cggacgggat cgtgatcgac ggccggctga tccggaaggg
     2941 cgacatgtcg gggccgcggt cggcccagat ggtcctccag aacccgaccg tcgacacggc
     3001 ggtgttcgag gtggcccgtg gcggaatcct gcgcgagggg ctcggctacg accgcaacga
     3061 cgtggcggtc gtgaccaacg tgaccggcga ccacctgggg ctgggcggca tcacctcgct
     3121 cggccagctg gccaacgtca agggcgtggt cgtcgaggcc gtgccgcgct cggggaccgc
     3181 ggtcctcaac gccgacgacc acctcgtcta ccggctcggc cggcactgcg cgggccgggt
     3241 ggtgctgttc agcatggcca ccgccaaggg cgaggacggg ttcgaccggg tggacggcca
     3301 cacgggtcgc ggcggtgcgg cgttctgcct cgagcccagc gacgcgggcg agctgatcgt
     3361 gctgcggctc gggtcgcgca cgatgccggt cctgtacacc catctgatcc cggcgacctt
     3421 cggtggccgg gcccggatga atgtcgccaa cgcgctggcc gccgccgccg cggcctgggc
     3481 ggccggcgcc cacctgcacg acatccgcca gggcctgcgg acgttcacga cgtcgttctt
     3541 ccaggcgccg ggccggctca acctgctcga cgtcgatggc gtccaggtcg tcatcgacta
     3601 ctgccacaac accgatggca tgcgccagct ggccgatttc gtcggccgga tgatggtcga
     3661 cccgcatgcc aaaggcgagc gtggcggcgc cgcggctggc cacggccgac gatcgggtcg
     3721 ggcgatcggg gtgatcggca tccccggcga ccggcgcgac gaggaccagc gtgagtacgg
     3781 cgccctggcg gccggcgcat tcgacgagct gatcgtccgc gagaacaaga acctccgcgg
     3841 ccggaagccg ggcgagaccg ccgccaacgt gatcgacggg atccaccagg cgcgttctgc
     3901 gggatccgcg cgagcgaccc gcgcggcgaa ggttctcgag gaaacggcgg cggtcatgac
     3961 tgcgcttcga cgagcggtcc cgggcgacct ggtggtctgc tgcgtcgacg acgcggtcgg
     4021 tgtctaccgg gcggccatgg ccgcggccgg cgcgacgcgc ggcgcgaccg cgttcaccga
     4081 cccaggggag ctcgaggcgc ccgagggctg ag
//
LOCUS       DATDDI010000087         1523 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_605157, whole genome shotgun sequence.
ACCESSION   DATDDI010000087 DATDDI010000000
VERSION     DATDDI010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605157"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VIU37_01295"
     CDS             complement(<1..570)
                     /locus_tag="VIU37_01295"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEY6012602.1"
                     /translation="MRWRIALLVIALLAVTAIPASTATTTASDPGHRLMASINQAREA
                     RGLVPLRSDPRLWSLADERAGRLAASGVLSHAAAGPLAQDLDARGVRWFGYGEVIGYA
                     SGPAGIAQRTVLQLWAASSDHWPLLMSARYNYLGVGLAYRSDSGVTYVSVVLTESPDR
                     TGARAAVTGALVSGNDIRWSWSGADVPLQT"
     gene            complement(567..>1523)
                     /locus_tag="VIU37_01300"
     CDS             complement(567..>1523)
                     /locus_tag="VIU37_01300"
                     /inference="COORDINATES: protein motif:HMM:NF024676.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEY6012603.1"
                     /translation="MTRLVSILQAHPDGVRTADVAERVGMSVRTVYRDLRAIDEEIGV
                     PVWADGGRWGIDQEKAFLPPLKLTQSEAMAVVLSARLMVRYADKYDPDLASAFEKLEQ
                     GLPPALAEHVERTLDILSKAPRDDRFIANVRLLTKAWAERRVVTFEYEPAPYERGSAP
                     RRATVRPYLLEPSLQTHALYLMGFDEERGAFRTFKIERIRTASLTPRTFEPPDPAATT
                     SALRPAWDIIADQAPVEVVLRFAARVASRVLEATWHATQTVATEPDGSLRWSATVSGT
                     IEIRLWILSWGDDVEVVSPPELRDDVAATLRRAAGRYEGARS"
BASE COUNT          214 a          542 c          558 g          209 t
ORIGIN      
        1 cgtctgcagc ggcacgtctg cgccgctcca cgaccagcga atgtcgttgc ccgagaccag
       61 cgctccggtg acggcggccc gagcccccgt ccgatccggc gattcggtca ggacgacgga
      121 cacgtacgtg actccggagt cggatcgata ggcgaggccg acgccgaggt agttgtaccg
      181 ggcgctcatc agcagcggcc agtggtcgga gctcgcggcc cagagctgga ggaccgtgcg
      241 ctgggcgatc ccggcgggcc cggacgcata gccgatgacc tcgccatagc cgaaccagcg
      301 cacgccccgg gcgtcgagat cctgggccag cgggccggcg gcggcgtggc tcagcacgcc
      361 gctggccgcg aggcgtccgg cccgttcgtc agccagcgac cacagccgcg ggtcggaacg
      421 caggggcacg agcccgcggg cctccctggc ctggttgatc gaggccatca gccggtgtcc
      481 cgggtcgctg gcggtcgtcg tggcggtgct cgccgggatc gcggtcaccg ccagcagcgc
      541 gatgacgagc agggcgatcc gccacctcac gatcgagcgc cctcgtaccg gccggccgcg
      601 cgtcgcagtg tcgcggcgac gtcgtcgcgg agctcgggcg gcgacacgac ctccacgtcg
      661 tcgccccacg acaggatcca caagcggatc tcgatggtcc cggagaccgt cgcgctccag
      721 cgcagcgatc cgtccggctc cgtcgccacc gtctgggtcg cgtgccaggt cgcctcgagg
      781 acccggctgg cgacgcgcgc ggcgaagcgg agcacgacct ccaccggcgc ctggtcggcg
      841 atgatgtccc aggccgggcg cagggcgctg gtggtcgccg ccgggtcggg cggctcgaac
      901 gtccgggggg tcagcgacgc cgtgcggatc cgctcgatct tgaacgtccg gaaggccccg
      961 cgctcctcgt cgaagcccat caggtagagc gcgtgcgtct ggagcgacgg ctcgagcagg
     1021 tagggccgga cggtcgcgcg acgcggtgcc gagcctcgct cgtagggtgc cggctcgtac
     1081 tcgaaggtca ccacacggcg ctctgcccag gccttggtca gcagccggac gttcgcgatg
     1141 aaccggtcgt cgcgcggcgc cttggacagg atgtcgagcg tccgctcgac gtgctccgcg
     1201 agggcgggcg gcaggccctg ttcgagcttc tcgaaggcgg acgccaggtc cgggtcgtac
     1261 ttgtccgcat agcggaccat cagccgggcg gacaggacca ccgccatggc ctcgctctgc
     1321 gtgagcttga gcggcggcag gaacgccttc tcctggtcga tgccccagcg gcccccgtcc
     1381 gcccagaccg ggacgccgat ctcctcgtcg atggcacgga ggtcgcggta cacggttcgc
     1441 accgacatgc ccacgcgctc ggcaacatca gctgtacgga cgccgtcggg gtgcgcctgc
     1501 aggatggata cgaggcgtgt cat
//
LOCUS       DATDDI010000088         2016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_501204, whole genome shotgun sequence.
ACCESSION   DATDDI010000088 DATDDI010000000
VERSION     DATDDI010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501204"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VIU37_01305"
     CDS             complement(<1..686)
                     /locus_tag="VIU37_01305"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6012604.1"
                     /translation="MTASSPTDQPAPQLAPEAFAERAQAIEREVGRVIVGQAALVRQT
                     LTGLLANSHVLLEGVPGLGKTMLVRTIADVIDCAFNRIQFTPDLMPADITGTNILVEE
                     DGRRIFRFQPGPVFANLVLADEINRATPKTQSSLLEAMQEHQVTVARQRYPLDPPFFV
                     LATQNPLEMEGTYPLPEAQLDRFFFKLKVEFPDRAELHTILDRTTSDEEPHPQPVVDK
                     RRILEMKHLVR"
     gene            complement(698..>2016)
                     /locus_tag="VIU37_01310"
     CDS             complement(698..>2016)
                     /locus_tag="VIU37_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012605.1"
                     /translation="PRLSRRPAVATLVAALLLAPVLLVPNPQDAVIAQQQQIREAAER
                     QAERIDQVAQDLEAKGQDASDPRTKLAQELRDLALRLREHPDQLDANLARLGAVEDEV
                     RAQTDPANEQRASSLTSLSRSLSQAATGKPDANRDGDPKTTSADLQQLADNLDDLTAE
                     QRRDLAPQLAGLEATASQADGASGTALRDAAQSLAQGDTAGAKSALGRLGQSLTGAQQ
                     RISTGRDLAGAASRLQDARRDLADAGQATPGQGQGQAQGQGQQSPAPSGSGQGQGQGQ
                     GQGQGQGQGQGQGQGQGQGQGQGQGQGQGQGQGQGQGQGAIGGGGSNARSLGNGTGGN
                     GRPAGPTNPNRPSQLGADLSSIYAPFDRLGKPGDPSYVAGTGGDGQTQQGNQTGTGSN
                     NGALTPYQQVYADFLRYAQTSLDRGYIPLSIKDYVKNYFSSLDPSH"
BASE COUNT          226 a          681 c          750 g          359 t
ORIGIN      
        1 cggaccaggt gcttcatctc gaggatgcgc cgcttgtcca ccaccggctg cgggtgcggc
       61 tcctcgtcgc tggtcgtgcg gtcgaggatg gtgtgcagct cggctcggtc cgggaactcg
      121 accttgagct tgaagaagaa gcggtcgagc tgcgcttccg gaagcggata agttccctcc
      181 atctcgagcg ggttctgggt cgccagcacg aagaacggcg ggtccagcgg gtagcgctgg
      241 cgggcgaccg tgacctggtg ctcctgcatc gcctcgagga ggctcgactg ggtcttcggc
      301 gtggccctgt tgatctcgtc ggccagcacg aggttggcga agacgggccc gggctggaag
      361 cgaaagatcc gccggccgtc ctcctcgacg aggatgttcg tgccggtgat gtcggccggc
      421 atgaggtcgg gcgtgaactg gatccggttg aacgcgcagt cgatcacgtc ggcgatcgtc
      481 cggacgagca tcgtcttgcc cagcccgggt acgccctcga gcaggacgtg gctgttggcg
      541 agcaggccgg tgagggtctg ccggacgagc gccgcctgtc cgacgatgac gcgtccgacc
      601 tctcgttcga tggcctgggc gcgctcggcg aaggcttcgg gcgccagctg cggcgcgggc
      661 tggtctgtcg ggctcgacgc ggtcatggtg cctccggtca gtgcgacgga tcgagtgagc
      721 tgaagtagtt cttcacgtag tccttgatcg agagcgggat gtagccgcgg tcgagtgagg
      781 tctgggcgta gcggaggaag tcggcgtaca cctgctggta cggggtcagc gcgccgttgt
      841 tcgagcccgt gcccgtctgg ttgccctgct gcgtctggcc gtcgccgccg gtcccggcca
      901 cgtaggacgg atcacctggc ttgccgagcc ggtcgaacgg cgcgtagatc gaggacaggt
      961 ccgcaccgag ctgcgacggt cggttggggt tggtcggccc ggccggacgg ccgttgccgc
     1021 cggtgccgtt gccgagcgac ctggcattgg agccgccacc gccgatcgca ccctggcctt
     1081 gcccctgtcc ctgcccctgg ccttgacctt gcccctggcc ttgaccttgc ccctggcctt
     1141 gaccctggcc ttggccctga ccctgacctt ggccttgacc ctggccctgc ccctgaccct
     1201 gaccctgacc gctcccgctc ggagccgggc tctgctgccc ctgcccctga gcctgccctt
     1261 gcccctggcc gggtgtcgcc tgtcccgcat cggccaggtc gcggcgtgcg tcctggagcc
     1321 gggaggcagc gccggcgaga tcgcgccccg tcgagatccg ctgttgcgcg ccggtcagcg
     1381 actggccgag ccggccgagc gccgatttgg ccccggccgt gtcgccctgg gccaggctct
     1441 gggcggcgtc ccgcagggcg gtcccggaag cgccgtcggc ctgggacgcg gtcgcttcga
     1501 gcccggccag ctgcggggca aggtcgcggc gctgctcggc cgtgaggtcg tcgaggttgt
     1561 cggcgagctg ctgcaggtcg gcgctggtgg tcttcgggtc gccgtcccga ttggcgtcgg
     1621 gctttcccgt cgcggcctgc gacagcgagc ggctgagcga cgtcaacgac gaagcgcgtt
     1681 gctcgttggc cggatcggtc tgcgcgcgta cctcgtcctc gacggcgccg aggcgcgcga
     1741 ggttggcgtc cagctggtcg ggatgctcgc gcaatcgaag cgccaggtcg cgcagctcct
     1801 gggcgagctt cgttcgcggg tcgctggcgt cctgcccctt ggcctccagg tcctgcgcca
     1861 cctggtcgat gcgctccgcc tggcgctccg cggcctcgcg aatctgttgc tgctgggcga
     1921 tcacggcgtc ctgcgggttc gggaccagga ggacgggcgc gagcaacagc gctgcgacca
     1981 gcgtggccac cgcgggtcgc cgcgacaggc gcggtg
//
LOCUS       DATDDI010000089         2116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_376418, whole genome shotgun sequence.
ACCESSION   DATDDI010000089 DATDDI010000000
VERSION     DATDDI010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376418"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VIU37_01315"
     CDS             <1..364
                     /locus_tag="VIU37_01315"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEY6012606.1"
                     /translation="GALLRTIVVRRGDDDYLFVLVPAGRRFDWPKLRGHLGVTRLSLP
                     DADEAQRVTGYVRYTITPFGSTRAWPVVADAAIVDQPVVAIGGGARGVNLHLAPADLI
                     AALDAAVVDVTVPEGPAS"
     gene            complement(378..1253)
                     /locus_tag="VIU37_01320"
     CDS             complement(378..1253)
                     /locus_tag="VIU37_01320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012607.1"
                     /translation="MPRFPARLVIPALAATFLAACGGAGSSPAPSAEPSPPGDAKALL
                     RVTMVQALPPMNTFGLIPAIVVTLDGRVLSGGAVPAIFPGPLVMPIIERKLTPAGWAQ
                     IVAAARAAGLLSGQRDFTGGAMPPGSVTARLELVADGRLYDLIGDPNKFIVCVKAPCI
                     PAPGTPEAFGTFINNLTMLDSWLAADLGPQGSFAPPAYALIVGPPPNQQGLEQPILPW
                     PLADGLAALGKPLSDGSGSRCGLVTGDAAAALRPAFGAANQLTRWRDPADGSLRGLTV
                     RPLLPGDADPCAGLV"
     gene            complement(1343..1978)
                     /locus_tag="VIU37_01325"
     CDS             complement(1343..1978)
                     /locus_tag="VIU37_01325"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEY6012608.1"
                     /translation="MASLICPVCGTENPSNRQFCRKCASDLRAPIANPNAPVAPPPTP
                     VPVRPIVIGGGIALVAVVLILGLLVALGGSPAPSPAPSVTLAPATGSPAPLATASAQP
                     SAAPTVAPTAATEPTEQPAPLIRSFEGPVSVDCNDPAFNGFIHLSWRVGFADGATLSI
                     DGPGVYKSYPGVLGQDDVPFGCGGEPHTYTLTTVGGNGPAATKTLQISQPG"
BASE COUNT          275 a          734 c          833 g          274 t
ORIGIN      
        1 cggcgcgctg ctgcggacga tcgtcgtccg gcgcggcgat gacgactacc tgttcgtgct
       61 cgtgccggcc ggccggcgct tcgactggcc caagctccgg ggccacctcg gcgtgacgcg
      121 cctgtcgttg ccggacgcgg acgaggcaca gcgcgtcacc ggctacgtcc gctacacgat
      181 cacgccgttc ggatcgacgc gggcgtggcc cgtcgtcgcg gacgcggcga tcgtcgacca
      241 gccggtcgtc gccatcggcg gcggcgccag gggcgtcaac ctgcacctcg ccccggccga
      301 tctcattgcc gccctcgacg cggccgtcgt cgacgtgacg gtgcccgagg gccccgcgag
      361 ctgaccctgg cccggagcta gacgagccct gcgcatggat cggcgtcgcc cggcaggagc
      421 ggcctgacgg tgaggccgcg gagggagccg tcggcagggt cgcgccagcg cgtcagctgg
      481 ttggcggcgc cgaaggccgg ccgaagcgcg gccgccgcgt cgccggtcac gaggccgcaa
      541 cggctcccgc tgccgtcgga cagcggcttc ccgagcgcgg ccagcccgtc ggccagcggc
      601 cacggcagga tcggctgctc gaggccctgc tggttcggcg gcggccccac gatgagggcg
      661 tacgccggag gcgcgaagct gccctgcggc cccaggtccg cggccagcca cgaatcgagc
      721 atcgtcaggt tgttgatgaa cgtcccgaac gcctcgggcg tgcccggcgc cgggatgcac
      781 ggcgccttca cgcagacgat gaacttgttc gggtcaccga tgaggtcgta caggcggccg
      841 tccgcgacga gctccagtcg agccgtcacc gagcccggcg gcatcgcacc gccggtgaag
      901 tcgcgctgcc cggacaggag gccggcggcg cgtgccgcgg ccacgatctg cgcccagccg
      961 gcgggcgtca gcttccgctc gatgatcggc atcacgagcg ggcccgggaa gatggcgggc
     1021 accgcgccgc cggagaggac ccggccgtcg agggtgacca cgatcgccgg gatcaggccg
     1081 aacgtgttca tcggcggcag tgcctggacc atcgtcacgc gcagcagggc cttcgcgtcg
     1141 ccgggtggcg atggctcggc cgacggcgct ggcgacgaac cggcgccgcc gcacgcggcg
     1201 aggaaggtcg cggcgagggc ggggatcacg aggcgagcgg ggaagcgcgg cattcgggct
     1261 gctcctggtt gggcgggaga ggcgtcgcgc tgacgcgcgc ccggccggac cggttccccg
     1321 tccgtgacgg cggcctgacg ggtcagccgg gctggctgat ctgcagggtc ttcgtcgctg
     1381 ccggcccgtt gccgccgacg gtcgtcagcg tgtacgtgtg cggctccccg ccgcagccga
     1441 acggcacgtc gtcctggccg aggacgccgg ggtagctctt gtacacgccc gggccgtcga
     1501 tcgacagggt ggccccgtcg gcgaagccca cgcgccacga gaggtggatg aagccgttga
     1561 aggccgggtc gttgcagtcg acggagaccg gaccctcgaa cgatcggatg aggggcgccg
     1621 gctgctcggt gggctcggtg gcggcggtcg gcgccactgt cggcgctgcg ctcggctgcg
     1681 ccgatgccgt cgcgaggggt gccggcgatc cggtcgcagg cgcgagggtc acgctgggcg
     1741 ccggcgaggg cgccggcgag ccgccgagcg cgacgagcag gccgaggatg agcacgacgg
     1801 cgacgagcgc gatcccgccg ccgatcacga tcgggcgaac tgggaccggg gtcggcggcg
     1861 gcgcgacggg agcgttcggg ttggcgattg gcgcgcgcag gtccgacgcg cacttcctgc
     1921 agaactggcg gttcgacgga ttctccgtgc cgcagaccgg gcagatcagg ctggccatcc
     1981 ggtatcgatc tcccagggcg gggaacggcg gcggctagag cgccttgacc gcggcgatga
     2041 ggtccgccag gccctgcttc gcgtcggcga agagcatgcc cgtcttgggg ttcacgtaga
     2101 gctcgttgtc gatgcc
//
LOCUS       DATDDI010000090         1849 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_459645, whole genome shotgun sequence.
ACCESSION   DATDDI010000090 DATDDI010000000
VERSION     DATDDI010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459645"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VIU37_01330"
     CDS             complement(<1..512)
                     /locus_tag="VIU37_01330"
                     /inference="COORDINATES: protein motif:HMM:NF014749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012609.1"
                     /translation="MRSFLGRDILSLKDFSRDEFFRVFQVADDLRPFARDRRNTDLLK
                     NKTLLTAFYQPSTRTRLSHEAAMHRLGGHVLGFSDSKMTRAGDFYQESIKDTFHMLEY
                     YADVIAIRHFQQGAPAEAAKWSSVPIINCGDGWGEHPTQVLTDLYTTLHEKGTLDGLT
                     WLLVGDMRMRT"
     gene            complement(509..>1849)
                     /locus_tag="VIU37_01335"
     CDS             complement(509..>1849)
                     /locus_tag="VIU37_01335"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEY6012610.1"
                     /translation="TTWFACAGCGARPADGRPVPLVCPNAATGDGIDHVLVRHLDPAA
                     APIPVTDDPNPFVAYRRLFHAWYAARAAGLDDDGYVARVRALDDAVAAVDGHGFRVTP
                     FARSATLSTALGLSAGGVWVKDETGNVSGSHKARHLFGTLLELEVAGTRPEVPLAIAS
                     CGNAALAAAVVARAADRQLLVFIPTDADIAVVSRLRSLGAQLTVCERTPGVAGDPTYL
                     ELLDAIDEGALPFTCQGNLNAFAVEGGETLGLELAAAVGRRDGPPRIDRVVVQVGGGA
                     LASSVIAGFANARVAGIALDQPRFDTVQTRGAFPLARAHEGVAARVAAGESIEAALAF
                     AAHHRAEFMWPWEEAPHSVAHGILDDETYDWQAVVAGMLRTGGTPLVVDEATLEAAND
                     LARTATGIDVDHTGSAGLAGLLQLSRDGALDPDEHVVICFSGITRHPEQEDTRS"
BASE COUNT          261 a          624 c          697 g          267 t
ORIGIN      
        1 gtccgcatcc gcatgtcgcc gactaggagc caggtcagcc cgtcgagcgt gcccttctca
       61 tggagcgtcg tgtacaggtc ggtgaggacc tgggtcgggt gctcgcccca gccgtcgccg
      121 cagttgatga tcggcacgga cgaccacttg gccgcctccg cgggcgcgcc ctgctggaag
      181 tggcggatgg cgatgacgtc cgcgtagtac tccagcatgt ggaaggtgtc cttgatcgac
      241 tcctggtaga agtcgccggc gcgggtcatc ttcgagtcgg agaagccgag gacgtggccg
      301 ccgaggcgat gcatcgcggc ctcgtgcgac aaccgggtcc gggtgctggg ctggtagaac
      361 gccgtcagca gcgtcttgtt cttgagcagg tcggtgttgc ggcggtcccg cgcgaagggg
      421 cgcaggtcgt cggcgacctg gaagacccgg aagaattcgt cccggctgaa gtccttgagg
      481 gacaggatgt cgcgaccgag gaagctcctc atgacctggt gtcctcctgt tcggggtgcc
      541 gggtgatccc ggaaaagcag atgacgacgt gctcgtctgg gtcgagcgcg ccgtcgcgcg
      601 agagctggag caggccggcg agcccggccg aaccggtgtg atcgacgtcg atcccggtcg
      661 cggtccgggc gaggtcgttg gcggcctcga gcgtcgcctc gtcgacgaca aggggcgtgc
      721 cgccggtccg gagcatcccg gccacgaccg cctgccagtc gtacgtctcg tcgtcgagga
      781 tgccgtgggc gacgctgtgc ggcgcttcct cccacggcca catgaactcg gcgcggtggt
      841 gggccgcgaa tgcgagcgcc gcctcgatcg actcgccggc cgccacgcgc gcggccacgc
      901 cctcatgcgc ccgcgccagc gggaacgcgc cgcgtgtctg gaccgtgtcg aagcgcggct
      961 ggtcgagcgc gattccggcg actcgggcat tggcgaaccc ggcgatcacc gacgaggcga
     1021 gtgccccgcc accgacctgg accacgacgc ggtcgatccg cggcggtccg tcgcgccggc
     1081 cgacggcggc ggccagctcc aggccgagcg tctcgccgcc ttcgaccgcg aaggcgttca
     1141 gattcccctg gcaggtgaac ggcagggcgc cctcgtcgat cgcgtcgagc aactcgaggt
     1201 aggtcggatc gcccgcgacc ccgggtgtcc gttcgcagac ggtcagctgg gcgccgagcg
     1261 agcgaagccg agataccacc gcgatgtcgg cgtcggtcgg gatgaacacg agcagctggc
     1321 gatcggccgc gcgtgccacg accgcggccg ccagcgccgc gttcccgcag ctggcgatcg
     1381 cgagcggcac ctcgggtcgg gtgcccgcga cctcgagctc gagcaatgtc ccgaacaggt
     1441 gtcgggcctt gtgggagccg gacacgttgc cggtctcgtc cttgacccag acgccgccgg
     1501 ccgacagtcc gagcgccgtc gagagcgtcg cgctccgggc gaacggcgtg acccggaacc
     1561 cgtggccgtc caccgcggcg accgcgtcgt cgagtgcccg aacgcgggcg acgtagccat
     1621 cgtcgtccag gccggccgcc cgcgcggcgt accaggcatg gaacagtcga cggtaggcga
     1681 cgaacgggtt ggggtcgtcg gtcaccggga tcggggcggc cgcagggtcg aggtggcgga
     1741 ccaggacgtg gtcgattccg tcgccggtgg cggcgttggg gcagaccagc gggaccggcc
     1801 tgccgtcggc cggtcgtgcg ccacagccgg cgcaggcgaa ccaggtcgt
//
LOCUS       DATDDI010000091         1850 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_334878, whole genome shotgun sequence.
ACCESSION   DATDDI010000091 DATDDI010000000
VERSION     DATDDI010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334878"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..238)
                     /locus_tag="VIU37_01340"
     CDS             complement(<1..238)
                     /locus_tag="VIU37_01340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012611.1"
                     /translation="MRRTKTSSKGVEQRRRAVTYSLDGSARRFRSTLLLDAVLLSCLA
                     CAAPTNRLEVAGTVEIRDIGIAPLAAGRVVRLLKD"
     gene            complement(239..1336)
                     /locus_tag="VIU37_01345"
     CDS             complement(239..1336)
                     /locus_tag="VIU37_01345"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEY6012612.1"
                     /translation="MRDNQQRLENIRRERTQAQQDLERLRAQVHSLADELTNLEHQKE
                     TTNRIVNELDRQVLQLGDAIDRITVDLVLAQDALDEKRAVAERRLVDIYKRGPLYAYQ
                     VLFAAESFGDLLSRYKYLYLISRQDRQLANEMNRLRDRIARERRGLVEARDALERRRT
                     ERSEELQHFVDLASQRQRRLRETRRDVERVQERLTATDAEERRVANAIAGLERARREA
                     EARGAVPTTGAITSGSLGSLDWPVTGRVVYDFGPAAGPDNTRITWHGIGIAVDEGTAV
                     KAVAPGTVALVGPLGTYLTTVIVDHGGGFYTIYASLNDAAVSKGDRVVRGQLLGHVGG
                     GTTEQGPHLHFEIRGPGQIALDPLNWLKPKP"
     gene            complement(1480..>1850)
                     /locus_tag="VIU37_01350"
     CDS             complement(1480..>1850)
                     /locus_tag="VIU37_01350"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY6012613.1"
                     /translation="RGLAAAVGVVVGAAFAIVAVIIIGTTIRMAVLQRSREIAIMRLV
                     GATDGFIRRPFLLQGALKGLLGGLVAVGLSYAAYVLINRFLIASSFFTALQALAVVVF
                     GTVIGLMGSLLSVGRHLRRV"
BASE COUNT          280 a          638 c          643 g          289 t
ORIGIN      
        1 cgtccttcaa caggcggacg acccggccgg cggcgagggg ggcgatgccg atgtcgcgga
       61 tttcgacggt gccggccact tccaggcggt tcgtcggggc ggcacaggcg aggcacgaca
      121 acagaacggc gtcgagcaga agcgtcgagc gaaatcgtcg agcagaaccg tcgagcgaat
      181 acgttaccgc tcgacgccgc tgctcgacgc ctttgctcga cgtcttcgtt cgacgcattt
      241 agggtttcgg tttcagccag ttgaggggat cgagcgcgat ctgccccggg ccccggatct
      301 cgaagtgcag gtgcgggccc tgctcggtcg tgccgccgcc gacgtggccg agcagctgtc
      361 cccggaccac gcggtcgccc ttggaaaccg ccgcgtcgtt gagcgaggcg tagatcgtgt
      421 agaagccgcc gccgtgatcc acgatcaccg tcgtgaggta ggtgccgagg gggccgacca
      481 gggcgaccgt cccgggcgcg actgccttca cggccgtgcc ctcgtccacg gcgatgccga
      541 tgccatgcca ggtgatgcgc gtgttgtcgg gtcccgcggc cgggccgaag tcgtagacca
      601 cgcggccggt cacgggccaa tcgagcgagc ccaggctccc gctcgtgatc gcgccggtcg
      661 tcggcacggc gccccgggcc tcggcctcgc ggcgcgcccg ctcgagcccg gcaatggcgt
      721 tggcgacgcg ccgctcctcg gcgtcggtgg cggtgagccg ctcctggacc cgctccacgt
      781 cgcggcgcgt ctcgcgcagc cggcgttgcc gctgcgaggc gagatcgacg aaatgctgca
      841 gctcctcgga ccgctcggtg cgccgccgct ccagggcgtc gcgggcctcc accagaccgc
      901 gtcgctcccg tgcgatgcga tcccgcagcc ggttcatctc gttggcgagc tggcggtcct
      961 gccggctgat caggtagagg tacttgtatc gcgacagcag gtcgccgaaa ctctcggccg
     1021 cgaacagcac ctggtaggcg tacagcgggc cgcgcttgta gatgtcgacg agccgccgct
     1081 ccgccacggc gcgcttctcg tccagcgcgt cctgggccag caccagatcc accgtgatgc
     1141 ggtcgatcgc gtcgcccagc tggaggacct gccggtccag ctcgttcacg atgcggttcg
     1201 tggtctcttt ttgatgctcg aggttggtca gctcgtcggc gaggctgtgg acctgggcgc
     1261 gcagccgctc cagatcctgc tgcgcttggg tccgctcacg gcggatgttc tccaggcgct
     1321 gctgattgtc gcgcatctgc tgctcgaggg tggggcgttg ggccagcagc ggcccggaca
     1381 atgcgactac gtccagcaga accgtcaggc aaaggcgtcg agcaaagccg tatccacgcc
     1441 tccgcttgac gccgttgcta gacgccctcg cttgacgtct catactcttc tcaaatgtcg
     1501 cccgacgctg aggagactcc ccatcagccc gatgaccgtc ccgaacacca cgacggccag
     1561 cgcctgcagc gccgtgaaga aggaagaagc gatcaggaac cggttgatga gcacgtaggc
     1621 ggcgtaggac aagccgacgg cgacgagccc gccgagcagg cccttgaggg cgccctggag
     1681 caggaacggg cggcggatga acccgtcggt cgcgcccacg agccgcatga tcgcgatctc
     1741 ccggctgcgc tgcagcacgg ccatccggat cgtggtgccg atgatgatca cggcgacgat
     1801 ggcgaacgcc gcgccgacca ccacgccgac cgcggcggcg agcccgcgga
//
LOCUS       DATDDI010000092         2888 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_43410, whole genome shotgun sequence.
ACCESSION   DATDDI010000092 DATDDI010000000
VERSION     DATDDI010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2888
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43410"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1140)
                     /locus_tag="VIU37_01355"
     CDS             complement(<1..1140)
                     /locus_tag="VIU37_01355"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6012614.1"
                     /translation="MTARPGIDAPVIASVDVCVVGAGSAGSSAAISAARAGASVLLVD
                     RLPFLGGTSTAVLDTFYGFYTPGTVARKVVGGIGDEVVASLRTLGPVLERPNTYGAGT
                     GVTYLAEHLKVAWETLVTASGARVLLHALLQDVDVRDGRVTGVVLATRAGLARVTASV
                     FVDASGDADLSAFGGFGYETAGELDPAQTLTTTFRMANVDVARRRAVSRAAFHELMAE
                     AAESGAYDLPRREGSDHVTPVDGMIATVMTRLESYRRGPDGRIVNATDPWFLTEAEIA
                     GRRQALEYVRFLVDRVPGYERASLVALATQIGVRETRRVYGDARLTGEDVLAARRFDD
                     AIGLCGAPIEDHHAGADTTWQYLPDGEAVGIPYGTLVVRDAANVLV"
     gene            complement(1137..1943)
                     /locus_tag="VIU37_01360"
     CDS             complement(1137..1943)
                     /locus_tag="VIU37_01360"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6012615.1"
                     /translation="MCLVTGATGMAAASARRLAAEGAPVFIVSLVADEARALADELTA
                     RGDVAGWAAADLTVEADVERAMAEAVARFGRIDGAFAVAGGSGRRFGDGPIHELTAEG
                     WERTLAINLRTQALTCRAVVRQMLGQDPNSSGTRGSILLMGSVTATDPVPEFFATHAY
                     AAAKGATNALMTTMAATYAGDRIRVNAVAPSLTDTPMAARASGDARIRAFARRKQPLA
                     GELMDPDEVAHAAVYFLSDESRVVTGQLLKIDGGWSVVSASGDDAAMPDR"
     gene            2125..>2888
                     /locus_tag="VIU37_01365"
     CDS             2125..>2888
                     /locus_tag="VIU37_01365"
                     /inference="COORDINATES: protein motif:HMM:NF019138.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rho termination factor N-terminal
                     domain-containing protein"
                     /protein_id="HEY6012616.1"
                     /translation="MPAPGPDQRDRSRNRRPRRRPPIGGGRAPVTEYEEQLEIEAARE
                     RNDLEVADLREMSVAELRQVSRELDLDTAPTERKDDLVDQILRGQTERAGHDYASGIL
                     DIVDEGFGFMRRHGLLPSPDDVYVSSSQVRRFGLRIGDRVAGAVRAPRDAEKYWGMLR
                     VDSVNGVDTETARRRPIFADLTPVHPDVLINLETDAKNLSQRLVNLVNPIGKGQRALI
                     VSPPKAGKTMLLKHIANGISTNYPDILLMAALIGERP"
BASE COUNT          429 a         1101 c          997 g          361 t
ORIGIN      
        1 gaccaggacg ttggccgcgt cgcgcacgac cagcgtgccg tacgggatcc cgacggcctc
       61 gccgtcgggc aggtactgcc aggtcgtgtc cgcgccggcg tgatggtcct cgatcggggc
      121 cccgcacagc ccgatcgcgt catcgaagcg gcgggccgcc aggacgtcct cgccggtcag
      181 ccgcgcgtcg ccgtagacgc gccgggtctc gcgtaccccg atctgggtgg cgagggccac
      241 gagcgacgcg cgctcgtagc ccgggacccg atcgacgagg aaccggacgt actcgagcgc
      301 ctggcgccgc ccggcgatct cggcctccgt caggaaccag ggatcggtgg cgttgacgat
      361 ccggccgtcc ggaccgcgcc ggtacgactc gagccgggtc atgaccgtgg cgatcatccc
      421 gtcgaccggc gtgacgtggt cgctcccctc gcgccggggg aggtcgtagg cgcccgactc
      481 ggcggcctcg gccatcagct cgtggaaggc cgccctggaa accgcgcgac ggcgggcgac
      541 gtccacgttg gccatccgga acgtggtcgt cagcgtctgg gcggggtcga gctcgccggc
      601 cgtctcgtag ccgaacccgc cgaaagcgct caggtcggcg tcgccgctcg cgtccacgaa
      661 gaccgacgcg gtgacgcgtg ccaggcccgc ccgggtcgcc aggacgacac cggtcacccg
      721 gccgtcgcga acgtccacgt cctgcaggag ggcgtggagc aggacgcgcg ccccggaagc
      781 cgtgacgagc gtctcccagg cgactttgag gtgctccgcg aggtaggtga ccccggtccc
      841 ggcgccgtag gtgttggggc gttcgagcac cggacccagg gtgcgcaggc tggcgaccac
      901 ctcgtcgccg atcccgccga ccaccttgcg cgcgacggtc cccggcgtgt agaagccata
      961 gaacgtgtcc aggacggccg tgctcgtccc accgaggaac ggcaggcgat cgacgagcag
     1021 cacgctcgct cccgcgcgag cggccgagat cgcggccgac gacccggccg agccggcacc
     1081 gacgacgcag acgtcgaccg acgcgatcac cggcgcgtcg atgccgggtc gcgcggtcat
     1141 cggtccggca tcgcagcgtc gtcgccggag gcggagacca cggaccaccc gccgtcgatc
     1201 ttgagcagct ggccggtcac gacgcgcgac tcgtccgaca ggaagtagac cgcggcatgg
     1261 gcgacctcgt ccgggtccat cagctcgccg gccagcggct gcttccgccg ggcaaaggcg
     1321 cggatcctgg cgtcgcccga ggccctggcc gccatcggcg tatcggtcag cgacggggcc
     1381 acggcgttca cgcggatccg gtccccggcg tacgtggcgg ccatcgtcgt catcagcgcg
     1441 ttcgtggccc ccttggcagc cgcgtaggcg tgggtcgcga agaactcggg gaccggatcg
     1501 gtcgcggtga cgctgcccat cagcaggatg gagccgcgcg tcccggagct gttcgggtcc
     1561 tgcccgagca tctggcggac gacggcgcga caggtcagcg cctgggtccg caggttgatg
     1621 gccagcgtcc gctcccaccc ctcggcggtc agctcgtgga tcgggccgtc gccgaaccgg
     1681 cggccactcc cgccggcgac ggcgaaggcg ccgtcgatcc gcccgaagcg tgcgaccgcc
     1741 tccgccatcg cccgctcgac gtcggcctcg acggtcaggt cggcggccgc ccagcccgcc
     1801 acgtcccccc gggcggtcag ctcgtcggcg agggcacgag cctcgtccgc caccagcgac
     1861 acgatgaaga cgggcgctcc ctcggcggca aggcggcggg cgctcgcggc ggccatgcca
     1921 gtcgcgcccg tgacgaggca cacccgatcc cgtaggcgat ccaccgcgaa aggatggcac
     1981 gggaggccgc ggcgcggcga ccccattgac gacccgccga tgcgcgtcta tcctccgggt
     2041 atcccgaccg gcacccgcgc tgcggcagcg attccgcgcg caccatttcg cccggccccc
     2101 tcacctgaag gtgacctttc ccacatgccc gcacccggcc ccgaccagcg cgatcgctcc
     2161 cgaaaccgac gcccccgacg gcgtccaccc atcggcggcg gccgcgcgcc ggtcaccgaa
     2221 tacgaggagc agctcgagat cgaggccgcc cgcgagcgga acgacctcga ggtcgccgac
     2281 ctccgcgaga tgagcgtcgc cgagctccgt caggtctcgc gcgagctcga cctcgacacc
     2341 gctccgacgg agcgcaagga cgacctggtc gaccagatcc tccgcggcca gaccgagcgt
     2401 gccggtcacg actacgccag cggcatcctc gacatcgtcg acgagggttt cggcttcatg
     2461 cgccgccacg gcctgctgcc cagccccgac gacgtgtacg tcagctcgag ccaggtccgc
     2521 cgctttggcc tgcgcatcgg cgaccgcgtg gccggcgccg tccgggcccc gcgcgacgcc
     2581 gagaagtact ggggcatgct ccgggtcgac tcggtcaacg gcgtcgatac cgaaaccgcc
     2641 cgccggcgcc cgatcttcgc ggacctcacc ccggtccatc cggacgtcct gatcaacctc
     2701 gagaccgacg ccaagaacct gtcgcaacgg ctggtcaacc tggtcaaccc gatcggcaag
     2761 ggccagcgcg ccctgatcgt gagcccgccg aaagccggca agacgatgct cctcaagcac
     2821 atcgcgaacg ggatctcgac gaactacccg gacatcctcc tcatggccgc cctgatcggc
     2881 gagcgacc
//
LOCUS       DATDDI010000093         1954 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_105903, whole genome shotgun sequence.
ACCESSION   DATDDI010000093 DATDDI010000000
VERSION     DATDDI010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105903"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1748
                     /locus_tag="VIU37_01370"
     CDS             <1..1748
                     /locus_tag="VIU37_01370"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEY6012617.1"
                     /translation="ADQEPADRAALSGQPSNGRGRVAPKPVPAGTSPGQTGAWGEDEA
                     SIIPSAVPSPRPISSTFAPARAAAGSATLVTPRPVRDPDDVTDAGDSPPTKERIEYVL
                     PPITALDDIALPIAAGGDLAAHERNQEIIVKKLAGFGIPAKIVGRNAGPVVTQYEVQP
                     APDVKVSRIEGLSDDLAMALAARSLRIEAPIPGKSAVGIEIPNKDFNVVALRRILEEV
                     DFKASGSTLTFALGRDVAGKAQAVDLAKMPHLLIAGATGSGKSVMVNALITSLLCEAT
                     PDDVRMILMDLKRVELAAYNGLPHLLVPVITEPERAKAALKWAVNEMEARYRRLAGAS
                     ARNIRGFNETRADPEDRMPYIVIIVDELADLMMREGKNVEDPIVRLAQKARATGIHMV
                     LATQRPSVNVVTGLIKANFPSRIAFAMASQIDSRTILDAPGAEDLIGRGDMLYQPSDL
                     PRPMRLQGVFVSDVEIGRVVDHWKAQIDDAHYDMSIIDTGEESTGIVDDLEGEDADRL
                     LHEAVEVIREYDRASASLLQRRLKVGYARAARMIDQLEARGYIGAFDGSNARQVLRRD
                     EPASGRSDDGPDEDD"
     gene            1748..>1954
                     /locus_tag="VIU37_01375"
     CDS             1748..>1954
                     /locus_tag="VIU37_01375"
                     /inference="COORDINATES: protein motif:HMM:NF024805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6012618.1"
                     /translation="MTTREQLRRAVSGDRTEPGRGVASEPAPSLPEWLYAARERKGVD
                     LYRAERDTKIRARYLGALERGDYKE"
BASE COUNT          336 a          688 c          675 g          255 t
ORIGIN      
        1 cggccgacca ggagcctgcc gatcgcgcgg ccctcagcgg ccagccctcg aacgggcgtg
       61 gccgcgtcgc gcccaagccc gtgcccgccg ggacctctcc gggccagacg ggcgcgtggg
      121 gtgaggacga ggcatcgatc attccgagcg ccgtcccgag tccacggccg atctcatcca
      181 cgttcgcacc ggcgagggcc gcagccggct cggcgaccct ggtcacgccg cgcccggtcc
      241 gcgacccgga cgacgtgacc gacgcgggcg attcgccgcc cacgaaggaa cggatcgaat
      301 acgtcctgcc gccgatcacc gcgctcgacg acatcgccct gccgatcgcc gccggcggtg
      361 acctggcggc gcacgagcgc aaccaggaga tcatcgtcaa gaagctggcc ggcttcggca
      421 tcccggccaa gatcgtcggc cgcaacgcgg gacccgtcgt gacccagtac gaggtgcagc
      481 cggcccccga cgtcaaggtc agccggatcg aggggctgtc ggacgacctg gcgatggccc
      541 tcgcggcgcg atcgctccgg atcgaggcgc cgatccccgg caagagcgcg gtcgggatcg
      601 agattccgaa caaggacttc aacgtggtcg cgctccgccg catcctcgag gaggtggact
      661 tcaaggcctc gggctcgacg ctgacgttcg ccctcggtcg tgacgtggcg ggcaaggccc
      721 aggcggtcga cctggccaag atgccgcacc tgctcatcgc cggtgcgacc ggatcgggca
      781 agagcgtcat ggtcaacgcc ctgatcacca gcctgctctg cgaggcgacc ccggacgacg
      841 ttcggatgat cctgatggac ctcaagcggg tcgagctggc ggcctacaac gggctgccgc
      901 acctgctggt cccggtgatc accgagcccg agcgggccaa ggccgcgctc aagtgggcgg
      961 tcaacgagat ggaggcccgc taccggcggc tggccggcgc gtcggcccgc aacatccgcg
     1021 gcttcaacga gacccgggcc gaccccgagg accggatgcc gtacatcgtg atcatcgtcg
     1081 acgagctggc cgacctgatg atgcgcgagg gcaagaacgt ggaggacccc atcgtccggc
     1141 tggcccagaa ggcccgcgcc acgggcatcc acatggtcct cgccacgcaa cggccgtcgg
     1201 tcaacgtggt gaccggcctc atcaaggcca acttcccgag ccggatcgcg ttcgcgatgg
     1261 cctcgcagat cgactcccgg acgatcctcg acgcccccgg cgcggaggac ctgatcggac
     1321 ggggcgacat gctctaccag ccatccgacc tgccgcggcc gatgcgcctc cagggcgtgt
     1381 tcgtgtcgga cgtcgagatc ggccgcgtgg tggaccactg gaaggcgcag atcgacgacg
     1441 cccactacga catgtcgatc atcgacaccg gcgaggaatc gaccgggatc gtggacgatc
     1501 tcgagggcga ggacgccgac cgattgctcc atgaagccgt cgaggtcatt cgggagtacg
     1561 atcgcgcttc ggcgtcgctg ctccagcgcc gcctgaaggt cggctacgca agggccgccc
     1621 ggatgatcga tcaactggaa gcgcgcgggt acatcggggc gttcgacggc tcgaacgcgc
     1681 ggcaggtcct tcgtcgcgac gaaccggcgt ccggcagatc ggacgatgga cccgatgagg
     1741 acgactgatg acgacccgag aacagctgcg gcgggcagtc tcgggcgacc ggacggaacc
     1801 cggtcgcggc gtcgcgtccg aacccgcccc gagcctgcct gaatggctct acgcggcgcg
     1861 cgagcgcaag ggcgtcgatc tctatcgagc cgaacgcgac accaagatac gggcgcgcta
     1921 ccttggcgcg ctcgagcgcg gcgactacaa ggag
//
LOCUS       DATDDI010000094         2659 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_314086, whole genome shotgun sequence.
ACCESSION   DATDDI010000094 DATDDI010000000
VERSION     DATDDI010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314086"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VIU37_01380"
     CDS             <1..504
                     /locus_tag="VIU37_01380"
                     /inference="COORDINATES: protein motif:HMM:NF019585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HEY6012619.1"
                     /translation="GELPRAGDLVTVDVEWARRFALMRTHTALHALGGVVWRDYGALV
                     TGGNMEPGSGRMDFEFERMSGDLVDSIEATVNAELAAAREVRVAVLPRDEAFAIPDLI
                     RTKVNLLPPGIEEIRTIEIVGLDLQADGGTHVANTAEVGQIHVTGYESKGRINKRIRI
                     ELVDPVA"
     gene            548..985
                     /locus_tag="VIU37_01385"
     CDS             548..985
                     /locus_tag="VIU37_01385"
                     /inference="COORDINATES: protein motif:HMM:NF014373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HEY6012620.1"
                     /translation="MSDLNLQLDLAWRLIVAAVLGALIGIERERHEHPAGIRTHMLVS
                     IGSAAFTVLSIYAFGEGSDPGRVAAQIVTGIGFLGAGSILKGGGTIHGLTTAASLWVV
                     AAVGMAAGAGAWGVAVATTIIVLISLWPVQQIERRFFSHRRQP"
     gene            982..2112
                     /locus_tag="VIU37_01390"
     CDS             982..2112
                     /locus_tag="VIU37_01390"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEY6012621.1"
                     /translation="MSRPAVPNLALPLLSSPLIRRVAWHIRRIGGQLDRRFFLSLGEG
                     IVVFVAIAAILITLFEKPLTIESLFDSFNWGIATVLGQGDAGFVTSPGGRIVGWLLIL
                     FGVAMLGMITGALVAMVIDFLLKEGQGLGASGHQDHIVVCGWNSTARDLIDELRGDDY
                     KQKVVVLADVDKNPAGSGVYFVRGDASDAGDLDRAGITDASAALVFPADGSDEADMHS
                     ILTIMAIKAVAPKVRTVAEVNNPRHEPHFRRADVDELLVTSKVASHLLARSALYPGLS
                     AIVTDIVSGGEGSELYRITLPDEYLGLSIDMVSTRLRSDHKATLLSVNRGGRAFVNPS
                     SDFVLQAGDDAIVVAESLGTLAPLKLHDVHSAAGTLAPATTG"
     gene            complement(2147..>2659)
                     /locus_tag="VIU37_01395"
     CDS             complement(2147..>2659)
                     /locus_tag="VIU37_01395"
                     /inference="COORDINATES: protein motif:HMM:NF014307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HEY6012622.1"
                     /translation="GADDVAIQLACAQHVIVVPGYGLAVAQAQHAVRELAELLEERGV
                     DVKYAIHPVAGRMPGHMNVLLAEANVPYPQLKEMDDINPEFERCDVALVVGANDVTNP
                     AARRPGSPVSGMPILDVDKAHSIVVIKRSMGRGYAGIDNELYTNPKTGMLFADAKDGL
                     AALTAAVKAL"
BASE COUNT          372 a          936 c          931 g          420 t
ORIGIN      
        1 ggggagctgc cgcgagccgg cgacctcgtc accgtggacg tcgagtgggc gcggcgcttc
       61 gcgctgatgc ggacccacac cgcgctccac gccctgggcg gcgtcgtgtg gcgggactac
      121 ggcgcgctcg tgaccggcgg caacatggag ccgggcagcg gccggatgga cttcgagttc
      181 gagcggatgt cgggcgacct cgtcgactcg atcgaagcca ccgtgaacgc cgagctggcg
      241 gccgcacgcg aggtccgcgt ggccgtcctg ccgcgcgacg aggcgttcgc gatccccgac
      301 ctcatccgga ccaaggtcaa cctgctgccc cccgggatcg aggagatccg gaccatcgag
      361 atcgtgggac tggacctgca ggccgacggc gggacgcacg tcgcgaatac ggccgaggtc
      421 ggccagatcc acgtgaccgg ctacgaatcc aagggccgga tcaacaagcg gatccgcatc
      481 gagctggtcg acccggtcgc ctgagcccga ttgtgggcgg cttcccacgg gcgctagact
      541 gccgcgaatg tccgacctga acctgcagct cgatctcgcc tggcggctca tcgtcgcggc
      601 cgtcctcggc gccctcatcg gcatcgagcg cgagcgccac gagcacccgg cggggatccg
      661 gacccacatg ctcgtctcga tcgggtcggc cgcgttcacc gtcctgtcga tctacgcgtt
      721 tggcgaaggg tccgatcccg ggcgtgtcgc cgcgcagatc gtgaccggga tcgggttcct
      781 gggcgcgggc tccatcctca agggcggcgg gacgatccac ggtctcacca ccgccgccag
      841 cctgtgggtc gtggccgcgg tgggaatggc ggcgggtgcg ggcgcctggg gcgtcgccgt
      901 cgcgaccacg atcatcgtgc tcatctcgct ctggccggtc cagcagatcg agcgtcgctt
      961 cttcagccac cgacgccaac cttgagccgg cccgccgtcc cgaatctcgc gctgccactc
     1021 ctgtcgagtc cgctgatccg tcgtgtcgcg tggcacatcc ggcggatcgg cggtcagctg
     1081 gaccggcggt tcttcctgtc gctgggcgag gggatcgtcg tcttcgtcgc gatcgccgcg
     1141 atcctgatca cgctgttcga gaagccgctg acgatcgagt cgctgttcga ctcgttcaac
     1201 tgggggatcg cgacggtgct cggccagggc gacgccggct tcgtgacgtc gcccgggggc
     1261 cggatcgtcg gttggctgct tatcctgttc ggcgtcgcca tgctcgggat gatcaccggg
     1321 gcgctggtcg cgatggtcat cgatttcctg ctgaaggagg gccaggggtt gggcgcatcc
     1381 gggcaccagg accacatcgt cgtgtgcggc tggaacagca ccgcccgtga cctcatcgac
     1441 gagctgcgcg gggacgacta caagcagaag gtcgtcgtcc tcgcggacgt cgacaagaac
     1501 cccgccggca gcggcgtcta cttcgtccgg ggcgacgcga gcgacgcggg cgacctcgac
     1561 cgggcgggga tcaccgacgc ctccgccgcc ctcgtcttcc cggccgacgg atccgacgag
     1621 gcggacatgc actcgatcct gacgatcatg gcgatcaagg cggtcgcccc gaaggtccgc
     1681 acggtcgccg aggtcaacaa cccgcgccac gagccgcact tccggcgggc cgacgtcgac
     1741 gagctgctgg tcacgtccaa ggtggcctcg catctgctcg cgcgatcggc gctctacccg
     1801 ggcctgtccg caatcgtcac cgacatcgtg tccggcggcg aagggtcgga gttgtaccgg
     1861 atcacgctgc ccgacgagta cctcggcctg tcgatcgaca tggtctcgac ccggctgcgg
     1921 tccgaccaca aggccaccct gctgtcggtc aaccggggcg ggcgcgcgtt cgtcaacccg
     1981 tcgagcgatt tcgtcctcca ggccggcgac gacgcgatcg tcgtggccga atcgctcggg
     2041 acgctcgcgc cgctcaagct ccacgacgtg cacagcgcgg ccgggacgct cgccccggcc
     2101 acgacaggct agggcgggcg catgccgcgc cccccggcgc ggccgcctag agcgccttga
     2161 ccgccgcggt cagggcggcc aggccgtcct tcgcgtcggc gaacagcatc ccggtcttcg
     2221 ggttggtgta cagctcgttg tcgatgccgg cgtagccgcg gcccatcgat cgcttgatga
     2281 ccacgatcga gtgcgccttg tcgacgtcga ggatcggcat ccccgagacg ggcgacccgg
     2341 gccggcgggc ggccgggttg gtcacgtcgt tggcgccgac cacgagggcg acgtcgcagc
     2401 gctcgaactc cggattgatg tcgtccatct ccttgagctg cgggtacggc acgttggcct
     2461 cggccagcag cacgttcatg tggcccggca tccggccggc gaccgggtgg atggcgtact
     2521 tgacgtcgac gccgcgctcc tcgagcagct ctgccagctc gcggaccgcg tgctgggcct
     2581 gcgcgaccgc gagcccgtag cccgggacca cgatcacgtg ctgtgcgcag gcgagctgga
     2641 tcgccacgtc atcggcgcc
//
LOCUS       DATDDI010000095         1681 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_730369, whole genome shotgun sequence.
ACCESSION   DATDDI010000095 DATDDI010000000
VERSION     DATDDI010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730369"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VIU37_01400"
     CDS             complement(<1..278)
                     /locus_tag="VIU37_01400"
                     /inference="COORDINATES: protein motif:HMM:NF037053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012623.1"
                     /translation="MFVVMVVGAGEAEILGVKGQILAEGLTPFEHAGSERTVIAVVGE
                     IGARKPVLIDRLSALPGVESVTPISRPFKLTSREFHPEDTVIRVLDAV"
     gene            584..1615
                     /locus_tag="VIU37_01405"
     CDS             584..1615
                     /locus_tag="VIU37_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012624.1"
                     /translation="MAIMPRAVPYPAIALRLAASADVVVAYQARTRILGVAESDPAAV
                     SLRASIADSSRARALLSHRLPDGTIPLNAYAKFQGPHWTLVCLAQIDYPPGDPSLVPI
                     KHQMDGYLADRVHLRPPRTTVYPDQPERVRRCASQEGNAIWSALRLGLEDERTADWVD
                     RLVGLQWPDGGWNCDRRPGARTSSFQETAIPARALHAYAIRFGHPGAQRAADRAAELL
                     LSRRLVWRLRDGAVIRPDWGRPADRIQYPIRFYDVLYALEVMAEMGRLDDPRCADALD
                     LLEAKRLPDGGFPLEERVGSTRPIVASRATFADWGPSGTTRSNPLVTVAALGILRLAG
                     RLRGAGPPA"
BASE COUNT          230 a          634 c          561 g          256 t
ORIGIN      
        1 atcaccgcgt cgagcacgcg gatgacggtg tcctcggggt ggaactcgcg cgaggtcagc
       61 ttgaacggcc ggctgatcgg cgtgacggat tccacgccgg gcagcgccga gaggcggtcg
      121 atcaggaccg gcttgcgggc gccgatctcg ccgaccacgg cgatcaccgt ccgctccgac
      181 ccggcgtgct cgaacggggt caggccctcg gcgaggatct ggcccttgac tccgaggatc
      241 tcggcttcgc cggcgccgac gaccatcacg acgaacatcg cgctcgtgtc tcctcagtcc
      301 gttgctgtcg gtcgttcggc caaacaaaaa agcagaggtc caacctctgc ctcgctcgcc
      361 cgacacgacg tgtgccccgg tctagcgacc ggaagcgatc atgccgggca tcgaaagtag
      421 aagaatcggt tcatgtgcgt gcgtggacgg tagccactgg cgccgtcgat gtcaacgcga
      481 tcgagcggcg cggcgccgac tggcgcgtcc ggccgtccgc gtccgccacg tttgagccaa
      541 acgcctcttg ccgttccatg ggcccggcga cagccttgcc gccatggcca tcatgccgcg
      601 ggccgtcccg taccccgcca tcgcgctccg gctggcggct tccgccgacg tggtcgtcgc
      661 ctaccaggcg cgaacgagga tcctgggcgt cgccgaatcg gatcccgccg cggtctcgct
      721 ccgagcctcg atcgccgatt cgtcgcgagc ccgagccctg ctgtctcatc ggctcccgga
      781 cggcacgatc ccgctcaacg cctacgccaa gttccagggg ccgcactgga cgctggtctg
      841 cctcgcccag atcgactacc cgccaggtga cccgagcctg gtcccgatca agcatcagat
      901 ggatggctac ctcgcggatc gcgtccacct gaggccgccc cgaacgacgg tctacccgga
      961 ccagcccgag cgcgtccgcc gctgtgcgtc gcaggagggc aacgcgatct ggtcggcctt
     1021 gcgcctcggg ctcgaggacg agcggaccgc cgactgggtc gatcgcctcg tcggcctcca
     1081 atggccagac ggcggctgga actgcgacag gcggcccggg gcgcgcacgt cctcgttcca
     1141 ggagaccgcc atcccggccc gagcgctcca tgcctacgcg atccggttcg ggcacccggg
     1201 cgcgcagcgg gccgcggatc gcgcggccga gctgctcctg tcgcgccgcc tcgtgtggcg
     1261 cctccgcgac ggtgccgtga tccgtcccga ctggggcagg cccgccgacc gcatccagta
     1321 ccccatccgc ttctacgacg tcctgtatgc gctcgaggtc atggccgaga tgggccgtct
     1381 ggacgaccct cgctgcgccg acgcgcttga cctgctcgag gccaagcggc ttccggacgg
     1441 cggtttcccc ctcgaggagc gggtcggctc gacccgtccc atcgtcgcca gccgagcgac
     1501 cttcgccgac tgggggccgt cggggacgac gcggagcaac ccgctggtga cggtcgccgc
     1561 gctcggcatc ctccgcctcg ccggccggtt gcggggggcc ggcccgcccg cctgatcagc
     1621 cctcgtcggt ggcgtcgccc agggcgcgcg ccatgatctc cgcgacgacg tccgacttcg
     1681 c
//
LOCUS       DATDDI010000096         3669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_314173, whole genome shotgun sequence.
ACCESSION   DATDDI010000096 DATDDI010000000
VERSION     DATDDI010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314173"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1443
                     /locus_tag="VIU37_01410"
     CDS             <1..1443
                     /locus_tag="VIU37_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012625.1"
                     /translation="RVSLLPLRAIRDRLAARLPLPGSAPRDAPDRQRTLERAIAWSHD
                     LLEPDGQGLLHELAVFDGGFDLEQAVAVCGERAFDGIATFVEQSLVTREPDDPAGGVR
                     FRLLQTIRAFALDRLVADGGEPDARRRHALAYLALAERAAAHLPGRDQPRWLDRLAQD
                     HANLRAATRWAIDAGEAELALRLVAALWRYWQLDGHLHEGRDLAEAALAMPGAEAPTP
                     ARLAAVTAAGGIAYWRSEREDAERRYLEEFELATQLGDDVSAADAVFNRVFTRYISGD
                     VTEALDLIDDAERRYRALGDERGLARLEWSRATIELQSGNSHGAIPRFEHSLVMFEAT
                     DDVLYHAMALGSLAWAHWMLGDARAAGRWLLRSVEETREMRDIASLTISLPALAVYAM
                     EAGEPEAAAMLMGAFASLKEQYGIEAPAGIDFLTNTRRPVERARDDLGQSRYQAAFER
                     GRRMTLEQALDLLDGFEASPGPDERATAAQ"
     gene            complement(1437..2420)
                     /locus_tag="VIU37_01415"
     CDS             complement(1437..2420)
                     /locus_tag="VIU37_01415"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF006667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEY6012626.1"
                     /translation="MASKTFIDAIRETLADEMRRDPSVIVLGEDVGKKGGVFLATDGL
                     WAEFGEERVIDTPLTESMIVGTSIGAAVNGLRPVCEIQFADFIFPAFNQIVSEAARMR
                     YRSNNGYGVPMTIRAPYGGGVHGALYHSQSVEAFFTHVPGLKVVVPSTPHDAKGLLRS
                     SIRDPDPVIFFEHKKMYRSVRGDVPDTDYTVPLGKAAITHPGTQVTVVAYGLMAHYAL
                     EAADRVGEEGISVEVVDLRTLRPLDTETLLDSVRKTGKCLIVYEDNRFGGYGAEVAAI
                     VAEEAFDYLDGPITRVAGPDVPGVPYNHVLEDWFMVNPEKIADGIRTLAAY"
     gene            complement(2420..3463)
                     /locus_tag="VIU37_01420"
     CDS             complement(2420..3463)
                     /locus_tag="VIU37_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010818853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEY6012627.1"
                     /translation="MAVTKDRQSHLGEPYDLSDDDLIEMYRLVALARAVDERMWILNR
                     AGRIPFVISGQGHEGAQVGIAWPLQKGHDWIAPFYRSIATCLTFGMSPRDIMTAQYAT
                     AADPSSGGRQMPGHYGSHEHNIVSVSSPVATQLLHAVGIALAAKIRKTGQVAMTTMGE
                     GSSNQGDVHEGLNFAAIHRLPFVFVVENNGYAISVPAAMQVSVADVAERAAGYGIPGV
                     VVDGADVLACYAASRDAVARARAGDGPTLIEAKVTRLTAHSSDDQQTKYRSAEELAAE
                     KGHDALPRFRAQLRDAGVLTDELEARLAAEIKAAVEDATDYAEGQPDPDPATATRYVY
                     ADEPDAPAPGARA"
BASE COUNT          516 a         1269 c         1312 g          572 t
ORIGIN      
        1 cgcgtctcac tgcttcccct ccgtgcgatc cgcgatcgcc tggcggcacg tctgccgttg
       61 ccgggctcgg cgcctcgcga cgcgcccgac cggcaacgga cgctcgagcg tgccatcgcc
      121 tggagccatg atctgctcga accggacggc caggggctcc tccacgagct ggccgtgttc
      181 gacgggggct tcgacctcga gcaggccgtc gcggtctgcg gtgagcgagc cttcgatggg
      241 atcgcgacct tcgtggagca gagcctggtc acccgcgaac ccgacgatcc tgccggcggc
      301 gttcgattcc gcctgctgca gacgattcgc gccttcgcgc tggatcgcct cgtcgccgac
      361 ggcggtgagc cggacgcccg gcgtcggcac gcgctcgcct acctggccct ggcggaacgt
      421 gccgccgccc acctgccggg ccgcgaccaa ccgcgctggt tggatcgact ggcccaggac
      481 catgcgaatc tccgggccgc cacgcgctgg gcgatcgatg cgggagaagc cgagctggca
      541 ttgcgcctcg tcgccgccct atggcgatac tggcagctcg acgggcacct gcacgaggga
      601 cgtgacctcg ccgaggcagc cctggccatg cccggcgccg aggcacccac gccagctcgg
      661 ctggccgccg tcaccgccgc cggcgggatc gcctattggc gctcggagcg cgaggatgcc
      721 gagcgtcggt acctggagga attcgagctg gctactcagc tcggcgacga cgtttcggcg
      781 gccgatgccg tcttcaatcg ggtcttcacg cgctacatca gcggcgacgt aacggaagcg
      841 ctggacttga tcgacgacgc cgagcgccgg tatcgggcgc tcggcgacga gcgcgggctg
      901 gcccgactcg agtggagccg cgcaacgatc gagctgcagt cgggcaactc gcacggggcg
      961 atcccgcgct tcgagcattc gctggtgatg ttcgaggcaa ccgacgatgt cctgtaccac
     1021 gccatggcgt taggtagtct cgcctgggcc cactggatgc tcggcgatgc gcgtgccgcg
     1081 ggccgctggc tgcttcggtc ggtcgaagag acacgcgaga tgcgggatat tgcctcgctg
     1141 acgatcagcc tgccggccct cgcggtctat gccatggagg cgggcgaacc cgaggcggcc
     1201 gcgatgttga tgggcgcgtt cgccagcctc aaggagcagt acgggatcga ggcgcccgcc
     1261 ggaatcgact tcctgacgaa cacccggcgc cccgtcgagc gggcgcgcga tgacctaggc
     1321 cagtcgcgct accaggcggc cttcgagcgc ggacgccgga tgacgctgga gcaggccctg
     1381 gacctgctcg acggcttcga ggcgtcgccg ggcccggacg agcgggcgac cgctgctcaa
     1441 taggccgcca gcgtccggat cccgtcggcg atcttctccg ggttgaccat gaaccagtcc
     1501 tcgaggacgt ggttgtacgg cacgcccggg acgtccggcc cggcgacccg cgtgatcggc
     1561 ccgtcgaggt agtcgaacgc ctcctcggcg acgatcgcgg cgacctccgc tccgtaaccg
     1621 ccgaaccggt tgtcctcgta cacgatcagg cacttgccgg tcttgcggac cgagtcgagc
     1681 agcgtctcgg tgtcgagcgg gcggagcgtc cgcaggtcga cgacctccac gctgatcccc
     1741 tcctcgccga cgcggtcggc ggcctcgagc gcgtagtgcg ccatgaggcc ataggccacc
     1801 accgtgacct gggtcccggg atgggtgatg gcggccttgc cgagcgggac cgtgtagtcc
     1861 gtgtcgggga cgtccccccg gaccgatcgg tacatcttct tgtgctcgaa gaagatcacc
     1921 gggtcgggat cccggatcga cgagcggagc agccccttgg cgtcgtgcgg cgtggacggc
     1981 acgacgacct tcagcccggg aacgtgcgtg aagaacgcct cgaccgactg cgagtgatag
     2041 agcgccccat ggacgccgcc gccgtacggc gcgcggatgg tcatcggcac gccgtagccg
     2101 ttgttcgagc ggtagcgcat ccgcgcggcc tcggacacga tctggttgaa ggccgggaag
     2161 atgaagtcgg cgaactggat ctcgcacacg gggcgaaggc cattgaccgc cgccccgatc
     2221 gaggtcccga cgatcatcga ttcggtcagc ggggtgtcga tgacgcgttc ctcgccgaac
     2281 tcggcccaca gcccgtcggt ggccaggaag accccgccct tcttaccgac gtcctcgccc
     2341 aggacgatga ccgacgggtc ccgtcgcatc tcgtccgcga gcgtctcgcg gatcgcgtcg
     2401 atgaatgtct tcgaggccat caggcgcgcg ccccgggcgc cggggcgtcg ggctcgtcgg
     2461 cgtagacgta gcgcgtggcc gtcgcgggat cggggtccgg ctgcccctcg gcatagtcgg
     2521 tcgcgtcctc gacggcggcc ttgatctccg cggccaggcg cgcctcgagc tcgtcggtca
     2581 gcacgcccgc gtcgcggagc tgggcgcgga accgcggtag cgcgtcgtgg cccttctcgg
     2641 cggcgagctc ctcggccgag cggtacttcg tctgctgatc gtccgaggag tgagccgtca
     2701 gccgggtcac cttcgcctcg atcagcgtgg ggccgtcacc ggcgcgcgcc cgggcgaccg
     2761 cgtcacgcga cgccgcgtag cacgccagga cgtcggcgcc gtcgaccacg acaccgggga
     2821 tcccatagcc ggccgcgcgc tcggcgacgt cggcgaccga gacctgcatg gcggccggca
     2881 cgctgatcgc gtagccgttg ttctccacca cgaacacgaa cgggagcctg tggatggcgg
     2941 cgaagttgag gccctcgtgg acgtcgccct ggttcgacga gccctcgccc atcgtggtca
     3001 tcgcgacctg gccggtcttg cggatcttgg ccgcgagggc gatgcccacc gcgtggagca
     3061 gctgggtggc caccggcgac gagaccgaca cgatgttgtg ctcgtggctg ccatagtggc
     3121 cgggcatctg gcggccgccc gaggacggat ccgcggccgt cgcgtattgc gcggtcatga
     3181 tgtcgcgcgg gctcatcccg aaggtcaggc aggtggcgat cgagcggtag aacggcgcga
     3241 tccagtcgtg acccttctgg agcggccagg cgatcccgac ctgggcaccc tcgtggccct
     3301 ggccgctgat gacgaacggg atccggccgg cccggttgag gatccacatc cgctcgtcga
     3361 cggcccgagc gagggcgacg agccggtaca tctcgatgag gtcgtcgtcg gacaggtcat
     3421 agggctcgcc gagatgggac tggcgatcct tggtcacggc catcggtcgg ttctggcctc
     3481 ctgctggcag cgagccgtgt tcgattcccg ccctagaagt tgctcgagcg cccgtcgacc
     3541 gccatcgcgg cctcgccgat ggcctcggcg tatgtgggat gggcgtgggt ggcggcgccg
     3601 atctcccacg gcgtcgcctc gagccacagc gcgagcgagg cctcggcgat gaggtcggtc
     3661 gcgtggggg
//
LOCUS       DATDDI010000097         5498 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_85327, whole genome shotgun sequence.
ACCESSION   DATDDI010000097 DATDDI010000000
VERSION     DATDDI010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5498
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85327"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3852
                     /locus_tag="VIU37_01425"
     CDS             <1..3852
                     /locus_tag="VIU37_01425"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY6012628.1"
                     /translation="GLFEDVIDESFTLFGVDAAGLWTYDGSPQPLRLAAQRGLAQDVL
                     DIVATLPRDAPTAGMEAMHDREVRVLGGDLPGTIPDVRARYLAAGIRTVCYVPIVFGD
                     ETLGLLVLYHTTDYNWTADETELARAFADHMATAISNARLADSTRTLAERLRAISELA
                     GRLNRLQDAHGVARAIVAEARRLIDYDTIRVYRVDHETGMCEPIAFHGTFQGSSMPDM
                     ETLRVPIGTGLTGWVAAHGKTIRLGDAGSDTRTLNLVASDRPESALLVPMTYEKTVHG
                     VLVVSKDGRDRFDADDETTLNIFAGYAAHALLNATNMERLHRQQVELEHQLDGQRRLL
                     EVNERLLSTLEPAGVLDLIADSLKAIVPYDSLTMYRIDRAAGVRRAVVARDRFADLIL
                     AYEGPLGTGISGWVIEHCEAVCANEAHLDPRSVQVPGTPFEPEAMIVVPLLVNGEAIG
                     TLNIGRMGGPEASFSANEFELTQLFAGQASIALQNAEIHGAVRVRAEHDALTGLRNHG
                     SFQRELGEAIANGGPGPMSILMLDLDAFKRYNDACGHPAGDSLLAALATVLKSATRDG
                     DCLYRYGGDEFAAILPGADRQAAHEVAERIRHAVGELSDSIGGPPVTISVGVACYPDD
                     GRTKDVLVGVADRALYLAKPVGRSATGHEPQADPYLRALGETALSLLDRHDPTVLLET
                     IMTRATSLLGTPHCYIYLVEPGDEELVVRHGTGLFAGYVGRRMSVGEGLVGQVFRTAA
                     PVAVDDYDSWAGRSASIATGSVGAVVGVPLMSAGRVVGVLGLASGELQRDWGQREIDA
                     LTSFAQLASIALDNARLVDAAQRGALYDTTTGLPNRELLTDRIARALSTGRPDGADQV
                     GVILLDLDRFKVINESVGHNVGDRLLVAVGQRLVGCLRPGDTVARFGGDEFGILLDEV
                     GGADEARAVAERIGSELRAPFPMGAREWFISASIGISLGQPGRATPEEMLREAEIAMV
                     RAKADPAKRHALFEPSMSDQTIERIDLENDLRQAIERGELRLHYQPLIDLETERVIGF
                     EALVRWQHPVRGLVPPIAFIPLAEETGLILPLGRWVLETACRQAKAWRDARPNGPDLF
                     MSVNLSARQFVQADLVDQVATILSETGLEPTGLEIEITESVLMDQSETGIRTLGRLRE
                     LGVRLVLDDFGTGYSSLSYLKHLPLDTIKIDRTFVAGLADVTDRSIVEAVVALARGLR
                     IGVVAEGIETETQRRLLHAIGCDVGQGYLFSRPLPADEAERLISRRRLRAVSRVPSTS
                     AARKPGGPGAAARSRQALRAS"
     gene            complement(3877..4599)
                     /locus_tag="VIU37_01430"
     CDS             complement(3877..4599)
                     /locus_tag="VIU37_01430"
                     /inference="COORDINATES: protein motif:HMM:NF013214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEY6012629.1"
                     /translation="MNQNPIPNRLSGSPATPSTLGVRPDTRLATAFLTQAFVWMFAGL
                     LLSAGVAWAVQSNEQLIGFAADNFFLLVIAQLALVFVISGAINRINASVALLLFFVYA
                     ATLGVTLGLIVSLYSGASVVTAFLSASSMFGAAAIYGAVTKRSLAGLGGILFMGVIGL
                     IVAMVINLFLASTMLTWLVSIAGVVIFTALTAYDVQRIGAGDLAAATGSMEKAAVLGA
                     LRLYLDFINLFLFMLRLLGGRN"
     gene            complement(4628..5005)
                     /locus_tag="VIU37_01435"
     CDS             complement(4628..5005)
                     /locus_tag="VIU37_01435"
                     /inference="COORDINATES: protein motif:HMM:NF013999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEY6012630.1"
                     /translation="MTDSTTQTSPEAAASATNGTGPATTGTEPAFDAQRRATELAILD
                     ALRAVVDPEIGMNVVELALIKQILLGPDTTEIKMILTTPFCPYAGSMIAQVKEQAESV
                     VDHDVKVTLLAERWDPRDAGLMW"
     gene            complement(5072..5401)
                     /locus_tag="VIU37_01440"
     CDS             complement(5072..5401)
                     /locus_tag="VIU37_01440"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HEY6012631.1"
                     /translation="MTIKWVQQDPLVMNGEPFCYNSRLTVRQLLEERSNGYDLTRILT
                     DHPELRVVGVAAAFAYAADHRDRYAEFFEADGSLAGPGYSEAEAAGLPAQYRIPGVVV
                     TAGAPAA"
BASE COUNT          827 a         1951 c         1944 g          776 t
ORIGIN      
        1 ggcctcttcg aggatgtcat cgacgagtcg ttcaccctgt tcggggtgga tgccgcgggc
       61 ctgtggacct acgacggatc cccgcagccg ctcaggctcg cggcccagcg cgggctggcg
      121 caggacgtgc tcgacatcgt cgcgaccctg ccacgcgacg ccccgacggc cggcatggag
      181 gcgatgcacg accgcgaggt ccgggtcctg ggcggcgacc tgccgggcac gatccccgac
      241 gtccgcgcac gctacctggc ggccgggatc cgcacggtct gctacgtccc gatcgtgttc
      301 ggcgacgaga cactgggcct gctcgtcctg taccacacca ccgactacaa ctggacggcc
      361 gacgagaccg agctcgcccg cgcgttcgcc gaccacatgg cgacggcgat cagcaacgcg
      421 cgcctggccg attcgacgag gacgctggcg gagcggctgc gggcgatctc cgagctggcc
      481 ggccgactca accgcctgca ggacgcccac ggcgtcgccc gggccatcgt cgccgaggcc
      541 cggcggctga tcgactacga cacgatccgc gtctaccgcg tcgaccacga gaccggcatg
      601 tgcgagccga tcgcgttcca cggcacgttc caaggctcgt ccatgccgga catggagacg
      661 ctccgcgtcc cgatcggcac gggactgacc ggctgggtcg cggcgcacgg caagacgatc
      721 cggctgggcg atgccggcag cgacacgcgg accctgaacc tggtcgccag cgaccgaccc
      781 gaatccgcac tcctggtccc gatgacctac gagaagacgg tccacggcgt cctcgtcgtg
      841 tccaaggacg gccgcgaccg gttcgacgcc gacgacgaga ccacgctgaa catcttcgcc
      901 ggctatgcgg cccatgccct gctcaatgcc acgaacatgg agcgtctcca ccgccagcag
      961 gtggagctcg agcaccagct ggacgggcag cgccgcctcc tcgaggtgaa cgaacggctg
     1021 ctgtcgaccc tcgagccggc cggcgtgctg gacctgatcg ccgattcgct caaggcgatc
     1081 gtgccgtacg actcgctgac catgtaccgg atcgaccggg ccgccggcgt ccgccgcgcg
     1141 gtcgtcgccc gcgaccggtt cgccgacctg atcctcgcct acgagggccc gctcgggacc
     1201 gggatctccg gctgggtcat cgagcactgc gaggcggtct gcgccaacga ggcgcacctc
     1261 gatccacgct cggtccaggt gcccgggacg ccgttcgagc ccgaggccat gatcgtcgtc
     1321 ccgctgctcg tcaacggcga ggcgatcggg accctcaaca tcggccggat gggtggcccg
     1381 gaggcgtcgt tcagcgccaa cgagttcgag ctcacccagc tcttcgcggg ccaggcgtcg
     1441 atcgcgctcc agaacgccga gatccacggt gccgtccggg ttcgcgccga gcacgacgcc
     1501 ctgaccgggc tccgcaacca cggatccttc cagcgcgagc tcggcgaggc gatcgccaac
     1561 ggcggccccg gcccgatgtc gatcctgatg ctcgacctcg acgcgttcaa gcgctacaac
     1621 gacgcgtgcg gccatcccgc cggcgattcg ctcctggccg ccctggcgac ggtcctcaag
     1681 agcgcgacgc gcgacggcga ctgcctctac cgctacggcg gcgacgagtt cgccgccatc
     1741 ctgcccggtg ccgaccgcca ggccgcccac gaagtcgccg agcggatccg gcacgccgtc
     1801 ggggagctgt cggactcgat cggcggacca cccgtgacga tcagcgtcgg cgtggcctgc
     1861 tacccggacg acggacggac caaggacgtc ctggtcgggg tggccgaccg ggcgctctac
     1921 ctggccaagc cggtcggccg gtccgcgacg ggccacgagc cccaggccga tccctatctc
     1981 cgggcgctcg gcgagaccgc cctgtcgctg ctcgaccggc acgacccgac ggtcctgctc
     2041 gagacgatca tgacccgggc gacatcgctg ctcggaacgc cgcactgcta catctacctg
     2101 gtcgaaccgg gcgacgagga gctcgtcgtc cggcacggca ccggcctgtt cgccggctac
     2161 gtcggtcggc ggatgtcggt cggagaagga ctcgttggcc aggtcttccg gacggccgcg
     2221 ccggttgccg tggacgacta cgacagctgg gccgggcgat cggcgtcgat cgcgacgggc
     2281 tccgtcggcg ccgtggtggg cgtgccgctg atgtcggccg gacgcgtcgt cggcgtgctc
     2341 gggctggcct ccggggagct ccagcgcgac tggggacagc gcgagatcga cgccctgacg
     2401 agcttcgccc agctggcgtc gatcgcgctc gacaacgcca ggctcgtcga cgccgcgcaa
     2461 cgcggcgccc tgtacgacac gaccaccggg ctcccgaacc gcgaactcct gaccgatcgc
     2521 atcgcgcgcg ccctgtcgac gggccgcccg gacggcgccg accaggtcgg cgtcatcctg
     2581 ctcgatctcg accggttcaa ggtcatcaac gagagcgtcg gccacaacgt cggcgaccgg
     2641 ctgctggtgg ccgtcgggca gcgcctggtc ggctgcctgc gcccgggtga caccgtcgcc
     2701 cgcttcggtg gcgacgagtt cgggatcctg ctcgatgagg tcggcggcgc cgacgaggca
     2761 cgcgccgtcg ccgaacggat cggatcggag ctgcgagccc cgttcccgat gggcgcccgc
     2821 gagtggttca tcagcgcgtc gatcgggatc tcgctcggcc agccgggcag ggccacgccc
     2881 gaggagatgc tccgcgaggc cgagatcgcg atggtccgtg ccaaggcgga tccggccaag
     2941 cgccacgcgc tgttcgagcc ctcgatgtcg gaccagacga tcgaacggat cgatctcgag
     3001 aacgacctgc gccaggcgat cgaacggggc gagcttcgcc tgcactacca gccgctgatc
     3061 gacctggaaa ccgagcgggt catcggcttc gaggcgctcg tccgctggca gcatccggtc
     3121 cgcggactgg tgccgccgat cgcgttcatc ccgctcgcgg aggagaccgg cctgatcctg
     3181 ccgctcgggc ggtgggtgct cgagaccgcc tgccgtcagg cgaaggcgtg gcgcgacgct
     3241 cggccgaacg ggcccgacct gttcatgtcg gtcaacctgt ccgcccggca gttcgtccag
     3301 gcggacctgg tcgaccaggt cgcgacgatc ctgagcgaga ccggcctcga accgaccggg
     3361 ctcgagatcg agatcaccga gagcgtcctg atggaccagt ccgagaccgg gatccgtacc
     3421 ctcggccggc tgcgggagct cggcgtccgg ctcgtgctcg acgacttcgg caccgggtac
     3481 tcgtcgctgt cctacctgaa gcacctgccg ctcgacacga tcaagatcga tcggaccttc
     3541 gtggccggac tggctgacgt gaccgaccgg tcgatcgtcg aggccgtcgt ggcgctcgcg
     3601 cgcggcctgc ggatcggggt cgtggccgag gggatcgaaa ccgagaccca gcgtcgcctg
     3661 ctgcacgcca tcggctgcga cgtcggccag ggctacctgt tctcgcggcc gctccccgcg
     3721 gacgaggccg aacggctgat ctcgaggcga cgcctgcgcg cggtcagccg cgtcccgagc
     3781 acgtcagcgg cgcgcaagcc gggcggtccc ggtgccgcgg cgcggagccg gcaggcgctg
     3841 cgcgcgagct gaccccgcag ccctgcggag tcgcggtcag ttgcgcccgc cgagcaggcg
     3901 gagcatgaac aggaacaggt tgatgaagtc gaggtagagg cggagcgcgc cgaggacggc
     3961 cgccttctcc atcgagccgg tcgccgccgc caggtcgccg gcgccgatcc gctggacgtc
     4021 gtaggcggtc agcgccgtga agatcaccac gccggcgatc gacaccagcc aggtgagcat
     4081 ggtgctcgcc aggaacaggt tgatgaccat cgccacgatc aggccgatga cgcccatgaa
     4141 caggatcccg ccgaggccgg cgagcgaccg cttggtgacg gccccgtaga tcgccgccgc
     4201 cccgaacatc gatgacgcgc tcaggaacgc ggtcacgacc gacgccccgc tgtacagcga
     4261 cacgatcagc ccgagcgtga cgccgagggt cgccgcgtag acgaagaaga ggagcagcgc
     4321 cacgctggcg ttgatccggt tgatcgcgcc gctgatcacg aacacgagcg cgagctgcgc
     4381 gatcacgagc aggaagaagt tgtcggcggc gaagccgatc aactgttcgt tgctctggac
     4441 ggcccaggcg acaccggccg acagcaggag gccggcgaac atccagacga aggcctgggt
     4501 gaggaacgcg gtggcgaggc gggtgtccgg ccggacgccc agcgtcgacg gggtcgccgg
     4561 ggagcccgac agtcggttcg ggatcgggtt ctggttcatc ggggcggggt ctccgtgctg
     4621 cgtggtctca ccacatcagg ccggcgtcgc gggggtccca ccgctcggcc agcaaggtca
     4681 ctttcacgtc gtggtcgacg acggattcgg cctgctcctt gacctgcgcg atcatcgagc
     4741 cggcgtacgg gcagaacggc gtggtcagga tcatcttgat ctcggtcgtg tcggggccga
     4801 gcaggatctg cttgatcagg gccagctcca cgacgttcat cccgatctcg ggatcgacca
     4861 cggcgcggag cgcgtcgagg atcgccagct ccgtcgcgcg gcgctgggcg tcgaaggcgg
     4921 gctcggtgcc ggtcgtcgcg ggaccggtgc cgttggtggc cgatgcggcc gcctctgggg
     4981 acgtctgggt ggtgctgtcg gtcatcgagt tctccgggtg cgtcgcctga gcgtaccacc
     5041 aggccgtcga acggcctgcc ggcggccccg gtcaggcggc gggggctccg gccgtcacga
     5101 ccacgcccgg gatccggtac tgggcgggca gcccggcggc ttccgcctcg ctgtagccgg
     5161 ggccggccag cgagccgtcc gcctcgaaga actcggcgta gcggtcccga tggtcggcgg
     5221 cgtaggcaaa cgcggcggcc accccgacca cccgcagctc gggatgatcg gtcaggatcc
     5281 gggtcaggtc atacccgttc gaacgctcct cgagcagctg gcgcacggtc agccgcgagt
     5341 tgtagcagaa gggctcgccg ttcatcacga ggggatcctg ctggacccac ttgatggtca
     5401 tcgtcaggcg cccttgtaga tgaaggcgat gaaggcgttg cgcttccggg cgtcgccgcc
     5461 gatccggcga tgccagcgga gggcggcgcc ggccgcgt
//
LOCUS       DATDDI010000098         2118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_418334, whole genome shotgun sequence.
ACCESSION   DATDDI010000098 DATDDI010000000
VERSION     DATDDI010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418334"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /gene="folK"
                     /locus_tag="VIU37_01445"
     CDS             <1..622
                     /gene="folK"
                     /locus_tag="VIU37_01445"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEY6012632.1"
                     /translation="GRRVRAYVGLGANLGDAEATLAAVIVALASFAGVRLRGVSRLYA
                     TAPVGLTDQPEFRNAVVALDVPAGADAAAGALDLLGRLKRLESDFGRRPRERWGPREI
                     DLDLLVFGRARLAIERTRETRSMDAGLDAAKASKRLEVPHPRAASRLFVLAPLADLAP
                     GLVPPGWGRSVERARRRQASIEGPQAVRAVAEWDVGRARWRPVQPR"
     gene            complement(610..1329)
                     /locus_tag="VIU37_01450"
     CDS             complement(610..1329)
                     /locus_tag="VIU37_01450"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: protein motif:HMM:NF015534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016805 - dipeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase E"
                     /protein_id="HEY6012633.1"
                     /translation="MIQPSKRTIVAMGGNGVEEPYNPLVDDHVLELARRNRGRERPRV
                     CFVPTASGDSPAYIAAFYAAFARRAEVSHLGLFGRTVVDLERFVLDQDVVYVGGGNTA
                     NMLAVWRVHGLDRILARAWDDGIVLAGTSAGANCWFESSSTDSFGPLAALDDGLGFLA
                     GSHSPHYDGEAARRPLFRQLIGQGAMAGGFASDDGAALVFRDRDLVEAVASLPGARSY
                     RVVRGSDGDAIETELPTRYLG"
     gene            1383..>2118
                     /locus_tag="VIU37_01455"
     CDS             1383..>2118
                     /locus_tag="VIU37_01455"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03557 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY6012634.1"
                     /translation="MTRIGYAAMLEQFHPTDLLDYCAAAEDAGFSAGFMVSEHFHPWT
                     PQQGQSAFAWAFMGALGTRTTLPFGTAVTCPGFRYHPAVIAHAAATLGAMFPGRFWLG
                     LGAGEALNEHVLGGEWPEIGVRSEMLFEGIEIIAKLFSGNVTKHRGKHFQLESAKLYT
                     RPEERVPIYVATSGPLNAKRTGKYADGMITVGAADEKIGMLWDKFDEGAREAGKDPKG
                     KPKLLQIHLSWAPTDEEAMDNALREWP"
BASE COUNT          305 a          738 c          790 g          285 t
ORIGIN      
        1 cggacgacgg gttcgcgcgt acgtgggtct cggagcgaat ctcggcgacg ccgaggccac
       61 gctggccgcc gtcatcgtcg cgctcgcgag cttcgccggt gtccgactgc gcggggtgtc
      121 gcggctgtac gccaccgcgc cggtggggtt gaccgaccag cccgagttcc ggaatgccgt
      181 cgtcgccctg gacgtgccgg ccggcgcgga cgccgcggcc ggcgcgctgg acctgctcgg
      241 gcggttgaag cggctcgaat ccgatttcgg ccggcgaccg cgcgagcgct gggggccgcg
      301 cgagatcgat ctcgatctgc tggtcttcgg ccgggccagg ctggcgatcg agcggacccg
      361 ggagacgcgg tcgatggatg ccgggctcga tgcggccaag gcgtccaagc gcctggaggt
      421 gccgcatccc cgggccgcga gccggctgtt cgtcctggcg ccgctggcgg acctggcgcc
      481 cggcctggtg ccccccggct ggggacggtc ggtcgagcgg gcgcggcgcc ggcaggcgtc
      541 gatcgagggt ccgcaggcgg tccgcgcggt tgcggagtgg gacgtcggcc gggcgcgatg
      601 gcgcccggtt cagccgaggt agcgcgtcgg cagctccgtc tcgatcgcgt cgccgtccga
      661 gccgcgcacg acccggtagc tgcgagcccc cggcagcgac gcgacggctt ccaccaggtc
      721 gcgatcgcgg aacacgaggg cggcgccgtc gtcggacgcg aagcccccag ccatggcgcc
      781 ctgcccgatg agctgccgga acagtggtcg gcgggccgcc tcgccgtcgt agtgggggga
      841 gtggctcccg gccaggaacc cgagcccgtc gtccagggcc gccagcggcc cgaacgagtc
      901 ggtggacgag ctctcgaacc agcagttcgc tccggccgac gtgcccgcca gcacgatccc
      961 gtcgtcccag gcgcgggcga ggatccggtc caggccgtgc acacgccaga ccgcgagcat
     1021 gttggccgtg ttgccgccgc cgacgtagac gacgtcctgg tcgaggacga accgctcgag
     1081 atccacgacg gtccgcccga agagccccag gtgcgagacc tcggcgcggc gggcgaacgc
     1141 ggcgtagaac gccgcgatgt aggcgggcga atcgccgctg gcggtcggga cgaagcagac
     1201 tcgaggacgc tcgcggcccc ggttgcgccg ggccagttcg agtacgtggt cgtccacgag
     1261 ggggttgtac ggctcctcga cgccgttgcc gcccatggcc acgatcgtgc gcttcgaagg
     1321 ctggatcacg tggtgatgct accctcgcag ggcataaacg gacggcgaac ggaggccttc
     1381 acgtgaccag gatcggctac gcggccatgc tcgagcaatt ccacccgacc gacctgctcg
     1441 actactgtgc cgcggccgag gatgccggct tctcggccgg cttcatggtc agcgagcact
     1501 tccatccgtg gacgccgcag cagggccaga gcgcgttcgc ctgggcgttc atgggcgccc
     1561 tcgggacgcg gaccacgctc ccgttcggga ccgccgtgac ctgcccgggc ttccgctatc
     1621 acccggcggt gatcgcccac gcggcggcga ccctgggcgc gatgttcccc gggcggttct
     1681 ggctgggcct cggcgcgggc gaggcgctca acgagcacgt cctcggcggc gaatggccgg
     1741 agatcggcgt tcgctccgag atgctgttcg aggggatcga gatcatcgcc aagctcttca
     1801 gcggcaacgt cacgaagcat cgcggcaagc acttccagct ggagagcgca aagctgtaca
     1861 cccggccgga ggagcgcgtc ccgatctacg tcgccacctc cgggccgctc aatgcgaagc
     1921 ggaccggcaa gtacgccgac gggatgatca ccgtcggcgc ggccgacgag aagatcggca
     1981 tgctctggga caagttcgac gagggcgccc gcgaggccgg caaggacccg aagggcaagc
     2041 cgaagctgct ccagatccac ctgtcctggg ccccgaccga cgaggaggcc atggacaacg
     2101 ccctgcgcga gtggccga
//
LOCUS       DATDDI010000099         1550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_668071, whole genome shotgun sequence.
ACCESSION   DATDDI010000099 DATDDI010000000
VERSION     DATDDI010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_668071"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..815)
                     /locus_tag="VIU37_01460"
     CDS             complement(<1..815)
                     /locus_tag="VIU37_01460"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6012635.1"
                     /translation="MDYRYLIVGGGMTGHAAAAAIREKDPNGKLGIIGADPDRPYARP
                     PLSKGLWLGKPEDKVWMPDVPGLDLHVGRRVAVADTKKREVRDDQGNVHRYEKLLLAT
                     GGQPRKLPQGGDRVIYYRTFRDYQRLRDVKGKSIVVIGGGFIGSEVAAALTANGKQVT
                     MVFPEDAIGARVYPAELARSITRYFEEKGVRVLANDTVAGIEERGAKTAVKTAKGHEL
                     VADVVVAGLGILPNEQLAVQAGLEAGNGIPVDDRGRAGREDVFAAGDVARFPSA"
     gene            complement(895..>1550)
                     /locus_tag="VIU37_01465"
     CDS             complement(895..>1550)
                     /locus_tag="VIU37_01465"
                     /inference="COORDINATES: protein motif:HMM:NF014708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEY6012636.1"
                     /translation="WLDTRHTFSFADYHDEEHMGFRSLRVVNEDRVQPGEGFPTHGHR
                     DMEILSYVLSGALAHRDSTGGSGVLRPGEVQRMSAGTGVRHSEFNGSRSEPVHFLQIW
                     ILPDRAGHAPSYEQRPFPDAERRNRLRLVASPGGEDGSLRIHADARVYASVLAGESVR
                     HALAPGRHAWVQVARGELTVNGRLLRAGDGAAVSDEPELVLAGRGPADAEALLFDLS"
BASE COUNT          191 a          571 c          556 g          232 t
ORIGIN      
        1 gccgacggga agcgcgccac gtcgccggcg gcgaagacgt cctcgcggcc cgcgcggccg
       61 cggtcgtcga cggggatgcc gttcccggcc tcgagccccg cctgcacggc cagctgctcg
      121 ttcggcagga tgccgagccc ggcgacgacg acgtccgcga cgagctcgtg gcccttggcc
      181 gtcttcaccg ccgtcttcgc gccgcgctcc tcgatccccg cgaccgtgtc gttcgcgagc
      241 acgcggacgc ccttctcctc gaagtagcgg gtgatcgatc tcgccagctc ggccgggtag
      301 acgcgcgcgc cgatggcgtc ctcggggaac accatcgtca cctgcttgcc gttcgccgtg
      361 agcgccgccg cgacctcgga gccgatgaag ccgccgccga tgacgacgat gctcttgccc
      421 ttcacgtcgc ggaggcgctg gtagtcgcgg aacgtccggt aatagatgac gcggtctccg
      481 ccctggggga gcttcctcgg ctggccgccg gtggcgagga ggagcttctc gtaccggtgg
      541 acgttgccct gatcgtcgcg gacctcgcgc ttcttcgtgt cggcgacggc gacgcgacgg
      601 ccgacgtgca ggtcgagccc ggggacgtcc ggcatccaca ccttgtcctc gggcttcccc
      661 agccagagcc ccttcgagag cggaggccgg gcatacggcc tgtccggatc cgcgccgatg
      721 atccccagct tgccgttcgg atccttctcc cggatcgccg ccgcggcggc gtggcccgtc
      781 atccctcccc cgacgatcag atagcggtag tccatgagcg tctccttggt cgcttggatg
      841 ctcctgttgc cgggcgcgtt tcggcgcgcc ccacccggag gggttcggag ccgatcagga
      901 cagatcgaac aggagcgcct cggcgtcggc cgggccgcgc cccgcgagga cgagctcggg
      961 ctcgtccgag acggcggccc cgtcgccggc ccggagaagc cggccgttca cggtcagctc
     1021 tccgcgcgcc acctggaccc acgcgtgccg gccgggcgcg agcgcgtggc ggacgctctc
     1081 gccggcgagg accgacgcgt acacccgcgc gtcggcgtgg atgcggagcg agccgtcctc
     1141 gcctcccggc gacgccacga ggcggagccg gttccgcctc tccgcgtcgg ggaacggcct
     1201 ctgctcgtag gacggcgcgt gccccgcgcg atcgggcagg atccagatct ggaggaagtg
     1261 caccggctcg gacctcgagc cgttgaactc gctgtgccgg acgccggtgc cggcgctcat
     1321 gcgctgcacc tcgccggggc ggagcacgcc gctgccgccc gtcgagtccc ggtgcgccag
     1381 cgcgccggag aggacgtacg agaggatctc catgtcgcgg tggccgtgcg tcgggaagcc
     1441 ctcgcccggc tggacgcggt cctcgttcac cacgcggagc gagcggaacc ccatgtgctc
     1501 ctcgtcgtgg tagtccgcga aggagaaggt gtggcgggtg tcgagccagc
//
LOCUS       DATDDI010000100         1634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_439180, whole genome shotgun sequence.
ACCESSION   DATDDI010000100 DATDDI010000000
VERSION     DATDDI010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439180"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..677)
                     /locus_tag="VIU37_01470"
     CDS             complement(<1..677)
                     /locus_tag="VIU37_01470"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEY6012637.1"
                     /translation="MGKNVAVFVDVANIFYAAKAAGVDIDYVTLLKSATAGRDLVRAY
                     AYTGLDPDNENQRNFHEFLRRSNYKVVSKDIRKYGDGKVKANLDIELVVDMMKTARNL
                     DIAIVVSGDGDFAPAIRAVQEMGVRCEVISFRGNTSSDLIEVADQFTDIVQLARVEKG
                     SRSGRRVAEDDADLSMTEVPDKLTEGTGSGRGGRSRGRRFRDEEPAAAGARGRRERGA
                     PAAAAVAA"
     gene            complement(743..1207)
                     /locus_tag="VIU37_01475"
     CDS             complement(743..1207)
                     /locus_tag="VIU37_01475"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6012638.1"
                     /translation="MEYLVRAARVTDIEQFVALCDASLRVDRDQSPLGAADLLRQLVY
                     LPQADIVVAEARRVVVGGAILALRPSVRAGGYIGTVDLLVVDPSHDVDRLTEALLDEL
                     LRSARNKGCTVVEAAQPDDPDAQARWERMGFRPAGARLIRTVTAAGAASRTR"
BASE COUNT          238 a          574 c          565 g          257 t
ORIGIN      
        1 gccgccacag ccgcggccgc cggagctccg cgctcccgcc gcccacgcgc gccggcagcg
       61 gccggctctt cgtcacggaa gcggcgccca cgcgaccgtc cgccacgccc tgacccggtc
      121 ccctcggtca gcttgtccgg cacctcggtc atcgacaggt cggcgtcgtc ctcggcgacc
      181 cggcgaccgg aacgtgagcc cttctcgacg cgggccagct ggacgatgtc ggtgaactgg
      241 tcggcgacct cgatcaggtc ggagctggtg ttgccgcgga agctgatgac ctcgcagcgg
      301 acgcccatct cctggaccgc gcggatcgcg ggcgcgaagt cgccgtcgcc ggacacgacg
      361 atcgcgatat ccaggttccg agcggtcttc atcatgtcga cgaccagctc gatgtcgagg
      421 ttcgccttga ccttgccgtc gccgtacttg cggatgtcct tgctgacgac cttgtagttg
      481 ctgcggcgca ggaactcgtg gaagttgcgc tggttctcgt tgtccggatc gaggccggta
      541 taggcatacg cgcgcacgag gtcgcgaccg gccgtggccg acttgaggag cgtgacgtag
      601 tcgatgtcca cgccggcggc cttggccgca tagaagatgt tcgccacgtc cacgaagacg
      661 gcgacgttct tgcccatatc gactccttga atgatctagc gggtcgtccg gccggcgcgc
      721 gcgcgctgct cggcccggac gttcatcggg ttcgactcgc ggccccggcc gcggtgacgg
      781 ttctgatcag gcgtgccccc gcggggcgaa agcccatccg ttcccagcgc gcctgcgcgt
      841 ccgggtcgtc cggctgggcg gcctccacga cggtgcagcc cttgttgcgt gccgaccgca
      901 gcagctcgtc caggagcgcc tcggtcagcc gatccacatc gtgagacgga tcgaccacca
      961 ggaggtcgac ggtcccgata tagccgccgg cacggaccga cggccggagc gcgaggatcg
     1021 cgccgccgac cacgacgcgc cgcgcctcgg cgaccacgat atccgcctgc ggcaggtaga
     1081 cgagctggcg caggaggtcc gccgctccga gcgggctctg atcacgatcc acgcgcagcg
     1141 acgcgtcgca cagggcgacg aactgctcga tatccgtgac acgggccgct cggaccaggt
     1201 attccacgcc gacgggtcca acctcgcagg gttcggcgac cgctgccctc gaccggggct
     1261 cgaccgagct ggacgaccgg ggctcgcgat ccgctcgtcg ggcggcgagc gaaggacgct
     1321 cgcgacgcgc tgagggcgcg gccgaccggt attgcattca ggtcgccaat gcatatgata
     1381 cggcatcgct tcggcggcca cctgcgcgct gcccggaggc gagacctcga gttggcactc
     1441 gtccctgttt caccgtacgc gtccgatcgc cgagaggggc gcctggatcg tcgcacggcg
     1501 accaagcgag ggtccccgcg ggctttgccc cggtcctggg ccgggtcggc gacgaccgta
     1561 ggtttggagg agacctggat gaaactacac aagttggggg cactcgcggc tgtcagcgcg
     1621 ctggcattcg cggc
//
LOCUS       DATDDI010000101         2273 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_605631, whole genome shotgun sequence.
ACCESSION   DATDDI010000101 DATDDI010000000
VERSION     DATDDI010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605631"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VIU37_01480"
     CDS             complement(<1..264)
                     /locus_tag="VIU37_01480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012639.1"
                     /translation="MGERTLIKGGIVLTQDPSLGEMAGADILVEDDRIVDVRHGISAD
                     GAKVIDATGDIVIPGFVDTHRHTWETSIRTCAPDYALITYFSAI"
     gene            complement(336..1235)
                     /locus_tag="VIU37_01485"
     CDS             complement(336..1235)
                     /locus_tag="VIU37_01485"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6012640.1"
                     /translation="MTAVGLLGTGRMGSSMAHALAAAGFEVVCWNRTPEPAAALAAEL
                     GGRSMASPAEVAQTADVCVSMLADGTAVRAVYGGPDGLVAGARPGNVLVDSSTVPPTA
                     IRQFEAATRRAGAGILDAPVSGSVGLARSGALTIMVGGEPADVELARPVLSAIASTIF
                     HLGPLGTGAAMKLAVNTVIFGVNQALAEALVLAEAAGIDRTAAYDVLAASAVRSPYMD
                     YKRAAFLEPESAPVAFALDLAAKDLRLITAFANELGLAMPQTAANLAFIEAASAGGRG
                     DRDFSKVADHLREQARTEEDATA"
     gene            complement(1240..>2273)
                     /locus_tag="VIU37_01490"
     CDS             complement(1240..>2273)
                     /locus_tag="VIU37_01490"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF006667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEY6012641.1"
                     /translation="SGPTAARPGGEARDAMPEMTYRAAVAAGIAQEMERDPSVVLIGE
                     DVGSAGGVFKLTEGLFDRFGAERVRDTPISEQAIVGAAMGAAMTGLRPVAELMFSDFF
                     AVTWDMVANQIAKTRYMTDGQVSLPLVLRTANGSGLRFGAQHSQSVENWAMAIPGLKV
                     VAPSTPADVVGLMAAAIRDPDPVVFCESKSLFATKGEVPDGEHVVPLGEAAVVRAGTD
                     CTIIALAAMVPRALQAAERLAADHGINAEVIDLRCLVPLDAKAILASVAKTSRLFTVE
                     ENPRLCGWGAEIVSLVADEAFYSLDAPLVRITTPHIPLPSAAALEDLAVPSAERIAET
                     VRLRLEQAK"
BASE COUNT          316 a          834 c          806 g          317 t
ORIGIN      
        1 gatggcgctg aagtaggtga tcagcgcgta gtccggcgca caggtccgga tcgacgtctc
       61 ccaggtgtgc cggtgcgtgt cgacgaagcc cgggatcacg atgtcgccgg tcgcgtcgat
      121 gaccttcgcg ccgtcggccg agatgccatg ccggacgtcc acgatccggt cgtcctcgac
      181 gaggatgtcg gcgcccgcca tctcgccgag ggacgggtcc tgcgtcagga cgatcccgcc
      241 cttgatcaat gttcgctcgc ccatctgtca ctcctatcag tcgaacttgc gatcacgcgt
      301 gccggaggcc gggccggtgg cccgcggggt tcgtctcagg cggttgcgtc ctcctctgtt
      361 cgggcctgct cccgaaggtg gtcggcgacc ttggagaaat cgcggtcgcc gcggccgccg
      421 gccgacgccg cctcgatgaa cgcgagattt gccgccgtct gcggcatggc caggccgagc
      481 tcgttcgcga acgcggtgat gagccgcagg tccttcgcgg caaggtccag cgcgaaggcg
      541 accggcgccg actcgggctc gaggaacgcc gcccgcttgt agtccatgta cggcgaccgg
      601 acggcgcttg ccgcgagcac gtcgtaggcg gcggtgcggt cgatcccggc cgcctcggcc
      661 aggaccagcg cctcggccag ggcctggttg accccgaaga tcacggtgtt cacggcgagc
      721 ttcatggcgg cgcccgtgcc aagcgggccg aggtggaaga tcgtagaagc gatggcgctc
      781 aacacgggtc gtgccagctc gacgtcggcc ggctcgccgc cgaccatgat cgtgagcgcg
      841 ccactgcggg ccaggccgac gctgcccgag accggggcgt cgaggatccc ggctcccgcg
      901 cgccgcgtcg cggcctcgaa ctggcggatg gccgtcgggg gaacggtcga cgaatcgacc
      961 aggacgttgc ccggtcgggc gccggccacc agcccgtccg gaccgccgta gacggccctc
     1021 acggcggtcc cgtcggccag catcgagacg cacacgtccg ccgtctgggc gacctcggcc
     1081 gggctggcca tcgatcggcc gcccagctcg gccgccagcg ccgccgccgg ttcgggcgtc
     1141 cggttccagc agacgacctc gaacccggcg gccgccagcg catgggccat cgagctgccc
     1201 atccgccccg tccccaggag gccgaccgcg gtcatgccgc tacttcgcct gctccagccg
     1261 cagccggacg gtctccgcga tccgctcggc cgaggggacc gcgagatcct cgagcgccgc
     1321 cgccgacggc agcgggatgt gcggcgtggt gatccggacc agcggggcgt cgaggctgta
     1381 gaacgcctca tcggcgacga gcgagacgat ctcggcgccc cagccgcaga ggcgcgggtt
     1441 ctcctccacc gtgaacagcc ggctcgtctt cgcgaccgag gcgaggatcg ccttcgcgtc
     1501 cagcgggacg aggcagcgca ggtcgatgac ctcggcgttg atgccgtggt ccgcggccag
     1561 ccgctcggcc gcctggagcg cccgcgggac catggccgcc agcgcgatga tcgtgcagtc
     1621 cgtccccgcc cggaccacgg cagcctcccc gagcggcacg acatgctcgc cgtcggggac
     1681 ctcgcccttg gtcgcgaaga gcgacttgct ctcgcagaag accaccggat ccgggtcgcg
     1741 gatcgcggcc gccatcagcc cgaccacgtc ggccggggtg gacggggcca ccaccttgag
     1801 ccccgggatc gccatcgccc agttctcgac gctctggctg tgctgcgcgc cgaagcggag
     1861 cccagagccg ttggcggtac gcaggaccag cggcagcgag acctgcccgt cggtcatgta
     1921 gcgggtcttg gcgatctggt tggcgaccat gtcccaggtc accgcgaaga agtcggagaa
     1981 catcagctcg gcgacgggac ggagccccgt catggcggcg cccatcgcgg cgccgacgat
     2041 cgcctgctcg ctgatgggcg tgtcgcggac gcgctcggcg ccgaaccggt cgaacagccc
     2101 ttcggtcagc ttgaacacgc cgccggccga gcccacgtcc tcgccgatca ggacgacgct
     2161 cgggtcgcgc tccatctcct gggcgatgcc cgccgcgacg gcggcgcggt aggtcatctc
     2221 gggcatggcg tcacgcgcct ccccgccagg ccgagccgcc gtcggcccag acc
//
LOCUS       DATDDI010000102         3233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_2219, whole genome shotgun sequence.
ACCESSION   DATDDI010000102 DATDDI010000000
VERSION     DATDDI010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3233
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2219"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..756
                     /locus_tag="VIU37_01495"
     CDS             <1..756
                     /locus_tag="VIU37_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012642.1"
                     /translation="TDMTKLKALGVAPLAIAGKDMWPSMHLWTYLVLRIGGSDALQQM
                     IQSGDWNTDACKAAGDAVLKLNELKPYQDGYKSATYDNEAAAVGNGKAAMELMGQWAP
                     GVQVADSTSKKGLGEDLGWFPFPAVTGGAGAATDGVGGGNGIAVGKNAPPEAIDFLKF
                     FSSVENANSLNSSTPPTALSPVIGTESTVTDPNLQAVLAGRNAATFIQLYLDQATSPA
                     MGTAINEATVALFLGQSTPEKVCQAITDAAATQ"
     gene            853..1797
                     /locus_tag="VIU37_01500"
     CDS             853..1797
                     /locus_tag="VIU37_01500"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEY6012643.1"
                     /translation="MTTTSAIGARRSGASARLRAKWLTIALFLLPALALYLVFVLFPI
                     VQAAHYSLFKWNGLQPLTDFIGLKNYQVALSNRAFTSAIGNNVLIVVLSLAIQIPFSL
                     SLAVLLNRRFPGRAIFRLIFFLPYVLSEAITGIVFSLMLRPEGIVDASLSGAGLGGVI
                     QDWLGDGSIVMLTLFVIISWKYFGFHMIILLAGLQGIPHELEEAALIDGAGRWQAFRH
                     ISLPLLGPTLRVSVFLSMIGALQLFDVIWVMTKGGPVGASNTMAIQMFKSGFTSQQMG
                     YGSALAVILFICALVLALAYQRFVLRRDVEGAITNFNG"
     gene            1847..2707
                     /locus_tag="VIU37_01505"
     CDS             1847..2707
                     /locus_tag="VIU37_01505"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEY6012644.1"
                     /translation="MTRQGTRPVRIGIAGFAGYVVLVLVAALILIPVAFAVLGGFKSN
                     GQLVGDPGSIIPSPWVLSNYTDVLFGPNSGVFWREVLNSLIVAVIAVTATVVPASLAA
                     FVFSRIAFRGREAIYTLFTLGLLFPAAVAILPLYILVRDLGLSGNFLGVALPEAAFGL
                     PLTIIILRPFFRSIPAELEDAARMDGCTTFGFFWRVLLPLARPALATVSVLAIVTTWN
                     AFLLPLILLNGEDQWTLPLGVMNFSGQYTSDQARILAFTVLAIVPAVLFYAVAERQIV
                     RGLTAGSVKG"
     gene            2707..>3233
                     /locus_tag="VIU37_01510"
     CDS             2707..>3233
                     /locus_tag="VIU37_01510"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6012645.1"
                     /translation="MTTIQAPYRDATLPLEQRVADLLARMTIEEKVAQLGSIWSFEIV
                     GIGTLNRDNARRLVGNGIGQVTRLAGATNLGACDVAALANEVQRFLVEETRLGIPAII
                     HEESLHGLVSRDAPSFQQSIGAAAAWDPGLVRRMAATLRRRMLATGARQSLAPVLDVT
                     RDPRWGRIEETYGEDP"
BASE COUNT          483 a         1152 c         1054 g          544 t
ORIGIN      
        1 accgacatga ccaagctcaa ggccctgggc gtcgccccgc tggccatcgc gggcaaggac
       61 atgtggccct cgatgcacct ctggacgtac ctggtcctcc gcatcggcgg gtcggatgcg
      121 ctccagcaga tgatccagtc cggtgactgg aataccgatg cctgcaaggc ggccggcgat
      181 gcggtcctga agctcaacga gctcaagccg taccaggatg gctacaagag cgccacctac
      241 gacaacgagg ccgctgcggt tggcaacggc aaggccgcca tggaactcat gggccagtgg
      301 gccccgggcg tccaggtcgc cgacagcacc agcaagaagg gcctcggcga ggacctcggc
      361 tggttcccgt tcccggcggt gaccggcggt gccggcgcgg ccacggacgg cgtgggcggc
      421 ggcaacggga tcgcggtcgg caagaacgcg ccgcccgagg cgatcgactt cctcaagttc
      481 ttcagcagcg tcgagaacgc caactcgctc aacagctcga cgccgccgac cgcgctgtcg
      541 ccggtcatcg gcaccgagag cacggtcacc gacccgaacc tgcaggccgt cctggccgga
      601 cggaatgcgg ccaccttcat ccagctctac ctcgaccagg cgacctcgcc ggccatgggc
      661 acggcgatca atgaggcgac cgttgcgctg ttcctcggcc agtcgacgcc cgaaaaggtc
      721 tgccaggcca tcacggacgc tgcggccacg cagtagcggc cggcgtcatc acgccctcgc
      781 cagcatggcg acaatgagcg ggccggctca cgccggcccg ctcgatttca cgcacgcagt
      841 cgaaggacgg acatgaccac gacgagcgcg atcggcgccc gacgctcggg agccagcgcc
      901 agactccggg ccaagtggtt gaccatcgcg ctcttcctgc tgcccgcgct cgccctgtac
      961 ctcgtgttcg tcctgttccc catcgtccag gccgcgcact acagcctctt caagtggaac
     1021 gggctgcagc cgctgacgga cttcatcggc ctcaagaact atcaggtcgc cctgagcaac
     1081 cgcgcattca cctcggcgat cggcaacaac gtcctgatcg tggtcctgtc gctggccatc
     1141 cagatcccgt tctcgctgtc gctcgcggtc ctgctcaacc ggcgcttccc gggcagggcc
     1201 atcttccggc tgatcttctt cctgccgtac gtgctgtccg aggccatcac cgggatcgtc
     1261 ttcagcctga tgctccggcc cgaggggatc gtcgacgcga gcctgtcggg ggccggtctc
     1321 gggggcgtca tccaggactg gctgggcgac ggctcgatcg tgatgctgac gctgttcgtc
     1381 atcatctcgt ggaagtactt cgggttccac atgatcatcc tgctggccgg gctccagggg
     1441 atcccccatg agctcgagga ggcggcactc atcgacggcg ccggccgctg gcaggcgttc
     1501 cgccacatct cgctgccgtt gctcggaccg acgctgcgcg tctcggtgtt cctgtcgatg
     1561 atcggtgccc tccagctgtt cgacgtgatc tgggtcatga ccaagggcgg accggtcggc
     1621 gcctcgaaca cgatggcgat ccagatgttc aagagcgggt tcacgagcca gcagatgggc
     1681 tatggcagcg ccctcgccgt gatcctcttc atctgcgcgc tggtcctcgc cctggcgtac
     1741 cagcgattcg tgctccgacg ggacgtcgag ggtgcgatca cgaacttcaa cgggtaaccc
     1801 gatggcgacg acgacgtcca gcgaaccgag tgtcacgacc gtggcggtga cgcgccaagg
     1861 gacccggccg gtccggatcg ggatcgccgg cttcgccggc tacgtggtcc tcgtcctcgt
     1921 cgcagccctg atcctgatcc cggtcgcctt cgccgtcctc ggcggcttca agtccaacgg
     1981 ccagctggtc ggcgacccgg gatcgatcat ccccagcccg tgggtcctgt cgaactacac
     2041 cgacgtcctg ttcggcccca acagcggggt gttctggcgg gaagtgctca acagcctgat
     2101 cgtcgcggtc atcgccgtca cggcgaccgt cgtgccggcg tcgctggccg cgttcgtctt
     2161 ctcgcggatc gccttccgcg gccgggaggc gatctacacc ctgttcaccc tcgggctcct
     2221 gttcccggca gcggtggcga tcctgcccct gtacatcctc gtccgcgacc tcggcctgtc
     2281 ggggaacttc ctcggcgtgg cgctgcccga ggcggcgttc gggctgccgc tcacgatcat
     2341 catcctgcgg cccttcttcc ggagcattcc ggccgagctc gaggacgccg cgcggatgga
     2401 cggctgcacc accttcgggt tcttctggcg ggtgctgctg ccgctcgcgc gaccggccct
     2461 cgccacggtc agcgtcctgg cgatcgtgac cacctggaac gcgttcctgc tgccgctgat
     2521 cctgctcaac ggcgaggacc agtggacgct gccgctcggg gtcatgaact tctccgggca
     2581 gtacacctcg gaccaggccc ggatcctcgc gttcacggtg ctcgccatcg tcccggcggt
     2641 gctcttctac gccgtcgcgg agcggcagat cgtccgcggg ctcacagccg gatcggtgaa
     2701 aggttgatga cgaccattca ggcaccctat cgcgatgcga ccctgccgct cgagcagcgc
     2761 gtcgccgacc tgctggcacg gatgacgatc gaggagaagg tcgcgcagct cggttcgatc
     2821 tggtcgttcg agatcgtcgg catcggcacc ctgaaccggg acaacgcccg gcgcctggtg
     2881 ggcaacggca tcggccaggt cacgcgcctc gccggcgcga cgaaccttgg cgcctgcgat
     2941 gtcgccgccc tggccaacga ggtccagcgg ttcctcgtcg aggagacgcg cctcggcatc
     3001 ccggcgatca tccacgagga atcgctccac ggcctggtgt cgcgcgacgc gccgagcttc
     3061 cagcagtcga tcggcgccgc ggcggcctgg gaccccgggc tggtccgacg gatggcggcg
     3121 accctgcgac ggcggatgct ggcgaccggc gcccgccagt cgctggcgcc cgtcctggac
     3181 gtgacgcgcg accctcgctg gggccggatc gaagagacgt acggcgagga tcc
//
LOCUS       DATDDI010000103         2509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_272772, whole genome shotgun sequence.
ACCESSION   DATDDI010000103 DATDDI010000000
VERSION     DATDDI010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272772"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..>2509
                     /locus_tag="VIU37_01515"
     CDS             275..>2509
                     /locus_tag="VIU37_01515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012646.1"
                     /translation="MRRRLSRPGAQPPLRRAPGRVSRRSWRLIALFGVVLGMLGPLAT
                     GAAAADLPTIEAHALLSGNARIGSWMAIQVHLVNDGPAVTGELRLAGGTQGQTRFGTA
                     VDLPTQSDKRYLLYVQPPAFGSELEVILADGDRKVVSTKVKFAIHDATQLMVAVVAEH
                     PDGIVANLGLLPNQNQVAPLVMSLTPEELPERVEAWSALDRVIWQDVDADRLSPAQLE
                     ALRGWVAGGGRLVIAGGTAGPKVLGAFPDTLLPYRPVTTTDVPAASLSGLLGDLPEDA
                     TTLPALSGELIDGRALATVGGRVVAAERAYGSGQVSLLGFDPTANWIVDSKAAQGLWR
                     RLLPARTSSGLSFADDSMLVSAVSQLPSLALPPVGGLIVLLAAYILLIGPVNYLILRR
                     LDRREWAWLTMPVLVVVFTVGAYGFGIALRGNDVIVNEVAIVRGAVGATDGTGQIYLG
                     VFSPSRGQYQLQVPGGALLSSPINGDVFGGTGAASQLDVLQGDPARVRNLDVGFGSLR
                     TIRAETAVTVPLVDTDLRLEDGRLRGTVKNDSAETLHDAVVVLGGTVAPLKDLAPGAV
                     ATVDVSIQNTQFGQSLSDKVVGQVFFPNGTTTNSSDLYARHSMVDQLTYDPMFGSTGM
                     LDNEGPVVLAWGSDDLLQVEVERQQPRRLGNVLYYLPARMAVHGTTTFRSSLIRSSVI
                     ATDAAFFNKDPFTISFGRGTATVAYRPTSFEGTLDVTEVAIGLNFGDTGIVVPATPVD
                     PLPSI"
BASE COUNT          348 a          892 c          891 g          378 t
ORIGIN      
        1 gcaggcgatc ccgcagcgcg ggcccgatga cgtcgtacgg cggggccacg acacaggccg
       61 gatcgccgat cgtcgtgacg ttgtatcgaa gcgccctgaa cgggcgaatc tcgggcacgg
      121 accccctcgg gatggcggca cgctggccgg cggctcacgg gaccccagca tcgtacgata
      181 gccgtcgatc gaacgcccac ggccgtgcaa ctttcgcctg gtccgaggcg tccatgctgc
      241 gaccaaaccc gacccgaccg tcagggggaa cctcgtgcgc cgtcgcctga gccgaccggg
      301 tgcccagccg ccgctgcggc gcgcgccggg ccgtgtctcg cggcgttcgt ggcggctcat
      361 cgcgctgttc ggcgtcgtgc tcgggatgct cgggccgctg gcgaccggcg cggccgcggc
      421 ggacctcccg acgatcgagg cgcacgcgct gctgtcgggc aacgcccgga tcggatcgtg
      481 gatggccatc caggtccacc tcgtcaatga cggaccggcg gtgaccggcg agctccgcct
      541 ggccggcggg acccagggcc agacgcggtt cggcacggcg gtcgacctcc ccacgcagtc
      601 cgacaagcgg tacctcctgt acgtccagcc gcccgcgttc ggcagcgagc tcgaggtgat
      661 cctggccgac ggcgaccgca aggtcgtcag caccaaggtc aagttcgcga tccacgacgc
      721 gacccagctg atggtcgccg tcgtcgccga gcatcccgac gggatcgtcg cgaacctcgg
      781 gctgttgccc aaccagaacc aggtcgcccc gctcgtgatg agcctgacgc ccgaggagct
      841 ccccgagcgc gtggaagcct ggagcgcact cgaccgggtg atctggcagg acgtcgacgc
      901 cgaccggctc agcccggcgc agctggaggc gctgcgcggc tgggtggcgg gtggcgggcg
      961 cctggtgatc gcgggcggga cggccgggcc gaaggtcctg ggcgccttcc cggacaccct
     1021 gcttccctat cggccggtga ccacgacgga cgtcccggcg gcgtccttga gcggcctcct
     1081 gggcgacctg ccggaagacg cgaccacgct gccagcgctc tccggcgagt tgatcgacgg
     1141 tcgcgcgctt gccaccgtcg gtggtcgggt cgtggccgcg gagcgggcct acggatccgg
     1201 ccaggtgagc ctgctcggct tcgatccgac ggcgaactgg atcgtcgact cgaaggcggc
     1261 ccagggactc tggcgccggc tcctgccggc gcggacgtcg agcgggctga gcttcgccga
     1321 cgattcgatg ctggtcagcg cggtctcgca gctcccgtcg ctggcgctgc cgccggtcgg
     1381 cgggctgatc gtcctgctgg ccgcctacat cctcctgatc gggccggtca actacctgat
     1441 cctgcgacgc ctggaccggc gcgagtgggc gtggctgacg atgccggtcc tggtcgtcgt
     1501 cttcaccgtc ggggcctatg ggttcggcat cgcgctgcgc gggaacgacg tgatcgtcaa
     1561 cgaggtcgcg atcgtgcgcg gcgcggtcgg cgccaccgac gggacgggcc agatctacct
     1621 gggcgtgttc tcgccgtcgc gcggccaata ccagctccag gtgccagggg gtgcgctgct
     1681 ttcgtcgccg atcaacggcg acgtgttcgg tgggaccggg gccgcgagcc agctcgacgt
     1741 gctccagggt gaccccgccc gcgttcgcaa cctcgacgtc gggttcgggt cgctgcggac
     1801 catccgtgcg gagaccgcgg tgacggttcc gctcgtggac accgacctgc gcctggagga
     1861 cggccgcctg cgcggcacgg tcaagaacga ctcggccgag accctccacg acgcggtcgt
     1921 ggtcctgggc ggcaccgtgg caccgctgaa ggacctggcg ccgggcgccg tcgccacggt
     1981 cgatgtctcg atccagaaca cccagttcgg ccagtcgctg tcggacaagg tggtcggcca
     2041 ggtcttcttc ccgaacggca cgaccaccaa ttcgagcgac ctctacgcgc gccactcgat
     2101 ggtcgaccag ctgacgtacg accccatgtt cggctcgacc gggatgctcg acaacgaggg
     2161 gccggtcgtg ctcgcgtggg gctcggatga cctgctccag gtggaggtcg agcgacagca
     2221 gccgaggcgg ctgggcaacg tgctctacta cctgccggcg cggatggccg tccacggcac
     2281 gacgaccttc cgatcgagcc tgatccgctc gagcgtgatc gcgacggatg ccgccttctt
     2341 caacaaggac ccgttcacga tcagcttcgg tcgtggcacg gccacggtcg cctaccggcc
     2401 gaccagcttc gagggcaccc tcgacgtgac cgaggtggcg atcgggctca acttcggcga
     2461 caccggcatc gtcgtcccgg cgactccggt cgacccactg ccgtcgatc
//
LOCUS       DATDDI010000104         3616 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_460033, whole genome shotgun sequence.
ACCESSION   DATDDI010000104 DATDDI010000000
VERSION     DATDDI010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3616
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460033"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..672)
                     /locus_tag="VIU37_01520"
     CDS             complement(<1..672)
                     /locus_tag="VIU37_01520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012647.1"
                     /translation="MPPGAIAAAAATLVAVAGLAILSGAVTDALLVDNLQQLGATAAL
                     VAIALPGRAGPISMRRLRVAVAAAAALTLGGQVVWYLGPGGSASPSPVADVLLVSAGC
                     VILAGISPGLFGGLPRATRVDVTLDAAIIFLAGTAIMAAFWQQQPGGVLAVEHLAAIL
                     MAMALVSASAAGFVGLLARRVPPGVYGPWAVIDGLFAVGVSWIVWYGTAHGGALVGVL
                     PTDFLL"
     gene            complement(944..2356)
                     /locus_tag="VIU37_01525"
     CDS             complement(944..2356)
                     /locus_tag="VIU37_01525"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEY6012648.1"
                     /translation="MPPESAGTVAGIVLAAGAGSRFGGGKLLAPLAGRPILQHVLDRL
                     AEAGIEDVTVVLGHDAPAIERAIDWRTERRVVNPSPDRGLSSSLQVGMAALPPETDAV
                     LIALGDQPLVTAATIRALLDAQPERSRPIVVPVYPDDRGRNPVLLRRPAFPLAGEASG
                     DRGLGPVLAAHPDAVHEVPASGDNPDVDTQADLASAAAAAWAARVRANREQVERVREV
                     PDGADFYAPVRSLFRADPTRTDDPILNALLGLVRSGDRWLDVGAGAGRFALPIARALD
                     PSGGSVVALDASPSMLEGLREIAEDYAIENIRTVEARWPPADPGAFDADVALIAHVGY
                     DVEAIGDFLEALESAAGRLCVAVLTQQPPAAAADPFWPAVHDEPRSALPALPELLELL
                     RARGREPSVVRIPGEPRRFESREALAGFVQRQLWIDPAGGKAARLQAALDGLAVADGE
                     GWTIRGRGPIETGVVTWPSR"
     gene            complement(2362..3486)
                     /locus_tag="VIU37_01530"
     CDS             complement(2362..3486)
                     /locus_tag="VIU37_01530"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC/CoxI family protein"
                     /protein_id="HEY6012649.1"
                     /translation="MKELLDTLDGWERDGVAVGRAVVIRTFGSAPRPEGAVLLYAKDG
                     RIAGSVSGGCVEGAAADEIQHAWSTGNARVIRYGISDEQAWDVGLACGGTIDVLVEPV
                     APAAVIEAARGSVGANGRGVAVVTPLPADSPPGTFGPHQPGAGGPPAAELVVAEDGHL
                     TGSLGSADLDEALVAAATEALRRGLSRTVELGGRSLFIEVFPVRPRLVMVGGVEVARS
                     LARLAHELGFETVVVDGRASFATPERFPDVDRLVVGWPDEVADEIGLGPNDAVAVLSH
                     DVKFDEPAIVEALRRGCRYVGAVGSRKTQADRRERLLAAGVAATDLARLRGPVGLDLG
                     GRAPAETALAILAEIVAERYGGSGAPMRERATAAMGDARA"
BASE COUNT          509 a         1393 c         1299 g          415 t
ORIGIN      
        1 taggaggaag tcggtcggca ggacgccgac gagggcgccg ccgtgcgcgg tcccgtacca
       61 gacgatccag gagacgccga cggcgaagag gccgtcgatg acggcccatg gaccgtagac
      121 acccggcggg acgcgcctcg cgaggagccc gacgaagccg gccgccgagg ccgataccag
      181 cgccatcgcc atcaggatcg ccgccaggtg ctcgaccgcc aacaccccgc ccggctgctg
      241 ctgccagaag gcggccatga tcgccgtgcc ggccaggaag atgatcgccg cgtcgagggt
      301 cacgtcgacg cgcgtcgccc ggggcaatcc cccgaacagg ccgggcgaga tccccgccag
      361 gatcacgcag ccggcgctga cgagcaggac gtccgccacc ggtgacgggg acgccgaccc
      421 acctgggccg aggtaccaga cgacctgccc gccgagcgtc agcgccgctg cggccgccac
      481 ggcgacgcgc agccgtcgca tcgagatcgg cccggcacgc ccggggagcg cgatcgcgac
      541 gagggcggcg gtcgctccga gctgctggag gttgtcgacg aggagcgcgt cggtgacggc
      601 accgctcagg atcgcgagcc cggcgacggc cacgagggtc gcggccgcgg cggcgatcgc
      661 accgggtggc acccggaccc gccgggcatg ggcgtcggac caggcctcca gcgcaacgga
      721 acgatcagtg cgggcgacgg cgtcgatggc gtgtggtcct ctgctcgtcc ccgggattcg
      781 gcctcgtcag gagcatcggt ccggtgaccg cccggcacga tggcccgatc gggttaccca
      841 ttggggggcc acaggtcctc tggaacgacg gtgagggctc catcgcgccg gtgccggccc
      901 tcggccgacg cggacatccg cgcccggcgc cgatcgtgac gcgtcagcgc gacggccagg
      961 tcaccacgcc ggtctcgatc ggcccgcgac cgcggatcgt ccagccctcg ccgtccgcga
     1021 cggccaggcc gtcgagcgcg gcctggagcc gggcggcctt gccaccggcc ggatcgatcc
     1081 agagctgccg ctggacgaac cccgcgaggg cctcgcgaga ctcgaagcga cgtggctccc
     1141 cggggatccg cacgacggac ggctcgcgcc ccctggcccg aagcagctcc agcagttcgg
     1201 gcaaggcggg cagggccgac cgcggctcgt cgtggacggc cggccagaac gggtcggcgg
     1261 cggcggccgg gggttgctgc gtcaggaccg ccacgcacag ccgtcctgcc gccgactcga
     1321 gcgcctcgag gaagtccccg atggcttcga cgtcgtagcc gacatgggcg atgagcgcga
     1381 cgtcggcgtc gaaggccccg gggtccgccg gcggccagcg agcctcgacg gtccggatgt
     1441 tctcgatcgc gtaatcctcg gcgatctcgc gcagtccctc gagcatcgac ggcgacgcat
     1501 cgagcgcaac cacggatcca cccgacggat cgagcgcccg ggcgatcggc agcgcgaagc
     1561 ggccggcccc ggcgccgacg tcgagccatc ggtcgccgga ccggaccagc ccgagcagcg
     1621 cattcaggat cgggtcgtcc gtccgcgtcg ggtcggcccg gaagagcgag cgaaccgggg
     1681 cgtagaagtc ggcgccgtcg gggacctccc ggacccgctc cacctgctcg cggttggccc
     1741 ggacgcgagc cgcccacgcc gccgccgcgg cgctggcgag gtcggcctgg gtgtccacgt
     1801 cgggattgtc gccgctggcc gggacctcgt gcacggcgtc cgggtgcgcc gccagcaccg
     1861 gcccgaggcc gcggtcgccg gaggcttcgc cggcgagcgg gaaggccggc cgccggagca
     1921 gcaccgggtt ccggccgcgg tcgtccgggt agacaggcac gacgatgggt ctcgacctct
     1981 ccggctgggc gtcgagcagc gcccggatgg tcgcggccgt caccagcggt tgatctccga
     2041 gggcgatcag gacggcatcg gtttcgggcg gcagggccgc catcccgacc tgcagcgagc
     2101 tcgacagacc acggtccggc gacgggttga cgacgcggcg ttcggttcgc cagtcgatcg
     2161 ctcgttcgat ggccggcgcg tcgtgcccca ggaccaccgt cacgtcctcg atcccggcct
     2221 cggccagccg gtccaggacg tgctggagga tcggccgccc ggcgagcggc gcgaggagct
     2281 tgccgccacc gaaccttgaa ccggcacccg ccgcgaggac gatgccggcg acggtccccg
     2341 cgctttcggg cggcaccgtc gtcaggctcg cgcgtcgccc atcgcggccg tggcccgctc
     2401 gcgcatcggc gcgccggacc cgccgtagcg ctcggccacg atctcggcca ggatcgccag
     2461 cgccgtctcg gccggcgccc ggccgcccag gtccagcccg accgggcccc ggagcctcgc
     2521 cagatcggtg gccgcgacgc ccgccgcgag cagccgctcc cgccggtcgg cctgcgtctt
     2581 gcgcgacccg accgcgccaa cgtaccggca gccgcggcgg agcgcctcga cgatcgccgg
     2641 ctcgtcgaac ttgacgtcgt gcgacagcac ggcgaccgcg tcgttgggac ccagtccaat
     2701 ctcgtcggcg acctcgtccg gccagccgac gacgagccgg tcgacgtcgg ggaaccgctc
     2761 cggtgtcgcg aacgaggcac ggccgtcgac gaccaccgtc tcgaagccga gctcatgggc
     2821 gagccgggcc agcgaccggg cgacctccac gccaccgacc atgaccagcc gcggccggac
     2881 cgggaagacc tcgatgaaca gcgagcggcc gccgagctcg accgtcctcg acagcccgcg
     2941 ccgcagcgcc tccgtggcgg cagcgacgag ggcctcgtcg aggtccgccg agccgagcga
     3001 gccggtcagg tgcccgtcct ccgcgaccac cagctcggcc gcgggcggtc caccggcgcc
     3061 cggctggtgc ggcccgaacg tcccgggcgg cgaatccgcg gggagcggcg tgacgaccgc
     3121 cacgccgcga ccgttcgccc cgaccgaccc acgggccgcc tcgatcacgg cggccggggc
     3181 gacgggctcc accaggacgt cgatcgtgcc gccgcaggcg agcccgacgt cccatgcctg
     3241 ctcgtcgctg atgccgtagc ggatcacgcg cgcgttgccg gtgctccagg cgtgctggat
     3301 ctcgtcggcc gccgccccct cgacgcagcc gccgctcacg gaaccggcga tgcggccgtc
     3361 tttcgcgtag agcagcacgg cgccctcggg acgcggcgcc gacccgaacg tccggatcac
     3421 cacggcacgg ccgactgcca cgccatcccg ctcccatcca tcgagcgtgt cgagcagttc
     3481 cttcatcgga gtggcctcgc tgttcgtgga tccacgggct cgtaaaaggc ttggctggct
     3541 tggccactcc cccaacccac atcttcccct ccctccctgt tccccctgcc tacacacaca
     3601 catgcacgta cacaca
//
LOCUS       DATDDI010000105         2288 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_85599, whole genome shotgun sequence.
ACCESSION   DATDDI010000105 DATDDI010000000
VERSION     DATDDI010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85599"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..750)
                     /locus_tag="VIU37_01535"
     CDS             complement(4..750)
                     /locus_tag="VIU37_01535"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6012650.1"
                     /translation="MSAMEYSGPDRRRGGADRKAAEEITRILVVDDHALFRMGIANIL
                     GQQPDFEIVAEAEDSRTAIDRALELSPNVILMDLSLAAPGGIETTSRIKRELPSTAII
                     VLAQTEDEDALFDAIKAGAAAFILKDVSPDDLVTIIRRVVAGEYLINDKVFSKPAVAS
                     RVLKEFRELAVYGQEAAPIFAPLSPREVEILDNIAQGMTNKQVAYTLSISEQTVKNHM
                     SSILRKLSVNDRTQAVVYAMKQGWIRIPED"
     gene            complement(747..1895)
                     /locus_tag="VIU37_01540"
     CDS             complement(747..1895)
                     /locus_tag="VIU37_01540"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY6012651.1"
                     /translation="MKADPYTPKPMEPARAGPDGWDSRFDGLQAEATAAVGYSANTLS
                     SVRERYREAYTQALAQWQALRDQLEQVEREPRDTRLRVAPEGDDQAAAVAAEAGAEDA
                     RRRGLRSDVDHLTVDLGAHQAELAKIELAWQTLERTWLFLQGGDATLVSEANGPATAA
                     DLNMRIMEAQEAERSRLGQEIHDGPAQALSNAIFQVDYIERVLDTDLTLAYAELGLLR
                     ELLRRELGDVRAFITQLRPPMLDEIGLDGAISQAAENVRAMAGLTVTTAFGAPSDVLT
                     DGQRTVALRVAQEALQNVRKHAGANWVAVATLVEDGEWVLEVRDDGRGFDIGAVAARG
                     RRNFGLQFMRERAELIGARLDVRSRPEGGTVVRLAIPMAASTGAEDSR"
     gene            complement(1892..>2288)
                     /locus_tag="VIU37_01545"
     CDS             complement(1892..>2288)
                     /locus_tag="VIU37_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012652.1"
                     /translation="SVALLPVYGSQSVTTERLYGELGARMAAIGHPLDKSAGPVISNF
                     PIWLAETQRIPTLGLPNEPPADILDLAHHFAGTSLLVLIDPQGSHWPADLANGSPDAG
                     CFRELDLGPGPAGEPDPLATTRVFEIVCP"
BASE COUNT          304 a          785 c          835 g          364 t
ORIGIN      
        1 agatcagtcc tcggggatgc ggatccagcc ctgcttcatg gcgtagacga cggcctgcgt
       61 gcggtcgttg acggacaact tgcgcaggat gctcgacatg tggttcttga cggtctgctc
      121 gctgatcgag agggtgtagg cgacctgctt gttggtcatg ccctgggcaa tgttgtcgag
      181 gatctcgacc tcgcgcgggg agagcggggc gaagatcggg gccgcctcct ggccgtacac
      241 ggccagctcg cggaactcct tgaggacgcg cgaggcgacg gccggcttgg agaagacctt
      301 gtcgttgatg aggtactccc cggcgacgac gcggcggatg atcgtgacca ggtcgtccgg
      361 cgagacgtcc ttgaggatga acgcggcggc gccggccttg atcgcgtcga acagcgcgtc
      421 ctcgtcctcg gtctgggcga gcacgatgat cgcggtggac ggcagctcgc gcttgatccg
      481 cgacgtggtc tcgatgccgc ccggcgccgc cagcgacagg tccatcagga tgacgttggg
      541 cgacagctcc agggcccggt cgatggcggt ccgcgaatcc tcggcctcgg cgacgatctc
      601 gaagtcgggc tgctggccga ggatgttggc gatccccatc cggaacagcg cgtgatcgtc
      661 gacgacgagg atccgcgtga tctcctcggc ggccttccgg tcggccccgc cgcgccggcg
      721 gtcaggcccg ctgtactcca tggcgctcat ctgctgtcct ccgctcccgt cgaggctgcc
      781 atcgggatcg ccaaccggac gacggtgccg ccctccggtc tcgatcgtac gtccaatcgc
      841 gcgccgatca actcggcacg ctcgcgcatg aattgcaggc cgaagttccg ccggccgcgg
      901 gcggcgacgg cgccgatgtc gaagccacgg ccgtcgtcgc ggacctccag gacccattcg
      961 ccgtcctcga ccagcgtggc caccgcgacc cagttggcgc cggcgtgctt gcgcacgttc
     1021 tggagggcct cctgggcgac gcgcagggcg accgtccgct ggccgtcggt gaggacgtcg
     1081 gacggcgcgc cgaacgcggt cgtcacggtc agcccggcca tcgcccggac gttctccgcg
     1141 gcctggctga tcgccccgtc caggccgatc tcgtcgagca tcggcgggcg cagctgggtg
     1201 atgaacgccc ggacgtcgcc gagctcgcgc cggagcagct cacgcaggag cccgagctcg
     1261 gcgtaggcga gcgtcaggtc ggtgtccagg acccgctcga tgtagtcgac ctggaagatc
     1321 gcgttgctga gcgcctgggc gggcccgtcg tggatctcct ggccgagccg ggatcgctcc
     1381 gcctcctggg cctccatgat ccgcatgttc aggtcggccg cggtggccgg cccgttcgcc
     1441 tcgctgacga gggtcgcgtc gccgccctgc aggaagagcc aggtccgctc cagcgtctgc
     1501 caggccagct cgatcttggc cagctcggcc tggtgcgcgc cgaggtccac ggtgaggtgg
     1561 tcgacgtcgc tccgcaggcc gcgccgccgg gcgtcctccg cgccggcctc ggcggcgacc
     1621 gccgcggcct ggtcgtcgcc ctcgggggcg acccgcaacc gggtgtcgcg cggctcgcgc
     1681 tccacctgct cgagctggtc gcgcagggcc tgccactggg ccagggcctg ggtgtaggcc
     1741 tcgcgatagc gctcgcggac actgctgagc gtgttcgcgc tgtacccgac ggccgcggtg
     1801 gcctccgcct ggaggccgtc gaatcggctg tcccaaccat ccggaccggc gcgtgcaggc
     1861 tccatcggct ttggagtata cgggtcggcc ttcacgggca gacgatctcg aagacgcgcg
     1921 tggtcgccag cggatccggc tcgccggcag gcccggggcc caggtcgagc tcgcggaagc
     1981 agccggcatc cggcgatccg ttggccagat ccgccggcca gtgcgagccc tgcggatcga
     2041 tcaggacgag gagcgaggtc ccggcgaagt ggtgggcgag atcgaggatg tccgcgggcg
     2101 gctcattggg caggccgagc gtcgggatcc gctgtgtctc ggccagccag atcgggaagt
     2161 tgctgatgac ggggccggcg ctcttgtcca aggggtgccc gatggcggcc atgcgcgccc
     2221 cgagctcccc atacaggcgt tcggtggtga ccgactgcga cccgtagacc ggcagcaacg
     2281 cgaccgag
//
LOCUS       DATDDI010000106         1526 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_626747, whole genome shotgun sequence.
ACCESSION   DATDDI010000106 DATDDI010000000
VERSION     DATDDI010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626747"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /locus_tag="VIU37_01550"
     CDS             complement(<1..473)
                     /locus_tag="VIU37_01550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012653.1"
                     /translation="MAPEPRPARASKPSAAEAAPAHFETIDDLDALLAALPPEIVAAV
                     RRLPDQEGVIEVVMDLGRRPEARFPDGEVTLLDREITDADLSWVVDHIGTFGDDNRAG
                     IERTLHRISAIRNRSGKIVGLTCRIGRAVYGTIEIIADFVESGKSILIMGRPGIG"
     gene            complement(463..>1526)
                     /locus_tag="VIU37_01555"
     CDS             complement(463..>1526)
                     /locus_tag="VIU37_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012654.1"
                     /translation="GGKVRAARLTDLAALGELSRLSQTTDANARTLGLPVNGPPIGMF
                     SLFRLPLVAFRPHDLLYVYEADRHVAGLVRAERENWRDDWTIVELDAIGPAARNGPGE
                     IRYRLVQQILREGQRRGATRFHVACSDEDDNVELFMQAGFARYGEERVMYRPPDEDLP
                     TPWSDEVAGEARIREARPIDATALHQLYAAVTPVPVQRLEGFRIPDWERQGGNWRVPR
                     SSMAPILRFADIEGYVQDSTAPGRLDGLVQVGVAQEDQPHYLRVLARPEMDASDLIAF
                     GLGAIAGGAARAGARRANHGVIAPVRTYESPLDRRLEEAGFGEIAVVTLLLKETLARV
                     ADPALVPAVARPWEVTRGS"
BASE COUNT          211 a          544 c          557 g          214 t
ORIGIN      
        1 ttgccgatgc cggggcgacc catgatgagg atcgacttcc cgctctcgac gaagtcggcg
       61 atgatctcga tcgtcccgta gaccgcccgt ccgatgcggc acgtcaggcc gacgatcttg
      121 ccgctgcggt tgcggatggc gctgatccgg tggagcgtcc gctcgatccc ggcgcggttg
      181 tcgtcaccga aggtcccgat gtggtccacg acccagctca ggtcggcatc ggtgatctcg
      241 cgatcgagga gggtcacctc gccgtccggg aagcgcgcct ccggccggcg gccgaggtcc
      301 atcaccacct cgatgacgcc ttcctggtca ggcaggcgcc ggacggcggc gacgatctcg
      361 ggcggcagcg ctgccagcag cgcatcgaga tcgtcgatgg tctcgaagtg cgcgggcgcg
      421 gcctcggcgg cggagggctt ggaggcacgg gccggacggg gctcaggagc cacgggtgac
      481 ctcccacggt cgggcgacgg cagggacgag cgcggggtcg gcgacgcggg caagggtctc
      541 cttgagcagc agggtgacca cggcgatctc gccgaacccg gcctcctcga gacggcggtc
      601 gagcggcgat tcataggttc gcacgggagc gatcacgccg tgattcgcgc ggcgcgcccc
      661 ggcccgggcc gcgccgccgg cgatcgcccc cagcccgaag gcgatgaggt cggacgcatc
      721 catctcgggc cgtgcgagga cccggaggta gtgcggctgg tcctcctgcg ccacccccac
      781 ctggacgagc ccgtcgagcc gtcccggtgc ggtcgagtcc tggacgtagc cctcgatgtc
      841 ggcgaaccgg aggatcgggg ccatcgagct ccgcggcact cgccagttgc cgccctggcg
      901 ctcccagtcc gggattcgaa agccctccag ccgctggacc gggaccggcg tgaccgcggc
      961 gtagagctgg tggagcgccg tggcatcgat cggccgcgcc tcgcggatcc gcgcctcgcc
     1021 ggcgacctcg tcggaccacg gcgtgggcag gtcctcgtcc ggtgggcggt acatcacccg
     1081 ctcctcgccg taccgagcga agccggcctg catgaacagc tcgacgttgt cgtcctcatc
     1141 cgagcaggcg acgtggaagc gcgtcgcgcc gcggcgctgg ccctcgcgga ggatctgctg
     1201 gacgaggcga tagcgaatct cgccggggcc gttgcgtgcg gccggcccga tcgcatccag
     1261 ctcgacgatc gtccagtcgt cgcgccagtt ctcgcgctcc gcccgcacga ggccggccac
     1321 gtgccggtca gcctcgtaga catacagcag gtcgtgcggc cggaacgcga cgagcggcag
     1381 ccggaacagg ctgaacatcc cgatcggcgg gccgttcacc ggcagcccga gggtccgggc
     1441 attggcgtcg gtggtctgcg acagccgcga cagctcgccc agcgctgcca ggtccgtcag
     1501 ccgcgcggcg cggaccttcc cgcccg
//
LOCUS       DATDDI010000107         2013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_314529, whole genome shotgun sequence.
ACCESSION   DATDDI010000107 DATDDI010000000
VERSION     DATDDI010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314529"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1777)
                     /locus_tag="VIU37_01560"
     CDS             complement(<1..1777)
                     /locus_tag="VIU37_01560"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEY6012655.1"
                     /translation="MAVDNGAWDGAAVMSAGAASDDPAAFYRAVCAGRREGDPALQSS
                     WALPHHTAPGEGPNAAGCRNAMSRFPQTEGLTNEAAARSHLEAHMAEIRDAMMGGRSD
                     ESFSLEVDGPVEVRNALEREVDARIVPWDFAIDTVQGREQFARGAFDEATPDDIFLMG
                     LEHEAHIGLGQDMRPVLTRHPMGKAIALRNEADGQHATFRVAKTASGDEFLALAADGI
                     VRGVSVEFGELPGGTVTRTVGGRRTRVHQRSRLLAVSPTYRPAYPGAQILAVRSEDET
                     EQEQSPVAETTPEVAVAAAPAIDLSPITSSLASIQARMDERFAALEEKSRANFTIPAQ
                     PAIETPKPDRGDWMQAVLKMLSGERIPDAQMRTIEDLVTSDNIGVVPPTYSSEIIGVI
                     NRRRPFMETTRRLGTPSSGMSLVVPRIVTRPTVAQQMTEKAELDSTATEIDTVTFDAV
                     TKGGAGDISLQLLKRSSPSFLSLYLDLLAEAYAIESEVEAVAALLASGSGSNVVNDAG
                     TFDVDNPAFGDAWANGYLAMYGGPDTLWLSSAAVSAFLDAKANTSNLPLYGNLQASFT
                     VPGGVGGNVYGLRPVHVPALNSTGVD"
BASE COUNT          276 a          666 c          774 g          297 t
ORIGIN      
        1 cgtcgacgcc ggtcgagttg agggccggga cgtggaccgg gcgcaggccg tagacgttgc
       61 cgccgacgcc gcccgggacc gtgaaggacg cctgaaggtt gccgtacagc ggcaggttcg
      121 acgtgttcgc cttcgcgtcg aggaacgccg agacggcggc cgaggacagc cacagggtgt
      181 ccggcccgcc gtacatcgcg aggtagccgt tcgcccaggc gtcgccgaag gcggggttgt
      241 cgacgtcgaa cgtgcccgcg tcgttgacga cgttggagcc ggagcccgac gcgagcagcg
      301 ccgcgacggc ctcgacctcg gactcgatcg cgtacgcctc ggccaggagg tcgaggtaga
      361 gcgacaggaa cgagggcgag gagcgcttga gcagctggag gctgatgtcg cccgcgccgc
      421 ccttcgtcac ggcgtcgaac gtcaccgtat cgatctcggt cgcggtcgag tcgagctcgg
      481 ccttctcggt catctgctgc gcgacggtcg gccgggtcac gatgcgcggc acgacgaggc
      541 tcatgcccga ggacggggtg ccgaggcgcc gggtcgtctc catgaacggc cggcggcggt
      601 tgatgacgcc gatgatctcc gacgagtacg tcggcgggac gacgccgatg ttgtcggacg
      661 tgacgaggtc ctcgatcgtc cgcatctggg cgtcggggat ccgctcgccg gacagcatct
      721 tgaggaccgc ctgcatccag tcgccgcggt ccggcttcgg ggtctcgatg gcgggctgcg
      781 ccgggatggt gaagttcgcg cggctcttct cctcgagggc cgcgaaccgc tcgtccatgc
      841 gcgcctggat cgacgcgagc gacgaggtga tcggcgaaag gtcgatggca ggggccgcgg
      901 cgaccgcgac ctccggggtg gtctcggcca cggggctctg ctcctgttct gtttcgtctt
      961 ccgaacggac cgcgaggatc tgggcgcccg gatacgccgg gcggtaggtg ggggaaacgg
     1021 cgagcagccg cgagcgctgg tggacgcgcg tgcggcgccc gccgacggtc cgggtgaccg
     1081 tgccgccggg cagctcgccg aactcgaccg agacgccgcg gacgatgccg tcggccgcga
     1141 gggcgaggaa ctcgtcgccg gaggccgtct tcgcgacgcg gaaggtcgcg tgctggccgt
     1201 cggcctcgtt gcggagcgcg atggccttgc ccatcgggtg ccgcgtcagg acggggcgca
     1261 tgtcctggcc gagcccgatg tgcgcttcgt gctcgaggcc catcaggaag atgtcgtcgg
     1321 gggtcgcctc gtcgaacgcg ccgcgggcga actgctcgcg gccctggacg gtgtcgatgg
     1381 cgaagtccca cgggacgatc cgcgcgtcga cctcgcgctc gagcgcgttg cggacctcga
     1441 ccgggccatc gacctcgagc gagaacgact cgtccgagcg gccgcccatc atcgcgtcgc
     1501 ggatctcggc catatgggct tcgaggtgcg agcgggcggc ggcctcgttc gtcagcccct
     1561 cggtctgcgg gaagcgcgac atcgcgttcc ggcagccggc ggcgttcggc ccctcgccgg
     1621 gcgcggtgtg atgcgggagt gcccaggagg actggagagc cgggtcgccc tcgcggcggc
     1681 cggcacagac ggcgcggtag aaggctgcgg ggtcgtcgga ggccgcgcct gcggacatga
     1741 ccgccgcgcc atcccatgcc ccgttgtcga ctgccatgag aaagacctct caacggcacg
     1801 cttcggggca cgtgcgtgag aggccacgga gtccgggctg agcgcgaagg ctccggccgg
     1861 cggctcttcg gttagcgcga cgctaatacg caacttatgc gcgcgtcaag tcgccatata
     1921 gccctttcag acggtccacc acggcggcgg gcgcgtggta gcgccaggcg tgctcgcagc
     1981 cgcggcggcc ccattcggcc cggacggccg ggt
//
LOCUS       DATDDI010000108         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_168899, whole genome shotgun sequence.
ACCESSION   DATDDI010000108 DATDDI010000000
VERSION     DATDDI010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168899"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2021)
                     /locus_tag="VIU37_01565"
     CDS             complement(<1..>2021)
                     /locus_tag="VIU37_01565"
                     /inference="COORDINATES: protein motif:HMM:NF013784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HEY6012656.1"
                     /translation="RIATEITLLAVGGADGVAPGDIDARLARYRSALARPSADHAVPR
                     DELRIRRARAPLALSEVEDASSIVRRFVVSAMSVGALSPEAHQALTIGIQRAGGSANT
                     GEGGEDPAWYTPGPDGRRHDARIKQVASARFGVTAAYLARADQLEIKIAQGSKPGEGG
                     QLPGRKATAYIAALRRGQPGQSYISPPPHHDIYSIEDLAQLIADLRAINPRARIGVKL
                     VAGRGVGTIAAGVAKAGASYIHLSGHSGGTGASPLSSIKHVGAPWELGLAEVHQVLLR
                     NDLRDRVALRTDGGLQTGRDLLIAALIGAEEFAFGTAALIAVGCDMARQCHLDTCPTG
                     IATQREDLRAKFTGTPDAVARFFTAIAEDLRRELAAVGARTVGELVGESRRLLVPLPE
                     ARAELAPVIGAGRWGADTARRANPAGAGRDVRREAASPLEAAISAAFRGQGSVTAAGL
                     RLSTADRSFGAGLTGALERGELHGPVRLELQGAAGQSFGAFAGLGIDLRLTGQANDYV
                     AKGLSGGRITVTPEAELGAAAATEAIAGNTVLYGATAGRLHLVGRAGMRFAIRNSGAE
                     AVVEGIGPHGCEYMTGGTVVVLGPIGANFGAGMTGGRAFLYDPSGRHVAALDVRSVAA
                     VRLGAAMADRPDGPARMDDLVRLLEGQRAAGSQLAEGLLRDADLGASFWL"
BASE COUNT          246 a          761 c          771 g          243 t
ORIGIN      
        1 agccagaacg acgccccgag atccgcatcc cggagcaacc cctcggccag ctgcgaaccg
       61 gcggcccgct ggccttcgag caggcggacc aggtcgtcca tgcgcgcggg cccgtcgggt
      121 cgatcggcca tcgcggcgcc gagtcgaacg gccgcgacgc tccgcacgtc gagcgcggcc
      181 acgtggcggc cgctcgggtc gtacaggaag gcccggccgc cggtcatccc ggcgccgaag
      241 tttgccccga tcgggccgag gacgacgacc gtgccgccgg tcatgtactc gcagccgtgg
      301 gggccgatcc cctcgacgac cgcctcggcg ccgctgttgc ggatcgcgaa gcgcatcccg
      361 gcccggccga ccaggtggag ccggccggcg gtcgcgccat agagcacggt gttccccgcg
      421 atcgcctcgg tcgccgcggc tgcgccgagc tcggcctccg gggtgacggt gatccgcccg
      481 ccggacaggc ccttggccac gtagtcgttg gcctggccgg tcagccgcag gtcgatgccg
      541 agaccggcga acgcaccgaa cgactggccg gcggcaccct ggagctcgag ccggaccggg
      601 ccgtggagct cgccacgctc gagcgcgccg gtcagccccg ccccgaacga gcgatcggcg
      661 gtcgacagcc gcaggccggc cgcggtcacc gacccctgtc cgcggaaggc ggccgagatc
      721 gccgcctcga gcggcgacgc ggcctctcgc cggacgtccc ggccggcgcc ggccgggttg
      781 gcccggcggg ccgtgtccgc accccaccgg ccggccccga tcaccggggc cagctcggcc
      841 cgggcctcgg gcaggggcac cagcagccgc cggctctcgc cgacgagctc gccgacggtc
      901 cgggcgccga ccgccgccag ctcgcggcgc aggtcctcgg cgatcgcggt gaagaagcgg
      961 gcgaccgcgt ccggcgtccc ggtgaacttg gcccgcaggt cctcgcgttg cgtggcgatc
     1021 ccggtcgggc aggtgtcgag gtggcactgc cgggccatgt cgcagccgac cgcgatgagc
     1081 gccgccgtcc cgaacgcgaa ctcctcggcg ccgatcaggg ccgcgatgag gaggtcgcgc
     1141 ccggtctgca ggccgccgtc cgtgcggagc gccacccggt cgcgcaggtc gttgcggagc
     1201 aggacctggt ggacctcggc gagaccgagc tcccatggcg cgccgacgtg cttgatcgac
     1261 gacagcggcg acgcgccggt cccgccggag tggccggaca ggtggatgta cgaggcaccg
     1321 gccttggcca cgcccgcggc gatcgttccg accccgcgcc cggcgaccag cttgaccccg
     1381 atccgggccc gcgggttgat cgcgcgcagg tcggcgatga gctgggcgag atcctcgatg
     1441 gagtagatgt cgtggtgcgg cggcgggctg atgtagctct gacccggctg gccgcgacgg
     1501 agggcggcga tgtaggcggt cgccttgcgg ccgggcagct ggccgccctc gccgggcttt
     1561 gacccctggg cgatcttgat ctcgagctgg tcggcgcggg cgaggtaggc cgccgtcacc
     1621 ccgaaccgcg ccgaggcgac ctgcttgatg cgggcgtcgt ggcgccgtcc gtccgggccc
     1681 ggcgtatacc aggccggatc ctcgccgccc tcgccggtat tggccgaccc gccggcccgc
     1741 tggatcccga tggtcagcgc ctggtgcgcc tccgggctga gtgccccgac gctcatcgcg
     1801 gacaccacga accggcggac gatcgacgag gcgtcctcga cctcggacag cgccagcggg
     1861 gctcgcgcgc ggcggatgcg cagctcgtcg cgcgggaccg cgtgatcggc gctcggacga
     1921 gccagcgcgg accggtagcg ggccagccgg gcgtcgatgt cgccgggtgc gacgccgtcg
     1981 gcgccgccga cggcgaggag cgtgatctcg gtggcgatcc g
//
LOCUS       DATDDI010000109         1774 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_647537, whole genome shotgun sequence.
ACCESSION   DATDDI010000109 DATDDI010000000
VERSION     DATDDI010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_647537"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..1278)
                     /locus_tag="VIU37_01570"
     CDS             complement(73..1278)
                     /locus_tag="VIU37_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012657.1"
                     /translation="MHDDVEARVRSVLRKEGDDLTLNITAQELERRLAVRRRMRAGRR
                     MRLVAAGIAVVAIGGIVIAGNGGFGTRPVVGGRPSANATMAGPSASLAPSPPEATSPG
                     PAASNDDGQLPCDALDPSQASGPPPLVAAAMPGDAIGHGGTVVASEWAGRVSGTSGSW
                     DGLPGDPDPVVIGRTNEVFEAVSDGCFVQVTAEALLTVYAEVPKPSPTPVPLAIVRGG
                     VNSRVVDIAPPGVGGWTVRVRASFLTTDGSAAWSESLFRVLVPFQAPMLTMSLAGASG
                     GISVDGNCPSFHLASGASAADQCGGPYEPITGIDPLMIPRGSSVVLVLADGWQLEQVK
                     VTAVDADLVAAGRNAPEYSMAFEDKGGPKVTTAVVLDPGSWIVRGSLNGSRGEESFGA
                     WYDLPVVVR"
     gene            complement(1271..>1774)
                     /locus_tag="VIU37_01575"
     CDS             complement(1271..>1774)
                     /locus_tag="VIU37_01575"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6012658.1"
                     /translation="STLADLLEAYGRELQAVAYLILRDRGEAEDVVIETLLTAFERGG
                     DIRDERALRAWLLRVATNHALGRRRKTARLVRLDLSAEAAGPGDLASESSTRVALLDG
                     IDRLPAQIRAALILRYYADLPVEEVAAALGKSPNTIKAQLQTALDRLRVHLGEPVGAG
                     LGEARRA"
BASE COUNT          255 a          657 c          625 g          237 t
ORIGIN      
        1 accctggtgt tccgggcgcg ctgcggatca cgggtcacag gccgcggcgc agtccccggg
       61 gtcgccctgg ccctacctca cgaccaccgg caggtcgtac cacgccccga acgactcctc
      121 acctcggctg ccgttcaggc tcccccggac gatccacgat cccgggtcga ggaccaccgc
      181 cgtcgtcacc ttgggcccgc ccttgtcctc gaacgccatc gagtactcgg gggcgttcct
      241 gccggccgcg acgagatcgg catcgaccgc cgtgaccttg acctgctcga gctgccatcc
      301 atcggcgagc accaggacca ccgacgatcc tcgagggatc atcagcggat cgattcccgt
      361 gatcggctcg tagggaccgc cgcactgatc cgccgcgctg gctccgctgg cgaggtggaa
      421 gctcgggcag ttgccatcga ccgagatccc gccggacgcc cccgcgaggg acatcgtcag
      481 catcggcgcc tggaacggca ccaggacgcg gaagagcgac tccgaccagg cggcgctgcc
      541 gtccgtggtc aggaagctcg cccggacgcg gacggtccag ccgccgacgc cgggcggggc
      601 gatgtcgacg acgcggctgt tgacgccgcc gcgaacgatc gccaagggaa ccggggtcgg
      661 gctcggcttc ggcacctcgg cgtagaccgt cagcagtgcc tcggcggtga cctgcacgaa
      721 gcagccgtcg gagaccgcct cgaagacctc gttcgtgcgg ccgatcacga ccgggtcggg
      781 atcgcccggc aggccgtccc aactcccgga tgtcccggac acgcgacccg cccattcgga
      841 tgcgaccacg gtcccgccgt gaccgatcgc gtcgcccggc atggcggcgg ccacgagcgg
      901 gggcggaccg gacgcctggc tcggatcgag cgcgtcgcag ggcagttggc catcgtcgtt
      961 cgacgccgcc gggcccgggc tggtggcctc gggtgggctt ggcgccaggc tggccgacgg
     1021 cccggccatc gtggcattgg ccgacggccg tccgccgacg acaggcctgg tcccgaaccc
     1081 gccattgccg gcgatgacga tcccgccgat cgcgacgacc gcgatacccg cggcgaccag
     1141 gcgcatccgc cggccggccc gcattcggcg acggaccgcg aggcgccgct ccagctcctg
     1201 ggccgtgatg ttcagggtca ggtcgtcgcc ctccttgcgc aggacggatc ggacgcgagc
     1261 ttcgacgtcg tcatgcacgg cgggcctccc cgaggcccgc cccgaccggc tcgccaaggt
     1321 ggacgcgaag gcgatcgagt gcggtctgga gctgggcctt gatggtgttc gggctcttgc
     1381 cgagcgccgc cgcgacctcc tccacgggga gatccgcgta gtaacggagg atcagcgcgg
     1441 ctcggatctg tgccgggagg cgatcgatgc cgtcgaggag cgccacgcgt gtcgacgact
     1501 ccgaggccag gtcgccgggt ccggcggcct cggcggagag atcgagacgg accaggcgcg
     1561 ccgtcttgcg ccgccgaccg agggcgtggt tggtcgcgac ccgcagcagc cacgcgcgca
     1621 gcgcccgctc gtcacggatg tcgccgccgc gctcgaacgc ggtcagcagc gtctcgatca
     1681 cgacgtcctc cgcctcgccc cggtcgcgaa ggatgagata ggcgactgcc tgcagctcac
     1741 ggccatacgc ctccagcaga tcggcgagcg tcga
//
LOCUS       DATDDI010000110         3359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_252227, whole genome shotgun sequence.
ACCESSION   DATDDI010000110 DATDDI010000000
VERSION     DATDDI010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252227"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VIU37_01580"
     CDS             <1..184
                     /locus_tag="VIU37_01580"
                     /inference="COORDINATES: protein motif:HMM:NF022681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HEY6012659.1"
                     /translation="IERIAAGDPAAGPIAGLGRAERFHWLVAPASTIIQASEVHTGLC
                     QDPAAELEHLVATLVA"
     gene            complement(197..784)
                     /locus_tag="VIU37_01585"
     CDS             complement(197..784)
                     /locus_tag="VIU37_01585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012660.1"
                     /translation="MAEPADRNQRTTGRPRRTPRFVLPDDRHDERTAARIEAFLDGTS
                     TRRSSRQLAIDDRDRPRRPHSLDTRPDWNAALLHESSRHARYGRPVSVLLIDLAGSGD
                     ADSLERAARGLADVLRAEIRETDRAARVGPASYRVLLAETSARAAKQVASRLDRTFRD
                     ERPGVPPTRLRIEIVAPARGESLEDALSTAERRLA"
     gene            complement(883..1449)
                     /locus_tag="VIU37_01590"
     CDS             complement(883..1449)
                     /locus_tag="VIU37_01590"
                     /inference="COORDINATES: protein motif:HMM:TIGR03252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HhH-GPD-type base excision DNA repair protein"
                     /protein_id="HEY6012661.1"
                     /translation="MTTPTSLPFTGDEAADRLLVEEPLALLIGFALDQQVTVQKAFSG
                     PADLKRRLGHLDAARIAAMDPAALDAVFRERPALHRFPGSMAGKVQALCAAIAADYGN
                     DAARVWTAAADGPSLEARLLGLPGIGEMKAKSIIAVLGNRFGIRPPGYELVAPTWPTL
                     GDVDSPEALAAYQAGKRAHKAALRAAGR"
     gene            complement(1488..2795)
                     /locus_tag="VIU37_01595"
     CDS             complement(1488..2795)
                     /locus_tag="VIU37_01595"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012662.1"
                     /translation="MSESVQPVAPVSRLGRLVQLPLLVPLRSRDYRLVWFGESVSLLG
                     DQFHYVALSWLVLGLTGSGLALGTVLLAASLPRGALLLFGGVLADRVSPRTVMLVSNV
                     IRAMITTVIAALVFGSQIQLWQLVVAGVLFGTVDAVFYPAISTIVARLVPTEQLSSAN
                     ALLQGTQQLMTTVGPALAGIAVAVIGIGAAFAIDALSFAVAAIALWLVRQSGVPRPVA
                     RDVAGEPGAGPAPSAVHPPVLSALVEGTRAVLSDPAMRVLVILSTAFNVAFTGPVVVG
                     LPFLVQVRFGGDASMLGLLLAAFGAGSVAGIVLVGSLPRPRSLGRLVLGIGAGLGIGL
                     AAIGVVPWQVCLVVLLLAGVGVGYLNVSIISWTQARTEPHLLGRTMSFLMLGSVVAAP
                     LSLGLAGLLVDVSATAMFVLAGGLVVAVCVAGMAGGLSRRMTW"
     gene            complement(2792..3160)
                     /locus_tag="VIU37_01600"
     CDS             complement(2792..3160)
                     /locus_tag="VIU37_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012663.1"
                     /translation="MPDDAFERVLRLVSEGKLTAEEAGPILDELGTMRDGSTRESPGT
                     TRGGDDSPGRALRVEVTERGRPVVNLRVPISLGRAAISRVPGISELTSERIREAIAAG
                     IKGPILDVDDDGDGVRISIE"
     gene            complement(3153..>3359)
                     /locus_tag="VIU37_01605"
     CDS             complement(3153..>3359)
                     /locus_tag="VIU37_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012664.1"
                     /translation="SAGAPGGSGTGNHAIAAAYDDARLRILRSLERGEIDVTEAGRRL
                     EMLDNGDPDLTSDGAGATEEAGNA"
BASE COUNT          484 a         1226 c         1251 g          398 t
ORIGIN      
        1 gatcgagcgg atcgcggccg gcgacccggc ggccggaccg atcgccgggc tcggccgcgc
       61 ggagcggttc cactggctgg tggcccccgc cagcacgatc atccaggcgt cggaggtcca
      121 caccgggctg tgccaggatc ccgcggccga gctcgagcac ctggtggcga cgctcgtcgc
      181 ctagcgtccg gccgggtcag gcgagccgcc gctccgccgt gctcagcgcg tcctcgagcg
      241 actcgccgcg cgccggcgcc acgatctcga tccgcagcct cgtcggcggc acgcccgggc
      301 gctcgtcccg gaacgtgcga tcgagacggc ttgccacctg cttcgcggcc cgggcgctgg
      361 tctcggccag gaggacccgg tagctcgccg gtccgacgcg cgccgcgcgg tcggtctcgc
      421 gaatctcggc ccgcaggacg tcggccaggc cgcgcgcggc ccgctcgagc gaatcggcgt
      481 ccccgctgcc ggccaggtcg atcaggagga ccgacacggg gcggccatag cgggcatgcc
      541 gcgacgactc gtggaggagc gcggcattcc agtcgggacg ggtgtcgagc gagtgcgggc
      601 gccgcgggcg atcgcggtcg tcgatcgcca gctggcggct gctccgccgg gtcgaggtcc
      661 catcgaggaa ggcctcgatc cgggccgcgg tgcgctcgtc gtggcggtcg tcggggagga
      721 cgaagcgggg cgtccggcgc ggccggccgg tggtgcgttg gttgcgatcc gcaggttcag
      781 ccactggtcg ccagtctagc ggccgttcgc gacggcaccg ccgaggccga cacccgtccc
      841 accaggcgtg gcaccgaacc cgccgcgacc gcgtgcgagg cgctacctcc cggcagcgcg
      901 gagcgccgcc ttgtgggcgc gcttgccggc ctggtaggcg gccagggcct cggggctgtc
      961 gacgtcgccg agcgtcggcc aggtgggagc gaccagttcg tatccgggcg ggcggatccc
     1021 gaaccggttg ccgagcacgg cgatgatcga cttcgccttc atctcgccga tccccggcag
     1081 gccgagcagg cgcgcctcca ggctcggccc gtcggccgcc gcggtccaca cccgcgcggc
     1141 gtcgttgccg tagtccgcgg cgatcgcggc gcacaacgcc tggaccttcc cggccatcga
     1201 acccgggaag cggtggagcg ccgggcgctc gcggaagacg gcgtccagcg ccgccggatc
     1261 catggccgcg atccgggcgg cgtcgagatg gccgagtcgc cgcttcaggt cggcgggacc
     1321 gctgaaggcc ttctgtaccg tgacctgctg gtcgagcgcg aacccgatca gcagcgcgag
     1381 cggttcctcg acgagcaggc ggtcggccgc ctcgtcgccg gtgaatggga gcgatgtcgg
     1441 cgtcgtcatg ggcgcatggt acgaggtcgg ccgcgcgcgg gcgatcctca ccaggtcatg
     1501 cgccggctca acccaccggc catgccggcg acgcacacgg cgacgacgag cccgccggcc
     1561 aggacgaaca tcgcggtcgc actgacatcc accagaaggc cggccagccc gagcgagagc
     1621 ggcgcggcca ccacggaacc cagcatcagg aagctcatgg tgcggccgag gaggtgcggc
     1681 tcggtccgcg cctgggtcca ggagatgatc gacacgttca ggtagccgac ccccaccccg
     1741 gcgagcagca ggacgaccag gcagacctgc cagggcacga cgccgatcgc cgccagcccg
     1801 atccccagcc ccgccccgat gccgagcacg aggcggccga ggctcctcgg cctcggaagc
     1861 gatccgacga gcacgatgcc ggcgaccgag ccggccccga atgccgccag gagcaggccg
     1921 agcatcgagg cgtcgccccc gaaccggacc tggacgagga acggcaggcc cacgacgacg
     1981 ggcccggtga aggcgacgtt gaaggcggtc gacaggatca cgaggacccg catggcgggg
     2041 tcgctcagga ccgcgcgcgt gccctcgacg agtgcgctga gcacaggcgg gtgcacggcg
     2101 gatggggccg gtcccgcacc cggttcgccg gccacgtccc gcgcgaccgg gcgcgggaca
     2161 ccgctctgcc ggacgagcca gagcgcgatc gcggccacgg cgaacgagag ggcgtcgatc
     2221 gcgaaggccg cgccgatgcc gatcacggcg acggcgatgc cggccagcgc cggcccgacc
     2281 gtcgtcatga gctgctgggt cccctgcagg agcgcgttcg cggacgacag ctgctcggtt
     2341 ggcaccagcc gggccacgat cgtgctgatg gccggataga agacggcgtc gacggtcccg
     2401 aacagcacgc cggcgacgac cagctgccag agctggatct gcgatccgaa gacgagggcg
     2461 gcgatgaccg tcgtgatcat cgcccggatc acgttcgaga cgagcatcac ggtcctgggc
     2521 gagacccggt cggcgagcac gccgccgaac agcaggagcg ctccgcgagg cagcgacgcc
     2581 gccagcagga ccgtgccgag cgcgaggccg gacccggtca gcccgaggac cagccaggac
     2641 agggcgacgt agtggaactg gtcgccgagc agggagacgc tctccccgaa ccagaccagc
     2701 cggtagtcgc ggctccggag cgggacgagc agcggcagct ggacgagccg cccgaggcgg
     2761 ctcaccggcg cgaccggctg gacgctctcg ctcattcgat cgagatccgg acgccgtcgc
     2821 cgtcgtcgtc cacgtcgagg atcgggccct tgatcccggc cgcgatcgcc tcgcggatcc
     2881 gctcggaggt cagttccgag atgccgggca cgcgactgat cgcggcgcgc ccgagcgaga
     2941 tgggcacccg caggttgacg accggccggc cgcgttcggt gacctcgacg cgcagcgccc
     3001 ggcccggcga atcgtcaccg ccgcgtgtgg tcccgggcga ttcccgggtc gagccatcgc
     3061 gcatcgtgcc gagctcgtcg aggatcggtc cggcctcctc ggccgtcagc ttgccctcgc
     3121 tgacgagccg gagcacccgt tcgaaggcgt cgtcaggcat tgccggcctc ctcggtcgca
     3181 ccggcgccgt ccgacgtgag atccgggtcg ccgttgtcga gcatctcgag ccgccgaccg
     3241 gcctcggtga cgtcgatctc gccccgctcg agcgatcgca ggatccggag ccgcgcgtcg
     3301 tcgtatgcgg cggcgatcgc atggttgccg gtcccggacc cgccgggcgc gcctgcaga
//
LOCUS       DATDDI010000111         1721 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_148062, whole genome shotgun sequence.
ACCESSION   DATDDI010000111 DATDDI010000000
VERSION     DATDDI010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148062"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VIU37_01610"
     CDS             <1..548
                     /locus_tag="VIU37_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012665.1"
                     /translation="PLTVLPTHRVLRGLGDTGVAAMVDRLEELFVVRRDVPAGELREV
                     FGAIGLAAGGEGRFGLWTRGGGFVLTARRAAFEPLLPAGGAAVRGLDVTLLGATIAQL
                     AGIDDDAVAGGAIEYTKSAAEAIELVESRADGADAAFLLEPTPVASIAAVARDGDVMP
                     QKSTYFYPKALSGLVINPHEW"
     gene            554..1429
                     /locus_tag="VIU37_01615"
     CDS             554..1429
                     /locus_tag="VIU37_01615"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6012666.1"
                     /translation="MPLTPEQILNHGQLPPPGGRPIRKDEIELQERGLYIESWLPERR
                     SRRKPLLFVHGELGGSWTWERYLGYFATRGWEGHALNLRNHHWSQTADATTLSFDTYT
                     EDVVAALERFGNGVVLVGHGMGGLLALKAAERMPITGLILLSAELPRELRPPARQHEL
                     RDIPDAYGRALIGWETLPERLLRDDRDLTLADVLRIQHLLGQKPHEAGAARRQMLSGV
                     PVDRRSLEGLPILVVGGGLDRTVPMADSERLADWLGATYEPFAAHSHYGLVLGETSYQ
                     QVADAIRGFLETNRL"
     gene            1557..1633
                     /locus_tag="VIU37_01620"
     tRNA            1557..1633
                     /locus_tag="VIU37_01620"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1591..1593,aa:Glu,seq:ctc)
BASE COUNT          237 a          604 c          622 g          258 t
ORIGIN      
        1 agccgctgac cgtcctgccg acgcaccggg tcctgcgcgg cctgggcgat accggcgtgg
       61 ccgcgatggt ggaccggctc gaggaactgt ttgtggttcg gcgcgacgtg ccggccggcg
      121 agcttcgcga ggtgttcggc gcgatcggcc tggccgccgg tggcgaaggc cgcttcggac
      181 tctggacgcg cggcggcggc ttcgtcctga ccgcgcgccg ggcggccttc gaacccctgc
      241 tgccggcggg cggtgccgcc gtccgtggtc tcgacgtgac gttgctcggg gcgacgatcg
      301 cgcaacttgc cggcatcgac gacgacgccg tggccggggg ggcgatcgag tacaccaagt
      361 cggccgccga ggcgatcgag ctggtggagt cccgggcaga tggcgccgac gccgcgttcc
      421 tgctcgagcc gacgcccgtc gcctcgatcg ccgcggtcgc ccgagacggc gacgtgatgc
      481 cgcagaagtc gacctacttc tatccgaagg ccctgtccgg cctcgtgatc aacccacacg
      541 agtggtgagc cccatgcccc tgacgcccga gcagatcctc aatcacggcc aactgccgcc
      601 cccgggcggg cggccgatcc gcaaggacga gatcgagctc caggaacgcg ggctctacat
      661 cgagtcgtgg ctgcctgagc gtcgctcccg ccggaagccg ttgctgttcg tgcacggcga
      721 gctcggcggg tcgtggacgt gggagcgata cctcggctac ttcgccacgc ggggctggga
      781 gggtcacgcg ctcaacctcc ggaaccacca ctggtcgcag acggcggacg cgacgaccct
      841 gtcgttcgac acctacaccg aggacgtcgt tgccgccctc gagcggttcg gcaacggcgt
      901 cgtgctggtc ggccatggga tgggcggcct cctggcgctc aaggcggccg aacggatgcc
      961 gatcaccggg ctgatcctgc tgagcgccga gctgcctcgc gagcttcggc cgccggcccg
     1021 ccagcacgag ctgcgcgaca tccccgatgc gtacggccgg gcgctgatcg ggtgggagac
     1081 gcttcccgag cgactgcttc gggatgatcg cgatctgacc ctggccgacg tcctgcgcat
     1141 ccagcacctg ctgggccaga agccgcacga ggccggcgcg gctcggcggc agatgctgtc
     1201 gggcgtcccg gtcgatcgcc gcagcctgga agggctgccg atcctggtcg tcggtggcgg
     1261 cctggatcgg acggtgccca tggcggattc ggagcggctg gccgactggc tcggcgccac
     1321 gtacgagccg ttcgccgcgc attcgcacta cgggttggtg ctcggcgaga ccagctacca
     1381 gcaggtggcc gacgcgatcc gcgggttcct ggagacgaac cgactctagc tcgcgggtcg
     1441 cccgggcgac cgggcaacgg ggctcgaagc ccgttcggcc catgtggcgt ttgatggccc
     1501 cgcgaccccg ctgctatcat gccgacccgg ccgggcgatc cgcctgcgcc gacggagccg
     1561 cattcgtcta gaggcccagg acaccgccct ctcaaggcgg agatcaccgg ttcgaatccg
     1621 gtatgcggta ccacccgccc cgacgggtcg gtcaggcgat ccgtcccttg acggacagag
     1681 ccgcgacgcc gacagttgct ccatgggtgg gatcagcggc g
//
LOCUS       DATDDI010000112         1570 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_522718, whole genome shotgun sequence.
ACCESSION   DATDDI010000112 DATDDI010000000
VERSION     DATDDI010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522718"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..323
                     /locus_tag="VIU37_01625"
     CDS             <1..323
                     /locus_tag="VIU37_01625"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HEY6012667.1"
                     /translation="AGLDCSGFVQHVYSHAGFCLPRTARAQAYARGVTLESWSRARLG
                     DLVYWRRGHIAIYRGWWDGHHHIWESGRPGTRTTGRALYPRTSSWDRLALPRRVDFTR
                     LHRC"
     gene            340..543
                     /locus_tag="VIU37_01630"
     CDS             340..543
                     /locus_tag="VIU37_01630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012668.1"
                     /translation="MTAYLSRVRKALAAGVAALVVPLAAGFVSESESGTHLTESELVT
                     AIVTGVLAFLATWAVKPNAEPPA"
     gene            597..968
                     /locus_tag="VIU37_01635"
     CDS             597..968
                     /locus_tag="VIU37_01635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012669.1"
                     /translation="MTDDTPIRPFLAFLQDHRAGACTRELTEALHEVVQAVVATGKPG
                     SVTLTLNIQPLKDAASVLKVTDAVRSKVPELARPAAIYFPDRAGNLSRENPDQPMFEG
                     MRVLEGERPRDVRELAAGDRD"
     gene            961..>1570
                     /locus_tag="VIU37_01640"
     CDS             961..>1570
                     /locus_tag="VIU37_01640"
                     /inference="COORDINATES: protein motif:HMM:NF021574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2303 family protein"
                     /protein_id="HEY6012670.1"
                     /translation="MTDADRVVGLTPGDPEPVVRDLQAVIDAATAAALPTIVEPGQVA
                     AFVVPPGGGLAYLSRDTDEDRRREGLGPAISQAGTTVVRDESAIVTLAERWGHPQSVL
                     VYADAVSRKVTAVLDDDPGGGQYGWRDRRVQLDLVHTPEWVRWAAIDGKLLSQVDFAE
                     HVEACLEDIRSPSAADMLEIAQTLEATVDVTFRSGVRLRDGQR"
BASE COUNT          200 a          587 c          582 g          201 t
ORIGIN      
        1 acgccggcct cgactgctcc gggttcgtcc agcacgtcta ctcccacgcc gggttctgcc
       61 tgccgcggac cgcgagggcg caggcgtacg cccgcggcgt caccctcgag tcgtggtcga
      121 gggcccggct cggcgacctc gtctactggc ggcgcggcca catcgccatc taccgcggct
      181 ggtgggacgg gcaccaccac atctgggagt ccggcaggcc cgggacccgc accacgggcc
      241 gggcgctgta cccgcggacg tcgtcgtggg accggctcgc gctgccccgc cgggtcgact
      301 tcaccaggct ccaccgctgc tgagaggagg tgaccaacca tgaccgccta cctgtcccgc
      361 gtccgcaagg cgctggccgc cggcgtggcc gcgctcgtcg tcccgctcgc cgccgggttc
      421 gtgtccgagt cggagtccgg cacgcacctg acggagtccg agctcgtgac ggcgatcgtg
      481 accggcgtgc tcgcgttcct cgcgacctgg gccgtcaagc cgaacgccga gccgccggcc
      541 tgaccccgcc cagcctgcga cccccggccg cccccggggg tcgctagcgt tcggggatga
      601 ccgacgacac cccgatacgt cccttcctcg cgttcctgca ggaccaccgc gccggcgcgt
      661 gcacccggga gctgaccgag gcgctgcacg aggtcgtgca ggccgtggtc gccaccggca
      721 agcccgggtc ggtgaccctc accctcaaca tccagccgct gaaggacgcc gcgtccgtcc
      781 tcaaggtcac cgacgcggtc cggtcgaagg ttcccgagct ggcgaggccg gccgcgatct
      841 acttcccgga ccgcgccggc aacctgtcgc gggagaaccc ggaccagccg atgttcgagg
      901 gcatgagggt cctcgagggg gagcggccgc gcgacgtccg cgagctcgcg gcgggcgacc
      961 gtgactgacg ccgaccgggt ggtcgggctc acgcccggcg acccggagcc cgtggtccgc
     1021 gacctgcagg ccgtcatcga cgcggccacc gcggcggcgc tcccgacgat cgtcgagccc
     1081 gggcaggtcg cggcgttcgt ggtgccgccc ggcggcgggc tggcctacct gagccgggac
     1141 accgacgagg accggcggcg ggagggcctc ggcccggcga tctcccaggc ggggacgacc
     1201 gtggtccgcg acgagtcggc gatcgtcacg ctcgccgagc ggtggggcca cccgcagtcg
     1261 gtgttggtgt acgccgacgc ggtgagccgc aaggtgaccg cggtcctcga cgacgacccg
     1321 ggcggcgggc agtacggctg gcgcgaccgg cgggtgcagc tcgacctggt gcacaccccg
     1381 gagtgggtgc gctgggcggc gatcgacggg aagctgctgt cccaggtcga cttcgcggag
     1441 cacgtcgagg cgtgcctcga ggacatccgc tccccgtccg ccgcggacat gctggagatc
     1501 gcgcagaccc tcgaggcgac ggtcgacgtg acgttccggt ccggggtgag gctgagggac
     1561 gggcagcgcc
//
LOCUS       DATDDI010000113         1879 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_356207, whole genome shotgun sequence.
ACCESSION   DATDDI010000113 DATDDI010000000
VERSION     DATDDI010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356207"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VIU37_01645"
     CDS             <1..669
                     /locus_tag="VIU37_01645"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6012671.1"
                     /translation="LIVVNLPHNPTGMLPDRATFDTLVSIAEEAGARLLVDEVYRGLE
                     FDEADRLPAGADTSRTGVSLGVMSKAYALAGLRIGWLATHDRELLARIAGFKDYTTIC
                     SSAPSEILAIIALRARDRVLARSRDIVATNLDRLDGFFEDWADRFEWIRPRGGSIGFP
                     RLTVPGVTIDDWAAGLVEAEGVLLLPASQFGHPGNYFRLGFGRTDMPEALAGLEAYAA
                     RTLR"
     gene            complement(685..1002)
                     /locus_tag="VIU37_01650"
     CDS             complement(685..1002)
                     /locus_tag="VIU37_01650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012672.1"
                     /translation="MTFGHHTTPARVALLAGPALLAGLLIALADSSPGWDSTGVTAGA
                     LVLAAGGAAYLGRARPWLWAALVGLPTPIIEIAGSGATGSLLALVFAGIGATTGWAAR
                     RAG"
     gene            1120..1728
                     /locus_tag="VIU37_01655"
     CDS             1120..1728
                     /locus_tag="VIU37_01655"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEY6012673.1"
                     /translation="MAPKTALPHSRNGVATRKRSPEPRLSIRAPEIQAFGTLRELPIA
                     LPAKARAGSCRLLNEILADTMVLYAMYKKHHWLVAGPTFYQLHLLFDKHADEQLELVD
                     LLAERIQSLGGIAVGDPRQAAELTSIERPPDGAEEVSVMLDRTLRAHETILTKVRRAI
                     KATEESEDWGTNDLLMSDVLRRHELQVWFLAEHVVDLPLVGA"
BASE COUNT          279 a          700 c          648 g          252 t
ORIGIN      
        1 ctgatcgtcg tcaacctgcc gcataacccg accgggatgc tgcccgaccg ggcgaccttc
       61 gacacgctcg tatccatcgc cgaggaggcc ggcgcccggc tcctcgtcga cgaggtctat
      121 cgcggtctcg agttcgacga ggccgaccga ctgcccgccg gtgccgacac gtcgcgaacc
      181 ggggtctcgc tcggcgtgat gtcgaaggcg tacgcgctgg cagggctgcg gatcggctgg
      241 ctggcgaccc acgaccgcga gctgctggcc cggatcgccg ggttcaagga ctacacgacg
      301 atctgctcct cggcgccgtc cgagatcctg gcgatcatcg ccctgcgcgc ccgcgaccgc
      361 gtgctggcga ggtcacgcga tatcgtggcg acgaacctgg accgattgga cggcttcttc
      421 gaggactggg cggaccgctt cgagtggatc cgtcctcgtg gcggctcgat cggcttcccg
      481 cgcctgaccg tcccgggcgt cacgatcgac gactgggccg cgggcctcgt cgaggccgag
      541 ggcgtgctgc tcctgccggc gtcgcaattc ggccacccgg gcaactactt ccgactcggg
      601 ttcggccgga ccgacatgcc ggaggccctg gccgggctgg aggcctacgc ggcacgcacc
      661 ctgcgctgaa cgcgcggcga ccggtcagcc ggctcgcctt gcggcccagc cggtcgtcgc
      721 gccgatgcct gcgaagacca gcgcgaggag cgacccggtc gcgccgctgc cggcgatctc
      781 gatgatcggc gtgggcagac ccacgagcgc ggcccacagc cacggccggg cacgcccgag
      841 gtaggcggcg ccgccggccg cgagcacgag ggcgccggcg gtgacgccgg tcgagtccca
      901 acccgggctg ctgtcggcca gcgcgatcag caacccggcc aggagtgccg ggcccgcgag
      961 gagcgccacg cgcgccggcg tcgtgtgatg cccgaaggtc atgacccatc cacctccgca
     1021 agccagttgc gatgcccctc ggacgaacgc cgtcgcatcg gatgttgcgc ccgcgacaga
     1081 gttgggctca acggacgtcc ccgtagcaga ggtatccgca tggctcccaa gaccgcactg
     1141 ccccacagcc gcaacggcgt cgcgacgcgc aagcgatcgc ccgagccgcg gctcagcatc
     1201 cgggcgcccg agatccaggc cttcgggacg ctgcgcgagc taccgatcgc cctgccggcc
     1261 aaggcccggg ccggcagctg ccggctgctg aacgagatcc tggctgacac gatggtgctc
     1321 tacgcgatgt acaagaagca ccactggctc gtcgccggac cgaccttcta ccagcttcac
     1381 ctgctgttcg acaagcacgc cgacgagcag ctcgagctgg tcgacctcct cgccgagcgc
     1441 atccagagcc tcggtgggat cgcggtcggc gatccgcgcc aggccgccga gctgacctcg
     1501 atcgaacggc cgcccgacgg tgccgaggag gtctcggtca tgctcgatcg gacgctccgg
     1561 gcgcacgaga ccatcctcac caaggtccgg cgcgcgatca aggcgaccga ggaatccgag
     1621 gactggggca ccaacgacct gctgatgagc gacgtcctgc gccgccatga gctgcaggtc
     1681 tggttcctcg ccgagcacgt ggtcgacctg ccgctcgtcg gcgcctgatc ccggggcccg
     1741 gcgcgtcggc cccgccggcg ctcagccgcg cttgcggggc agatccagga acggcagcgg
     1801 gacgaccgtg gcgccgaccc ggccgcggcg tccctcgacc gtccattcga ccgccagcgg
     1861 ggacccgacc ggctcgtac
//
LOCUS       DATDDI010000114         1641 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_605971, whole genome shotgun sequence.
ACCESSION   DATDDI010000114 DATDDI010000000
VERSION     DATDDI010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605971"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VIU37_01660"
     CDS             <1..325
                     /locus_tag="VIU37_01660"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY6012674.1"
                     /translation="LVLIPSATSRGLSEYLWRVEQVSHALANGYFVGTINRVGKEPLG
                     DDDFYGQSYFVDPRGQFVGAIGDAHNEELLVRDLDLGMIEEVRQTWQFYRDRRPEEYA
                     DLVRL"
     gene            409..>1641
                     /gene="hydA"
                     /locus_tag="VIU37_01665"
     CDS             409..>1641
                     /gene="hydA"
                     /locus_tag="VIU37_01665"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HEY6012675.1"
                     /translation="MRTLIKGGTIVNADSMFRADVLVDGEEIALIGLDLDVAADKVVD
                     ATGKWVIPGAIDPHTHMELPFGGTFAKDTFETGTRAAAFGGTTTIIDFAVQPRGGTLR
                     QGLDTWHEKADGKACIDYGFHCIVSDMRDDVLPEMDRLVEEGVTSFKLFTAYPGVFYS
                     DDAQIFKALQRSAVNGGQILIHAENGPVIDVVAAQLVEQGTTDPIGHGLARYPVFEGE
                     ATNRVIRLAQAAGAPVYFVHMSAKEALNALRQAKDEGLPAYAETCPQYLFLSLDDLGH
                     GFEGAKFVCSPPLRDTKGGHQEELWKGLVSDDLMLVATDHCPFDFHGQKELGRGDFRK
                     IPNGLPGVEDRVDLIHDGGVVKGRITPSRFVELVSTAPARFFGLPRKGAVAVGFDADL
                     VVYDPNRKHTISATTHHMD"
BASE COUNT          273 a          599 c          532 g          237 t
ORIGIN      
        1 gctggtgctc atcccgtcgg ccaccagtcg tggcctgtcg gagtacctgt ggcgggtgga
       61 gcaggtcagc cacgccctcg ccaacggcta cttcgtcggg accatcaacc gggtcggcaa
      121 ggagcccctc ggcgacgacg acttctacgg ccagagctac ttcgtcgacc cgcgcgggca
      181 gttcgtcggc gcgatcggcg acgcccacaa cgaggagctc ctcgtccgcg acctcgacct
      241 cggcatgatc gaggaggtcc gccagacctg gcagttctac cgcgaccggc gcccggagga
      301 gtacgccgac ctggttcggc tgtaggcaac ggcacgagct ggagggcccg ccgcacggcg
      361 ggccttccgg attcggcccc aacggcgtcc cgcgaggagt tgaaacccat gcggaccctc
      421 atcaagggcg gcacgatcgt caacgccgac tcgatgttcc gcgcggacgt cctggtcgac
      481 ggtgaggaga tcgcgctcat cgggctggat ctcgacgtcg cggccgacaa ggtcgtcgac
      541 gcgaccggca agtgggtcat ccccggcgcg atcgacccgc acacccacat ggagctgccg
      601 ttcggcggca ccttcgccaa ggacaccttc gagaccggca cccgggcggc ggccttcggc
      661 ggcacgacga cgatcatcga cttcgccgtc cagccgcggg gcggcacgct ccgccaggga
      721 ctcgacacgt ggcacgagaa ggccgatggc aaggcctgca tcgactacgg cttccactgc
      781 atcgtctcgg acatgcggga cgacgtcctg ccggagatgg atcgcctcgt cgaggaaggc
      841 gtgacgagct tcaagctctt caccgcctat cccggcgtct tctacagcga tgacgcccag
      901 atcttcaagg ccctccagcg cagcgccgtc aacggcggcc agatcctcat ccatgccgag
      961 aacggaccgg tcatcgacgt cgtcgcggcc cagctcgtcg agcagggcac gaccgacccg
     1021 atcggccacg gcctcgcgcg ctacccggtc ttcgagggcg aggcgacgaa ccgcgtgatc
     1081 cgcctggccc aggctgccgg ggcgccggtg tacttcgtcc acatgtcggc caaggaggcg
     1141 ctcaacgccc tgcgccaggc gaaggacgag ggcctgccgg cctacgccga gacctgcccg
     1201 cagtacctgt tcctgtcgct cgatgacctc ggccatggct tcgaaggcgc caagttcgtc
     1261 tgctcgccgc cgcttcgcga caccaagggc ggccaccagg aggagctctg gaagggcctc
     1321 gtcagcgacg acctcatgct cgtcgcgacg gaccactgcc cgttcgactt ccacggccag
     1381 aaggagctcg gccgcggcga cttccggaag atcccgaacg gcctgccggg cgtcgaggac
     1441 cgcgtcgacc tcatccacga cggtggcgtc gtgaagggca ggatcacgcc cagccgcttc
     1501 gtcgagctcg tctcgaccgc gccggcgcgg ttcttcggcc tgccccgcaa gggcgccgtt
     1561 gccgtcgggt tcgacgccga cctcgtcgtc tacgacccga accggaagca caccatcagc
     1621 gccacgaccc accacatgga c
//
LOCUS       DATDDI010000115         2018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_44042, whole genome shotgun sequence.
ACCESSION   DATDDI010000115 DATDDI010000000
VERSION     DATDDI010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2018
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44042"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VIU37_01670"
     CDS             <1..268
                     /locus_tag="VIU37_01670"
                     /inference="COORDINATES: protein motif:HMM:NF019375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1611 domain-containing protein"
                     /protein_id="HEY6012676.1"
                     /translation="PEASFPIASLPGYIDLHERVAGLVAPSKVVAVALNTSLYPEDAE
                     AHRIIAATEAETGLPADDPVRFGADRLWRAIHDRVNALPWVDPA"
     gene            265..1314
                     /locus_tag="VIU37_01675"
     CDS             265..1314
                     /locus_tag="VIU37_01675"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide epimerase"
                     /protein_id="HEY6012677.1"
                     /translation="MSRHLDQEVLHLALRDPFRIARSDHGGGHEITTVIVELRDDRFP
                     GLVGVGEGYPDRYYGETPETLAVVLPMLVDAVGDFEPTRDGLAAADSAMDGVIRGHGA
                     AKCALDIALHDLAGKVSGVPVHQLLGLPAELPPTDFTIGIDTPEIVAQRAQRASAFPA
                     LKIKVGGPGDLATLEAVRAVYDGPIRVDANTGWTLAGALAILADLERLGVELIEQPFP
                     ARRLDLLRQLQDRSALPIVADESCVLPEDLDGLVGVVAGVNVKLAKCGGIGPARAMLE
                     RARELGFRTFLGCMEETSVGIAGSAVVASLADWVDLDGCLLLDADPFGGLELGPGHRW
                     ILPSRPGLGLARRAG"
     gene            1603..1929
                     /locus_tag="VIU37_01680"
     CDS             1603..1929
                     /locus_tag="VIU37_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012678.1"
                     /translation="MESRSVAARAPDPDAVEFIRFCYHRRRVGWPELYDEMCAVAGRG
                     LFRGFSADDLMSRGVGFSLFDMPALAALATRIVAEEQALRRPVGVVISETVTAAPAVS
                     LAPSGA"
BASE COUNT          261 a          734 c          710 g          313 t
ORIGIN      
        1 cccggaggcc tcgttcccga tcgcttcgct gcccggctac atcgacctgc acgagcgggt
       61 cgccggcctc gtcgccccgt cgaaggtcgt ggccgtcgcg ctcaacacgt cgctctatcc
      121 cgaagacgcc gaggctcacc ggatcatcgc ggcgaccgaa gccgagaccg ggctgccggc
      181 agacgatccg gtgcgcttcg gcgccgaccg gctgtggcgc gccatccacg accgcgtcaa
      241 cgcccttccc tgggtcgatc cggcatgagc cggcacctgg accaggaggt cctccacctg
      301 gcgctgcgcg acccgttccg catcgcccgg agcgatcacg gcggtggcca cgagatcacc
      361 acggtcatcg tcgagctccg cgacgaccga ttcccgggtc tcgtcggggt gggcgagggg
      421 tacccggacc gctattacgg cgagacgccg gagacgctgg ccgtcgtgct gccgatgctc
      481 gtcgacgcgg tcggcgactt cgaaccgacc cgggacgggc tggccgccgc tgactcggcg
      541 atggacggcg tcatccgcgg gcacggcgcg gccaagtgcg ccctggacat cgcattgcac
      601 gacctcgccg gcaaggtctc gggcgtgccc gtccaccaac tcctcgggct gccggccgag
      661 ctgccgccga ccgacttcac catcggcatc gacacgcccg agatcgtcgc gcagcgggcc
      721 cagcgggcgt cggcgttccc ggcgctcaag atcaaggtcg gtgggcccgg cgacctggcc
      781 acgctggagg ccgtccgggc cgtctacgac ggtcccatcc gggtcgacgc aaacaccggc
      841 tggacgctcg ccggcgcgct ggcgatcctg gccgatctcg agcgactcgg tgtggagctc
      901 atcgagcagc cgttccccgc gcgccggctg gacctgcttc ggcagctcca ggaccgatcc
      961 gccctgccca tcgtcgccga tgagagctgc gtcctcccgg aggacctcga cggattggtc
     1021 ggggtcgtcg ccggcgtcaa cgtcaagctg gccaagtgcg gggggatcgg tcccgcgcgc
     1081 gccatgctcg aacgcgcccg cgaactcggg ttccggacct tcctcggctg catggaggag
     1141 acgtcggtcg ggatcgccgg gtcggcggtc gtcgcgtcac tggcggactg ggtcgatctc
     1201 gatggctgcc tgctgctcga cgcggacccg ttcggagggc tcgagctcgg ccccggccat
     1261 cgctggattc tcccgtcgcg gcccggcctg ggcctcgcgc gccgggccgg ctgaaccggt
     1321 tcacgctcgg accgtacggg cgttcggtga acgcccgttc gtgtggacaa cttggtggac
     1381 gaagtcgtgg acaagccccc ttccgggccg gcgccggcgg tcctaggatg gcctctcacc
     1441 ggtcgaccta cccccgaggg agggagtcgg cggggccgcg agaccaccac cggtcgcagg
     1501 gttcgatccg cccgagacgc cggtgggggc ttcgaatcgt cattggtcgc cgatcgggct
     1561 tcgtccggtc gcgcctggga gtgaagggag ggcacgccat cgatggagtc acgcagcgta
     1621 gccgcgcgcg ccccggatcc cgacgccgtc gagttcatcc gcttctgcta tcaccgtcgt
     1681 cgggttggct ggccggagct gtacgacgag atgtgcgcgg tggccggtcg cggactgttc
     1741 cgcggcttca gtgcagatga cctgatgagc cggggcgtcg ggttcagcct cttcgacatg
     1801 cccgccctcg ccgccctggc gacccggatc gtcgccgagg agcaagcgct tcgccggccc
     1861 gtcggcgtgg tcatctccga gaccgtgacg gccgcgccgg cggtcagcct ggcgccatcc
     1921 ggcgcctgat ccccgcgtcg atctcgtccc tgtcggtatc gacagacgcg tgacccccgc
     1981 cggtaccggc gggggtcacg cgtctgtcga taccgaca
//
LOCUS       DATDDI010000116         2933 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_293868, whole genome shotgun sequence.
ACCESSION   DATDDI010000116 DATDDI010000000
VERSION     DATDDI010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293868"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..995)
                     /locus_tag="VIU37_01685"
     CDS             complement(<1..995)
                     /locus_tag="VIU37_01685"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEY6012679.1"
                     /translation="MGTGSIFARAADLEATGRSFVVATVVAVRRPTSARPGASGIVHP
                     DGTIEGWVGGSCAQPVVVREALRALVDGQPRLLRLSKDVPAEGRRGDGVVELVMTCHS
                     GGTLEIYVEPHLPAPVLWVAGTTPIAGALVALGAAACWRVSVFDPVADPAAFPGAERV
                     IAGTDIRDTDPAANPAVVVATQGVWDEEATAAALARNAAYVGLVASPTRAGVVRAWLR
                     DEAGIPDERLAALRAPAGIDLGAETAEEVALSILAELVQVRRGTAAFVASPGPATLAG
                     GASPVPIEPVIDDIVLLDPVCGMTVDRAHARHLAEHDGVVYAFCSMGCRTSFIREP"
     gene            complement(1013..>2933)
                     /locus_tag="VIU37_01690"
     CDS             complement(1013..>2933)
                     /locus_tag="VIU37_01690"
                     /EC_number="1.2.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aerobic carbon-monoxide dehydrogenase large
                     subunit"
                     /protein_id="HEY6012680.1"
                     /translation="RPDRGPDKQTNHIWHWESGDRAATDAALAAADVHIEQDIYIPRI
                     HVASIETCGCVADWNPVRQQLTLHMTSQAPHAIRTVIALVAAGAGLPMSEQNIRVKTH
                     DIGGGFGGKVPVYPGYVLAVAASFLIGKPVKWIEDRSENLQADSFARDYHIHAELGAT
                     KDGKITSLKAKTIADHGYSDAAADPSKYPAGLFNVITGSYDFPNAFVEVDGVYTNKPP
                     GGVAYRCSFRVTEAVHAVERLVDILAHEIGKDPAQLRMENFIQPEQFPYKTPTGWSYD
                     SGNYPAALQKAMDIIDYAGLRKEQAEKRSRGELMGIGISSFTEIVGAGPSHDFDILGI
                     KMFDACEIRVHPTGKVIARLGVQSQGQGHETTFAQIISEELGFPVADIKIEEGDTDTA
                     PYGLGTYASRSTPVAGAATAMAARKIRDKARKLAAHLLEANEEDLEWEPGKFSVKGSP
                     DRFKTIQEIAFAAYTNHPQGMEAGLEAVDYYDPPNLTFPFGSYICVVDIDKATGQVHV
                     RRFVAVDDCGNIINPMIVDGQIHGGLTMGLAPALYEEITYDELGNNMAGTFMDYLLPT
                     AVETPSWETAKTITPSPHHPIGAKGVGESATVGAPPAIANAVVDALWHLGVRNVDIPM
                     TPQKIWAILHDKGVA"
BASE COUNT          399 a          987 c         1080 g          467 t
ORIGIN      
        1 ggttcgcgga tgaagctggt ccggcagccc atcgagcaga aggcatagac gacgccgtca
       61 tgctcggcaa ggtgccgggc atgggcccgg tcgaccgtca tcccgcagac cgggtccagc
      121 agcacgatgt cgtcgatcac cggttcgatc gggaccgggc tcgcgccgcc ggcgagcgtg
      181 gcggggcccg gcgaggccac gaacgcggcg gtgccgcgcc tgacctggac cagctcggcc
      241 aggatcgaga gggcgacctc ctcggccgtc tcggcaccca ggtcgatgcc cgccggagct
      301 cgcagcgcgg cgaggcgctc gtcggggatc cctgcctcgt cgcgcaacca cgcccggacc
      361 accccggctc gtgtcggcga ggcgaccagg ccgacgtagg ccgcgttccg ggcgagggcg
      421 gcggcagtcg cctcctcgtc ccagacgccc tgcgtggcga ccacgacggc cgggttcgcg
      481 gccggatccg tgtcgcggat gtcggtgccg gcgatcacgc gctcggcgcc ggggaaggcc
      541 gccgggtcgg cgaccggatc aaacaccgag acgcgccagc acgccgccgc gccgagggcg
      601 acgagcgcgc cggcgatcgg cgtcgtgccg gccacccaca ggaccggcgc aggcagatgc
      661 ggttccacgt agatctccag ggtcccgccg gaatggcagg tcatgaccag ctcgacgacg
      721 ccgtcgccgc gacggccctc ggccgggacg tccttcgaca ggcggaggag ccgcggttgc
      781 ccgtcgacga gcgcccgaag cgcctcgcgc acgacgacgg gctgggcgca gctgccgccg
      841 acccagccct cgatggtgcc gtcgggatgc acgatgccgg acgcgccggg ccgggccgag
      901 gtcggccggc ggaccgccac gaccgtggcg accacgaacg accggcccgt cgcctccagg
      961 tcggcggccc gcgcgaagat cgaacccgtg cccacggtgg cctcctgtgc tcctaggcca
     1021 cgcccttgtc gtggaggatg gcccagatct tctggggcgt catcgggatg tcgacgtttc
     1081 ggacaccgag gtgccagagg gcgtcgacga cggcgttggc gatggccggc ggggcaccga
     1141 cggtggccga ttcccccacc cctttcgccc cgatcgggtg atgcggggac ggggtgatcg
     1201 tcttggcggt ctcccagctc ggcgtttcga cggccgtcgg gagcaggtag tccatgaacg
     1261 tgccggccat gttgttgccc agctcgtcgt aggtgatctc ctcgtacagc gccggtgcga
     1321 ggcccatcgt caggccgccg tggatctggc cgtcgacgat catcgggttg atgatgttgc
     1381 cgcagtcgtc gaccgccacg aagcggcgga cgtggacctg gccggtcgcc ttgtcgatat
     1441 ccacgacgca gatgtagctc ccgaacggga aggtcaggtt cggcgggtcg tagtagtcga
     1501 ccgcctcgag accggcctcc atcccctgcg gatggttggt gtaggccgcg aaggcgatct
     1561 cctggatggt cttgaagcgg tccggcgagc ccttgacgct gaacttgccg ggctcccact
     1621 cgaggtcctc ctcgttggcc tcgaggaggt gcgccgcgag cttccgcgcc ttgtcccgga
     1681 tcttgcgggc cgccatggcg gtggccgcgc cggcgaccgg cgtggagcgc gacgcgtagg
     1741 tgccgagccc gtagggcgcg gtgtccgtgt cgccctcctc gatcttgatg tcggcgaccg
     1801 ggaagccaag ctcctcggag atgatctggg cgaaggtcgt ctcgtggccc tggccctggg
     1861 actggacgcc gagccgcgcg atgaccttgc cggtcggatg gacgcggatc tcgcaggcgt
     1921 cgaacatctt gatcccgagg atgtcgaagt cgtgcgacgg cccggccccc acgatctcgg
     1981 tgaagctgct gatgccgatg cccatgagct cgcccctgga gcgcttctcc gcctgctcct
     2041 tgcggaggcc ggcgtagtcg atgatgtcca tcgccttctg gagcgcggcc gggtagttcc
     2101 cggagtcgta cgaccagccg gtcggggtct tgtacgggaa ctgctcgggc tggatgaagt
     2161 tctccatccg gagctgcgcc gggtccttgc cgatctcgtg ggcgaggatg tcgaccaacc
     2221 gctccaccgc gtggacggcc tccgtcacgc ggaacgagca gcggtaggcc acgcctcccg
     2281 gcggcttgtt ggtgtagacg ccgtcgacct cgacgaacgc gttcggaaag tcgtacgagc
     2341 cggtgatgac gttgaacagc ccggccgggt acttcgacgg gtcggccgcg gcatcgctgt
     2401 agccgtggtc ggcgatcgtc ttggccttga gcgaggtgat cttgccgtcc ttggtggcac
     2461 ccagctcggc gtggatgtgg tagtcgcggg cgaacgagtc ggcctggagg ttctccgagc
     2521 gatcctcgat ccacttgacc ggcttgccga tgaggaacga cgccgcgacg gcgaggacgt
     2581 agcccgggta caccgggacc ttgccgccga acccgccgcc gatgtcgtgg gtcttgaccc
     2641 ggatgttctg ctcggacatc ggcagcccgg cgcccgcggc gacgagggcg atgaccgtcc
     2701 ggatcgcatg cggggcctgg ctggtcatgt gcagggtgag ctgctggcgg accgggttcc
     2761 agtcggcgac gcagccgcac gtctcgatcg aggcgacgtg gatccgcggg atgtagatgt
     2821 cctgctcgat gtggacgtca gccgcggcga gcgccgcgtc ggtcgcggcg cggtcgcccg
     2881 attcccagtg ccagatgtgg ttggtctgct tgtccgggcc gcggtccggc cgg
//
LOCUS       DATDDI010000117         1635 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_481230, whole genome shotgun sequence.
ACCESSION   DATDDI010000117 DATDDI010000000
VERSION     DATDDI010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481230"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VIU37_01695"
     CDS             <1..372
                     /locus_tag="VIU37_01695"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6012681.1"
                     /translation="ESDVELRLELAEADRVSGLVTPEEEHELIQIAREALSNVARHSG
                     AGRATMSIRREGQQIVLRVEDDGRGFDPKDRRGPGHFGLANLRDRAAAVGGTTRIESA
                     PGKGTRIIVRLPIPDGESAIP"
     gene            378..1061
                     /locus_tag="VIU37_01700"
     CDS             378..1061
                     /locus_tag="VIU37_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6012682.1"
                     /translation="MRPDATEPKPRVLRLLVVDDHEVVRQGLVALLDRREGFQVVAEA
                     GTVAEAIDQAKRFEPDIVVMDIRLPDGSGIEACREIRAELPGTRVVMLTSFPDEDAVL
                     SAIVAGASGYLLKQVRARDLVAALEAVGRGESLLDPAVTEKVLERVRRIATGAYTDEL
                     AQLTAQEQKILLLVAEGKTNKEIASDVFLSDKTVKNYVSSILSKLNLERRAQAAAFVA
                     KHRLDRREG"
     gene            1172..>1635
                     /locus_tag="VIU37_01705"
     CDS             1172..>1635
                     /locus_tag="VIU37_01705"
                     /inference="COORDINATES: protein motif:HMM:NF014594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012683.1"
                     /translation="MKLVTPAEAVAGIESGQQVYVQCAAATPSVLLDALVARAPELED
                     VGVIHLHTEGPGPHLAPEMVGHFRHRALFIGPNARRAVNEGRADFVPVFLSDVPRLFE
                     SGMQPLDAVFVNATPPDEHGFCSLGPSVEAMHAAIRAAKTVIVQFNNSFPRTL"
BASE COUNT          247 a          599 c          573 g          216 t
ORIGIN      
        1 gagagcgacg tcgagctgcg cctcgagctc gccgaggcgg accgcgtatc cggcctcgtg
       61 accccggagg aagagcacga gctcatccag atcgcccgcg aggcgctcag caacgtcgcc
      121 cggcacagcg gcgccggccg cgccacgatg tcgattcggc gtgagggcca gcagatcgtc
      181 ctcagggtgg aggatgacgg ccggggcttc gacccgaagg atcgccgcgg tccgggccac
      241 ttcggcctcg ccaacctccg cgatcgcgcc gcggccgtgg gcggcacgac gcgaatcgag
      301 agcgcacccg gcaaggggac ccgtatcatc gtccggttgc ccatcccgga cggagagagc
      361 gcgatcccgt gacgaccatg cgccccgacg cgaccgagcc caagcccagg gtcctccgcc
      421 tcctcgtcgt cgacgatcac gaggtggtgc gacagggcct cgtggcactc ctcgaccggc
      481 gtgagggctt ccaggtcgtc gccgaggccg ggaccgtcgc cgaggcgatc gaccaggcga
      541 agcgcttcga gccggacatc gtcgtcatgg acatccggtt gccggatggg tcgggtatcg
      601 aggcctgccg cgagatccgg gcggagctgc ccggcacgcg cgtcgtcatg ctgacctcgt
      661 tcccggacga ggacgccgtg ctgtcggcga tcgtcgccgg cgccagcggc tacctcctca
      721 agcaggtccg ggcgcgcgat ctcgtggccg ccctcgaggc ggtcggccgc ggcgagtcgc
      781 tgctcgaccc ggccgtgacc gagaaggtcc tggagcgggt ccgccggatc gcgaccgggg
      841 cctacacgga cgagctggcg cagctgacgg cccaggagca gaagatcctg ctgctcgtcg
      901 ccgagggcaa gacgaacaag gagatcgcgt cggacgtgtt cctgtccgac aagacggtca
      961 agaactacgt cagctcgatc ctctcgaagc tcaacctcga gcgccgcgcc caggccgccg
     1021 cgttcgtcgc caagcaccgc ctcgaccggc gcgagggctg agccgaccct gccgacggca
     1081 ggccatcggg cctgcgcggc gacgaacggc ccgtcgcgtc gggccggtcg gaccggcctt
     1141 cggacaggcc ggaggaccta ccctcgggac catgaagctc gtcacccccg ccgaagcggt
     1201 cgccggcatc gagagcggcc agcaggtcta cgtccagtgc gccgcggcca cgccatcggt
     1261 cctgctcgac gccctcgtgg ctcgggcgcc ggagctcgag gacgtcggcg tcatccacct
     1321 ccacacggag ggtcccgggc cgcatctcgc ccccgagatg gtcggccact tccggcaccg
     1381 ggccctgttc atcgggccga acgcccgccg cgcggtcaac gagggccggg ccgacttcgt
     1441 gccggtcttc ctgtcggacg tgccgcggct cttcgagtcc gggatgcagc cgctcgacgc
     1501 ggtcttcgtg aacgcgacgc caccggacga gcacgggttc tgctcgctcg gcccgagcgt
     1561 cgaggcgatg cacgcggcga tccgggccgc gaagaccgtc atcgtccagt tcaacaacag
     1621 cttcccgcgg acgct
//
LOCUS       DATDDI010000118         2473 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_439589, whole genome shotgun sequence.
ACCESSION   DATDDI010000118 DATDDI010000000
VERSION     DATDDI010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439589"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /locus_tag="VIU37_01710"
     CDS             <1..543
                     /locus_tag="VIU37_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012684.1"
                     /translation="DASNDSLRLSSRHTDRGPFGALGERSTWRVTLPDGPRLDTQVTL
                     NAGSSTVNLAGASLGRFETTLNAGSTTVDLGSVREISEVRVRVNAGSITMTLPHQSVS
                     GSFEVNAGSVELCAAPDAGLRIRTDESIVSSYDFAGLTKNGSTWQTPGYDGAAIKIEL
                     DAHATAGSVSLDRTGGPCGG"
     gene            536..1090
                     /locus_tag="VIU37_01715"
     CDS             536..1090
                     /locus_tag="VIU37_01715"
                     /inference="COORDINATES: protein motif:HMM:NF015957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEY6012685.1"
                     /translation="MAEPLHRSRDDRMLAGVAAGVAETLDADPSLVRIVWALLAILSG
                     GVAILVYIVMAIVVPEAPIEPWRPDVPAPGGVVAPGGGPSPDPSAQPAPPWGLAPGTP
                     SPGSRSEWRAARRAARRARRQQGLGSGEAGLIFGVVLILVGALFLVREAIPWFDFHLW
                     WPIGIIGLGALLLVAALRPRRPTE"
     gene            1160..2233
                     /locus_tag="VIU37_01720"
     CDS             1160..2233
                     /locus_tag="VIU37_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012686.1"
                     /translation="MPSSMSWLLTASVAGLLAGLGLVLRGLAGYRSALRVGDTSTSTI
                     SSAAAGEVRISGVIEPAELTLVSLLQSTPCVYYRASIGNGGDASLPDSRYTEARSVGF
                     RVRDATGSLRVFPRGARVDAPLRFHDQTGIAGDEPPGLQLRTGPATQTAELDEATMIA
                     DLLTVHDPRARGESVAWDGLRHQGGRLEYREQRLEPGDAVTVVGRALPFSDLDDPATA
                     DLGLGGDDLDADPEIAADLAAARATGTLADDAGEAWGNAAIPGFGIGRPVSPPVIDPA
                     ATPLPLATADAATRAKRRFEIAPDDLVIAASDEVPLLIAYGTPGAVVGRDRARFAVGL
                     LGAGLAIASALVLALSLSGGLGA"
     gene            2230..>2473
                     /locus_tag="VIU37_01725"
     CDS             2230..>2473
                     /locus_tag="VIU37_01725"
                     /inference="COORDINATES: protein motif:HMM:NF015944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEY6012687.1"
                     /translation="MSPAAAAALFAVALVVAIAGYVALASYNAIVALRQRIDKAWANI
                     DVVLKQRHDQLPNLVAAVRDLMTIERDVLTEVTRARA"
BASE COUNT          299 a          922 c          904 g          348 t
ORIGIN      
        1 gacgccagca acgattcgct ccggctgagc tcgcgccaca ccgatcgcgg cccgttcggc
       61 gccctcggcg agcgctccac ctggcgggtc acgctcccgg acgggcctcg gctggacacg
      121 caggtgacgc tcaacgccgg ctcgtcgacc gtcaacctcg ccggcgccag cctcggccgg
      181 ttcgagacca cgctcaacgc cggctcgacg acggtcgatc tgggatccgt ccgcgagatc
      241 tcggaggtcc gggtccgggt caacgccgga tcgatcacga tgacgctccc gcaccagtcc
      301 gtcagcggct ccttcgaggt caatgcgggc tcggtcgagc tgtgcgcggc accggacgcc
      361 ggcctgcgga tccgaaccga cgagagcatc gtgtcgagct acgacttcgc gggcctgacc
      421 aagaacggct cgacctggca gacgccgggc tacgacggcg ccgcgatcaa gatcgaactc
      481 gacgcccatg ccacggcagg ctcggtgagc ctggaccgga ccggcggacc ctgcggtggc
      541 tgagccgctg catcgctcgc gcgacgatcg aatgctggcc ggcgtcgccg ccggtgtcgc
      601 ggagacgctc gacgcggatc cgtcgctggt ccggatcgtc tgggcgttgc tcgccatcct
      661 gagcgggggc gtcgcgatcc tcgtctacat cgtcatggcg atcgtggtgc cggaagcccc
      721 catcgagccc tggcggccgg acgtccctgc gcccggtggc gtcgtggcgc cgggcggcgg
      781 ccccagcccg gacccgtcgg cccagccggc cccgccctgg ggtctcgccc cggggacgcc
      841 gtcacccggc agtcggtccg aatggcgcgc cgcgcgccgc gccgcgaggc gcgctcgacg
      901 gcagcagggg ctcggctcgg gcgaggcggg cctgatcttc ggggtcgtgc tgatcctcgt
      961 cggcgccctc ttcctggtgc gcgaggcgat cccgtggttc gacttccacc tgtggtggcc
     1021 gatcgggatc atcggcctcg gcgccctgct cctggtggcc gccctgcgac cgcgccgacc
     1081 gacggagtaa ccgggcggcg tcgccgcagc gttcgacggc agccgtccgg ggccgggcgc
     1141 ggtctcgtac gatgcggggg tgccgtcctc gatgtcgtgg ctgctgaccg cctcggtcgc
     1201 gggcctgctt gcgggcctgg ggctggtcct gcgcggcctt gcgggatacc gatccgcgct
     1261 gcgggtcggc gacacgtcga cctcgacgat cagctcggcg gcggccggcg aggtccggat
     1321 cagcggcgtg atcgagccgg ccgagctcac cctggtgtcg ctgctgcaga gcacgccgtg
     1381 cgtgtactac cgcgcctcga tcggcaacgg aggtgacgcc tccctgccgg acagccgcta
     1441 taccgaggca cggtcggtcg gcttccgggt ccgcgacgcg accggcagcc ttcgcgtgtt
     1501 cccgcgcggc gctcgcgtcg acgcaccgct tcggttccac gaccagaccg ggatcgccgg
     1561 cgatgagcct cccggcctgc agctccggac cggccccgcc acgcagacgg ccgagctcga
     1621 cgaggcgacg atgatcgcgg atctcctcac cgtgcacgac ccccgtgcca gaggcgaatc
     1681 cgtggcctgg gacgggctgc ggcaccaggg cggccggctg gagtaccgcg agcagcgtct
     1741 cgagccgggc gacgccgtga cggtcgtcgg gcgggcgctg ccgttcagcg acctcgacga
     1801 cccggcgacg gcggatctcg ggcttggcgg cgacgacctg gacgcggacc cggagatcgc
     1861 tgccgacctg gccgcggcga gggccaccgg cacgctcgcc gacgacgccg gcgaggcctg
     1921 ggggaacgcc gcgatccccg ggttcgggat cggccggccc gtctccccac cggtgatcga
     1981 tccggccgcc actcccctcc cgctggcgac ggccgacgcc gcgacccggg cgaagcgccg
     2041 gttcgagatc gcgcccgacg acctggtcat cgcagcgtcc gacgaggtgc cgctgctgat
     2101 cgcctacgga acgccgggcg cggtcgtggg tcgcgaccgg gcccgtttcg ccgtgggcct
     2161 cctgggcgcc ggcctggcga tcgcctcggc cctggtcctc gccctctcgc tcagtggcgg
     2221 gctcggcgcg tgagcccggc tgccgccgcg gcgctctttg cggtcgccct cgtcgtcgcc
     2281 atcgccgggt acgtggcgct ggcgagctac aacgcgatcg tggcgcttcg ccagcggatc
     2341 gacaaggcct gggcgaacat cgacgtggtg ctcaagcagc gccacgacca gttgccgaac
     2401 ctcgtggccg ccgtccggga cctgatgacg atcgaacgcg acgtgctgac cgaggtgacc
     2461 cgggcgaggg ccg
//
LOCUS       DATDDI010000119         2112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_460306, whole genome shotgun sequence.
ACCESSION   DATDDI010000119 DATDDI010000000
VERSION     DATDDI010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460306"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..190)
                     /locus_tag="VIU37_01730"
     CDS             complement(<1..190)
                     /locus_tag="VIU37_01730"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HEY6012688.1"
                     /translation="MRRPRTLRLAHRGDWRVAPENTLAAFRAALGRPACDGLEFDVRV
                     SADGVPVVCHDDTLERVQG"
     gene            complement(187..957)
                     /locus_tag="VIU37_01735"
     CDS             complement(187..957)
                     /locus_tag="VIU37_01735"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY6012689.1"
                     /translation="MDQLHVATLNIRNLADRWGERLGLLLADMSALQPDLLGLQEVVY
                     PMQQDRLIGAAGEGSYEVLRAWAGRPEYGNSLLVRSTLAAGAADRLDLGLNRSALRTV
                     VGLASGRRVLVAVTHLHHEVDGAAERDDQAQQLIDWLGAAAATDAEIVMGDFNANPAE
                     PAAERMRSHGYRSAFAEANGHEPAVTWPSGLQAPAIDTDGDPACLDYVWVRGAVRVAS
                     ARLVFDRPDAHDLTLFPSDHFGLSAHLVIGASDRTGPE"
     gene            complement(975..>2112)
                     /locus_tag="VIU37_01740"
     CDS             complement(975..>2112)
                     /locus_tag="VIU37_01740"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6012690.1"
                     /translation="RMLAAAGAVATADPTAAVTALRDEAERTAGELAAERHDHDLLLE
                     WLPQGLITIDRDLRIVAANAAAHGFLDRQPGSLMGRTVIEAFLDAQVESIARTVLEQG
                     SAVGEMGRPDPAARRLLIRARRSAAGGAWLVLEDVSELRRLQQIRAEFIDNLSHELRT
                     PLTTVSLLAETLTREAEAAGDVIPLKMRDRIGKIEVETGHLVQMVSELLDLSRIESGG
                     SIGAVDRLDLGQIASDSIERLRLFADRQGVTLRVERHPPLPSVQGDEERIGQVFVNLL
                     HNAVKFSPDGGEVTVSVRAEAGRIVTSIADHGVGIPRAAQARIFERFYKVDRARVRGE
                     TGGTGLGLAIARHIVEQHGGTIWVESTEGVGSTFSFALPIPAAP"
BASE COUNT          286 a          758 c          777 g          291 t
ORIGIN      
        1 ggccctgcac gcgctccagc gtgtcgtcgt ggcagacgac cggcacgccg tcggccgaga
       61 cacgaacgtc gaattcgaga ccgtcacagg ccgggcggcc cagcgccgca cggaacgcgg
      121 cgagcgtgtt ctccggcgcg acgcgccagt cgccgcgatg cgcgagtcgg agggttcggg
      181 ggcgcctcac tcgggccccg tgcggtccga cgcaccgatc acgaggtgcg ccgagagccc
      241 gaagtggtcg ctcgggaaga gagtcaggtc gtgggcatcc ggccggtcga agacgagccg
      301 cgccgacgcg acgcggaccg cgccccggac ccagacgtag tcgagacagg cggggtcgcc
      361 gtccgtgtcg atcgccggcg cctggaggcc ggacggccag gtcaccgccg gctcgtggcc
      421 attcgcctcg gcgaaggccg accggtagcc atgcgatcgc atccgctcgg ccgccggttc
      481 ggcggggttc gcgttgaagt cccccatcac gatctcggcg tcggtcgccg cggcggcacc
      541 cagccagtcg atcagctgct gcgcctggtc gtcgcgctcg gcggcgccgt cgacctcgtg
      601 gtggaggtgg gtgacggcca cgagcacgcg ccggccgctc gcgaggccga cgacggtccg
      661 cagggccgac cggttgaggc ccaggtcgag tcgatccgcc gcgccggcgg ccagcgtcga
      721 tcggacgagc aggctgttgc cgtactccgg gcggccggcc caggctcgca ggacctcata
      781 gctcccctcc cccgccgccc cgatgaggcg gtcctgctgc atcgggtaga cgacctcctg
      841 gagaccgagg aggtcgggct ggagtgcgct catgtccgcc agcagcaggc cgagccgctc
      901 gccccagcga tcggccaggt tccggatgtt gagggtcgcg acgtgcagct ggtccatctc
      961 ggctcccatc tggctcaggg tgcggcgggg atcggcagcg cgaacgagaa ggtcgaaccg
     1021 acgccctcgg tcgactcgac ccagatggtg ccgccgtgct gctcgacgat gtgccgggcg
     1081 atggccagcc ccaggccggt cccgccggtc tcgccccgga cgcgcgcccg gtccaccttg
     1141 tagaagcgct cgaagatccg cgcctgggcg gcccggggga tcccgacgcc gtgatcggcg
     1201 atcgaggtca cgatgcgccc ggcttcggcg cgaaccgaga ccgtcacctc cccgccgtcc
     1261 gggctgaact tcaccgcgtt gtggagcagg ttgacgaaga cctggccgat ccgctcctcg
     1321 tcaccctgca ccgacggcag cggcggatgg cgttcgaccc gcagggtgac gccctggcgg
     1381 tcggcgaaga gccggagccg ttcgatcgag tcgctcgcga tctggccgag gtcgagccgg
     1441 tcgacggcgc cgatggaccc gccgctctcg atcctcgaca ggtcgagcag ctcactgacc
     1501 atctggacga ggtggccggt ctccacttcg atcttgccga tccggtcgcg catcttgagc
     1561 gggatgacgt cgccggcggc ctcggcctcg cgggtgagtg tctcggcgag caggctgacc
     1621 gtcgtcagcg gggtccgcag ctcgtgcgac aggttgtcga tgaactcggc ccggatctgc
     1681 tggagccggc ggagctccga gacgtcctcg aggacgagcc acgcgccgcc ggcagcggac
     1741 cggcgcgccc ggatcagcag ccgtcgcgcg gcgggatccg gccggcccat ctcgccgacc
     1801 gccgagccct gctcgagcac cgtccgagca atcgactcca cctgggcgtc gaggaacgct
     1861 tcgatcacgg tccggcccat caggctcccg ggctggcgat cgaggaagcc gtgcgcggcc
     1921 gcgttcgcgg cgacgatccg caggtcgcga tcgatcgtga tcagaccctg gggtagccat
     1981 tcgagcagga gatcgtggtc gtgccgctcg gcggccagct ccccggccgt gcgttcggct
     2041 tcgtcacgca gcgcggtgac ggcggcggtc gggtcggccg tcgccacggc gcccgcggcg
     2101 gcgagcatcc gg
//
LOCUS       DATDDI010000120         1865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_730967, whole genome shotgun sequence.
ACCESSION   DATDDI010000120 DATDDI010000000
VERSION     DATDDI010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730967"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1835)
                     /locus_tag="VIU37_01745"
     CDS             complement(<1..1835)
                     /locus_tag="VIU37_01745"
                     /inference="COORDINATES: protein motif:HMM:NF017930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY6012691.1"
                     /translation="MIAPYATGLAAMVDPEAAIRNFERLGRAGARGPYGFREALDYTP
                     RRLPEGATVAPVMSYMAHHQGMLLVAIANVLTGSAMVDRFHADPLVRATELLLQERMP
                     RDVLVARPRAEEVHSRADVRDLVPPVLRRFTSPHDAVPRTHLLSNGRYAVMVTAAGSG
                     YSRWGDLAVTRWREDVTRDAWGSYLFLRDRHSGAVWSVGHQPSGTEADTYEVEYAEDH
                     AEFRRRDGPIATRLTIVVSTEHDAEIRRVSLTNLGSQPREIEITSYAEIVLAPQAADV
                     AHPAFQNLFVQTEFAPDLNALVATRRPRYATDRQVWAAHVAAVEGELPGVIQYETDRA
                     RFVGRGRLSGAAAAVTDGRPLSNTVGAVLDPIFSLRLRISLAAGATAHAVFSTVVAES
                     RDDVLDLADKYRDSATFERAATLAWTQAQVQLQHLGIDQDEALLFQRLANRVIYSDPS
                     LRPPPSLLAQNHRGVSGLWAHGISGDLPIVLVRIDEPEDVDIVRQLLRAHEYWRLKLL
                     EVDLVILNEHGPTYADNLQDVLETVVRTSQSALGQEGQGRGRVYILRGDQLSTEDRTM
                     LQSAARAVLLSRRGSLADQVIRLERPERAVTSLPPRPATPSAATNG"
BASE COUNT          255 a          646 c          701 g          263 t
ORIGIN      
        1 ccgttcgtgg ccgccgacgg cgtggcgggt cgcggcggca gggacgtcac cgctcgctcg
       61 ggacgctcga gccggatgac ctggtcggcg agactgcccc gacggctcag caggaccgcg
      121 cgggccgccg actggagcat cgtccggtcc tcggtcgaga gctggtcgcc gcgcaggatg
      181 tagacgcgcc cgcgtccctg gccttcctgg ccgagcgcgg actggctcgt ccggacgacg
      241 gtctcgagga cgtcctggag gttgtcggcg taggtcgggc cgtgctcgtt gaggatgacc
      301 aggtcgacct cgaggagctt caggcgccag tactcgtggg cccggaggag ctggcgcacg
      361 atgtcgacgt cttcgggctc gtcgatccgg accaggacga tcgggaggtc gccggagatg
      421 ccgtgcgccc acagcccgga cacgccgcga tggttctgcg cgagcaggct cggcggcggc
      481 cggagcgacg ggtccgagta gatgacccga ttggccaggc gctggaagag cagggcttcg
      541 tcctggtcga tccccaggtg ctgcagctgg acctgggcct gggtccaggc gagggtggcc
      601 gcgcgctcga aggtcgccga gtcgcgatac ttgtcggcga ggtcgagcac gtcgtcccgc
      661 gattcggcca cgaccgtcga gaagacggcg tgcgcggtgg cgcccgcggc gagcgagatc
      721 cgcaggcgca ggctgaagat cggatcgagc acggcaccga ccgtgttcga gagcggccgg
      781 ccgtccgtca ccgccgccgc cgcgcccgac agccggccgc gtcccacgaa ccgagctcga
      841 tcggtctcgt actggatcac gccgggcagc tcgccttcga ccgcggccac gtgcgcggcc
      901 cagacctggc gatccgtcgc atacctcggg cggcgggtgg cgacgagcgc gttcaggtcg
      961 ggcgcgaact cggtctggac gaagaggttc tggaaggcgg gatgggcgac gtccgcggcc
     1021 tgcggggcca gcacgatctc cgcatacgag gtgatctcga tctcgcgcgg ctgggagccg
     1081 aggttggtca gcgacacccg gcggatctcg gcgtcgtgct cggtcgagac cacgatcgtg
     1141 aggcgcgtcg cgatcggccc gtcccggcga cggaactcgg cgtggtcctc cgcgtattcg
     1201 acctcgtagg tgtccgcctc ggtgccgctc ggctggtgcc cgaccgacca gaccgcgccg
     1261 ctgtgccgat cgcgcaggaa gagatagctg ccccaggcgt cccgcgtgac gtcctcgcgc
     1321 cagcgcgtga cggcgagatc gccccagcgg ctgtagcccg atcccgcggc cgtcaccatc
     1381 acggcgtacc ggccgttgga caggaggtgg gtccggggca cggcgtcgtg cggtgacgtg
     1441 aaccgccgga gcacgggtgg gaccaggtcc cggacgtcgg cgcggctgtg gacctcctcc
     1501 gcccgcggcc gggcgaccag cacgtcacgt ggcatccgct cctggaggag gagctccgtc
     1561 gcccgcacca gcggatcggc gtgaaaccga tcgaccatcg ccgacccggt caggacgttg
     1621 gcgatggcca ccagcagcat cccctggtgg tgcgccatgt agctcatgac cggcgccacg
     1681 gtcgcgccct ccggcagccg gcgaggcgtg tagtcgaggg cctcccggaa cccgtacggg
     1741 cccctcgcgc cggcccggcc cagacgctcg aagttccgga tggcggcctc cgggtccacc
     1801 atggcggcga ggcccgtcgc gtagggcgcg atcaccaggt tctcgctgag tccccgcttg
     1861 aggcc
//
LOCUS       DATDDI010000121         1517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_730976, whole genome shotgun sequence.
ACCESSION   DATDDI010000121 DATDDI010000000
VERSION     DATDDI010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730976"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1517
                     /locus_tag="VIU37_01750"
     CDS             <1..>1517
                     /locus_tag="VIU37_01750"
                     /inference="COORDINATES: protein motif:HMM:NF019156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012692.1"
                     /translation="VSVGMITHDSSYIFEPGYPTSDERLVNLRPVNRGEAYAADVTYG
                     TNNEFGFDYLRDNMVLELDQRVQRGRSFAIVDEVDNILIDEARTPLIISGQAEESADL
                     YFTFARLVPRLKERPEGAEEGGDYVIDLKDKAVSSTEEGISKMEGWLGVENMYDADPR
                     LARHFEQALRAHALFKRDRDYIVKDGEIVIVDEFTGRQMPGRRWSEGLHQAIEAKEGL
                     RVQRESVTLATITFQNYFRLYDKLSGMTGTAMTEAEELHKIYQLEVVAIPTHREMIRE
                     DFPDYVFRDEPAKFNALIDEIVEMQEIGRPVLVGTISVEKSEMLSEMLKRRGIRHETL
                     NAKFHEKESGVVAQAGRTGAVTIATNMAGRGTDILLGGNPAGLASELLHKRGLNPAEV
                     DKATYDAALAEAKVVTNEDHERVVGVGGLHIIGTERHDSRRIDNQLRGRAGRQGDPGS
                     SRFYLSLDDDLMKRFASDRVAGLMERLGLDEDVAIESKLVSRTIESAQSRVEGFN"
BASE COUNT          285 a          516 c          510 g          206 t
ORIGIN      
        1 gtcagcgtcg ggatgatcac ccacgactcg tcgtacatct tcgagccggg ttacccgacc
       61 agcgacgagc ggctcgtcaa cctgcgcccg gtcaaccgtg gggaggcgta cgccgcggac
      121 gtcacctacg ggaccaacaa cgagttcggc ttcgactacc tgcgcgacaa catggtcctc
      181 gagctcgacc agcgcgtgca gcgaggccgc agcttcgcga tcgtcgacga ggtcgacaac
      241 atcctcatcg acgaggcccg gacgccgctg atcatcagcg gccaggccga ggaatcggcg
      301 gacctctact tcaccttcgc ccggttggtg ccgcgcctca aggagcgccc cgagggtgcg
      361 gaggagggcg gcgactacgt catcgacctc aaggacaagg ccgtctcctc gaccgaagag
      421 ggcatctcca agatggaggg ctggctcggc gtcgagaaca tgtacgacgc cgacccgcgg
      481 ctggcccgcc acttcgagca ggcgctgcgg gcgcacgccc tgttcaagcg cgaccgcgac
      541 tacatcgtca aggacggcga gatcgtcatc gtcgacgagt tcaccggccg ccagatgccc
      601 ggccggcgct ggagcgaagg actgcaccag gcgatcgagg cgaaggaggg cctgcgcgtc
      661 cagcgcgaga gcgtgacgct ggccacgatc accttccaga actacttccg gctgtacgac
      721 aagctgtcgg gcatgaccgg cacggccatg accgaggccg aggagctcca caagatctac
      781 cagctcgagg tggtcgccat cccgacgcac cgcgagatga tccgcgagga cttcccggac
      841 tacgtcttcc gcgatgagcc ggccaagttc aacgcgctga tcgacgagat cgtcgagatg
      901 caggagatcg ggcggccggt cctcgtcggc accatctcgg tcgagaagtc cgagatgctg
      961 tcggagatgc tcaagcgacg gggcatcagg cacgagaccc tcaacgccaa gttccacgag
     1021 aaggaatcgg gcgtcgtcgc ccaggccggg cggaccgggg ccgtgacgat cgccaccaac
     1081 atggccggcc gcggcaccga catcctgctc ggcggcaacc ccgccgggct cgcctcggag
     1141 ctcctccaca agcgtggcct caacccggcg gaggtggaca aggcgaccta cgacgcggcg
     1201 ctcgccgagg ccaaggtcgt caccaacgag gaccacgagc gcgtggtcgg cgtcggcggc
     1261 ctccacatca tcggcacgga gcgacacgac tcgcggcgga tcgacaacca gctgcgcggc
     1321 cgggccgggc ggcagggtga tccggggtcg tcgcggttct acctctcgct cgacgacgac
     1381 ctgatgaagc ggttcgccag cgaccgggtc gccgggctca tggagcggct cgggctcgac
     1441 gaggacgtcg cgatcgaatc gaagctcgtg tcgcgcacga tcgagtcggc ccagagccgc
     1501 gtcgagggct tcaactt
//
LOCUS       DATDDI010000122         3035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_189894, whole genome shotgun sequence.
ACCESSION   DATDDI010000122 DATDDI010000000
VERSION     DATDDI010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189894"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..677
                     /locus_tag="VIU37_01755"
     CDS             <1..677
                     /locus_tag="VIU37_01755"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6012693.1"
                     /translation="QEGPRVAAVVEAARRHLPVIVVDDGSTDETAARAEAAGATVIRQ
                     RPNAGKGAALRAGFARALEQGAGAVVTLDGDGQHDPDEIPAFLGTFERSGAQLVIGRR
                     DFGAMPFVRRASNTLGRMAISVAVGRDIPDNQSGYRLVGSRLLPELLDSREAGFEFEV
                     EMIARAIALGLPIAWVPIRTIYAGESSHIRPWTHFTNFVRVARDARRIVRSTADSGSD
                     ARTRRS"
     gene            complement(672..2678)
                     /locus_tag="VIU37_01760"
     CDS             complement(672..2678)
                     /locus_tag="VIU37_01760"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6012694.1"
                     /translation="MIPSRRRPAGPAGRASLVGRRPADRRIRVEAPGSPYFRYAGPGR
                     LTARPAASAPTGSRGRLVVGARRFLFGRPLASGEELEERLPKVKALSTFSSDNLSSVA
                     YATELIMFTLVAAGSSAFWLVMPISLLIVTIFVIIVISYRQTIRAYPNGGGSYIVAKE
                     NLGTGPALIAAAALLTDYVLTVSVSVAAGVLAITSAFPSLEPLRVPLGVAAILFVMLI
                     NLRGMRESGTIFAAPTYIFLVSTLGLIGLGLLQTLLGSPPHVTGVTPAVIAPESLGAL
                     LLMRAFADGCSAITGVEAVSNGVPAFKPPEWRNARTTLTVMGALVATMFLGLSYLAGV
                     AGATPSDHESVVSQVGRAVFGTGPVYYVLQLATTGLLILAANTSFADFPRLSSILARD
                     GYMPTRFAFRGERLAFSAGIVVLALIAIAVLVAFGGLVTALIPLYAIGVFTSVTLSQA
                     GMVRHWLRDRDAGWRRSAAINGVGAVATAIVTLIFAVAKFALGAWLIIVIIPILVAAM
                     VFVHRQYERRRIEVHVRPETVIGPPTRRQRVVIPVPEVTRDVVQAVKFGRTMSTDVTA
                     VHVTDDLERGEELRARFERQVPGTGFVIVESPFRQLVQPLVRYLEYVADRSAGEIVVV
                     LLPEYVPRHWWERLLYNENAHRIRDALLGRANVLVADVPFRRDL"
     gene            complement(2681..2938)
                     /locus_tag="VIU37_01765"
     CDS             complement(2681..2938)
                     /locus_tag="VIU37_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012695.1"
                     /translation="MEPSPILPFPVASIERLERDLDEIDAAIAMVVAGVATRIRLIGL
                     SAAVEAAPQGLARAQLAGVTFAVDRQADRQPAIIIGPLEQR"
BASE COUNT          496 a         1049 c         1092 g          398 t
ORIGIN      
        1 accaggaggg cccgcgggtc gccgcggtcg tggaggccgc gcgtcgccat ctgccggtca
       61 tcgtcgtcga cgacggatcg accgacgaga cggccgcccg ggcggaggcc gcaggcgcga
      121 cggtgatccg gcagcggccc aatgccggca agggcgccgc actgcgggcg ggctttgccc
      181 gggcgctcga gcagggcgcg ggcgcggtcg tcacgcttga cggtgacggc cagcacgacc
      241 cggacgagat ccccgcgttc ctcgggacgt tcgaacgctc gggggcacaa ctcgtcatcg
      301 gccggcgcga cttcggggcg atgccgttcg tgcgtcgagc ctccaacacg ctcggccgga
      361 tggcgatctc ggtggcggtc ggacgggaca tcccggacaa ccagtcgggc taccgattgg
      421 tcggttcgag gctgctgccg gagctcctcg acagccgcga ggccggcttc gagttcgagg
      481 tcgagatgat cgcccgggcc atcgcgctcg ggctgccgat cgcctgggtg ccgatccgga
      541 cgatctacgc cggcgagtcc agccacatcc gaccgtggac ccatttcacg aacttcgtgc
      601 gtgtcgcccg cgacgcacgt cgcatcgtgc gatcgaccgc ggattccggg agtgacgccc
      661 gaacccggcg gtcataggtc tcgccggaac gggacatcgg ccaccaggac gttcgcgcga
      721 ccgagcagcg catcccggat ccgatgcgcg ttctcgttgt agagcaggcg ttcccaccaa
      781 tgccggggca cgtattcggg gagcagcacc acgacgatct cgcccgcgct ccgatccgcc
      841 acgtattcga gatagcggac cagcggctgc acgagctggc ggaacggcga ctcgacgatg
      901 acgaagcccg tgccggggac ctggcgctcg aagcgcgctc gaagctcctc tccccgttcg
      961 aggtcgtccg tcacgtggac ggcggtgacg tcggtcgaca tcgtccgccc gaacttcacg
     1021 gcctgcacca cgtcgcgggt gacttccggc acggggatga ccacgcgctg gcgacgggtg
     1081 ggcggcccga tgacggtctc cgggcggacg tggacctcga tccgccggcg ctcgtactgg
     1141 cgatggacga agaccatggc ggcgaccagg atcgggatga tcacgatgat cagccacgcc
     1201 cccagcgcga actttgcgac ggcgaagatg agggtcacga tcgccgtggc gaccgcgccg
     1261 accccgttga tggccgcgct gcgccgccag ccggcgtcac ggtcccggag ccagtggcgg
     1321 accatgccgg cctgcgacaa cgtgaccgac gtgaacacgc cgatggcgta gagcgggatc
     1381 agggccgtca ccaggccgcc gaatgcgacc aggacggcga tcgcgatcag ggccagcacg
     1441 acgatgccgg cgctgaaggc gagccgctct ccgcggaacg cgaaccgagt cggcatgtag
     1501 ccgtcccggg cgaggatcga cgagagccgc ggaaagtcgg cgaagctcgt gttcgccgcg
     1561 aggatcagca gcccggtcgt cgcgagctgc agcacgtagt agacgggccc ggtgccgaac
     1621 acggcccgcc cgacctgcga cacgaccgac tcgtggtccg acggggtggc gcctgcgacg
     1681 ccggcgagat acgagagtcc caggaacatc gtcgccacga gggcgcccat caccgtgagc
     1741 gtggttcggg cattgcgcca ctcgggcggc ttgaaggcgg ggacgccgtt ggacaccgcc
     1801 tcgacgccgg tgatcgcgct gcagccgtcc gcgaaggccc gcatcagcag gagcgcgccg
     1861 agcgactcgg gagcgatgac tgccggcgtg accccggtca cgtgcggcgg gctgcccagg
     1921 agggtctgca gcagcccgag cccgatcaac ccgagcgtcg agaccaggaa gatgtaggtc
     1981 ggggcggcga agatcgtgcc gctctcgcgc atgccgcgca ggttgatcag catcacgaac
     2041 aggatcgcgg ccacgcccag cgggacgcgc agcggctcca gcgacggaaa cgccgaggtg
     2101 atcgccagga ccccggccgc gacgctgacc gacaccgtca gcacgtagtc ggtgagcagg
     2161 gccgccgcgg cgatcagcgc gggtccggtg ccgaggttct ccttggccac gatgtagctg
     2221 ccgccgccgt tggggtaggc ccggatggtc tggcgatacg agatgacgat gatcacgaag
     2281 atcgtcacga tcaggagcga gatcggcatc accagccaga acgcgctcga gccggccgcc
     2341 accagcgtga acatgatcag ctccgtcgcg tacgccaccg agctgaggtt gtcgctcgag
     2401 aaggtggaca gggccttgac cttgggcagt cgctcctcga gctcctcgcc actggccagc
     2461 ggcctgccga acaggaaccg gcgtgccccg acgaccagcc gccctctcga tccggtcggc
     2521 gcgctcgccg ccggccgcgc cgtcagccga cccgggcccg cgtaccggaa gtagggagac
     2581 cctggggcct cgacccggat gcggcggtcg gccggtcgcc ggccgaccag gcttgcgcgg
     2641 ccggctggtc cagccggccg ccgtcgtgat gggatcacga ctaccgctgt tcgagcgggc
     2701 cgatgatgat cgcgggctgg cgatccgcct gccgatccac ggcaaaggtg acgcccgcga
     2761 gctgggcgcg ggcgaggccc tgcggggcgg cctcaactgc ggcggaaagc ccgatcagcc
     2821 ggatccgggt ggcgacgccg gcgacgacca tggcgatcgc ggcgtcgatc tcgtccaggt
     2881 ctcgctcgag ccgttcgatc gaggcaacag ggaagggcag gatcgggctg ggttccatgc
     2941 cctcaccgta tcgccggctt ccaagaggcc acgacccctg ggtgtgccct cgccgctcaa
     3001 caagcgctca agagcgcccg acgccgcgct caaca
//
LOCUS       DATDDI010000123         4990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_85813, whole genome shotgun sequence.
ACCESSION   DATDDI010000123 DATDDI010000000
VERSION     DATDDI010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4990
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85813"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1247)
                     /locus_tag="VIU37_01770"
     CDS             complement(<1..1247)
                     /locus_tag="VIU37_01770"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012696.1"
                     /translation="MAPPHAPEDAGLAASLRGLDANGRLLFAMRILRMFGYGFLAVVL
                     VLYLAALGLDPLTIGIVLTLTLVGDTLISLWLTTNADRIGRRRVLVAGALLMAGAGLV
                     FAATSWPPLLIVAATIGVISPTGNEVGPFLAVEQAGLSQTTSDARRTATFAWYNLAGY
                     VATATGALGAGIVSQVLIDGGLARVDAYRAIVIGYALIGLAMAAGFSRLPAAIEAPPR
                     VADDDGIRRRFGLGRSRSIVLRLSALFSIDAFAGGFIPLSLMAYWFHLHYGVEPGLLG
                     TIFFFANLLSAISSLSAARIARSIGLINTMVFTHIPSNVLLILVPLMPSLRLAILVLL
                     IRFSISQMDVPARQSYTMAMVAPEERSAAAGITGVARTTGAAIAPFFAGLLFSKPALI
                     NYPFFIAGALKIVYDLLLYRAFI"
     gene            1315..1539
                     /locus_tag="VIU37_01775"
     CDS             1315..1539
                     /locus_tag="VIU37_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012697.1"
                     /translation="MTADRHAHDAPGHEGAVAHHLPDDHGEDHGHDDHAHADDALGPI
                     DTAAWLAGAAGVVVGLVIAAAFALSTGAIG"
     gene            complement(1565..3271)
                     /locus_tag="VIU37_01780"
     CDS             complement(1565..3271)
                     /locus_tag="VIU37_01780"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF010030.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEY6012698.1"
                     /translation="MSFPSDLEIARSVTPRPIVDVARDLGITDGELELYGPTKAKVTL
                     EAIRRLEAERPRGKYVVVTAITPTPLGEGKSTTSVGLAQGLNHIGRRAAVNIRQPSLG
                     PVFGIKGGAAGGGYSQVIPMEDFNLHLTGDVHAIGAAHNLAGAFLDNSLHHKNPLGID
                     PRGILWPRVLDISDRALRHVVIGLGGREDGVPRETEFVITVASEVMAVLALATDLQDL
                     RARLGRIVMATTMDGAPVTAEALGVAGAMTVLLRDAIKPNLLQTLEGGPAFVHAGPFA
                     NIAHGNNSIIADRLALVTNDIVCTEAGFGADMGAEKFFDIKCRASGLAPDAAVVVATV
                     RALKMHGGVGKIVAGKPLDPALLEENVEAVRRGAENLARQIENVRIFGVPAVVAINSF
                     PTDTPGEVEAIREVSLAAGARDAVVATHFVDGGKGAAALAEAVWAACESGEASFRLLY
                     PDDLPLADKIDAIATRVYGADGVDYLPAAAKSLRQFEELGYGHLPICMAKTQYSLSHD
                     AALKGRPTGFRVPIREVRLSAGAGFITPLCGEMRTMPGLPSRPGGENIDIDADGNVVG
                     LF"
     gene            complement(3332..4231)
                     /locus_tag="VIU37_01785"
     CDS             complement(3332..4231)
                     /locus_tag="VIU37_01785"
                     /inference="COORDINATES: protein motif:HMM:NF014881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HEY6012699.1"
                     /translation="MTASGARLLEGGAIAEEIRTAVAEDVSTFTATRGRAPGLRVVIV
                     GRDAPSTVYLERILRGCAKVGIDAGFVELEGEATEVRVIGALRELNADATVDGVIVQM
                     PLPPTIRLRTIVDAIDPAKDIDGIHPLNAGLLRLGYDGFLPATAHAAVEILRRSGIEI
                     EGRDAVVIGRSAVVGMPAAFLLVREDATVTVCHSRTRDLAGHVRRAEIVVVAAGVPGL
                     VTGAMLRPGAVVVDVGINVVDGRIVGDVDFESARAVASAITPVPGGVGPLTNALLLTH
                     LIRAAERQWPLQSPVAVPALERP"
     gene            complement(4236..4913)
                     /locus_tag="VIU37_01790"
     CDS             complement(4236..4913)
                     /locus_tag="VIU37_01790"
                     /inference="COORDINATES: protein motif:HMM:NF016825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclodeaminase/cyclohydrolase family protein"
                     /protein_id="HEY6012700.1"
                     /translation="MEPSTGSRFRDLTLDQFVGELASGAPVPGGGSASAVAASLAAGL
                     VAMVASLSMDRPKYAQHAELLAWAAGTGHELADRFLAIADDDALAYAGYALAMKLPRE
                     TDEQREIRAAALRTAARHAAEVPLVAVAACVELVGAAEALAGRSNQNASSDLNVAALL
                     GEAAARGAAANVLVNLPSVGDDDYMTTTMERVDELLHEVERLVASTRETVGGGEPREP
                     VPAPARA"
BASE COUNT          768 a         1773 c         1788 g          661 t
ORIGIN      
        1 tcgatgaacg cgcgatagag gagcaggtcg taaacgatct tcagcgctcc cgcgataaag
       61 aacggatagt tgatgagggc gggcttcgag aagaggaggc cggcgaaaaa cggagcgatg
      121 gcagcgcccg ttgtccgcgc cacgccggtg atgcccgccg cggccgagcg ctcctcggga
      181 gcaaccatcg ccatcgtgta cgactgcctg gccggcacat ccatttggga gatgctgaag
      241 cgaatgagca aaaccaggat cgccaggcga aggctgggca tcagcggcac caggatgagc
      301 agcacgttcg acgggatgtg cgtgaagacc atggtgttga tcaacccgat gctcctcgcg
      361 atccgggccg ccgacaacga cgagatcgcg gacagcaggt tcgcgaagaa gaagatcgtg
      421 ccgagcaggc ccggctccac gccgtagtgg aggtggaacc agtaggccat caggctgagc
      481 gggatgaagc cgccggcgaa ggcgtcgatc gagaagagcg ccgacagccg caacacgatc
      541 gatcgcgaac gcccgagccc gaaccggcgc cggatgccgt cgtcgtcggc gaccctcggc
      601 ggcgcctcga tggcggcggg caggcggctg aagccggccg ccatcgccaa accgatcagc
      661 gcgtagccga tcacgatcgc ccggtaggca tccaccctgg cgagcccgcc atcgatcagc
      721 acctggctca cgatccccgc cccgagcgcc ccggtcgcgg tcgccacgta gccggccagg
      781 ttgtaccagg cgaatgtcgc ggtccggcgc gcgtccgacg tcgtctgcga caggcccgcc
      841 tgctcgacgg ccaggaacgg ccccacctcg ttgcccgtcg gcgagatcac cccgatcgtg
      901 gcggccacga tcagcagggg cggccagctc gtcgcggcaa agaccagccc ggcaccggcc
      961 atcaggagcg ccccggcgac gaggacgcga cgacgcccga tccggtcggc gttcgtcgtc
     1021 agccacagcg agatcagcgt gtcgccgacg agggtcaggg tcaggacgat cccgatcgtg
     1081 agcgggtcga gcccgagtgc cgccaggtac aggacgagca cgacggccag gaacccgtac
     1141 ccgaacatcc ggaggatgcg catcgcgaac agcagccggc cgttcgcgtc gagcccgcgg
     1201 aggctggcgg ccaggccggc atcctcggga gcgtggggcg gggccatggg ggcgagtcta
     1261 cgggctggca gggcgacgtg gcggcctgcg ggagcgtctg cgagaatgcc ggccatgact
     1321 gccgatcgcc atgcccatga cgcacccggc cacgagggtg cggtcgccca tcacctgccc
     1381 gacgaccacg gcgaggacca cggccacgac gaccatgccc acgctgacga tgcgctcggc
     1441 ccgatcgaca ccgcggcctg gctggccggc gcggccgggg tcgtcgtcgg cctggtgatc
     1501 gcggccgcgt tcgccctctc gacgggcgcc atcggctagg cgcagttccg ccgacgggcc
     1561 ggcgctagaa gaggccgacg acgttcccgt ccgcgtcgat atcgatgttc tcgccgcccg
     1621 ggcgggaggg cagcccgggc atcgtccgca tctccccgca cagcggcgtg atgaaccccg
     1681 cgccggccga caggcggacc tcgcggatcg ggaccctgaa gccggtcgga cgccccttca
     1741 gcgccgcatc gtggctcagc gagtactggg tcttggccat gcagatcggc aggtggccgt
     1801 agcccagctc ctcgaactgc cggagcgact tggccgccgc cggcaggtag tccaccccgt
     1861 cggcgccgta gacgcgggtg gcgatcgcgt cgatcttgtc cgcgaggggc aggtcatccg
     1921 ggtagagcag ccggaaggat gcctcgccgc tctcgcaggc ggcccagacc gcctcggcca
     1981 gcgccgccgc ccccttgcca ccgtcgacga agtgcgtcgc caccaccgcg tcccgggcgc
     2041 cggcggccag cgacacctcg cggatcgcct cgacctcccc gggcgtgtcg gtcgggaagg
     2101 aattgatggc cacgaccgcg ggaacgccga agatgcggac gttctcgatc tgcctcgcga
     2161 ggttctccgc gccacgccgg accgcctcga cgttctcctc gagcagggcc ggatcgagcg
     2221 gcttgccggc gacgatcttg ccgaccccgc cgtgcatctt gagcgcccgg accgtggcga
     2281 ccaccacggc cgcatccggc gcgagacccg acgcgcggca cttgatgtcg aagaacttct
     2341 cggcgcccat gtcggcgccg aagcccgcct cggtgcagac gatgtcgttg gtgaccagcg
     2401 cgagccgatc ggcgatgatc gagttgttgc cgtgggcgat gttcgcgaac gggccggcgt
     2461 gaacgaaggc ggggccgccc tcgagcgtct ggagcaggtt cggcttgatc gcgtcgcgga
     2521 gcaggacggt catcgccccg gccacgccga gggcctcggc ggtcaccggc gccccgtcca
     2581 tcgtcgtcgc catgacgatc cggccgagcc gggcgcgcag gtcctgcagg tcggtcgcga
     2641 gcgccaggac cgccatcacc tcggaggcga ccgtgatgac gaactcggtc tcgcgcggga
     2701 cgccgtcctc gcggccgccg aggccgatca ccacgtgtcg gagggcgcgg tcgctgatgt
     2761 cgaggacgcg cggccagagg atcccgcgcg gatcgatgcc cagcgggttc ttgtggtgga
     2821 ggctgttgtc gaggaacgcg ccggccaggt tgtgcgcggc cccgatcgcg tggacgtcgc
     2881 ccgtcaggtg gaggttgaag tcctccatcg ggatgacctg gctgtagccg ccaccggcgg
     2941 cgccgccctt gatcccgaag acgggaccga gcgacggctg gcggatgttg acggcggcgc
     3001 gccggccgat gtggttgaga ccctgcgcga gcccgaccga ggtcgtcgac ttgccctcgc
     3061 cgagcggggt gggggtgatc gccgtgacga ccacgtactt gccgcgcggt cgctccgcct
     3121 cgaggcggcg gatcgcctcc agcgtcacct tggccttggt cggcccgtac agctcgagct
     3181 cgccatcggt gatgccgagg tcccgcgcga cgtccacgat cggccgcggc gtgacggatc
     3241 gggcgatctc gagatcggat gggaagctca tcggtctcct cggctggtca gggacgggcg
     3301 acgtggacgg gtgggagggg tggcgagccg gtcagggccg ctcgagcgcg ggcacggcca
     3361 cgggcgactg gagcggccac tggcgctcgg cggcgcgaat gaggtgggtc agcagcaggg
     3421 cgttggtcag cgggccgacg ccaccgggca ccggggtgat cgccgaggcc accgcgcgcg
     3481 cagattcgaa gtccacgtcc cccacgatcc ggccgtcgac cacgttgatg ccgacgtcca
     3541 ccacgacggc gcccggccgg agcatcgccc cggtcaccag gcccggcacg cccgccgcga
     3601 ccaccacgat ctcggcccgt cggacgtggc cggcaaggtc gcgagtccgc gagtggcaga
     3661 cggtgacggt ggcgtcctcc cggaccagca ggaacgccgc cggcatcccg acgaccgccg
     3721 agcgcccgat cacgaccgca tcccgaccct cgatctcgat ccccgaccga cgcaggatct
     3781 ccaccgccgc gtgggccgtg gccggcagga acccgtcgta gccgaggcgc agcagcccgg
     3841 cattgagcgg gtggatgccg tcgatgtcct tggccggatc gatcgcatcg acgatggtcc
     3901 gcaggcggat ggtgggcggc agcggcatct ggacgatgac cccgtcgacg gtggcgtcgg
     3961 cgttgagctc tcgcagcgcg ccgatcaccc gtacttcggt ggcctccccc tcgagctcga
     4021 cgaacccggc gtcgatcccg accttggcgc agccgcgcag gatccgctcg agatagaccg
     4081 tcgagggtgc gtcgcgaccc acgatcacca cccggagacc gggcgctcgc ccgcgggtcg
     4141 cggtgaaggt cgagacatcc tcggcgacgg cggtgcggat ctcctcggcg atcgccccgc
     4201 cctcgagcag ccgggcgccc gaggccgtca tcgcgtcagg ctcgggccgg tgccgggacc
     4261 ggctcgcgcg gttcgccgcc gccgaccgtt tcccgagtcg atgccaccag ccgctcgacc
     4321 tcgtggagca gctcgtcgac gcgctccatc gtggtcgtca tgtagtcgtc gtcgccgacg
     4381 ctgggaaggt tgaccagcac gttcgcggcg gcaccgcgag ccgccgcctc gccgagcagg
     4441 gcggccacgt tcagatcgct cgaagcattc tggttgctgc gcccggcaag cgcctccgcg
     4501 gcgccgacca gctccacgca cgccgccacg gcgacgagcg ggacctcggc cgcatggcgc
     4561 gcggcggtgc gcaacgcggc tgcccggatc tctcgctgct cgtcggtctc tcgcggcagc
     4621 ttcatcgcga gcgcatatcc ggcataggcc agggcgtcgt cgtcggcgat cgccaggaac
     4681 cgatcggcga gctcgtggcc ggtgccggcc gcccacgcga ggagctcggc atgctgcgcg
     4741 tacttgggcc ggtccatcga caacgaggcg accatcgcga cgagacccgc agcgaggctc
     4801 gccgctaccg ccgaggcgct cccgccacct gggaccggtg cgcccgatgc cagctccccg
     4861 acgaactgat cgagcgtcag atcacgaaag cgcgacccgg tagatggctc cacgcctgaa
     4921 ttgtacggat gcgatcgagc cccggccgcc ccggttgcgg tatgcgatca ggaacccgtc
     4981 gcccggcttg
//
LOCUS       DATDDI010000124         5341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_231526, whole genome shotgun sequence.
ACCESSION   DATDDI010000124 DATDDI010000000
VERSION     DATDDI010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5341
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231526"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1585
                     /locus_tag="VIU37_01795"
     CDS             <1..1585
                     /locus_tag="VIU37_01795"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HEY6012701.1"
                     /translation="DGAIRTLAPDARREVGRRLEAVPADAPTLPGATAFRLHDTYGFP
                     FELTEEYLAEFGIRVDRAGFDVAMAEQRSRSRSGKKAELAKHAELAGLYGAIQARHGD
                     TRFLGYEATTAEGRVIAILRDGMEYDELTGHGEAEVVLDQTPFYGEGGGQVGDRGVIR
                     EPGAGSELFTVTDTQKPVGGLIVHRGRLHGRLRVGETVEAAVDPERRAHTMRNHTGTH
                     LLHRALRNVVGERARQAGSLVTPDYLRFDFPFDRGLTGDELRAIEDEVHRIVREDRPV
                     TIAFMGMAEAIQGGADAFFDEKYGETVRTVRVQDYSFELCGGTHCRASGQIGGFLITG
                     ERSIGSGMRRIEAVTGAAADTLVRERFALLERAAGAVGAQTLDAVPERIATLQSDLQE
                     ARRRLKAGGAASGVPKPGELVARAAEVVPGVRLVAAAVPYESMEALKGAARDVSGTLG
                     SGVVALALDAPEPQVFVTVSEDLVARGISAGDLVSAAMPSIDGRGGGRPGMAQGRGTR
                     RDGLEAALAAVRARLETGD"
     gene            1585..2847
                     /locus_tag="VIU37_01800"
     CDS             1585..2847
                     /locus_tag="VIU37_01800"
                     /inference="COORDINATES: protein motif:HMM:NF025806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division FtsA domain-containing protein"
                     /protein_id="HEY6012702.1"
                     /translation="MAFWRRIWQRDGEEALAACTALDVGTEFAKALVFDIDGDGHGTV
                     RGVGRKRQGLSHMQSGTVADIAAVVDNCAVALQEAEEMAGFRPTQVVIGIAGELVKGF
                     TTTHSQERKKPDQPITEGELQKLIDAVQREALQEAERAITWETGLPHVDVRLVHAAVT
                     GASIDGYALTNPVGFQGRHVKIGIFNAFAPLVHLGALQSVASQLDLELLEIVAEPYAV
                     ARVLGSDHIRQAGALFVDVGGGTTDVALVRKGGIEGTRMFALGGRAFTKSLADRLDLP
                     FPRAESLKVDYARGLAVESAEDVARVIADDVRVWAAGVELVMEELSAGDLLPGRIFLC
                     GGGSRLPEIRAALADAAFWQRLPFARPPEITIMAPDQIETITDATDLLVDQQDVTPLG
                     LAYQAIELQTSEDVLDAALRRVLRAMKV"
     gene            2851..4671
                     /locus_tag="VIU37_01805"
     CDS             2851..4671
                     /locus_tag="VIU37_01805"
                     /inference="COORDINATES: protein motif:HMM:NF016736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEY6012703.1"
                     /translation="MTGGIIYLDIDDEITSAAARVRSTDARRVALVLPYGSRVATSRI
                     NFRLLSRDALINEKQLAVVAADSATRALAASAGLPVFSSVGEYESSFAGLEAEPEDGP
                     APGAAVVPPAPGAAGRPVKGARSGTGAGPRPKPAGTGGASRPSADGGPGAGTDRVDAA
                     AMGGATVTMPVPNPRVATTDRHATPARESDERAARSGRPFAAPSPRSSGRGGLRLPLV
                     IALAVIGLVVLVGGVGAYVLLPSATIVVTPRPEALQPLTFTIKADPAATQPDAAALVV
                     PAVTVPIDVSVTDTFPATGKRVEETKATGQVRFSNLDFLRTNTVPGGSIVSTGAGVKF
                     RTNSTITVPKADLVGLTVFPGRATVGVTAVEPGLAGNVEPNTIVIVPKGEDPQALKVV
                     NPDATGGGKHDEFPKVAQADVDAALKQLGTALDAAFKDRLSDPSIAGAGATVFRETAV
                     LGKATPDVDPATLVDKEIAAFQLGLSATGTVVTVDESPIASLAEQRFRSSVTSGHQLV
                     AGSIKVDVGAATITGQVVSFPATATGQQVAMLDPAELRRLAMGKSLADARAALAAYGD
                     VTVTAWPDWVGTVPTIDSRVSVSIQGSVPVETPGPSVSPS"
     gene            4668..5210
                     /gene="ruvX"
                     /locus_tag="VIU37_01810"
     CDS             4668..5210
                     /gene="ruvX"
                     /locus_tag="VIU37_01810"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEY6012704.1"
                     /translation="MTRLLGIDLGQRRVGLALADRDGSAARPLATIRRSSGLEGDVTA
                     IRIIVDRYEVDELVVGDPLEAAGDEGPQATTTRAWAAAVGERLGLPVTLRDERLSSHV
                     AETRLGPMKRGRSGGPPSKTQRDAYRARVDREAAAIILQDELDARAATSARCGPAPDV
                     LAPAPPDPEPAVIPDTEATR"
BASE COUNT          742 a         1922 c         1991 g          686 t
ORIGIN      
        1 cgacggagcg atccggacgc tggcccccga cgcccgtcgc gaggtcggcc ggcgcctgga
       61 ggcggtcccc gcggacgcgc cgacactgcc cggagcgacg gccttccggc tgcacgacac
      121 gtacggcttc ccgttcgagc tgaccgagga gtacctggcc gaattcggca tccgcgtcga
      181 ccgggcgggg ttcgacgtgg ccatggccga acagcggtct cgcagccggt cgggcaagaa
      241 ggcggagcta gcgaagcacg ccgagctcgc cgggttgtac ggcgcgatcc aggcacgaca
      301 cggcgacacg cggttcctgg gctacgaggc cacgaccgcc gagggccggg tcatcgcgat
      361 cctccgcgac ggcatggaat acgacgagct gaccgggcat ggcgaggcgg aggtggtcct
      421 cgaccagacc ccgttctacg gcgagggcgg cggccaggtc ggcgaccgtg gcgtgatccg
      481 cgagcccggc gccggaagcg agctgttcac ggtgaccgac acacagaagc cggtcggcgg
      541 cctgatcgtg caccgcggcc ggctccacgg ccggctgcgg gtcggcgaga ccgtggaggc
      601 cgccgtcgac cccgagcggc gcgcccacac gatgcgaaat cacacgggca cgcacctcct
      661 ccatcgagcg ctgcgcaacg tggtcggtga gcgagcccgc caggccggct cgctggtgac
      721 gccggactac ctgcggttcg acttcccctt cgaccgtggc ctgaccggcg acgagctgcg
      781 cgcgatcgag gacgaggtcc atcggatcgt ccgcgaggat cgcccggtca ccatcgcgtt
      841 catgggcatg gccgaggcga tccagggcgg cgccgatgcc ttcttcgacg agaagtacgg
      901 cgagacggtc cggaccgtcc gggtgcagga ctacagcttc gagctgtgcg gcgggacgca
      961 ctgccgcgcc agcggccaga tcggcggctt cctgatcacc ggggagcgga gcatcgggtc
     1021 cgggatgcgc cggatcgagg cggtgaccgg tgccgcggcg gacaccctcg tgcgggagcg
     1081 gttcgcgctg ctcgagcgcg cggccggggc ggtcggtgcc cagacgctcg acgccgtgcc
     1141 agagcggatc gccaccctgc agagcgacct gcaggaggcg cggcgccggc tcaaggcggg
     1201 cggcgcggca tccggcgtcc cgaagcccgg cgagcttgtg gcccgcgcgg ccgaggtcgt
     1261 accgggtgtc cgcctggtcg ccgccgccgt gccgtacgag tcgatggagg cgctcaaggg
     1321 agcggcccgc gacgtgagcg ggacgctcgg ttccggcgtg gtggcgctcg cgctcgacgc
     1381 cccggagccg caggtgttcg tcaccgtctc cgaggacctc gtcgctcgcg ggatctcggc
     1441 gggtgacctg gtcagcgccg cgatgccctc gatcgacggg cgcggaggtg gccgcccggg
     1501 catggcacag ggtcgcggga cgcggcgcga cggcctcgag gcggcgctcg ccgcggttcg
     1561 ggcgcggctc gagaccgggg actgatggcc ttctggcggc gcatctggca acgtgacggc
     1621 gaggaagccc tcgccgcctg taccgcgctc gacgtcggca ccgaattcgc caaggcgctc
     1681 gtcttcgata tcgacggcga cggtcacggg accgtccgcg gcgtcggtcg caagcgccag
     1741 gggctgtcgc acatgcagtc gggcacggtc gccgacatcg cggcggtcgt cgacaactgc
     1801 gcggtcgcgc tccaggaggc cgaggagatg gccgggttcc ggccgaccca ggtcgtgatc
     1861 gggatcgccg gcgagctggt caagggcttc accacaacgc actcgcagga acgcaagaag
     1921 ccggaccagc cgatcacgga aggcgagctc cagaagctga tcgacgccgt ccagcgcgag
     1981 gcgctccagg aggccgagcg ggcgatcacc tgggagaccg gcctgccgca cgtcgacgtc
     2041 cggctggtcc acgcggccgt caccggggcc tcgatcgacg gctacgcgct gaccaatccg
     2101 gtcggcttcc agggccggca tgtcaagatc ggcatcttca atgcgttcgc accgctcgtg
     2161 catctcggcg cgctccagag cgtggcctcg cagctcgacc tcgagctcct cgagatcgtg
     2221 gccgagccat atgccgtcgc tcgcgtgctc ggcagcgacc acatccgcca ggccggggcg
     2281 ctgttcgtcg acgtcggcgg cggcacgacc gacgtggcgc tggtgcgaaa gggcgggatc
     2341 gagggcaccc ggatgttcgc gctcgggggc cgggcgttca cgaagagcct cgccgaccgg
     2401 ctggacctgc cgttcccgcg tgccgagtcg ctcaaggtcg actacgcgcg cggactcgcc
     2461 gtcgagagcg ccgaggacgt ggcacgggtc atcgccgacg acgtccgggt ctgggcggcg
     2521 ggcgtggagc tggtgatgga ggagctgtcg gccggcgacc tgctgccggg gcggatcttc
     2581 ctgtgcgggg gcggttcgcg cctgccggag atccgggccg cgctggccga cgcggcgttc
     2641 tggcagcggc tgccgttcgc acggccgccg gagatcacga tcatggcccc cgaccagatc
     2701 gagaccatca cggatgccac cgacctgctc gtcgatcagc aggacgtcac gccgctcggg
     2761 ctcgcctacc aggcgatcga gctgcagacg agcgaggatg tgctcgacgc cgcgctccgc
     2821 cgcgtcctcc gagcgatgaa ggtctgagcc atgaccggcg ggatcatcta cctcgacatc
     2881 gatgacgaga tcacgtcggc ggcggcccgg gtgcgttcga ccgacgcccg gcgggtcgcc
     2941 ctggtgctgc cgtacgggtc gcgcgtcgcg acctcgcgga tcaacttccg gctgctgtcg
     3001 cgcgacgcgc tgatcaacga gaagcagctc gccgtcgtcg ccgcggactc cgcgacccgg
     3061 gcgctcgcgg cgtcggccgg gctgccggtc ttcagctcgg tgggggagta cgagtcgtcg
     3121 ttcgcgggtc tcgaggccga gcccgaggat gggccggcgc cgggcgccgc ggtggtgccg
     3181 ccggcacccg gcgcggccgg gcggccggtc aagggcgctc gaagcggaac gggggcaggc
     3241 ccccggccga agcccgctgg gaccggcggg gcgtcgcgtc cgtcggccga cggcgggccg
     3301 ggcgccggca ccgatcgcgt cgacgcggcg gcgatgggtg gcgcgacggt gacgatgccc
     3361 gtgcccaacc ctcgcgtcgc gacgaccgac cgccacgcca caccggcccg ggagtccgac
     3421 gagcgtgcgg cccggtccgg gcggccgttc gccgcaccgt cgcctcggtc gtcggggcga
     3481 ggtgggctgc ggctgccgct ggtcatcgcc ctcgcggtga tcgggctggt cgtgctcgtc
     3541 ggcggcgtcg gcgcctacgt cctgctgccg tcggccacga tcgtggtgac gccgcggccc
     3601 gaggcgctcc agcccctgac cttcaccatc aaggccgacc cggccgccac ccagcccgac
     3661 gccgcggcgc tcgtcgtccc ggccgtcacc gtgccgatcg acgtgtccgt cacggacacg
     3721 ttcccggcga cggggaagcg ggtcgaggag acgaaggcga ccggccaggt caggttctcg
     3781 aacctcgact tcctgcgcac gaacaccgtg ccgggcggga gcatcgtcag caccggagcc
     3841 ggcgtgaagt tccggacgaa ctcgacgatc accgtgccca aggccgacct cgtcgggctg
     3901 acggtctttc ccggccgggc aacggtgggc gtgacggcgg tggagccggg cctggccggc
     3961 aacgtcgagc ccaacacgat cgtgatcgtg ccaaagggcg aggatcccca ggcgctcaag
     4021 gtcgtcaacc ccgatgcgac cggcggcggc aagcacgacg agttccccaa ggtcgcccag
     4081 gccgacgtcg atgcggcgct caagcagctg ggcaccgccc tcgacgccgc gttcaaggat
     4141 cggttgagcg atccgtccat cgcgggtgcc ggcgcgaccg tctttcgcga gaccgccgtg
     4201 ctcggcaagg cgaccccgga cgtcgatccg gccaccctgg tcgacaagga gatcgccgcg
     4261 tttcagctgg gattgagcgc aacgggtacg gtggtcaccg tggatgagtc tccgatcgcc
     4321 tcgcttgccg aacagcgctt ccgctccagc gtgacatccg gtcaccagct cgtggccggc
     4381 tcgatcaagg tcgacgtggg cgcggccacg atcaccggac aggtcgtcag cttcccggcg
     4441 accgccaccg gccagcaggt cgccatgctc gatccggccg agctcaggcg gctggcgatg
     4501 ggcaagtcgc tggctgacgc ccgcgcggcc ctcgccgcct acggcgacgt caccgtcacc
     4561 gcctggccgg actgggtcgg caccgtcccc acgatcgaca gtcgcgtcag cgtctcgatc
     4621 cagggctcgg tgccggtcga gacgcccgga ccatcggtct cgccgtcgtg acgcggctgc
     4681 tcggcatcga tctcggccag cgccgggtgg gtctcgccct cgcggatcgc gacggatcgg
     4741 cggcccgacc gctggcgacg atccggcggt cgtccgggct ggagggtgac gtgaccgcga
     4801 tccggatcat cgtcgaccgc tacgaggtcg acgagctggt agtcggcgat ccgctcgagg
     4861 ccgctggcga cgagggaccg caggccacga ccacccgcgc ctgggccgcg gccgtcggcg
     4921 agcgcctggg cctgccggtc acgctgcgcg acgagcggct gtccagccac gtggcggaga
     4981 cccgcctcgg cccgatgaag cgcggccggt ccggcgggcc accgagcaag acgcagcgcg
     5041 acgcctaccg ggcccgggtc gaccgcgagg cggccgcgat catcctccag gacgagctcg
     5101 acgctcgcgc cgccacatcc gcccgatgcg ggcccgcccc ggacgtcctc gccccggcgc
     5161 cgcccgaccc cgagccggca gtgatcccag acacggaggc aacccgatga cgatccgctc
     5221 cgggggacgt gcccgcgagc gcgaccaggc ccgcccggcc gacccgggca cgtacgacga
     5281 cgcctggcag cccgcctacg ccccggaccc gacccgcgct ggggggtcgg gcggccggaa
     5341 c
//
LOCUS       DATDDI010000125         2367 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_668673, whole genome shotgun sequence.
ACCESSION   DATDDI010000125 DATDDI010000000
VERSION     DATDDI010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_668673"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2344
                     /locus_tag="VIU37_01815"
     CDS             <1..2344
                     /locus_tag="VIU37_01815"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6012705.1"
                     /translation="RVAARSPECRRVLRLLAPAGRPLTSRQLADVAAAFETDAQRSAP
                     RSSSAPRHGDGVLDADLRAGLTEALEHGFLVEDDGELRFRHESIGRAVDRDLLPFLRT
                     RHLAALATGLAGPAVGTARYWLDAHEPERAREVAITAAGEAGERHAPADELAALELAL
                     AVHPPAASAAGARRKGDRSPADTAELQVRAAEAAYAIGRTARATAYLEAAAAGMDARR
                     DRVRLGLLYERLSHVRRAAGDSAAAIIAARRAVELVPREPSPERAKVLAALARLRMLE
                     GVFSEAQRLAREAIRVARACEPVARAQEIHASTTMGVAMAWGSDPEGGIAPLRQAENG
                     ARAIDDPDQLFRITANLTTVLDLVGRRAEAVDVAYRGIEEARSAGLEAVYGNFLAGNV
                     AETLILLGRWPEARSLCLRALRWAPVGVIFLDALIFLAAVEIETEAGEEAGRLLGQTV
                     LEFDALREPQLAGSYYLVAASFSLWRGDVGDASRSVERGWAVVKSTEEWVLAARMAAM
                     VAQVDAAVAVEAREHRQLAPLPAARTRTTDVIAAAAAQVRAGSAPPTAGSRRIAEAYL
                     ATARAYQRRLEGDDRPDAWAHVAEVWTDLSAPYDAALARWRQAEAALSGGAGRSGRSD
                     ARRPIEEAARVALELHARPLLREIRELAGRARLTLPGAVDEFLGETPAGPTAAVAVGP
                     SAGPATAATDGQSELVRAVAGDPSSTTHRQDTFGLSGREREVLALVAQGRTNREIGER
                     LFISQKTVGVHVGNILAKLAVSGRVEAATVAIRLGLTSPN"
BASE COUNT          276 a          905 c          903 g          283 t
ORIGIN      
        1 ccgggtcgcc gcgcgctccc ccgagtgtcg ccgggtcctc cgcctgctgg cgccggccgg
       61 ccgcccgctc acgtctcggc agctggccga cgtcgccgcc gcgttcgaga ccgacgcgca
      121 gcgatcggcc ccccgctcga gctccgcgcc gcgccacggc gacggggtcc tcgacgccga
      181 cctgcgggcc ggtctcaccg aggccctcga gcacggcttt ctggtcgagg acgatggcga
      241 gctccgcttc cgccacgagt cgatcgggcg ggcggttgac cgtgacctgc tgccgttcct
      301 ccggacgcgc cacctcgccg ccctggcgac gggactggcc ggcccggccg tcgggaccgc
      361 ccgctactgg ctggacgctc acgagccgga gcgggcccgc gaggtcgcca tcaccgcggc
      421 cggcgaagcc ggcgagcgac acgcccccgc cgacgagctg gcggcgctcg agctggccct
      481 ggccgtccat ccacccgctg cgtcggccgc cggcgcgcgc cggaaggggg atcgctcgcc
      541 ggccgacacc gccgagctcc aggtccgggc cgccgaggcg gcctacgcga tcggccggac
      601 cgcccgggcc acggcctatc tggaggcggc ggccgccggc atggacgccc gccgggaccg
      661 ggtgcggctg ggactgctgt acgagcggct ctcccacgtc cgtcgggcgg ccggcgactc
      721 ggccgcggcg atcatcgcgg cccgacgggc ggtcgagctc gtgccccggg agccaagccc
      781 cgagcgtgcg aaggtgctgg ccgccctggc gcgactgcgg atgctcgagg gcgtgttcag
      841 cgaggcgcag cgcctcgccc gggaggcgat ccgggtcgcg cgagcctgcg agcccgtcgc
      901 ccgcgcccag gagatccatg cctctacgac gatgggcgtg gcgatggcct gggggagcga
      961 ccctgaggga gggatcgcgc ccctgcgcca ggcggagaat ggcgcccgcg cgatcgacga
     1021 cccggaccag ctgttccgga tcaccgccaa cctcacgacc gtgctcgacc tggtcggccg
     1081 acgcgcggaa gccgtcgatg tcgcctatcg cgggatcgag gaggcgcgct ccgcggggct
     1141 ggaggcggtc tacgggaact tcctggcggg caacgtcgcc gagaccctga tcctcctcgg
     1201 ccgctggccg gaggcccgtt cgctgtgcct gcgcgccctg cgctgggcgc cggtcggagt
     1261 catcttcctc gacgccctga tcttcctggc cgccgtcgag atcgaaacgg aggccggcga
     1321 ggaggccggc cgcctgctcg gccagaccgt cctcgagttc gacgccctgc gcgagccgca
     1381 gctggccggc tcgtactacc tggtcgccgc atcgttctcg ctgtggcgcg gcgacgtcgg
     1441 cgacgccagc cgctcggtcg aacgtggctg ggcggtcgtc aagtcgaccg aggaatgggt
     1501 gctcgccgcc cggatggcgg cgatggtcgc gcaggtcgac gcggcagtgg ccgtggaggc
     1561 ccgcgagcac cggcagctgg cgccgctccc ggcggcccgc acccggacga ccgacgtcat
     1621 cgccgcggcg gcagcgcagg ttcgcgccgg ctcggccccg ccgaccgccg gctcacgccg
     1681 gatcgccgag gcgtacctcg ccaccgcccg cgcctaccag cgacggctcg agggcgacga
     1741 ccgtccggac gcctgggcgc acgtcgccga ggtctggacc gacctgtcgg cgccctatga
     1801 cgcggcgctg gcgcgctgga ggcaggccga ggcggcgctg tccggcggcg ctgggcgctc
     1861 ggggcggtcc gacgcgcgcc ggccgatcga ggaggccgcg cgggtcgccc tcgagctcca
     1921 tgcgcgcccg ttgctgcgcg agatccgcga gctcgccggt cgcgcccggc tgacccttcc
     1981 gggcgccgtg gacgagttcc tcggcgagac gccggcgggg ccgaccgccg ccgtggccgt
     2041 gggtccgtcg gcgggcccgg cgaccgccgc aacggacggt cagtcggagc tggtccgggc
     2101 ggttgcgggc gatccatcga gcacgaccca ccgccaggac acgttcggcc tgagcggccg
     2161 cgagcgcgaa gtgctcgccc tggtcgcgca gggccgaacg aaccgcgaga tcggcgagcg
     2221 cctgttcatc agccagaaga ccgtcggcgt ccacgtcggg aacatcctgg ccaagctggc
     2281 ggtctcgggc cgggtggagg cggcgaccgt ggcgatccgg ctggggctca ccagcccgaa
     2341 ctaggaaccg gacgccgcga gacccgg
//
LOCUS       DATDDI010000126         2276 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_106654, whole genome shotgun sequence.
ACCESSION   DATDDI010000126 DATDDI010000000
VERSION     DATDDI010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106654"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VIU37_01820"
     CDS             <1..257
                     /locus_tag="VIU37_01820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012706.1"
                     /translation="VDGLEDRAFDAVLLEQDGRSRPLPAAMRTEPATVAAERLVAAGE
                     RRLRALYSAIPSVVIEEPDWRATDPDGRTLRDIDTPADLP"
     gene            complement(356..568)
                     /locus_tag="VIU37_01825"
     CDS             complement(356..568)
                     /locus_tag="VIU37_01825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012707.1"
                     /translation="MNAYAYFIVNHHLDYLLEQASKRQRVDELFPRPSIRARIASTLA
                     GVRRVFDPVELSGPALPNLEHYPYRG"
     gene            complement(726..>2276)
                     /locus_tag="VIU37_01830"
     CDS             complement(726..>2276)
                     /locus_tag="VIU37_01830"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY6012708.1"
                     /translation="LVAVGSDRAIRPLIGPGSRVIELRGRTVTPGFGDAHVHPLHGGL
                     ARLRCELHGQRGEATYLATVGSYAASHPDVPWILGGGWSMDDFPGGIPGAASLDRIVP
                     DRPVFLSSRDGHSAWVNSRALEIAGITADTADPPDGRIDRDADGRPIGALQEGAADLV
                     ERFVPPATADELLAALRLAQAELHALGITTWQDAIVTPEVEEPAYVTLAGRGELTARV
                     VGALWWERSRGAEQIDEFVERRERTAVGRYAPTSVKIMQDGVLENFTGAVLEPYLGPD
                     GRPTGNRGLSQVEPEALKGHVTRLDALGFQPHFHAIGERAVREALDAVAAARAANGMS
                     DTRPHIAHIQVIHPDDLGRFRELGVVANAQPYWACHEGQMDNLTIPFLGPERSTWQYP
                     FRSLRAAGATLAMGSDWSVSTANPLLEMEVAVNRVSDISRGAEPAFLPDERLDLVDAL
                     AAFTAGTAWVNHLEREIGSLEAGKAADLVVLDRDLFDRGAGAIGEARVVGTFIDGKPV
                     FEDPALGG"
BASE COUNT          300 a          828 c          839 g          309 t
ORIGIN      
        1 tcgtggatgg cctcgaagat cgggcgttcg acgccgtcct gctcgagcag gacggccggt
       61 cgcgcccgct gcctgccgcg atgcggaccg agccggcgac ggtcgcggcc gagcggctgg
      121 tggcggccgg cgagcggcgg ctccgcgcgc tctactcggc gatcccgagc gtcgtcatcg
      181 aggagccgga ctggcgagcc acggacccgg atgggcggac cctcagggac atcgacacgc
      241 cggccgacct gccgtaggac gggtgcgggc cgcccggcgg acacacgaag gcctccgccg
      301 gaggagagcg gaggccttcg tcgcttggga ggaagcgcgg agctgagggt agggctcagc
      361 cccggtacgg atagtgttcg aggttcggca gggccggccc ggagagctcg accgggtcga
      421 agacccggcg cacgccggcg agggtcgacg cgatccgagc gcgaatgctc ggccggggaa
      481 acagctcatc gactcgctgc cgcttcgatg cctgctcgag caggtagtcg aggtggtggt
      541 tcacgatgaa gtaggcgtag gcgttcaccg gagctctcct ttctgccgcc cccggttcgg
      601 tggcgcaggg agagcatcgg tccgcccggg tgtccccgga cacggacatc cgccgccaac
      661 tcggcatcgt catccgtcca tgccgatcgt cgggctcgtc ggcctcatcg gccgcgtcgg
      721 cggcgtcagc cgccgagcgc cggatcctcg aagaccggct tcccgtcgat gaacgtgccg
      781 accacgcggg cctcgccgat cgcgccggcg ccgcggtcga acaggtcgcg gtcgagcacg
      841 accaggtcgg ccgccttgcc ggcctcgagc gacccgatct cgcgctcgag atggttcacc
      901 caggcggtgc cggcggtgaa cgccgccagc gcgtccacga ggtccagccg ctcgtcgggg
      961 aggaacgccg gctccgcgcc acggctgatg tccgagaccc ggttgaccgc gacctccatc
     1021 tcgagcagcg ggttggccgt cgagacgctc cagtccgagc ccatcgccag tgtggcgccg
     1081 gccgcccgga gcgagcggaa cgggtactgc caggtcgacc gctcagggcc caggaacggg
     1141 atcgtgaggt tgtccatctg gccctcgtga caggcccagt acggctgcgc gttggcgacc
     1201 acgcccagct cgcggaatcg cccgaggtcg tccgggtgga tgacctggat gtgggcgatg
     1261 tgcggacgcg tgtcgctcat cccgttcgcg gcgcgggccg ccgccaccgc atcgagcgcc
     1321 tcgcggaccg cgcgctcgcc gatggcgtgg aagtgcggct ggaagcccag ggcgtcgagc
     1381 cgggtgacgt ggcccttgag cgcctcgggc tcgacctggc tcaggccgcg gttgccggtc
     1441 ggacgcccgt ccgggcccag gtacggctcg aggacggccc cggtgaagtt ctccagcacc
     1501 ccgtcctgca tgatcttgac gctcgtcggg gcgtaccggc cgaccgccgt ccgctcgcgc
     1561 cgctctacga actcgtcgat ctgctcggcc ccacgcgagc gttcccacca cagcgccccg
     1621 acgacccgcg ccgtcagctc gccccggccg gccagcgtga cgtacgccgg ctcctcgacc
     1681 tccggggtca cgatggcgtc ctgccaggtc gtgatcccca gcgcgtgcag ctcggcctgg
     1741 gcgagccgga gcgcggccag cagctcgtcc gcggtcgccg gcgggacgaa ccgctcgacg
     1801 aggtccgcgg caccttcctg gagcgcgccg atcggccggc cgtcggcgtc acggtcgatc
     1861 cggccgtcgg gcgggtccgc cgtgtccgca gtgatcccgg cgatctcgag cgccctggag
     1921 ttgacccagg cgctgtggcc gtcgcggctg gacaggaaga ccggccgatc cggcacgatc
     1981 cggtcgagcg acgcggcccc ggggatccct ccggggaaat cgtccatcga ccagccgcca
     2041 ccgaggatcc acgggacgtc cgggtggctc gccgcgtagc ttccgaccgt cgccaggtac
     2101 gtcgcctcgc cgcgctggcc gtgcagctcg cagcggagcc gggcgagtcc gccgtgcagc
     2161 gggtggacat gcgcgtcgcc gaagcccggc gtcacggtcc ggccccgcag ctcgatcacg
     2221 cgtgagccgg gtccgatcag cgggcggatc gcccggtcgc tcccgacggc gacgag
//
LOCUS       DATDDI010000127         8828 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_377274, whole genome shotgun sequence.
ACCESSION   DATDDI010000127 DATDDI010000000
VERSION     DATDDI010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 8828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8828
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377274"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1071
                     /locus_tag="VIU37_01835"
     CDS             <1..1071
                     /locus_tag="VIU37_01835"
                     /inference="COORDINATES: protein motif:HMM:NF015588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012709.1"
                     /translation="PWEADFDRGDEAVPRWSKADKDHVTLDVGLAFELYANVTGDRLF
                     ARMEALPVIAGVAEWLLSRVEATDRGLEIRRVRGPAEAFDPVDNSAFVNLAAITFLRR
                     AAAIVRDLGDEPPDEWEAAAEAMVVPRDPRTGAIVNHDGYRLDERLAETPEAAAAFFP
                     LGYRDRPEVEAATLRYALRHQAPRYVGTPMFSALLGVHAAWAGRRKRAAELFEHGYAA
                     FFDDPFWAPDEYPAADARFPQASPMLANLGAFLGSLLYGLPGILPNAGDPGSWPERRV
                     ILPAGWKEIAVDRLWIRGRPARLVAVHGADRARLELGERDWMHRRRRGAVRPLVPATS
                     TGRSPAHEPAARQVAGEGRVPG"
     gene            complement(1102..3420)
                     /locus_tag="VIU37_01840"
     CDS             complement(1102..3420)
                     /locus_tag="VIU37_01840"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY6012710.1"
                     /translation="MSNVPAPIPARAPLALIVKPAQGVVRRPWLVFLAVGLVAVELYY
                     LVPPLVDPLYLAIGFGAAAAIVAGWLVNRPVQRGWLLLAAGIGLYSLGDLVYTIIAAE
                     TGTEPFPSIADALYLLGQVLFVVGVARLAAPAERGLYRPAMIDAALVALAGVFVAWPT
                     VLDGIGFEQLDPLSAALSLAYPALDLVLIGVLARHLLQPGRKSVSLLLLLGGVAAWLA
                     ADLIYAGLSASGEYVSGMWLDAGWLLGYVLVGASALHPSMAQVVAPNELHEATVSNRR
                     LVSLGVVVSIPIVVFVLHGPPVHPIDGPVFALGASALVLLGSVRLLGALHASRVLLAE
                     QRALEAELERRATTDRLTGLANRFAVVDRLTAARERGERIGVVYLDLDDFKRINDAFG
                     HPTGEEILRDVADRLRTVVADPLDVAHVGGDEFAILVRDCADQAQATEVAIRAMAALK
                     PIVRRGEHGFRIQASIGIVWAGPLTVSADEILSRADIAMYQAKDRGGNGYAVFEPAMQ
                     ERARLRTRLQNDLDGAVDRGEIQPWYQPIFDVRSGRLVGMEALARWQHGERGLVLPDE
                     FIPIAELSGLITGIDRHIATVATAQVAEWSRRLGSPLQLHVNITPQEATDPATVEGME
                     AALRRSGLPPRSLVVEVTETALIDEAAVAPVLAGLKALGVRLSIDDFGSRYAVLTQLG
                     RLPIDVVKLDRSLLTGLDTQAGIRLFHGIVRLAQSLRLETVAEGVESLDLLPVLRQLG
                     CDAAQGYALGRPMTAEDAGAAVIEVSANSAIA"
     gene            complement(3467..5908)
                     /locus_tag="VIU37_01845"
     CDS             complement(3467..5908)
                     /locus_tag="VIU37_01845"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY6012711.1"
                     /translation="MTTRTAARTTQRIPTSVTRRYSPRNIVLAYVLVAGAWIALSDQF
                     VAVMHLEPAALASAQTVKGWLFVIATGSLVGLLLRGYSREQARTQARLERVSRVQRTL
                     SAANQALVRAVDELPLQEAICQAAITEGGFRFAWVGYRRDDDAGTVEPVARAGHEDGY
                     LDAVRISWRDVPTGRGPTGTAVREGRTIVNQRIATDPLMAPWRDMAIRRGFLSSAAFP
                     LFGPDGVLGALTIYAAEPEAFGPEEVALLEELASDLSYGVEALRTRTLAGRAESTRRQ
                     LMTAINQSADSILVADVEGRTLYVNPAFERVTGYSSEEVLGRNPRLLQSGHHNRAFYE
                     TMWRTLLDGRPWVGDVVNRRKDGALFTEESVISPVHDDAGAITAFVAVKRDVTLERTA
                     QAREQARSQERAQVAQALAQLHPEATAEETADAICHEIVRLPEAHVAVVLAFDADRRA
                     TSLGAAASSGREISRRLVSEARTRHLRSRASEGPWVESWPAEQRQSFGKEFRDLDIRA
                     LAFAPIRVQQDVVGLLELGAAGPDASDRLAERLPALVEFASIAGAVLGPSMASRVQRS
                     RSRELIQSTIARSAFHPVFQPIIDLRSLGVIGYEALTRFDDGTAPDTQFMTAAALGLG
                     ADLEVATLRAALAAAAALPPVPWVNVNVSPALILAGEPLRSIIAAFPGKLMLEVTEHE
                     VIADYEAFRTAVATLGPTVQIAVDDAGAGFASLRHIVELRPHVVKIDRSLVAGIDADP
                     ARQALLAGLRHFANSQGCRLVAEGIETESELATLVSLDIHAGQGYLLGRAVPILAGPD
                     ANEPQGSGRAGTGVP"
     gene            complement(6017..6676)
                     /locus_tag="VIU37_01850"
     CDS             complement(6017..6676)
                     /locus_tag="VIU37_01850"
                     /inference="COORDINATES: protein motif:HMM:NF022307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2652 domain-containing protein"
                     /protein_id="HEY6012712.1"
                     /translation="MADLGTLGPTPPRRADGPLLLADIGGYTAFLRAVATAHEDDAFA
                     NGAIPDAYAMMSSLLDGIVGRLVPPFALAKLEGDAVFAYSTDASTLPAGAGLRSCIEA
                     CYAEFRSRLDAAHDVWTCTCDACLRIESLELKFILHAGPFVIQEIAGHAELVGPDVVM
                     AHRLLKNEAEALLGHGAYALLTAAAVERFGVPTDGASRLVARYEHYPPIDTFLFPLRA
                     A"
     gene            complement(6669..7826)
                     /locus_tag="VIU37_01855"
     CDS             complement(6669..7826)
                     /locus_tag="VIU37_01855"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HEY6012713.1"
                     /translation="MSGRERVLAAINHEEPDRVPIVIGASNATGMKLAPYRGLKHLLG
                     LEGEDRYIYDWPELGTVLPDEAVLERLHSDVRGVFDAFPAETIARNRARPPHSPFIDD
                     WGSGQVEIEEGTWYPAVHPMADATTIDAIERYPWPDMDDPTRVAHVRAAAAELASDGR
                     YAILATPWLLFPFERAFAMQGLEQFLMNLAVEPDFAEALLRRIAEQCKVLMGHFLGEL
                     GENVDIIKIGDDLGTEQSLLMSPAMYRRILKPIHADYIAFIKERTRARVFFHTDGDVF
                     DLLDDFVEIGVDILNPVQSGSGKLGNLAEVKRRYGTRLAFCGAIDTQHVLPTGTPDEV
                     RAEVRRAIATLGPGGGYLLAAVHTIMNEVPPENVLAMADAAVEFGSYPIRG"
     gene            complement(7829..8512)
                     /locus_tag="VIU37_01860"
     CDS             complement(7829..8512)
                     /locus_tag="VIU37_01860"
                     /inference="COORDINATES: protein motif:HMM:NF014375.4"
                     /note="Presence of a B(12) (cobalamin)-binding domain
                     implies dependence on cobalamin itself, in one of its
                     several forms, or in some unusual lineages, dependence on
                     a cobalamin-like analog; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-dependent protein"
                     /protein_id="HEY6012714.1"
                     /translation="MGAVDLAALSEAIETGDRDGAVALTAAAIAGGITPQAILDAMTD
                     AMDAVGEDFQANLIFVPEMLVAARAMRESMALLEPILVKAGIKPEARAIIGTVRGDLH
                     DIGKNLVAMMWRGANIEVIDLGTNVTAEQFVEAVKTHRPDLVGLSALLTTTMPSMGSI
                     VAELRRTDLGGARIIVGGAPVNAEFAERIGADAYAGDAGAAVVVARGLLGLDAAGTSA
                     GQAIGGAGS"
BASE COUNT         1311 a         3094 c         3199 g         1224 t
ORIGIN      
        1 ccctgggagg ccgacttcga tcggggcgat gaggcggtgc cgcgctggag caaggccgac
       61 aaggatcacg tgaccctgga tgtcggcctc gcgttcgagc tgtatgcgaa cgtcaccggc
      121 gaccgcctgt tcgcgcgcat ggaggcgctc cccgtgatcg ccggcgtcgc ggagtggctg
      181 ctgtcgcgtg tcgaggccac ggaccggggc ctcgagatcc gtcgcgttcg cgggccggcg
      241 gaggcgttcg acccggtcga caacagcgcc ttcgtcaacc tggccgcgat caccttcctg
      301 cgccgcgcgg ccgcgatcgt ccgcgacctg ggcgacgagc cacccgacga atgggaggcg
      361 gcagccgagg ccatggtggt gccccgcgat ccccggacgg gcgccatcgt caaccacgac
      421 gggtaccggc tggacgagag gctggcggag acgcctgaag ccgccgcggc cttcttcccg
      481 ctcgggtacc gggatcggcc cgaggtcgag gccgccacgc tgcgctacgc cctgcgtcac
      541 caggcgccgc gctacgtggg cacgccgatg ttctcggcgc tgctcggggt gcacgcggcc
      601 tgggccggtc ggcgcaagcg ggcggccgaa ctcttcgagc acggctacgc cgcgttcttc
      661 gacgatccgt tctgggcgcc ggacgagtat cccgccgcgg acgcccgttt cccgcaggcg
      721 agcccgatgc tggcgaacct gggtgcgttc ctcggcagcc tgctctacgg cctcccgggc
      781 atcctgccga acgcgggaga ccccgggtcc tggcccgaac gacgggtgat cctgccggcg
      841 ggctggaagg agatcgcggt cgaccgattg tggatccgtg gccggcccgc ccggctggtg
      901 gccgtccacg gtgccgaccg ggcgaggctc gagctcggcg agcgcgactg gatgcatcga
      961 cggcggcggg gtgccgtgcg gccgctggta ccggcaacgt ccaccgggcg gagcccggcc
     1021 cacgaaccgg cggcgcggca ggtggccggc gaaggccgcg tcccgggctg acggcgcggc
     1081 gagcagtccg gagatcgtgt cctaggcgat ggcggagttc gcggaaacct cgatcaccgc
     1141 ggcgccggca tcctcggccg tcatcggccg cccgagggca tacccctgcg cggcgtcgca
     1201 accgagctgc ctgaggaccg gcagcaggtc gagcgattcg acgccctcgg cgaccgtctc
     1261 cagccgcagg ctctgcgcga gccgcacgat gccgtggaac agccggatgc ccgcctgcgt
     1321 gtcgaggccg gtcagcaggc ttcggtcgag cttgacgacg tcgatcggca gccgaccgag
     1381 ctgggtcagc acggcgtagc ggctgccgaa gtcatcgatc gacagccgga cgccgagcgc
     1441 cttcagcccg gccaggaccg gggccaccgc ggcctcgtcg atgagggccg tctcggtcac
     1501 ctcgacgacc agcgacctcg gcggcaggcc ggagcgacgc aacgccgcct ccatcccctc
     1561 gacggttgcc gggtcggtgg cctcctgggg cgtgatgttg acgtggagct ggagcgggct
     1621 ccccagccgg cgcgaccatt cggcgacctg cgccgtggcc accgtggcga tgtgccggtc
     1681 gatcccggtg atgagcccgg acagctccgc gatcgggatg aactcgtcgg ggaggaccag
     1741 gccgcgctcg ccgtgctgcc agcgcgccag ggcctccatg cccacgaggc gccccgagcg
     1801 cacgtcgaag atcggttggt accagggctg gatctcgcct cggtcgacgg ccccgtcgag
     1861 atcgttctgg agcctcgtcc ggagcctcgc ccgttcctgc atcgcgggtt cgaagacggc
     1921 gtagccattc ccgccgcggt ccttggcctg gtacatcgcg atgtccgcgc ggctgaggat
     1981 ctcgtcggcc gacaccgtca gcgggccggc ccagacgatc ccgatcgagg cctggatccg
     2041 gaagccgtgc tcccctcgcc gcacgatcgg cttcagggcc gccatggccc ggatcgcgac
     2101 ttcggtggcc tgcgcctggt cggcgcaatc gcggacgagg atggcgaatt cgtcgccgcc
     2161 gacgtgggcg acgtcgaggg gatcggcgac gacggtgcgc aggcgatccg ccacgtcgcg
     2221 gaggatctcc tcgcccgtcg gatggccgaa ggcgtcgttg atccgcttga agtcgtcgag
     2281 gtccaggtac accacgccga tccgctcgcc gcgctcgcgc gcggcggtca gccggtccac
     2341 gaccgcgaag cggttggcca ggcccgtcag ccggtcagtg gtcgctcgcc gctcgagctc
     2401 cgcttcgagc gcgcgctgtt ccgcgaggag gacgcgcgac gcgtgcaggg cgccgagcag
     2461 gcggacgctg cctaggagga ccagcgccga ggcgccgagc gcgaacaccg gcccgtcgat
     2521 cggatggacg ggtggaccgt ggaggacgaa cacgacgatc gggatcgaca cgaccacgcc
     2581 gagcgacacc agccggcggt tggagacggt ggcctcgtgg agctcattcg gggcgaccac
     2641 ctgcgccatc gacgggtgga gtgccgacgc tccgaccagc acgtacccca gcagccagcc
     2701 ggcatcgagc cacatgcccg agacgtactc gcccgatgcg gacaggccgg catagatcag
     2761 gtcggcggcc agccaggccg ccacgccgcc gagcaggagc aggagcgaga cggacttccg
     2821 acccggctgc aggaggtggc gagcgagaac cccgatgagg acgaggtcga gcgccgggta
     2881 ggccagcgag agcgccgcgc tcaacgggtc gagctgctcg aacccgatgc cgtcgagcac
     2941 ggtcggccag gccacgaaca ccccggcaag ggccacgagg gcggcgtcga tcatcgccgg
     3001 gcggtagagc ccgcgctcgg cgggcgccgc cagtcgggcg accccgacca cgaacagcac
     3061 ctggccgagc agatacaacg cgtcggcgat cgacgggaac ggctcggtcc ccgtctccgc
     3121 ggcgatgatc gtgtagacga ggtctcccag cgagtagaga ccgatcccgg ccgcgagcag
     3181 caaccagccg cgctggaccg gccgattgac cagccagccg gcgacgatcg ccgcggccgc
     3241 gccaaacccg atcgcgaggt acagcgggtc cacgagcggc gggaccaggt agtagagctc
     3301 gaccgcgacc agcccgacgg caaggaacac cagccacggg cgacggacca cgccctgcgc
     3361 gggtttgacg atcagcgcga gcggagcgcg cgccgggatt ggggcgggca cgttggacac
     3421 acgtggatga tcggcgccca cgagggatcc atcgtccccc cagaggtcat gggactccgg
     3481 ttcccgcccg gccggaccct tggggctcgt tcgcgtcggg acccgccagg atcggcaccg
     3541 ccctgccgag caggtatccc tgcccggcat ggatgtcgag gctcacgagc gtggcgagct
     3601 ccgactcggt ctcgatgcct tcggcgacca gccggcagcc ctgcgagttg gcgaaatgcc
     3661 ggagcccggc gagtaacgcc tggcgcgccg ggtcggcatc gatgcccgcg acgagcgatc
     3721 ggtcgatctt cacgacgtgc ggccggagct ccacgatatg tcgcaggctc gcgaacccgg
     3781 cgcccgcgtc gtcgacagcg atctggacgg tcggacccag cgtcgcgacc gcggtccgga
     3841 aggcctcgta atcggcgatc acctcgtgct cggtgacctc gagcatgagc ttgccgggaa
     3901 acgccgcgat gatcgagcgc aggggctcgc cggcgaggat cagggctggt gacacgttga
     3961 cgttgaccca cggcacgggc ggaagggccg ccgcggcagc cagtgccgcc cggagcgtcg
     4021 ccacctcgag gtccgcgccg agcccgagcg cggcggcggt catgaactgg gtgtccggcg
     4081 ccgtgccgtc gtcgaaccgc gtcagtgcct cgtagccgat cacgcccagg ctccgcaggt
     4141 cgatgatcgg ctggaagacg ggatggaagg ccgaccgggc gatggtcgac tggatcagct
     4201 cgcgcgagcg gctgcgctgg acgcgggatg ccatcgaggg accgagtacc gcgccggcga
     4261 tcgaggcgaa ctccacgagc gccggaaggc gctcggcaag ccggtccgat gcgtccggcc
     4321 cggccgcccc gagttccagc agccccacga cgtcctgctg cacgcggatc ggggcgaagg
     4381 ccaacgcgcg gatgtcgagg tcgcggaatt ccttgccgaa cgattggcgt tgctcggccg
     4441 gccagctctc cacccacggc ccctccgagg cccgcgaacg gaggtgacgc gtgcgcgcct
     4501 cgctcaccag ccggcgcgag atctcgcgac cgctcgatgc cgcggcgccg agcgacgtcg
     4561 cccgtcggtc ggcgtcgaac gcgagcacga ccgcgacgtg ggcttccggc agccgcacga
     4621 tctcgtggca gatggcgtcc gccgtctcct ccgcggtcgc ctcgggatgc agctgggcga
     4681 gcgcctgggc gacctgcgca cgctcctggc tgcgggcctg ctcccgggcc tgggcggtcc
     4741 gctccagggt gacgtcgcgc ttcacggcga cgaacgcggt gatcgctccg gcatcgtcgt
     4801 ggacgggcga gatcacgctc tcctcggtga acagcgcgcc gtccttgcgc cggttgacca
     4861 cgtcgccgac ccaggggcga ccgtcgagca gggtccgcca catggtctcg tagaaggctc
     4921 ggttgtggtg accgctctgg aggagtcgcg ggttgcggcc caggacctcc tcggagctgt
     4981 agccggtcac gcgttcgaac gccgggttca cgtacagggt ccgaccttcg acgtcggcca
     5041 ccaggatcga gtcggccgac tggttgatgg ccgtcatcag ctggcggcgc gtcgactccg
     5101 cccgcccggc gagcgtccgt gtccgcaggg cctcgacacc gtaactgagg tcggaggcga
     5161 gctcctcgag gagtgcgacc tcctcgggcc cgaaggcctc gggctcggcg gcatagatcg
     5221 tcagggcgcc gaggacgccg tccggcccga acagcgggaa cgccgccgac gagagaaagc
     5281 ctcgacggat cgccatgtcg cgccatgggg ccatcagcgg atccgtcgcg atccgctggt
     5341 tgacgatcgt gcggccttcg cgtacggcgg tcccggtcgg cccgcggccg gtgggcacgt
     5401 cgcgccagct gatccggacc gcgtcgaggt acccgtcctc gtggccggcg cgcgcgacgg
     5461 gctccaccgt gccggcgtcg tcgtcgcggc gatagccaac ccaggcgaac cgaaagccgc
     5521 cttcggtgat cgccgcctgg cagatcgcct cctggagcgg cagctcgtcc acggcccgaa
     5581 cgagcgcctg gttcgccgca ctcaaggtcc gctgcactcg ggagacacgc tcgagacggg
     5641 cctgcgtccg agcctgctcg cggctgtagc cgcgcagcag gagtcccacc agcgacccgg
     5701 tcgcgatgac gaacagccag cccttcaccg tctgggcaga cgccagggcc gccggttcca
     5761 ggtgcatcac cgcgacgaac tggtcgctca gggcgatcca cgccccggct accaggacgt
     5821 aggccagcac gatgttccgg ggcgagtagc ggcgtgtcac ggacgtcggg attcgttggg
     5881 tggtgcgcgc ggcagtgcga gtcgtcacga cacgaccacc ttgccccgcc ggcgacgcct
     5941 tggcgacggc ccaaaggtac gggcgagcgg tgcgacgggg tacgtcggat tccgagcccg
     6001 gcgccggccg cggcggtcag gccgcccgca gcggaaagag gaacgtgtcg atcggggggt
     6061 aatgctcgta gcgcgccacg agccggctgg ctccgtcggt cggaacgccg aaacgctcca
     6121 ccgccgcggc cgtcagcaac gcgtaggcac catgtccgag cagggcctcg gcctcgttct
     6181 tcaggaggcg atgggccatc acgacgtccg gtcccaccag ctccgcatgc ccggcgatct
     6241 cctggatgac gaacggcccc gcgtgcagga tgaacttcag ctcgagcgat tcgattcgca
     6301 ggcacgcgtc gcaggtacag gtccagacgt cgtgggcggc gtcgaggcgc gacctgaact
     6361 cggcgtagca ggcctcgatg cagctccgca gacccgcgcc ggccggcagg gtcgacgcgt
     6421 cggtcgaata ggcgaacacc gcgtcgccct ccagcttcgc cagtgcgaat ggcgggacga
     6481 ggcggcccac gatcccgtcg agcaggctcg acatcatcgc gtaggcgtcg gggatcgcgc
     6541 cgttggcgaa cgcgtcgtcc tcatgggcgg tggccacggc ccgcaggaac gccgtatagc
     6601 cgccgatgtc ggcgaggagc agcggcccat ccgcccggcg cggcggggtc gggccgagcg
     6661 tgccgaggtc agccacggat cggatacgag ccgaattcga ccgcggcgtc ggccatcgcc
     6721 aggacgttct ccggaggcac ctcgttcatg atcgtgtgga cggcagcgag gaggtagccg
     6781 ccgcccggcc cgagcgtcgc gattgcccgc cggacctcgg cacggacctc gtccggcgtg
     6841 ccggtcggca ggacgtgctg ggtgtcgatc gcaccgcaga acgcaaggcg ggtgccgtag
     6901 cgccgcttca cctcggccag gttgccgagc ttgccggagc ccgactggac ggggttgagg
     6961 atgtcgaccc cgatctccac gaagtcgtcg agcaggtcga acacgtcccc gtcggtgtgg
     7021 aagaagaccc tggcccgcgt gcgttccttg atgaaggcga tgtagtcggc gtggatcggc
     7081 ttgaggatcc ggcggtacat ggccggcgac atgagcaggc tctgctcggt gccgaggtcg
     7141 tcgccgatct tgatgatgtc gacgttctcc cccagttcac cgaggaagtg gcccatcagg
     7201 accttgcact gctcggcgat cctgcgaagg agcgcctccg cgaagtccgg ctcgacggcg
     7261 aggttcatca ggaactgctc gaggccctgc atggcgaagg cacgctcgaa cgggaacagc
     7321 agccacggcg tggcgaggat cgcgtagcgc ccgtccgagg ccagctcggc cgccgccgcg
     7381 cggacgtgtg ccacccgcgt gggatcgtcc atgtcgggcc acggataccg ttcgatggcg
     7441 tcgatggtcg tggcgtcggc catcgggtgg acggccggat accaggtgcc ctcctcgatc
     7501 tcgacctggc cgctccccca gtcgtcgatg aacgggctgt gcggcggtct ggcgcggttg
     7561 cgggcgatcg tctcggccgg gaaggcgtcg aacacgcccc ggacatccga gtggagtcgt
     7621 tcgagcacgg cctcgtcggg gaggacggtg ccgagctccg gccagtcgta gatgtagcga
     7681 tcctcgccct cgaggccgag gaggtgcttc aggccgcgat acggcgccag cttcattccc
     7741 gtcgcgttgc tggccccgat cacgatcggg acccggtcgg gttcctcgtg gttgatcgcg
     7801 gcgaggaccc gctcgcgacc cgacatcgtc acgacccggc acccccgatc gcctgcccag
     7861 ccgaggtacc ggccgcatcc aggccgagca acccgcgcgc cacgaccacc gccgccccgg
     7921 cgtccccggc gtacgcgtcg gcgccgatcc gctcggcgaa ctccgcgttg accggcgcgc
     7981 cccccacgat gatccgggcg ccgccgaggt cggtccggcg gagttcggcc acgatcgagc
     8041 ccatcgacgg catggtcgtc gtgagcagcg cggacagccc gaccaggtcc ggccgatggg
     8101 tcttgacggc ctcgacgaac tgttcggccg tgacgttggt cccgaggtcg atcacctcga
     8161 tgttcgcgcc gcgccacatc atcgccacga gattcttgcc gatgtcgtgg agatcgcctc
     8221 ggacggtccc gatgatcgcc cgcgcctccg gcttgatccc ggccttgacc aggatcggct
     8281 caaggagcgc catcgattcg cgcatcgcgc gagcggcgac cagcatctcg ggcacgaaga
     8341 tgagattggc ctggaagtcc tcgccgacgg cgtccatggc gtcggtcatc gcgtcaagga
     8401 tcgcctgggg tgtgatcccc ccggcgatgg cggcggcggt caatgcgacg gcgccgtccc
     8461 ggtcaccggt ctcgatcgcc tcgctgagcg cggccaggtc aacggcgccc atggttctcg
     8521 gctcgaaggg cgttcgtcgg catcgggctg tgggctccgg ggtgcgtggg gttggtcgcg
     8581 acgctcgcca tgagcgggag tatgaccggg cagggccagt cgacgtaggg acaaacgacc
     8641 cgagtgcgac cttcggccct gtcgggcggc ctctccaccg tggcaggatc gaccgagccc
     8701 tggcgcgttc ccgccggtcg agaccgaccc tcgtgacacc ggtggagagg accaacatgg
     8761 acgttccgca ggtggctgcc acctggctgc acacgctcgc cttcgtgatc gcctggggct
     8821 actacggc
//
LOCUS       DATDDI010000128         1849 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_335787, whole genome shotgun sequence.
ACCESSION   DATDDI010000128 DATDDI010000000
VERSION     DATDDI010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335787"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..741
                     /locus_tag="VIU37_01865"
     CDS             <1..741
                     /locus_tag="VIU37_01865"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012715.1"
                     /translation="AAFDLASPSGRPAPTGLLVVTMTQYEGGLAVQVAFPPEQARSLA
                     QAFSEAGWRQFHVAETEKYAHVTYFFNGGVEAPYPGEERLLIPSLKVATYDLAPEMKA
                     VAITDALVEAIGAGTYDFIVANYANPDMVGHTGKWDATVTALGVIDGCLGRVVAAVES
                     VDADDPTSAGAVLAITADHGNADELRDAEGHPVTAHSLNPVPLVLVGRAALGVRLADG
                     VLADVAPTLLDLAGLPRWAGMTGTSRLL"
     gene            779..1009
                     /gene="secG"
                     /locus_tag="VIU37_01870"
     CDS             779..1009
                     /gene="secG"
                     /locus_tag="VIU37_01870"
                     /inference="COORDINATES: protein motif:HMM:NF015779.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEY6012716.1"
                     /translation="MNPLLALGQILVSIALIVAILLQARGTGLSGTFGGDSAVYRSRR
                     GVERRLWQFTIVLLVLFVIFSLASFAFAPAAG"
     gene            1044..>1849
                     /locus_tag="VIU37_01875"
     CDS             1044..>1849
                     /locus_tag="VIU37_01875"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6012717.1"
                     /translation="MTQSMNRGDAAIATTDPAAPRRSPLTRTDRAVVGSLVVLFALIA
                     SLVGLPAVIPGAAPGAGASPSPSVAPPPEPRPYREGMVGHATSVSPLTAHSQADRDLV
                     ALVFSGLVRNGPDGTIVPDLARQWTVDATGAIWTFQLRPDARWQDGEPVTAEDVAFTI
                     RTLQDPSYTGPAAGSWQDVTVKTEGALTVVFTLSTPLGGFLQAATQPIAPSHILAGVP
                     VAQLADDPFNRQPIGSGPFALVSLTDAGAELRPAAALLGAELPAATASPAV"
BASE COUNT          235 a          711 c          630 g          273 t
ORIGIN      
        1 gccgccttcg accttgcgtc gccctcggga cggccggccc cgacgggcct cctggtcgtc
       61 acgatgacgc agtacgaggg gggactcgcg gtccaggtcg ccttcccgcc ggagcaggcc
      121 cgatcgctcg cccaggcctt ctcggaggcc ggctggcgcc agttccacgt ggccgagacc
      181 gagaagtacg cccacgtgac gtacttcttc aacggcggag tggaggcgcc gtatcccggg
      241 gaggaacgcc tcctcatccc gagcctgaag gtcgccacct acgacctggc ccccgagatg
      301 aaggccgtag cgatcacgga tgcgctggtc gaggcgatcg gagcgggcac ctacgacttc
      361 atcgtcgcca actacgcgaa cccggacatg gtcggccaca ccggcaagtg ggacgccacg
      421 gtgacggcgc tgggcgtcat cgatggctgc ctggggcgcg tggtcgcggc cgtcgaaagc
      481 gtcgacgccg acgacccaac gagcgccggt gccgtgctcg cgatcacggc ggaccatggc
      541 aacgccgacg agctgcgcga cgcggagggt catcccgtca ccgcgcattc gctcaatccg
      601 gtgccgctgg tcctggtcgg tcgggccgct ctcggcgttc ggcttgccga tggcgtcctc
      661 gccgacgtcg cgccgacgtt gctcgatctc gccggactcc cgcgctgggc cggcatgacc
      721 ggtacgtcac ggctcctgtg atagcatccg tcgcccaagc gttggaggaa tcggactcgt
      781 gaatccgctc ctggccctcg gccagatcct ggtgagcatc gcgctcatcg tcgccatcct
      841 gctccaggcc cgtggcaccg ggttgtcggg cacgttcggc ggcgattcgg ccgtctaccg
      901 cagccgccgc ggcgtcgagc gccggctctg gcagttcacg atcgtcctgc tcgtcctgtt
      961 cgtgatcttc tcgctggcct cattcgcgtt cgccccggcc gccggctgac cggcggctgc
     1021 ggcgcccggc cgcacgtgcg cgcgtgacgc agtcgatgaa ccgcggcgac gccgccatcg
     1081 cgacgaccga tcccgccgcc ccccggcgca gcccgctgac ccgcaccgac cgcgcggtcg
     1141 tcggcagcct cgtcgtcctc ttcgcgctga tcgcgagcct cgtcgggctc ccggcggtca
     1201 tccccggcgc cgccccagga gccggcgcga gcccgtcgcc gtccgtggcg cccccgcccg
     1261 aaccgcgacc gtaccgggag gggatggtgg gtcacgccac gtcggtcagc ccgctgaccg
     1321 cgcacagcca ggccgaccgc gacctggtgg ccctggtctt ctccgggctg gttcgcaacg
     1381 gccccgatgg gacgatcgtc ccggacctgg cccggcagtg gaccgtcgac gccaccgggg
     1441 ccatctggac cttccagctc cggcccgacg cacgctggca ggacggcgag ccggtcacgg
     1501 ccgaggacgt cgcgttcacg atccggaccc tccaggaccc gtcgtacacg ggcccggccg
     1561 ccggttcgtg gcaggacgtg acggtcaaga ccgagggcgc cctgacggtg gtgttcacgc
     1621 tttccacgcc gctcggcggg ttcctccagg cggcgacaca gccgatcgca ccgtcgcaca
     1681 tcctggccgg cgtcccggtc gcgcaactcg ccgacgatcc gttcaaccgg caaccgatcg
     1741 ggtccggccc gttcgcgctg gtcagcctca cggacgccgg ggcggagctc cgtccggccg
     1801 ccgccctgct cggggccgag ctgccggccg ccacggcatc gcccgcggt
//
LOCUS       DATDDI010000129         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_314788, whole genome shotgun sequence.
ACCESSION   DATDDI010000129 DATDDI010000000
VERSION     DATDDI010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314788"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VIU37_01880"
     CDS             <1..408
                     /locus_tag="VIU37_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012718.1"
                     /translation="LARQLPADTPPRYAGIGSPPPSPPTLAARPGSALPALTPPPSTA
                     PPVINTQTGFTIPALKSVAPATLTKTTTKTTLPPPPKTTTTTAGGGPKSVASKPGAPV
                     KKPPAPPPIKTPTATAGVYRPASVSGSGHGPTQ"
     gene            409..>1513
                     /locus_tag="VIU37_01885"
     CDS             409..>1513
                     /locus_tag="VIU37_01885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012719.1"
                     /translation="MGWLEDFGAVAGALGAKAASSAPSSYTSWNTRLRSSGYQTDYGQ
                     SSLVTWSDLGSGSLGSGITPPFSSIAPRTPKQPYVPAAPPERFDIKYPVRGFGGQGIA
                     PPPKMSTQGDVFGSITGAIGDTLGHLNLSNAVPWFMERVNVLADEASRAGVPGAAMVK
                     APLDVFATGVKAASDVIAPVLDAFPGFVRDGQLQDRAKLYRAIVTGGQADFGPLGPIS
                     NPLGTLAQYGAQFLIPGGQIPYMAGDVTGGPVVQATTSLFGKPVSAQDWEYQRYRQML
                     LGTIDPNQRATIEQRMGILRESIDIPPSVKIAIERNPNMTDSQLEQALSTAPEGRQWS
                     YQGGAPGAVQNFGTSLLFYLAEARAIGLAGRGVG"
BASE COUNT          219 a          573 c          524 g          197 t
ORIGIN      
        1 ctggcgcgcc agttgccggc cgacacgccg ccgcgctacg ccggcatcgg gtcgccgccg
       61 ccgtcgccgc cgaccctcgc ggcccggccg ggctccgcgc tgccggcgct caccccgccg
      121 ccgtcgaccg ctccgccggt catcaacacg cagaccgggt tcacgatccc ggcgctcaag
      181 tcggtcgcgc cggcgacgct caccaagacg acgaccaaga ccacgttgcc gccgccgccc
      241 aagaccacga cgacgacggc cggcggcggg ccgaagtcgg tcgccagcaa gccgggcgct
      301 cccgtcaaga agccgccggc cccgccgccg atcaagactc cgaccgccac ggcaggcgtc
      361 tatcgccccg cgagcgtgtc cggctccggc cacggaccga cgcagtagat gggctggctc
      421 gaggacttcg gcgcggtcgc gggcgccctc ggtgcaaagg cggcctcctc ggcgccgagc
      481 tcgtacacga gttggaacac gcggctgcgc tcgtcgggct accagaccga ctacgggcag
      541 agctcgctcg tcacctggag cgacctcggc tccggctcgc tcgggtcggg gatcacgccg
      601 ccgttctcgt cgatcgcgcc gcggacgccg aagcagccct acgtcccggc cgcgccgccc
      661 gagcggttcg acatcaagta cccggtccgc ggctttggcg gccagggcat cgccccgccg
      721 ccgaagatgt cgacgcaggg cgacgtgttc ggctcgatca ccggggcgat cggcgacacg
      781 ctcggccacc tgaacctgtc gaacgcggtg ccgtggttca tggagcgcgt caacgtcctc
      841 gccgacgaag cctcccgcgc gggcgtgccg ggcgcggcga tggtcaaggc gccgctggac
      901 gtgtttgcca ctggcgtcaa ggcggcgagc gacgtgatcg cgccggtcct cgatgccttc
      961 cccgggttcg tgcgcgacgg gcagctccag gaccgcgcca agctctaccg ggcgatcgtg
     1021 accggcggcc aggcggattt cggcccgctc gggccgatca gcaatccgct cgggacgctg
     1081 gcgcaatacg gcgcgcagtt cctgatcccc ggcggccaga tcccgtacat ggccggcgac
     1141 gtgaccggcg ggccggtcgt tcaggcgacg acgagcctgt tcggcaagcc ggtgtccgcc
     1201 caggattggg agtaccagcg gtatcggcag atgctcctcg gcacgatcga cccgaaccag
     1261 cgcgccacga tcgagcagcg catgggcatc ctgcgcgagt cgatcgacat tccgccgagc
     1321 gtcaagatcg ccattgagcg gaacccgaac atgaccgact cccagctcga gcaggcgctc
     1381 tcgaccgcgc ccgaggggcg ccagtggtcg taccagggtg gagctccggg cgcggtgcag
     1441 aacttcggca cgtcgctcct gttctacctc gccgaagccc gcgccatcgg gctcgccggc
     1501 cggggcgtgg ggg
//
LOCUS       DATDDI010000130         2446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_564582, whole genome shotgun sequence.
ACCESSION   DATDDI010000130 DATDDI010000000
VERSION     DATDDI010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_564582"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VIU37_01890"
     CDS             <1..504
                     /locus_tag="VIU37_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012720.1"
                     /translation="LAAGALTYTTTTTPVSNTLLGSFAYGLTQMNAALGARSRNATAF
                     VTDATTFWTAIGQGTDTAGFWVDPAGGPTGFRMTDSGQLTYWGKPIYFDANLGTNAAT
                     KLCIGGEWDTLKFYRGIEFRIDSSDVAGTRWDYNLVGFRGEEEIGIHAGSAVSVGAFQ
                     MLTTAIP"
     gene            510..1139
                     /locus_tag="VIU37_01895"
     CDS             510..1139
                     /locus_tag="VIU37_01895"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6012721.1"
                     /translation="MTVSAAFLVLDPPIDRLAALLERIRPVVSDVVIVVDMRTRLETV
                     DALSAWRDVTLVPFRWVDDFAAARNAGLAYCTGDWILHLDPDEWPSDRMLAFIEMVAA
                     SEWVPVVNWQGQSHPDPRGYLFWTTDGDGNGDPLIEHDWHCRLFRRELGHWYKPVHEQ
                     VMLEGFPEDRTRETPLLVKAPRSAFLYHRPDADRTAKDELYRRLERVPA"
     gene            1136..1660
                     /locus_tag="VIU37_01900"
     CDS             1136..1660
                     /locus_tag="VIU37_01900"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6012722.1"
                     /translation="MTYWAERGKTFEAEATARGWDRAEEPALTDLLATLQFESVLDVG
                     CGFGRVGQGLVEARPWLRYVGMDVSPDLVMAAQRRLPGREIVCADLVTWQDDRLFDLV
                     LAVSVLSHIRPEAVEGVIGKLWQAARHDLVVLDWDNVGAETPYQWGHDFGSLFASELH
                     CSKRLGALSLWHLR"
     gene            1657..2262
                     /locus_tag="VIU37_01905"
     CDS             1657..2262
                     /locus_tag="VIU37_01905"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6012723.1"
                     /translation="MSDLTVIIATAGQRPAMLDEAVRSVPKGVPIVVVDDATLGVGYA
                     RARLIGLQDVTSEYIAFLDDDDVLGPDWLTKSLALAEDGCDVVAASYWETDASLQPIH
                     SVALMPATLSRLLGGHCPVNDGALIRRSVLEGVTWHPERDTVMMFSLWLDLLARDARF
                     GVVTEPVWYHRVHEGQMSRTIGEQDAAWRAQAIAEHRPVPA"
BASE COUNT          349 a          916 c          823 g          358 t
ORIGIN      
        1 ctcgcggccg gcgcgctcac gtacacgacg accacgaccc cggtcagcaa cacgctgctc
       61 ggctcgttcg cctacggcct cacccagatg aacgcggccc tcggcgcgcg ctcgcggaac
      121 gcgacggcct tcgtcacgga cgcgacgacg ttctggaccg cgatcggaca gggcaccgac
      181 accgccggct tctgggtcga tccggccggc ggcccgacgg gcttccgcat gaccgactcc
      241 ggccagctca cctactgggg caagccgatc tacttcgacg ccaacctcgg cacgaacgcg
      301 gcgacgaagc tctgcatcgg cggcgagtgg gacacgctca agttctaccg cggcatcgag
      361 ttccgcatcg actccagtga cgtcgccggg acgcgctggg actacaacct cgtcggcttc
      421 cgcggcgagg aagagatcgg catccacgca ggctcggccg tctcggtcgg cgccttccag
      481 atgctcacca cggcgatccc gtaaccccca tgaccgtctc ggccgcattc ctcgtcctcg
      541 acccacctat cgaccgactg gcggcgctcc tggagcgcat ccgccccgtc gtatccgacg
      601 tggtcatcgt ggtcgacatg aggacgcggc tcgagacggt cgatgcgctg tcggcctggc
      661 gggacgtgac gctcgtcccg ttccgctggg tcgacgactt cgcagccgcc cgcaacgccg
      721 gcctcgccta ctgcacgggc gactggatcc tccacctcga ccccgacgag tggccgtccg
      781 accggatgct cgccttcatc gagatggtcg ccgcgtcgga gtgggtgccg gtcgtgaact
      841 ggcagggcca gagccacccg gacccgcgtg gctacctctt ctggacgacc gacggcgacg
      901 gcaacggcga cccgctcatc gagcacgact ggcactgccg cctgttccgt cgcgagctcg
      961 gccactggta caagcccgtc cacgaacagg tcatgctcga aggcttcccc gaggaccgga
     1021 cccgcgagac gccgctgctc gtcaaggcgc cgcggtcggc cttcctctat caccgtcccg
     1081 acgcggaccg gaccgcgaag gacgagctgt accgccggct cgagcgggtg ccggcatgac
     1141 gtactgggcc gagcgcggca agacgttcga ggccgaggcg acggcgcgcg gctgggatcg
     1201 ggccgaggag cccgccctga ccgacctgct cgcgacgctc cagttcgaga gcgtcctcga
     1261 cgtcggctgc ggcttcggtc gcgtcggcca gggcctcgtc gaagcccgcc cgtggctgcg
     1321 ctacgtcggg atggacgtgt cgccggacct cgtcatggcc gcccagcggc ggctgccggg
     1381 ccgggagatc gtctgcgccg acctcgtgac gtggcaggac gaccggctct tcgacctcgt
     1441 cctcgccgtc tcggtgctct cgcacatccg gcccgaggcc gtcgagggcg tcatcggcaa
     1501 gctctggcag gcggcccgcc acgacctcgt cgtcctcgac tgggacaacg tcggcgctga
     1561 gacgccgtat cagtggggcc acgacttcgg ctcgctcttc gcgtcggagc tccactgctc
     1621 gaagcgcctc ggagccctca gcctgtggca cctccgatga gcgacctcac cgtcatcatc
     1681 gcgaccgccg ggcagcgtcc ggcgatgctc gacgaggccg tccgctccgt ccccaagggc
     1741 gtgccgatcg tcgtcgtgga cgacgcgacg ctcggcgtcg gctacgcccg ggctcggctc
     1801 atcggcctgc aggacgtcac gagcgagtac atcgccttcc tcgacgacga cgacgtgctc
     1861 gggccggact ggctcacgaa gagcctcgcg ctcgccgagg acggctgcga cgtcgtcgcg
     1921 gcgtcgtact gggagacgga cgcctcgctc cagccgatcc actccgtggc gctcatgccc
     1981 gcgacgctct cgcgcctgct cggcggccac tgcccggtca acgacggcgc gctcatccgg
     2041 cgctcggtcc tcgagggcgt cacctggcac cccgagcgcg acaccgtgat gatgttcagc
     2101 ctctggctcg acctgctcgc ccgggacgcc cgcttcggcg tcgtcaccga gcccgtctgg
     2161 tatcaccggg tccacgaggg ccagatgagc cggacaatcg gcgagcagga cgccgcctgg
     2221 cgggcacagg cgatcgccga gcatcggccg gtgccggcat gaggccggac gtgggcatcg
     2281 tcatcgcgac cgccggcaag cggcccgagc tgctcgcgat cgagctcgac agcatcggcg
     2341 cggcgttcct ctacgcgaag cggcacggcg tccgctgcga ggtcatcgtc gagacggaca
     2401 ccgagggccg gggcgtggcc gcgacgctgg ccgcgggcct ggggcg
//
LOCUS       DATDDI010000131         1719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_668773, whole genome shotgun sequence.
ACCESSION   DATDDI010000131 DATDDI010000000
VERSION     DATDDI010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_668773"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..1251)
                     /locus_tag="VIU37_01910"
     CDS             complement(226..1251)
                     /locus_tag="VIU37_01910"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6012724.1"
                     /translation="MSSDERTVHGVGGPGPSGSLDVERDSDVPISTQIFWQITYQIDS
                     GRMLPGTRLAPVRELGAALRVNPNTIRAVYRRLADAGYVTSRHGAGTHVAERPPQRRG
                     TEALAGIVAEMTRRAAHAGFTADELAAATFAAAAERKHPGPLVRVLFAECTNADAGYD
                     AERLVDAFPGMIEAEGTLLDDLPDRLERFHYDLVATTTFHADEAQVLVAGRIPVVAML
                     VGPGYLELVHEIAGLPNGSRVGLVCASERGTDNILETLALAGTRGVDIVSALIGATED
                     LQVVDRTADLILLSREALVAGLDRSFSRPERIRPWTYDFDPSGLELLRRAVEHVASTR
                     PAEAATA"
     gene            complement(1512..>1719)
                     /locus_tag="VIU37_01915"
     CDS             complement(1512..>1719)
                     /locus_tag="VIU37_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012725.1"
                     /translation="FWDDPTRPETRSILRAAGWAARRMDALAGSGLERRLLADLASVR
                     SPVQAADGAGIYRHALTEVGQPVG"
BASE COUNT          224 a          604 c          635 g          256 t
ORIGIN      
        1 accgacggcg ccccgccggc tcgttcggca ttcatccggc cggccagccg gcggatcccg
       61 gcggtgtcgg ccacgacgag gtcgccgcgc gtcccgatca gcgacccgcc gacggcgtac
      121 cggcggcggg gttcgcggcg gatatggaag tcgcgtgtca ccggggcatc gtacgcgtcg
      181 ccatggaccc cgaccgggct tcgcaggatg cgggcgtgcc gcgggtcagg ccgtcgccgc
      241 ctcggcgggc cgggtgctgg cgacgtgctc gacggcgcgc cgcagcagct ccagtccgga
      301 cggatcgaag tcgtaggtcc acggccggat ccgttccggc cgggagaagg agcggtcgag
      361 cccggccacc agcgcttcgc gggacagcag gatgaggtcg gcggtccggt ccacgacctg
      421 gagatcctcg gtggcgccga tgagcgcgga cacgatgtcc accccgcggg tcccggccag
      481 ggccagtgtc tcgaggatgt tgtccgtgcc gcgttcggag gcgcacacga gcccgaccct
      541 cgacccgttc ggcagcccgg cgatctcgtg gacgagctcg aggtagcccg gaccgacgag
      601 catcgccacc accgggatgc ggccggcgac caggacctgg gcctcgtcgg catggaacgt
      661 ggtcgtggcg accaggtcgt agtggaaccg ctcgagccgg tcggggaggt cgtcgagcag
      721 cgtgccctcc gcctcgatca tgcccgggaa ggcgtcgacc aggcgctcgg cgtcgtagcc
      781 cgcgtcggcg ttggtgcatt ccgcgaacag gacccggacg agcgggccgg ggtgcttgcg
      841 ctcggccgcg gcggcgaagg tggcggcggc cagctcgtcg gcggtgaagc cggcatgcgc
      901 cgctcgccgg gtcatctcgg ccacgatccc ggccagggcc tcggtgccgc gtcgttgcgg
      961 cggccgctcg gcgacgtgcg tgcccgcccc gtgccggctg gtgacatagc cggcgtcggc
     1021 gaggcggcgg tagaccgccc ggatcgtgtt cgggttcacg cgcagcgctg cccccagctc
     1081 gcgcaccggg gcgagccgtg tgccggggag catccgcccg gaatcgatct ggtaggtgat
     1141 ctgccagaag atctgcgtgg agatcgggac gtcggaatcc cgctcgacgt cgagggaccc
     1201 gctgggcccc ggtccgccga cgccgtggac ggttcgttcg tcacttgaca tagcgtggta
     1261 gtccaactat cgtccgattt ggcctagttc actataacaa cgaaggcagg ttgcccgatg
     1321 gtcgggttga tcttgatcct cgccgtcctg gtgttttcgg ccgtcgcgtt cggcgccggc
     1381 gtcgacagcc gcgaaggatc cacggatagc cggcgaccgg cgtcgccgat cggtctgagc
     1441 tagctcgcac actttgccca ctcccctccg ttccggctcg cggcgcgcag gccgcgagcc
     1501 tgggacggac ttcaccccac cggctgaccc acctcggtga gcgcgtgccg gtagattccg
     1561 gcaccgtcgg ccgcctggac gggcgatcgt acgctggcca ggtccgccag gagccggcgt
     1621 tccagtcctg agcccgccaa tgcgtccatg cggcgtgccg cccagcccgc cgcccgcagg
     1681 atcgagcgcg tctcgggtcg cgtcgggtcg tcccagaac
//
LOCUS       DATDDI010000132         2218 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_210937, whole genome shotgun sequence.
ACCESSION   DATDDI010000132 DATDDI010000000
VERSION     DATDDI010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210937"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1095
                     /locus_tag="VIU37_01920"
     CDS             <1..1095
                     /locus_tag="VIU37_01920"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6012726.1"
                     /translation="QDKLNQGFQAGGKNYAITIVQKDGQSDPAKAAQVANDLITTDQV
                     DLILATSTPENNNPIADAAEAAGVPLIATVEPWEAFVFPRQKDPAKPVPFKFTYIFCF
                     GTAEFAKTYISMWDDIPTNKKVGVMWPNDADGNAIRRALGPELEKAGYTIVDPGAYED
                     GTNDFSAQIAKFKQENCEIFNTFPIPPDFATFWKQAAQQGYVPKIAQIAKTGLFPSQI
                     EALGDLGPGLASAAYWTPTFPYSSTFLGTSSADLASGYTAQTGRQWSQDIGTTVALFD
                     AATSAIAAATDPKDKVALAAAIGKLNITSTIGKIDFTSGPFPNVSTAPIIGGQWITDP
                     TGKFKVDFVLVEHATDPNVPIAAKLAPYRS"
     gene            1111..1857
                     /locus_tag="VIU37_01925"
     CDS             1111..1857
                     /locus_tag="VIU37_01925"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012727.1"
                     /translation="MINPPPSTAEPLLAGRSIHKWFGRLHVLDAVEFSVEAGQSVGIV
                     GPNGAGKTTLLDVLAGAQAPTDGTVTFRGSDVTRTNVARRCRMGIGRTHQVPRPFTGM
                     TVFENVYVGATAGGGLHGAAANERCLEVLGLTGLLPLSNRRAMSLGLLHRKRLELARA
                     LAARPDVLLLDEIGAGLTDAEAEELLESIQRLRESGTTIVWIEHIVHVLVRAIDRLVC
                     MDAGKVIADGSPAEVLQDARVIDAYLGRRE"
     gene            1854..>2218
                     /locus_tag="VIU37_01930"
     CDS             1854..>2218
                     /locus_tag="VIU37_01930"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6012728.1"
                     /translation="MSLLEVDSVVARHGSLTAVRNVSLAVDQGSTLALVGANGAGKTT
                     LLRVIAGAHVPSEGRVRLDGVDITGLGAHERVRLGVALVPEGRKLFPDLTVEENLRTA
                     RGKGLTGRWTVETVFDAFP"
BASE COUNT          371 a          786 c          730 g          331 t
ORIGIN      
        1 caggacaagc tcaaccaggg cttccaggcg ggtggcaaga actacgcgat cacgatcgtc
       61 cagaaggatg gccagtccga cccggcgaag gccgcccagg tcgccaacga cctgatcacg
      121 accgatcagg tcgacctgat cctcgcgacc tcgacgcccg agaacaacaa ccccatcgcc
      181 gatgcggccg aggccgcggg ggtgccgctg atcgccaccg tcgagccctg ggaggcgttc
      241 gtcttcccgc gccagaagga cccggcgaaa ccggtgccct tcaagttcac ctacatcttc
      301 tgcttcggca cggcggagtt cgccaagacc tacatctcga tgtgggacga catcccgacc
      361 aacaagaagg tcggcgtcat gtggccgaac gacgccgatg gcaacgccat ccgacgcgcc
      421 cttgggcccg agctcgagaa ggccggctat accatcgtgg acccgggcgc ctatgaggac
      481 gggaccaacg acttctccgc gcagatcgcc aagttcaagc aggagaactg cgagatcttc
      541 aacacgttcc cgatcccgcc cgacttcgcg acgttctgga agcaggccgc ccagcagggc
      601 tacgtcccga agatcgccca gatcgcgaag accgggttgt tcccgtcgca gatcgaggcg
      661 ctcggcgacc tgggaccggg cctcgccagc gccgcctact ggaccccgac gttcccctac
      721 tcgtcgacgt tcctcgggac gtcgtcggcc gaccttgcca gcgggtacac cgcccagacg
      781 gggcggcagt ggagccagga catcggaacg acggtcgcgc tcttcgacgc ggccacgagc
      841 gccatcgccg cggccacgga tccgaaggac aaggttgccc tggcggcggc catcggcaag
      901 ctcaacatca cctcgacgat cggcaagatc gacttcacgt cgggcccgtt cccgaacgtc
      961 tcgacggctc cgatcatcgg cggccagtgg atcaccgatc cgacgggcaa gttcaaggtc
     1021 gacttcgtcc tcgtggagca cgcgaccgac ccgaacgtcc cgatcgccgc caagctcgcc
     1081 ccgtaccgct cgtagggtct ccggcagcag gtgatcaacc cgcctccgtc gaccgctgag
     1141 ccgctcctcg cgggccgctc gatccacaag tggttcgggc ggctccacgt cctggacgcg
     1201 gtcgagttct cggtggaggc tgggcaatcc gtcgggatcg tcgggccgaa cggggccggc
     1261 aagacgacgc tgctcgacgt cctggcgggg gcccaggcgc cgaccgacgg gacggtgacg
     1321 ttccgcggct ccgatgtcac ccgaacgaac gtcgcgcgtc gctgtcgcat gggcatcggg
     1381 cggacgcacc aggtcccccg tccattcacc gggatgaccg tcttcgagaa tgtgtacgtc
     1441 ggggccaccg ccggcggagg gctgcacggc gcggcggcga acgagcgctg cctcgaggtg
     1501 ctcgggctga ccggcctcct cccgctctcg aaccgccggg cgatgtcgct cggactgctc
     1561 caccgcaagc ggctcgagct ggcaagggcc ctggccgccc gtcccgacgt gctgctcctc
     1621 gacgagatcg gcgccggcct gaccgacgcc gaagccgagg aactgctcga gtcgatccag
     1681 cggctccgcg aatccgggac gaccatcgtc tggatcgagc acatcgtcca cgtcctcgtc
     1741 cgggcgatcg atcgcctggt ctgcatggat gccggcaagg tgatcgccga cgggtcgccc
     1801 gcagaggtgc tccaggatgc acgggtgatc gacgcctacc tcggacgtcg cgaatgagcc
     1861 tgctcgaggt cgattcggtc gtggcgcggc atggctcgct gaccgccgtg cgcaacgttt
     1921 cgctggcggt cgatcagggt tccacgctcg ccctcgtcgg cgcgaacggt gccggcaaga
     1981 cgacgctcct ccgcgtcatc gccggtgccc acgtcccgag cgagggtcgc gttcgcctgg
     2041 acggcgtcga catcaccggc ctgggcgccc acgagcgagt ccggctcggt gtggcgctcg
     2101 ttccggaggg ccggaagctc ttcccggacc tgacggtcga ggagaacctc cggacggcca
     2161 ggggcaaggg cttgacggga cggtggacgg tcgagaccgt cttcgatgcc tttcccat
//
LOCUS       DATDDI010000133         2825 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_190095, whole genome shotgun sequence.
ACCESSION   DATDDI010000133 DATDDI010000000
VERSION     DATDDI010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190095"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..491
                     /locus_tag="VIU37_01935"
     CDS             60..491
                     /locus_tag="VIU37_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012729.1"
                     /translation="MEALGRTINTIAIADGVYINMRDGGGVAFDCYLAAAAGDTYTLT
                     EAKTAAGGSSQVLATITQYYTCTGDGTDTWTKRTQAAASTVVTAAAATENCAYFEIHG
                     VELSDSFDYVKVASTGAGIVIAILHDLTVQRKPSNLAAIGV"
     gene            494..985
                     /locus_tag="VIU37_01940"
     CDS             494..985
                     /locus_tag="VIU37_01940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012730.1"
                     /translation="MSVWTDPNGLRATVVGYAISKTYTVATETATLFNVSGLVLVTGI
                     VGKVTTAMTVANTIKLQANPTTGTSSDLCAATDLGTTDTPAGDLITLSGAPTAAPTVG
                     IGAVQVGGTAKVGTDYLGGGGQWYIAAGTIQQVTTGTGPDGVIVWTVTYVPIETDAAV
                     TAA"
     gene            1084..1419
                     /locus_tag="VIU37_01945"
     CDS             1084..1419
                     /locus_tag="VIU37_01945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012731.1"
                     /translation="MPKITKAHGATYGDPDPERAEPEVTPEPEVTPEPEVKDDEGQDD
                     EGHEPEVKDDEGHNPEVKDDEGRDDEGHEPDDKSTASAVTSGGKPPISATKTTTGGAA
                     KTAAPGRRK"
     gene            1435..2085
                     /locus_tag="VIU37_01950"
     CDS             1435..2085
                     /locus_tag="VIU37_01950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012732.1"
                     /translation="MPFNAAGKNAALSGGLGNVIAYIGVLQNGEPGTSTSFSGSEATG
                     GSYARQAVTWAAASGGQRASSADLTFPVPAGTYSDFLFMSAVTAGTYYGYAPINGSSK
                     QFGVVPDSTAYGADLIYSPAHGLAAGDQVRVFNVFSLSLPASTASALAEDVRYFVIST
                     GLTTDAFKLSTTSGGSAVDLTGVGELFWQKVIPETFASAGQIVITAGSLVLDATTI"
     gene            2142..>2825
                     /locus_tag="VIU37_01955"
     CDS             2142..>2825
                     /locus_tag="VIU37_01955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012733.1"
                     /translation="MPVTIFSDSFTGTNGSSPGSGWSILYSGTGTPSATIQGNQLALD
                     GGTEKIALQYTGSNVADFDITFKVTIDPDCYQGEIWVRDTTATFDGDGLFLTLYGDGS
                     VLLGDAVGYSYTTIASTATGFFTPGSAYRVRFIGSGSAVSAYVWADGGSQPGSPTVSG
                     TTSVTAANAIYLGSNSPSNGQINYFDDFVIADPRDLIYLAAGTTAYSTASGTSVTPGY
                     PAGLASGDTL"
BASE COUNT          487 a         1078 c          891 g          369 t
ORIGIN      
        1 aaccccctgc cgggccacct tcagaacggc aatcaacccc cgttcggaaa ggcaccaaca
       61 tggaagccct cgggcgaacg atcaacacca tcgccatcgc tgacggcgtg tacatcaaca
      121 tgcgcgacgg aggcggcgtc gccttcgact gctacctcgc cgcggccgcg ggcgacacct
      181 acaccctcac cgaagcgaag accgcggccg gcggcagctc gcaggtgctg gccacgatca
      241 cgcagtacta cacgtgcacc ggcgacggca ccgacacgtg gacgaagcgc acccaggccg
      301 ctgcgtccac cgtcgtcacc gcggccgccg cgaccgagaa ctgcgcctac ttcgagatcc
      361 acggcgtgga gctgtccgac agcttcgact acgtcaaggt cgcgtccacc ggcgccggga
      421 tcgtgatcgc gatcctccac gacctcacgg tccagcggaa gccgtccaac ctcgccgcga
      481 tcggagtctg atcatgagcg tctggaccga ccccaacggg ctccgggcca ccgtcgtggg
      541 gtacgcgatc tcgaagacct acaccgtggc gaccgagacc gcgaccctgt tcaacgtctc
      601 cggcctggtc ctcgtgaccg ggatcgtcgg caaggtcacc accgccatga ccgtggccaa
      661 cacgatcaag ctccaggcca acccgaccac cggcacgtcg tccgatctgt gcgcggcgac
      721 ggacctgggc accaccgaca ccccggccgg tgacctgatc accctgtccg gcgcgcccac
      781 cgccgcgccg acggtcggca tcggcgccgt ccaggtgggc ggcaccgcca aggtgggcac
      841 ggactacctg ggcggcggcg gccagtggta catcgcggcc ggcaccatcc agcaggtcac
      901 caccgggacc ggtccggacg gcgtcatcgt ctggacggtc acctacgtcc cgatcgagac
      961 cgacgccgcg gtgacggcgg cctgatcgtg ctgtggatct gcgcggggtg ctcgacgccg
     1021 tacagcgtcg gcgccccgcg ctgcccgcag tgcggatcgc gcgacttcga ggaggaccac
     1081 ccgatgccga agatcaccaa ggcccacggg gccacgtacg gcgaccctga ccccgagcgc
     1141 gccgagcccg aggtgacccc cgagccagag gtgaccccgg agcccgaggt caaggacgac
     1201 gagggtcagg acgacgaggg tcacgagccc gaggtcaagg acgacgaggg ccacaatccc
     1261 gaggtcaagg acgacgaggg ccgggacgac gagggtcacg agcccgacga caagagcacg
     1321 gcgagcgccg tgacctccgg gggcaagccc ccgatctccg ccaccaagac caccacgggc
     1381 ggagcggcca agaccgccgc gcccggtcgg cgcaagtaag gaaggggccc ggccatgccg
     1441 ttcaacgccg caggcaagaa cgccgccctc tcgggcgggc tcggcaacgt catcgcctac
     1501 atcggcgtgc tccagaacgg cgagccgggc acctccacct ccttcagcgg cagcgaggcc
     1561 accggcggta gttacgcccg ccaggccgtc acctgggccg ccgcctccgg cggccagcgt
     1621 gccagctccg ccgacctcac cttccccgtg ccggccggca cctactcgga cttcctgttc
     1681 atgagcgccg tcaccgccgg cacctactac gggtacgcgc cgatcaacgg cagctccaag
     1741 caattcggcg tggtcccgga ctcgaccgcg tacggcgctg acctgatcta ctcccccgcc
     1801 cacggcctgg ccgcgggtga ccaggtgcgc gtgttcaacg tcttctccct gagcctgccc
     1861 gcgtccaccg cctcggccct ggccgaggac gtccgctatt tcgtgatctc gaccgggctc
     1921 accaccgacg ccttcaagct ctccacgacc tccgggggct cggccgtgga cctgaccggc
     1981 gtgggcgaac tgttctggca gaaggtcatc ccggagacct tcgcctcggc cggacagatc
     2041 gtgatcacgg ccggctcgct ggtcctggac gccaccacca tctgaccctg agaccctgac
     2101 cctgggcctg cgagggtcag cccgaggtca ggagggacgt cgtgccggtc acgatcttct
     2161 cggacagctt caccgggact aacggcagct ctcccgggtc cggctggtcc atcctctact
     2221 cgggcaccgg cacgccgtcc gccacgatcc agggcaacca gctcgcgctc gacggcggca
     2281 cggagaagat cgccctccag tacaccggca gcaacgtcgc cgacttcgac atcaccttca
     2341 aggtcacgat cgaccccgac tgttaccagg gcgagatctg ggtccgggac accacggcga
     2401 ccttcgacgg ggacggcctg ttcctgaccc tgtacggaga cgggtccgtc ctgctgggcg
     2461 acgcggtcgg ctacagctac accacgatcg cgtcgaccgc cacgggcttc ttcacccccg
     2521 gctcggccta ccgggtgcgg ttcatcggga gcggatcggc agtctcggcc tacgtctggg
     2581 cggacggcgg cagccagccc ggaagcccga ccgtgtccgg gaccacctcg gtcacggcgg
     2641 ccaacgcgat ctacctgggc tcgaacagcc cgagcaacgg acagatcaac tacttcgacg
     2701 acttcgtcat tgccgacccg cgggacctga tctacctggc ggccggcacc accgcctact
     2761 ccacggcgag cggcacgagc gtcacccccg gctacccggc cggcctggcg tccggcgaca
     2821 ccctg
//
LOCUS       DATDDI010000134         1858 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_439866, whole genome shotgun sequence.
ACCESSION   DATDDI010000134 DATDDI010000000
VERSION     DATDDI010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439866"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VIU37_01960"
     CDS             <1..511
                     /locus_tag="VIU37_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6012734.1"
                     /translation="VQLAAPALRCEPERDIAFRAYAELALSWMPEPTSEGLGLRLRRL
                     YPHARVTETATHWTAWRDAEGKAEAAEAWWHGASLARVAYDAQGLILEANEAATALLG
                     RAMVGHHWQEFVTPGSTEQVSAMLGILADVGAAESRFRMPGSDGTLIEFDSYTEVDGE
                     RYVTVIRPR"
     gene            complement(582..>1858)
                     /locus_tag="VIU37_01965"
     CDS             complement(582..>1858)
                     /locus_tag="VIU37_01965"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6012735.1"
                     /translation="GGTVVVPPRSGGWRLAVQAVGDTHPTVVVADPTTWPLLAAAPAL
                     IGSRIRVSTGRRHWPAFATLADLAIDADGTAGGPACRPADAPALVSWTTGTTGRPHAV
                     VRTHGVLAAQHAAIRGLRVPRPGDVDLVGLPAMALHDLACGVPIVMPPPARDDDRGTS
                     LRALVTRAAVTTAVGFPALFERLVDGAEPGDLPGLRAIHVGGAPVGIELLERLALVAP
                     NAAVVVVYGATEAEPIAAVEASVLRSLTGRAAPGAGMLVGRPCDGIDVRLVPIEGRPS
                     GPGSGAVLGRILVRGDRVARDAVRSDADGWLDTGDVGTIGLDGWLRLLGRASNMLAGG
                     IAPAEIEEPVTALEEVEASALVPVPGRDGPRLVLAVQPAVDVHATDLRARVASMVSER
                     GWALDRVALVRRLPRDTRSGKVDYRRLRAMVG"
BASE COUNT          259 a          705 c          668 g          226 t
ORIGIN      
        1 ggtgcagctg gccgcccccg cgcttcgatg cgagcccgaa cgggacatcg cctttcgcgc
       61 ctacgcggag ttggccctct cgtggatgcc ggagccgacg tccgagggcc ttgggctgcg
      121 gctgcggcgg ctctatccgc acgcgcgggt cacggagacg gccacccact ggaccgcatg
      181 gcgcgatgcg gagggaaagg cggaagcggc ggaggcctgg tggcacggtg cgtcactcgc
      241 cagggtcgcg tacgacgcgc agggcctcat cctcgaggca aacgaagcgg ccaccgccct
      301 cctcggcaga gcgatggtcg ggcatcactg gcaggagttc gtgacgcctg ggtcgaccga
      361 gcaggtgtcg gcgatgctcg gcatccttgc cgatgtcgga gcggccgagt cgcggttccg
      421 catgcccggc agcgacggca cgctgatcga gttcgattcc tacacggaag tcgacggcga
      481 acggtacgtc accgtcatcc gtccccgctg acgagcggtc cggccggccg gcgcgccccg
      541 cggcccgctg cacgtgacgc caaggcagcg gcctccgatc atcagccgac catggcccgt
      601 agacgccggt agtccacctt cccgctccgc gtgtcgcgcg gcaaccgacg gaccagggcg
      661 acacggtcca gcgcccagcc tcgctccgac accatcgacg cgactcgggc ccgcaggtcg
      721 gtcgcgtgga cgtccacggc cggctgcacg gcgagcacca ggcggggtcc atcgcggccc
      781 ggcaccggca ccagggccga ggcctccacc tcctcgagcg ccgtcaccgg ttcctcgatc
      841 tccgcgggcg cgatcccgcc ggcgagcatg ttcgacgctc gacccagcag ccggagccat
      901 ccgtcgagac cgatcgtgcc cacgtcgccc gtgtcgagcc agccgtcggc gtcggaacgc
      961 accgcatcgc gcgcgacccg gtcgccgcgg acgaggatcc gcccgagcac cgcgcccgag
     1021 cccggcccgc tcgggcgtcc ctcgatcgga acgagacgca catcgatgcc gtcgcagggc
     1081 ctgcccacga gcatgccggc acccggtgcc gctcgcccgg tgagcgatcg cagcacgctg
     1141 gcctcgaccg cggcgatcgg ttcggcctcc gtcgccccgt acaccacgac gacagcggcg
     1201 ttcggtgcca ccagcgcgag ccgctccaga agctcgatcc cgacgggtgc ccccccgacg
     1261 tggatcgcgc gcaagccggg caggtccccg ggctcggccc cgtccacgag gcgttcgaac
     1321 agcgcgggga agcctaccgc ggtcgtgacg gctgcccgcg tgaccagggc gcggagcgac
     1381 gtcccacgat catcgtcgcg cgcgggcggc ggcatcacga tcggaacgcc gcacgcgaga
     1441 tcgtggagcg ccatggcggg cagccccacg agatcgacgt cccctggccg ggggacacgc
     1501 aaccctcgga tggctgcgtg ttgggcggcg agcacgccgt gtgtccggac gacggcgtgg
     1561 ggacggccgg tcgtgccggt cgtccagctg acgagcgcgg gtgcgtctgc gggccggcat
     1621 gctggcccgc ccgcggtgcc gtcggcgtcg atcgccaggt cggcgagcgt cgcgaacgcc
     1681 ggccagtgcc ggcggcccgt gctgacccgg attcggctgc cgatgagcgc cggcgcggcc
     1741 gccagcagcg gccaggtcgt cgggtcggca accaccacgg tcgggtgcgt gtcaccgacc
     1801 gcctggaccg cgagtcgcca gccgccggac ctcggtggca cgaccaccgt gccacccg
//
LOCUS       DATDDI010000135         1651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_439876, whole genome shotgun sequence.
ACCESSION   DATDDI010000135 DATDDI010000000
VERSION     DATDDI010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439876"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..303)
                     /locus_tag="VIU37_01970"
     CDS             complement(<1..303)
                     /locus_tag="VIU37_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012736.1"
                     /translation="MSVRSNHVQRSFGPASAFAAGLREAWARPFIGAAAATGSGLVVG
                     LLSAQFLPRGPVTAGQGLAVMLSGLALGLVAGFAWPSRAAGLLAMLAYMAAFEIGRL"
     gene            527..>1651
                     /locus_tag="VIU37_01975"
     CDS             527..>1651
                     /locus_tag="VIU37_01975"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012737.1"
                     /translation="MTAAALPIQPSPFAVLRRRAFVYIWSAQLVSTIGDALTSLAAGI
                     IVYRLTGSALSVGLMLMATAVPALVFGLIAGVVVDRYDRKRIMVTADLLRAVVVFTIP
                     FLVNVHVVWLYVAVMVSASITQFFSPANDSVLPEIAPEEELGAANAIMAIAQFGSTAV
                     GFALAGLLASSQSIDVVFWIDSGTFLFSAFMISLVRIAPLVVEELTTVREMIRNLTFG
                     ARFIARSPMLRSFNAVKAPILVSFGMQNVLLLPFAISALHATEFEYGIQEGLTSVGFV
                     VGSLLMARFSDRLREGQWLVLSWTGMGLFGLAYALSSSVWLAIALISLSGLLNAPSFV
                     AGRLIAQRNTPREMRGRVFSTSGVISTVLFLVGMGLAGLAD"
BASE COUNT          217 a          588 c          567 g          279 t
ORIGIN      
        1 caggcgaccg atctcgaagg cggccatgta ggccagcatg gccagcaggc cggcggcccg
       61 cgacggccag gcgaaccccg ccacgagccc cagcgcgagg ccgctgagca tcacggccag
      121 gccctggccg gccgtcaccg ggcccctcgg caggaactgg gccgacagca gacccacgac
      181 caggccagag ccggtggccg cggccgcccc gatgaacggc ctggcccacg cctcccggag
      241 tccggcggca aacgccgacg ccggcccgaa cgatcgctgg acatggtttg accgaaccga
      301 catctgttgc ctctcgcccg gacccgccgt caggcccgtc ctgacatggg catcggggac
      361 agggtcactc cgggcatcgc ccgatgggaa gtgccggacc gcctcgaagg tccgggccga
      421 gggtcgtcag ttcgacgcgc gcaaccggcg aacggcggcc cggccgtcgt gcacaatggg
      481 ccgacgcccg gggaccgtca ctcagcaccc agggaggggt cgtcccgtga ccgctgcggc
      541 tctgccgatc cagccatccc cgttcgcggt cctccgccgg cgggcgttcg tctacatctg
      601 gagcgcccag ctcgtctcga cgatcggcga cgcgctgacc agcctggccg ccgggatcat
      661 cgtctaccgg ctgacgggct cggcgctcag cgtcgggctc atgctgatgg cgacggcggt
      721 cccggcactc gtgttcggcc tgatcgccgg ggtcgtggtc gatcggtacg accgcaagcg
      781 gatcatggtg accgccgacc tgctccgggc ggtggtcgtc ttcacgatcc cgttcctcgt
      841 caacgtgcac gtcgtctggc tgtacgtggc agtgatggtc tcggcctcga tcacgcagtt
      901 cttctcgccc gccaacgact cggtgctgcc ggagatcgct ccggaggagg agctcggtgc
      961 ggcgaacgcg atcatggcga tcgcccagtt cggctcgacc gcggtcggct ttgcgctggc
     1021 cgggttgctc gcgtcatcgc agtcgatcga cgtcgtcttc tggatcgact cgggcacgtt
     1081 cctgttctcg gcgttcatga tcagcctggt ccggatcgcg ccgctggtgg tcgaggagct
     1141 gaccacggtc cgcgagatga tccggaacct gaccttcggc gcccggttca tcgcccgcag
     1201 cccgatgctg cgctcgttca acgcggtcaa ggccccgatc ctggtctcgt tcgggatgca
     1261 gaacgtcctg ctgctgccgt tcgcgatcag tgccctccac gcgaccgagt tcgagtacgg
     1321 gatccaggag ggcctgacgt cggtcggctt cgtggtcggc agcctgctca tggcccgctt
     1381 ctccgatcgc ctgcgcgagg gccagtggct ggtcctcagc tggacgggga tggggctgtt
     1441 cggcctcgcc tacgcgcttt cctcgtcggt ctggctggcg atcgccctga tctcgctgtc
     1501 gggcctgctc aacgcgccgt cgttcgtggc ggggcggctg atcgcccagc gcaacacgcc
     1561 ccgggaaatg cgcggacggg tcttctcgac gagcggcgtg atctcgaccg tcctgttcct
     1621 cgtcgggatg ggcctggccg gcctggccga c
//
LOCUS       DATDDI010000136         1694 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_377423, whole genome shotgun sequence.
ACCESSION   DATDDI010000136 DATDDI010000000
VERSION     DATDDI010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377423"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1611)
                     /locus_tag="VIU37_01980"
     CDS             complement(<1..1611)
                     /locus_tag="VIU37_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012738.1"
                     /translation="MLTLLGFGAGDLAADELFAAWRTFFSRLATTGPVVLVFEDLHWA
                     DPGLLDFIDHLLEWSRDQPIYVLTLARPELLERRPEWGAGRRNFLSLGLEPLAEASMR
                     ELLAGLVPGLPKPTVDAIVARADGIPLYAVETVRMLVADGKLREESGAYALVGDLAAL
                     AVPETLTALIGARLDALEPADRALLQDAAVLGQSFTLAGLAAVSGRSGAEIEPRLAAL
                     GKREILSIRSDPRSPERGQFAFVQALIREVAYNTLTKRDRRERHLAAARFFEGLGSDE
                     LAGALAGHYLAAHANSPAGPEADGLAIQARIALTAAAERATALGSPTQALQFLDQALS
                     IEVDPARQPELLERAAGEAMAAGLYTRSKELAARGMAAYVAAGDHLGEARMLVIESRA
                     LVSNLQTSESQALLLERLPDFDDLFGRREHVDLVLRLANTYWLDDDLESAVTWAARAL
                     AEAERFDIVPSIVDGLIVKGGALGYLGRGYEGISTLRGAYALAEAHGNQVGMLRAQAN
                     LSDAQIARDPRAALATARAGLDGVRRIGR"
BASE COUNT          235 a          592 c          647 g          220 t
ORIGIN      
        1 gcggccgatg cgacggacgc cgtcgagtcc ggcccgggcc gtggccagcg ccgctcgcgg
       61 atcccgggcg atctgggcgt cgctcaggtt ggcctgggcg cggagcatcc cgacctggtt
      121 gccgtgcgcc tcggcgagcg catacgcgcc tcgcagcgtg ctgatgccct cgtacccgcg
      181 cccgaggtag ccgagagccc cgcccttgac gatcagcccg tcgacgatgc tcgggacgat
      241 gtcgaagcgc tcggcctcgg ccagggcccg agcggcccag gtcaccgccg actcgaggtc
      301 gtcgtcgagc cagtacgtgt tggccaggcg caggacgagg tcgacgtgct cccgtcgccc
      361 gaagagatcg tcgaagtccg ggagccgctc gaggaggagg gcctgcgatt cgctcgtctg
      421 gaggttggag acgagggcgc gcgactcgat gacgagcatc cgtgcctcgc ccaggtggtc
      481 gccggccgcg acgtaggccg ccatcccccg ggcggccagc tccttggagc gagtgtagag
      541 cccggccgcc atggcctccc ccgcggctcg ttcgagcagc tccggctggc gagccgggtc
      601 gacctcgatc gacagggcct ggtccaggaa ctggagcgcc tgcgtcggcg atcccagcgc
      661 ggtcgcccgc tcggcggcgg cggtcagggc gatccgggcc tggatcgcga ggccgtcggc
      721 ctccgggccg gccgggctgt tcgcatgggc tgccaggtag tggccggcaa gcgcgccggc
      781 gagctcatcg ctgccgaggc cctcgaagaa gcgggccgcg gccaggtgcc gctctcgccg
      841 gtcgcgcttc gtcagggtgt tgtatgcgac ctcccggatg agggcctgga cgaacgcgaa
      901 ctgcccacgt tccggcgagc gcgggtccga acggatcgac aggatctcgc gcttcccgag
      961 cgcggcaagc cgcggctcga tctcggcgcc actccgaccg gagacggcgg cgaggccggc
     1021 gagggtgaag ctctggccca ggaccgcggc atcctggagg agggcccggt cggcgggctc
     1081 gagcgcgtcc aggcgtgccc cgatcagcgc ggtcagggtc tccgggacgg cgagggcggc
     1141 aaggtcgccg acgagggcgt acgcaccgga ctcctcgcgg agcttgccgt cggcgacgag
     1201 catccggacg gtctcgacgg catacagcgg gatgccgtcg gcgcgggcca cgatcgcgtc
     1261 cacggtgggc ttgggcaggc cggggacgag accggcgagg agctcgcgca tcgaggcctc
     1321 ggccagcggc tcgaggccca ggctgaggaa gttccgtcga ccggcgcccc actccgggcg
     1381 ccgttccagg agctccggac gggccagcgt gaggacgtag atcggctggt cgcgagacca
     1441 ctccaggaga tggtcgatga agtccagcag cccggggtcg gcccagtgga ggtcctcgaa
     1501 cacgaggacc acgggacccg ttgtcgcgag ccggctgaag aacgtccgcc aggccgcgaa
     1561 gagctcatcg gcggcgaggt cgccggcgcc gaaccccagg agcgtcagca tcgacgactc
     1621 catccagcgc cgttccgtct cgtccggcac gtgccgcgcc agcatttcgg cgaggcgccg
     1681 ccgcgtcgtc ggct
//
LOCUS       DATDDI010000137         2258 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_23755, whole genome shotgun sequence.
ACCESSION   DATDDI010000137 DATDDI010000000
VERSION     DATDDI010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23755"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..428)
                     /locus_tag="VIU37_01985"
     CDS             complement(<1..428)
                     /locus_tag="VIU37_01985"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY6012739.1"
                     /translation="MTTISVITPTWQRHELLMERCVPSVFTQTWPAVEHVVVSDGPDR
                     VVADLLAKDLWRRPRKTRPLVVDQLSQHIEGPIDYGSRARNRGVQLATGELIAYLDDD
                     NSYRRDHLEVLAAAFEDPAVDFAYSQLLTHPGGQVIGAASP"
     gene            complement(511..1530)
                     /locus_tag="VIU37_01990"
     CDS             complement(511..1530)
                     /locus_tag="VIU37_01990"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6012740.1"
                     /translation="MRVAVVGGGLFGSLAAVELARAGVAVTLYERHGDLLMGATRANQ
                     GRIHRGYHYPRDPAAGGLAEHADRLVARLPGAVVQGNTHHYLIADGSLVDAVRYEQFC
                     RAAGLPWQPSPSSLVLGDPVTVRAPEAFLDVDRARTILRRELLAAGVRVLVGASGRTA
                     ADVDALTWHYDRVVDTTYGRYWPGPLRYEVCETALIELGPRYRGQSFVVMDGPYVSLD
                     PHGPAHMLYDVRHSVHAVSETPEAVPEYLAPLLDRGLVRTDHTHLPDMLATARRFLSL
                     PDRPTYLGSLFTVRAVLPDDGTDARPTLIRTDGAVTRVLAGKLCTAPWAAEQVARQLA
                     PVPVG"
     gene            complement(1527..2051)
                     /locus_tag="VIU37_01995"
     CDS             complement(1527..2051)
                     /locus_tag="VIU37_01995"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6012741.1"
                     /translation="MTIQLVWRDVAIGDGPPINTSLTAGETAELQRLAKDGDVLEVGS
                     AYGYSTCALALAARSVTAVDPHLTHGSEGDLRRNLRAYGVQDKVDVRVGYSQDVLPQL
                     AFYRYDLVWIDGDHTAEVVEHDVRWALKLLKPGGHLACHDYDEVTCPGVRTALDRIFG
                     GPGTLTDTLAVYQP"
     gene            complement(2048..>2258)
                     /locus_tag="VIU37_02000"
     CDS             complement(2048..>2258)
                     /locus_tag="VIU37_02000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012742.1"
                     /translation="GAAGGGPSAGAAATTGHGMDSGYNHATDAAQSTGPAEAQPATHP
                     VSGTAIPSTTGAGQGTVRKGGRGGK"
BASE COUNT          292 a          762 c          895 g          309 t
ORIGIN      
        1 gggctcgccg cgccgatcac ctgaccgccg gggtgggtga gtagctgcga gtaggcgaag
       61 tcgacggccg ggtcctcgaa cgccgcggcg agcacttcga gatggtcacg gcggtaggag
      121 ttgtcgtcgt cgaggtaggc gatgagttcg ccggtggcca gttgcacgcc gcggttgcgg
      181 gcccgggagc cgtagtcgat cgggccctcg atgtgctgtg acaactggtc gacgacgagc
      241 ggccgggtct tgcgcggccg ccgccacagg tccttggcca gcaggtcggc gacgacccgg
      301 tccgggccgt cgctgacgac gacgtgctcg acggccggcc aggtctgcgt gaagaccgag
      361 gggacgcagc gttccatgag gagctcatgc cgctgccacg tcggggtgat caccgagatg
      421 gtggtcacgc caacctcctt cgtggatggc gctggatggt tgacctccgg cccggccgac
      481 catccaaagc agccgggccg gaggagtcgc tcagccgacc ggcaccggcg cgagttgccg
      541 ggcgacctgc tcggcggccc acggcgcggt gcacagcttc ccggccagca cccgggtgac
      601 ggccccgtcg gtgcggatga gggttggtcg ggcgtcggtg ccgtcgtcgg gcagcaccgc
      661 ccggacggtg aacagcgacc cgaggtaggt gggtcggtcg gggaggctca ggaaccgcct
      721 ggccgtggcg agcatgtccg gcaggtgggt gtggtcggtg cggacgagcc ctcggtcgag
      781 caggggcgcg aggtactcag gaaccgcctc gggcgtctca ctgacggcgt ggacggagtg
      841 ccggacgtcg tagagcatgt gcgccggccc gtgtgggtcg agcgagacgt acgggccgtc
      901 catgaccacg aacgactggc cgcggtagcg cggccccagc tcgatgaggg ccgtctcgca
      961 cacctcgtag cgcagcggcc cgggccagta ccggccgtag gtggtgtcga cgacccggtc
     1021 gtagtgccac gtcagagcgt cgacgtcggc agcggtgcgg cctgaagccc cgacgagcac
     1081 ccgcacgccg gcggcgagca gttcccggcg caggatcgtg cgggcccggt cgacgtccag
     1141 gaacgcctcg ggcgcccgga cggtgaccgg gtcgcccagg acgagcgacg acggcgacgg
     1201 ctgccacggc aggccggcgg cgcggcagaa ctgctcgtag cgcacggcgt cgacgagcga
     1261 cccgtcggcg atgaggtagt ggtgggtgtt gccctgcacg accgcgccgg gcagccgggc
     1321 gacgagccgg tcggcgtgct cggccaggcc accggcggcc gggtcccgcg ggtagtggta
     1381 gccgcggtgg atgcggccct ggttcgcccg ggtcgcgccc atgagtaggt cgccgtgccg
     1441 ctcgtacagg gtgacggcga cgccggcccg ggcgagctcg accgcggcga gcgagccgaa
     1501 cagcccgccg ccgacgaccg cgaccctcac ggctggtaca ccgcgagcgt gtcggtgagc
     1561 gtcccgggcc cgccgaagat ccgatcgagg gcggtccgga cgccggggca ggtgacctcg
     1621 tcgtagtcat ggcaggcgag gtgcccgccg ggcttgagca gcttcagcgc ccaccgcacg
     1681 tcgtgctcga cgacctcggc ggtgtggtcg ccgtcgatcc acaccaggtc gtagcggtag
     1741 aacgccagct ggggcaggac gtcctggctg tacccgaccc ggacgtcgac cttgtcctgc
     1801 acgccgtagg cgcgcaggtt gcgccgcagg tcgccctcgg agccgtgggt gaggtgcggg
     1861 tccacggcgg tgacggacct cgccgcgagg gcgagcgcgc aggtggagta cccgtaggcg
     1921 gagcccacct ctaggacgtc gccgtccttc gcgagacgct gcagttcggc ggtctcgccg
     1981 gcggtcagcg acgtgttgat cggcgggccg tcaccgatcg ccacgtcgcg ccagacgagc
     2041 tggatcgtca cttgccgccc cgcccgccct tgcggacggt gccctggccg gcgccggtcg
     2101 tgctcgggat ggcggtcccg ctgaccgggt gcgtggccgg ctgcgcctcg gccggtccgg
     2161 tcgactgggc cgcgtcggtg gcgtggttgt agccgctgtc catgccgtgc ccggtggtgg
     2221 ccgcggcgcc ggccgacgga ccgccgccgg cggcgcct
//
LOCUS       DATDDI010000138         1690 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_335943, whole genome shotgun sequence.
ACCESSION   DATDDI010000138 DATDDI010000000
VERSION     DATDDI010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335943"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VIU37_02005"
     CDS             <1..414
                     /locus_tag="VIU37_02005"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6012743.1"
                     /translation="TIIAMIVLAIPPILVNTYAGIAEVDRDLVESARGMGMTERQVLR
                     QVEVPIALPVIVGGLRSATVQVIATATLGAIYGLGALGGYIVEGVAQRDDGRLFAGVA
                     LVAMLALLAEGGLALVQRRLGVPAEARAARAAPAS"
     gene            520..1455
                     /locus_tag="VIU37_02010"
     CDS             520..1455
                     /locus_tag="VIU37_02010"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6012744.1"
                     /translation="MTRWVALGASLLVLLSACTTGGGNKPTIKVGSDGFYEAKLMAEI
                     YAQALEANGYTVDRTAIGIGARKVSAPALETGQFDLKPEYIGSGLAYYEPGKQTGDPA
                     KNMTELQSVLSGKGGGITVLQYSPAADQNAFVVRKETADQFHLSKMSDLTAVASQLKF
                     GVATDCPTNPVCGKALKDSYGIDVSNATLLSACDAPMAQALLGKTIDVGELCSTQPDI
                     AVNGWVVLQDDKQTQPADNLAPLVRNDLLTKLGSNADAVRQILNDVSAAMDTATLTDL
                     GKQVSIDKQDIAAVAKAWLQSKGLISGGSAAPASS"
BASE COUNT          272 a          608 c          583 g          227 t
ORIGIN      
        1 acgatcatcg cgatgatcgt gctcgcgatc ccgccgatcc tcgtcaacac ctatgccggg
       61 atcgccgagg tcgaccgcga cctcgtcgag agcgcgcgcg gcatgggcat gaccgagcgc
      121 caggtccttc gccaggtgga ggtgccgatc gccctgccgg tcatcgtcgg cgggctgcga
      181 tcggcgacgg tccaggtcat cgccaccgcg acgctcggtg cgatctacgg cctgggggcc
      241 ctgggcgggt acatcgtcga gggcgtcgcc cagcgcgacg acggccgcct cttcgcgggg
      301 gtcgccctcg tcgccatgct cgcgctcctg gccgagggcg gcctcgcgct cgtccagcgg
      361 cggctcgggg tgccggccga ggcgcgcgcc gcgcgggccg ccccggcatc gtgaggccgt
      421 aaccgctctg aaccacgaat cgggttgcgc cggtatagtc cccggacccg acgcctggcc
      481 agatggccgg cgcagagcaa ggagaaggac ccaatgcgga tgacccgctg ggttgccctc
      541 ggggcgtcgc tgctggtgct gctcagcgcc tgcacgacgg gtgggggcaa caagccgacg
      601 atcaaggtcg gctcggacgg cttctacgaa gccaagctca tggccgagat ctacgcccag
      661 gcgctcgaag ccaatggcta cacggtcgat cgcaccgcga tcggcatcgg agcgcgcaag
      721 gtctcggcac ccgccctcga gacggggcag ttcgacctca agcccgagta catcgggagc
      781 ggcctggcgt actacgagcc cggcaagcag accggcgacc cggccaagaa catgaccgag
      841 ctccagagcg tgctgtccgg caagggcggc gggatcacgg tcctgcagta ctcgccggcg
      901 gcggaccaga acgccttcgt cgttcgcaag gagacggccg accagttcca cctctcgaag
      961 atgagtgacc tcaccgcggt ggcgagccag ctcaagttcg gcgtggcgac ggactgcccg
     1021 acgaacccgg tctgcggcaa ggcgctgaag gactcctacg gcatcgacgt gtcgaacgcg
     1081 acgctcctgt cggcgtgcga cgccccgatg gcgcaggccc tgctcggcaa gacgatcgac
     1141 gtcggtgagc tgtgctcgac gcagcccgac atcgccgtca acggctgggt ggtcctccag
     1201 gacgacaagc agacgcagcc ggccgacaac ctcgcgccgc tcgtccggaa cgatctcctg
     1261 acgaagctcg gcagcaacgc cgacgccgtc aggcagatcc tgaacgacgt ctccgcggcg
     1321 atggacacgg ccacgctgac cgacctcggg aagcaggtct ccatcgacaa gcaggacatc
     1381 gctgccgtgg ccaaggcctg gctccagtcg aagggcctga tctcgggcgg gagcgccgca
     1441 ccggcctcct cctagccctg gcgcccacct gcgtcgcagc ctcgagcccc cagccgccgg
     1501 ccgggggctc gacgattcac ccggtgccct cagccgagcg cgatcgaggc gagcagctcc
     1561 cggccccgga cgaccatctc cggacgggtc gcgcggaggc gctgctcctc gtgatcgatc
     1621 cacgactcga gcgtgctgcg agtcccggtt gccgcggcga tccggtcgag ccgcgcgtcg
     1681 gcccaggcga
//
LOCUS       DATDDI010000139         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_127885, whole genome shotgun sequence.
ACCESSION   DATDDI010000139 DATDDI010000000
VERSION     DATDDI010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127885"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1145)
                     /locus_tag="VIU37_02015"
     CDS             complement(<1..1145)
                     /locus_tag="VIU37_02015"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6012745.1"
                     /translation="MSAIASRLSLRGRLPALRMTSGITAIMVKELRGRMRGRRAFVII
                     TVHVLLLAAFAWMLDRISEESIAGMGSYGGQATYASASVGRAVFVGLLMLQTLMVAVL
                     APAATAGAISSEREHQTLELLPVTPISSLAIVLGKLLSALAWVFVLVLASIPVTALVF
                     VFGGVAPDDVIRGYLVLFATVIGLGSIGIFFSALTRRTGASTGLTFVATLGLTIGTFF
                     VFVFMSSTAPIDATGLRRQPPEAILYLNPFVAQADVACGTEDGAFGGTCSFMSGILGV
                     NQQFGPGVDPGVPVPAMKGGVVVGGVGVTAPNGGFVGPDGAARGNLVLDANGNVISAD
                     VINNAVDSFRDRFWPKTVISLLVLAAVMTIASIQFVSPTRRWRPSLPG"
     gene            complement(1162..>1705)
                     /locus_tag="VIU37_02020"
     CDS             complement(1162..>1705)
                     /locus_tag="VIU37_02020"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6012746.1"
                     /translation="RLCLAHALVHDPKVLLLDEPASGLDPRARVELRELLRELRTLGK
                     SIVISSHILPELEELCTSVAIVDRGRVLASGTIADIGQKLRIGEVLRVRVLADEEGVE
                     SARAWFESRSDVASAATDDSGLIEIGFRGNEAGAAALLAAAVRADIAIASYSPAATDL
                     QELFLQVTDREDALSGGTAA"
BASE COUNT          282 a          572 c          632 g          219 t
ORIGIN      
        1 cccggcaggc tgggacgcca gcggcgcgtt gggctgacga actggatcga tgcgatggtc
       61 atgaccgcgg cgagcacgag caggctgatg acggtcttgg gccagaagcg atcgcggaac
      121 gagtccaccg cgttgttgat gacatcggcg ctgatgacgt tgccgttcgc gtcgaggacg
      181 aggtttcccc gcgcggcgcc gtcgggtccg acgaagcccc cgttcggggc cgtgacgccg
      241 acgccgccga cgacgacgcc gcccttcatg gccggaaccg gcacgccggg atcgacgccg
      301 gggccgaact gctggttcac cccgaggatg ccggacatga agctgcacgt gccgccgaac
      361 gcgccgtcct ccgtgccgca ggcgacgtcg gcctgggcga cgaacgggtt caggtacagg
      421 atcgcctcgg gtggctgcct gcggagcccg gtcgcgtcga tcggcgcggt gctgctcatg
      481 aagacgaaca cgaagaaggt gccgatcgtg aggccgagcg tcgccacgaa cgtcaggcca
      541 gtcgaggcgc ccgtccggcg cgtgagcgca gagaagaaga tgccgatcga gccgagcccg
      601 atgacggtcg caaagaggac gaggtagccg cggatgacgt cgtccggtgc gacgccgccg
      661 aacacgaaga cgagcgcggt gaccgggatc gaggccagga cgaggacgaa cacccaggcc
      721 agcgcactca ggagcttgcc gagcacgatc gcgagggacg agatcggcgt gacgggcagg
      781 agctcgaggg tctggtgctc ccgctcgctg ctgatcgccc cggccgtcgc ggcgggggcg
      841 aggaccgcga ccatcagcgt ctggagcatc agcagcccga caaagactgc ccgaccgacc
      901 gatgccgagg cgtacgtggc ctggccgccg taggagccca tgccggcgat gctctcctcg
      961 ctgatgcggt cgagcatcca ggcaaacgcc gccaggagca ggacgtggac ggtgatgatc
     1021 acgaacgcgc gccggccgcg catgcggccg cggagctcct tgaccatgat cgcggtgatg
     1081 cccgaggtca tgcggagcgc gggcagccgg ccgcgcagcg agagccggct cgcgatggcg
     1141 ctcatgccgc ggtcccgccg ctcatgccgc ggtcccgccg ctcagcgcgt cctcgcgatc
     1201 ggtgacctgg aggaacagct cctggaggtc cgtggccgcc ggcgagtagc tcgcgatggc
     1261 gatgtccgcg cggacggccg cggcgagcag tgccgccgcc ccagcctcgt tgccgcggaa
     1321 gccgatctcg atgagcccgg agtcgtccgt ggcggccgac gcgacgtccg agcgagactc
     1381 gaaccaggcc cgcgcgctct cgacgccctc ctcgtcggcg aggacgcgga cgcggagcac
     1441 ctcgccgatc ctgagcttct ggccgatgtc cgcgatcgtc cccgaggcga gcacgcgtcc
     1501 acggtccacg atcgcgaccg acgtgcacag ctcttcgagc tcgggaagga tgtggctgct
     1561 gatcacgatg gacttgccga gcgttctcag ctcgcggagg agctcgcgca gctcgacccg
     1621 ggcgcgggga tcgaggccgg aggcaggctc gtcgagcagg agcaccttgg gatcatggac
     1681 cagcgcgtgc gcgaggcaca gtcgc
//
LOCUS       DATDDI010000140         1659 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_710473, whole genome shotgun sequence.
ACCESSION   DATDDI010000140 DATDDI010000000
VERSION     DATDDI010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710473"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1130)
                     /gene="hydA"
                     /locus_tag="VIU37_02025"
     CDS             complement(<1..1130)
                     /gene="hydA"
                     /locus_tag="VIU37_02025"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HEY6012747.1"
                     /translation="MRTLISNGTVVTADGSYPADVLIDGERIAALGAGLVASTAADET
                     IDATGKYVIPGGIDVHTHMKLPFGGTFAKDDFFTGTRAAAFGGTTSIVDFAVQSKGKT
                     LREGLDAWHALAEGNAVTDYGFHMIMSDVNDDSLAEMDGLVAEGVPDFKLFTAYPGVF
                     FSDDGAIFRAMQRTAKNGGLIMMHAENGLAIDVIAADTVAAGTTDPIGHGLARYSVLE
                     GEATNRVIRLAEAAKVPVYIVHLSAREALNAVRMARDEGLPAFAETCPQYLFLSLDDL
                     GHGFEGAKFVCSPPLRDATAGHQEELWKGLVKDDLQVVSTDHCPFDFHGQKDLGRSDF
                     RKVPNGLPGVEDRMDLLHDGGVVGGRLTKERWVEITSTAPARL"
     gene            complement(1186..1395)
                     /locus_tag="VIU37_02030"
     CDS             complement(1186..1395)
                     /locus_tag="VIU37_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012748.1"
                     /translation="MPSILALRRRDPWWGQEGPAARRKHRYEQFVSTTAFVASLFALG
                     GAAWVWAVHLGFAAMLGVRMTLAIG"
BASE COUNT          248 a          555 c          596 g          260 t
ORIGIN      
        1 agccgtgccg gggccgtcga cgtgatctcc acccagcgct ccttggtcag ccgcccgccc
       61 acgacgccgc cgtcgtgcag gaggtccatc cggtcctcca cgccgggcag tccgttcggg
      121 accttccgga agtcgctgcg gccgaggtcc ttctggccgt ggaagtcgaa cgggcagtgg
      181 tcggtggaga cgacctgcag gtcatccttg acgaggccct tccagagctc ctcctggtgc
      241 ccggccgtcg cgtcgcgcag cggcggcgag cacacgaact tcgcgccctc gaagccgtga
      301 ccgaggtcgt cgagcgacag gaacaggtac tgcggacagg tctcggcaaa ggccggcagc
      361 ccctcgtcgc gggccatccg gaccgcgttc agcgcctcgc gggccgagag gtggacgatg
      421 tacacgggga ccttcgccgc ctccgccagg cggatgaccc ggttcgtcgc ctcgccctcg
      481 aggaccgagt agcgcgccag gccatggccg atcgggtcgg tcgtgccggc agcgaccgtg
      541 tcagccgcga tgacgtcgat cgccaggccg ttctcggcgt gcatcatgat cagcccgccg
      601 ttcttcgcgg tgcgctgcat cgcccggaag atcgcgccgt catcgctgaa gaagacgccc
      661 gggtaggcgg tgaacagctt gaagtcaggg acgccctcgg cgaccagccc gtccatctcg
      721 gcgagcgagt cgtcgttgac gtcgctcatg atcatgtgga agccgtagtc ggtgacggcg
      781 ttgccctcgg ccagggcgtg ccacgcgtcg aggccctcgc gcagcgtctt gcccttcgac
      841 tgcaccgcga agtccacgat cgaggtggtg ccgccgaacg cggcggcgcg cgtgccggtg
      901 aagaagtcgt ccttcgcgaa cgtgccgccg aacggcagct tcatgtgcgt gtggacgtcg
      961 atgccgccgg ggatgacgta cttgcccgtc gcgtcgatgg tctcgtcggc ggccgtcgag
     1021 gcgacaaggc cggcgcccag tgccgcgatg cgctcgccgt cgatcaggac atcggccggg
     1081 taggagccgt cggcggtgac gaccgtgccg ttcgagataa gggtgcgcat cgctcctcct
     1141 tcgatgagga ggagatcgta tgccagcggc gccgggccgc gggcgtcagc cgatggcgag
     1201 cgtcatccga acgccgagca tggcggcgaa cccgagatgc acggcccaca cccaggcggc
     1261 gccgccgagg gcgaagagcg aggcaacgaa cgcagtcgtg gagacgaact gctcgtagcg
     1321 gtgctttcgt cgcgcggcgg gaccctcctg gccccaccag gggtcccggc gacgcaaggc
     1381 caggatgctg ggcatgacgc gctcctctgc agcagaccgg ggaacgggcg aagggatcgc
     1441 cagtgtcggt ccggggcagc ccggaaggaa gatgaccttc gggtccgagg gccggggaga
     1501 aatgtcccag cggccccgaa accggtgcgc gtcggcgccg gccggcgagc ctacttggcg
     1561 gtcttggcct tgttctgctt cggcttcttg ggggtcttgg ccttcttgtc cacgtcaacc
     1621 tccgactggt tgggggtgcc tgcaggcaaa tcctagcgt
//
LOCUS       DATDDI010000141         1556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_544106, whole genome shotgun sequence.
ACCESSION   DATDDI010000141 DATDDI010000000
VERSION     DATDDI010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544106"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..951
                     /locus_tag="VIU37_02035"
     CDS             <1..951
                     /locus_tag="VIU37_02035"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6012749.1"
                     /translation="LNPATRARVRPATVERVLAAAQTVGYRPNSIARGLRTNKTYTIG
                     MLIPDLTNPLFPPIVKGIEDRLSQDGYTLLLANTDGDLDREASILGSMASRRVDGLLL
                     ATARREYPVVHELLAEGMKVVLVNRTMEDAPVPSVTGDEYEGIGLAVKHLVGLGHRRI
                     AYVGGDPDASTGLIRYQAFTSWLHGAGLELDSDLIAVADRFREEPGASAFAALLDRGS
                     DFTAVVAGNDLLALGCYDVLRERSLEIPRSISVVGYNDILFADKFAPPLTTVRIPHYQ
                     IGVRAAQLLLESIESSETTAMALRLAPSLVVRESTAPPRA"
     gene            997..>1556
                     /locus_tag="VIU37_02040"
     CDS             997..>1556
                     /locus_tag="VIU37_02040"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012750.1"
                     /translation="MQADAVTAGEAVDAAPTWAAGRAVAVVGAAMLAISAIAFFRVPL
                     LPAIGRDLVLRPGVLSLVTVVFGIGRLLADLPAGRIAERYPAMHALAGAAVLLGAGSA
                     LLAEAQSLRPLLAAAAVLGVGSAFANTTGMTFFSRAPAARRGTSMAVFSAALLGGQSL
                     GPAVSGPLMAVAGWRGAELLAAAVGGT"
BASE COUNT          200 a          535 c          561 g          260 t
ORIGIN      
        1 ctgaatcccg cgacacgggc ccgtgtgcgg ccggcgaccg tggagcgtgt gctggctgcg
       61 gcgcagacgg tcggctaccg gccgaactcg atcgcccggg gactgcgcac gaacaagacg
      121 tacacgatcg ggatgctgat ccccgacctg acgaatccgc tcttccctcc gatcgtgaag
      181 gggatcgagg atcggctcag ccaagacggc tacacgctgc ttctcgccaa caccgacggc
      241 gacctcgacc gggaggcgtc gatcctcggt tcgatggcgt cgcggcgcgt ggacggtctc
      301 ctgctcgcaa cggcacggcg cgagtacccg gtcgtgcacg agctgctcgc cgaggggatg
      361 aaggtcgtac tggtgaacag gacgatggag gacgcgccgg tcccgtcggt gacaggggac
      421 gagtacgagg gcatcggcct cgccgtgaag catctggtcg gcctcgggca ccgccggatt
      481 gcctacgtcg gcggcgatcc tgacgcatcg acggggctga tccgctatca ggcgttcacg
      541 tcgtggctcc acggcgccgg gttggagctc gattccgacc tgatcgcggt ggcagaccgg
      601 ttccgggagg agccgggtgc gagcgcattc gcggccctcc tcgatcgcgg cagcgacttc
      661 acagccgtcg tggcgggtaa cgacctgctc gcgctcggct gctacgacgt actgcgggag
      721 cggtcgctgg agatcccgag gtcgatctcg gtggtcggtt acaacgacat cctctttgcc
      781 gacaagttcg cgccgccttt gaccacggtg cggatcccgc actaccagat cggcgtgcga
      841 gcagctcagc tcctgctcga gtcgatcgag tcgtcggaga cgacggccat ggcactgcgc
      901 ctcgcgccgt cgctggtcgt gcgtgagtcg accgcgccgc cacgtgccta gccccggttg
      961 accgccggcc gccggggccg ttagcatcgc aaacgtttgc aggcagacgc cgtcaccgcg
     1021 ggcgaggccg tcgacgcggc ccctacgtgg gcggccggcc gcgccgtcgc ggttgtcggt
     1081 gcggcgatgc tcgcgatctc cgcgatcgcc ttcttccgtg taccgctcct gccggcgatc
     1141 ggccgtgacc tggtattgcg gccgggcgtg ctcagcctcg tgacggtcgt attcggtatc
     1201 ggccgtctgc tcgccgacct gccggccggc cggatcgccg agcggtaccc ggcgatgcac
     1261 gcgttggccg gggctgcagt cctgctcggg gccgggagcg ccctgctggc ggaggcgcaa
     1321 tcgctccgac cgctgctcgc cgccgcggcc gtgctcggcg tcggctccgc gttcgccaac
     1381 acgacgggaa tgacgttctt ctcgcgggct ccggccgcgc gtcgaggcac gagcatggcg
     1441 gtcttctccg ctgcccttct cggcgggcag tcgctcgggc ccgccgtttc cgggccgctg
     1501 atggccgtag ccggctggcg gggggcggag ttgctcgcag ccgctgtcgg cgggac
//
LOCUS       DATDDI010000142         1514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_44434, whole genome shotgun sequence.
ACCESSION   DATDDI010000142 DATDDI010000000
VERSION     DATDDI010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44434"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..766)
                     /locus_tag="VIU37_02045"
     CDS             complement(<1..766)
                     /locus_tag="VIU37_02045"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6012751.1"
                     /translation="MSALPDRARVVVIGAGIVGNSMAYHLALAGWRDIVLLEKGTLPN
                     PGGSTGHASNFIFLTDHSKEMTAFTVESARQYRELGVYHECGGIEVARTPERMEELKR
                     RMASSTSWGIEGTRLLTPAEVKAMVPFIDETVILGGFYTPGVGVVDSLQAGTLMRQKA
                     VDMGALTIAAGVEVSGIDTENGRVRRVRTNKGEIEADVVVIAAGIWSPRLARMAGASI
                     PLTPAVHQMIDIGPVPIFEHARSEVDYPIVRDMDTNM"
     gene            947..>1514
                     /locus_tag="VIU37_02050"
     CDS             947..>1514
                     /locus_tag="VIU37_02050"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6012752.1"
                     /translation="MPSLFINGEWVASASGESSPVVNPSDGSVVAEVDVATDGQVQAA
                     IAAARQAFDRTDWPRSAASDRAALLDAVAGLIDRDLEEMAQLETINTGKQMRESRWDM
                     GDVARVFRYYADLADKEAGRLVDAGNPDVLSRVVREPIGVCGLIAPWNYPLLQLSWKI
                     APALAAGNTAVLKPAQLTPLSAIHLVGLF"
BASE COUNT          216 a          533 c          532 g          233 t
ORIGIN      
        1 acatgttggt gtccatgtcg cgcacgatcg ggtagtccac ctcgctccgg gcgtgctcga
       61 agatcgggac cggaccgatg tcgatcatct ggtggacggc cggcgtcaac gggatggacg
      121 caccggccat cctcgccagc cgtgggctcc agatccccgc cgcgatcacg accacgtcgg
      181 cttcgatctc gcccttgttg gtccggaccc gccggacccg gccgttctcg gtgtcgatcc
      241 cgctcacctc gacgccggcg gcgatcgtca gggcgcccat gtcgacggcc ttctggcgca
      301 tgagcgtgcc cgcctggagc gagtcgacga cgccgacgcc cggggtgtag aagccgccca
      361 ggatgacggt ctcgtcgatg aacgggacca tggccttgac ctcggccggg gtcagcaggc
      421 gggttccctc gatcccccac gaggtcgacg acgccatccg tcgcttgagc tcctccatcc
      481 gctcgggcgt ccgggcgacc tcgatgccgc cgcactcgtg gtacaccccc agctctcggt
      541 actgccgcgc gctctcgacc gtgaaggccg tcatctcctt cgagtggtcg gtcaggaaga
      601 tgaagttgga ggcatgtccg gtcgagccgc ccgggttggg gagggtgccc ttctcgagca
      661 gcacgatgtc gcgccagccg gccagcgcga ggtggtaggc catgctgttg ccgacgatgc
      721 cggcgccgat cacgacgacg cgggcccgat ccggaagcgc gctcatgcgg gtgggatcct
      781 cctcattcgt gcgccagcgg gggcgtgggg cgaaatccta gcgcgcggcc gtcccgtccg
      841 ggtcgatgga ccgcggccgg gaacggcggc ttgacgctcg ccgcgacgcc aacccatcct
      901 ctcggccacc gcgtcaaggt cctgcgtcga accgtgcgag ggagccgtgc ccagcctctt
      961 catcaacggc gagtgggtcg cgtcggccag cggcgagtcc agcccggtcg tgaacccgtc
     1021 ggacggttcc gtggtggcgg aggtggacgt cgcgaccgat ggccaggtcc aggcggcgat
     1081 cgccgccgcc cgccaggcgt tcgatcggac cgactggccg cgctccgcgg catcggaccg
     1141 cgcggcgctg ctggacgcgg tcgccgggct gatcgatcgg gacctcgaag agatggccca
     1201 gctcgagacg atcaacaccg gcaaacagat gcgcgaaagc cgctgggaca tgggcgacgt
     1261 cgcgcgggtg ttccgctact acgccgatct cgccgacaag gaagcgggcc ggctcgtcga
     1321 cgccggcaac ccggacgtgc tcagccgggt cgtccgggag ccgatcggcg tctgcgggct
     1381 catcgcgccg tggaactacc cgctcctcca gctaagttgg aagatcgcgc ccgcgctggc
     1441 ggcgggcaac acggcggtgc tgaagccggc ccagctgacg ccgctgtcgg cgatccacct
     1501 cgtcggcctg ttcg
//
LOCUS       DATDDI010000143         2826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_148580, whole genome shotgun sequence.
ACCESSION   DATDDI010000143 DATDDI010000000
VERSION     DATDDI010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148580"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1745
                     /locus_tag="VIU37_02055"
     CDS             <1..1745
                     /locus_tag="VIU37_02055"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6012753.1"
                     /translation="VVPDDAPEFVQKVTAALMAGFGDRLPVSAFPVDGTFPSGTTKYE
                     KRAIAQEIPVWDPSICIDCGKCAIVCPHAAIRMKVFPSEAVANAPADFLHKEFKSRDL
                     VGHRLTIQVAPDDCTGCGVCVDVCPAKSKTDVSHKAINMEPILEHRDVERERWDYFQT
                     IPQLDRNLIAHDTIKGAAQLEPLFEFSGACGGCGETPYIRLVSQLFGDRMIVANATGC
                     SSIYGANLPTTPWTVNAAGRGPAWNNSLFEDNAEFGLGMRLALDAQTDHARMLLERLA
                     PELGADLVHDLLNAGQETEPEIDLQRARVAALRDALTRIDGPRAADARQLLALAGDLV
                     RKGIWIIGGDGWAYDIGFGGVDQVLSSGRNVNILVLDTEVYSNTGGQASKSTPRGAVA
                     KFSAAGKGTAKKDLGAIARSYGNVYVAQISMGANDLQTTKALLEAEAWPGPSLIIAYA
                     TCIAHGIDMSKSMSHQKDAVKSGYWPLYRYRPSETEGGTPFKLDSTAPSIPIRDFVAT
                     ETRFAVLARTHPERAAELAELAQADADERWHYYEQLAGVERTVPHLHQPDPDIVPEVE
                     SDAGYRYEGEGKAE"
     gene            1742..2767
                     /locus_tag="VIU37_02060"
     CDS             1742..2767
                     /locus_tag="VIU37_02060"
                     /inference="COORDINATES: protein motif:HMM:NF005741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase-like protein"
                     /protein_id="HEY6012754.1"
                     /translation="MTVDLTTRYLGLTLRSPIVASAAPHNNQPDTAGRLERAGVGAIV
                     LPSLFEEEILAEEIGLNRSLEQGTESFVEAIDYFPAVDTYQSVADRYLLSLERVKAKV
                     GVPVVASLNATTSGGWVHYATRMQDAGADALELNLYHVAADPSRSAIDVESADLALIA
                     AVRAAVTIPLAVKLSPYYSSFASFATAAIGAGADGLVLFNRFYQPDLDLETLDVVPAL
                     ELSHAWELRLPVRWIALLRPRLGDGVSLAATSGVHTGTDAVKALMVGADVVMMTSALL
                     RHGPEHAATVETGLRDWLAEHDYASVDQLRGSASAATVGDPGAFERANYMATIRSWTT
                     PRELTAS"
BASE COUNT          445 a         1053 c          935 g          393 t
ORIGIN      
        1 cggtcgtgcc cgacgacgcg ccggagttcg tccagaaggt caccgcggcg ctcatggccg
       61 gcttcggcga tcggctcccg gtcagcgcct tccccgtcga tgggacgttc ccgtccggga
      121 cgacgaagta cgagaagcgc gcgatcgccc aggagatccc tgtctgggat ccgtcgatct
      181 gtatcgactg cggcaagtgc gcgatcgtct gcccgcacgc ggcgatccgg atgaaggtct
      241 tcccgtccga ggccgtcgcc aacgccccgg cggacttcct gcacaaggag ttcaagtcgc
      301 gcgacctcgt cggtcaccgc ctgaccatcc aggtcgcccc ggacgactgc accggctgcg
      361 gcgtgtgcgt cgacgtctgc ccggccaaga gcaagacgga cgtcagccac aaggcgatca
      421 acatggagcc gatcctggag caccgcgacg tcgagcgcga gcgctgggac tacttccaga
      481 cgatccccca gctcgaccgg aacctgatcg cgcacgacac gatcaagggc gccgcccagc
      541 tggagccgct gttcgagttc tcgggtgcct gcggcggctg cggcgagacg ccgtacatcc
      601 gcctcgtcag ccagctgttc ggtgaccgga tgatcgtggc caacgccacg ggctgctcct
      661 cgatctacgg cgccaacctg ccgaccacgc cgtggacggt caacgcggcc ggccgtggcc
      721 cggcctggaa caactcgctg ttcgaggaca acgccgagtt cgggctcggg atgcgcctgg
      781 cgctcgatgc ccagaccgac cacgcccgga tgctcctcga gcgcctggct ccggagctcg
      841 gcgccgacct cgtccacgac ctgctcaacg ccggccagga gaccgaaccc gagatcgacc
      901 tccagcgagc cagggtcgcc gcgctgcggg acgccctgac ccggatcgac gggcctcggg
      961 cggccgacgc ccggcagctg ctcgcgctcg ctggcgacct cgtgcgcaag gggatctgga
     1021 tcatcggcgg cgacggctgg gcctacgaca tcggcttcgg cggcgtcgac caggtcctga
     1081 gctcgggccg caacgtcaac atcctcgtcc tcgacaccga ggtctactcg aacaccggcg
     1141 gccaggcctc gaagtccacg ccgcgtggcg cggtggccaa gttctccgcg gccggcaagg
     1201 gcacggccaa gaaggacctg ggtgcgatcg cgcggtccta tggcaacgtg tacgtcgccc
     1261 agatctcgat gggcgccaac gacctccaga ccaccaaggc cctgctcgag gcggaggcgt
     1321 ggcccgggcc ctcgctgatc atcgcctacg cgacctgcat cgcccacggc atcgacatga
     1381 gcaagtcgat gagccaccag aaggacgcgg tcaagagcgg ctactggccg ctgtaccgct
     1441 atcgcccatc agagaccgag ggcggcaccc cgttcaagct cgactcgacc gcgccgtcga
     1501 tcccgatccg ggacttcgtc gccaccgaga cccgcttcgc ggtcctcgcc cggacgcatc
     1561 ccgaacgagc cgcagagctc gccgagctgg cccaggccga cgcggacgag cgctggcact
     1621 actacgagca gctggccggc gtcgagcgga cggtcccgca tctccaccag cccgacccgg
     1681 acatcgtgcc cgaggtcgag agcgacgcgg gctaccgcta tgaaggcgag ggcaaggcgg
     1741 aatgaccgtc gatctgacca cccgatatct cgggctcacc cttcgctcgc cgatcgtcgc
     1801 gtcggcggcg ccgcacaaca accagccgga caccgccggc cggctcgagc gcgccggcgt
     1861 cggcgcgatc gtgctgccgt cgctgttcga ggaggagatc ctggccgagg agatcggcct
     1921 caatcggtca ctcgaacagg gcaccgaatc gttcgtcgag gcgatcgact acttccccgc
     1981 ggtcgacacc taccagagcg tcgccgatcg gtacctgctg tccctcgaac gggtcaaggc
     2041 caaggtgggc gtccccgtgg tcgccagcct gaacgccacg acctcgggcg gctgggtcca
     2101 ctacgccacc cggatgcagg acgctggtgc cgatgccctc gagctcaacc tctaccacgt
     2161 ggcggccgac ccgagccggt ccgccatcga cgtggagtcg gccgacctgg cactcatcgc
     2221 ggccgtccgt gccgcggtga ccatcccgct cgcggtcaag ctgagcccgt actactcgtc
     2281 gttcgcgagc ttcgcgacgg ccgcgatcgg tgcgggcgcc gacggcctgg tcctgttcaa
     2341 ccggttctac cagcccgacc tcgacctcga gacgctcgac gtggtccccg cgctcgagct
     2401 gagccacgcc tgggagctcc gcctcccggt ccgctggatc gcactgctcc ggccccgcct
     2461 cggtgacggc gtgtcactgg ccgccacctc gggggtgcac accgggacgg acgcggtcaa
     2521 ggcgctgatg gtcggggccg acgtggtgat gatgacctcg gccctgctcc ggcacgggcc
     2581 cgagcacgcc gccaccgtcg agacggggct gcgggactgg ctggccgagc acgactacgc
     2641 ctcggtcgac cagcttcgcg gcagcgccag cgcggcgacc gtcggcgatc cgggagcgtt
     2701 cgagcgggcc aactacatgg ccacgatccg gtcctggacg acgccgcgcg agctcaccgc
     2761 gtcctgatcc ggccgccgct caggccaccg gccgagccac ccgccgcgcg ggatcggtcc
     2821 ggccga
//
LOCUS       DATDDI010000144         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_356552, whole genome shotgun sequence.
ACCESSION   DATDDI010000144 DATDDI010000000
VERSION     DATDDI010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356552"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VIU37_02065"
     CDS             complement(<1..605)
                     /locus_tag="VIU37_02065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012755.1"
                     /translation="MRLLVATLRKLIRRPATFITFGLLVGLMALIFLAVGATAKQQPS
                     ATAREAALLLVTFPGAYTFIVSFILGLGGLFAVIYGAAIAGSEWGWGTLKAAVARGES
                     RSRYQLWSLAGVAVMIGIGLLGAFAVGVVVALVGAGLAGVSTAGLNDAATLGQLPELL
                     GRGWFAMIEQGVLGFTIATVARSQLAGVGVGIAVYFGEQFAT"
     gene            complement(602..1630)
                     /locus_tag="VIU37_02070"
     CDS             complement(602..1630)
                     /locus_tag="VIU37_02070"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6012756.1"
                     /translation="MTASTDAFAVATHGPRKAYGHTIALDGLDLAVPRGVIYGFLGPN
                     GAGKTTTIRCLLGLIHPDAGTIELLGRPFGRRDRHRLFEVGALIETPSFYPYLSGREN
                     LRSLAATGAHTSDRRVEELLELVGLRDRAKDKVQGYSLGMKQRLGIAAALLSDPRLLL
                     LDEPANGLDPAGIVAMRETLRHLAATGKTVFISSHVLGEVQQLADVVGIIAAGRLVRE
                     GPIEELLQGEGVVRVRVAPTEVEAATRILAGLAGDGGVTPVAGEPGWLAIRFEPGRAA
                     DVNRALALAGVYVSGLETGSDLESLFLALTAGAPSGGGEGTFFGLGGRRPEPPSGPTG
                     WLGGGGAT"
BASE COUNT          248 a          654 c          603 g          200 t
ORIGIN      
        1 gtggcgaact gctcgccgaa gtagacggcg atcccgaccc cgacgcccgc cagctggctg
       61 cgcgcgaccg tcgcgatcgt gaacccgagc acgccctgct cgatcatcgc gaaccagccc
      121 cggccgagca gctcggggag ctggccgagc gtcgcggcat cgttcagtcc cgccgtggag
      181 acgccggcga gaccggctcc cacgagcgcg accacgacgc cgaccgcgaa cgcgccgagc
      241 agcccgatgc cgatcatcac cgccacgccg gccagcgacc agagctggta gcggctccgg
      301 ctctcgccac gcgcgacggc cgccttgagc gtgccccagc cccactccga gccggcaatc
      361 gccgccccgt agatcacggc gaacaggccg cccaggccga ggatgaacga cacgatgaac
      421 gtgtaggcgc cggggaaggt caccagcagc agggcggcct cccgcgcggt tgcgctcggt
      481 tgctgcttgg cggtggcccc gacggccagg aagatgagcg ccatcagccc caccagcagc
      541 ccgaacgtga tgaacgtcgc cgggcggcgg atcagcttgc ggagcgtcgc gaccagcagt
      601 ctcacgtcgc gccgcctccg ccgagccagc cggtcggccc gctcggtggc tccggacgcc
      661 tgccgcccag gccgaagaac gtgccctcgc cgccgcccga cggcgcaccg gccgtgaggg
      721 ccaggaagag cgattcgagg tcgctcccgg tctcgagacc ggacacgtag acgccggcca
      781 gcgccagcgc gcggttcacg tcggccgccc ggccgggctc gaaccggatc gccagccagc
      841 cgggttcacc cgccaccggc gtcacgccgc cgtcgcccgc cagcccggcg agaatccgtg
      901 tcgccgcctc cacctccgtc ggggcgaccc gaacgcggac cacgccctct ccttggagga
      961 gctcctcgat cggcccctcg cggacgaggc gcccggcggc gatgatgccg accacgtcgg
     1021 ccagctgctg gacctcgccc aggacgtggc tcgagatgaa gaccgtcttc ccggtcgccg
     1081 cgaggtgtcg gagcgtctcg cgcatggcca cgatgcccgc cggatcgagc ccgttcgccg
     1141 gctcgtccag gaggagcagc cgtgggtcgc tgagcagcgc cgcggcgatg ccgaggcgct
     1201 gcttcatccc gagcgaatag ccctggacct tgtccttcgc gcggtcgcgc aggccgacga
     1261 gctcgagcag ctcctcgacc cggcggtccg aggtgtgggc acccgtggcg gccagcgagc
     1321 gcaggttctc gcggcccgac aggtacggat agaaggacgg cgtctcgatc aacgcgccga
     1381 cctcgaacag ccggtgccgg tcgcggcgcc cgaacgggcg cccgagcagc tcgatcgtcc
     1441 cggcatccgg gtggatcagg ccgagcaggc agcggatcgt cgtcgtcttg cccgcgccgt
     1501 tcggcccgag gaagccgtag atgacgccgc gcgggaccgc caggtcgagc ccgtccaggg
     1561 cgatcgtgtg gccgtacgcc ttgcggggcc cgtgcgtcgc gacggcgaac gcgtcggtcg
     1621 aggccgtcac ccggcgtcgg caccgccggc cgatcggccg gggtcgtccc acaggggctg
     1681 catctcgggc tcggcccggc gtggc
//
LOCUS       DATDDI010000145         2258 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_65446, whole genome shotgun sequence.
ACCESSION   DATDDI010000145 DATDDI010000000
VERSION     DATDDI010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65446"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1291
                     /gene="gltX"
                     /locus_tag="VIU37_02075"
     CDS             <1..1291
                     /gene="gltX"
                     /locus_tag="VIU37_02075"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEY6012757.1"
                     /translation="AGEAARGPHAPYRQMERLPNYAAAADRLLAADMAYPCYCTPDEL
                     ESDRTAQEAARLPPRYVGRCATLTPAERAAREAEGRRGALRFRVGTGVVAFDDIVRGR
                     VEIDVANLGGDFVIVRADGSPLYNFTVVVDDADMEISHVIRGEDHISNTPKQLLIFRA
                     LGYPEPRFAHLPLILNADRTKMSKRKSQTALSDYIAQGFIREALVNYLALLGWATGTE
                     EEVLPIDEIAERFDLAAVHKGGAIFDRERLEWLNGQWIRRLEPEDLIERLRPFVEAEH
                     VAGRIDWIPSDDELRAFLPVMRERLPTLGAIGELAGFLWVESVPVDPAVLVPKRWDAD
                     TTRDGLAGARSTIAAVGEVTFEADELEPPLRALAEARGWKAGDLFMAIRVAITGRTAT
                     PPLFDTMVALGRDRVLDRLDRALAVLADGHRSPMADS"
     gene            1368..1760
                     /locus_tag="VIU37_02080"
     CDS             1368..1760
                     /locus_tag="VIU37_02080"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY6012758.1"
                     /translation="MTHDDVQAWLDRYIDAWRTYDPAAIGDLFAEDAEYRYHPYDEPE
                     RGRDTIVRDWVEPEGGASTRDAPGSWDAHYEPYAVEGDRAVATGWSRYFATGDTPEKL
                     YHNVYLLEFDGDGRCRSFIEYYVLQRTD"
     gene            1843..>2258
                     /locus_tag="VIU37_02085"
     CDS             1843..>2258
                     /locus_tag="VIU37_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002068740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6012759.1"
                     /translation="MARTILVVDDEPTLRETLVDALEADGFRVVSAADGREALTRFRA
                     ERPDLVLLDLMLPELSGIEVCRIIRAESGVPIVMLTAKDSELDKVVGLELGADDYVTK
                     PFSLRELSARIRALFRRSDHAVAVDAPPAVIDLGPV"
BASE COUNT          328 a          807 c          804 g          319 t
ORIGIN      
        1 cgccggcgag gcggctcgcg ggccgcacgc cccgtaccgc cagatggagc ggctgccgaa
       61 ctacgccgcc gcggccgatc ggctgctggc cgccgacatg gcctacccgt gctactgcac
      121 gccggacgag ctcgagtccg accgtacggc ccaggaggcc gccaggctcc cgccccggta
      181 cgtcggccgg tgcgcgacgc tcacgcccgc ggagcgggcc gcgcgcgagg ccgagggccg
      241 ccgcggcgcg ctccggttcc gcgtcgggac gggcgtcgtc gcgttcgacg acatcgtgcg
      301 tggccgggtc gagatcgacg tcgccaacct cggcggagac ttcgtgatcg tccgggccga
      361 cggctcgccg ctctacaact tcaccgtggt ggtcgacgac gcggacatgg agatcagcca
      421 cgtgatccgc ggcgaggacc acatctccaa cacgccgaag cagctgctga tcttccgcgc
      481 gctcgggtac ccggagccgc ggttcgcgca tctcccgctc atcctcaacg cggaccggac
      541 gaagatgagc aagcgcaaga gccagacggc gctgtccgac tacatcgccc agggcttcat
      601 ccgcgaggcg ctggtcaact acctcgccct gcttggctgg gcgaccggca ccgaggaaga
      661 ggtcctgccg atcgacgaga tcgccgagcg gttcgacctc gcggcggtcc acaagggcgg
      721 cgcgatcttc gatcgggagc ggctcgagtg gctcaacggc cagtggatcc gccgcctcga
      781 accggaggac ctcatcgagc gcctgcgtcc gttcgtcgag gccgagcacg tcgccgggcg
      841 gatcgactgg atcccgtccg acgacgagct ccgcgcgttc ctgcccgtga tgcgcgagcg
      901 gctgccgacg ctgggcgcga tcggggagct cgccggcttc ctgtgggtcg agtcggtccc
      961 ggtggatccg gccgtcctcg tccccaagcg ctgggacgcg gacacgacac gggacggact
     1021 ggccggcgcg cggtcgacga tcgccgcggt cggcgaggtg accttcgagg ccgacgagct
     1081 ggagccgccg ctccgcgcgc tggcggaggc ccgcggctgg aaggccggcg acctgttcat
     1141 ggcgatccgc gtggcgatca ccgggcggac cgcgaccccg ccgctgttcg acacgatggt
     1201 ggcgctcgga cgcgatcggg tgctcgaccg gctcgaccgg gccttggcgg tcctcgcgga
     1261 cggccaccga tcgccgatgg cggattcctg acaggagctg tcctgtatga aggtcacgct
     1321 cgcgcgacac tgccggacga ccggtccacg ctgaggaggt tgcgatcatg acccacgacg
     1381 acgtccaggc ctggctcgat cgctatatcg acgcgtggcg gacctacgat ccggccgcca
     1441 tcggcgacct gttcgccgag gatgccgagt accgctacca cccgtacgac gagccggaac
     1501 gcgggcggga cacgatcgtc cgcgattggg tcgagcccga gggaggcgcc agcaccaggg
     1561 acgcgcccgg cagctgggac gcccactacg agccgtacgc cgtggagggg gaccgggccg
     1621 tcgctacggg ctggagccgc tacttcgcca cgggcgatac gcccgagaag ctctatcaca
     1681 acgtctacct gctcgagttc gacggtgacg gccggtgccg cagcttcatc gagtactacg
     1741 tgctgcagcg gacggactga ccgccaggcg ccgggcgccg ggcggcgggc gccccgaggc
     1801 acgccaatcc ggcgttaaca cgcgtggcta tccttgtcgg agatggcacg cacgatcctc
     1861 gtcgtggacg acgagccgac cctgcgcgag accctggtcg acgcgctcga ggccgacgga
     1921 ttccgggtcg tttccgccgc cgacggccgg gaggcgctga cccggttccg tgccgagcga
     1981 ccggacctcg tcctcctcga cctgatgctc cccgagctgt ccgggatcga ggtctgccgg
     2041 atcatccggg ccgagtccgg cgtcccgatc gtgatgctga ccgccaagga ttcggagctg
     2101 gacaaggtcg tcgggctcga gctcggcgcc gacgattacg tcaccaagcc gttcagcctg
     2161 cgcgagctgt cggcgcggat ccgggcgctc tttcgccggt ccgaccacgc cgtggccgtc
     2221 gacgcgccgc cggcggtgat cgatctcggt ccggtcca
//
LOCUS       DATDDI010000146         3651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_273537, whole genome shotgun sequence.
ACCESSION   DATDDI010000146 DATDDI010000000
VERSION     DATDDI010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3651
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273537"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VIU37_02090"
     CDS             complement(<1..728)
                     /locus_tag="VIU37_02090"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEY6012760.1"
                     /translation="MPLDQRSTDRVSPVPGPLTGIRVVDCSTVLAGPYCTMLLGDLGA
                     DVVKVEPPEGDATRGWGPPWVGPDREGERTAAYYLAVNRNKRSLRLDLKVPAGREVLS
                     RLLARADVVVENHRVGGFARLGFDDATLERLNPALVHLAISGFGPNGPAATRPGYDFA
                     IQAASGLMSITGAPDASGGGPTKVGVAISDVVTGMLGAVAVLGALLGRERGRAALAND
                     TRPADGTDVATPAGGQRIDISLLGA"
     gene            complement(769..1425)
                     /locus_tag="VIU37_02095"
     CDS             complement(769..1425)
                     /locus_tag="VIU37_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012761.1"
                     /translation="MIESLGRRLRVVFGRASTVEPVATERPDRGRTAREVEFVAYGED
                     CVLSGVVRMATDRLTDMLNEHDEYLLVNVLVEGLVGDRSVEVTEVLVRRDELLIVHAA
                     GPRGNQGRRHRTRAHPVAIQLGPYHVRGYLHALPGADPIQGIRRRQPMVPLTDAWIEF
                     PAVTGRPRLRIGTVMVNREQVDWIVPAVDEEVELPDLPLSGERGPLVKDFTGALFERP
                     "
     gene            complement(1627..2232)
                     /locus_tag="VIU37_02100"
     CDS             complement(1627..2232)
                     /locus_tag="VIU37_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012762.1"
                     /translation="MINRLPQRLRLGFSSASAGESQPAPDAGQVDFVAYGEDCILSGR
                     AVLDADRLSDMLNAHDEYLVSGLSVSRFDDDSPFELDDEIAIPRDEIYLVHASGPRGD
                     AARRHRTMPQHLAVSMGPYKVRGFFHALPGADPVVAFRRRKVMVPLTDARIEFTIHGE
                     RREVQVDTLIVNREQIDWVQAMLPTEVEFPERARGLVPKPA"
     gene            2307..3263
                     /locus_tag="VIU37_02105"
     CDS             2307..3263
                     /locus_tag="VIU37_02105"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEY6012763.1"
                     /translation="MTTEPTGHRPTLMTVHAHPDDETIGTGGAMAKAVAEGRRVVLVT
                     CTRGEMGEIVVPEMDTPENHRRLGELRAAELEAAMGVLGVTEWENLGYHDSDMMGRPG
                     NNDPRNFWQADLDEATRRLVWLIRRYQPDVMTTYNSFGGYGHPDHIRTHDVAVRAFPR
                     AGDPAWYPEQLAPEHGGTGPSADEGGLAPWSPSKLYEQAIPASVRARMEEALAARGQK
                     SFWSPPDDATPEQVAEMEAFAARMLVPDEQVTTWIDISGDPLERKWKAIHEHRTQIAA
                     DSPFMLMGIDGWRDGWGKEAYILRETRVETATPESDLFAGIA"
     gene            complement(3269..>3651)
                     /locus_tag="VIU37_02110"
     CDS             complement(3269..>3651)
                     /locus_tag="VIU37_02110"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEY6012764.1"
                     /translation="IVFPHWGIEYRNKPFEAQQRLARDIIDAGADMIIGNHAHWAGAV
                     EIYKGKPIWYALGNFVFDQTWSEPTMEGITLELTFRGATLAQVRIRPHIILDKAQPNF
                     MDPAGDGKVVLGQVYSASKGLLPW"
BASE COUNT          562 a         1267 c         1309 g          513 t
ORIGIN      
        1 gcgccgagga gcgagatgtc gatccgctgc ccgccggccg gcgtggcgac gtccgtgccg
       61 tcagcgggcc gggtgtcgtt cgccagcgcg gcccggccgc gttcccggcc cagcagcgcg
      121 cccagcacgg cgacggcgcc gagcatgccg gtcacgacgt cgctgatcgc cacacccacc
      181 ttggtcggcc cgccgccgct ggcgtcgggg gccccggtga tcgacatgag gccactggcg
      241 gcctggatcg cgaagtcata gccgggccgg gtcgccgccg ggccgttcgg cccgaagccg
      301 gagatcgcga ggtggacgag tgccgggttg agccgctcga gcgtcgcatc atcgaagccg
      361 agccgcgcga agccgccgac ccgatggttc tcgaccacga cgtcggcgcg cgcgagcagg
      421 cggctcagga cctcgcgccc ggccggcacc ttgaggtcga gccgcaggct gcgcttgttt
      481 cgattgaccg ctaggtagta ggccgcggtg cgctcaccct cgcggtccgg gccgacccag
      541 ggtggtcccc agccacgggt cgcgtcgcct tcgggaggct ccaccttgac cacgtcggcc
      601 ccgaggtcgc cgagcagcat cgtgcagtac ggtccggcca ggacggtcga gcagtccacg
      661 acccggatcc ccgtgagcgg acccggaacc ggggagacgc gatcggtgga acgctggtcg
      721 agcggcatgg cacggcgatg gtagccgcca cgccgggcgg tggacggact acggacgctc
      781 gaacagggcc cccgtgaagt ccttgaccag cgggcctcgt tcgccgctga gcggcaggtc
      841 gggcagctcg acctcctcgt ccacggccgg gacgatccag tcgacctgct cgcggttgac
      901 catcacggtc ccgatccgca gccgtggccg gccggtgacc gccgggaact cgatccacgc
      961 gtcggtcagg ggcaccatcg gctggcgacg ccggatcccc tggatcgggt cggcgcccgg
     1021 cagggcgtgg aggtagccac ggacgtggta cggacccagc tggatggcga cgggatgcgc
     1081 ccgcgtccgg tgccgccggc cctggttccc acgcggaccc gcggcatgga cgatgagcag
     1141 ctcgtcgcga cggacgagga cctcggtgac ctccacgctc cggtccccca cgaggccttc
     1201 gacgaggacg ttgaccagga ggtactcgtc gtgctcgttg agcatgtcgg tgagacgatc
     1261 cgttgccata cgcacgacgc cggacaggac gcagtcctca ccgtaggcca cgaactcgac
     1321 ctcacgggcg gtccggcccc gatcgggtcg ctcggtggca accggttcga ccgtggaggc
     1381 ccggccgaag acgacgcgga ggcggcgtcc gagactctcg atcatgctgg aatcgtcagc
     1441 gctccaccgg cccgcgtaca cccgccagga agtacctgtg ggagattcgc ggtgatcgcc
     1501 tgcaccgtgg ggtccggccc ggtaccaggc cggccatggt tcgaacgtac gggacgcccg
     1561 gcgattcgcg cgtgggggga ggtgaccgcg gtgcgcgcac gcgccggcct gccggcgcgc
     1621 ggctcgtcag gcgggcttcg gaaccagccc cctggcacgc tccgggaact cgacctcggt
     1681 cggcagcatg gcctggaccc agtcgatctg ctcgcgattg acgatcaggg tgtcgacctg
     1741 gacctcgcgt cgctcgccgt ggatcgtgaa ctcgatccgg gcgtcggtga gcgggaccat
     1801 caccttccgg cggcggaagg cgaccaccgg gtccgcgccc gggagcgcgt ggaagaatcc
     1861 gcggaccttg tagggaccca tgctgacggc caggtgctgg ggcatggtcc gatgtcgccg
     1921 cgcggcatcg ccccgcggtc cgctcgcgtg gaccaggtag atctcgtcgc gcgggatggc
     1981 gatctcgtcg tcgagctcga acgggctgtc atcgtcgaag cgggagaccg acaggccgga
     2041 caccaggtac tcatcgtggg cgttgagcat gtcgctgagc cgatcggcgt cgagcacggc
     2101 tcgaccggac aggatgcagt cctcgccgta ggccacgaag tcgacctgac cggcgtcggg
     2161 agccggctgg ctctcgcccg cgctcgcgct cgagaagccg agacggagcc gctgcggcaa
     2221 tcggttgatc atggttgcag gttgacgatg cgctgtggca tcccgacacc gcccaaaagt
     2281 accgcctgcg ctagcatcgc ctggctatga cgaccgaacc gacgggccac cgccccaccc
     2341 tgatgaccgt tcacgcccat cccgacgacg agaccatcgg gaccggcggg gccatggcca
     2401 aagccgtcgc cgaggggcga cgggtcgtgc tggtcacctg tacccggggc gagatgggcg
     2461 agatcgtcgt gcccgagatg gacacgccgg agaaccaccg ccggctcggc gagctccggg
     2521 cggccgagct cgaagccgcg atgggcgtcc ttggcgtcac cgagtgggag aacctcggct
     2581 accacgattc ggacatgatg ggccgccccg gcaacaacga tccgcgcaac ttctggcagg
     2641 cggacctgga cgaggcgacc cgccggctgg tctggctcat ccggcgctac cagcccgacg
     2701 tcatgacgac gtacaactcg ttcggcggct acggccaccc cgatcacatc cgcacccacg
     2761 acgtcgccgt gcgcgcgttt ccgcgggccg gcgatccggc ctggtacccg gagcagctgg
     2821 cacccgagca tggcgggacg gggccgtcgg ccgacgaggg gggcctggcg ccgtggtcgc
     2881 cgtcgaagct ctacgagcag gcgatccccg cctcggtccg ggccaggatg gaggaggcgc
     2941 tcgccgcacg cggccagaag agcttctggt cgccgccaga cgacgcgacc ccggagcagg
     3001 tcgccgagat ggaggcgttc gcggccagga tgctcgtccc cgacgagcag gtcacgacct
     3061 ggatcgacat ctcgggcgac ccgctcgaac gcaagtggaa ggcgatccac gagcaccgga
     3121 cgcagatcgc cgcggacagc ccgttcatgc tgatgggcat cgacggctgg cgcgacggct
     3181 ggggcaagga ggcgtacatc ctccgcgaaa cgcgcgtcga gacggccacg cccgaatcgg
     3241 acctgttcgc ggggatcgcc tagtcagctc accagggcag cagccccttt gacgccgagt
     3301 acacctggcc cagcacgacc ttgccgtcgc cggccggatc catgaagttg ggctgggcct
     3361 tgtccaggat gatgtgcggc cggatccgca cctgggcgag ggtggcgccg cggaaggtca
     3421 gctcgagggt gatcccctcc atcgtcggtt ccgaccaggt ctggtcgaag acgaagttgc
     3481 ccaacgcgta ccagatcggc ttgcccttgt agatctcgac cgcccccgcc cagtgggcgt
     3541 ggttgccgat gatcatgtcg gcgcccgcgt cgatgatgtc gcgcgccagt cgctgctggg
     3601 cctcgaacgg cttgttccgg tattcgatgc cccagtgcgg gaacacgatg a
//
LOCUS       DATDDI010000147         7118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_502520, whole genome shotgun sequence.
ACCESSION   DATDDI010000147 DATDDI010000000
VERSION     DATDDI010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 7118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7118
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502520"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1047)
                     /locus_tag="VIU37_02115"
     CDS             complement(<1..1047)
                     /locus_tag="VIU37_02115"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6012765.1"
                     /translation="MANRRFAALIGAAAVVFAACSSSGGTAAPSTASSGGGSAAGCTV
                     GVSWNNYQEERWAKWDEPAIKAALDAAGAKYISNDAKSSAETQATNVENLISQGAKVI
                     IVLAQDGTAIKPSVAAAIAQGIPVIAYDRLIEDPKAFYITFDNVLVGKMQAEALLKVK
                     DSGNFVVIKGNKADANADFLRSGMVQAGLPDVGQSSDKLKNVGETYTDNWDPAKAQTN
                     MEQFLTANKNQIDIAFVENDGMAGGAIAALKAQGLAGKVPVSGQDGDAAALNRVALGT
                     QTVDVWKDARLLGKTAGEVAAQLCSGTTIDKVSGAAVFKTPGGNDVNSILLTPNPITK
                     DNLNDVLSAGWIDKA"
     gene            complement(1318..2493)
                     /locus_tag="VIU37_02120"
     CDS             complement(1318..2493)
                     /locus_tag="VIU37_02120"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY6012766.1"
                     /translation="MSAIVRELHVSGARSRSELVARTGLTRSAIRGLIREFVDAGLAT
                     EVRATPLGGPGRPSPLVRPNPESAVVLAMDVAVDSLAVALVGLGGDVLDLIRIQRPRG
                     HSSVAEVVDQLADQARTILARSKGDALIGIGVAVAGIVRRSDGFVAMAPNLGWRDVPL
                     GAPLARALEATVPISIANEADLGALAELHRGAAVGADNVLYLSGEVGVGGGLIVDGKP
                     LTGVAGFGGEVGHMPVNPSGIACQCGSFGCWETEVGEEALLRLAGHPADGGWAEVDAV
                     LEEARAGSAVALAAFDTVGRWLGVGLAGLVNVLNPRLVVLGGLFGRIHPFAGDALEGE
                     LDRRSLPGSRALVRVVPARLGVDAPLLGAAELAFEPLLADPAARLRPRGMRAELASA"
     gene            2714..4594
                     /locus_tag="VIU37_02125"
     CDS             2714..4594
                     /locus_tag="VIU37_02125"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF044997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vanadium-dependent haloperoxidase"
                     /protein_id="HEY6012767.1"
                     /translation="MVTIRPRRRLAAVAVLAAAVVLVSGTLAITHPWSSGPSCPAVAR
                     NPDWSVARRWDEALLDAIRRALPNPPVHARNLFHTSVAMWDAWAAYDPAATGYVVNEK
                     VQASDVPAARAEAISYAAFRVLSARYIKAVGGDQSLSEFDDVMDSLCYPLDVTTTEGN
                     SPAAVGNRIAAAVLAYGKTDGSNETGGYSSPDYRTVNPPLVVAKPGTTMADPNRWQPL
                     QIEHMISQNGIPVTNGVQQAVGPHWGHVKSFAMPDGGTAGVPIDPGPPPRLGDPATDQ
                     AFKDQVVEVIRDSSLLDPTDGATIDISPGARGGNSLGTNDGMGHPVNPATGQPYPSDV
                     VNLGDFARVMAEFWADGPKSETPPGHWNVLANLVSDELSPDLRIGGTGPAVDRLQWDV
                     KLYLALNGAVHDAAIAAWGLKGAYDGTRPISMIRYMGGLGQSTDPNEPSYNKEGLPLV
                     PGLIEVISKATTAPGQRHAALAGHEGEIAIHAWAGNPKDPKTQIGGVKWILAANWVPY
                     QLPTFVTPAFQGYISGHSTFSRAGAEVLTAFTGSEFFPGGISGYTIKAGSLKFEAGPT
                     TDIRLEWATYYDAADQAGQSRLYGGIHVQIDDFTGRRIGAECGMEAWARAQQLYGGQA
                     PG"
     gene            4591..6252
                     /locus_tag="VIU37_02130"
     CDS             4591..6252
                     /locus_tag="VIU37_02130"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY6012768.1"
                     /translation="MSPGTRKRALLAGAVVVIAAVLVGAGIVLVVPRGPAGALGPARF
                     LDETATAGVDQTYDGGPTAFVGGGVAVFDCNGDGRDELYLAGGSHPAALYRNDSPIGG
                     KLRFSQLHDPATDLTGVNGAYPLDIDGDGIVDLAVLRVGGADLLRGLGDCRFENADRA
                     WGFDGGRGWSTAFSATWEGSATLPTLALGNYVRLDATGQPGDSCADNALYRPDAGGQG
                     YATPTALSPGYCTLSMLFSDWDRSGRRDLRVTNDRHYYVDGEDQLWRVAPGEPPRLYT
                     QDDGWVAMQIWGMGIASYDVTGDGYPDVFLTSQGDNRLQTLAAGPSQPTYRDIALKRG
                     VTAAQPFTGGDVLPSTAWHPEFEDVNNDGYMDLFISKGNVSAMPDYAARDPSNLLLGQ
                     PDGTFTEAADAAGIVTFARGRGAALADLNLDGLLDLVQVNLGAPVMLWRNVGSGDSAG
                     SVPMGGWLALRVHQPDPNRDAIGGWLEVRVGDTTTRRELTIGGGHIGGQLGWIHVGLG
                     SATAADVRVQWPDGEVGPWIRVSANTFADIERGATEARPWQPPVN"
     gene            6288..>7118
                     /locus_tag="VIU37_02135"
     CDS             6288..>7118
                     /locus_tag="VIU37_02135"
                     /inference="COORDINATES: protein motif:HMM:NF013486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family N-terminal
                     domain-containing protein"
                     /protein_id="HEY6012769.1"
                     /translation="MPTARLARIDLPEFGMPDASPELPDAIYPARIARLRERIEALGY
                     DRLVVYSDREHSANLAYLTGFDPRFEEALLVLGPSGDPAILVGNECYAMAGTAPVTMR
                     RHRFQDFSLPSQPRDRSRPLAELLGDEGIGRASRVGVVGWKTYAGPDRIDVPAYIVDE
                     LRRLAGPDGVVENATGLLIDPADGLRLINEVEQLAAFEYAACQTSQGIRRLLAGLRPG
                     MTEREAVRLLGWNGMPLSCHLMLTAGPRATLGLLSPGDRPIERGDRFTVAFGIWGALN
                     C"
BASE COUNT         1039 a         2618 c         2462 g          999 t
ORIGIN      
        1 ggccttgtcg atccagcccg cgctcaggac gtcgttcagg ttgtccttcg tgatcgggtt
       61 cggcgtgagc aggatcgagt tgacgtcatt gccacccggc gtcttgaaga cggccgcgcc
      121 gctgaccttg tcgatcgtgg tgccgctgca cagctgtgcc gcgacctcgc cggccgtctt
      181 gccgagcagc cgtgcgtcct tccagacgtc gacggtctgt gtcccgagcg cgacccggtt
      241 gagggcggcg gcgtcgccgt cctggccgga gaccgggacc ttgcccgcga ggccctgagc
      301 cttgagcgcc gcgatggcgc cgccggccat gccgtcgttc tcgacgaagg cgatgtcgat
      361 ctggttcttg ttcgcggtca ggaactgctc catgttggtc tgggccttcg ccgggtccca
      421 gttatcggtg taggtctcgc cgacgttctt gagcttgtcg ctgctctgcc ccacgtcggg
      481 aagcccggcc tggaccatcc cggagcgcag gaagtcggca ttcgcgtcgg ccttgttgcc
      541 cttgatgacg acgaagttgc cggaatcctt gaccttcagg agggcctcgg cctgcatctt
      601 gccgacgagg acgttgtcga acgtgatgta gaaggccttc ggatcctcga tcaggcggtc
      661 ataggcgatc accgggatgc cctgggcgat cgctgcggcg accgacggct tgatggccgt
      721 gccgtcctgg gcaaggacga tgatgacctt ggccccctgc gagatcaggt tctcgacgtt
      781 ggtggcctgc gtctcggccg acgacttggc gtcgttcgag atgtacttgg cgccggcggc
      841 gtcgagggcg gccttgatgg cgggctcgtc ccacttggcc cagcgctctt cctggtagtt
      901 gttccacgag acgccgacgg tgcatccggc agcgcttccg ccaccgctgc tcgcggtgct
      961 cggggcggcc gttccgccac tgctcgagca ggccgcgaac acgaccgccg cggctccgat
     1021 caacgccgca aatctgcgat ttgccatgct ttccattcct cctcgttggg acctgatccc
     1081 tcgctcggtt ccacgtgtcc cgcgctaggc taccaccctc ccaaggcgga ttccccgacg
     1141 gaacgtacgc tccgccggcc gatctgaccg gctgctggct tgcgccccgg gcgcccacgc
     1201 gctcgggacg tggaccgctg acttgggccg tccgccgggc atctcgcggt gccatggcgg
     1261 gcggtgggac cggaccgggg acgggcccgg gccgggccat cgacgacggt aggcatgcta
     1321 ggcactcgcc agctccgccc gcatgccgcg ggggcgcagg cgcgccgccg ggtcggcgag
     1381 gagcggctcg aaggcgagct cggccgcgcc gagcagcggc gcatccacgc cgaggcgggc
     1441 cggcaccacg cggacgaggg cccgcgaacc gggcaggctc cgccggtcca gctctccctc
     1501 gagcgcatca ccggcgaagg gatggatccg gccgaacagc ccacccagga ccaccagccg
     1561 cgggttgagg acgttgacca ggcccgcgag tccgacgccc agccagcgcc cgacggtgtc
     1621 gaacgcggcg agggcgaccg ccgaacccgc ccgggcctct tcgagcaccg cgtcgacctc
     1681 ggcccagccg ccatccgccg gatggccggc caggcgcagc agggcttctt cgccgacctc
     1741 ggtctcccaa cagccgaacg acccgcactg gcaggcgatg ccgctcgggt tgaccggcat
     1801 gtgaccgacc tcgccgccga agcccgccac gccggtgagc ggcttgccgt cgacgatcag
     1861 gccaccgccg acgccgacct cgcccgaaag gtagagcacg ttgtcggcac cgaccgccgc
     1921 gccgcggtgc agctcggcca gcgcacccag gtcggcctcg ttggcgatcg agatcgggac
     1981 ggtggcctcg agcgcccggg ccagcggcgc acccagcggc acgtcgcgcc agccaaggtt
     2041 cggggccatc gcgacgaagc cgtccgagcg ccgcacgatg ccggcgacgg ccacgccgat
     2101 cccgatcagg gcgtcaccct tcgatcgggc caggatcgtc cgcgcctggt cggccagctg
     2161 gtcgaccacc tccgcgaccg aggaatggcc gcgcggccgc tggatccgga tcagatcgag
     2221 cacgtcgccg ccgagcccga ccagggcgac cgccagcgaa tcgaccgcga cgtccatcgc
     2281 caggacgacg gcgctctcgg ggttgggccg gaccagcggc gacgggcggc cgggaccgcc
     2341 gagcggcgtg gcgcgaacct cggtggcaag gcctgcatcg acgaactccc ggatcagccc
     2401 acggatcgcg ctgcgggtaa gtccggtccg cgccaccagc tcggatcggg agcgggcgcc
     2461 actgacgtgc agttcgcgga cgatcgcgct caagttcgca cgacggacgg tttcgctccg
     2521 ttgtccgacc gcgtacagcc gcatcgccac ggatttgtga tcctctcttc taaatcctga
     2581 ggtaggctct tacaacgacg ggccgaagtc aagccggccg ttgcccggac gcgcgatact
     2641 ggctcgctca ccacccgaca tctgtcccgt cccgccggat gttgccgccg ccgagccgac
     2701 tggaggggtt cgcatggtca ccatccgacc caggcgcaga ctcgcggccg tggccgtcct
     2761 ggcggcggcc gtggtgctcg tctccgggac actcgcgatc acccatccct ggtcgagcgg
     2821 gccctcgtgc ccggccgtcg cccggaaccc cgactggtcc gtcgcccggc gctgggatga
     2881 ggcgctgctc gacgcgatcc ggcgcgcgct gcccaacccg cccgtccacg ctcgaaacct
     2941 gttccacacg tcggtggcca tgtgggatgc ctgggctgcg tacgaccccg cggcgacggg
     3001 ctacgtcgtc aacgagaagg tgcaggcatc ggacgtcccg gcggcgcggg ccgaggcgat
     3061 cagctacgcc gcgttccggg tgctcagcgc tcgctacatc aaggcggtcg ggggcgacca
     3121 gtcgctctcg gagttcgacg acgtgatgga ctcgctgtgc tatccgctcg acgtcacgac
     3181 gaccgagggc aacagccctg ccgcggtggg caaccggatc gccgccgcgg tgctcgccta
     3241 cggcaagacc gacggctcga acgagaccgg cggctacagc tcgcccgact accgaaccgt
     3301 caacccgccg ctcgtggtgg ccaagccggg cacgacgatg gcggatccca accgctggca
     3361 gccgcttcag atcgagcaca tgatctcgca gaacgggatc ccggtgacca acggcgtgca
     3421 gcaggcggtc ggcccgcact ggggtcacgt caagagcttc gcgatgcccg acggcggcac
     3481 cgccggcgtg ccgatcgacc cggggccgcc accgcgcctc ggcgatccgg cgaccgacca
     3541 ggccttcaag gaccaggtgg tcgaggtgat ccgtgacagc agcctgctcg acccgacgga
     3601 cggcgcgacg atcgacatct caccgggcgc ccgcggcggc aactcgctcg ggaccaacga
     3661 cggcatgggg caccccgtca acccggccac cggccagccg tatccgagcg acgtcgtcaa
     3721 cctcggggac ttcgcgcggg tcatggccga gttctgggct gacggaccca agtcggagac
     3781 gccgcccggc cactggaacg tgctcgccaa cctggtctcc gacgagctct cccccgacct
     3841 gcggatcggc ggcaccggcc cggccgtcga ccggctccag tgggacgtca agctgtacct
     3901 ggcgctcaac ggggcggtcc acgacgccgc gatcgcggcc tggggcctca agggcgccta
     3961 cgacgggacc cgcccgatct cgatgatccg ctacatgggc gggctcggcc agtcgaccga
     4021 cccgaacgag ccgtcctata acaaggaggg gctgccgctc gtgcccgggc tgatcgaggt
     4081 gatcagcaag gcgaccaccg caccgggcca gcgccacgcc gcgctggccg gccacgaggg
     4141 cgagatcgcc atccacgcct gggccggcaa ccccaaggac ccgaagaccc agatcggcgg
     4201 agtgaaatgg atcctcgccg ccaactgggt cccctaccag ctcccgacgt tcgtgacgcc
     4261 cgcgttccag ggctacatct ccggacacag cacgttcagc cgggcgggcg ccgaggtcct
     4321 gaccgcgttc accgggagcg agttcttccc gggcgggatc agcggctaca cgatcaaggc
     4381 cggctcgctc aagttcgagg ccggaccgac gaccgacatc cgcctcgagt gggcgaccta
     4441 ctacgacgcc gccgaccagg ccgggcagtc caggctgtac ggcgggatcc acgtgcagat
     4501 cgacgacttc acgggccgcc ggatcggcgc cgaatgcggc atggaggcct gggccagggc
     4561 gcaacagttg tacggcgggc aggcgcccgg atgagccccg ggacccggaa gcgagccctc
     4621 ctcgcgggtg cggtggtcgt catcgcggcc gtcctggtcg gcgcgggcat cgtcctggtc
     4681 gtgccgcgcg gaccggccgg ggcccttggt cccgcccgct tcctcgacga gacggcgacc
     4741 gccggcgtgg accagaccta cgatgggggc ccgaccgcgt tcgtgggggg cggcgtcgcc
     4801 gtcttcgact gcaacgggga cggccgggac gagctgtatc tcgccggcgg gagccatccg
     4861 gcagccctgt accgcaacga cagtccgatc ggcggcaagc tccggttcag ccagctccac
     4921 gatccggcga ccgacctgac cggggtcaac ggcgcctacc cgctcgacat cgacggcgac
     4981 gggatcgtcg acctggccgt cctccgggtc ggcggcgccg acctgctgcg cggcctcggc
     5041 gactgccgct tcgagaacgc cgaccgcgcg tggggcttcg atggcgggcg tggctggtcg
     5101 acggcgttca gcgccacctg ggagggttcg gccacgctgc cgaccctcgc gctgggcaat
     5161 tacgtccggc tcgacgccac cggtcagccc ggagactcct gcgccgacaa cgccctctac
     5221 cgacccgacg ccggcgggca gggctatgcc accccgaccg cgctgagccc gggctactgc
     5281 accctgtcca tgctgttcag cgactgggac cgatccggac ggcgcgacct gcgggtcacc
     5341 aacgaccggc actactacgt cgatggcgag gaccagctgt ggcgggttgc cccgggcgag
     5401 ccgccccggc tttacaccca ggacgacggc tgggtggcga tgcagatctg gggcatgggc
     5461 atcgcctcct acgacgtgac cggcgacggg tacccggacg tgttcctcac cagccagggc
     5521 gacaaccggc tccagacgct ggcggccgga ccaagccagc cgacgtaccg cgacatcgcg
     5581 ctcaagcgtg gcgtgaccgc ggcccagccg ttcaccggcg gcgacgtgct cccgtcgacc
     5641 gcctggcacc ccgagttcga ggacgtcaac aacgacggct acatggacct gttcatctcg
     5701 aagggcaacg tcagcgcgat gcccgactac gcggcccgcg accctagcaa cctgctcctc
     5761 gggcagcccg acgggacctt cacggaggcc gccgacgcgg ccggcatcgt caccttcgcc
     5821 cgcggccgcg gcgcggcgct cgccgacctc aatctcgacg gcctgctcga cctcgtccag
     5881 gtcaaccttg gggccccggt gatgctctgg cggaacgtcg gctcgggcga ctcggccggc
     5941 tccgtgccga tgggcggctg gctcgcgctt cgtgtccatc agccggatcc caatcgtgac
     6001 gcgatcggcg gctggctcga ggtgcgcgtc ggcgacacga cgacgcgacg cgagctgacg
     6061 atcggtggcg gccatatcgg cgggcagctc ggctggatcc acgtcggcct cggctcggcg
     6121 accgccgccg acgtccgcgt ccagtggccc gacggagagg tcggaccgtg gatccgcgtc
     6181 tccgcgaaca cgttcgccga catcgaacgg ggcgccaccg aggcgcgacc atggcagcct
     6241 ccggtcaact gacgacggtt cccgactgac ccgaaaggac ggcgcgaatg ccaacggcgc
     6301 gactggcgcg gatcgacctc cccgagttcg gcatgcccga cgccagcccg gagctgccgg
     6361 acgcgatcta ccccgcccgg atcgcgcggc tccgcgagcg gatcgaggcg ctcggctacg
     6421 accggctggt cgtctacagc gatcgcgagc acagcgccaa tctcgcctac ctcaccgggt
     6481 tcgacccccg gttcgaggag gcgctgctgg tcctcgggcc gtcgggcgac ccggcgatcc
     6541 tggtcggcaa cgagtgctac gcgatggccg ggaccgcgcc cgtgacgatg cggcgccacc
     6601 gcttccagga cttcagcctg ccgagccagc cgcgcgatcg ctcgcgacct ctcgccgagc
     6661 tcctgggcga cgagggcatc gggcgcgcga gccgcgtcgg ggtcgtcggc tggaagacct
     6721 atgccgggcc cgaccggatc gacgtccccg cctacatcgt cgacgagctg cgccgcctgg
     6781 ccggccctga cggcgtcgtc gagaacgcca ccggcctgct gatcgacccg gcggacgggc
     6841 tccggctgat caacgaggtc gagcaactgg cggccttcga gtacgccgcc tgccagacgt
     6901 cgcagggcat ccgccggctg ctggccgggc tgcggcccgg catgaccgag cgagaggcgg
     6961 tccggctgct cggctggaac gggatgccgc tctcgtgcca cctcatgctg accgccgggc
     7021 cgcgcgcgac gctcgggctg ctcagcccgg gcgaccggcc catcgagcgc ggcgaccgct
     7081 tcaccgtggc gttcgggatc tggggggcgc tcaactgc
//
LOCUS       DATDDI010000148         1636 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_65599, whole genome shotgun sequence.
ACCESSION   DATDDI010000148 DATDDI010000000
VERSION     DATDDI010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65599"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..488)
                     /locus_tag="VIU37_02140"
     CDS             complement(93..488)
                     /locus_tag="VIU37_02140"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6012770.1"
                     /translation="MASERVVLVVEDEEPNRALLRAVLARASDGRLGPIVLLEAGDLA
                     GARQILADRRIDLVLLDVRLPDGNGLSLIPGEDERTDETPSFVVLSASVLPTERAVAL
                     AAGAADFLAKPYRPSDLLDAIAAQLPAVD"
     gene            complement(488..>1636)
                     /locus_tag="VIU37_02145"
     CDS             complement(488..>1636)
                     /locus_tag="VIU37_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6012771.1"
                     /translation="LYNLVSNAIKYTPDGGHVRVEASRVDGEVRVSVIDDGVGIDAKD
                     HESVFEEFKQVGDPADRQPGTGLGLAVTKRLAEAHDGRMELVSAVGQGSTFTLVLPAP
                     VDQSESGDPDFGRRRELAEAAVDAVEAVVASGDVLVIEDDPSAVRLLREYLEAAGYPV
                     RVAATGESGLASVVERKPAAIILDVLLPGIDGWEVLRRLKADERTHDVPVIIVTVVEE
                     RDVGLALGAADYLVKPIHREALLACLARYVATVAEAGQPRRVLVIDDEAAALALIRAA
                     LEPEGYEVVTAQGGRAALDWARHGQLVDLVVCDLVMPEVDGFEVIAAFKRDRRTAMVP
                     IVVCTAHDLTAAQKARLNGQILGIVAKGQDARLGLLDWLSRSAPRRLN"
BASE COUNT          228 a          608 c          570 g          230 t
ORIGIN      
        1 caggctcggg cgcgggcgtc ggttcggtca tcccccctca cgagagcgcg actcccgcca
       61 tcgtagtccg tcggcgtcgg gcgccgctcg gctcagtcga cggcgggaag ctgcgccgcg
      121 atggcgtcga ggagatcgga cgggcggtac ggtttggcca ggaagtcggc cgctcccgca
      181 gccagcgcga cggcgcgttc ggtgggcagg acgctggcgc tcaggaccac gaagctgggg
      241 gtctcgtcgg tccgctcgtc ctcgcccggg atcaggctca gcccgttgcc gtcgggcagc
      301 cggacgtcga gcaggacgag gtcgatgcgg cgatcggcaa ggatctgccg ggcgccggcc
      361 aggtcgccgg cctccagcag cacgatcggg cccagccgcc cgtcggaggc ccgggccagg
      421 acggcccgaa gcagcgcccg attgggctcc tcgtcctcga cgaccagcac gacccgctcg
      481 gacgccatca gttgagccgc ctcggggcgg atcggctcag ccagtcgagc agaccgagcc
      541 gagcgtcctg gcccttggcc acgatcccga ggatctgccc gttgagccgg gccttctgcg
      601 cagccgtcag gtcatgcgcg gtgcagacga cgatcggtac catcgccgtc cgccgatcgc
      661 gcttgaatgc cgcgatcacc tcgaagccgt ccacctcggg catgacgaga tcgcacacga
      721 cgaggtccac gagctggccg tggcgagccc agtcgagcgc ggcgcggccg ccctgcgcgg
      781 tcaccacctc gtagccttcc ggctcgagtg cggcccggat cagcgcgagc gccgccgcct
      841 cgtcgtcgat caccagcacg cgtctcggct gcccggcctc ggcgaccgtg gccacgtagc
      901 gggcgaggca ggccaggagc gcctcgcggt ggatcggctt gaccaggtag tcggcggccc
      961 cgagcgccag gccgacgtcg cgctcctcga cgacggtcac gatgatcacc ggcacgtcgt
     1021 gggtacgctc gtccgccttg agcctccgca gcacctccca gccgtcgatc cccggcagga
     1081 gaacgtcgag gatgatcgct gcgggcttgc gctcgaccac cgacgcgagg ccgctctcgc
     1141 cggtcgccgc gactcgcacg ggatagccgg cggcctccag gtactcgcgc aggaggcgga
     1201 ccgcgctcgg gtcatcctcg atgaccagga cgtcgcccga cgccaccacc gcctcgacgg
     1261 cgtcgaccgc ggcctcggcc agctcgcgcc gcctgccgaa gtccgggtcg cccgattcgc
     1321 tctggtcgac gggggccgga aggaccagcg tgaacgtgct cccctgcccg accgccgaca
     1381 ccagctccat ccgaccgtca tgcgcttcgg cgaggcgctt ggtgaccgcg agtccgagcc
     1441 ccgtcccggg ctgccggtcg gccggatcac cgacctgctt gaactcctcg aacaccgact
     1501 cgtggtcctt cgcgtcgatt ccgactccgt cgtcgatgac ggatacgcgc acctcaccgt
     1561 cgacgcggga tgcctcgacc cggacgtggc cgccgtccgg cgtgtacttg atggcgttgg
     1621 agacgaggtt gtagag
//
LOCUS       DATDDI010000149         2580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_211232, whole genome shotgun sequence.
ACCESSION   DATDDI010000149 DATDDI010000000
VERSION     DATDDI010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211232"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2580
                     /locus_tag="VIU37_02150"
     CDS             <1..>2580
                     /locus_tag="VIU37_02150"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6012772.1"
                     /translation="QFDPETQQLQWAYDAGLPDAQRAAVRSSALRLGEGLSGTAVALG
                     RVMTAGDYLSGAFPHDRQADLNAAAAGIGDLIVAPIIGESGPLGAIEVFSHRPHTFDA
                     IDEAVLGGLADQAAIAFTNARLIEELERSRMTVARRADTERALREITARIAALRDPDV
                     ILHRVVEEAKRLLGTDGAHLTRMSERGPYLVPVVVAGSEDVANDQAWLLDMEFPLGGG
                     INGLAAEQGRPIWTSDYQADPRVPHEPDDSAVAERLQLCGMAAAPLRAPGGEVIGTLA
                     VSTRKSRSFDDEELDLLQGLADQAAIAITNSTLLTRLTESEARYRYLVEAAPDIVWSI
                     GADARLTFLSDAVIRLTGRRPEDLVGKHFGALVHESSSEVAAFDWTTGMRAGAQEIRG
                     RLNLAGADGRPIPAEFIAMARLDESGRFLGANGSVRDIREQERLEHDLRQSETRYRTL
                     ASSSPDLVFATDAEGRYTFLSDQAERMLGWDAGELLGRSFTELVAPGWEAAAAASYAA
                     LVAEPDLVHTSRIDFLDSRGRPVPLEINVVGISEAGRLTAIHGVARDVSDRDRLEREL
                     RESEARYRFLVENSPDIVFSIDAAGRFSFMSDTIERVAGWRPEQVVGQHFSMVVDVDS
                     YETAAAAWEALAARPAEEQVVHISMVSPDGRKIPVEVSSIGMVDDDGRFAGIHGSTRD
                     ISERARLERELRRQAGELAAGEERAHLARELHDSVTQALFSMTLVTRAVELLLDADPA
                     AAREQLRQLRELQREALAEMRALIFELRPGNLEQDGLTRALRTHTAAIQGRIGLPVVL
                     ESTIQERLPLAVEEVLYRIAQEALHNVIKHAAAHQVRLEVGRTGGAVQLRIEDDGKGF
                     DPA"
BASE COUNT          379 a          919 c          927 g          355 t
ORIGIN      
        1 accagttcga cccagagacc cagcagctcc agtgggcgta cgacgccggc ctgcccgacg
       61 cgcagcgcgc cgccgtccgc tcgagcgcgc tgcggctcgg cgaggggctg tccgggaccg
      121 ccgtggcact cggccgggtc atgaccgccg gcgactacct gtcgggcgcc ttcccgcacg
      181 accggcaggc ggacctgaac gccgccgctg caggcatcgg cgacctgatc gtcgccccga
      241 tcatcggcga gtccggcccg ctgggcgcga tcgaagtgtt cagccatcgg ccgcacacct
      301 tcgacgccat cgacgaggcg gtgctcggcg gcctcgccga ccaggcggcg atcgcgttca
      361 cgaacgcccg cctgatcgag gagctcgagc ggtcgcggat gacggtcgcc cggcgggcgg
      421 acaccgagcg ggctctccgc gagatcacgg caaggatcgc cgcgctgcgc gatccggacg
      481 tgatcctcca tcgggtggtc gaagaggcca agcgcctgct ggggaccgat ggcgcgcacc
      541 tgacccggat gagcgagcgc ggcccatacc tggtgcccgt cgtcgtcgcc ggttcggaag
      601 acgtcgccaa cgatcaggcc tggctgctcg acatggagtt cccgctgggt ggcgggatca
      661 acggtctggc cgccgagcag ggccgtccga tctggacgag cgactaccag gccgacccgc
      721 gagtccccca cgagcccgac gattccgcgg ttgccgagcg tctccagctc tgcggcatgg
      781 ccgcggcgcc actccgggcc ccgggcgggg aggtcatcgg cacgctggcg gtctccacgc
      841 gcaagtcgcg ctcgttcgac gacgaggagc tcgacctgct ccagggcctg gcggatcagg
      901 cggcgatcgc gatcaccaac tccaccctgc tgacccgcct gaccgaatcc gaggcgcgct
      961 accggtatct cgtcgaggcg gctccggaca tcgtctggtc gatcggggcc gatgcccgcc
     1021 tcaccttcct gtcggatgcc gtcatccgcc tgaccggccg ccggcccgag gatctcgtcg
     1081 ggaagcactt cggggcactc gtgcacgagt cgtcgagcga ggttgccgca ttcgactgga
     1141 cgacggggat gcgggcgggc gctcaggaga tccgcgggcg cctgaacctc gccggcgccg
     1201 atggccggcc gatcccggcc gagttcatcg cgatggccag gctcgacgaa tcgggccggt
     1261 tcctcggtgc caacgggtcc gttcgggaca tccgcgaaca ggagcggctc gagcacgacc
     1321 tgcgccagtc ggagactcgc taccggaccc tcgcgtcgtc gtcgccggac ctcgtgttcg
     1381 ccaccgacgc cgaaggtcgc tacacgttcc tgagcgacca ggcggagcgg atgctgggct
     1441 gggacgccgg ggagctgctc ggtcgttcgt tcaccgaatt ggtcgcgccg ggctgggagg
     1501 cggcggcagc agccagctac gcagccctgg tcgccgagcc ggacctcgtg catacctcgc
     1561 ggatcgactt cctcgattcg cgcggccggc cggtgccgct cgagatcaac gtcgtcggaa
     1621 tctccgaggc gggccgcctc accgccatcc atggcgtcgc acgggacgtc agcgaccggg
     1681 accgtctcga gcgggaactg cgcgagtcgg aggctcgcta ccggttcctc gtcgagaact
     1741 cgccggacat cgtgttctcg atcgacgccg cgggccgttt ctcgttcatg tccgacacga
     1801 tcgagcgagt cgccggctgg cggccggagc aggtcgtcgg ccagcacttc tcgatggtcg
     1861 tcgacgtcga cagctacgag acggccgccg ccgcctggga ggcgcttgcc gcccgcccgg
     1921 ccgaggagca ggtggtccac atcagcatgg tcagcccgga cggccggaag atcccggtcg
     1981 aggtcagctc gatcgggatg gtcgacgacg acgggcggtt cgccggcatc cacggctcga
     2041 cgcgcgacat cagcgaacgg gcccggctcg agcgggagct gcgccgccag gcaggcgagc
     2101 tggccgccgg cgaggagcgc gcccacctgg cccgcgagct gcacgactcg gtgacccagg
     2161 cgctcttctc gatgacgctg gtgacgcgcg ccgtcgagct gctgctcgac gcggatccgg
     2221 ccgcggcgag ggaacagctc cggcagctcc gcgagctgca gcgcgaggcg cttgcagaga
     2281 tgcgcgcgct gatcttcgag ctccggccgg gcaacctcga gcaggacggc ctgacccggg
     2341 cactccggac gcacacggcg gcgatccagg gacggatcgg gctgccggtc gtgctcgaga
     2401 gcacgatcca ggagcggctg ccgctggcgg tcgaggaggt cctctaccgg atcgcgcagg
     2461 aggcgctcca caacgtcatc aagcacgccg ccgcgcacca ggtccggctc gaggtgggac
     2521 ggaccggagg ggccgtccag ctgcggatcg aggatgacgg caagggattc gaccccgccc
//
LOCUS       DATDDI010000150         2091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_190382, whole genome shotgun sequence.
ACCESSION   DATDDI010000150 DATDDI010000000
VERSION     DATDDI010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190382"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..626
                     /locus_tag="VIU37_02155"
     CDS             <1..626
                     /locus_tag="VIU37_02155"
                     /inference="COORDINATES: protein motif:HMM:NF025109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012773.1"
                     /translation="GLAAAADRRIGGYSGGMRQRLGIAQALLHRPEILFLDEPVSSLD
                     PEGRRDLLELIAGLRGEATVVFSTHVLSDVERICDRIAILDRGRRVTEGPLDELLAAH
                     ARPIYRLLPASGQDAAVATLIERLRDAPWSTDVGADGGLVRVTVSDEAAAGAGLLPLV
                     VAAGVVLESFERARPTLEDVFLELVGPAPTAALDGRGFVRPREVTDR"
     gene            623..1384
                     /locus_tag="VIU37_02160"
     CDS             623..1384
                     /locus_tag="VIU37_02160"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6012774.1"
                     /translation="MTGFGALLRKEILEQWRTARLQLVATVFLLVGLSSPLLARFTPE
                     ILKAVASGQFQIMLPTPTAADAYDQLAKNLGQFGALIAVLLAMGSVATEKERGTAALI
                     LTKPASRGAYLAAKLVAIAFTLGVATAIAAAGAWFYTLVLFEPLDVVGFTAAALLQWL
                     ALVAFAAITFLGSTLTRSALAAAGLGIAAFIVLGILSIVPAIGTYLPTGLGAPARALA
                     LGQPGVDVLGPTVAAIVLIGALAGVSWLAFRRQEL"
     gene            complement(1413..>2091)
                     /locus_tag="VIU37_02165"
     CDS             complement(1413..>2091)
                     /locus_tag="VIU37_02165"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEY6012775.1"
                     /translation="GGAASANDAGPDADTGLATPTGGQRIDISLLGATLAGLVNQAQN
                     AFVTGRAPERLGNAHPNIVPYETFETADRPIAIAVGSERQWPRLCEVLGRPELAADPR
                     FATNGDRVVNRAALRPILAARLRELGAAEWLAVLDSASIPCAPINDIVAAFASPEAVA
                     LDMVVEQEHPAWGVIRQVGVPFKLAATPATIRTPPPALGEHAAQILAELGYTDSEVAV
                     LLAEGTI"
BASE COUNT          228 a          768 c          787 g          308 t
ORIGIN      
        1 cgggcctggc cgccgccgcg gaccggcgga tcggcggcta ctcgggcggc atgcgccagc
       61 ggctggggat tgcccaggcc ctcctccacc gccccgagat cctgttcctg gacgagccgg
      121 tcagctcgct cgacccggag ggccggcgcg acctgctcga gctgatcgcg gggctccgtg
      181 gcgaggccac ggtggtgttc tcgacgcacg tgctgtccga cgtcgagcgg atctgcgacc
      241 ggatcgcgat cctcgatcgc gggcggcggg tcaccgaggg accgctcgac gagctgctgg
      301 ccgcgcacgc ccggccgatc taccggctcc tcccggcgtc cgggcaggat gcggcggtcg
      361 ccacgctcat cgagcggctt cgtgacgcgc cgtggtcgac ggacgtcggg gccgacggcg
      421 ggctggtccg ggtgacggtc tccgacgagg cggcggccgg tgccgggctg cttccgctcg
      481 tcgtggccgc cggcgtcgtc ctcgaatcgt tcgagcgtgc gcgccccacc ctcgaggacg
      541 tgttcctcga gctggtcggt ccggcgccga ccgccgccct cgacgggcgc ggcttcgtgc
      601 ggccgcgcga ggtcaccgac cgatgaccgg gttcggcgcc cttctgcgca aggagatcct
      661 cgagcagtgg cgcaccgcgc ggctccagct cgtggcgacc gtcttcctgc tcgtcggcct
      721 gtcgtcgccg ctccttgccc ggttcacgcc ggagatcctc aaggccgtcg ccagcggcca
      781 gttccagatc atgctgccga cgccgacggc ggccgacgcc tacgaccagc tggccaagaa
      841 cctcggccag ttcggggcgt tgatcgcggt gctgctggcg atgggctcgg tcgcgaccga
      901 gaaggagcgc ggcaccgcgg cgctgatcct gaccaagccg gccagccgcg gcgcgtacct
      961 cgcggcgaag ctcgtcgcga tcgccttcac gctcggggtc gccacggcga tcgcggcggc
     1021 cggggcctgg ttctacacgc tggtcctgtt cgagccgctc gacgtcgtcg ggttcacggc
     1081 cgcggcactg ctccagtggc tggcgctcgt ggccttcgcc gcgatcacgt tcctcggcag
     1141 cacgctgacc cgatccgcgc tggccgccgc cggcctcggc atcgccgcgt tcatcgtgct
     1201 ggggatcctc agcatcgtgc ccgcgatcgg gacctacctg ccgacgggcc tcggcgcgcc
     1261 ggcgcgggcc ctcgcgctcg ggcagccggg cgtcgacgtc ctcgggccga ccgtcgcggc
     1321 gatcgtgctg atcggcgccc tggccggcgt ctcctggctg gccttccgtc gccaggagct
     1381 ctgacccggc gtccgccccc gcggccggac gctcagatcg tgccctccgc caggaggacc
     1441 gcgacctcgc tgtcggtgta gccgagctcg gcgaggatct gggcggcgtg ctccccgagg
     1501 gcaggcggtg gtgtccggat cgtggcgggg gtcgccgcca gcttgaacgg gacgccgacc
     1561 tggcggatga cgccccaggc cggatgctcc tgctcgacga ccatgtcgag cgccacggcc
     1621 tccggcgagg cgaacgccgc gacgatgtcg ttgatcggcg cgcatgggat cgatgcggaa
     1681 tcgaggacgg ccagccactc cgcggcgccg agctcgcgca gccgggcggc gaggatcggg
     1741 cggagcgccg cacggttgac cacgcggtcg ccgttggtcg cgaaccgcgg gtccgccgcg
     1801 agctccggcc gcccgaggac ctcgcagagc cgcggccact ggcgttcgga gcccaccgcg
     1861 atcgcgatcg ggcggtcggc cgtctcgaac gtctcgtacg ggacgatgtt gggatgcgcg
     1921 ttccccagcc gttcgggcgc gcggccggtg acgaacgcgt tctgggcctg gttgacgagg
     1981 ccggcgagcg tggcgccgag gagcgagatg tcgatccgct ggccaccggt cggcgtggcg
     2041 aggccggtgt cggcgtcggg gccggcgtcg ttcgccgatg cggcaccgcc c
//
LOCUS       DATDDI010000151         2456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_564949, whole genome shotgun sequence.
ACCESSION   DATDDI010000151 DATDDI010000000
VERSION     DATDDI010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_564949"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..393
                     /locus_tag="VIU37_02170"
     CDS             <1..393
                     /locus_tag="VIU37_02170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012776.1"
                     /translation="SLKQFRFTSNINAVGRAYGGSTDTAANIGRSGKGEITFDALIGI
                     SATSKTDVHDVYNVAGAVATERRWRVKCSGSGSNAFTVDFRCRFRSVNVGEHEGERLY
                     AVNGVWVYDSTLGGRGQFTIANSVATIP"
     gene            390..779
                     /locus_tag="VIU37_02175"
     CDS             390..779
                     /locus_tag="VIU37_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012777.1"
                     /translation="MSRFADPTAKVRLDLGACQCPGAPHDADWADLRGELSSVEVAKF
                     AGMAGLADDGVAERLATFVLGWNLLGPNGEPWPPSAESLLALKLPTIQLFIEKLGEVV
                     DASVTLPKGSSVRSPASSPAKASLIPA"
     gene            800..1030
                     /locus_tag="VIU37_02180"
     CDS             800..1030
                     /locus_tag="VIU37_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012778.1"
                     /translation="MLALETGWTPDRIGNLAARFRSALHWLLYVRALVGPEGLPHIDI
                     PREASAETKADLLRTRVQVEQLRDVLFPKDDE"
     gene            1027..>2456
                     /locus_tag="VIU37_02185"
     CDS             1027..>2456
                     /locus_tag="VIU37_02185"
                     /inference="COORDINATES: protein motif:HMM:TIGR01760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEY6012779.1"
                     /translation="MSTHKLSILVEALGTGDVNRKLKGVDKTLNSIGARAHKGIGTAA
                     SNLVRLGEAAAVGVAGGLAYAVKQAGDFEASMNTIATIVDRSQLPQIGQEIRGIARET
                     GTGVDELSAAYYDLVSAGVKAADATSVLTNATHLAIGGLGTTTETVDLLTTAMNAYGL
                     TADGVTKATDMFAQAIADGKVKASEIAGTFSHVAALAKAFGVGIDQVAASYAFLTAQG
                     VDASSVTTEFARAIQDITKPTGKAAQAIKQLQKDYHLNFQKMLKEKGLVPTLEAMRVA
                     AEKAGIPFQQLFGRKEGFLFALQTTGPAFAGFQAELAKIKDSAGEANAQFAERQQGLN
                     FQLARLKALAVDAAITIGSTLLPKITPLVEKLNALISGHQGDIAKFGDEIASAFDKIA
                     AYADRIPWGAIGDGLKTAGFWAGKLFDVFTSLPPQAQATLVALAGLNKLSGGAISGIV
                     GELGKGLIKGVLGMNAGVVNIKAAVV"
BASE COUNT          415 a          869 c          818 g          354 t
ORIGIN      
        1 tcgctcaagc agttccggtt cacctcgaac atcaacgcgg tggggcgcgc ctacggcggc
       61 tccacggaca ccgcggcgaa catcgggcga tcgggcaagg gcgagatcac cttcgacgcc
      121 ctcatcggca tcagcgcgac ctcgaagacc gacgtccacg acgtctacaa cgtcgcgggc
      181 gcggtcgcga ccgagcggcg ctggcgggtc aagtgctcgg gctcgggctc caatgccttc
      241 acggtcgact tccggtgccg cttccggtcg gtgaacgtcg gcgagcacga gggtgagcgg
      301 ctctacgcgg tcaacggcgt ctgggtctac gactcgaccc tcggcgggcg cggccagttc
      361 accatcgcca acagcgtcgc gacgatccca tgagccggtt cgccgatccg accgcgaagg
      421 tccggctcga cctcggggcg tgccagtgtc caggcgcgcc ccacgacgcg gattgggccg
      481 acctccgcgg cgagctgtcc tcggtcgagg tggcgaagtt cgcgggcatg gcgggcctcg
      541 ccgatgacgg ggtcgcggag cggctcgcga ccttcgtcct cggctggaac ctgctcgggc
      601 ccaacggcga gccctggccg ccgtcggctg agtcgctcct ggccctcaag ctgccgacga
      661 tccagctgtt catcgagaag ctcggcgagg tggtcgacgc ctcggtgacg ctcccaaaag
      721 gctcgtccgt tcgctctccg gcctcgtcgc cggcgaaggc atccctcatc ccggcctaga
      781 ccccgaggcg tatgacgtga tgctggccct cgagactggc tggacgcccg accggatcgg
      841 gaacctcgcg gcgcgcttcc gttccgcgct gcactggctc ctgtacgttc gggcgctcgt
      901 cggtcccgag ggcctgccgc acatcgacat cccgcgcgag gcctcggccg aaaccaaggc
      961 cgacctgctg cggacccgcg tccaggtcga gcaactccgc gacgtcctgt tcccgaagga
     1021 cgacgagtga gcacccacaa gctctcgatc ctcgtcgagg ccctcggcac cggcgacgtc
     1081 aaccgcaagc tcaagggcgt cgacaagacg ctcaactcga tcggggcgcg ggcccacaag
     1141 ggcatcggga ctgcggccag caacctcgtt cgcttgggcg aggcggcggc ggtcggcgtc
     1201 gcgggcggcc tcgcctatgc ggtcaagcag gcgggcgact tcgaagcgtc gatgaacacg
     1261 atcgcgacga tcgtcgaccg cagccaactg ccccagatcg gtcaggagat ccgaggcatc
     1321 gcacgggaga cgggcactgg cgtcgacgag ctctcggccg cctactacga cctcgtgtcg
     1381 gcgggcgtca aggctgccga cgcgacgagc gtcctgacga acgcaacgca cctcgccatc
     1441 ggcggcctcg gcacgacgac cgagacggtc gacctgctca cgacggccat gaatgcctac
     1501 gggctcaccg ccgacggggt gacgaaggca accgacatgt tcgcgcaggc catcgccgac
     1561 ggcaaggtga aggccagcga gatcgccggc acgttcagcc acgtcgcggc cctcgccaag
     1621 gcgttcgggg tcggcatcga tcaggtcgcc gcgtcctatg ccttcctgac ggcacagggc
     1681 gtcgatgcgt cgtcggtcac gaccgagttt gcccgggcca tccaagacat cacgaagccg
     1741 accggcaagg ccgcgcaggc gatcaagcag ctccagaagg actaccacct caacttccag
     1801 aagatgctca aggagaaggg cctcgtcccg accctcgagg cgatgcgcgt cgccgccgag
     1861 aaggccggca tcccgttcca gcagctcttc ggccgcaaag agggcttcct cttcgccctc
     1921 cagacgacgg ggccagcgtt cgcgggcttc caggcggagc tcgcgaagat caaggacagc
     1981 gcgggtgagg ccaacgcgca gttcgccgaa cgccagcagg gcctcaactt ccagttggcg
     2041 cggctcaagg cgctggcagt cgatgcggcc attacgatcg gctcgaccct gctgccgaag
     2101 atcaccccgc tcgtcgagaa gctcaacgct ctcatctccg ggcaccaggg cgacatcgcg
     2161 aagttcggcg acgagatcgc cagtgccttc gacaagatcg ccgcctacgc cgaccggatc
     2221 ccgtggggcg cgatcggcga cggcctcaag accgcgggct tctgggcggg caagctgttc
     2281 gacgtcttca ccagcctgcc gccgcaggcg caggccaccc tcgtcgcgct cgccgggctg
     2341 aataagctct ctggcggcgc catcagcggc atcgtcggcg agctcgggaa gggcctcatc
     2401 aagggcgtcc tcggcatgaa cgccggggtg gtgaacatca aggccgcggt cgtcaa
//
LOCUS       DATDDI010000152         2590 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_65643, whole genome shotgun sequence.
ACCESSION   DATDDI010000152 DATDDI010000000
VERSION     DATDDI010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65643"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..332
                     /locus_tag="VIU37_02190"
     CDS             <1..332
                     /locus_tag="VIU37_02190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012780.1"
                     /translation="MSPLVSLLKEHGYIEARSVHQRATFEAGVMFARAEGILPAPEPT
                     HAIRVAIDEALAAREAGEARVILFNLCGHGHFDLSAYERYLSGSLEDYEYPRERVEAA
                     LARLPQV"
     gene            351..593
                     /locus_tag="VIU37_02195"
     CDS             351..593
                     /locus_tag="VIU37_02195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012781.1"
                     /translation="MPKLACWSCGRQLYTVAPIEALFAEERRCPRCGAYLRDERRETE
                     RRQTIRRTNPPNDPGPPADVGERREGERRKGRRRAR"
     gene            639..1502
                     /locus_tag="VIU37_02200"
     CDS             639..1502
                     /locus_tag="VIU37_02200"
                     /inference="COORDINATES: protein motif:HMM:NF014234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HEY6012782.1"
                     /translation="MRIAFLGFGLIAGSIARAVRANESVAGWTMTAWSPSGRGPLEAV
                     EDGTIDRVAASPRDAIDGADLVVLAAPVPACLASMDEIAERGSGLSPSAVVTDVASTK
                     AALCTRADELGLRYVGGHPMAGLETAGYAAGRADLFTGRPWVIVPGIAAGPADVVRVE
                     SLARACGAETIEMDAGTHDRAVAGISHLPLLLSAALAEAVAGEGAAGWAVASRLSASG
                     WRDMTRLARGDPSMGAGIAATNAPALAGRLRDLRAVLDRWQAELDAPGGPDPAAIEDR
                     LRAARSRLDAT"
     gene            1499..2086
                     /locus_tag="VIU37_02205"
     CDS             1499..2086
                     /locus_tag="VIU37_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012783.1"
                     /translation="MTDEERVFVVPRAAVPDAAGWYGVRTAGLEAFVEGVERDGRYEP
                     RPAMEQDPSFKQIIPYLVLRDGSRYFLMRRTTAGGDPRLHGRYSIGVGGHLNPGDGGL
                     LGGLRREWDEELVAGFVPDFRLVALLNDDTTPVGAVHLGAIYLADAAGRPVAIRETDK
                     LSGDFAEADAVNEVRDRLETWSALVFDFLEGAVPR"
     gene            2118..>2590
                     /locus_tag="VIU37_02210"
     CDS             2118..>2590
                     /locus_tag="VIU37_02210"
                     /inference="COORDINATES: protein motif:HMM:NF012783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEY6012784.1"
                     /translation="MTRHLARRPSRQSIVLALFGLLLLATGGRGAGREVVVLPTTGIV
                     DQVMARYLADGIARAEREDAAAVVIKLNTPGGDLFSTNDIVGTLLEAKVPVIVWVAPA
                     GGFAASAGTFITLASNIALMAPGTSIGAASPVGGQGETITGTEGDKIRNDAIAKIT"
BASE COUNT          334 a          925 c          977 g          354 t
ORIGIN      
        1 gcatgtcgcc cctggtcagc ctgctcaagg aacacggcta catcgaagcc cggagcgtcc
       61 accagcgggc gacgttcgag gccggcgtga tgttcgcgcg agccgagggg atcctgccgg
      121 cgcccgagcc gacccatgcg atccgcgtcg cgatcgacga ggcgctcgcg gcgcgggagg
      181 ccggtgaggc gagggtcatc ctgttcaacc tgtgcgggca cggccacttc gacctgtccg
      241 cctacgagcg gtacctgagc gggagcctcg aggactacga gtacccgcgc gagcgcgtcg
      301 aagccgcgct ggcccggttg ccgcaggtct agtcggagcg gcacgcgcgg atgcccaagc
      361 ttgcctgctg gtcctgtggc cggcagctct acaccgtcgc gccgatcgag gcgttgttcg
      421 ccgaggagcg acgctgcccg cgctgcggcg cctacctccg cgacgagcga cgcgagaccg
      481 agcgacggca gacgatccgg cggaccaacc cgccgaacga ccctggtccg ccggcggacg
      541 ttggcgagcg tcgcgagggt gaacggcgga aaggccggcg ccgggcgcgc tgacccgtgc
      601 ggtacacggc tgccggggcg gctgcgatac tcgcgggcat gcgcatcgcg ttcctcggct
      661 tcgggttgat cgccggatcg atcgcacgcg ccgtccgggc gaacgaatcg gtcgcgggat
      721 ggacgatgac cgcctggtcg ccgtccggcc gtggcccgct cgaggcggtc gaggacggga
      781 cgatcgatcg cgtcgccgcc agcccgcggg acgcgatcga tggcgcggac ctcgtcgtgc
      841 tggcggcccc ggtcccggcc tgccttgcct cgatggacga gatcgccgag cgggggagcg
      901 ggctgtcgcc gtctgccgtc gtgaccgacg tcgccagcac caaggcagca ctgtgcaccc
      961 gggcggatga gctgggcctc cgctacgtcg gtgggcatcc gatggccggc ctcgagacgg
     1021 ccggctacgc cgcggggcgc gcggacctgt tcaccggccg cccctgggtg atcgtgcccg
     1081 gcatcgcggc cgggccggcc gacgtggtcc gggtcgaatc gctggcccgg gcctgcggcg
     1141 ccgagacgat cgagatggac gccgggaccc acgaccgggc ggtggccggg atcagccacc
     1201 tgccgctgct gctctcggcg gcgctggccg aggcggtcgc cggagaaggt gcggcgggat
     1261 gggccgtggc ctcccggttg tcggcgagcg gctggcgcga catgacccgg ctggcccgcg
     1321 gggacccgtc gatgggtgca gggatcgccg ccacgaatgc gccggcgctg gccggccggt
     1381 tgcgtgacct ccgtgccgtg ctggaccgct ggcaggccga gctcgacgcg ccgggcggcc
     1441 cggatcccgc ggcgatcgag gaccgcctgc gcgccgcccg gtcgcgcctc gacgccacgt
     1501 gacggacgag gagcgggtct tcgtcgtccc gcgtgcggcc gtgccggacg ccgccggctg
     1561 gtacggggtg cggacggccg gcctggaggc gttcgtggag ggggtcgagc gtgacggacg
     1621 gtacgagccg cgtcccgcga tggagcagga cccgtccttc aagcagatca tcccgtacct
     1681 cgtcctgcgc gacgggtcgc gctacttcct catgcggcgg acgaccgccg gcggcgaccc
     1741 gcggctccac ggccggtatt ccatcggtgt cggcggtcac ctgaacccgg gcgacggcgg
     1801 gctgctcggc ggacttcgcc gcgagtggga cgaggagctc gtcgccgggt tcgtcccgga
     1861 cttccgcctg gtggcgctgc tcaacgacga cacgactccg gtgggcgccg tccacctcgg
     1921 cgcgatctac ctcgccgatg cggccgggcg gccggtcgcc atccgcgaga ccgacaagct
     1981 gtcgggcgac ttcgcggaag ccgacgcggt caacgaggtc cgcgaccgcc tggagacctg
     2041 gagcgccctc gtcttcgact tcctcgaagg cgccgtcccg cgctgagggt gcgatactcc
     2101 tcctggaggg cgctcccgtg acccgtcacc ttgctcgccg cccatcgcgc caatcgatcg
     2161 tcctcgccct gttcggcctg ctcctgctcg cgaccggtgg tcgtggcgcc ggccgggagg
     2221 tcgtggtcct gccgacgacc gggatcgtcg accaggtcat ggcccgctac ctggccgacg
     2281 ggatcgcccg cgccgagcga gaggacgcgg cggcggtcgt gatcaagctc aacacgccgg
     2341 gcggcgacct gttctcgacc aacgacatcg tcgggacgct gctcgaggcg aaggtgccgg
     2401 tcatcgtctg ggtcgccccg gccggcgggt tcgccgccag cgccgggacg ttcatcacgc
     2461 tcgcgtcgaa catcgcgctg atggcgcccg ggacgagcat cggcgccgct tcaccggtgg
     2521 gcggccaggg cgagaccatc accggcaccg agggcgacaa gatccgcaac gacgcgatcg
     2581 ccaagatcac
//
LOCUS       DATDDI010000153         1674 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_148795, whole genome shotgun sequence.
ACCESSION   DATDDI010000153 DATDDI010000000
VERSION     DATDDI010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148795"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VIU37_02215"
     CDS             <1..292
                     /locus_tag="VIU37_02215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012785.1"
                     /translation="GVARTPATAAPAEASGVAPGATDEATTSDVPEAAPAETPETAPA
                     AKPKRTTKKVAAAATAEPAPEPAPPAGEAAAPVAKAKRASRKAATPSEGVAS"
     gene            298..612
                     /locus_tag="VIU37_02220"
     CDS             298..612
                     /locus_tag="VIU37_02220"
                     /inference="COORDINATES: protein motif:HMM:NF016204.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEY6012786.1"
                     /translation="MTTTVAPRRVPSRSCVACRTVRPKRDLLRLVRATDGTVTVDPTG
                     RLAGRGAYVCRIDACLTKAITKGALSRALRTQLPADVRTSLVESATAYVTDAEGGSRG
                     QE"
     gene            599..>1674
                     /gene="infB"
                     /locus_tag="VIU37_02225"
     CDS             599..>1674
                     /gene="infB"
                     /locus_tag="VIU37_02225"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEY6012787.1"
                     /translation="MARSRSGTRGRRGPRKPPRRDGTFNPAGVQVLDPRERGAIELPG
                     TITVKELAELLGVNPADIIRELIKSGIFATINQLVDRDTASLVAGELGYEVAEAAQAA
                     GAAGPEGETDGQVAEAAKEVLFEEDDPSLLQPRAPIVTVMGHVDHGKTSLLDAIRTTE
                     VAAGERGGITQHIGASEVTRDGKRVVFLDTPGHEAFTAMRARGARVTDIAIIVVAADD
                     GVMPQTLEAISHAKAAKVPLIIALNKIDKPDADPTRVKTELTEAGIVIEEYGGDVPLV
                     PVSAKARTGLDELLDMVLLVADLQELKANPKRSAIGTIVEAELDKGRGAVATALVQTG
                     TLKIGDVIVVGETYGRVRALENDKG"
BASE COUNT          280 a          609 c          602 g          183 t
ORIGIN      
        1 cggcgtcgcg cgaacgccgg cgacggccgc gccggccgag gcatccggcg tggcgcccgg
       61 cgcgaccgac gaggccacga catccgacgt gccggaggcg gccccggccg agacgccaga
      121 gaccgcgccg gccgccaagc cgaagcggac gacgaagaag gttgctgccg ccgccacggc
      181 cgagcccgca cccgaaccgg caccgccggc cggggaggcc gccgcgccgg tggccaaggc
      241 gaagcgcgcg agccggaagg ccgccacgcc atccgaaggg gtggcatcgt aggccgggtg
      301 acaacgaccg tcgctccccg gcgcgtcccg agccggtcct gcgttgcctg tcgcaccgtt
      361 cggccgaagc gggacctcct gcggcttgtc cgcgcgaccg acgggacggt gaccgtcgat
      421 ccgaccgggc gactggccgg tcgcggcgcc tacgtgtgcc gcatcgacgc ctgcctgacc
      481 aaagccatca ccaagggtgc cctgagccgg gcactccgaa cccagctccc ggccgacgtt
      541 cgaacgtcgc tcgtcgagag cgccaccgcg tacgtgactg acgctgaagg aggatctcgt
      601 ggccaggagt aggagcggca ctcgcggccg gcgcggtccg cgcaagccgc cgcgccggga
      661 cgggacgttc aacccagccg gcgtgcaggt cctcgacccg cgcgaacgcg gggcgatcga
      721 gctgcccggc acgatcaccg tcaaggagct tgccgagctg ctcggcgtca acccggcgga
      781 catcattcgc gagctgatca agagcggcat cttcgccacg atcaaccagc tcgtcgaccg
      841 cgacacggcc tcgctggtcg cgggcgagct cggctacgag gtggccgagg ccgcccaggc
      901 ggcaggcgcg gccggacccg agggcgagac ggacggccag gtcgccgagg ccgccaagga
      961 ggtcctgttc gaggaggacg atccgtcgct cctccagccg cgcgcgccga tcgtgaccgt
     1021 catgggccat gtcgaccacg gcaagaccag cctgctcgac gccatccgga ccaccgaggt
     1081 cgcggccggc gagcgcggcg ggatcaccca gcacatcggc gcgagcgagg tcacccgcga
     1141 cggcaagcgc gtcgtcttcc tcgacacgcc aggtcacgag gcgttcaccg cgatgcgtgc
     1201 ccgcggggcg cgcgtcacgg atatcgcgat catcgttgtc gcggcggacg acggggtgat
     1261 gccccagacg ctcgaggcga tcagccacgc caaggcggcc aaggtcccct tgatcatcgc
     1321 cctgaacaag atcgacaagc ccgatgccga cccgactcgg gtcaagacag agctgaccga
     1381 ggccggcatc gtcatcgagg agtacggcgg cgacgtgccg ctcgtcccgg tgtcggcgaa
     1441 ggcgcggacg ggcctcgacg agctgctgga catggtcctg ctggtcgccg acctccagga
     1501 gctcaaggcg aacccgaagc gctccgcgat cggcacgatc gtcgaggcgg agctcgacaa
     1561 gggccgcggc gcggtcgcga ccgccctcgt ccagacggga acgctcaaga tcggcgacgt
     1621 catcgtcgtc ggagagacgt acggccgcgt ccgcgcgctc gagaacgaca aggg
//
LOCUS       DATDDI010000154         1554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_252987, whole genome shotgun sequence.
ACCESSION   DATDDI010000154 DATDDI010000000
VERSION     DATDDI010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252987"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1170)
                     /locus_tag="VIU37_02230"
     CDS             complement(<1..1170)
                     /locus_tag="VIU37_02230"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEY6012788.1"
                     /translation="MARTPAQMLGLVRRRRPRALPPLPRLPLWRVRLIAILGVLGPGL
                     VSGFADNDAGGITTYSLAGAQWGYTLLWVILATQIVLFFTQEVGARLGLATGKGLIGL
                     IRERWGVRWATFAALAMLAANLGCIVAEFAGIASALGLFGIPPIVSAGVAAIVVIGLI
                     ALGNYSRIQYLFVGVGIFVSIAYVISAQLAGPDWGAALQNLAVPHLQSSPLYWLSVVC
                     TVGTTITPWGQAFIQSYVADKGLKPDDLAASRIDVFFGALLTNLIAAFIVIACAATLW
                     SHGATISSAADAARALRPLAGDGASLLFAVGLLGASFLGLGVVPMTSAYTTCEAFGWE
                     TGVDWKWREAPAFYGLLAFFIGFAAVFVMIPGLPLITVMFSAQVLNAILLPFILVF"
     gene            complement(1180..>1554)
                     /locus_tag="VIU37_02235"
     CDS             complement(1180..>1554)
                     /locus_tag="VIU37_02235"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY6012789.1"
                     /translation="LEKHLTAAQAIDRLRELEPDAETIYYVYVTDAEDHLVGVLSLRD
                     LIVAKADTPIGDVMRREPVAVGVLAGQEEVAELVAKYNFLAVPVVDDDNRLVGIVTVD
                     DAIDTVIPSGWRRRLPHVFTQR"
BASE COUNT          266 a          515 c          589 g          184 t
ORIGIN      
        1 gaagacgagg atgaacggca gcaggatcgc gttgaggacc tgggccgaga acatgaccgt
       61 gatgagcggc aggcccggga tcatgacgaa caccgcggcg aagccgatga agaacgccag
      121 caggccgtag aacgccggcg cctcgcgcca cttccagtcg acacccgtct cccagccgaa
      181 cgcctcgcag gtcgtgtagg cgctcgtcat cggcacgacg ccgaggccga ggaaggacgc
      241 cccgaggagg ccgacggcga acagcaggct cgccccgtcg ccggcgagcg ggcggagggc
      301 ccgggccgcg tccgcggcgc tcgagatcgt ggcgccatgg gaccacagcg tcgccgcgca
      361 ggcgatgacg atgaaggccg cgatgaggtt ggtcagcagc gcgccgaaga agacgtcgat
      421 ccggctggcg gccaggtcat cgggcttgag gcccttgtcc gcgacgtacg actggatgaa
      481 cgcctggccc cacggcgtga tcgtcgtgcc gaccgtgcag acgaccgaca gccagtacag
      541 cggcgagctc tggagatgcg gcacggcgag gttctggagg gccgcgcccc agtcgggccc
      601 ggccagctgg gcggagatga cgtaggcgat cgagacgaag atcccgaccc cgacgaagag
      661 atactggatc cggctgtagt tcccgagggc gatgaggcca atgacgacga tcgcggcgac
      721 gccggcgctc acgatcggcg ggatcccgaa caggccgagg gccgaggcga tgccggcgaa
      781 ctcggcgacg atgcagccga ggttggccgc cagcatcgcg agcgcggcga acgtcgccca
      841 gcggacgccc cagcgctcgc ggatcaggcc gatgaggccc ttgccggtcg cgagcccgag
      901 ccgggcgccc acctcctggg tgaagaacag cacgatctgg gtggccagga tgacccacag
      961 cagggtgtag ccccactggg cgccggcaag cgagtaggtc gtgatgccgc cggcgtcgtt
     1021 gtcggcgaag ccgctgacga gcccgggccc caggacgccc aggatcgcga tgagcctgac
     1081 gcgccacagg ggcagccgcg gcagcggcgg cagggcccgt ggccgccggc ggcgaacgag
     1141 gccgagcatc tgggccgggg tccgggccat cgccggccct cagcgctggg tgaagacgtg
     1201 cggcaggcgt cgccgccagc cggatgggat gaccgtgtcg atcgcgtcgt cgacggtcac
     1261 gatgccgacg agccggttgt cgtcgtcgac caccggcacg gccaggaagt tgtacttggc
     1321 gacgagctcg gcgacctcct cctggcccgc gaggacgccg accgccacgg gctcgcggcg
     1381 catgacgtcg ccgatcgggg tgtcggcctt ggcgacgatc aggtcgcgca gcgacaggac
     1441 cccgacgagg tggtcctcgg cgtcggtcac gtagacgtag tagatcgtct cggcgtcggg
     1501 ctcgagctcg cgcagccggt cgatcgcctg ggccgccgtc aggtgcttct cgag
//
LOCUS       DATDDI010000155         1941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_419373, whole genome shotgun sequence.
ACCESSION   DATDDI010000155 DATDDI010000000
VERSION     DATDDI010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419373"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            268..1716
                     /locus_tag="VIU37_02240"
     CDS             268..1716
                     /locus_tag="VIU37_02240"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY6012790.1"
                     /translation="MSRWALGVAAAVSVVLLAFAGAYGFHRDELYFIVAGRHPALGYV
                     DQPPLTPIVSAAAVALLGPTPVAARILPALMTGLAVLMCTDMARRFGGGHGAQLIAAV
                     TLAATGILAVGHLDSTTTYDVFAWTVILWLAVRLLAGGDRRLWLALGLAAGLGLENKY
                     IVAFLGVGLAVGIVFARRWDVLRSPWAWSAVGIALLLWLPNLAWQAANGWPQLDMARV
                     LAARAQAERGTFLVELFMINGTLLAFMPILGAVRLLVAGDTRPWRAIGWASVVVVALV
                     LWTSGKSYYMAGPIPALVAAAAVLVERWIARGRTVVRPVAFGTVAAVSVALMALITLP
                     VVPVVSLASSPVMDLYGEAGEQVGWPELAGQVRAVSDALPAVERDHAVILTANYGEAG
                     ALELLGDGLPPVYSGHNSYWDWGPPPDGSTVAIVVAGGGWRPPAVGGCSVNGRVDNGM
                     GVQNDEQGTSIYVCEHLPSAWAEAWPLLRHLD"
     gene            1727..>1941
                     /locus_tag="VIU37_02245"
     CDS             1727..>1941
                     /locus_tag="VIU37_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012791.1"
                     /translation="MADSRPGFQVVPVPRAQRQIGDWLVQAARRHTMHALLEVDVTDA
                     RRAIRAARARTGEPLSFTAYVVACLARA"
BASE COUNT          210 a          713 c          709 g          309 t
ORIGIN      
        1 cacgccctgg cgatcctgcc cgggctgacg cactacaaca tcggcgattc gccgctcctg
       61 gcgacggccg cgctgtcatt cctcgacgcg ccgggggcgg ccaccccggg ctagccattc
      121 aatcgccggg gcggcgtttc ctggcggaac cgaatccgcc ggcgcccggc gagttcagga
      181 gatgcggctc tggcggccgg ccacgccgcc acgggatcat cttcgaccgc gacgtcgcgg
      241 acgtcgcgga gcgagggagg tatccggatg tcgcgctggg cgctcggcgt tgcggccgcg
      301 gtgtcggtcg tgctgctggc tttcgcggga gcgtacggct tccaccgcga cgagctgtac
      361 ttcatcgtcg ccggccggca tccggcgctc ggctacgtgg accagccgcc gctgacgccg
      421 atcgtgtccg ctgccgcggt cgcgctcctc ggccccacgc cggtcgccgc ccggatcctg
      481 cccgccctga tgaccgggct cgccgtgctg atgtgcaccg acatggcgcg ccggttcggc
      541 ggcggtcacg gcgcccagct catcgcggcc gtcacgctcg cggcgacggg catcctcgcg
      601 gtcgggcacc tggactcgac cacgacgtac gacgtcttcg cgtggaccgt gatcctgtgg
      661 ctggcggtcc gcctcctggc gggcggggac cgccgcctgt ggctcgcgct cgggctggcg
      721 gcggggctgg ggctcgagaa caagtacatc gtcgcgttcc tcggcgtcgg cctggcggtc
      781 gggatcgtgt ttgcccggcg gtgggacgtc ctccgttcgc cgtgggcctg gtcggccgtc
      841 ggcattgcgc tgctgctctg gctcccgaac ctcgcctggc aggccgccaa cggctggccg
      901 cagctcgaca tggcgcgcgt cctggccgcc cgggcgcagg cagagcgagg cacgttcctc
      961 gtggagctgt tcatgatcaa cggaacgctg ctggcgttca tgccgatcct cggcgccgtc
     1021 cggctgctcg tcgccgggga cactcgcccg tggcgggcga tcggctgggc gtcggtcgtg
     1081 gtcgtcgcgc tggtcctgtg gacctcgggg aagagctact acatggccgg cccgatcccc
     1141 gccctcgtgg ccgccgcggc cgtgctcgtg gagcgctgga tcgcccgcgg tcgaacggtc
     1201 gtccgtcccg tcgcgttcgg caccgtggcg gcggtgtcgg tcgcgctgat ggccctcatc
     1261 accctgcccg tcgtgcccgt cgtctcgctg gcctcgtcac ccgtcatgga cctgtacggc
     1321 gaggcaggcg agcaggtggg ctggccggag ctggccgggc aggttcgcgc cgtcagcgac
     1381 gcgctgcccg ccgtcgaacg cgatcacgcg gtgatcctga ccgccaacta cggcgaggcc
     1441 ggtgcgctcg agctgctcgg cgacggcctg ccgccggtgt actccggcca caactcgtac
     1501 tgggactggg gtccaccgcc tgacggttcg acggtcgcca tcgtcgtcgc cggcggcggc
     1561 tggcggccgc cggccgtcgg cggctgcagc gtgaatggcc gcgtcgacaa cggaatgggc
     1621 gtccagaacg acgagcaagg cacctccatc tacgtttgcg agcacctgcc ctcggcctgg
     1681 gccgaggcgt ggccgctgct ccgccacctc gactaggagc agaccgatgg cggactcaag
     1741 accggggttc caggtcgtcc cggtgccgcg tgcccagcgc cagatcggcg actggctggt
     1801 ccaggccgcg cggcgccaca ccatgcacgc cctgctcgag gtcgacgtca ccgacgcccg
     1861 gcgcgcgatc cgtgcggcgc gcgcgcggac gggcgagccg ctgtcgttca cggcctacgt
     1921 cgtggcctgc ctcgcccggg c
//
LOCUS       DATDDI010000156         2589 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_377749, whole genome shotgun sequence.
ACCESSION   DATDDI010000156 DATDDI010000000
VERSION     DATDDI010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377749"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VIU37_02250"
     CDS             complement(<1..457)
                     /locus_tag="VIU37_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6012792.1"
                     /translation="MDETRPPARVPNPRTGGPLSRDDALAMLDRAAQLLATGDFQAAG
                     EHYARVVGFDDPTITAAALLGLGEVRYRLDDETAAVATWSAVLRLGETPSTYAAWRNV
                     AAARVRAGDLAGAIAAYREADKRAPREDKPEIANRLGWLTKETGDPRAAR"
     gene            485..1165
                     /locus_tag="VIU37_02255"
     CDS             485..1165
                     /locus_tag="VIU37_02255"
                     /inference="COORDINATES: protein motif:HMM:NF014626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HEY6012793.1"
                     /translation="MCGRFTQQRPASELAEIFGAEPLVDDPGGHYNVAPTDEALVVVQ
                     RDDRRAVTAYRWGLIPHWATDPRSGSRMFNARGETLTASPAFRDAFRRRRCLVPVDAF
                     YEWKREGGVRQPYLVSRTDGRPLALAGLWAGWHDPATDAVRRTFTIVTTSPNQALAGL
                     HDRMPVVVSEDAWARWLAPATDGLDELIGLLQPNEAVDLRIQAVSRLVNDVRQDGPAL
                     VVPLAATA"
     gene            complement(1175..1831)
                     /locus_tag="VIU37_02260"
     CDS             complement(1175..1831)
                     /locus_tag="VIU37_02260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012794.1"
                     /translation="MIVVIGSPVGWLRDEEVVPAGTPARAALAAAAAGSRVQFVGRTG
                     DDPAADALLLGLVRGGVGHVALLRDPARATTLVPDPSNDDLGPAPPDDEAPAAAVQPA
                     PAPPLDAGDVDLGLRYLTDYGVVVLAEPASPDVVRVVGDAATWSGARLVMVVGPGDEP
                     PLGLPPDAIVFEAPADDADGDFAALVGRFAAALDDGSDAADAFRSSIAEEGWTPAVAD
                     "
     gene            2185..>2589
                     /locus_tag="VIU37_02265"
     CDS             2185..>2589
                     /locus_tag="VIU37_02265"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HEY6012795.1"
                     /translation="MVEFAVIVPILLMLFVTIADFGRIFATNIQLEAATRDAAESAAN
                     QYVAAPPGGQPLSSPAPAGSTTYYGPLHAATARVVCSELRELPNTNFDSGTGTCPDMP
                     VVFVCVHDGQDTDCGTAASPGSGGIPAGCTDMA"
BASE COUNT          359 a          967 c          921 g          342 t
ORIGIN      
        1 gccgcgcggc ccggggatcg ccggtctcct tggtcagcca gccgaggcgg ttggcgatct
       61 ccggcttgtc ctcgcgcggc gcccgcttgt ccgcctcgcg ataggcggcg atggcgccgg
      121 ccagatcacc cgcccggacc cgcgcggccg cgacgttgcg ccacgctgcg taggtcgacg
      181 gcgtctcgcc gaggcgcagg accgccgacc aggtcgcgac cgccgccgtc tcgtcgtcga
      241 gccggtagcg gacctcgccg agcccgagga gcgcggccgc ggtgatcgtc ggatcgtcga
      301 acccgacgac ccgggcatag tgctcgccgg ccgcctggaa gtcgcccgtg gccagcagct
      361 gcgccgcgcg gtcgagcatc gccagcgcgt cgtcgcggct gaggggcccg ccggtacggg
      421 ggtttggcac gcgggccggc ggccgggtct cgtccatcgc gcggacgata ctagacttcg
      481 acccgtgtgc ggtcggttca cccagcagcg cccggcttcg gagctggccg agatcttcgg
      541 ggcggagccg ctcgtggacg atcccggcgg gcactacaac gtggcgccca cggacgaggc
      601 cctcgtcgtc gtccagcgcg acgaccgacg cgcggtcacc gcgtatcgct ggggcctgat
      661 cccccactgg gcgaccgacc ccaggtccgg ctcgcggatg ttcaacgccc ggggcgagac
      721 cctgaccgcc agcccggcct ttcgcgacgc gttccggcgc cgtcgctgtc tcgtgccggt
      781 ggatgccttc tatgagtgga aacgcgaagg tggcgtccgc cagccgtacc tcgtcagccg
      841 gaccgacggg cggccgctcg cgctggcggg gctgtgggcc ggctggcacg atcccgcgac
      901 cgacgcggtt cgccggacct tcacgatcgt gacgacctcg ccgaaccagg cgctcgcggg
      961 cctgcacgat cggatgcccg tggtcgtctc cgaggatgcc tgggcccgct ggctggcccc
     1021 ggccactgac gggctcgacg agctgatcgg actcctccag ccgaacgagg cggtcgacct
     1081 tcggatccag gccgtcagcc gcctggtcaa cgacgtccgg caggacggcc ccgcgctcgt
     1141 cgtgccgctg gccgccacgg cctgagcccg ccgctcagtc ggcgacggcc ggggtccagc
     1201 cctcctcggc gatcgacgag cgaaaggcgt cggccgcgtc cgagccgtcg tcgagtgcgg
     1261 ccgcgaagcg tccgaccagc gcggcgaagt cgccgtcggc gtcgtcggcg ggggcctcga
     1321 acacgatcgc gtccggcggc agccccagag gcggctcgtc acccggcccc acgaccatca
     1381 ccagccgcgc gccgctccac gtagccgcgt ccccgacgac gcgaacgacg tccggggagg
     1441 ccggctcggc caggacgacc acgccgtagt ccgtcaggta cctgaggccc aggtcgacat
     1501 cacccgcgtc gagcgggggt gccggcgcag gctgcacggc ggcggcgggc gcctcgtcgt
     1561 cgggcggcgc ggggccgagg tcgtcgttcg agggatcggg cacgagggtc gttgcgcggg
     1621 cgggatcccg caggagcgcc acgtgaccga ccccgccccg gacgagcccc agcagcagtg
     1681 cgtccgccgc ggggtcgtcg ccggtgcgtc cgacgaactg gacccgggag cctgccgcag
     1741 cggcggcgag cgccgcccgg gcgggggtgc ccgccggcac gacctcctcg tcgcgcagcc
     1801 agccgaccgg agacccgatg acgacgatca cgccgccagc gtactcgctc cgtggtgccg
     1861 gcaggcaact caaccgacgt ccttcgcgag cgttggacgc cataggtccc acgttggccc
     1921 gaacgaaatg accacgcggt cgttggaact gattgcggtc gcccacgctg gccaacgtca
     1981 ggcaacgctc taacccgggg atgatccgaa ttgcgactcc gtgcaatgcc gtgcgcaagg
     2041 tccgtgtgcc taagctcagc atcacgccgg ggtcctgcga gggcaagttc gattcagatg
     2101 cgggaagctc ccggcaatcc cgacgacacc accgcccgag attcggcgcg aggacaccgc
     2161 ggccgtcgcc aactcggcca gtcgatggtc gagttcgcgg tgatcgtccc catcctgctc
     2221 atgctcttcg tgacgatcgc ggacttcggc cggatcttcg ccacgaacat ccagttggag
     2281 gcggcaaccc gagacgcagc cgagagcgca gcgaaccagt acgtcgccgc gccgcccggc
     2341 ggccaacctc tgagcagccc ggccccagcc ggctcgacga cctactacgg tccgttgcac
     2401 gccgcgaccg cgcgcgtcgt ctgctccgag ttgcgtgagc tgccaaacac gaacttcgat
     2461 tcggggacgg gcacctgccc ggacatgcca gtggtgttcg tctgcgtcca cgacggccag
     2521 gacacggact gcggaaccgc cgcgtcgccg ggcagcggcg gcatcccggc cgggtgcacc
     2581 gacatggcc
//
LOCUS       DATDDI010000157         2652 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_44753, whole genome shotgun sequence.
ACCESSION   DATDDI010000157 DATDDI010000000
VERSION     DATDDI010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2652
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44753"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..604
                     /locus_tag="VIU37_02270"
     CDS             <1..604
                     /locus_tag="VIU37_02270"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6012796.1"
                     /translation="PAIGALERSFSADPAVVAAMAEAEIRGLHAQGVRAAVKHFPGLG
                     SASANTDFDDVDVTKTWSDAELDPYRALFPAGMPDAVMSGHIVNDAFDPGVPASLSPA
                     TIDGLLREQLGWAGVVVTDDLGAEAIAGRYRRDEAIALAIEAGNDLLLFANQSIYVPD
                     LAAQVIEAIAGHVESGRIAEARLDQSIERLDRLAVGTAVE"
     gene            645..1649
                     /locus_tag="VIU37_02275"
     CDS             645..1649
                     /locus_tag="VIU37_02275"
                     /inference="COORDINATES: protein motif:HMM:NF024676.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HEY6012797.1"
                     /translation="MRASRLVTVLLLLQSRGQLTAGELAAELEVSERTIHRDVDALSA
                     SGVPVYAERGPHGGIRLVDGYRTRLTGLTGDEAEALFLAGIPGPAAELGLGTVVAAAQ
                     LKVLASLPPELRTRASRLVERFHLDAGDWFRASQPVPHLAALSDAVWSSTRIAIDYER
                     SEGVVQRVIEPLGLVLKAGTWYVVASVDGQFRTYRVSRVVGVTPTPVRFERPDGFDLA
                     AYWAESTAAYERDVPRVDVEVRVRPDRVDRLRDAVGGAAFNAAEPMPDPDPDGWLRLR
                     LRLDWPGDAARTLLSAGRWVEVLGPPDIRARVASTARAVAAHYANDPAGEASEPTGLR
                     "
     gene            1672..2448
                     /locus_tag="VIU37_02280"
     CDS             1672..2448
                     /locus_tag="VIU37_02280"
                     /inference="COORDINATES: protein motif:HMM:NF042851.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA family kinase"
                     /protein_id="HEY6012798.1"
                     /translation="MLATRYVTPLREGGSLPGLVEADDDGLYVVKFRGAGQGPRALVA
                     EWLAGEIARAIGLTVPDLVAVEIDPNLGDAEPDEEIHDLVRASGGRNLGLDFLPGALA
                     FSRAVAGDGGTLTPDVAADIVWLDALVTNPDRTVRNPNLLVWHGRTWLIDHGAALYVH
                     YTWRDPDEHARRPFDQIRDHVLLPFASSIEAADARHAETIDRALLDGLVDALPDLWLP
                     ADPRAGDPAAQRAAYVRYLLRRLEPPRAFVEEAERARIAA"
     gene            2429..>2652
                     /locus_tag="VIU37_02285"
     CDS             2429..>2652
                     /locus_tag="VIU37_02285"
                     /inference="COORDINATES: protein motif:HMM:NF022681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HEY6012799.1"
                     /translation="MPGSPRSVFQYAIVRVVPRVERGECLNVGIVLLCRPRRYLGARI
                     LLDERRLAGLAPDLDPSTLRPHLEAIERIAA"
BASE COUNT          337 a          998 c          949 g          368 t
ORIGIN      
        1 cccggcgatc ggggcgctcg agcgcagctt ctcggccgac ccggcggtgg tcgccgccat
       61 ggccgaggcc gagatccgcg ggctccacgc gcagggcgtc cgggccgccg tcaagcactt
      121 ccccggtctc gggagcgcca gcgcaaacac cgacttcgac gatgtcgacg tcacgaagac
      181 ctggtccgac gcggaactgg atccgtatcg ggcgctgttc cccgccggga tgcccgacgc
      241 cgtgatgagc ggccacatcg tcaacgatgc attcgatccg ggcgtgccgg cgtcgttgtc
      301 gccggccacg atcgacggcc tccttcgcga gcagctcggc tgggccggcg tggtcgtgac
      361 cgacgacctc ggcgccgagg cgatcgccgg ccgctaccgg cgcgacgagg cgatcgcgct
      421 cgcgatcgag gccggcaacg acctgctcct gttcgccaac cagtcgatct acgtgcccga
      481 tctcgcggcc caggtcatcg aggcgatcgc cggccacgtc gagtcgggcc ggatcgcgga
      541 agcccgcctc gaccagtcga tcgagcgcct ggaccggctc gcggtcggca ccgccgtcga
      601 gtgaacatga cacttcctgg caggattcgg cgtaccgtgg agccatgcgt gcatcgcgcc
      661 tggtcacggt gctgctcctc ctgcagtccc gcggccagct gaccgccggc gagctcgccg
      721 ccgagctcga ggtctcggaa cggacgatcc accgcgacgt cgacgcgctc agcgcgtcgg
      781 gcgtgccggt ctacgccgaa cgcgggcccc acggcgggat ccgcctggtg gacggctacc
      841 ggacgaggtt gacgggcctg accggcgacg aagccgaagc cctcttcctg gccgggatcc
      901 cgggccccgc ggcggagctg gggcttggca cggtcgtggc cgccgcccag ctcaaggtgc
      961 tcgcctcgct gccgccggag cttcggacgc gcgcgtcccg cctggtcgag cggttccatc
     1021 tcgacgccgg ggactggttc cgggcgagcc agccggttcc ccatctggcc gccctgtcgg
     1081 acgcggtctg gagctcgacc cggatcgcca tcgactacga gcgctcggaa ggcgtcgtcc
     1141 agcgcgtcat cgagccgctc gggctcgtgc tgaaggcagg gacctggtac gtggtcgcgt
     1201 cggtggacgg ccagttccga acgtatcggg tgtcgcgcgt cgtcggcgtc acgcccacgc
     1261 cggtgcggtt cgaacgcccg gacgggttcg acctggccgc ctactgggcc gaatcgaccg
     1321 ccgcctacga gcgcgacgtc ccgcgggtcg acgtcgaggt ccgcgtccgg ccggaccggg
     1381 tcgaccggct ccgggacgcg gtcggcggtg cggcgttcaa cgcggccgag ccgatgcccg
     1441 atccggaccc agacggctgg ctccggctcc ggctgcggct cgactggccc ggcgacgccg
     1501 cgcgcacgct gctgagcgcc gggcgctggg tggaggtgct cgggccgccc gacatccgcg
     1561 ctcgcgtcgc ctccacggcg cgggcggtcg cggcgcacta cgccaacgac ccggccggcg
     1621 aggcgtcgga gcccaccgga ctccgctagg ctctgcgcga ccatgcgaac ggtgctcgcg
     1681 acccgctacg tcacgccgct gcgcgaaggc ggctcgctgc ccggcctcgt cgaggccgac
     1741 gacgacggcc tgtacgtcgt caagttccgc ggcgccggcc aggggccgcg tgcgctcgtg
     1801 gccgagtggc tggccggcga gatcgcccga gccatcggcc tgaccgtgcc agatctcgtc
     1861 gcggtcgaga tcgacccgaa cctcggcgat gccgagcccg acgaggagat ccacgacctc
     1921 gtccgggcca gcggcggacg caatctcggg ctcgatttcc tgccgggcgc gctggccttc
     1981 agccgggcgg tggcgggcga cggcgggacg ctgacgccgg acgtcgccgc ggacatcgtc
     2041 tggctcgacg cactcgtcac gaaccccgac cggacggtcc ggaacccgaa cctcctggtc
     2101 tggcacggac gcacgtggct gatcgatcac ggcgccgccc tgtacgtcca ctacacctgg
     2161 cgcgatccgg acgaacatgc ccgccggccg ttcgaccaga tccgcgacca cgtcctgcta
     2221 ccgttcgcga gctcgatcga ggcggccgac gcgcgacacg cggagacgat cgaccgcgcg
     2281 ctcctcgacg gcctcgtcga cgcgctcccc gacctgtggc tgccagccga cccgcgcgcc
     2341 ggcgaccccg ccgcgcagcg ggctgcctac gtgcgctacc tgctccggcg gctcgagccg
     2401 ccgcgggcgt tcgtggagga ggccgagcgt gcccggatcg ccgcgtagcg tcttccagta
     2461 cgcgatcgtg cgggtggtgc cacgcgtcga gcgcggcgag tgcctcaacg tcgggatcgt
     2521 cctgctgtgc cggccgcgac gctatctggg cgcgcggatc ctgctcgacg agcgccgcct
     2581 ggccggtctc gccccggacc tcgatccgtc gaccctgcgt ccccatctcg aggcgatcga
     2641 gcggatcgcg gc
//
LOCUS       DATDDI010000158         1504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_190542, whole genome shotgun sequence.
ACCESSION   DATDDI010000158 DATDDI010000000
VERSION     DATDDI010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190542"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1008)
                     /locus_tag="VIU37_02290"
     CDS             complement(<1..1008)
                     /locus_tag="VIU37_02290"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6012800.1"
                     /translation="MTDVLDRVKTYQQFIGGQWVDSASGATLDVENPADGKVIAKVPA
                     SSAEDVDRAVEAAATAFETWQHSTPQERSLALLKLADGLEARADEIGRLESRNAGKPV
                     TAAIDEVPVTVDNLRFFAGAARVMEGKAANEYMAGHTSMIRREPVGVVASIAPWNYPI
                     MMAGWKIGPALAAGNAVVLKPSARTPLTALVLAEVASEILPPGVLNVITGTGAAIGDP
                     LVAHPKVGMISVTGDTETGKHIARTAAEKVKRLHLELGGKAPVIVFDDADLEAVVEHI
                     KLYGYWNSGQDCTAACRVIAGPKIYDRFVADLAGAVKTIKWGDPAEGDDIEMGSLIAG
                     VQ"
     gene            complement(1120..>1504)
                     /locus_tag="VIU37_02295"
     CDS             complement(1120..>1504)
                     /locus_tag="VIU37_02295"
                     /inference="COORDINATES: protein motif:HMM:NF018434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HEY6012801.1"
                     /translation="TGEGFLPQPTILPQVDLVITHGGNNTVTEAFHHGKPMIVLPLFW
                     DQVDNAQRIDETGFGRRLATYDFRDDELTDAIDELLADAALGRRLAAISARLRANPGT
                     IRAADLIERVARTGKPVARTGESVA"
BASE COUNT          195 a          506 c          545 g          258 t
ORIGIN      
        1 ctgcacgccg gcgatcagcg agcccatctc gatgtcgtca ccctcggcgg ggtcgcccca
       61 cttgatcgtc ttgacggcac cagcgaggtc ggccacgaac cggtcgtaga tcttgggccc
      121 ggcgatgacg cggcaggccg cggtgcaatc ctggccactg ttccagtagc cgtacagctt
      181 gatgtgctcg accacggcct ccaggtcggc gtcgtcgaag acgatgaccg gggccttgcc
      241 gccgagctcg aggtggagcc gcttgacctt ctcggccgcg gtccgggcga tgtgcttgcc
      301 ggtctcggtg tcgccggtca ccgagatcat cccgaccttg ggatgggcga cgagcgggtc
      361 gccgatcgcc gcgccggtcc cggtgatgac gttgagcacg cctggcggga ggatctccga
      421 cgcgacctcg gcgaggacca gggcggtcag cggcgtccgg gcggacggct tgaggacgac
      481 cgcgtttccg gccgccaggg ccggtccgat cttccagccg gccatcatga tcgggtagtt
      541 ccacggcgcg atcgacgcca cgacgccgac cggctcgcgc cggatcatcg aggtgtgtcc
      601 ggccatgtac tcgttggccg ccttgccctc catgacccgg gcggcgccgg cgaagaagcg
      661 caggttgtcg accgtcaccg ggacctcgtc gatcgccgcc gtgaccggct tgccggcgtt
      721 cctggactcg agccggccga tctcgtcggc gcgtgcctcg aggccgtcgg ccagcttgag
      781 gagcgccagg ctgcgctctt gcggcgtgct gtgctgccag gtctcgaagg cggtcgcggc
      841 ggcctccacg gctcggtcga catcctcggc ggacgacgcc gggaccttgg cgatgacctt
      901 gccgtcggcc gggttctcga cgtcgagagt cgcgcctgac gccgagtcga cccactggcc
      961 gccgatgaac tgctggtacg tcttgacgcg atcgaggacg tcggtcacgg ggagccctcc
     1021 ttgatgtcgg ccggaagcca gtggagtgtc gggccatcgt acgccgggac gaaagggcgt
     1081 ttcgccctgt ggtgagccgg gtcgggaccc tgccgggtcc tacgcgacgg actcgccggt
     1141 ccgcgcgacg ggtttgccgg tccgcgctac gcgctcgatc aggtcggctg cgcggatcgt
     1201 tcccgggttc gcccgcaacc gggcggagat cgccgccagt cggcgcccga gcgcggcgtc
     1261 ggcaaggagt tcgtcgatcg cgtcggtcag ctcgtcgtcg cggaagtcgt aggtcgccag
     1321 gcggcgcccg aacccggtct cgtcgatgcg ttgtgcgttg tccacctggt cccagaagag
     1381 tggcagcacg atcatcggct tgccgtggtg gaacgcctcg gtgacggtgt tgttgccgcc
     1441 gtgcgtaatg accaggtcca cctgcggcag gatcgtgggc tgcgggagaa acccttcgcc
     1501 ggtc
//
LOCUS       DATDDI010000159         1554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_481949, whole genome shotgun sequence.
ACCESSION   DATDDI010000159 DATDDI010000000
VERSION     DATDDI010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481949"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..395)
                     /locus_tag="VIU37_02300"
     CDS             complement(24..395)
                     /locus_tag="VIU37_02300"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY6012802.1"
                     /translation="MSRARSTSLDPDVRLLAALADPTRLAIVRQLASETETCACDFTS
                     CCEVGQPTVSHHLRVLREAGVVSAERRGQWIFYRLEPSASERLAVLARGLVPGGLIPV
                     GELLAGRATPAAKAAMTRADA"
     gene            497..730
                     /locus_tag="VIU37_02305"
     CDS             497..730
                     /locus_tag="VIU37_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012803.1"
                     /translation="MDDRSTIAWMIMGGPRYDEHSQAELDHLRALNEQHLEYQRREST
                     GRLTRLVSFLDRWTARPAAALTSTACTTDSCAA"
     gene            745..>1554
                     /gene="arsM"
                     /locus_tag="VIU37_02310"
     CDS             745..>1554
                     /gene="arsM"
                     /locus_tag="VIU37_02310"
                     /inference="COORDINATES: protein motif:HMM:NF008823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite methyltransferase"
                     /protein_id="HEY6012804.1"
                     /translation="MTPTEPLAIDPIVDDVRARYAEAARAVLDRAPEPSEASASCCST
                     SGQEIFGSIGYDELDRASLPEAAVLASLGCGNPTAVAELKPGETVLDLGSGGGIDVLL
                     SARRVGPTGFAYGLDMTDEMLELARRNAAEAGATNVEFLKGRIEAIPLPDASVDVVIS
                     NCVINLSTDKAAVLAEIARVLRPGGRMGVSDVVADDTLSPAERASRGSFAGCIAGALS
                     FAEYRAGLDAVGLVDVELTPTNAAADGLHSAIIRATKPAGWTAASIRPVSLP"
BASE COUNT          238 a          578 c          532 g          206 t
ORIGIN      
        1 agggtccgcg cggtcgcagc ggctcaggcg tcggcgcgcg tcatcgccgc cttcgcggcc
       61 ggcgtggcgc ggccggcgag cagctcgccg accgggatca gcccgcccgg cacgagcccc
      121 ctggcgagga ccgcgagccg ctccgaggcg gacggctcga gccggtagaa gatccattgg
      181 ccgcgccgct cggcgctgac gacgccggcc tcgcggagga cgcgcaggtg atgcgacacg
      241 gtcggctggc cgacctcgca gcaactcgtg aagtcgcagg cacaggtctc ggtctcgctc
      301 gccagctggc ggacgatggc gaggcgggtc ggatcggcga gggccgccag gaggcggacg
      361 tcggggtcga ggctggtgga acgggctctg ctcatggccg cagcatatcg ccaagattcg
      421 atattgacaa ctatcaattg agcgctatat tgacaaccat caatcaacca ccaccgcgac
      481 acggagcacg aacccgatgg acgaccgatc gacgatcgca tggatgatca tgggcgggcc
      541 tcgctacgat gagcacagcc aggccgagct cgaccacctc cgcgccctca acgagcagca
      601 tctcgagtac cagcgacgcg agtccacggg tcgcctgact cgtctcgtgt cgttcctgga
      661 tcgctggacg gcgcggccgg ccgcggccct gacctccacc gcctgcacta ccgacagctg
      721 cgccgcctga gcgtgaggac cccgatgacc ccgaccgaac ccctcgccat cgatccgatc
      781 gtcgacgacg tccgcgcccg gtacgccgaa gccgctcgcg cggtcctcga ccgcgccccg
      841 gagccgtccg aggcgtccgc cagctgctgc tcgacgtccg gccaggagat cttcggctcg
      901 atcgggtacg acgagctcga ccgggcgtcg ctgccggaag ccgccgtcct cgcgagcctg
      961 ggctgcggca acccgaccgc ggtcgccgag ctcaagccgg gcgagaccgt gctcgacctc
     1021 ggatccggcg gcgggatcga cgtcctgctc tcggcgcgcc gggtcggtcc gaccggcttc
     1081 gcctacgggc tggacatgac cgacgagatg ctcgagttgg cgcggcgcaa cgccgcggag
     1141 gccggcgcca ccaatgtcga attcctcaag ggccggatcg aggccatccc gctcccggac
     1201 gcctcggtcg acgtcgtcat cagcaactgc gtgatcaacc tgtcgaccga caaggccgcg
     1261 gtcctggccg agatcgcccg cgtcctccgg ccgggcggcc ggatgggcgt cagcgatgtc
     1321 gtcgccgacg acacgctgag cccggccgaa cgggccagtc gcggcagctt cgccggttgc
     1381 atcgccggcg cactctcgtt cgccgagtac cgcgccggcc tcgacgcggt cgggctggtc
     1441 gacgtcgagc tgacgcccac gaacgccgcc gccgacggcc tgcacagcgc gatcatccgg
     1501 gcgaccaagc cggccggctg gaccgcggcc tcgatccgtc cggtcagcct cccc
//
LOCUS       DATDDI010000160         3994 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_294577, whole genome shotgun sequence.
ACCESSION   DATDDI010000160 DATDDI010000000
VERSION     DATDDI010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3994
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294577"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1190)
                     /gene="xylA"
                     /locus_tag="VIU37_02315"
     CDS             complement(<1..1190)
                     /gene="xylA"
                     /locus_tag="VIU37_02315"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR02630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0009045 - xylose isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA];
                     GO_process: GO:0042732 - D-xylose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HEY6012805.1"
                     /translation="MEEGFFSEVTEPIRFGGLDSTDPLSFKVYQPDRLVMGKRMEDHL
                     RIGVCLWHSFAWDGRDMFGVGTLDRPWLDPAADPMPAARQKMAVAFEFIEKLGTPYYC
                     FHDRDVAPEGASFAEFRDNLDALTDDALGYQERTGATLLWGTANLFTHPRYQGGAATN
                     PDPEVFAYAAAQVKHMLEVTKRLGGTNYVLWGGREGYDTLLNTDLRREGAQLARFLHL
                     VAEHKHRIGFEGTLLIEPKPMEPTKHQYDFDSATIHGFLVRNGLEDEYRLNIEANHAT
                     LAGHSFHHEVAYAVANGMLGSIDANRGDPQNGWDTDQFPNDVAEITMAMYHILKAGGF
                     TTGGNNFDAKVRRQSIDAADLFYAHIGGVDTVARGLLNAAAMIERGELARVVTDRYAG
                     WQREP"
     gene            1370..1807
                     /locus_tag="VIU37_02320"
     CDS             1370..1807
                     /locus_tag="VIU37_02320"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY6012806.1"
                     /translation="MTDTLVSTDPLRAQLLALLEGHDARMTFDEAVASFPAEAINALP
                     PNVTYTPWHLLEHLRITQWDILDYIVNRDYVEMRWPDDYWPAPDATATPEQFAATIEG
                     FRADNAALRAIVADPATDLLAVIPNTPGHTILREARVVGDHNS"
     gene            complement(1925..>3994)
                     /locus_tag="VIU37_02325"
     CDS             complement(1925..>3994)
                     /locus_tag="VIU37_02325"
                     /inference="COORDINATES: protein motif:HMM:NF025038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6012807.1"
                     /translation="VELKGAIPTAFESDAYRRRKEAIEAEIEGRHSAGLAALEKEAQS
                     AGVALVRTPIGLGFAPTRDGEVLPPEEFQRLPESDQQRLRQVTSRLENDLQAMLHQLP
                     QWQRETRRRLRELDRDVVQTAVDHLVDELRHRFADLPSVVGYLDRVEQDVIDAAPEYL
                     AALAQAEAEPSGSKSPDGGLFRRYRVNVLVQHNHDAGAPIVIEDHPTYANLVGRTEYI
                     AQLGTLVTDYSLIRAGALHRANGGYLVLEADKVLLEPYAWDQLKRALRSGEVRVEPLA
                     QSLGLLTTASLDPEPIPLDVKVALIGDRRLYYLLCAYDHEFPELFKVAADFDDDLAWT
                     PANARLYAGLIATIARRESLRPFTAAAVGRTIESLARIAEDGTRLSTHMGRLADLMRE
                     SDHWAGLRGGSTVTRPDVQRAIDARLHRSSRVYERLQEVTRREIVRIDVGGTEVGQVN
                     ALSVLQLGEERFGHPSRVTATARVGRGEVVDIEREVELGGPIHSKGVLILSGFLGGRF
                     GSVPLALRASLVFEQSYGAVDGDSASLAELCALLSAIGGFPIRQDLAMTGSVDQRGLA
                     QAIGGVNEKIEGYFDTCAARGLSGSQGVIIPVTNVPHLMLASRVRRAVRARQFSVFAV
                     SSVDGALELLSELPAGKPDPAGAYPPESVNGRVQAGLSRLAEVARRFSAVAGDGSASR
                     NGAEPPG"
BASE COUNT          593 a         1363 c         1407 g          631 t
ORIGIN      
        1 ggttcgcgct gccatccggc gtagcggtcg gtgacgactc tcgcgagttc accgcgttcg
       61 atcatggcgg cggcgttgag gagaccgcga gccaccgtgt ccacgcctcc tatgtgggcg
      121 tagaagagat cggccgcgtc gatgctttgg cggcgcacct tggcgtcgaa attgttgccg
      181 ccggtggtga agccgcctgc tttgaggatg tggtacatgg ccatggtgat ctcggccacg
      241 tcgttcggga actggtcggt gtcccagccg ttctgcgggt cgccgcggtt ggcatcgatc
      301 gagccgagca tgccattcgc gaccgcgtag gcgacctcgt ggtggaacga gtggccggcc
      361 agcgtggcgt ggttggcctc gatgttcagg cggtactcgt cctcgaggcc gttgcggacc
      421 aggaagccgt ggatggtggc cgaatcgaag tcgtactggt gcttcgtggg ctccatcggc
      481 ttcggttcga tgagcagcgt cccctcgaag ccgatccggt gcttgtgctc ggcgacgagg
      541 tggaggaagc gggcgagctg cgcgccctcc cgccgcaggt ccgtgttcag gagcgtgtcg
      601 tacccctctc ggccgcccca caggacgtag ttcgtgcccc cgagccgctt ggtcacctcg
      661 agcatgtgct tgacctgggc cgccgcgtag gcgaacacct cgggatccgg attcgtcgcc
      721 gcgccgccct ggtaccgcgg atgggtgaac agattggccg tgccccacag gagcgtggct
      781 cccgtccgtt cctggtagcc gagcgcgtcg tcggtcaggg cgtcgaggtt gtcgcggaac
      841 tcggcgaacg aggcgccctc cggtgcgacg tcgcgatcgt ggaagcagta gtacggcgtg
      901 ccgagcttct cgatgaactc gaaggccacc gccatcttct ggcgggccgc cggcatcgga
      961 tctgcggccg gatcgagcca gggccggtcg agcgtcccca cgccgaacat gtcccgtccg
     1021 tcccaggcga acgagtgcca caggcacacg ccgatccgga ggtgatcctc catccgcttg
     1081 cccatgacca ggcgatcggg ctggtagacc ttgaacgaga gcggatccgt cgaatcgagc
     1141 ccgccgaagc ggatcggctc cgtcacctcg gagaagaacc cttcctccac gtccgatcct
     1201 ccttgcccgg ccggcgggcg gactgcgtca ggtcctgggc cgcatccgga atctagcatt
     1261 cgaagtttgt gcgagagtag cacaaatgcc gtcgtgcgcc gggcccgctg catcggcggc
     1321 gcgatgccgg acaatggcga tctgcactgc tcgcatcgcg aggaacgaca tgaccgacac
     1381 gctggtctca accgatccgc tgcgcgccca gctcctggcg ttgctcgagg ggcacgacgc
     1441 ccgcatgacg ttcgacgagg ccgtggcgtc gttcccggcg gaggcgatca acgcgttgcc
     1501 gcccaacgtc acgtacacgc cgtggcacct cctggagcac ctgcggatca cgcaatggga
     1561 catcctcgac tacatcgtca accgcgacta cgtggagatg cgctggcccg acgactactg
     1621 gccggcgccc gacgcgaccg ccacgcctga gcagttcgcg gcgacgatcg agggcttccg
     1681 ggccgacaac gccgcgctcc gggcgatcgt ggcggatccg gccacggatc tcctcgccgt
     1741 catcccgaac acgcccggcc acacgatcct gcgcgaggcg cgcgtcgtcg gggaccacaa
     1801 ctcgtaacac atcggcgagt tcgcggtcct ccgccaggtc atgggcacct ggccgcggga
     1861 tcgggccgag taggcgccgc cggcggcccg cgtcggcggc tcggcgacgg ccgggtccgc
     1921 gccctcagcc cggcggctcg gcgccgttgc gtgacgccga gccgtcgccg gcaacggcgg
     1981 agaatcggcg ggcgacctct gccagccggc tcaggccggc ctggacgcgg ccgttgacgc
     2041 tctcgggcgg gtaggccccg gccggatccg gcttaccggc gggcagctcg ctcaggagct
     2101 cgagggcccc gtccaccgat gagacggcga acacgctgaa ctgccgggct cgaaccgccc
     2161 gccggacccg cgaggccagc atgagatgcg ggacgttggt cacggggatg atcaccccct
     2221 ggctgccgct cagtccccga gccgcgcacg tgtcgaagta gccttcgatc ttctcgttga
     2281 ccccgccgat cgcctgggcg agcccgcgct ggtcgaccga accggtcatc gcgaggtctt
     2341 gccggatggg gaagccgccg atcgccgaga gcaaggcgca gagctcggcc aaggacgcgc
     2401 tgtcgccgtc gaccgccccg tacgactgct cgaacaccag gctggcgcgg agcgcgagcg
     2461 gtaccgatcc gaaccggccg ccgaggaaac cggacaggat cagcacgccc ttcgagtgga
     2521 tgggcccgcc gagctcgacc tcccgttcga tgtcgaccac ctcaccccgg ccgacccgag
     2581 ccgttgccgt cacccgggac ggatgtccga accgctcctc gcccagctgc agtaccgaca
     2641 gcgcgttgac ctgtccgacc tcggttccgc cgacgtcgat ccggacgatc tcccggcggg
     2701 tcacctcctg gagccgctcg tatacccggc tcgagcggtg gagccgggcg tcgatcgccc
     2761 gctggacgtc cggccgggtg accgtcgacc cgccgcgcag gccggcccag tgatcgctct
     2821 cgcgcatgag gtcggccagg cggcccatgt gggtggacag cctcgtccca tcctcggcga
     2881 tgcgggccag tgattcgatc gtgcgtccga cggcggccgc cgtgaacggt cgcagcgatt
     2941 cgcgccgggc gatggtcgcg atgagtccgg catacaggcg cgcattcgcg ggcgtccagg
     3001 cgagatcgtc atcgaagtcc gcggcgacct tgaacaactc cgggaactcg tggtcgtacg
     3061 cgcacaacag gtagtagagc cggcggtcgc cgatgagggc aaccttgacg tcgagcggga
     3121 tcggctccgg atcgagcgac gcggtcgtca gcaggccgag tgactgggcg agcggctcga
     3181 cccgtacctc cccgctgcgc agggcacgct tgagctgatc ccacgcgtac ggctcgagga
     3241 ggaccttgtc ggcctccagg acgagatagc cgccgttggc acggtggaga gcgccggccc
     3301 ggatcaggct gtagtcggtg acgagcgtcc cgagctgggc gatgtactcg gtccggccga
     3361 cgagattggc gtaggtcggg tggtcctcga tgacgatcgg ggcgccggcg tcatggttgt
     3421 gttggaccag gacgttgacg cgatagcgcc ggaacaggcc gccgtccggc gacttcgagc
     3481 cggacggttc ggcttcggcc tgtgcaagtg cggccaggta ctcgggggcg gcgtcgatga
     3541 cgtcttgttc gacgcgatcg aggtacccga cgacggacgg cagatcggcg aaccggtgac
     3601 gcagctcgtc gacgagatgg tcgacggccg tctgcacgac gtcccggtcc agctcgcgaa
     3661 gccggcgccg ggtctcgcgc tgccactgcg gcaactggtg gagcatggcc tgcaggtcgt
     3721 tctcgagccg gctggtcacc tggcgcagcc gctgctggtc ggattcgggc aggcgctgga
     3781 actcctccgg aggaaggacc tcgccgtcgc gggtcggggc aaacccgagg ccgatcgggg
     3841 tccgaacgag cgccacgccg gccgattgcg cctccttctc gagcgcggcc agcccggccg
     3901 aatggcgacc ttcgatctcc gcttcgatgg cctccttgcg tcggcggtag gcgtcgctct
     3961 cgaaggccgt cgggatggcg cccttgagct cgac
//
LOCUS       DATDDI010000161         1964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_669212, whole genome shotgun sequence.
ACCESSION   DATDDI010000161 DATDDI010000000
VERSION     DATDDI010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_669212"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..900
                     /locus_tag="VIU37_02330"
     CDS             <1..900
                     /locus_tag="VIU37_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012808.1"
                     /translation="RPVVATGDSVVVGAPIAQWLRDPRLDELTIPATATPRPGRRWTA
                     PSGARDGQAAGGEYVFGWRGRWRVATGDLSDPLEVPFAGIVRDVRPGSAITVRAAGRG
                     IRGVVVLGGPTRGRLQATPDGELRAGSLDIGSAGSILVVGSRVDAETLTRARAMGVRG
                     VIVTGLSSKERRDYLASEARQRSALHRLPPFAVLVLEGAVRRPLAGAVLTVLTSLVGH
                     EVAIVADPPMLVFDVPNLQVPAPPADLVRVRGGSLAGREGRFVEAIGPRRFAGGVRLE
                     AGLVRFPDGTVAAVPLGDLERFT"
     gene            999..1472
                     /gene="tsaE"
                     /locus_tag="VIU37_02335"
     CDS             999..1472
                     /gene="tsaE"
                     /locus_tag="VIU37_02335"
                     /inference="COORDINATES: protein motif:HMM:TIGR00150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEY6012809.1"
                     /translation="MPALTPLERHFVCPDPDATAALGRRLAAVAGPGDLICLWGELGA
                     GKTHLAKAFGAGLGVTDTIVSPSFILMAEYAGRLPLFHLDLFRLSTAADALGGGLIDD
                     RQALGVTLVEWPDRLADALPVERLDIVIDGAGDEPRSIVVRAGTPALRRYLEGLE"
     gene            1469..>1964
                     /gene="tsaB"
                     /locus_tag="VIU37_02340"
     CDS             1469..>1964
                     /gene="tsaB"
                     /locus_tag="VIU37_02340"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEY6012810.1"
                     /translation="MSHDGRRRAILAIDTATTQVIVASGSSDGEIDGLTTWAAGYRHG
                     ETLLPAIARFLGEQNLRRSRLTGIVVGTGPGAFTGLRVGIATAKGLAHGLGLPIAGVS
                     TAEAMLAAAAGDASAQADEAGDDGQPVLLLPAGPNDRVLVRHGQGARLLPGGTAPDLA
                     PGEWL"
BASE COUNT          209 a          732 c          761 g          262 t
ORIGIN      
        1 cggcccgtgg tcgcgacggg agactcggtc gtggtcgggg cgccgatcgc ccagtggctg
       61 cgggacccgc ggctcgacga gctcacgatc cccgcgaccg ccacgccgcg acccgggcgc
      121 cgctggaccg ccccgtccgg cgcacgcgac ggccaggccg ccggcggtga gtacgtgttc
      181 gggtggcggg gccgctggcg ggtggcgacc ggcgatctgt ccgacccgct cgaggtcccg
      241 ttcgccggga tcgtccgcga cgtccgcccg ggcagcgcga tcaccgtccg cgcggcgggt
      301 cgtggcatcc gcggcgtcgt ggtcctgggc gggccgaccc gcgggcgcct ccaggcgacg
      361 cccgatggcg agctgcgggc cgggtcgctc gacatcggca gtgcaggctc gatcctggtc
      421 gtcggatcgc gggtggacgc cgagacgctg acccgggccc gggccatggg cgtgcgcggc
      481 gtgatcgtga ccggcctgtc cagcaaggag cggcgcgact acctcgcgtc cgaggcacgc
      541 cagcggtcgg cgctccatcg gctgccgccg ttcgccgtcc tggtcctgga gggcgccgtt
      601 cgccgcccgc tcgccggggc cgtcctgacc gtgctcacca gccttgtcgg gcacgaggtg
      661 gcgatcgtgg ccgacccgcc gatgctcgtg ttcgacgtgc cgaacctcca ggtcccggcg
      721 ccgccggcgg acctggtgcg agtccgcggc ggctcgctgg ccgggcgcga ggggcgattc
      781 gtcgaggcca tcggcccgcg ccggttcgcg ggcggcgtcc gcctcgaggc cgggctggtc
      841 cgcttcccgg atggcacggt cgcggcggtg ccgctcggcg acctggaacg attcacctga
      901 tcctgggcac cccggccgcg cccggacgct cgcgagcgtc ggcgccgcac gacctccgac
      961 cggcgggccg tctcgccttc ggctacgctc ggggcaggat gcccgccctg acgccgctcg
     1021 aacgccactt cgtctgcccc gatcccgacg cgaccgccgc gctcgggcgc cggttggcgg
     1081 ccgttgccgg gccgggcgac ctgatctgcc tgtggggcga gctcggggcg ggcaagacgc
     1141 acctggccaa ggcgttcggg gcgggactcg gcgtgaccga cacgatcgtg tcacccagct
     1201 tcatcctgat ggccgagtac gccggccggc tgccgctctt ccacctcgac ctgttccggc
     1261 tgtcgaccgc cgccgacgcc ctgggcggcg gcctgatcga cgaccgccag gcgctcggcg
     1321 tcacgctggt ggagtggccc gaccgactgg ccgatgcgct gccggtcgaa cgactcgaca
     1381 tcgtgatcga cggcgccggc gacgagccca ggtcgatcgt ggtccgggcc gggacgccgg
     1441 ccctgcgccg ctatctcgag gggctcgaat gagccacgac ggcaggcggc gggcgatcct
     1501 cgcgatcgac accgccacca cccaggtgat cgtggccagc ggttcatccg atggcgagat
     1561 cgacgggctg acgacctggg ccgccggcta ccggcatggg gagacgctgc tgccggcgat
     1621 cgccaggttc ctcggcgagc agaacctgcg ccgctcgcga ctgacgggga tcgtggtcgg
     1681 cacgggcccc ggtgccttca ccgggttgcg ggtcgggatc gccacggcca agggcctggc
     1741 ccacgggctc gggttgccga tcgcgggggt ctcgaccgcc gaggcgatgc tggcggcggc
     1801 ggccggcgac gcgtcggccc aggccgacga ggccggtgac gatgggcagc ccgtcctcct
     1861 gctcccggcc gggccgaacg accgggtcct ggtccgtcac ggccagggcg cgcgcctgct
     1921 gccgggcggc acggctccgg acctggcgcc cggggagtgg ctgg
//
LOCUS       DATDDI010000162         4243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_65835, whole genome shotgun sequence.
ACCESSION   DATDDI010000162 DATDDI010000000
VERSION     DATDDI010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4243
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65835"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1701)
                     /locus_tag="VIU37_02345"
     CDS             complement(<1..1701)
                     /locus_tag="VIU37_02345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012811.1"
                     /translation="MAARSLPAADSHDLIRVHGARENNLKNISVEIPKRRLTVFTGVS
                     GSGKSSLVFDTIAAESRRLIDETYSTFIQGFMPTLPRPDVDLLDGLTTAILVDQERMG
                     ANPRSTLGTVTDANAMLRSLFSRLGKPYIGGPTAFSFNIPTMRASGVMTGPKGEKIIV
                     QDAIYLGGMCAECEGRGTISDLDLSVILDESKSLAEGAILVPGYTADGWLVATFIESG
                     FFDPRKPIRDYTEKERHDLLYKQTTKIKAKGINVSYDGLIPKLRKSMFGKDVDSLQPH
                     IRAFVERAAVFKTCPACDGTRLNEAARSSKVNGLGIADVCAMQVTDAAEWLRGIDDSG
                     VAPLVAALLHLSDSFVEIGLGYLSLDRPSGTLSGGEAQRTKMVRHLGSALTDVTYVFD
                     EPTIGLHPHDIQRMNKLLLELRDKGNTVLVVEHKPEMIAIADHVVDLGPGAGTAGGTI
                     CFEGTVAGLKASGTLTGRHLDQRTALKDSVRTPTGTLEIRGANAHNLRDVDVDIPLGV
                     LCVVTGVAGSGKSSLVHGSIPAGAGVVSIDQGPIRGSRRSNPATYTGLLDPIRTAFAR
                     A"
     gene            complement(1725..2174)
                     /locus_tag="VIU37_02350"
     CDS             complement(1725..2174)
                     /locus_tag="VIU37_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012812.1"
                     /translation="MTATKSTAAKTWTDEERAAMQESVRERKAASRRDPADERAEGER
                     DVLAKIADMPPADRAMAERIHELVTTTAPSLVPRTYYGMPAYAKDGKVICFFKPASKF
                     KVRYSTFEFQPDARVDDGEMWPVAFAVIELTARSEARITELVKRAIN"
     gene            complement(2294..3488)
                     /locus_tag="VIU37_02355"
                     /pseudo
     CDS             complement(2294..3488)
                     /locus_tag="VIU37_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020359689.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
     gene            complement(3598..>4243)
                     /gene="sufC"
                     /locus_tag="VIU37_02360"
     CDS             complement(3598..>4243)
                     /gene="sufC"
                     /locus_tag="VIU37_02360"
                     /inference="COORDINATES: protein motif:HMM:TIGR01978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEY6012813.1"
                     /translation="KRARLGLFLAFQYPISISGLSVASFIRSALNAKLQGIDKSADID
                     PTDPMRGGITMRDFRNKMREKMALLKMDEGIAARYVNEGFSGGEKKRLEMLQMAVLEP
                     EMAILDETDSGLDIDALRIVAEGVNAMLNPNLGVLLITHYQRLLNYITPDVVHVLAQG
                     RIVKSGGKDLALRLEDEGYGPVLREAGLSPDVPDEALLMPKEPGAELQPVEAAR"
BASE COUNT          601 a         1398 c         1523 g          721 t
ORIGIN      
        1 ggccctggcg aaggcggtgc ggatcggatc cagcaggccg gtgtacgtgg cggggttgct
       61 ccggcgcgag ccacggatcg gaccctggtc gatcgacacc acgcccgcgc cggccgggat
      121 ggacccgtgg acgagcgacg acttgccgga accggccact ccggtcacca cgcagagcac
      181 gccgagcggg atgtcgacgt cgacgtcccg caggttgtgc gcgttcgcgc cgcggatctc
      241 gagcgtgccg gtcggcgtcc ggaccgagtc cttgagcgcc gtccgctggt cgagatggcg
      301 gccggtcagc gtgccggatg ccttcagccc ggcgaccgtc ccctcgaagc agatggtccc
      361 accggccgtg cccgctcccg ggccgaggtc gacgacgtgg tcggcgatcg cgatcatctc
      421 gggcttgtgc tcgacgacca gcaccgtgtt gcccttgtcg cgcagctcga ggagcagctt
      481 gttcatccgc tggatgtcgt gcgggtgcag gccgatcgtg ggctcgtcga agacgtacgt
      541 gacgtcggtc agggcggagc cgaggtgccg caccatcttg gtccgctgcg cctcgccgcc
      601 ggacagcgtg cccgaggggc ggtcgagcga gagatagccc aggccgatct ccacgaacga
      661 gtcggacagg tggagcaggg cggcgacgag tggcgccacg ccgctgtcgt cgatgccgcg
      721 cagccactcg gccgcatcgg tgacctgcat ggcgcagacg tcggcgatgc cgaggccgtt
      781 gactttcgag gaccgcgccg cctcgttgag ccgggtgccg tcacacgcgg gacaggtctt
      841 gaacaccgcg gcccgctcga cgaacgcccg gatgtgcggc tgcagcgagt cgacgtcctt
      901 gccgaacatc gacttgcgga gcttcgggat cagcccgtcg tagctgacgt tgatgccctt
      961 ggccttgatc ttcgtcgtct gcttgtacag caggtcgtgg cgttccttct ccgtgtagtc
     1021 ccggatcggc ttcctcgggt cgaagaagcc tgactcgatg aaggtcgcca ccagccaccc
     1081 gtcggccgtg tagcccggaa ccaggatggc gccttcggcg agggacttcg actcgtcgag
     1141 gatcaccgac agatcgaggt cggagatcgt cccgcggccc tcgcactcgg cacacatccc
     1201 gccgaggtag atcgcgtcct ggacgatgat cttctcgccc ttcgggccgg tcatcacgcc
     1261 gctcgcccgc atggtcggga tgttgaacga gaacgcggtc ggcccgccga tgtagggctt
     1321 gccgaggcgg ctgaacaggc tgcgcagcat cgcgttggcg tcggtgaccg tgccgagcgt
     1381 cgagcgcggg ttcgccccca tccgttcctg gtcgaccagg atggcggtcg tcaacccgtc
     1441 gaggaggtcg acgtcgggcc ggggcagcgt cggcatgaag ccctggatga aggtcgaata
     1501 ggtctcgtcg atcagccggc gcgactccgc ggcgatcgtg tcgaacacga gcgagctctt
     1561 gcccgagccc gagacgccgg tgaacaccgt cagccggcgc ttcgggatct cgacgctgat
     1621 gttcttgagg ttgttctctc gcgcgccgtg gacgcggatc aggtcgtggc tgtcggcggc
     1681 cggcaacgag cgggcggcca tcggcgtgtc catggcgtcg gcgctcagtt gatggcccgc
     1741 ttcacgagct cggtgatcct cgcctccgag cgggcggtca gctcgatcac ggcgaacgcg
     1801 accggccaca tctcgccgtc gtccacccgg gcgtccggct ggaattcgaa ggtcgagtac
     1861 cggaccttga acttggaggc cggcttgaag aagcagatca ccttgccgtc cttggcatag
     1921 gccggcatcc cgtaataggt cctcggcacg agggacggcg cggtcgtcgt cacgagctcg
     1981 tggatgcgct cggccatggc ccggtcggcc gggggcatgt cggcgatctt ggcgagaacg
     2041 tcgcgttccc cttcggcgcg ttcatcggcc gggtcgcgac gcgaggccgc ctttcgttcc
     2101 cggacgctct cctgcattgc cgcccgttct tcgtcggtcc aggtcttcgc ggcggtgctc
     2161 ttcgttgcgg tcatggtcgc tcctcgcgtc gtgggtggaa ccgggcgatg cccatgccgg
     2221 tcatggtagg tgccgcccgc ggaccgacgc ttctcgattc ctgatcggtc cgtctccgcc
     2281 cgcgagcgcc gacctagacg tcgaagaccc gctggacctc cttgaggccg gcgaccaggg
     2341 cgtcgatgtc cccgcgtgtc gagtagacgt tgaacgaggc gcggggcggt cgcggcgagg
     2401 tccagccgct cgtggagcgg catcgtgcag tggtggcccg cgcggaccgc gacgccgaac
     2461 cggtcgagga cctgggcgac gtcgtgtggg tggacgtcgg gcaggttgaa cggcaccacg
     2521 ccgccacgca tcgacgggtc cagcggtccg tagagcgcga tgccgggcac ctctcgcggc
     2581 aggacgtcca gggcgtactc cacgagctcg cgctcgtgcg cgcggaccgc gtccatcccg
     2641 agatccatca ggtacgcggc ggccacgccc atgccgatcg aatcgccgac ggccggcgtc
     2701 cccgcctcga acttccaggg gatctcgttg aagtcagatc ggcgcaggtg gacctcgcgg
     2761 atcatctcgc cgcccgacag gaacggcggc atcgactcga gcagttcgcg gcgcgcccac
     2821 agcgcgccgg atcccatcgg cgccagcatc ttgtgaccgc tgaatgcgta gaagtcgcag
     2881 ccgagctcct ggacgtcgac cggcacgtgc ggcacggcct gcgcgccgtc gaccaggacg
     2941 agggccccgg ccgcgtgggc catctcggtc atctgtcgga ccgggttgat cgtcccgagc
     3001 gtgttcgaca cgtgggtgaa cgcgacgagc ttcggcttga gccggaggag cacctcgaag
     3061 acgtcgaggc ggaggatccc gtcgtcggtg atcgggatga actcgagatc cccgtccttc
     3121 tcctggacga ggatctgcca tgggacgagg ttggcgtggt gctccatctc ggtcagcacg
     3181 atcgcgtcgc cgcggccgat gttcttgcgg ccccacgaat acgacacgag gttgatcgcc
     3241 tcggtcgcgt tgcgggtgaa cacgatctcg tggctgtccg gggcgttgac gaagcgcgcg
     3301 acgcgggccc gggcctgctc gtacgcggcc gtcgcctgct cgccgatcgt gtagatcccg
     3361 cggtggacgt tggcgttgta gcgacggtag tagtcgtcca tcgcgtcgat gacgacctgc
     3421 ggcttctgcg acgacgacgc ggagtcgagg tagacgaagg ggtgaccgtt gatctgctgg
     3481 tcgaggatcg ggaagtcgcg gcggacgacg gccgggtcga acgcggggcg ggggcgcgcc
     3541 tcggccgcgg cgtcgaccga cggctcggac gtgatggcca cggctgtccc ggcccgccta
     3601 gcgggcggcc tccacgggct ggagctcggc tcccggctcc ttgggcatca gcagcgcctc
     3661 gtcggggacg tcgggcgaca ggccggcctc gcgcaggacc ggaccgtagc cctcgtcctc
     3721 gagacggagc gccaggtcct tgccgccact cttgacgatc cggccctggg ccaggacgtg
     3781 gacgacgtcc ggggtgatgt agttgagcag tcgctggtag tgggtgatca gcagcacccc
     3841 gaggttgggg ttgagcatcg cgttgacgcc ctcggcgacg atccgcagcg cgtcgatgtc
     3901 gaggcccgag tcggtctcgt cgaggatcgc catctccggc tcgaggacgg ccatctggag
     3961 catctcgagg cgcttcttct ccccgcccga gaacccctcg ttgacgtagc gggcggcgat
     4021 gccctcgtcc atcttgagca gcgccatctt ctcgcgcatc ttgttccgga agtcgcgcat
     4081 cgtgatcccg ccgcgcatcg ggtcggtggg gtcgatgtcg gcgctcttgt cgatcccctg
     4141 gagcttggcg ttgagggccg agcggatgaa gctcgcgacg ctcaggccgg agatcgagat
     4201 cgggtactgg aaggcgagga agagcccgag ccgggctcgc ttg
//
LOCUS       DATDDI010000163         1658 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_710909, whole genome shotgun sequence.
ACCESSION   DATDDI010000163 DATDDI010000000
VERSION     DATDDI010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710909"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..765)
                     /locus_tag="VIU37_02365"
     CDS             complement(<1..765)
                     /locus_tag="VIU37_02365"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEY6012814.1"
                     /translation="MAGGRSGGSAGGPVTFGGLLRGSLLYTIGSVVPRVGIFLLLPVY
                     TRGMGPAEFGIFSLMLSLAGLLTILYRLGQDGALLRFHFDLASKRAAALYWTLTAITV
                     VAGIAFSLVLVTLAGPVFAAIFAGIDLWPYGWLAAGIALVTALQFVPTTWFRATEHPE
                     RVVGFGLATFVVGAGVTLALVLVLHLGAVGGLLGQLAAGLVAVGVTIALLSRRRPARI
                     DPELAREGLRFGLPLVPHGLAGWVLNLSDRWVIGLTI"
     gene            831..>1658
                     /gene="lhgO"
                     /locus_tag="VIU37_02370"
     CDS             831..>1658
                     /gene="lhgO"
                     /locus_tag="VIU37_02370"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HEY6012815.1"
                     /translation="MVIVVGAGLVGLATALRLLEAQPGLAVTVLDKEPSVATHQSGHN
                     SGVIHRGITYPPGSLKAELCVQGVIDTEAFAAAHALPVLRCGKLIVATTPAERARLDG
                     LLERGVANGVAGLEIVGPERIREIEPRCAGVAALHSPGSAIVDFGLLAQAMRDDIRRL
                     GGEVRLGAEVIGIEERPEGVVVRAGHDELRADALVACAGLQSDRLADLGGVYRPDGVR
                     IVPFRGDYFRLRPERAGWCRGLIYPVPDPDLPFLGVHLTRRVDGEVWLGPNAVLAFAR
                     "
BASE COUNT          239 a          598 c          622 g          199 t
ORIGIN      
        1 gatcgtgagg ccgatgaccc atcgatcgga caggttgagg acccagcccg cgaggccatg
       61 cggcacgagc ggcaggccga agcgcaggcc ctcgcgggcg agctccgggt cgatcctcgc
      121 cggccggcgc cggctcagga gcgcgatcgt gaccccgacc gcgacgaggc ccgccgcgag
      181 ctggccgagc agcccgccga cggccccgag gtgcaggacg aggacgagcg cgagggtcac
      241 tccggcgccg acgacgaacg tcgcgaggcc gaacccgacg acgcgctcgg ggtgctcggt
      301 cgcgcggaac cacgtcgtcg gcacgaactg gagggccgtg accagggcga tgccggcggc
      361 gagccagccg tagggccaga ggtcgatgcc cgcgaagatc gccgcgaaga ccggtccggc
      421 gagcgtcacg aggacgaggc tgaacgcgat gccggccacg acggtgatcg ccgtgagcgt
      481 ccagtacagc gccgcggccc gcttcgaggc gaggtcgaag tggaaccgca gcagggcccc
      541 gtcctggccg agccggtaca ggatcgtgag cagcccggcc agcgacagca tcagcgagaa
      601 gatcccgaac tcggccgggc ccatgccgcg cgtgtagacc ggcaggagca ggaagatgcc
      661 gacccgcggc acgacgctcc cgatcgtgta caggagcgag cctcggagca gcccgccgaa
      721 ggtcaccggc ccgcccgccg agccaccgct cctgccgccc gccatcagcc ggtgacgcta
      781 gcacgctggc agagagccgc gagcgcgccg ccgatggcta gcatggccgg gtggtcatag
      841 tcgtcggggc aggcctggtg ggcctggcca cggccctccg cctgctcgag gcgcagccgg
      901 ggctcgccgt gaccgtcctg gacaaggagc cgtccgtcgc gacgcaccaa tcgggccaca
      961 actccggcgt gatccatcgc gggatcacct acccgcccgg atcgctcaag gccgagctgt
     1021 gcgtccaggg cgtcatcgac acggaggcgt tcgcggcggc ccacgctctg ccggtcctcc
     1081 gctgcggcaa gctcatcgtc gccaccacgc cggccgagcg ggcgcgcctc gacgggctgc
     1141 tggagcgggg cgtggcgaac ggcgtcgccg gcctggagat cgtcgggccg gagcggatcc
     1201 gagagatcga gccgcgctgc gccggggtcg ccgccctcca ttcgcccggc agcgcgatcg
     1261 tcgacttcgg cctgctggcc caggccatgc gcgacgacat ccggcggctg ggcggtgagg
     1321 tccggctggg ggcagaggtc atcggcatcg aggagcgccc ggagggcgtc gtcgttcgag
     1381 ccggccacga tgagctgcgc gccgatgcgc tcgtcgcctg cgccgggctg cagtcggacc
     1441 gcctcgcgga tctcggcggc gtttatcggc cggacggcgt ccggatcgtg ccgttccgcg
     1501 gcgactactt ccgcctccgg ccggagcggg ctggctggtg ccgcgggctc atctacccgg
     1561 tgcccgaccc ggacctgccg ttcctcggcg tgcatctcac ccgtcgggtc gacggcgagg
     1621 tctggctcgg gccgaatgcg gtccttgcgt tcgcccgt
//
LOCUS       DATDDI010000164         1967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_253153, whole genome shotgun sequence.
ACCESSION   DATDDI010000164 DATDDI010000000
VERSION     DATDDI010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253153"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..674
                     /locus_tag="VIU37_02375"
     CDS             <1..674
                     /locus_tag="VIU37_02375"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012816.1"
                     /translation="ERDSVYAFLTGADFVRSTARLHRLPDPEAAARRAISIVDMADAQ
                     DRRIATYSKGMRQRAKIAAALVHDPQVLLLDEPFNGMDPRQRLHMMELLRAMAAAGRT
                     ILFSSHILEEVERLADNVLVVYAGRLAASGDFREIRRLMTDRPHTFTVRSSDDRRLAS
                     QLVASPSVFGVELVDGTLTVRASEFAAFTMLLPRAAREAGISLFELRPTDESLESVFA
                     YLVRR"
     gene            671..1405
                     /locus_tag="VIU37_02380"
     CDS             671..1405
                     /locus_tag="VIU37_02380"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6012817.1"
                     /translation="MNWPIMLVTLRGALGRRRTILIALLALVPILIAGIIRVGGTTSD
                     AASLTAGLLDALLVTTVLPLVALVFGTGVLGSELDDGTAVYLLVKPIERWRIVLSKAV
                     VAAAVTILLVVPSTLLSGLVVGSGRGAESITFAFTIAVIPGAVLYATAFVALSVVTGR
                     ALIAGLLYVFIWEGLLAGLFAGTALLSVRQYVLAFARSLAGADRAAITSSVDAQTAAI
                     LTVVVLAAAIAIAIRRLAAWEVRTAE"
     gene            complement(1428..1718)
                     /locus_tag="VIU37_02385"
     CDS             complement(1428..1718)
                     /locus_tag="VIU37_02385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012818.1"
                     /translation="MLDELLFGDSSRRLATGLTLLLVAAIAAVVAARRARRSGLRWVP
                     QRGLLGVTLLLTPYGIGLILSAIWDGIGVVVFMVVAMAICGVVAMVSYARST"
BASE COUNT          260 a          715 c          693 g          299 t
ORIGIN      
        1 ctgagcggga ctccgtctac gcgttcttga ctggggctga cttcgtcagg tccaccgccc
       61 ggctgcaccg gctgcccgat cccgaagcgg ccgcgcgacg cgccatctcc atcgtggaca
      121 tggccgacgc gcaggaccgc aggatcgcga cgtactcgaa ggggatgcgg cagcgagcga
      181 agatcgccgc ggccctcgtc cacgacccgc aggtgctgct gctcgacgag ccgttcaacg
      241 gcatggaccc gcgccagcga ctgcacatga tggagctgct tcgcgcgatg gccgccgcgg
      301 gccggaccat cctgttctcg tcgcacatcc tcgaagaggt cgagcgactc gccgacaacg
      361 tcctggtcgt ctacgccggg cgcctcgccg cgtcgggcga cttccgggag atccgccgcc
      421 tgatgaccga ccggccccac acgttcaccg tccgctcgag cgacgaccgc cgcctcgcgt
      481 cgcagctcgt ggcgagcccg tcggtcttcg gggtcgagct ggtcgacggg acgctgacgg
      541 tccgggcgtc cgagttcgcg gcattcacga tgctcctgcc ccgggcggcg cgcgaggcgg
      601 ggatcagcct gttcgagctg cgcccgaccg acgagtccct cgaaagcgtc tttgcctacc
      661 tggtgcgccg atgaactggc cgatcatgct ggtgaccctg cgcggggcgc tcggccggcg
      721 acggacgatc ctcatcgcgc tgctcgccct cgtgcccatc ctcatcgccg ggatcatccg
      781 ggtcggcggg acgacctcgg acgccgcgag cctgaccgcc ggcctgctcg acgccctgct
      841 cgtcacgacc gtgctcccgc tcgtcgccct ggtgttcggg accggcgtgc tcgggtcgga
      901 gctcgacgac gggacggcgg tctacctgct ggtcaagccg atcgagcggt ggcgcatcgt
      961 gctgtcgaaa gccgtcgtgg ccgccgcggt cacgatcctg ctggtcgtcc cgtccacgct
     1021 gctgtccggc ctcgtggtcg ggagcggccg gggtgccgag tcgatcacgt tcgcattcac
     1081 catcgcggtg atcccagggg cggtgctgta cgccaccgcg ttcgtggcgc tcagcgtcgt
     1141 gaccggccgg gcgctcatcg ccgggctcct ctacgtgttc atctgggagg ggctgctggc
     1201 cgggctgttc gccggcacgg cgctgctcag cgtccgccag tacgtgctcg cgttcgcccg
     1261 ctcgctggcg ggcgccgacc gggcggcgat cacctcctcg gtcgacgccc agacggccgc
     1321 gatcctgacc gtggtcgtgc tggcagcggc gatcgccatc gccatccggc ggctcgccgc
     1381 gtgggaggtc cggaccgcgg agtagggccg tcgccgcggt caggcggtca ggtgctccgt
     1441 gcgtaggaaa ccatcgcgac gacgccgcag atggccatcg cgacgaccat gaagacgacc
     1501 acgccgatcc cgtcccagat ggcgctgagg atgaggccga tcccgtacgg cgtcagcaac
     1561 agcgtcacgc cgaggagccc tcgttggggg acccaccgca agccggatcg ccgcgcccga
     1621 cgggcggcca cgacggccgc gatggcggcg acgagcagca gggtcagccc cgtcgcgagc
     1681 cttcgagatg agtcgccgaa cagcagctcg tcaagcattc cgcccccatg cgcgcgattg
     1741 ccgggttccg gatcggattc cgacagtccc atccggcgcc cagaccgtca agagccggac
     1801 cgcccgatca gcgcgctccg cgcgggcctg cgggtcgact gggggcgcac gctgagcatc
     1861 cgggcgacgg tcgtcacggc ggggcatcgt ggcccgcgtc tccatcttgg tcgccttggt
     1921 cgagccggtc gcggccacgg gccgggagcg atgaccgggc aacgagg
//
LOCUS       DATDDI010000165         1804 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_606794, whole genome shotgun sequence.
ACCESSION   DATDDI010000165 DATDDI010000000
VERSION     DATDDI010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606794"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VIU37_02390"
     CDS             <1..420
                     /locus_tag="VIU37_02390"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HEY6012819.1"
                     /translation="IEAGNVRLAAARVTDDEIAGLVERLDAMAACIDNPERFSELDIA
                     MHMAVCAAAENFLLLQFMNIISTLGRVSRERTGGLRTVREAALEDHRQIVEGLRRHDA
                     DAAEAAMRRHLDHVDAGLKAVLGPDEARTAVSGARVL"
     gene            417..911
                     /locus_tag="VIU37_02395"
     CDS             417..911
                     /locus_tag="VIU37_02395"
                     /inference="COORDINATES: protein motif:HMM:NF017999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HEY6012820.1"
                     /translation="MNVQGSRTLDAPRAAVFAAICDPNTLLGIIPGCREIERVDDVEY
                     RGLISLRLPGMVGTYRTVVRLVETEPPAFGRLDGEVVGALGSITGTASFRLAELDGGT
                     RVDYEGRAVIGGPLARLDTRFAEGLARSLINQGLGNLEARLQGEPVIEVAGGGRPAAK
                     EESR"
     gene            908..1759
                     /locus_tag="VIU37_02400"
     CDS             908..1759
                     /locus_tag="VIU37_02400"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEY6012821.1"
                     /translation="MTVQAYLLPRSLPEALGQLEQHGLDVLVMAGGTVAMPLINDGIS
                     LPSVVMGLRFAGLDGVERANGRLRIGATTTLTQLLQQDAVPVLREAARNTASWSIRNM
                     GTVGGNLFTPPPGGDVAVALLALDAGVTLASSQRARVVSLADFYTGFMTNELAPDELL
                     AELWVPIPDEPTAFLKFGRKHANTPAVVTVAARVTWDGARIADARIALGAAGPHPIRV
                     RDAEGILVGSDLGADAIAAASAAAARECEPFTDAIATEWYRRRMVGLFVGRALQQLAQ
                     GAAGEDR"
BASE COUNT          252 a          648 c          665 g          239 t
ORIGIN      
        1 atcgaggccg gcaacgtccg gctcgccgcg gcccgggtga ccgatgacga gatcgcgggg
       61 ctcgtcgagc gactcgacgc catggcggcc tgcatcgaca acccggagcg gttcagcgag
      121 ctggacatcg cgatgcacat ggcggtgtgc gcggcggcgg agaacttcct gctgctccag
      181 ttcatgaaca tcatcagcac cctcggccgg gtcagccggg agcggaccgg cgggctgcgg
      241 accgtgcgcg aagcggcgct cgaagatcac cgccagatcg tcgagggcct gcgccggcac
      301 gatgccgacg ccgccgaagc agcgatgcgc cggcacctcg accacgtcga cgccgggctc
      361 aaggccgtcc tcggcccgga cgaggcgcga acggcggtct ccggagcccg ggtcctgtga
      421 acgtccaggg cagccggacg ctcgatgcgc cgcgcgccgc ggtgttcgcc gcgatctgcg
      481 acccgaacac gctgctcggg atcatccccg gctgccgcga gatcgagcgg gtggacgacg
      541 tcgagtaccg cggcctgatc tcgctgcgac tgcccggcat ggtcggcacc tatcgcacgg
      601 tcgtccggct ggtcgagacc gagcccccgg ccttcggtcg tctcgacggg gaggtcgtcg
      661 gggcgctggg ctccatcacc gggacggcct cgttccggct cgccgaactc gacggcggga
      721 ccagggtcga ttacgagggg cgggccgtca tcggcgggcc cctggccagg ctcgacaccc
      781 gcttcgcgga agggctggcc cgctcgctca tcaaccaggg actgggcaac ctggaggcac
      841 gactccaggg cgagcccgtg atcgaggtcg ccggcggtgg ccggccggcc gccaaggagg
      901 agtcgaggtg acggtccagg cctacctgct gccccgatcg ctgccagagg cgctcggcca
      961 gctcgagcag cacgggctcg acgtcctggt gatggccggc gggacggtcg ccatgccgct
     1021 gatcaacgac gggatctcgc tgccatccgt ggtcatgggc cttcgttttg cgggcctcga
     1081 cggcgtcgag cgcgccaacg gccggctgcg gatcggcgcg acgacgacgc tgacccagct
     1141 cctgcagcag gacgccgtcc cggtcctgcg cgaagccgct cggaacaccg ccagctggtc
     1201 catccggaac atggggaccg tcggcggcaa cctgttcacg cccccgcccg gcggcgacgt
     1261 ggccgtcgcc cttctcgcgc tggacgccgg cgtgacgctc gccagctcgc agcgcgccag
     1321 ggtcgtctcg ctggccgact tctacacggg gttcatgacc aacgagctcg caccggacga
     1381 gctgctcgcc gagctgtggg tgcccatccc ggacgagccc accgcgttcc tgaagttcgg
     1441 gcggaagcac gccaacacgc cggcggtcgt gacggtggcc gcgcgcgtga cctgggatgg
     1501 cgcccggatc gccgacgccc ggatcgcgct gggcgcggcc ggcccgcacc cgatccgggt
     1561 gcgcgacgcc gagggcatcc tggtcggcag cgatctgggt gcggacgcga tcgccgcggc
     1621 gagcgcggcg gccgcccgcg aatgcgaacc cttcaccgac gcgatcgcca ccgagtggta
     1681 ccggcgccgg atggtcggcc tgttcgtcgg ccgggcactg cagcagctgg cgcagggcgc
     1741 cgccggggag gatcgctagc catggcgtcg acgatcgtca ccttcgagct cggcggccgg
     1801 gagg
//
LOCUS       DATDDI010000166         1752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_169810, whole genome shotgun sequence.
ACCESSION   DATDDI010000166 DATDDI010000000
VERSION     DATDDI010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169810"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1316
                     /locus_tag="VIU37_02405"
     CDS             <1..1316
                     /locus_tag="VIU37_02405"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6012822.1"
                     /translation="VEVGLGYLSLDRASGTLSGGEAQRTKMIRHLGSSLTDVTYVFDE
                     PTTGMHPHDVTRMNALLLRLRDQGNTVLVVEHEPETIAIADHVVDLGPGAGTGGGTIC
                     FEGTVEGLKASDTLTGRHLDHRMALKDTVRTPTGTLEIRGANSHNLQDVDVDIPLGVL
                     CVVTGVAGSGKSSLIHGSIPDGAGVVSIDQGAIQGSRRSSPATYTGLLDPIRTAFARA
                     NDVKPALFSSNSEGACPTCNGNGMIYTELSFMETVATPCEDCGGKRFQASVLELRLGG
                     ANIAEVLDLPVAEAHAFFAEGEAKTPAAVSILARLEDVGLGYLKLGQPLPTLSGGERQ
                     RLKLATRMAEKGGIYILDEPTTGLHLADIEQLLRLLDRLVESGKSVIVISHHQAVMAH
                     ADWIIDLGPGAGHDGGRIVFEGTPADLVAARSTLTGEHLAAYVGA"
     gene            1372..>1752
                     /locus_tag="VIU37_02410"
     CDS             1372..>1752
                     /locus_tag="VIU37_02410"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6012823.1"
                     /translation="MTRTTSADQRFEDLAWLRRVRDRMDREYDLPLDLERLARGAHMS
                     AGHLSREFKLAYGESPYGYLMTRRIERAMALLRRGDLSVTEVCFAVGCSSLGTFSTRF
                     TELVGVPPSVYRQQEADAAAGIPAC"
BASE COUNT          258 a          644 c          599 g          251 t
ORIGIN      
        1 tggtcgaggt cggcctgggg tacctctcgc tggatcgggc atccggcacg ctgtccggcg
       61 gcgaggccca gcggacgaag atgatccggc acctcgggtc gtccctcacc gacgtcacct
      121 acgtcttcga cgagcccacc accggcatgc acccccacga cgtcacccgg atgaacgcgc
      181 tgctgctgcg gctgcgcgac cagggcaaca ccgtgctcgt cgtcgagcac gagccggaga
      241 cgatcgcgat cgccgaccac gtcgtcgacc tcggccccgg ggcgggcacc ggcggcggga
      301 cgatctgctt cgaggggacc gtcgaggggc tgaaggcgtc cgacaccctc accggccgtc
      361 atctcgacca ccgaatggcg ctcaaggaca cggtccggac gccgaccggc acgctcgaga
      421 tccgcggcgc gaactcgcac aacctccagg acgtcgacgt cgacatcccg ctcggcgtgc
      481 tctgcgtcgt gaccggcgtg gccggctccg gcaagtcgtc gctcatccac ggctcgatcc
      541 cggacggcgc cggcgtcgtc tcgatcgacc agggcgcgat ccagggctcg cgccggagca
      601 gtcccgcgac ctacacgggg ctcctcgacc cgattcgcac cgcgttcgcc agggcgaacg
      661 acgtgaagcc ggcgctgttc tcctcgaatt cggagggcgc ctgccccacc tgcaacggca
      721 acgggatgat ctacacagag ctcagcttca tggagacggt ggcgacgccg tgcgaggact
      781 gcgggggcaa gcggttccag gcgtcggtgc tggagctgcg actgggtggg gccaacatcg
      841 ccgaggtcct cgacctgccg gtcgccgagg cacacgcctt ctttgccgag ggtgaggcga
      901 agacgccggc ggccgtgtcg atcctcgccc gactcgagga cgtcgggctc ggctacctca
      961 agctcggcca gccccttccg acgctgtcgg gcggcgagcg ccagcggctc aagctggcca
     1021 cgcgcatggc cgagaagggc ggcatctaca tcctcgacga gccgacgacg ggcctccacc
     1081 tcgccgacat cgagcagctc ctccgcctgc tcgaccggct tgtcgagtcc ggcaagtcgg
     1141 tcatcgtgat ctcgcatcac caggcggtga tggcccacgc cgactggatc atcgacctcg
     1201 ggcccggggc gggccacgac ggcggccgga tcgtgttcga gggcacgcca gccgacctcg
     1261 tcgcggcgcg ctcgacgctg acgggcgagc atctcgccgc ctacgtgggc gcgtgagcgc
     1321 cgcagccgca tgtgtctcca ctggttgccg gcctgtggca cgatctccca ggtgacccgc
     1381 acgacgtccg ccgaccagcg cttcgaggac ctcgcctggc tccgccgcgt tcgcgaccgg
     1441 atggaccgcg agtacgacct gccgctggac ctcgagaggc tcgcgcgcgg cgcgcacatg
     1501 tccgccgggc acctcagccg ggagttcaag ctcgcctacg gcgagtcgcc ttacggctac
     1561 ctcatgacgc gccgcatcga gcgcgcgatg gcgctgctcc gccggggcga cctgagcgtc
     1621 acagaggtct gcttcgcggt cggctgctcg tcgctgggca cgttcagcac ccgcttcacc
     1681 gagctcgtcg gcgtgccgcc gagcgtgtac cggcagcagg aggcggacgc ggccgcgggc
     1741 attccggcat gc
//
LOCUS       DATDDI010000167         1829 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_690144, whole genome shotgun sequence.
ACCESSION   DATDDI010000167 DATDDI010000000
VERSION     DATDDI010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690144"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..597
                     /locus_tag="VIU37_02415"
     CDS             76..597
                     /locus_tag="VIU37_02415"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY6012824.1"
                     /translation="MRDSRPIWRLTPVGAESRDIWPFNSAAAIEIVFTEANMDTKQLL
                     VADVMTIDPIVVVDDAPLEDAARLLRTYSISGLPVVDGEGALVGVISQTDLVAIEEGQ
                     IGRLIRTEASGLRVGELMSSPAITVPMTGSLAEAARLMRDRRIHRLVALSDEGRPVGV
                     LSASDFVALYAEE"
     gene            683..1114
                     /locus_tag="VIU37_02420"
     CDS             683..1114
                     /locus_tag="VIU37_02420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012825.1"
                     /translation="MTVQWPEWASQRDPDRRRRLVRYAAALLSAATALAYFGIGLGVL
                     RIVETTTPDTPDLFTFGAVSGAAFVLGTVLLLTFDHRGVWLLGAVFQVGVIVMYVAVS
                     PQRTPPFEQWGILIKVLQVAILVALAYLVIRQPVRRTIRAS"
     gene            complement(1124..1699)
                     /locus_tag="VIU37_02425"
     CDS             complement(1124..1699)
                     /locus_tag="VIU37_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012826.1"
                     /translation="MRIIRRLFTLFWTGLVLAMVLGAIGALAARRRIVPAPAADADEV
                     ELRAIFEPLHFESHAPAFRGGTIECWYGGGVIDLRQAKLDPAGARLDVRTVFGGGQII
                     VPEAWNVSTGVIGIGGVGDSRSRVPRDPGAPHLTISGYAMFGGFAVMSDVPEDELRGL
                     DEQIRRWARHDPVASLGDAGPKTEPDPGPAS"
BASE COUNT          251 a          643 c          651 g          284 t
ORIGIN      
        1 tgaaccgtga cgctcacccg acgcctcaag cttggccggc cctggcggcc cggtgatggg
       61 ccgaatggac cctttgtgcg ggactcgcgg ccgatttggc gcctgacccc ggtcggcgcc
      121 gagagtcggg acatttggcc cttcaactcc gcggccgcaa tcgagatcgt gttcacggag
      181 gccaacatgg acaccaagca gctcctggtc gccgatgtca tgacgatcga cccgatcgtg
      241 gtcgtcgacg acgcgccgct cgaggacgcc gcacgcctcc ttcggacgta ttcgatcagc
      301 gggctgccgg tcgtggacgg cgagggagcc ctggtcggcg tcatcagcca gaccgatctc
      361 gtggccatcg aggaaggaca gatcggccgc ctcatccgga cggaagccag cggccttcgc
      421 gtgggcgagc tgatgagctc gccggcgatc acggtcccga tgacgggctc gctggccgag
      481 gccgcccggc tgatgcggga ccggcggatc caccggctcg tcgcgctgag cgacgagggg
      541 cgcccggtcg gcgtcctgtc cgcctcggac ttcgtcgcgc tctacgccga ggaatgagat
      601 ccgcgcagcg tccgttcatc ggtcgcgacg ggatgactgg ttggcggtcg ttgtccggcc
      661 gcacgctcga ggaggtgtgg gggtgaccgt gcaatggccc gagtgggcgt ctcaacgcga
      721 tccggatcgc cggaggcgcc tggtccgata cgcggccgcc ctcctgtcgg cggcgaccgc
      781 gctggcgtac ttcgggatcg ggctcggcgt gctcaggatc gtcgagacga cgacgcccga
      841 cacccctgac ctgttcacgt tcggggcggt gtcgggcgcg gcgttcgtgc tcgggaccgt
      901 cctgctgctc acgttcgacc accgtggcgt gtggctgctc ggcgccgtct tccaggtcgg
      961 ggtgatcgtg atgtacgtcg cggtctcgcc ccagcgcacg ccgccgttcg aacagtgggg
     1021 catcctcatc aaggtgctcc aggtggcgat cctggtggcg ctcgcctatc tcgtcatccg
     1081 ccagcccgtg cgccggacga tccgggcgag ctgagaccgg gcgtcagctc gccgggccgg
     1141 gatcgggttc ggtcttgggg ccggcgtcgc cgagcgacgc gaccgggtcg tgacgtgccc
     1201 atcgtcggat ctgctcgtcg aggccccgga gctcgtcctc ggggacgtcg gacatgaccg
     1261 cgaatccacc gaacatcgcg tagccgctga tcgtcaggtg cggcgcaccg gggtcgcgcg
     1321 gcacgcgcga tcgcgagtcg ccgaccccgc cgatgccgat cacgccggtg ctgacgttcc
     1381 aggcctcggg cacgatgatc tggccgccac cgaagacggt ccggacgtcg aggcgcgcgc
     1441 cggccgggtc cagcttcgcc tggcgaagat cgatcacgcc gccgccgtac cagcactcga
     1501 tcgtgccgcc gcggaacgcc ggcgcgtggc tctcgaaatg gaggggttcg aagatcgctc
     1561 gcagctcgac ctcgtcggcg tcggccgcgg gcgccggcac gatccgccgc cgcgcggcga
     1621 gcgccccgat cgcaccgagg accatggcca ggaccaggcc ggtccagaag agcgtgaaca
     1681 gccgcctgat gatccgcacg ttcgactcct tcgctcgcgg tatccggccg ccggccgccg
     1741 cgcccagcgt ctgcccggcg cgacgggacc gacacgcctc catcatggaa caccgttcgg
     1801 cgggaatcgc caagggccga ccggccttc
//
LOCUS       DATDDI010000168         1740 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_690175, whole genome shotgun sequence.
ACCESSION   DATDDI010000168 DATDDI010000000
VERSION     DATDDI010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690175"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..1085)
                     /locus_tag="VIU37_02430"
     CDS             complement(102..1085)
                     /locus_tag="VIU37_02430"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEY6012827.1"
                     /translation="MPTRTTPSPILPIELIALDIDGTLIGDDLIIGPDTRAAVAEAMR
                     RGVQVSLITGRMVSSALRFARDLGLTGPIVGYQGGLIRAMPVDGSGRVGRLLVHTPIR
                     ADVAREIVEWTRDRGLDPHINHLERFVLRADDPNADDYSAFMGARAELVADLAGSISH
                     PVTKVLAVGDPPRPTELAPLARAHFAGRADVTISHPKFLEFVAPGVSKGRAVRWLARR
                     LGVALGATLAIGDQWNDLEMLSEVGHGAAMPSAPRAVQAAARYIAPGLAEEGVARMIE
                     ALVLATPGDARASAERLAAAARVTVAAARDAEPGIASKEVALGLPAEKIPA"
     gene            complement(1140..>1740)
                     /locus_tag="VIU37_02435"
     CDS             complement(1140..>1740)
                     /locus_tag="VIU37_02435"
                     /inference="COORDINATES: protein motif:HMM:NF017026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY6012828.1"
                     /translation="LAEPEVMHRLGAGMRPAGAQPLRVADVGTGSGAVAVALASVLRR
                     RGALASVEIVATDQSVDALDLARENAVAHAVADAIRFERADLLPGPAGSEAAPSFDVI
                     LANLPYVRHDAMPGLPVAASFEPAIALDGGDDGLEVIARLLERLPAALAEGGVALLEI
                     GADQGEAIVERCGETLPGWSCLVEVDLAGLPRVVRIRRD"
BASE COUNT          240 a          661 c          636 g          203 t
ORIGIN      
        1 gccgtagacg gtgtcggtcg gcagcgcgac gacgccgccg ccgcggagca cctcgatcgc
       61 tgccgtacgc ccggccggat cgtcgtggac gaccgtggcg gtcacgccgg gatcttctcc
      121 gccggtagcc cgagggcaac ctccttggag gcgatccccg gctccgcgtc ccgggccgcc
      181 gcgaccgtca cgcgcgccgc cgcggccaac cgctcggcgg acgcccgggc atcgcccggc
      241 gtggcgagca cgagcgcttc gatcatccgg gcaacgccct cctcggccag gccgggcgcg
      301 atgtaccggg cggctgcctg gacggcccga ggcgcgctcg gcatcgccgc gccatgcccc
      361 acctcggaga gcatctcgag gtcgttccac tggtcgccga tcgccagcgt ggcgcccagg
      421 gccacgccga gacggcgcgc cagccagcga acggcccgcc ccttcgacac gccgggtgcc
      481 acgaactcga ggaacttggg atggctgatc gtcacgtccg cgcgaccagc aaaatgcgcc
      541 cgggcgagcg gcgccagctc ggtcggacgt gggggatcgc ccaccgccag gaccttggtc
      601 accgggtggc tgatcgagcc ggcgaggtcc gccacgagct cggcccgggc gcccatgaac
      661 gcgctgtagt cgtcggcgtt ggggtcgtcc gcccgcagca cgaagcgctc gagatgattg
      721 atgtgcgggt ccaggccgcg atcgcgcgtc cactccacga tctcgcgggc gacgtcggcg
      781 cggatgggcg tgtgcaccag cagccggccg acacgccctg agccgtcgac cggcatcgcc
      841 cggatcaacc cgccctggta gccgacgatc gggccggtga gcccgaggtc gcgggcgaac
      901 cggagcgcgc tcgagaccat ccgccccgtg atgagcgaga cctggacgcc gcgccgcatc
      961 gcctcggcca ccgccgcacg ggtgtcgggc ccgatgatca ggtcgtcgcc gatgagcgtg
     1021 ccgtcgatgt ccagtgcgat gagctcgatg ggcaggatcg gcgagggggt cgtccgggtg
     1081 ggcaccccag gatgatgccc gacgagcggc aacggtgccg cgaccgtcgg gcgcgggcct
     1141 cagtcgcgcc ggatccgcac gacgcgtggc agaccggcca ggtccacctc gaccaggcac
     1201 gaccatcccg gcagtgtctc cccgcagcgc tcgacgatcg cctcgccctg gtcggcgccg
     1261 atctcgagca gcgccacgcc gccctcggcc agcgcggcgg gcagccgctc gagcaggcgg
     1321 gcgatgacct ccaggccgtc gtcacccccg tcgagggcga tggccggctc gaacgaggcc
     1381 gcgaccggca ggcccggcat cgcgtcgtgc cggacgtacg gcaggttcgc caggatcacg
     1441 tcgaacgacg gcgcggcctc ggaacctgca ggaccgggaa gcaggtctgc ccgctcgaac
     1501 cggatggcgt ccgccacggc gtgcgccacc gcgttctcgc gggcgaggtc gagcgcgtcc
     1561 acggactggt ccgtggcgac gatctccacg gaggcgagcg cccctcggcg acgcaggacg
     1621 gacgcgagcg ccacggcgac cgccccgctc cccgtcccga catcggcgac gcggagcggc
     1681 tgggccccgg ccggtcgcat gcccgcgccc aggcggtgca tgacctcggg ttcggccagc
//
LOCUS       DATDDI010000169         1998 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_606875, whole genome shotgun sequence.
ACCESSION   DATDDI010000169 DATDDI010000000
VERSION     DATDDI010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606875"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1998)
                     /locus_tag="VIU37_02440"
     CDS             complement(<1..>1998)
                     /locus_tag="VIU37_02440"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6012829.1"
                     /translation="VLGRVCPAPCEEHCRRDEVDEAIAIRDSHRYAGDQVIRQMLDED
                     VDPPVPFEMQAKTGRRVAVIGSGPAGMAAAYYLLIAGHDVTVFERDPAPGGMLRYGIP
                     QYRLPKVEILEAEYESVTRLGGKMVCNAELGKDFTLDDLTNQGFDSVVVAIGCYDTNK
                     LGIPGEDAAECIDGLEYLRTATLGLPYPEHAGKRVVVIGGGFTSMDCSRTSVRQGAKE
                     VTLVYRRDMKDMPASNEVHEAIEEGVTAIFQAGPVRVITDEAGKVTGVEFIRMALGAP
                     DASGRRRPEPAPGTEFTIPCDRVLLAIGQGPELDWIGPGSTGPKATKNRRLQADAVTF
                     ETGRPGVFGTGDVRVGAATVVQAIAEGRRAAYAVDAFLRGNDLSAIRTRQTLAEPQPE
                     FLSIVPFTAEVKEPRYRLKAMEAEERRGSYVEYEIPYSREEIVAESTRCLQCTCEAIG
                     YCDLRRLGIEYGTTLRTLEPQPNAGAGVRSVGENRFTGINHDYVRDDSHAFILREPSR
                     CIDCGRCANVCAEVVGAACYDFMRIGFDTLVTTPLDMSLNDTPCVSCGRCAETCPTGA
                     LMPKPRVLQKYEVDESRCILCGICVDACPYDAVRDSDQFELSHTSREEPMIDLLALAS
                     VERETEMSYIRRERDWAERARAEGRLLDQSRLLPVLPPSLVG"
BASE COUNT          271 a          692 c          732 g          303 t
ORIGIN      
        1 gccgacgagc gagggaggca ggacggggag gaggcggctc tggtcgagga gacgtccctc
       61 ggcccgcgct cgctccgccc agtcgcgctc gcgacggatg tagctcatct cggtctcgcg
      121 ctcgaccgac gccagcgcga ggaggtcgat catcggctcc tcgcgggacg tgtggctgag
      181 ctcgaactgg tcgctgtcgc ggacggcgtc gtaggggcag gcgtcgacgc aaatgccgca
      241 caggatgcag cggctctcgt cgacctcgta cttctggagg acgcggggct tgggcatcag
      301 cgcgccggtg gggcacgtct ccgcgcagcg gccgcaggac acgcacggcg tgtcgttgag
      361 gctcatgtcg agcggcgtcg tgaccagcgt gtcgaagccg atccgcataa agtcgtagca
      421 ggccgcgccc acgacctccg cgcagacgtt ggcgcagcgg ccgcagtcga tgcagcgcga
      481 cggctcgcgc aggatgaagg cgtggctgtc gtcgcgaacg tagtcgtggt tgatgcccgt
      541 gaaccggttc tcgccgacgc tgcggacccc ggcgccggcg ttcggctgcg gctcgagcgt
      601 ccggagcgtc gtgccgtact cgatgccgag ccggcgcagg tcgcagtagc cgatcgcctc
      661 gcaggtgcac tggaggcagc gcgtggactc ggcgacgatc tcctcgcgcg agtacgggat
      721 ctcgtactcg acgtagctgc cgcggcgctc ctcggcctcc atcgccttga gccggtaacg
      781 cggctccttg acctcggcgg tgaacggcac gatcgacagg aactcgggct gcggctcggc
      841 cagcgtctgg cgggtgcgga tcgccgacag gtcgttgccg cgcaggaacg cgtcgaccgc
      901 gtaggccgcg cggcgaccct cggcgatggc ctggacgacg gtcgccgcgc cgacgcgcac
      961 gtcgccggtc ccgaacacgc cgggccgacc cgtctcgaac gtgaccgcgt ccgcctgcag
     1021 gcgccggttc ttggtggcct tgggcccggt ggagccgggg ccgatccagt ccagctccgg
     1081 cccctgcccg atcgcgagca ggacgcggtc gcaggggatc gtgaactcgg tgccgggcgc
     1141 cggctccggc cgccgccggc cggacgcgtc aggcgcgccg agcgccatcc ggatgaactc
     1201 gacgccggtg accttgccgg cctcgtcggt gatgacccgg accggaccgg cctggaagat
     1261 ggccgtgacg ccttcctcga tcgcctcgtg gacctcgttc gacgcgggca tgtccttcat
     1321 gtcgcggcgg tagacgaggg tgacctcctt ggcgccctgg cggaccgagg tccgcgagca
     1381 gtccatcgag gtgaacccgc cgccgatcac caccacccgc ttgcccgcat gctcggggta
     1441 gggcaggccg agcgtcgcgg tgcggaggta ctcaaggccg tcgatgcact cggccgcgtc
     1501 ctcgcccggg atcccgagct tgttcgtgtc gtagcaaccg atcgcgacga cgaccgaatc
     1561 gaagccctgg ttggtgaggt cgtcgagcgt gaagtccttg ccgagctcgg cgttgcagac
     1621 catcttgccg ccgagccggg tgaccgactc gtactcggcc tcgaggatct cgaccttcgg
     1681 caggcggtac tgggggattc cgtagcggag catcccgccc ggcgccgggt cgcgttcgaa
     1741 gacggtcacg tcgtggccgg cgatgagcag gtagtaggcg gccgccatgc ccgccggccc
     1801 ggacccgatg acggcgacgc ggcggcccgt cttcgcctgc atctcgaacg ggaccggcgg
     1861 gtcgacgtcc tcgtccagca tctggcggat gacctggtcg cccgcgtagc gatggctgtc
     1921 ccggatggcg atggcctcgt cgacctcgtc gcgccggcag tgctcctcgc acggcgccgg
     1981 gcagacccgg cccagcac
//
LOCUS       DATDDI010000170         1668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_523657, whole genome shotgun sequence.
ACCESSION   DATDDI010000170 DATDDI010000000
VERSION     DATDDI010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523657"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..1441)
                     /gene="selA"
                     /locus_tag="VIU37_02445"
     CDS             complement(71..1441)
                     /gene="selA"
                     /locus_tag="VIU37_02445"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEY6012830.1"
                     /translation="MSTERPHPPSVEAVLAAARRREDARREPGAVLHEAREVVDDERD
                     RLAAGAEPTGVDGLADELAERLAGFEHVATSPVINATGVVVHTNLGRAPWPEAAIRAA
                     KEAAGGYLLLELDRATGRRGARLRTAEEHLVALTGAEDALVTNNNAAALALAVGLAGR
                     GGGVVVSRGELVEIGGGVRIPEIVRRAGARLIEVGTTNRTRAEDFEAPLSEGRARLVL
                     RVHPSNFRMGGFTEVPDPGELARLAHAHGAIVVDDLGSGALLATEAFGLAHEPTPRER
                     LAAGADLVTFSGDKLVGGPQAGLAVGRADLISRLRRDPLARAMRPDKATLAGVAATLG
                     LYRAGRAVEAIPVWSMIAMPAASIRERAEAVAASLGGSAAAEVVAVESTVGGGSLPGE
                     TLPSFAVTLRVRSATRVLAALRRGSPAVVGRIADGRVLLDLRTVHPADDERLAEAIVR
                     AIEAPA"
     gene            complement(1452..1548)
                     /locus_tag="VIU37_02450"
     tRNA            complement(1452..1548)
                     /locus_tag="VIU37_02450"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1512..1514),aa:Sec,seq:tca)
BASE COUNT          216 a          665 c          583 g          204 t
ORIGIN      
        1 atcccggtga gcgcccggag cagggtcgtc ttgccgtgat cgatgtggcc ggcggtgccg
       61 atgacgacgg tcacgcgggc gcctcgatgg cgcgaacgat cgcctccgcc agccgttcgt
      121 cgtccgccgg gtggaccgtc cgcaggtcga ggagcacccg gccgtcggcg atgcgaccga
      181 cgaccgccgg gctgccgcgg cgcaacgccg ccagcacgcg ggtcgccgat cggacgcgga
      241 gcgtcacggc aaacgagggc agcgtctccc ccggcagcga cccgccgcca acggtcgatt
      301 cgacggccac cacctcagcg gccgccgatc cgccgagcga cgccgcgacc gcctccgcgc
      361 gctcccggat cgatgccgcc ggcatggcga tcatcgacca gaccgggatc gcctcgaccg
      421 cgcgtccggc ccggtacagt ccgagcgttg cggccacacc ggccagtgtc gccttgtcgg
      481 gccgcatcgc gcgcgccagc ggatcccggc gcagccgaga gatcaggtcg gcacggccga
      541 cggcgagacc ggcctgcggt ccgcccacga gcttgtcgcc gctgaacgtc acgaggtccg
      601 cacccgccgc gagccgctcc cgcggcgtcg gctcgtgcgc cagcccgaat gcctcggtcg
      661 ccagcagcgc gccggaaccg aggtcgtcca cgacgatcgc cccgtgcgcg tgcgccagcc
      721 gggcgagctc cccgggatcc ggcacctccg tgaagccgcc catccggaag ttcgacgggt
      781 ggactcgcag gaccagccgt gcgcgaccct ccgacaacgg cgcctcgaag tcctccgccc
      841 gggtccggtt cgtggtgccg acctcgatga gcctggcgcc ggcccgccgg acgatctcgg
      901 gaatccggac gccgccgccg atctccacga gctcgccccg cgacacgacc acgccgccac
      961 cccgtccggc gagcccgacc gcgagcgcga gcgccgccgc gttgttgttg gtgacgagcg
     1021 cgtcctcggc gccggtcagc gcgacgagat gctcctcggc cgtccggagc cgcgcacccc
     1081 ggcgaccggt ggcccggtcg agctcgagca ggaggtaccc tccggccgcc tccttcgcgg
     1141 cacggatggc cgcctcgggc cacggcgccc gacccaggtt ggtgtgcacg acgacgccgg
     1201 tcgcgttgat gacggggctc gtggcgacgt gctcgaatcc ggccagtcgc tccgccagct
     1261 cgtcggcgag gccgtcgacc ccggtcggtt cggcgcccgc cgccagtcgg tcgcgctcgt
     1321 cgtcgaccac ctcgcgcgcc tcgtggagta cggcacccgg ctcgcgcctg gcgtcctccc
     1381 gtcgccgggc ggccgccagg acggcttcga cgctcggcgg atgcggacgc tcggtcgaca
     1441 tcggacctcc atggcgggag cgcatgggag tcgaacccac cgcgccgcgc cgagcgccgc
     1501 gccactggtt ttgaagacca ggggacccac cgggacccga ccgctcccgc gcgatggtag
     1561 ccctatcatc gaacggtgga cgcgcctaaa ccggccccgt tccgcctgac cgcgctgacc
     1621 gattgcggcg gttgcgccgc caagctcggt gccgacctgc tggccgac
//
LOCUS       DATDDI010000171         1613 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_273987, whole genome shotgun sequence.
ACCESSION   DATDDI010000171 DATDDI010000000
VERSION     DATDDI010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273987"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..476)
                     /locus_tag="VIU37_02455"
     CDS             complement(27..476)
                     /locus_tag="VIU37_02455"
                     /inference="COORDINATES: protein motif:HMM:NF022059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HEY6012831.1"
                     /translation="MLLGGYFGTWARAEEIWDLPLDPEVMREAGLTFGCGIVGVLGAG
                     TCGVSAAARIMRFMARESAAQCGPCVYGLDALGSAVTRVATGHARGDDLQRIERLVGI
                     TAGRGACHHPDGAVQHMASALDVFGDEFQHHARKGSCSTTGGGPGVG"
     gene            510..1196
                     /locus_tag="VIU37_02460"
     CDS             510..1196
                     /locus_tag="VIU37_02460"
                     /inference="COORDINATES: protein motif:HMM:NF014755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEY6012832.1"
                     /translation="MEIEQFVDANEAATNTKFVKQAYYVEADRVGRKAFALLKEVLQD
                     KGLTAICKIVIRDREVLAALDPFENTMLLSTLYWPDEIRALGELDLPEEEPEIKPAEK
                     KMAAQLIEAMTGEFDPAAYRDEYREALMQVIESKIEGRETVEIEPAEEPTKLVDLMAA
                     LQASVNAATSAREAKAGKPVSVAEAKKQRAAKGKASEATTTRGTKATAKPENADEAEE
                     ERPARRRKSA"
     gene            complement(1328..>1613)
                     /locus_tag="VIU37_02465"
     CDS             complement(1328..>1613)
                     /locus_tag="VIU37_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012833.1"
                     /translation="GCYDVVELVPSGLAPLATSHDDGSSGVTWPSSGNGQAVTFCAEN
                     GPRTGHLARLRYVARIVNAGTFTWEPAIMTIDGIPEVLTVSGTSVVRIDE"
BASE COUNT          287 a          567 c          567 g          192 t
ORIGIN      
        1 aatcgacgcg gacgcgcacg tccacctcag ccgaccccgg ggccgccgcc ggtggtggaa
       61 cagctgccct tccgagcgtg gtgctggaac tcgtcgccga acacgtcgag cgcgctcgcc
      121 atgtgctgga cggcgccgtc cgggtggtgg caggcaccgc gaccggcagt gatcccgacc
      181 aggcgttcga tgcgctggag atcgtctccg cgggcgtggc cggtcgcgac ccgcgtgacc
      241 gcggagccca gcgcgtccag cccgtacacg cacggcccgc attgggccgc gctctcgcgt
      301 gccatgaacc gcatgatccg ggcggccgcc gacacgccgc aggttcccgc gcccagcacg
      361 ccgacgatgc cgcagccgaa tgtcaggccg gcctcccgca tgacctcggg atcgagcggc
      421 aggtcccaga tctcctcggc gcgcgcccag gtgccgaagt agccgcccag gagcacggcg
      481 cgggtcccgc cctgaagacg gttcgctcga tcgagatcga gcagttcgtc gacgcgaacg
      541 aggcagccac caacacgaag ttcgtcaagc aggcctacta cgtcgaggcg gaccgggtcg
      601 gccgaaaggc gttcgcgctg ctcaaggagg tgctccagga caagggcctc accgcgatct
      661 gcaagatcgt gatccgtgac cgcgaggtcc ttgccgcgct cgatccgttc gagaacacga
      721 tgctcctctc cacgctctat tggccggacg agattcgcgc cctgggcgag ctggacctgc
      781 ccgaggagga gcccgagatc aagcccgccg agaagaagat ggcggcgcag ctgatcgagg
      841 cgatgaccgg cgagttcgac cccgccgcct accgcgacga gtaccgcgaa gcgctcatgc
      901 aggtcatcga gtcgaagatc gagggtcgcg agacggtcga gatcgagccg gccgaggagc
      961 cgacgaagct cgtcgacctc atggccgcgc tccaggcgag cgtgaacgcg gcgacgtccg
     1021 cacgcgaggc gaaggccggc aagcccgtct ccgtcgccga ggcgaagaag cagcgggccg
     1081 ccaagggcaa ggcatccgag gcgacgacca ccaggggcac gaaggccacc gcgaagccgg
     1141 agaacgccga cgaggcggag gaagagcgcc ccgcgcgtcg tcgcaagagc gcctaggacg
     1201 cacgtacccg aggtcgcgcc cgggaacacc tgcgccgtga cgagcggccg ccacggccca
     1261 cggggacgca aatcgtacgg gcgcgacgcc gtcaggctcg gaggcggcgc cggccgtccg
     1321 cgaacggcta ttcgtcgatg cggacgaccg acgtgccgct gacggtcagg acctcaggga
     1381 tgccgtcgat ggtcatgatc gccggctccc aggtgaacgt cccggcattc acgatcctgg
     1441 ccacgtagcg cagccgggcg aggtgaccgg tgcgaggccc gttctcggca cagaacgtga
     1501 ccgcctggcc gttgccgctc gacggccagg tcacgccgct cgaaccgtcg tcatggctcg
     1561 tcgccagcgg ggcaagaccc gaggggacga gctcaaccac gtcgtagcag ccg
//
LOCUS       DATDDI010000172         2090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_482166, whole genome shotgun sequence.
ACCESSION   DATDDI010000172 DATDDI010000000
VERSION     DATDDI010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482166"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1168)
                     /locus_tag="VIU37_02470"
     CDS             complement(<1..1168)
                     /locus_tag="VIU37_02470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012834.1"
                     /translation="MTIPTLEETRRMLVEDGDFETLAELNRVVAERERAKQGGIVKSL
                     RGWIESLHPRDAFGRFRRKGATVRPIPSAIATPLGELDRRYPGVLDRAKISAKGHRRH
                     GASVGAGLAMESIAGAIKTGIVERIGRARWNRSIEDLRADLRQERHPAHRFDADALYL
                     WAFRRWQDLHNRGDTKGEGAVPTWGRWLDRTWRSVSAGVSAAREEWTGTARVHAVTPD
                     EPIYVGADVDRAAELLAQGKRVELDQPRTASTLTRKLADLVHEAEAAGKDAPDYDLCR
                     VTVAHTNLFCVESKGIPRVEMPQLKGIATPGSKAAKLDAADRRGETDLSEHFLRHLEG
                     LGYKVVETVVPAADLRATQRELDGAKVSGMMHFIRHGGRIEGPPIWTTSDDYVVD"
     gene            complement(1165..2019)
                     /locus_tag="VIU37_02475"
     CDS             complement(1165..2019)
                     /locus_tag="VIU37_02475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012835.1"
                     /translation="MAGLHAIVARAREAGRANQPTSRKARAKTAKPRKPPKETVSYVS
                     GVRVKSRTLRDKPVTFGALGDAKDLIAEVDEAFGRVEGKYPALDPKGAKMRKFTGIYT
                     NSNHPDIDLFSRMALEHALEATVEKGNRENFLVLNDRENVRDDVLDEHHPAAEVGYLS
                     PAARDPLGRTLHEIGHLEANLAGVRPMQIVRALKKAGLIWEPDDGVTRGSNLSYYHTD
                     ALRDISKYAARGDPDEAFAELFAMVNHPDAFDAIPGFQTEAGRKEAKRQLDTFAEALN
                     SIVGQTVI"
BASE COUNT          289 a          722 c          709 g          370 t
ORIGIN      
        1 cgtccaccac gtagtcgtcg ctcgtcgtcc agatcggcgg cccctcgatc cgcccgccgt
       61 gccggatgaa gtgcatcatc cccgagacct tggcgccgtc tagctcgcgc tgagtagcgc
      121 ggagatcagc cgccggaaca acggtctcga cgaccttgta gccgagccct tcgaggtggc
      181 gaaggaaatg ctcggagagg tcggtctcgc cgcgccgatc ggcggcgtcg agcttggcgg
      241 ccttcgagcc cggcgtcgcg atgcccttca actgcggcat ctcgacccgc gggatgccct
      301 tcgactcgac gcagaaaagg ttggtatggg cgacggtgac ccggcagaga tcgtagtccg
      361 gcgcgtcctt gccagcggcc tcggcctcgt ggacgagatc ggcgagcttg cgagtcaggg
      421 tcgaggcggt acgcggctga tcgagttcaa cccgcttgcc ctgcgcgagc aactcggcgg
      481 cccggtccac gtcggcgccg acgtagatcg gctcgtcggg agtgaccgcg tggacgcgag
      541 cggtgcccgt ccactcctcg cgagccgcgc tcaccccggc gcttaccgac cgccaggtgc
      601 gatcgagcca gcggccccag gtcgggacgg cgccctcccc cttggtatcg ccgcgattgt
      661 ggagatcctg ccagcgccga aaggcccaga ggtagagggc gtcggcgtcg aagcggtggg
      721 ccgggtggcg ctcttgccgg aggtcagcgc ggagatcctc gatcgagcgg ttccatcgag
      781 cccgcccgat ccgctcgacg atgccggtct tgatcgcgcc cgcgatgctc tccatcgcaa
      841 gcccggcgcc gacgctggcg ccgtgacggc ggtgcccctt ggcgctgatc ttcgcgcgat
      901 cgagcacgcc gggatagcgc cggtcgagtt ccccgagcgg ggtggcgatc gccgacggga
      961 tcggacggac ggtggcgccc ttgcgccgga agcgcccgaa cgcatcgcgg ggatggagcg
     1021 actcgatcca gccgcgcagg ctcttgacga tcccgccctg cttcgcccgc tcgcgctcgg
     1081 cgaccacccg gttcaactcg gccagggtct cgaaatcgcc atcctcgacg agcatccgcc
     1141 gggtttcttc gagggtcggg atcgtcatat gaccgtctgc ccgacgatgc tattgagcgc
     1201 ctcggcgaag gtgtcaagct ggcgcttcgc ctctttgcgt ccggcctcgg tctggaatcc
     1261 ggggatcgcg tcgaaggcgt ccgggtgatt caccatcgcg aatagctcgg cgaacgcctc
     1321 gtcgggatca cctcgggccg cgtacttgga gatatcgcgc agcgcgtcgg tgtggtagta
     1381 ggacaggttg gagccacggg tcacgccgtc atcgggctcc cagatcaggc ccgccttttt
     1441 gagcgctctg acgatctgca taggccgaac ccccgcgagg ttcgcttcga ggtggccgat
     1501 ctcgtggagg gtgcgcccga gcggatcgcg agcggcggga ctgaggtagc cgacctcggc
     1561 ggcggggtgg tgctcgtcga gcacgtcgtc gcgcacgttc tcccggtcat tcaggacgag
     1621 aaagttctca cggttcccct tttcgaccgt cgcctccaag gcgtgctcta gcgccatccg
     1681 cgagaacagg tcgatatccg ggtgattcga gttcgtgtag atgccggtga acttccgcat
     1741 cttggcgccc ttcggatcga gcgccgggta cttgccctcg acccgcccga acgcctcgtc
     1801 cacctcggcg atcagatcct tcgcgtcccc gagcgccccg aaggtcaccg gcttgtcgcg
     1861 cagggtccgc gacttgaccc ggaccccgct cacgtagctc accgtttcct tcggcggctt
     1921 gcgcggcttg gccgtcttcg ctcgcgcctt gcggctcgtc ggctgattcg cgcgtccggc
     1981 ctcccgcgcc cgcgcgacga tcgcgtggag cccggccacc tgcccgaccg gcgactgatt
     2041 gcgctggacc cattcatcgg ggtcttcgac gtagtggagg ttcccgctgg
//
LOCUS       DATDDI010000173         1678 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_523682, whole genome shotgun sequence.
ACCESSION   DATDDI010000173 DATDDI010000000
VERSION     DATDDI010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523682"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1085
                     /locus_tag="VIU37_02480"
     CDS             <1..1085
                     /locus_tag="VIU37_02480"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6012836.1"
                     /translation="GSGRDRYSRDTVREDIIRSRADQVIVLFDAWPYAEQDPFKELPN
                     VTGWCPVDHLPVPPLSQAWMRQHRTVAMSRFGEAMLRAAGDIDLDYAPHGIEPVFHPT
                     PVAPAFGRPFREVTKVPADAFLVGIVAANIGTSIYDRKGFGDMFQALSVFMHEHPDAW
                     LYVHTQMQGYEGVPLEILASVTGLPPERVRFADQYALAKQAVTDEMMASIYTSFDVLL
                     ATSRGEGFGLPVIEAQACGVPAIVSNWTAQPELLGEPFDARRPGAQRRPSGWLVSADP
                     DYDPRQAAFFAKPSVREISLALDDAYAHRGDEAMRAAAIAKAAEYDADRVFETYWQPI
                     LAGLQEPAKVIPLNRQQRRAMARKSA"
     gene            1082..>1678
                     /locus_tag="VIU37_02485"
     CDS             1082..>1678
                     /locus_tag="VIU37_02485"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY6012837.1"
                     /translation="MTAIVTGSAGFIGSRLMERLPSAFGIDRATGPSVQQVDALPGSC
                     EVIYHLASPVGPVGVLGWAGRLASEVIECADIVASWARMYGCPLVFVSTSEVYGSGVE
                     SHESDDCHFGPEPSARQEYALAKLTAEVMLRNTAGLDVRIARPFNVAGPGQLGDGGFV
                     LPRFISQALAGEPLTVYPPGTQLRAFTHVDDVVDGLLLT"
BASE COUNT          231 a          632 c          563 g          252 t
ORIGIN      
        1 gcggttccgg tcgcgaccgg tactcgcgcg acacggtccg cgaggacatc atccgctcgc
       61 gggccgacca ggtcatcgtc ctcttcgacg cctggcccta cgccgagcag gatccgttca
      121 aggagctgcc gaacgtcacc ggctggtgcc cggtcgacca ccttccggtt cccccgctgt
      181 cgcaggcgtg gatgcgccag caccggacgg tcgcgatgag ccgcttcggc gaggcgatgc
      241 tccgggccgc gggcgacatc gacctcgact acgcgccgca cggcatcgag ccggtattcc
      301 acccgacgcc ggtcgctccg gccttcgggc ggccgttccg cgaggtgacg aaggtgccgg
      361 ccgacgcctt cctcgtcggc atcgtcgcgg cgaacatcgg gacctcgatc tacgaccgca
      421 agggcttcgg cgacatgttc caggccctgt cggtcttcat gcacgagcac cccgacgcct
      481 ggctctacgt ccacacccag atgcagggct acgagggcgt gccgctcgag atcctcgcct
      541 cggtgacggg actccccccg gagcgggtgc gcttcgcgga ccagtacgcg ctcgcgaagc
      601 aggccgtgac cgacgagatg atggcctcga tctatacgag cttcgacgtc ctgctcgcca
      661 ccagccgcgg cgagggcttc ggcctgccgg tcatcgaggc gcaggcgtgc ggcgtgccag
      721 cgatcgtgtc caactggacc gcgcaacccg agctcctggg cgagccgttc gacgcccgcc
      781 ggcccggcgc gcagcggcga ccgtcgggct ggctcgtctc ggccgacccc gactacgacc
      841 cgcgacaggc ggcgttcttc gccaagccct cggtccgcga gatcagcctg gccctcgacg
      901 acgcctacgc ccatcgcggc gacgaggcga tgcgggcggc ggccatcgcc aaggcggccg
      961 agtacgacgc cgaccgggtg ttcgagacgt actggcagcc gatcctcgcg ggcttgcagg
     1021 agcccgccaa ggtcatcccg ctcaaccgcc agcagcgccg ggcgatggcg aggaagtcgg
     1081 catgaccgcc atcgtcacgg gctccgcagg cttcattggc agccgcctca tggagcgcct
     1141 gccgagtgcc ttcggcatcg accgggccac gggcccgtca gtccagcagg tcgacgccct
     1201 gccgggctcg tgcgaggtca tctaccacct cgcctcgccg gtcgggccgg tgggcgtgct
     1261 cggctgggcc ggccgcctcg catccgaggt catcgagtgc gccgacatcg tcgcgagctg
     1321 ggcgaggatg tacggctgcc cgctcgtctt cgtctcgacc tccgaggtct acggctcagg
     1381 cgtcgagtcg cacgagtccg acgactgcca cttcggcccg gagccgtcgg cccgccagga
     1441 gtatgccctc gcgaagctca ccgccgaggt catgctccgc aataccgccg ggctcgacgt
     1501 gcggatcgcc cgcccgttca acgtcgccgg tccggggcag ctcggtgacg gcgggttcgt
     1561 cctgccgcgc ttcatcagcc aggccctcgc gggcgagccc ctgaccgtct acccgcccgg
     1621 cacgcaactg cgggcgttca cccatgtcga tgacgtcgtc gacgggctgc tcctgacc
//
LOCUS       DATDDI010000174         1960 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_606957, whole genome shotgun sequence.
ACCESSION   DATDDI010000174 DATDDI010000000
VERSION     DATDDI010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606957"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..456)
                     /locus_tag="VIU37_02490"
     CDS             complement(<1..456)
                     /locus_tag="VIU37_02490"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF013113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEY6012838.1"
                     /translation="MSDAPTTSDPAKRHSAALTDGPDRAGARAMLKAIGFTDEELARP
                     IIGVATTWIETMPCNFNQRRLAESVKAGVRAAGGTPMEFNTVSISDGVTMGTEGMKAS
                     LVSREVVADSIELVARGHMFDALVTLCACDKTIPASAIALVRIDRPGFLL"
     gene            complement(505..>1960)
                     /locus_tag="VIU37_02495"
     CDS             complement(505..>1960)
                     /locus_tag="VIU37_02495"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY6012839.1"
                     /translation="PIVLASLTGVPTARWRADRVLLAVNLVRAGAMLLTLVVIAESAP
                     AAVLFLFVGIEAGFGGMTRPLHMSMLPWLARTPGELVASNIASSAAEGLGTLLGPALA
                     GILLAISGPVGAAVAAVALMVGAVVAVGSIRVSIVRSAQAPPSVLDGLGGGLQAARRT
                     PAVRLVLIGLGLQTLVRGLLTVLLVVAAVELLGLGEPGVGTLQAAVGAGGFVGAVLAL
                     SLTARTAFSPTFAMSLALWGLPIAAIGIAHHPALAVGLLGIVGMSNAILDVTGFTILQ
                     RATPNASRVAVMGLVDSVAAATAALGGLLASALLAGLGIEGALVVTGAILPTTAAIIL
                     PSLRRAEAASTGNQATAHLLRADPLLQLLSLSVIEELAAVMRPIGYADGEVLLREGEA
                     GDDYLIVADGEVEVSQGGRVLRRLGPGHGVGEIALLRRVPRTATVRAIGPVEACALDG
                     DAFLSAITGAAHARRVADQIVDGHLRRSESSSPL"
BASE COUNT          298 a          720 c          725 g          217 t
ORIGIN      
        1 tagaaggaaa ccaggccggt cgatccgcac caacgcgatc gccgacgcgg ggatcgtctt
       61 gtcgcacgcg cacagcgtca cgagcgcgtc gaacatgtgg ccgcgcgcga cgagctcgat
      121 cgagtcggcg accacttcgc ggctgacgag cgaggccttc atcccctcgg tgcccatcgt
      181 cacgccgtcg ctgatcgaga ccgtgttgaa ctccatcggc gtgcccccgg ccgcgcggac
      241 gccggccttc accgattccg ccagccgccg ctggttgaag ttacagggca tcgtctcgat
      301 ccaggtcgtc gccacgccga tgatcggccg ggcgagctcc tcgtcggtga acccgatcgc
      361 cttgagcatc gcccgagcgc cggcccgatc cggcccgtcg gtcagggccg cggagtggcg
      421 cttggcggga tcggaggtcg tcggcgcgtc ggacatcgag ggcggtctcc ttgggtcggc
      481 cggcatcggc ggtcgggccc cagactacag cggcgacgac gactcggatc gacggaggtg
      541 accatcgacg atctggtcgg ccacgcgccg ggcgtgggcc gcgccggtga tcgccgagag
      601 gaacgcgtcg ccgtcgaggg cgcacgcctc gaccgggccg atcgcgcgga cggtggcggt
      661 ccgcggcacg cgccgaagca gcgcgatctc gccgacgccg tgccccggcc cgaggcggcg
      721 gaggacgcga ccgccctggc tgacctccac ctcgccgtcg gcgacgatca ggtagtcgtc
      781 gccggcctca ccctcgcgca acaggacctc gccgtcggcg tagccgatcg gtcgcatgac
      841 cgcggcgagc tcctcgatga ccgacaggga gaggagctgg agcagcgggt cggcccgcag
      901 caggtgcgcc gtggcctgat tgcccgtcga cgcggcctcg gcgcgccgga ggctcgggag
      961 gatgatggcc gccgtggtcg gcaggatcgc gcccgtgacc accagggcgc cctcgatgcc
     1021 gagacccgcc aggagcgcgg acgcgaggag ccccccgagg gccgccgtcg cggcagcgac
     1081 gctgtcgacg agccccatga ccgccacgcg cgaggcgttc ggggtggccc gctggaggat
     1141 cgtgaacccg gtcacgtcga ggatcgcgtt gctcatcccg acgatcccga gcagcccgac
     1201 ggccagcgcg gggtggtggg cgatcccgat cgccgcgatg ggcaggcccc acagcgccag
     1261 cgacatcgcg aaggtggggc tgaacgcggt gcgggcggtc aggctgagcg cgaggaccgc
     1321 gcccacgaac ccgccggccc cgacagccgc ctggagcgtt ccgacgccgg gctcacccag
     1381 gccgagcagc tcgaccgcgg cgaccacgag gagcaccgtc aacaggcctc gcacgagcgt
     1441 ctggaggccc agcccgatca ggaccaggcg gacggccggg gtccgacgtg ccgcctgcag
     1501 cccgccgccc aggccgtcga ggaccgacgg cggcgcctgg gccgaccgga cgatcgacac
     1561 gcggatcgat ccgaccgcga cgaccgcccc gaccatcagg gcaacggccg ccaccgcggc
     1621 gccgaccggc cccgagatgg cgagcaggat gccggcgagc gccggtccga ggagcgttcc
     1681 gagaccctcg gcggcactcg acgcgatgtt cgaggcgacc agctcgcccg gggtccgggc
     1741 gagccacggg agcatgctca tgtggagcgg gcgggtcatt ccgccgaagc ccgcctcgat
     1801 cccgacgaag aggaagagga ccgccgccgg ggccgattcg gcgatcacga cgagcgtcag
     1861 cagcatcgcg cccgcccgga ccaggttgac ggccagcagc acccggtccg cgcgccagcg
     1921 tgccgtcggg acgccggtca gcgacgccag gacgatcggc
//
LOCUS       DATDDI010000175         1631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_606963, whole genome shotgun sequence.
ACCESSION   DATDDI010000175 DATDDI010000000
VERSION     DATDDI010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606963"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..1020)
                     /locus_tag="VIU37_02500"
     CDS             complement(157..1020)
                     /locus_tag="VIU37_02500"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6012840.1"
                     /translation="MEFEEIHVPVPGGEVFATRRGAEPPGRPPVLLLHGGPGMGAEYL
                     VGLVKALDGVIDGVLPQQRGLEPSTLEGPRDVETHVADEIAVLDRLGWDRAWLMGHSW
                     GGLLAMHLAVAHPDRVRGLVLFDTLGAIPDGGRAALSANLVARLRPPDRARLDAFMEL
                     QQSGAEEPTLVAQILTTLWPSYTYVYDEVPAPRPLRLEVPLPDVPDTMASVEAHWAAG
                     TLERGLPRLDLPTLLIHGVADPLPSSASVETAALIPGARLELLERCGHFPWLERRDDV
                     RAMVEAFLAAH"
     gene            1084..>1631
                     /locus_tag="VIU37_02505"
     CDS             1084..>1631
                     /locus_tag="VIU37_02505"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY6012841.1"
                     /translation="MSLPVGDVTFLFSDIEGSTRLARELGAERWIALLRDHDSAAATA
                     VTSAGGTVVKHEGDGMFAVFADPRSAAAAAIELSRAASRFGPEAGGPIRVRIGIHSGA
                     GMVTESGLDYVGLDVHYAARLAAAGNGGQILVSDTAARRLGEAPPVGHLVDEGFHRLR
                     DFDDARRIHRLVVAGTADDDRAL"
BASE COUNT          239 a          576 c          606 g          210 t
ORIGIN      
        1 ggccaggcag ataccgttgc cgtgtcgcac cattaggcgc ccggtcgcgc ccgatggctg
       61 cggaccatcg gtaccggtcc cctgcgacaa atggtccggc gatgcgtggc gccggaccgg
      121 catcggcgtt cgcccgagtc cgcgccggcg gtggtctcag tgtgcggcga ggaacgcctc
      181 caccatcgcg cggacgtcgt cgcggcgctc gagccacggg aaatggccgc agcgctccag
      241 gagttccagg cgggcgcccg ggatcagagc cgcggtctcg accgaggcgc tggacggcaa
      301 cggatcggcg acgccgtgga tgagcagcgt cggcaggtcg agcctcggaa gcccgcgttc
      361 cagcgtgccg gccgcccaat gcgcctccac cgacgccatc gtgtccggga catccggcag
      421 tgggacctcc aaccggagcg ggcggggcgc cggcacctcg tcatagacgt aggtgtagga
      481 cggccagagc gtggtcagga tctgggcgac gagcgtgggt tcctcggcac cggactgctg
      541 gagctccatg aacgcatcca ggcgggctcg gtccggcggc cggaggcggg cgacgagatt
      601 ggccgacagt gccgcccgcc cgccgtcggg gatcgccccg agcgtgtcga acagcacgag
      661 cccccggacg cgatccggat gggcgacagc gaggtgcatc gccagcagcc cgccccacga
      721 gtgccccatc agccaggccc ggtcccagcc gaggcggtcg aggacggcga tctcgtcggc
      781 gacgtgcgtc tcgacgtcgc gcggaccctc cagggtgctc ggctcgaggc ctcgctgctg
      841 tggcaggacg ccgtcgatca cgccgtccag cgccttgacg aggccgacga ggtactcggc
      901 gcccatgccc ggcccgccgt gcaggagcag gacgggcggc cgtcccggtg gctccgcgcc
      961 gcgccgcgtg gcgaagacct cgccacccgg caccggcacg tggatttcct cgaactccac
     1021 cgacaacctc cacgagcgta cgtgcgccgg ggagcgcctg gcgctgatgc gaagatagcg
     1081 aacatgagcc tccccgtcgg cgacgtcacg ttcctgttca gcgacatcga ggggtcgacg
     1141 cggctggcga gggagctcgg agcggagcga tggatcgccc tcctgcgcga ccacgacagc
     1201 gcggctgcga ccgcggtcac gtcggccggt ggaacagtgg tcaagcacga gggcgacggc
     1261 atgttcgcgg tgttcgcgga tcctcgcagc gccgccgcgg ccgccataga gctgagccgg
     1321 gcggcctctc gcttcggacc ggaggccgga ggcccgatcc gcgtccggat cggcatccac
     1381 agcggcgccg ggatggtgac cgagagcggg ctcgactacg tcgggctgga cgtccactac
     1441 gcggcacggc tggcggccgc tggcaacggc ggccagatcc tcgtttccga cacggccgct
     1501 cggcggctgg gcgaggcacc gccggtcggc cacctcgtgg acgaagggtt ccatcggctg
     1561 cgtgacttcg acgatgcccg gcggatccac cggctggtcg tggccgggac ggccgacgac
     1621 gatcgagccc t
//
LOCUS       DATDDI010000176         1558 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_523741, whole genome shotgun sequence.
ACCESSION   DATDDI010000176 DATDDI010000000
VERSION     DATDDI010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523741"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..1446)
                     /gene="glyA"
                     /locus_tag="VIU37_02510"
     CDS             complement(103..1446)
                     /gene="glyA"
                     /locus_tag="VIU37_02510"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEY6012842.1"
                     /translation="MSISVPRGLALESIADVDPVLWDAMLGERRRQHDKIELIASENY
                     VSAAVMEAQGSWLTNKYAEGLPGKRYYGGCEFVDIAERLAQERALALYPGAEHVNVQP
                     HSGAQANMAAYFSVLDPGDRILGMNLAHGGHLTHGMALNFSGRLYEVHAYGVRQDTER
                     IDYDAMAAQAREVRPKVIVGGASAYSRTWEFERMAEIAHSVGAILFVDMAHIAGLVAA
                     GVHPSPFPFADLVTTTTHKTLRGPRGGLLFSRRDLAPGLDAGRFPAVKGGAAAGALAA
                     SVDRNVFPGTQGGPLMHVIAGKAVALRLAAGEPFREDQRRTVENARVMAETLAAEGAR
                     VVSGGTDNHLMLVDVTPLGVTGKEAEHLLDEIGITVNKNAIPFDTLPPNTASGIRIGT
                     PATTSRGFGTDEMRTVGRIIIEAIRTRSEPAAQARLAGEVREIVEQFPVPGLPAA"
BASE COUNT          205 a          570 c          551 g          232 t
ORIGIN      
        1 cccaggaacg cgacgacgat cgagccgatg gcgccaccga cgtcggcgat cagggtcaca
       61 gcggccggtc ctccgacacg cgcgccgggc cgctgcggtg gttcacgccg ccggcaggcc
      121 cgggacgggg aactgttcca cgatctcgcg aacctcgccg gccaggcgcg cctgcgcagc
      181 cggctcggac cgggtccgaa tcgcctcgat gatgatccgc ccgaccgtcc gcatctcgtc
      241 ggtcccgaac ccgcgcgacg tcgtcgccgg cgtcccgatc cggatcccgg aggcggtgtt
      301 gggcggcagg gtgtcgaacg ggatcgcgtt cttgttgacc gttatcccga tctcgtcgag
      361 caggtgctcg gcctccttgc cggtcacccc gagcggggtc acgtcgacga gcatgaggtg
      421 gttgtcggtc ccgccggaca cgacccgggc gccctccgcg gcgagggtct cggccatgac
      481 ccgggcgttc tcgacggttc ggcgctggtc ctcgcggaac ggttccccgg cggccagcct
      541 gagggccacg gccttgcccg cgatcacgtg catgagcggt ccgccctggg tcccggggaa
      601 gacgttccgg tcgaccgagg cggccagcgc cccggccgcc gcgccaccct tgaccgccgg
      661 gaagcggccg gcgtcgagcc cgggcgccag gtcgcgccgg ctgaacagca gcccgccacg
      721 cggcccgcgg agcgtcttgt gcgtcgtcgt cgtgaccagg tccgcgaacg ggaacgggct
      781 cgggtggacg ccggccgcca ccagtcccgc gatatgagcc atatcgacga acaggatcgc
      841 cccgacggaa tgggcgatct ccgccatccg ctcgaactcc caggtccgcg agtaggcgga
      901 cgcgcccccc acgatcactt tcggacggac ctcgcgcgcc tgggcggcca tcgcgtcgta
      961 gtcgatgcgt tcggtgtcct ggcggacgcc gtaggcgtgg acctcgtaga gccggcccga
     1021 gaagttgagg gccatgccgt gggtcaggtg cccgccgtgg gcgaggttca tgcccaggat
     1081 gcggtcgccg ggatcgagga cgctgaagta ggccgccatg ttggcctggg cgccggagtg
     1141 gggctggacg ttgacgtgct cggcgcccgg gtagagggcc agcgcgcgct cctgggccag
     1201 ccgctccgcg atgtcgacga actcacagcc gccgtagtag cgctttccgg gcaacccctc
     1261 ggcgtacttg ttggtcagcc acgagccctg ggcctccatg accgccgcgg agacgtagtt
     1321 ctcgctggcg atcagctcga tcttgtcgtg ctgccggcgc cgttcgccca gcatggcatc
     1381 ccacaggacc gggtccacgt ccgcgatgga ttcgagcgcc aggcccctcg ggacggagat
     1441 gctcatggtg tcgccgactc cttcctcacg ctccgcgagt ccctcggccg ccgccggccc
     1501 tccgccgacg ccccacgggg gtatcttccc acgaacgcgt cggcggacgc cgtcgccc
//
LOCUS       DATDDI010000177         4454 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_24400, whole genome shotgun sequence.
ACCESSION   DATDDI010000177 DATDDI010000000
VERSION     DATDDI010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4454
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24400"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..535)
                     /locus_tag="VIU37_02515"
     CDS             complement(<1..535)
                     /locus_tag="VIU37_02515"
                     /inference="COORDINATES: protein motif:HMM:NF022112.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GerMN domain-containing protein"
                     /protein_id="HEY6012843.1"
                     /translation="MDRRVWFRLVVPILIAALAGACEPSGDAGSRPPAPTSSTVPAES
                     AAPTGSAAPSADASTVPATPIPTPSTTVRVYFYLGGQPGSDGLVPVERSVAGGDTVTG
                     AMTALLAGPTSEEAGDRTITSAIPEGSRLLGLTVADGVATVDLSREYESGGGSLSMFV
                     RLGQVVFTLTQFPEITSV"
     gene            complement(549..1805)
                     /locus_tag="VIU37_02520"
     CDS             complement(549..1805)
                     /locus_tag="VIU37_02520"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012844.1"
                     /translation="MQLPDVRVPRIDPMRSLGLLSVAHAVNHAQAVILPLIYLKVIDE
                     FGVSVQTIAFLAAIGSFSSGMVQLSYAALTRFISRRRLLGLGGILFGGGFAAQALSGG
                     FLTFALPNILSRIGGSPQHPVGNGLLAEQFPPERRGFAISAHIAGGNVGTVIIALIGV
                     PLIAAVGWRGASVAIGLPAIAIAIAILLLVRERGTDRAAAVAEGTVRSAFKRILRDRD
                     LLWLYLTSVLGGGGRGLGVVNLFALIYMTRVLGLGENVSGLMYGALIVFSVPMPLIAG
                     WLSDRVGRKPLIVGVYVGGAVGFVVFLLAGSSIPLLWVGIVLMGLFSFAESPQLQALL
                     ADIAPPSTRDASYALYFTMAFGVGSLWTAVYGEIIDRAGEPTGLPIVFGLMAVTFVLA
                     AVFTLPIRAEERARANALHEATLGGE"
     gene            1944..2333
                     /locus_tag="VIU37_02525"
     CDS             1944..2333
                     /locus_tag="VIU37_02525"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6012845.1"
                     /translation="MPTVLIVDDEQHIRLLIEQTLEELEDEGVELLTAADGDEAVSVV
                     EHQHPDLVFLDVMMPRRSGFEVCRVIKQELGLAGTYVVLLTAKGQAYDREQGMAAGAD
                     LYMTKPFDPDELLRRAREVLGLRAGPG"
     gene            2333..3142
                     /locus_tag="VIU37_02530"
     CDS             2333..3142
                     /locus_tag="VIU37_02530"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY6012846.1"
                     /translation="MDTPELRRLIVRHRHVAPMLSVLLAGTDARLTITALDGEVILDR
                     QTGTAPADAPVERHPIVIEAQTVGWVEGPRPAGSIAAVLSYAGARETDKRALAREALD
                     RYRELNLIYDLADQIGATLEIDAVARVAVAEAGRLPSGGIGFVLLREPEGERLVARPA
                     GEGAFEAVAGRDPGAGILGAILAGDPEIVNDIAADPRATDSERQFASLVAAPLRVRGE
                     RIGVIGTISREPIEYHASDLRLLTAIASLAAPTFEQAAVHETVVRAARAGD"
     gene            3165..>4454
                     /locus_tag="VIU37_02535"
     CDS             3165..>4454
                     /locus_tag="VIU37_02535"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY6012847.1"
                     /translation="MDRRAVALGIVGSAVVLVYLVGRGPAWDSVAVVLAALLPAGLVL
                     YGGAARGRSTALRAANLRTEAAYRRSEDANRDLQERIAELMTLNELAAAAGSTLDRDE
                     LLDGSLQAVIRHLRFDRALILLADDTRGVLGGGRSVGGSAEMTAAVAELELPLDQRVS
                     QLVQLFHADGPLLFRDVDEDPDERNRAFAAMMEVTSFLGTPLVSKGRTVGILAVDNRA
                     SGRDVRPGDGPLLYTVGSLIAAAIENARLYEEVESQKEALERRVVERTAALAAAIEEA
                     QAARVAAEAASASKTAFLSNVSHELRTPLTSVVGFSKLIRRRLDEAIFPAVPPGDARR
                     DRQMRQISDNLGIIVEEGERLTALINDTLDLAKIEAGRMEWRRVPVDVGELVTRGLAA
                     TSSLFAHAGLELATSVEPDLPILEGDRDRLLQVVINLV"
BASE COUNT          661 a         1568 c         1626 g          599 t
ORIGIN      
        1 cgacggacgt gatctccggg aactgcgtca gcgtgaagac gacctggccg agccggacga
       61 acatcgagag gctgccgccg cccgattcgt actcacgcga caggtcgacg gtcgccacgc
      121 cgtcggcgac ggtcaggccg agcagccggc tgccctccgg gatggcggac gtgatcgtcc
      181 ggtcgcccgc ctcctcggag gtcggtccgg ccagcagggc ggtcatggcg cccgtgaccg
      241 tgtcgccgcc ggccacgctc cgctcgaccg gaaccaggcc gtcgctgccc ggctggccgc
      301 ccaggtagaa gtagacccgc accgtggtgg agggcgtcgg aatgggtgtc gccgggaccg
      361 tgctcgcgtc ggcggagggc gcggcgctgc cggtcggtgc cgcgctctcg gccgggaccg
      421 tgctcgacgt cggcgccgga ggcctggatc cggcatcgcc ggatggctcg cacgcgccgg
      481 ccagtgcggc gatcagtatc gggacgacca accggaacca gacgcgtcgg tccatgaccg
      541 tttgcctctt attcgccgcc gagggtcgcc tcgtgcagcg cattcgcccg ggcgcgctct
      601 tcggcgcgga tcgggagcgt gaagaccgcc gccaggacga aggtgacggc catcagtccg
      661 aagacgatcg gcaggcccgt tggttccccg gcccggtcga tgatctcgcc gtagaccgcg
      721 gtccacagcg accccacccc gaacgccatc gtgaagtaga gcgcgtatga cgcgtcgcgc
      781 gtggacggtg gcgcgatgtc ggccagcaac gcctggagct gcgggctctc ggcgaagctg
      841 aacagcccca tcagcacgat gccgacccac agcagcggga tcgacgagcc cgccagcagg
      901 aagaccacga acccgacggc cccgccgacg tacacgccga cgatcagcgg cttgcgaccg
      961 acgcggtcgg acagccagcc ggcgatcagc ggcatcggca ccgagaagac gatcagggcg
     1021 ccgtacatca ggcccgacac gttctctccg agcccgagca cccgggtcat gtagatcagc
     1081 gcgaacaggt tgacgacccc gaggccgcga ccgccgccgc ccagcaccga cgtgagatac
     1141 agccataaca ggtcccggtc gcgcaggatc cgcttgaacg ccgaccgcac ggttccctca
     1201 gccacggcgg cggcccggtc cgtgccgcgc tcgcggacga gcagcaggat ggcgatggcg
     1261 atggcgatgg cgggcagccc gatcgccacg gaggcaccgc gccagccgac ggcggcgatc
     1321 agcgggacgc cgatgagcgc gatgatcacc gtgccgacat tgccgcccgc gatgtgggcg
     1381 ctgatggcga acccgcgccg ctcgggtggg aactgctcgg ccagcagccc gttgccgacc
     1441 gggtgctgcg gcgagccgcc gatgcgcgac aggatgttcg gcagcgcgaa cgtcaggaac
     1501 ccgccggaca gggcctgcgc ggcgaacccg ccgccgaaca ggatcccgcc gagaccgagc
     1561 agccggcgcc gcgagatgaa ccgggtcagt gccgcgtagc tgagctgcac catgcccgac
     1621 gagaagctcc cgatcgccgc caggaaggcg atcgtctgga cgctcacgcc gaattcgtcg
     1681 atcaccttga ggtagatcag cgggaggatg acggcctgcg cgtggttgac cgcgtgcgcc
     1741 acggacagga gcccgagaga acgcatcggg tcgatcctcg ggacgcgcac atcggggagc
     1801 tgcatccgcg tatggtgccg catcgttggc ctacctcgtt gggccaacgc gtcggttgcg
     1861 cggaccggtc gtttccggca tcgtggtgcg accgtcgaac cgccgcagtc tgtggcgtcg
     1921 agccgcgcga aggggcctca tccatgccga ccgtcctcat cgtcgacgac gagcagcaca
     1981 tccggctgct catcgaacag acgctcgagg agctcgagga cgagggcgtc gagctgctga
     2041 ccgcggcaga cggtgacgag gccgtgagcg tggtcgagca ccagcacccg gatctcgtct
     2101 tcctcgacgt gatgatgccc aggcgcagcg ggttcgaggt ctgccgcgtg atcaagcagg
     2161 agctcggcct ggccggcacg tacgtcgtgc tgctgacggc gaagggccag gcgtacgacc
     2221 gcgaacaggg catggccgcg ggcgcggacc tgtacatgac caagccgttc gatcccgacg
     2281 agctgctgcg gcgcgctcgc gaggtgctcg gcctccgggc gggtcccggc tgatggacac
     2341 gcccgagctc cggcggttga tcgtccgcca ccggcacgtg gccccgatgc tgtcggtgct
     2401 gttggccggc acggacgcgc gcctgacgat caccgcgctc gacggagagg tcatcctcga
     2461 ccgccagacc gggacggcgc cggcggacgc cccggtcgag cggcacccga tcgtcatcga
     2521 ggcacagaca gtcggctggg tcgagggtcc gcggcccgcc ggttcgatcg ccgcggtcct
     2581 gagctacgcc ggcgcgcgcg agaccgacaa gcgagcgctg gctcgcgagg cgctcgaccg
     2641 ctatcgcgag ctcaacctga tctacgacct ggcggaccag atcggcgcga cgctggagat
     2701 cgacgcggtg gcccgggtcg ccgtggcgga ggcgggtcgc ctgccgtcgg gcgggatcgg
     2761 tttcgtcctg cttcgcgagc ctgagggcga gcggctcgtc gcgcggccgg ccggcgaggg
     2821 ggcgttcgag gcggtggccg ggcgcgaccc gggcgccggg atcctcggag cgatcctggc
     2881 cggggacccg gagatcgtga acgacatcgc ggccgatccc cgggcgaccg attcggagcg
     2941 ccagttcgcg tcgctcgtgg cggctccact ccgcgtccgt ggcgagcgga tcggggtcat
     3001 cggcacgatt tcgcgcgaac cgatcgagta ccacgcctcg gacctgcggc tgctgaccgc
     3061 catcgcctcg ctggccgcgc ccacgttcga acaggcggcg gtgcacgaaa cggtcgtccg
     3121 ggcagctcgc gccggcgact gagccgcacg tccagccacc gatcgtggat cgacgcgcgg
     3181 tcgcgctcgg gatcgtcggg tcggccgtcg tcctcgtcta cctggtgggc cggggcccgg
     3241 cctgggactc ggtcgccgtg gtcctcgccg cgctcttgcc ggccggcctc gtcctgtacg
     3301 gcggcgcggc gcgcggccgg tccaccgccc tccgggcggc caacctgcgg accgaggccg
     3361 cctaccggcg ctcggaggat gcgaaccggg acctgcagga gcggatcgcg gagctgatga
     3421 cgctcaacga gctggccgcc gcggccggtt ccacgctcga tcgcgacgag ctgctcgacg
     3481 gctcgctcca ggccgtgatc cggcatctcc gcttcgatcg tgcgctcatc ctgctcgccg
     3541 acgacacgcg cggcgtgctc ggcggcggtc gatcggtcgg tggcagcgcg gagatgacgg
     3601 ccgcggtggc cgagctcgag ttgccgctcg accagcgcgt ctcgcagctc gtccagctct
     3661 tccacgctga cgggccgctg ctgttccgcg acgtggacga ggacccggac gaacgcaacc
     3721 gtgccttcgc cgcgatgatg gaggtcacgt cgttcctcgg aacgccgctc gtctccaagg
     3781 gccggacggt cgggatcctg gcggtcgaca accgggcctc ggggcgtgac gtccggccgg
     3841 gcgacggtcc cctgctctac accgtgggca gcctgatcgc ggctgccatc gagaacgccc
     3901 ggctgtacga ggaggtcgaa tcccagaagg aggcgctcga gcggcgggtc gtcgaacgga
     3961 ccgcggcgct ggccgcggcg atcgaggagg cgcaggccgc gcgggttgcg gccgaggccg
     4021 catccgcgag caagaccgcc ttcctgtcga acgtcagcca tgagctgcgc acgccgctca
     4081 cctcggtggt cggcttctcg aagctgatcc gccggcgtct cgacgaggcg atcttccctg
     4141 cggtgccgcc cggcgacgcc aggcgcgacc gccagatgcg ccagatctcg gacaacctcg
     4201 ggatcatcgt cgaggagggc gagcgcctga cggccctgat caacgacacc ctggacctgg
     4261 ccaagatcga ggccggccgg atggagtggc ggcgggtgcc ggtggacgtg ggcgagctgg
     4321 tcacccgggg gctggcggcg acctcctcgc tcttcgccca cgcgggcctg gagctggcga
     4381 cgtcggtcga acccgacctg ccgatcctgg agggcgaccg cgaccggctc ctccaggtgg
     4441 tcatcaacct ggtc
//
LOCUS       DATDDI010000178         2471 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_357266, whole genome shotgun sequence.
ACCESSION   DATDDI010000178 DATDDI010000000
VERSION     DATDDI010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357266"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..677)
                     /gene="rplC"
                     /locus_tag="VIU37_02540"
     CDS             complement(66..677)
                     /gene="rplC"
                     /locus_tag="VIU37_02540"
                     /inference="COORDINATES: protein motif:HMM:TIGR03625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEY6012848.1"
                     /translation="MGIGLIGRKVGMTQVFQEDGTMVAVSVVAIQPNTVTRLRTPERD
                     GYTAVQFGTEVVDKLSKPETGQLKDLPKVKTIREFRVDSVDDYQVGQKVVLGDMFAAG
                     DEVDVTGVSKGKGTAGVIKRHNFRRGPKTHGSDHHRAPGSIGPGTTPGRVYRGLRMAG
                     HMGDERVTVKKVRVIRTDPERNLLLVKGTLPGARGALILVKKA"
     gene            complement(677..985)
                     /gene="rpsJ"
                     /locus_tag="VIU37_02545"
     CDS             complement(677..985)
                     /gene="rpsJ"
                     /locus_tag="VIU37_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013434780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEY6012849.1"
                     /translation="MAKQRIRIRLKAYDHRLLDQSAAQIVETAQRTGADVVGPVPLPT
                     RIEKFTVLRSPFIDKDSREQFEIRTHKRLVDILDPSSKTVDALMRLSLAAGVDIEIKM
                     "
     gene            complement(990..2186)
                     /gene="tuf"
                     /locus_tag="VIU37_02550"
     CDS             complement(990..2186)
                     /gene="tuf"
                     /locus_tag="VIU37_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEY6012850.1"
                     /translation="MAKKKFERTKPHVNIGTIGHIDHGKTTLTAAITKYLALKGEATY
                     RAFDTIDNAPEEKARGITIAIAHVEYQTDARHYAHIDCPGHADFIKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLARQVEVPYIVVFLNKVDMVDDPELLDLVELEVRELLTK
                     NNFPGDDVPVIRGSALKALEAPDDPTNEAYKPIQELMDAVDNYIPTPERAVDKPFLMA
                     VEDVFGIKGRGTVPTGRIERGIVKVGDEIEIVGVHATRKAVVTGVEMFQKTLDQGQAG
                     DNVGCLLRGIERDDIERGQVLAKPGSVTPHTKFVARVYVLTKEEGGRHTPFYNGYRPQ
                     FYLRTTGVTGAIGLPDGAEMIMPGDNVDMTVELITPIALETGQRFAIREGGRTVGAGS
                     ITTIVA"
     gene            complement(2231..>2471)
                     /gene="fusA"
                     /locus_tag="VIU37_02555"
     CDS             complement(2231..>2471)
                     /gene="fusA"
                     /locus_tag="VIU37_02555"
                     /inference="COORDINATES: protein motif:HMM:NF012882.4"
                     /note="EF-G; promotes GTP-dependent translocation of the
                     ribosome during translation; many organisms have multiple
                     copies of this gene; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEY6012851.1"
                     /translation="FMGDVIGDLNSRRGQVEGMESRGTTTVVRAAVPLAQMFGYATDL
                     RSMTQGRGSYSMELSHYAEVPASIAAELVQKSKVS"
BASE COUNT          331 a          811 c          868 g          461 t
ORIGIN      
        1 tcgctgagct cgacgctgcc gacggtcttg ccggtccgat cgtagaggct ggtctgcggc
       61 atcggtcagg ccttcttcac gaggatcagc gcgccgcggg cgccggggag cgtccccttg
      121 accagcagca gattgcgctc gggatcggtg cggatgacgc gcaccttctt gacggtgacc
      181 cgctcgtcgc ccatgtggcc ggccatgcgc aggccgcggt agacgcgacc cggcgtggtg
      241 cccggaccga tcgagccggg tgcccggtgg tggtcggagc cgtgggtctt gggcccgcgc
      301 cggaagttgt ggcgcttgat cacgccggcg gtgcccttgc ccttcgagac gccggtcacg
      361 tcgacctcgt cgccggcggc gaacatgtcg ccgaggacga ccttctggcc gacctggtag
      421 tcgtccacgc tgtcgacccg gaactcgcgg atcgtcttga ccttgggcag gtccttgagc
      481 tggccggtct cgggcttgga cagcttgtcc acgacctcgg tcccgaactg gacggcggta
      541 tagccatcgc gctcgggcgt gcggaggcgc gtgacggtat tcggctggat ggcgaccacg
      601 gagacggcga ccatggtgcc gtcctcctgg aagacctggg tcatgccgac cttgcggccg
      661 atgagtccga ttcccatcac atcttgatct cgatgtcgac gcccgcagcc agcgagagtc
      721 gcatcagggc gtccacggtc ttggacgagg ggtcgaggat gtcgacgagc cgcttgtgcg
      781 tgcggatctc gaactgctcc cggctgtcct tgtcgatgaa cggggaacgc aggacggtga
      841 acttctcgat ccgggtcggg agcgggaccg ggccgaccac gtcggcaccg gtccgctggg
      901 ccgtctcgac gatctgggcc gccgactggt cgagcagccg gtggtcgtag gccttgaggc
      961 ggatccggat acgctgcttg gccatcgagc taggccacga tcgtggtgat cgagcccgcg
     1021 ccgacggtcc ggccaccctc gcggatggcg aagcgctggc cggtctcgag cgcgatgggg
     1081 gtgatcagct cgacggtcat gtccacgttg tcgccgggca tgatcatctc ggcgccgtcg
     1141 gggaggccga tcgcgccggt cacgcccgtc gtccggaggt agaactgggg ccggtagccg
     1201 ttgtagaacg gcgtgtggcg gccgccctcc tccttggtca ggacgtagac gcgggcgacg
     1261 aacttggtat gcggcgtgac ggagccgggc ttggccagga cctggccgcg ctcgatgtcg
     1321 tcgcgctcga tgccgcgcag caggcagccg acgttgtcgc cggcctggcc ctggtcgagc
     1381 gtcttctgga acatctcgac gccggtcacg accgccttgc gagtggcatg cacgccgacg
     1441 atctcgatct cgtcgccgac cttgacgatg ccgcgctcga tccggccggt cggcacggtg
     1501 ccgcgtccct tgatcccgaa cacgtcctcg acggccatca ggaacggctt gtcgacggcc
     1561 cgctcggggg tcgggatgta gttgtcgacg gcgtccatca gctcctggat gggcttgtac
     1621 gcctcgttcg tgggatcgtc cggggcctcg agcgccttga gcgccgaccc gcggatgacc
     1681 ggcacgtcgt cgccggggaa gttgttcttg gtcagcagct cgcggacctc gagctcgacc
     1741 aggtcgagca gctcggggtc gtcgaccatg tcgaccttgt tgaggaacac gacgatgtac
     1801 gggacctcga cctggcgagc cagcaggatg tgctcgcggg tctgcggcat cggcccgtcg
     1861 gtcgccgcca ccaccaggat cgccccgtcc atctgggcgg cgccggtgat catgttcttg
     1921 atgaagtcgg cgtggcccgg gcagtcgatg tgcgcgtagt ggcgcgcatc ggtctggtat
     1981 tcgacgtggg cgatcgcgat cgtgatgccg cgcgccttct cctcgggcgc gttgtcgatc
     2041 gtgtcgaagg cgcggtacgt cgcctcgccc ttcagcgcga ggtacttcgt gatcgccgcg
     2101 gtgagcgtcg tcttgccgtg gtcgatgtgg ccgatcgtgc cgatgttgac gtgcggcttg
     2161 gtccgctcga acttcttctt cgccatctgt cagaccgctc cctggctcct cgctggtctc
     2221 acgtggaccg tcacgaaacc ttcgacttct ggacgagctc cgcggcgatg ctcgccggga
     2281 cctccgcgta gtgggacagc tccatggagt agctcccgcg accctgggtc atcgaccgca
     2341 ggtccgtcgc gtagccgaac atctgggcga gcgggaccgc cgctcgcacg accgtcgtcg
     2401 taccgcgcga ctccatcccc tcgacctggc cacgccggct gttcagatcg ccgatgacgt
     2461 cgcccatgaa c
//
LOCUS       DATDDI010000179         3750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_690371, whole genome shotgun sequence.
ACCESSION   DATDDI010000179 DATDDI010000000
VERSION     DATDDI010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690371"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /gene="rsfS"
                     /locus_tag="VIU37_02560"
     CDS             <1..243
                     /gene="rsfS"
                     /locus_tag="VIU37_02560"
                     /inference="COORDINATES: protein motif:HMM:TIGR00090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEY6012852.1"
                     /translation="DYFVICSGGSERQLEAIASGIIGSLRDERTRPIGREGTAASHWV
                     LVDFGSVIVHIFTPPERDYYGLEKHWSEGRTILRVQ"
     gene            370..624
                     /locus_tag="VIU37_02565"
     CDS             370..624
                     /locus_tag="VIU37_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012853.1"
                     /translation="MSSVRDRCPACSRRLITTRFDTTFRLPDRTERLCFGIPGGLCED
                     CSQLYIDPDLIELLDLGEGRCVFAIESDLVVQEQAWSAAD"
     gene            complement(807..1850)
                     /gene="holA"
                     /locus_tag="VIU37_02570"
     CDS             complement(807..1850)
                     /gene="holA"
                     /locus_tag="VIU37_02570"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEY6012854.1"
                     /translation="MTDPALAYYWGDDDLGASRAVDRLQSALAADTGVPLERWEIRGD
                     RNRAGEQIAQLHERLATPVMFGGGALAVVTNPGSLAMTAEHRSSLLAAIASLAPGNAL
                     VLLDASQSGAKAPSQKRLADAVAAAGGSVRKFDSPRRGALAGWIEAEARERGLELAAG
                     AAKALAERVGGFVDLNDVERRHQTRIASTELDKLALYRGAAPITVDDVQALVAEAVPA
                     SVWAFTDAIGERRAQAAVDLLERLLEDTPEPVLLAVLHRRVRELLELGDRLAAGERLP
                     AAAKAMGIASDYRAQTLATQARAWSTAELAEALDGLVELDAMVKGAPGAGQDEAQRRL
                     SFSLWLMDHVART"
     gene            complement(1847..2494)
                     /locus_tag="VIU37_02575"
     CDS             complement(1847..2494)
                     /locus_tag="VIU37_02575"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6012855.1"
                     /translation="MTVPGRVEAASLLLSLDPPAWFVRHARAVAEVAAWLAARIESRG
                     VAVDRRLVEAAALLHDVDKALPAGDPARDLPHGEGSAAWLTRAGHAELSRAVAAHPVT
                     RLLDGEAYRRWAAFASREERMVAYADKRAGQRLESMDARFESWRRRYGAPAADGRDAA
                     RDDGAWRSVRVRADRLEADVCRAADVAPWEVRRLAWTGSAIRSARRAAGTDATPS"
     gene            2907..3710
                     /locus_tag="VIU37_02580"
     CDS             2907..3710
                     /locus_tag="VIU37_02580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012856.1"
                     /translation="MGNLEQVDARQALGEEARVDRLLDIAHQQEAARPGLSEQDHRHV
                     VDAGAAVGRFRRDLAPDRPQDPQGDLVDLQPIAARDDAVDRCRGSGQPGEPGCVTGPG
                     ADHARFEDAADAIPIEQHRQAGDVILVGVAEDQRVDPPIPGRDVAVERHQQAVRIGAA
                     VDQQPSAAGALHEDAVALADVEDRDPWVRCGPSDDDATDDGDRDDECQRRGPLGGATG
                     RMRRATGRPGGRRGGDRTRDEPGSPVTPASAPPGQPGQSADRDRGGEKI"
BASE COUNT          483 a         1359 c         1411 g          497 t
ORIGIN      
        1 gactacttcg tgatctgctc gggcgggtcc gagcgtcagc tcgaggcgat cgccagcggg
       61 atcatcggca gcctgcgcga cgaacgcacc cgcccgatcg gtcgcgaggg caccgcggcg
      121 tcgcactggg tgctggtcga cttcggctcg gtgatcgtcc acatcttcac tccgcccgag
      181 cgcgactact acgggctcga gaagcattgg tccgagggcc gcacgatcct gcgcgtccag
      241 tagcgcgggc cgggccgccc ggcggccctc gaggggccat ccggcccgtt ttgcaccgga
      301 tcaggtacgg ggtcacggag taccgtcggg tcatgcccac cgcggtgtcg ggcctcgtac
      361 tgtcgcgcca tgagctccgt ccgagatcga tgtcctgcct gcagccgccg gctcatcacg
      421 acccggttcg acacgacgtt ccggctgccc gaccggaccg agcggctgtg cttcgggatc
      481 ccgggcgggc tgtgcgagga ctgttcgcag ctgtacatcg atcccgacct gatcgagctg
      541 ctcgacctcg gcgagggccg gtgcgtcttc gcgatcgaga gcgatctggt cgtccaggag
      601 caggcctggt ccgccgccga ttagcggcgc ccgcgggcgc ccgatgcgtg cgttgcccgc
      661 cgcggtcggt cgctcacgca ctcgaagtgc gctcgcttcc tcacttggcg ggcgccttcg
      721 cctcggacgc cggcgggcgc cgcttggttg gtggctggac ggtggcgccg cgacggtcgc
      781 ggcccgaatg gttggggacc ggccgctcag gtccgcgcca cgtgatccat cagccagagg
      841 ctgaatgaga ggcggcgctg ggcctcgtcc tggccggcgc cgggcgctcc cttgaccatc
      901 gcgtcgagct cgaccaggcc gtcgagcgct tcggccagct cggccgtcga ccaggccctg
      961 gcctgtgtcg ccagggtctg tgcccggtag tcgctggcga tccccatcgc cttcgctgct
     1021 gcgggcagtc gctcgccggc ggccagccgg tcacccagct ccagcagctc gcgaacgcgc
     1081 cgatggagca cggccagcaa cacgggttcc ggcgtgtcct ccaggagtcg ctcgagcagg
     1141 tcgacggccg cctgcgcgcg acgctcgccg atcgcgtcgg tgaatgccca gaccgaggcc
     1201 gggaccgcct cggcgacgag ggcctggacg tcgtcgacgg tgatcggggc ggcgccgcga
     1261 tacagcgcca gcttgtccag ctccgtcgat gcgatccggg tctggtgccg gcgctcgacg
     1321 tcgttgaggt cgacgaaacc accgacccgc tcggccaggg ccttggcggc accggcggcc
     1381 agctcgagcc cgcgctcccg agcttcggcc tcgatccagc cggcgagcgc accgcgtcgc
     1441 ggcgagtcga acttgcggac ggagcccccc gccgcggcga cggcgtccgc gaggcgcttc
     1501 tgcgacggcg ccttggcccc cgattggctc gcgtcgagca ggacgagcgc attgccgggc
     1561 gccagggagg cgatggccgc gagcaggctc gaccggtgct cggcggtcat ggccaacgat
     1621 cccgggttcg tcacgacggc gagcgcgcct cccccgaaca tcacgggcgt cgcgagccgc
     1681 tcgtggagtt gggcgatctg ctcgccggcc cggttccgat cgccgcggat ctcccagcgc
     1741 tccaggggaa cgccggtgtc ggccgccagt gcggactgca accggtcgac ggcacgcgac
     1801 gcgcccaggt catcgtcgcc ccagtagtag gcgagcgccg ggtcggtcat gacggggtcg
     1861 cgtccgtgcc ggccgcgcga cgggcagacc ggatcgcgct gccggtccac gccagccgcc
     1921 ggacctccca cggggcgacg tccgccgccc ggcagacgtc ggcttcgagc cggtcggccc
     1981 ggacccggac ggaccgccag gcgccgtcgt cccgagcggc gtcgcgtccg tcggcggcag
     2041 gtgcgccata gcgcctccgc caggattcga agcgggcgtc catcgactcg agccgctggc
     2101 cggcccgctt gtcggcatag gccaccatgc gttcctcgcg ggaggcgaag gcggcccacc
     2161 gccggtaggc ctcgccatcg agcaggcgcg tcaccgggtg ggcggcgaca gcgcgcgaga
     2221 gctcggcatg gccggcccgg gtcaaccacg ccgcggagcc ttcgccgtgg gggaggtctc
     2281 gcgccggatc gccggccggc agggccttgt ccacgtcgtg cagcaaggcg gcggcctcca
     2341 cgagccggcg gtcgacggcg acccctcggg attcgatccg agccgcgagc cacgcggcca
     2401 cctcggccac ggcccgcgcg tgcctgacga accaggccgg cggatccagg gagagcagga
     2461 gggaggcggc ctccacccgc ccaggtaccg tcatcgcctc gatggtactc gacggccgtg
     2521 gtccgacccg gcggttcggc ggccggcgtg cgcgacggcg cggggaccgc cggctccagg
     2581 tcggggagga gcgcggtcac cgggatggcg cagcggaatg ccacgttgcg ggaagcggtc
     2641 gcggcgtccg tggtcgtggc gagccccggc ccgacggccg cggagcggcc accttcggca
     2701 cgcaccgtca ggccggatgg ctcgaagccg acgaccacgg tgccgtcgcg atccgtccgc
     2761 aggacgcggg ctcctgccgc cgccagccgg tcgagcgtcg ccttcgccgg gtggccgtag
     2821 gggttcccgg ctccggccga cgccaccgcg atccgtggcc ggacggcatc gacgaagggc
     2881 tgcgtcgtgg cggtcttgct cccgtgatgg gcaaccttga gcaggtcgac gcgcggcagg
     2941 ccctcggcga ggaggctcgg gtcgatcgcc tgctcgacat cgcccatcag caggaagcgg
     3001 cgcgccccgg tctgtccgag caggaccacc gacacgttgt tgatgccggt gccgccgtcg
     3061 ggcggtttcg ccgggacctg gccccggatc ggccacagga cccgcagggc gatctcgtcg
     3121 acctgcagcc gatcgccgct cgcgatgacg ccgtggaccg gtgccgtggt tcgggacagc
     3181 cgggcgagcc aggctgcgta accgggcccg gggccgacca tgcccggttc gaagacgcgg
     3241 ccgacgcgat accgatcgag cagcatcgcc aggccggcga cgtgatcctc gtgggggtgg
     3301 ctgaggatca gcgtgtcgat ccgccgatcc cagggcggga tgtggctgtc gagcgccacc
     3361 agcaggcggt ccggatcggg gccgccgtcg accagcagcc gtccgccgcg ggagccctcc
     3421 acgaggatgc cgtcgccctg gccgacgtcg aggatcgtga cccgtgggta cgttgcgggc
     3481 cgagcgacga cgacgccacc gacgacggcg accgcgatga cgagtgccag cgtcgcggcc
     3541 cgctgggcgg cgcgaccggg cgaatgcgcc gcgcgacggg gaggcctggc ggtcggcgcg
     3601 gcggtgatcg cacgagggat gagcccgggt cgcccgtcac ccccgcgtcg gcgccaccag
     3661 gtcagcccgg ccagtccgcc gatcgagacc gcggcggcga gaagatctag tggcggggcg
     3721 aggtcgaggc tcgcgaacgg ggcggaagca
//
LOCUS       DATDDI010000180         2400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_45207, whole genome shotgun sequence.
ACCESSION   DATDDI010000180 DATDDI010000000
VERSION     DATDDI010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45207"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VIU37_02585"
     CDS             complement(<1..858)
                     /locus_tag="VIU37_02585"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6012857.1"
                     /translation="MTESGSQVAATGIRAETQHLKRGLTLVPLVGIMYFTVCGGTFGV
                     ESLFGNDGSGPGLGLLMLFVVPVIFSVPLMLMVHEMNSMMPHEGGYYHWLKQAFGPFV
                     GFLGGWMNLVVSWLDASIYPVLGAAYLAFIFPALDDGMTVAGVELPGTMVSFLGGALL
                     IWLITALQARGVRLTGLTTDWIGLIILVPLAIMTILGISNAIGQGVPSLPFLPGDQAV
                     NTDSLAGAFGLGMFVVMWNYMGFELATVAGDEIVEPKRTYPRAMLIVLLLAIATYVLP
                     VIAGLYGGAG"
     gene            complement(1180..1308)
                     /locus_tag="VIU37_02590"
     CDS             complement(1180..1308)
                     /locus_tag="VIU37_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012858.1"
                     /translation="MLIGSLILLAFLVLSVLSLAFGADSRDSATDPRRSVWIHGMR"
     gene            complement(1456..2055)
                     /locus_tag="VIU37_02595"
     CDS             complement(1456..2055)
                     /locus_tag="VIU37_02595"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY6012859.1"
                     /translation="MDFVDVVMKRRAVRRFEEGGVAGEVIERIARLAQRTPSAGFSQG
                     QRLLVVVDRERRREVARICGEADYEPVFGPWISECAAQFIPCVSEAVYHRRYQEPDKL
                     QDDGTEIAWPIPYWWVDIGATMQNVMLAAVNEGLGCGFVGTDADGWARLRDLLGIPAE
                     FAPIGVMPVGRPRPDVRSPSLRRGWVPFETFAHWDAWQP"
BASE COUNT          406 a          828 c          838 g          328 t
ORIGIN      
        1 gcccgcgccg ccgtacaggc cggcgatgac cggcaggacg taggttgcga tcgcgagcag
       61 caggacgatg agcatcgccc gcgggtaggt ccgcttcggt tcgacgatct cgtcaccggc
      121 gacggtggcc agctcgaacc ccatgtagtt ccacatcacc acgaacatgc ccaggccgaa
      181 cgcgccggcg agcgagtccg tgttgaccgc ctggtcgccg ggcaggaacg gcagcgacgg
      241 gacgccctgc ccgatcgcgt tggagatgcc gaggatcgtc atgatcgcca gcgggaccag
      301 gatgatcagg ccgatccagt cggtcgtcag gccggtcagc cggacgcccc gggcctggag
      361 cgcggtgatg agccagatca gcagcgcgcc accgaggaac gacaccatcg tgccgggtag
      421 ctcgaccccg gcgacggtca tgccgtcgtc gagggccggg aagatgaacg cgaggtaggc
      481 ggcgccgagc accgggtaga tggatgcgtc cagccacgag acgaccaggt tcatccaccc
      541 gccgaggaat ccgacgaacg gaccaaaggc ctgcttgagc cagtggtagt agccaccctc
      601 gtgcggcatc atcgagttca tctcatgcac catcagcatg agcggcaccg agaagatgac
      661 cgggacgacg aacagcatga ggaggccgag cccgggcccg gatccgtcgt tcccgaacag
      721 cgactcgacg ccgaacgtcc cgccgcagac cgtgaagtac atgatcccca cgaggggcac
      781 cagcgtcagg ccccgcttga ggtgctgggt ctccgcgcgg atccccgtcg cggccacctg
      841 gctgccggat tccgtcatcc ccgtctctcc ttcccctcac cagggcacag gcgcagtgcg
      901 tggcggtgat cgggagcgac cgggcgcgtg gcgctggtca gggtgtcggt cggccagtgg
      961 ctcgacgcgg cccggcggtc ttgggcgatg gaccgcttga cgacgccccc tcgacagccg
     1021 tgaggatcag cgggggactc ggcccgaggc tagaggcatt ggtaacgaat tgcgcgccgg
     1081 gcgcgacggt gccggacgcg acggcgccgg ccggtcgaga cgatggaggt ccgcctcgag
     1141 cgcggccggc gcgagcgcct gcgaagggtg ggtgcgcggt cagcgcatcc cgtggatcca
     1201 gaccgaccgg cgcggatcgg tggcgctgtc gcggctgtcc gcgccgaacg cgagcgacag
     1261 caccgacagg acgaggaagg cgagaaggat gagcgagcca atgagcatcg ggaagaggtc
     1321 tccaagggag gcggaagttg aactagtcga ataatccaag tgtattggac tagtcggcta
     1381 tgtcaaccgg tcccaaggtc acattcggcg ggccgaaccg cccgtcgcgc gaacgcacca
     1441 cccgttcgcg cgtcgtcagg gctgccaggc gtcccaatgc gcgaacgtct cgaacggcac
     1501 ccagccacgc ctgaggctcg gcgatcgcac gtccggacgc gggcgaccga ccggcatcac
     1561 cccgatcggg gcgaactcgg ccgggatccc gaggagatcg cggagtctgg cccagccgtc
     1621 cgcgtccgtc ccgacgaacc cgcagccgag cccctcgttg accgccgcga gcatcacgtt
     1681 ctgcatggtc gccccgatgt cgacccacca gtacgggatg ggccaggcga tctccgtgcc
     1741 gtcgtcctgg agcttgtcgg gctcctggta gcgccggtgg tagaccgcct ccgagacgca
     1801 cgggatgaac tgggcggcgc attccgagat ccatggcccg aagaccggct cgtagtcggc
     1861 ctcgccgcag atccgggcca cctcccggcg gcgctcgcgg tccaccacga ccagcagccg
     1921 ctggccctgg ctgaagccgg ccgacggggt tcgttgtgcc agccgggcga tgcgttcgat
     1981 cacctccccg gcgacgccac cttcctcgaa gcggcgcacc gcccggcgct tcatcacgac
     2041 gtcgacgaag tccatctgtc ctccaggcgc ggccggtccg gatcgtctgc cggaccgcgt
     2101 cgctggatca tgatccggcg cgccggccgg cgtggcggtg ccggcagccc tggccgacgc
     2161 gaccgcctcg tccgaatgcg ggctaccatc gaccgcgtgg caagcagcct gtacgtgcac
     2221 cgcgtccagg gcgccaccaa ggggatgtca tgaccgacaa gggcaccgcg gcaccggcaa
     2281 ctcgcgcgtt cgatggccgt ccgcccgtgc cgggcgctcc ggccttcacc tgccccaagt
     2341 gtcacggcgt gatgcggacg tacgaacgcg gtgggttgat cctcgagctg tgcgaggact
//
LOCUS       DATDDI010000181         1787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_565576, whole genome shotgun sequence.
ACCESSION   DATDDI010000181 DATDDI010000000
VERSION     DATDDI010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565576"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1533)
                     /locus_tag="VIU37_02600"
     CDS             complement(64..1533)
                     /locus_tag="VIU37_02600"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEY6012860.1"
                     /translation="MSKDRVLEELLGEMRKANAIYEGSSGDGGRKAAAMDGQAEIAKG
                     LAANDTDKLGKAVKKANKAKLEARIEALTRLMAENREPSKARSIGSGKATFGPGGRFK
                     GDPSGAKPVKAFRQSFRDYKAGEIVTAIAAVKGYLDDSLETRALGGQKIAEFATFMGA
                     PEMSKAYMLLGSDGKATLGTTGATGGYVLPNNLVDSVIKPNVQQAIYPTLGMRVINGV
                     AVRGVDQPYRTGAPARATFANWGALKENVDEAYGSYTATLGTLAKIYDVGKQYLRFSA
                     GSAEQDVIDEITKSMMLAENYAVIAGPGTGASTPGVNDPTYGVYTALAAGALTYTTAH
                     SAVATTLLGSFAEGLTVGNRALAARSRTPSAWVVDGTTFWTAIGQGTDTAGFWSNPAG
                     GPTQFSMTSSGQLRFWGQPVYFDANLGTNATTKIAIGGEWDALKLYRGIEFRIDSSDV
                     AGTRWDYNLVGFRGEEEIGIHAGTAVSVGAFQLVTGIIP"
     gene            complement(1526..>1787)
                     /locus_tag="VIU37_02605"
     CDS             complement(1526..>1787)
                     /locus_tag="VIU37_02605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012861.1"
                     /translation="PSDALTMAAVKAALVESDAPLTLGGTLADGGSSFRQSGDRSGKA
                     GRVLSRKNAALVAEVRELAERLLVQMRKYDPSDGATGDTSSE"
BASE COUNT          243 a          586 c          654 g          304 t
ORIGIN      
        1 gcgccgccag tcggtcgata ggtgggtcga ggacgaggaa tgcggccgag acggtcatgg
       61 gggttacggg atgatcccgg tcacgagctg gaacgcgccg acggagacgg cggtcccggc
      121 gtggatgccg atctcctcct cgccgcggaa gcccacgagg ttgtaatccc agcgggtgcc
      181 ggcgacgtcc gaggagtcga tgcggaactc gataccgcgg tagagcttga gcgcgtccca
      241 ctcgccgccg atggcgatct tcgtggtggc gttcgtgccg aggttggcat cgaagtagac
      301 cggctggccc cagaagcgga gctggccgga cgaggtcatc gagaactgcg tcggcccgcc
      361 ggccgggttc gaccagaagc cggcggtgtc ggtgccctgt ccgatcgcgg tccagaacgt
      421 cgtgccgtcg accacccacg cggacggggt ccgggagcgg gctgcgaggg cacggttgcc
      481 gacggtgagg ccctcggcga acgagccgag gagcgtggtg gcgacggctg agtgagccgt
      541 cgtgtaggtg agcgcgccgg ccgcgagcgc cgtgtagacg ccgtaggtcg ggtcgttcac
      601 gccaggggtc gaggcgcccg tgccgggacc cgcgatgacc gcgtagttct cggcgagcat
      661 catcgacttc gtgatctcgt cgatgacgtc ctgctcggcg gacccggccg agaagcggag
      721 gtactgcttg ccgacgtcgt agatcttggc gagcgtgccg agggtcgcgg tgtacgagcc
      781 gtaggcctcg tccacgttct ccttgagcgc gccccagttc gcgaaggtgg cccgcgccgg
      841 ggccccggtg cggtacggct ggtcgacccc gcggaccgcg acgccgttga tgacgcgcat
      901 gccgagggtc gggtagatgg cctgctggac gttcggcttg atgaccgagt cgaccaggtt
      961 gttcgggagg acgtagccgc ccgtggcacc cgtggtgccg agggtggcct tgccgtcgct
     1021 gccaaggagc atgtacgcct tggacatctc cggcgcgccc atgaacgtcg cgaactcggc
     1081 gatcttctgg ccgccgagcg cccgcgtctc caggctgtcg tcgagatagc ccttcacggc
     1141 cgcgatggcc gtgacgatct cgcccgcctt gtagtcgcgg aacgactggc ggaacgcctt
     1201 gaccggcttg gcgccggacg ggtcgccctt gaaccggccg ccggggccga acgtcgcctt
     1261 gccgctgccg atgctgcggg ccttgctggg ctcgcggttc tcggccatca ggcgggtcag
     1321 cgcctcgatg cgggcctcga gcttcgcctt gttggccttc ttgacggcct tgccgagctt
     1381 gtccgtgtcg ttcgcggcga ggcccttcgc gatctccgcc tgcccgtcca tcgcggcagc
     1441 cttgcggcca ccgtcaccgg acgagccctc gtagatcgca ttggccttcc gcatctcccc
     1501 gaggagttcc tcgaggacgc ggtccttact cactggacgt gtctcctgtg gcgccatcgc
     1561 tcgggtcgta cttgcgcatc tggacgagca gccgctcggc cagttcgcgc acctcggcca
     1621 cgagggcggc attcttccga gataggacgc ggcccgcttt gccggagcga tcgccggact
     1681 gacggaagga actgccgccg tcagccaagg tcccgcccaa ggtcaggggt gcgtctgact
     1741 ccacgagggc cgccttgacg gccgccatcg tgagagcgtc ggagggg
//
LOCUS       DATDDI010000182         1989 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_461450, whole genome shotgun sequence.
ACCESSION   DATDDI010000182 DATDDI010000000
VERSION     DATDDI010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461450"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..1886
                     /locus_tag="VIU37_02610"
     CDS             345..1886
                     /locus_tag="VIU37_02610"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY6012862.1"
                     /translation="MRSTGVLLGLAFVVLASLAALTGSAVALSIRDGTDPAWLSPAIW
                     GALALGSAIALCWLAIRRLQAVLRVVRRLAAGELDATITHPGDGFLGQLERSVNAVSA
                     KLTEAHSASTTDLLTQVSNRGTVLSNLFTEVDRAVRHGRPLSVAFVDLDHFKAINDTH
                     GHQVGDIVLRTVADVFRANLRQTDVVGRYGGEEFMVVLPETPPAEAADVAEKLRLLVQ
                     RLKIQAGPELTVAVTVSVGIAGGQGETLRAESLVRDADQAMYAAKSMGRNQTYVFEEP
                     SDDARVPSAPISPAGRTRALEVAAVARKAAEAALSGAVEPMPHYRGKPSALIATIAVA
                     IAGEVLLPEQEIERIRVAALLHDIGKLAVPGEILEKPTSLSASEWDFVKQHPRIGQVI
                     LNETGGLQEAGKIILHHHERFSGHGYPYGLRGREIPLGSRIVSIADAYDAMVQDRPYK
                     RAIDHEAAVAELKRHAGTQFDPELVEVFLRLFAEHSPVPDTNLLVVRDAGMRKLLRER
                     RLRSA"
BASE COUNT          276 a          701 c          718 g          294 t
ORIGIN      
        1 cgaggagcac ggcgccagcg ccggcgagga tcgtcgaccg gggaacgccc ggcggagcgg
       61 ccgccggctc ccggtcgctg ggcgtggcgg cgggcgcgtc ttcgagggcg cgccagggcg
      121 tcgacgatgg gtccacacga cctccaggct ggtcgggcgg gcgacgccag gaatcacgcg
      181 acgtctcgcc acgttggggg cacttccgac gcggcgagac gtcgatgggc actgtagcgc
      241 gccgcgctta gctgcgactt accgccggcg ccacgccgcc ggtacgttcg ggcagtacca
      301 acgggtcgct tgcggcgccg tttcgggcgg atacggtgcg gggcatgcgg tcgacggggg
      361 tcctgctcgg tctggcgttt gtcgtcctgg ccagcctggc ggcattgacg ggcagcgccg
      421 tggcgctgtc gattcgtgac ggcacggatc ctgcctggct ctcgccggcg atctggggcg
      481 ccctcgcgct ggggtcggcg atcgccctgt gctggctggc gatccgccgg ctgcaggcgg
      541 tcctgcgcgt ggtccgccga ctcgcggccg gcgagctgga cgcaacgatc acgcatcccg
      601 gcgacgggtt cctcggccag ctcgagcggt cggtcaacgc ggtttcggcc aagctcaccg
      661 aggcccacag cgcctcgacg accgatctcc tcacccaggt gtcgaaccgc ggtacggtcc
      721 tgtcgaacct gttcacggag gtcgaccgcg cggttcgcca cggccgcccg ctgtcggtcg
      781 cgttcgtcga cctcgaccac ttcaaggcga tcaacgacac ccacggccac caggtcggcg
      841 acatcgtcct tcggacggtg gctgacgtgt ttcgcgccaa cctccgccag accgacgtgg
      901 tcggccgcta cggcggcgag gagttcatgg tcgtcctccc ggagacgcca ccggcggaag
      961 ccgccgacgt tgccgagaag cttcgcctgc tcgtccagcg actcaagatc caggccggtc
     1021 ccgagctgac cgtggcggtc acggtctcgg tcgggatcgc gggcggccag ggcgagaccc
     1081 tgcgcgccga atcgctggtc cgggacgccg accaggcgat gtacgccgcg aagtcgatgg
     1141 ggcgcaacca gacatacgtc ttcgaggaac cgagcgacga cgcgcgcgtc ccgagcgcgc
     1201 cgatctcgcc ggccggccgg acccgggcgc tcgaggtcgc agccgtcgcc cgcaaggcgg
     1261 ccgaagccgc gctcagcggc gccgtcgagc cgatgcccca ttaccgcggc aagccgtcgg
     1321 cgctgatcgc cacgatcgcc gtggcgatcg cgggcgaggt gctgctgccc gagcaggaga
     1381 tcgaacggat ccgggtcgcg gcgctcctgc atgacatcgg caagctggcg gtccctggcg
     1441 agattctcga gaagccgacc tcgctgtcgg cgtcggagtg ggacttcgtc aagcagcacc
     1501 cgcggatcgg ccaggtgatc ctcaacgaga cgggcgggct gcaggaggcg ggcaagatca
     1561 tcctccatca tcacgagcgg ttcagcggcc acggctaccc gtacggcttg cgcggccggg
     1621 agatcccgct cggatcccgg atcgtctcca tcgccgacgc ctacgacgcg atggtccagg
     1681 accgtcccta caagcgcgcg atcgaccacg aggccgccgt cgccgagctc aagcgccacg
     1741 ccgggacgca gttcgatccc gagctggtcg aggtcttcct gcgcctcttc gccgaacact
     1801 ccccggtacc cgacacgaac ctgttggtgg ttcgcgacgc cgggatgcgg aagctgctcc
     1861 gcgagcggcg gctgcggtcg gcctgaggcc tccctccggg ctcccggcgc ggcttcgatc
     1921 ctgtcagaat ccgcgcccga gggaggtcgt tgcgaagggg gtcgtcgtga ggctttggcc
     1981 gttcgggcg
//
LOCUS       DATDDI010000183         1946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_295101, whole genome shotgun sequence.
ACCESSION   DATDDI010000183 DATDDI010000000
VERSION     DATDDI010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295101"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..550)
                     /locus_tag="VIU37_02615"
     CDS             complement(<1..550)
                     /locus_tag="VIU37_02615"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase family
                     protein"
                     /protein_id="HEY6012863.1"
                     /translation="MFDFTPNPIAIQLGPLPVYWYGIGYALGLAAAYLVLVRLARRAG
                     EDPEVVGNGMIVVAIAALIGGRAYHVIDQWALYKDDLLKIVLPPYTGLGVYGGIVTGL
                     IAFAFLVRRWKVDLWAWADIVAVGIFVMQAVGRWGNFFNQELYGPPTSLPWGIAIDCA
                     HRVSDHGTVIYPCAQYPEATTFF"
     gene            complement(881..1723)
                     /locus_tag="VIU37_02620"
     CDS             complement(881..1723)
                     /locus_tag="VIU37_02620"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEY6012864.1"
                     /translation="MDHDQTREQLELAAVEPGGIDRLIAGDTATAQAVAAHLAGCPDC
                     TGELARLQRAVSVIGAAVRELPPPDLRERTLASVLALGRARGGSVPETAPADAASAEL
                     PQRPLARVRVLPARRAAIGWIAAIAAAIVLSVATTSFLVGGRVDRQLADQADTIHTLQ
                     EVTTATLQVTGEADARHVTLTGTSNPELVGSLVFSPSSAQLVVVATGLTQPPAGQEYR
                     CWVERDGRRQRVGRMFFSGDLAYWIGPVPALSGVSSDARFGVSLVDASGTSIDSPPVL
                     GGAL"
     gene            complement(1730..>1946)
                     /locus_tag="VIU37_02625"
     CDS             complement(1730..>1946)
                     /locus_tag="VIU37_02625"
                     /inference="COORDINATES: protein motif:HMM:NF016432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEY6012865.1"
                     /translation="AAMPEAERTVILLAYQEELSQTEIADRLDWPLGTVKTRTRRALL
                     RLREALGGEFGPSPEPDELPVPTGGDR"
BASE COUNT          290 a          693 c          700 g          263 t
ORIGIN      
        1 ggaagaaggt cgtggcttcg ggatactggg cgcacgggta aatgacggtg ccgtggtcgc
       61 tgacgcgatg ggcgcagtcg atcgcgatgc cccacggcag gctggtcggc ggcccgtaca
      121 gctcctggtt gaagaagttg ccccaacgcc cgaccgcctg catgacgaag atcccgacgg
      181 cgacgatgtc ggcccaggcc cacaggtcga ccttccaccg cctcacgagg aaggcgaagg
      241 cgatcaggcc cgtgacgatc ccgccgtaga cgcccagccc ggtgtacggc ggcaggacga
      301 tcttgagcag gtcgtccttg tagagcgccc actggtcgat gacgtggtag gcccgcccgc
      361 cgatcaacgc ggcgatcgcc accacgatca tcccgttgcc gaccacctcg ggatcctcgc
      421 cagcccggcg cgccagccga accaggacca ggtaggcggc ggcgaggccg agggcgtagc
      481 cgatgccgta ccagtagacg ggcagcggcc cgagctggat cgcgatggga ttgggcgtga
      541 agtcgaacat cggggtggag tgtagccgcc cggtcgggat cggctcccta tactggccgc
      601 cggtgaacgc tgaattcaac gtctggctgc tgatcgtcgg cctgatcctc ggggccgggc
      661 tggtctggct cgtggtcatg gactcgcgac gacgcgaatc ggaggtcgac gcggtcgagc
      721 ggcctcgcga agcggcctgg ctgtcgctgg tcatggccga ggacgggttc gacgtcagcc
      781 ccgaggcagc cgaacgcctg ctgctcctcc accgcgccta cctcggcgcg cccccgccgg
      841 acgagatcga ggacgacgag ctccaggacg gggagccggt tcagagcgcc ccgccgagca
      901 ccggcgggga atcgatcgag gtgcccgacg cgtcgaccag cgagacgccg aaccgggcgt
      961 cgctcgacac gccggacagc gccgggaccg gcccgatcca gtaggccagg tcgccgctga
     1021 agaacatcct gcccacgcgc tgtcgccggc cgtcgcgctc cacccagcac cggtactcct
     1081 gaccggcagg cggctgcgtc aggcccgtcg cgacgaccac gagctgggcg ctcgacgggg
     1141 agaagaccag gctgccgacc agctccgggt tcgacgtgcc ggtcaacgtc acgtgcctcg
     1201 catccgcctc gccggtcacc tgcagcgtgg ccgtcgtcac ctcctggagc gtgtggatcg
     1261 tgtccgcctg gtcggccagc tggcggtcca cccggccgcc gaccaggaac gaggtggtcg
     1321 ccaccgacag cacgatggcc gccgcgatgg cggcgatcca gccgatcgcg gctcgccgcg
     1381 caggcaacac ccggacccgt gccaacggtc gctgtggcag ctcggcggac gccgcatcgg
     1441 caggcgccgt ctccggtacc gagcccccgc gggcacggcc gagcgccagg acggacgcca
     1501 gggtgcgctc gcgaaggtcg ggtggcggca gctcacggac ggccgcgccg atcacgctga
     1561 cggcgcgctg gagtcgcgcg agctcgccgg tgcagtccgg gcagccggcc aggtgcgccg
     1621 ccacggcctg ggccgtcgcg gtgtcgccgg cgatcaggcg gtcgatgccg cccggctcga
     1681 cggcggcgag ctccagctgt tcccgggtct ggtcgtgatc catggtgtcc tatcgatccc
     1741 cgccggtcgg aaccggcaac tcatccggtt cgggtgacgg cccgaactcc ccgcccagcg
     1801 cttcgcgcag gcgcagcagc gcccgccggg tccgcgtctt caccgttccg agcggccagt
     1861 cgagccggtc ggcgatctcg gtctgcgaca gctcctcctg gtaggccagg aggatgaccg
     1921 tgcgttcggc ttcgggcatg gcggcc
//
LOCUS       DATDDI010000184         3309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_648855, whole genome shotgun sequence.
ACCESSION   DATDDI010000184 DATDDI010000000
VERSION     DATDDI010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_648855"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1277)
                     /gene="mmsA"
                     /locus_tag="VIU37_02630"
     CDS             complement(<1..1277)
                     /gene="mmsA"
                     /locus_tag="VIU37_02630"
                     /EC_number="1.2.1.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR01722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004491 - methylmalonate-semialdehyde
                     dehydrogenase (acylating, NAD) activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEY6012866.1"
                     /translation="MTIETRPVEAGSNTLPVLSHWIGGMPVEVLPEHTGPVYNPATGE
                     VIARVPRGGKPEVDRAVEAAKAAFPAWRDMPLIARSQVLFAFRELAWKRREELAALIV
                     RDHGKTFADAFVGVTRGIETVEYACGLPVHLAGMNTPNVASGVDAVTLRQPLGVVAAI
                     TPFNFPVMVPMWILPIALAAGNAVILKPSSHTPGATQLQAELWKEAGLPDGILNVVYG
                     GRDAVAAIVEHPDIKAIQFVGSTAVGRYVYEEGTKRGKRVGAFTSAKNAMVVLPDADL
                     EMTADAAVASGYGSAGERCMAQTLLIAVGDTADKLRPLMLERIAKLKVGPGMEPDVDM
                     GPIYTKEHRESIIKWIDRGVEEGAELVVDGRPFVHPEHPDGFYLGVSLFDHVQPGMDI
                     YNEEIFGPVLGMVRVATYDEAINLVNSHKYANGT"
     gene            complement(1357..>3309)
                     /gene="preA"
                     /locus_tag="VIU37_02635"
     CDS             complement(1357..>3309)
                     /gene="preA"
                     /locus_tag="VIU37_02635"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006183.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017113 - dihydropyrimidine dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0006210 - thymine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006212 - uracil catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HEY6012867.1"
                     /translation="LLAGHDAVIVAIGLAHTRRLGIPGEDLPGVVDALDLIGSAIDGR
                     AAKVEIGRRVGVVGGGSTAFDAAAAAVRLGAEEVTLFYRRSAAECPAYPHAIELARSL
                     GVVVRWLTAPVEVVGDGSVWALALERMALGAPDASGRRRPERIEGSRFDVALDTVVRA
                     VGQAAPSGLLASLGIDVRDGIAVVDPATGRTANPKVWAIGDVTSGGAEVVNAVQAGKL
                     AARSIVDAFGLESRIASIRPTDATVPGVDLFTDLAGIRSPNPFWLASCPISNTGEMVA
                     RAFDAGWGGVVWKTIGEPIRNVTSRLGALDLGGRRMVGLSNIELITDRPLEVNLAEIA
                     DVKRRYPSQAVVVSLMVEAKPETWYDYVKRVNDTGADGIELNFGCPHGMSERGMGAAV
                     GQVPEYVQMITEWVMEKATIPVLVKLTPNVTDIRKPARAARAAGADGIALINTISSLI
                     GVNLDSWAPVPDVRGKGSHGGYSGPAVKPIALNMVSAVASDPDVRLPVSGIGGVADWH
                     DAVEFLLVGATTVQVGTSVMHLGFRMIDDLVDGLSTYLRTKGLHSPAELVGRALPSLT
                     DWGQLDQSFRLLAQIDESRCIHCNLCYAACNDGAHQAIRLEGTNGSTRLHVEGDYCVG
                     CHLCQYVCPVEGCIEMVELEGPATVH"
BASE COUNT          473 a         1154 c         1181 g          501 t
ORIGIN      
        1 gtgccgttcg cgtacttgtg ggagttgacc aggttgatcg cctcgtcgta cgtggcgacg
       61 cggaccatac cgaggaccgg cccgaagatc tcctcgttgt agatgtccat gcccggctgc
      121 acgtggtcga agagcgagac cccgaggtag aacccgtcgg gatgctcggg atggacgaac
      181 gggcgcccgt cgacgacgag ctccgcgccc tcttccacgc cgcggtcgat ccacttgatg
      241 atcgactcgc ggtgctcctt cgtgtagatc ggccccatgt cgacgtccgg ctccatgccg
      301 ggaccaacct tcagcttggc gatccgttcg agcatcagcg gccgcagctt gtcggccgtg
      361 tcgcccaccg cgatgagcag ggtctgggcc atgcagcgct cgccggccga gccgtagccc
      421 gacgccacgg ccgcgtcggc ggtcatctcg aggtccgcgt ccggcaggac caccatcgcg
      481 ttcttggcgc tggtgaacgc gccgacgcgc ttgccgcgct tggtgccttc ttcgtacacg
      541 tagcgcccga cggccgtcga accgacgaac tggatggcct tgatgtcggg gtgctccacg
      601 atcgcggcga ccgcgtcgcg gccaccgtag acgacgttga ggatgccgtc cggcagcccg
      661 gcttccttcc acagctcggc ctggagctgg gtggcgcccg gcgtgtgcga cgacggcttg
      721 aggatgaccg cgttgccggc cgcgagcgcg atcggcagga tccacatcgg gaccatgacg
      781 gggaagttga acggcgtgat cgcggcgacg acgccgagcg gctggcgcag cgtcacggcg
      841 tcgacgcccg aggccacgtt cggcgtgttc atgccggcca ggtggaccgg caggccgcag
      901 gcgtattcca cggtctcgat gccgcgggtg acgccgacga acgcgtcggc gaacgtcttg
      961 ccgtggtcgc ggacgatgag ggcggcaagt tcctcgcggc gcttccaggc cagctcgcgg
     1021 aacgcgaaca ggacctggct gcgcgcgatc agcggcatgt cgcgccaggc cgggaaggcg
     1081 gccttggccg cctcgacggc ccggtcgacc tcgggcttcc cgccgcgcgg cacgcgggcg
     1141 atgacctcgc cggtcgccgg gttgtagacc gggccggtgt gctcgggcag gacctcgacc
     1201 ggcatgccgc cgatccagtg cgagaggacg ggcagcgtgt tcgacccggc ttcgaccggg
     1261 cgggtttcga tggtcacgga agcctccttc gacatgcggc cggttgcgac gatcgacgcg
     1321 gcggccgccg gccgcgtcac ggctctgggt cgacgttcag tggacggtcg ccggtccctc
     1381 cagctcgacc atctcgatgc aaccctcgac cgggcagacg tactggcaca ggtggcagcc
     1441 cacgcagtag tcaccctcga cgtggagccg ggtgctcccg ttggtgcctt ccagccggat
     1501 ggcctggtgt gcgccgtcgt tgcacgccgc gtagcacagg ttgcagtgga tgcagcgact
     1561 ctcgtcgatc tgggcgagga ggcggaacga ctggtcgagt tggccccaat cggtcaggct
     1621 cgggagcgcg cggccgacca gctccgccgg gctgtggagg cccttggtgc gcaggtaggt
     1681 cgacaggccg tcgacgaggt cgtcgatcat ccggaagccc aggtgcatga cgctcgtacc
     1741 gacctggacc gtggtggcgc cgacgagcag gaactcgacc gcgtcgtgcc agtccgcgac
     1801 gccgccgatc ccggacacgg gcagccggac gtccgggtcc gacgcgaccg ccgacaccat
     1861 gttgagggcg atcggcttga ccgccggacc cgagtagccg ccgtggctgc ccttgccgcg
     1921 gacatcggga acgggcgccc agctgtcgag gttgacgccg atgagcgagc tgatcgtgtt
     1981 gatcagggcg atcccgtcgg ccccggccgc ccgcgccgcc ctcgccggct tgcggatgtc
     2041 ggtcacgttc ggggtgagct tcacgaggac ggggatggtc gccttctcca tcacccattc
     2101 ggtgatcatc tggacgtact cggggacctg gccgaccgcg gcacccatcc cccgctcgct
     2161 catgccgtgc gggcagccga agttgagctc gatgccgtcg gcgcccgtgt cgttgacccg
     2221 cttgacgtag tcgtaccagg tctcgggctt cgcctcgacc atgagcgaga cgacgacggc
     2281 ctggctggga tagcgccgct tgacgtcggc gatctccgcc aggttgacct cgagcggacg
     2341 gtccgtgatg agctcgatgt tggacaggcc gaccatccgc cgaccaccca ggtcgagcgc
     2401 ccctagccgt gacgtgacgt tccggatcgg ctcgccgatc gtcttccaga ccaccccacc
     2461 ccagcccgcg tcgaatgccc gggcgaccat ctcgcccgtg ttcgagatcg ggcagctggc
     2521 gagccagaac gggttcgggc tgcggatgcc ggcgagatcg gtgaacaggt cgacgccggg
     2581 gaccgtggcg tcggtcgggc gaatggacgc gatccgcgac tcgaggccga acgcgtcgac
     2641 gatcgagcgg gcggccagct tcccggcctg gacggcgttg acgacctcgg caccgccgct
     2701 ggtgacgtcg ccgatcgccc agaccttcgg attggcggtg cgtcccgtcg cgggatcgac
     2761 cacggcgatc ccgtcccgga cgtcgatgcc gagcgaggcg agcagcccgg acggcgccgc
     2821 ctgcccgacc gcgcggacca ctgtgtcgag ggcgacatcg aaccgcgagc cttcgatccg
     2881 ttcgggccgc cgccggccgg acgcgtccgg cgcgccgagc gccatccgct cgagcgccag
     2941 ggcccagacc gagccgtcac cgaccacctc gaccggcgcc gtcagccagc gaaccacgac
     3001 gccgaggctc ctcgcgagct cgatcgcgtg cgggtatgcg ggacattcgg cggcgctccg
     3061 ccggtagaac agggtcacct cctcggcgcc gagccgcacg gccgcggcgg cggcgtcgaa
     3121 cgcggtgctg ccaccgccga cgacgccgac ccgccggccg atttcgacct tggcggcacg
     3181 gccgtcgatg gcgcttccga tgagatcgag ggcgtcgacg acgccgggca ggtcctcccc
     3241 ggggatgccg aggcgtctcg tgtgcgccag gccgatcgcg acgatgaccg cgtcatggcc
     3301 agcgagcag
//
LOCUS       DATDDI010000185         2074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_212057, whole genome shotgun sequence.
ACCESSION   DATDDI010000185 DATDDI010000000
VERSION     DATDDI010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212057"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..>2074)
                     /gene="acnA"
                     /locus_tag="VIU37_02640"
     CDS             complement(135..>2074)
                     /gene="acnA"
                     /locus_tag="VIU37_02640"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: protein motif:HMM:NF006757.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEY6012868.1"
                     /translation="FPIDDETLAYLRLTGRSAERVELVERYARAQGLWREPGDGPAFD
                     EALELDLGSVDPSVAGPRRPQDRVPLTDLRENFRSNYPAGLEGPVADLGGEQPIAGDG
                     VVEEASAESFPASDPTSFAGHEAAGAPSTSASPTGDAVPIGAAGPAPERRYRQVEVEL
                     DGHRVSLHTGSVAIAAITSCTNTSNPTVMIGAGLLARNAVARGLHVEPTVKTSLAPGS
                     RAVTGYLEAAGLMAPLETLGFALAGYGCTTCIGNSGPLDDAVAAAIEANDLVVAAVLS
                     GNRNFEGRIHPLARASYLASPPLVVAFALAGRVDIDLTTEPLGTGSDGYPVFLADIWP
                     GLDEIRSVIAGSIDPELFRSTYATVFEGDERWRALPIPSGDRYAWQADSSYIAKPPFF
                     DGMTLDPAPVGDIAGARVLAMLGDSVTTDHISPAGSIAPWSPAGQWLQAHGVGPLEFN
                     SYGARRGQHEVLVRGTFGNIRLRNRLVEGTEGPYTVHLPDGEQTFIFDAAERYRAEGV
                     PLAILAGREYGSGSSRDWAAKGPALLGVRFVLAESYERIHRSNLVGMGILPLQYAQGQ
                     SAATLGLTGRELFSVHGLDRPLTPRQTVAVTAFRDPAAGGDGTERRFDAIARLDGPID
                     VEYYRQGGILPTVLRRLATEA"
BASE COUNT          292 a          705 c          806 g          271 t
ORIGIN      
        1 aatcgcatcc tcgcggcccc ggatgacgag ctcgtcgtgt acctgagccg acccgacgtg
       61 ggtgccgtgg tcagggcggc tgccgagttc ggccgggtgg tccggctcgg cccgatcgcc
      121 gcggcgggcg ccgactaggc ctcggtcgcc aggcgcctca acaccgtcgg caggatcccg
      181 ccctggcggt agtactccac gtcgatcggg ccgtcgagcc gcgcgatcgc gtcgaagcgg
      241 cgctcggttc cgtcgccacc ggcggccgga tcgcggaacg cggtgaccgc caccgtctgg
      301 cgcggcgtca gcgggcggtc gaggccgtgc acgctgaaga gctcgcgccc ggtcagcccg
      361 agcgtcgcgg cggactggcc ctgggcgtac tggagcggga ggatgcccat gcccaccagg
      421 ttcgatcggt ggatccgctc gtagctctcg gccaggacga accggacgcc cagcagcgcc
      481 gggcccttgg ccgcccagtc gcgggacgag ccggagccgt actcgcgccc ggcaaggatg
      541 gccagtggca cgccctcggc cctgtagcgc tcggcagcgt cgaagatgaa cgtctgctcg
      601 ccgtcgggca ggtgcacggt gtacgggccc tcggtgcctt ccacgagccg gttgcggagc
      661 cggatgttgc cgaacgtgcc gcgaaccagg acctcgtgct ggccgcgccg ggcgccgtac
      721 gaattgaact cgagcgggcc gacaccgtgc gcctggagcc actggccggc gggggaccac
      781 ggcgcgatcg agccggccgg cgagatgtgg tcggtcgtga ccgagtcgcc gagcatcgcc
      841 agcacccggg cccctgcgat gtcgccgacg ggtgccgggt cgagggtcat gccgtcgaag
      901 aacggcggct tggcgatgta cgacgagtcc gcctgccagg cgtatcgatc gcccgacggg
      961 atcggcagcg cgcgccaacg ctcgtccccc tcgaacaccg tggcgtaggt ggagcggaag
     1021 agctccggat cgatcgagcc ggcgatgacc gagcggatct cgtcgaggcc gggccagatg
     1081 tcggccagga agaccggata cccgtcggag ccggttccga gcggctccgt ggtcaggtcg
     1141 atgtcgaccc gcccggccag ggcaaaggca acgaccagcg gcggcgaggc gaggtagctc
     1201 gcacgggcca agggatggat ccggccctcg aagttgcggt tgcccgacag gacggccgcc
     1261 acgaccaggt cgttggcctc gatcgccgcg gcgacggcgt cgtcgagcgg gcccgagttg
     1321 ccgatgcacg tggtgcagcc gtacccggcg agggcgaatc cgagggtctc gagtggggcc
     1381 atgaggccgg cggcctcgag gtagcccgtg acggcgcgcg agccgggcgc cagcgaggtc
     1441 ttgacggtgg gttcgacgtg gaggccgcgc gcgaccgcgt tacgggccag cagaccggcg
     1501 ccgatcatga ccgtcgggtt cgaggtgttc gtgcacgagg tgatggcggc gatggcgacg
     1561 gagcccgtgt ggagcgacac gcgatggccg tcgagctcga cctcgacctg ccggtagcgt
     1621 cgctcgggcg ccggaccggc ggctccgatc ggcaccgcat cgcccgtcgg tgaggcggag
     1681 gtggacggcg caccggctgc ctcatggccg gcgaatgagg tgggatcgct cgcggggaag
     1741 gactcggccg aggcctcttc gacgacgccg tcgccggcga tcggctgctc gccgccaagg
     1801 tcggcgaccg gtccctcgag cccggccgga tagttggacc ggaagttctc gcggagatcg
     1861 gtcagcggga cgcggtcctg cggccggcgc gggccggcca cggacggatc gaccgacccc
     1921 aggtcgagct ccagcgcctc gtcgaacgcg ggcccgtcgc cgggctcgcg ccagaggccc
     1981 tgggcgcggg cgtagcgctc caccagctcg acccgttcgg ccgaccgacc ggtgaggcgg
     2041 aggtaggcga gcgtctcgtc gtcgatcggg aaga
//
LOCUS       DATDDI010000186         2182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_732275, whole genome shotgun sequence.
ACCESSION   DATDDI010000186 DATDDI010000000
VERSION     DATDDI010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_732275"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..801)
                     /locus_tag="VIU37_02645"
     CDS             complement(<1..801)
                     /locus_tag="VIU37_02645"
                     /inference="COORDINATES: protein motif:HMM:NF013197.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012869.1"
                     /translation="MTEPSGDPTRDQAPPAEAAPVAEAARPEGGQVPGESPPAGAPAA
                     DQPADVDLGRRGFFRAFAGELFQTAATVAGAAQALQRASAEAAGAILDPSSAAGLLGV
                     ADDRTPSRPDAPRGFRTPFREDDGVLYLIDQRRLPDALVEHSCRSAGEVAFAIREMII
                     RGAPAIGQAAAIGMALTAEKMRTSRPYARRATLRGSANALINSRPTAVNLRWAVDRML
                     ARYDAIGDLSEDGDAIADALRAEADAIVFEATTDHGRMAGFGLGILPLP"
     gene            complement(828..1349)
                     /locus_tag="VIU37_02650"
     CDS             complement(828..1349)
                     /locus_tag="VIU37_02650"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEY6012870.1"
                     /translation="MSAEELRAKIREVPDFPKPGILFYDITTLLKDAAAYREAIDLML
                     APYTGEPIDVVVGMESRGFIFSAPMAYQLNAGLVPVRKLGKLPAETITVEYALEYGSN
                     TLEIHRDAIQPGQKVLVVDDLLATGGTVHGTIELVERLKGEVVGLAFLVELEFLKGRD
                     RLNGRRVTSVIQY"
     gene            complement(1465..>2182)
                     /locus_tag="VIU37_02655"
     CDS             complement(1465..>2182)
                     /locus_tag="VIU37_02655"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012871.1"
                     /translation="LPELVPAATLSVAGAGVGLLALRQLTPAGTLAARPVLPAAVLLR
                     GLLTFMFFGFDVFVALVLVTWRGRSLTESGITLTATTVLWTAGSWVQARNTTRWPTYR
                     FVQAGFAVALAGLAGFMVVLRQDVDWLVGIPTFALAGFGMGLAYSPLALIVLREASVE
                     TQGSASSALSLTDSVGTALGTGVAGAIVAASVRSTGEPVPGLAIAFAVSLAVGVGGLL
                     LSGRLRPHPVVAVTQPIEAS"
BASE COUNT          322 a          791 c          807 g          262 t
ORIGIN      
        1 cggcagcggg aggatcccca gcccgaaccc ggccatccgg ccgtgatccg tcgtcgcctc
       61 gaacacgatc gcgtcggcct cggcgcggag ggcgtcggcg atcgcgtcgc cgtcctcgga
      121 caggtcgccg atcgcgtcgt agcgcgccaa catccggtcg accgcccagc gcaggttgac
      181 cgccgtcggg cgcgagttga tcagcgcgtt ggccgatccc cgcagcgtcg cccgccgcgc
      241 gtacggccgt gaggtccgca tcttctccgc ggtcagcgcc atcccgatcg cggcggcctg
      301 accgatcgcc ggggcaccgc ggatgatcat ctcgcggatc gcgaacgcga cctcgccggc
      361 cgaccggcac gagtgctcga cgagggcgtc cgggaggcgc cgctggtcga tcaggtacag
      421 gacgccgtcg tcctcgcgga acggggtccg gaacccgcgg ggcgcgtcgg ggcgggacgg
      481 cgtccggtcg tcggcgacac ccaggagccc ggccgcggac gacgggtcga ggatggcgcc
      541 ggcggcctcg gccgaggccc gttgcagcgc ctgggccgcg cccgcgacgg tcgccgcggt
      601 ctggaacagc tcgccggcga aggcccggaa gaagccgcgc cgcccgagat cgacatcggc
      661 cggctggtcg gctgccggcg ctccggcagg cggcgactcg cccggcacct ggccgccctc
      721 gggccgtgcc gcctccgcca cgggcgccgc ctccgcgggt ggcgcctggt cgcgggtggg
      781 gtcgccggat ggctcggtca acggcggggc ctcgctgcgt gcggcggtca gtactggatg
      841 acgctcgtga cgcgccggcc gttcaggcga tcccggccct tcaggaattc cagctcgacc
      901 aggaacgcga gtccgacgac ctcgcccttg agccgctcga ccagctcgat cgtcccgtga
      961 acggtcccgc ccgtcgccag caggtcgtcg acgacgagca ccttctggcc cggctggatc
     1021 gcgtcgcggt ggatctccag cgtgttcgag ccgtactcga gcgcgtactc gacggtgatc
     1081 gtctcggccg gcagcttgcc cagcttgcgc acggggacga ggccggcgtt gagctggtag
     1141 gccatcggtg cactgaagat gaagccccgc gactccatgc ccacgacgac gtcgatcggc
     1201 tcgcccgtgt agggcgcaag catcaggtcg atggcctcgc gataggcggc ggcatccttg
     1261 agcagcgtcg tgatgtcgta gaagaggatg ccgggcttgg ggaagtcggg aacctcgcgg
     1321 atcttcgcgc gcagctcctc ggcagacacg gtatcgaggc ctccatgatc ctggggcgcg
     1381 cgccgtgggc ggcgggcgtg agcgttccga agtctaccgc aggcgccgcg acggctcgac
     1441 ggggacgcag cgggcgtcga aggctcagga cgcctcgatc ggctgggtca cggccacgac
     1501 cgggtgcggt cgcagccggc cgctcagcag caggccgccg acccccaccg cgagcgacac
     1561 ggcgaaggca atggccaatc ccggtaccgg ctcgccggtc gatcgcacgc tggccgcgac
     1621 gatcgccccg gccacaccgg tcccgagcgc ggtgccgacc gaatcggtga gcgacagcgc
     1681 gctcgacgcg gaaccctggg tctcgacgga cgcctcacgg agcacgatca gcgcgagcgg
     1741 cgaataggcc aggcccatcc cgaacccggc cagcgcgaag gtcgggatgc cgaccagcca
     1801 gtcgacgtcc tgacggagga cgaccatgaa accggccagc ccggccagcg cgacggcgaa
     1861 cccggcctgg acgaagcggt aggtgggcca gcgcgtcgtg ttccgggcct ggacccacga
     1921 gcccgcggtc cagaggacgg tcgtggcggt cagcgtgatc ccggattcgg tcagcgaccg
     1981 gccgcgccac gtgacgagga ccaaggccac gaacacgtcg aacccgaaga acatgaacgt
     2041 cagcagaccg cgcagcagga ccgccgcggg caggaccggc ctggccgcga gggtgcccgc
     2101 cggtgtcagc tggcgcagcg cgaggagccc gacgcccgcc cccgccaccg acagcgtcgc
     2161 cgccgggacg agctcgggca gg
//
LOCUS       DATDDI010000187         3096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_232849, whole genome shotgun sequence.
ACCESSION   DATDDI010000187 DATDDI010000000
VERSION     DATDDI010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232849"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VIU37_02660"
     CDS             complement(<1..621)
                     /locus_tag="VIU37_02660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012872.1"
                     /translation="MHPTSGGHPISADPLRLGELVATLALAQDNAFGQPFDSQLRSCL
                     LAMALCDEAGFDEELRRTVYWVSLLRYVGCTGHAHEVASVFGDDIAILGQTLVMDAAD
                     PADVGRTMVAAATAGHPPDEHPEIIRALQAGAHDWAVHNFATGCEVGDMLIQRLDLGP
                     DVRAAFGFTYERWNGNGYPTHAKGDQIPLATRVVHLTHDMEAISRRS"
     gene            672..2084
                     /locus_tag="VIU37_02665"
     CDS             672..2084
                     /locus_tag="VIU37_02665"
                     /inference="COORDINATES: protein motif:HMM:NF005687.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEY6012873.1"
                     /translation="MNELLGKGAGELARMIATRDVTSTEVVETHLARIAEVNQDVNAI
                     TVTLADEARAAAAAVDRSVAAGRPVGPLAGVPFTVKENIDVAGSATTWGVAALAGQIA
                     SSDAPMVARLREAGAIPLARTNLPDFAFRWHTESGRAGHTRNPWDPTRTPGGSSGGEA
                     VALATGMTPLGLGNDLGGSLRIPAQMCGITAIKPSRGRVAEGAGTEPAVQPISIQATM
                     VAGPMARRVADLRLALGILSAPDSRDPRWVPAPLEGPAIDGPIRVAVVRDPLGAGVDP
                     HVRAGIERAAGWLADAGYEVVEAEPPQVGEATAAWVQAIYADVNTIWPHMEPVAGEGV
                     RAFIDACRATGVFQPVDQAAQLAAWIAVYQLGAAWGQFLDRHPIVLSPVSCERPWLVG
                     DDISRVGEIAQSMRMILPVNILGLPGCAVPVGADDGLPQGVQLIGGRFREDLLLDAAQ
                     AIEDRAPVLTPIQPRVAVTA"
     gene            2128..>3096
                     /locus_tag="VIU37_02670"
     CDS             2128..>3096
                     /locus_tag="VIU37_02670"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding protein"
                     /protein_id="HEY6012874.1"
                     /translation="MTTSPIKVGLVAELTGPLSFMGIADANVTRMVIDDINAGGGLLG
                     RPLQLFVEDGETNDAAAEAKAAKLVNEDRVDVIFGGIYSSTRQAITRSAVAAGRKLYL
                     YPEQYEGRERDPLIFCTGPVPAQQVEPLIPWLMQETGAKSFYLPSADYIWPHVLNENV
                     RRVVVANGGTIVGEEYFPLDHADYRQTIDRIMSSGTEVVFNTIVPPGLTPFLEQLYDA
                     GFTKRGGQIICTYFDENFLNLVPAEQVEGLYSCLDYYQCVSDPFSVRLLARYNERFPG
                     SAAFTAGSGCSGHYRALKLWEAAVNEAGSLDQQAVIAALDHAKLAEG"
BASE COUNT          460 a         1093 c         1107 g          436 t
ORIGIN      
        1 ggaccggcgg ctgatcgcct ccatgtcgtg ggtgaggtgg acgacgcgcg tcgccagggg
       61 gatctggtcg cccttggcgt gcgtcgggta gccgttgccg ttccagcgct cgtaggtgaa
      121 cccgaacgcg gcccgcacgt ccggccccag gtccagccgc tggatgagca tgtcgcccac
      181 ttcgcagccg gtcgcgaagt tgtggacggc ccagtcgtgg gcgccggcct ggagcgccct
      241 gatgatctcc gggtgctcgt cgggcgggtg gccggcggtg gcagccgcga ccatcgtgcg
      301 gccgacgtcg gcaggatcgg cggcatccat gaccagcgtc tggccgagga tcgcgatgtc
      361 gtccccgaac acggacgcca cctcgtgggc gtgcccggtg cagccgacgt agcgcagcag
      421 cgacacccag tagacggttc gccgcagctc ctcgtcaaag ccggcttcgt cacacagggc
      481 catcgccagc aggcacgagc ggagctggga atcgaatggc tggccgaacg cgttgtcctg
      541 cgcgagggcc agtgtcgcga cgagctctcc cagtcggagg gggtcggcag aaatggggtg
      601 tcctcccgat gtcgggtgca cccgacgcca caacgataca ggggccgatc caccagagca
      661 gggagagcgc cgtgaacgag ttgctgggca agggtgccgg agagctggcg aggatgatcg
      721 ccacacgaga cgtgacgtcg accgaggtcg tcgagactca cctcgcgcgg atcgccgagg
      781 tgaaccagga cgtcaatgcg atcaccgtga cgctggccga cgaggcgcgc gcggcggcgg
      841 cggcggtcga ccgctcggtg gctgcgggca ggccagttgg gccgctggcc ggggtgccgt
      901 tcaccgtcaa ggagaacatc gacgtcgcgg gctcggcgac gacctggggc gttgccgcgc
      961 tcgccgggca gatcgcctcg tccgacgcgc cgatggtcgc ccgcctgcgc gaggccggtg
     1021 ccatcccgct tgcccgcacc aacctccccg acttcgcgtt ccgctggcac accgagagcg
     1081 gccgcgcggg tcacacccgc aacccgtggg acccgacccg cacgcccggc ggctcgtcgg
     1141 gcggcgaggc ggtcgcgctg gcgacgggga tgacgccgct gggcctcggc aacgacctcg
     1201 gcggctcgct gcggatcccg gcgcagatgt gcgggatcac cgcgatcaag ccgtcacgcg
     1261 ggcgcgtcgc cgagggtgcc ggcaccgagc cggccgtcca gcccatctcg atccaggcga
     1321 cgatggtcgc gggccccatg gcccgtcgcg tcgcggacct gcggctggcc ctggggatcc
     1381 tgagcgcacc ggacagtcgc gacccgcgct gggtgccggc cccgctcgag ggcccggcca
     1441 tcgacggccc gatccgcgtt gcggtggtcc gcgacccgct gggcgcgggg gtcgatccgc
     1501 acgtccgggc cgggatcgag cgcgccgccg gctggctggc ggacgccggc tacgaggtgg
     1561 tggaggccga gccgccccag gtcggtgagg ccacggccgc ctgggtccag gccatctacg
     1621 ccgatgtcaa cacgatctgg ccgcacatgg agccggtcgc cggtgagggt gtccgggcgt
     1681 tcatcgacgc gtgccgggcg acgggtgtgt tccagcccgt cgaccaggcg gcgcagctcg
     1741 cggcctggat cgcggtctac cagctcgggg cggcctgggg ccagttcctc gatcggcacc
     1801 cgatcgtgct ctcgccggtg tcctgcgagc gtccgtggct cgtcggcgac gacatctccc
     1861 gggtgggcga gatcgcgcag tcgatgcgga tgatcctgcc cgtcaacatc ctgggcctgc
     1921 ccggctgcgc cgtgcccgtg ggcgcggacg acggcctgcc ccagggcgtg cagctgatcg
     1981 ggggccgctt ccgcgaggac ctcctgctgg acgccgccca ggcgatcgag gatcgcgcac
     2041 ccgtgctcac ccccatccag ccacgcgtcg ccgtgacggc gtaggcgtcc caatccaccc
     2101 gcacgaacaa ggaaggagcg tctcgccatg accacctcgc ccatcaaggt cggcctcgtg
     2161 gccgagctga ccggccccct gtcgttcatg ggcatcgcgg atgccaacgt cacccgcatg
     2221 gtcatcgacg acatcaacgc cggcggcggc ctgctggggc ggccgctcca gctcttcgtc
     2281 gaggacggcg agaccaacga cgccgcggcc gaggccaagg cggccaagct ggtcaacgag
     2341 gaccgcgtcg acgtgatctt cggcgggatc tacagctcga cccggcaggc gatcacgcgc
     2401 tcggccgtcg ccgcgggcag gaagctctac ctgtatccgg agcagtacga gggccgggag
     2461 cgcgacccgc tcatcttctg cacgggtccg gtcccggcgc agcaggtcga gccgctcatc
     2521 ccgtggctga tgcaggagac gggcgccaag tccttctacc tgccgtccgc cgactacatc
     2581 tggccgcacg tgctcaacga gaacgtccgg cgcgtcgtgg tcgcgaacgg cggcacgatc
     2641 gtaggggagg agtacttccc cctcgaccac gccgactacc gccagacgat cgacaggatc
     2701 atgtcgagcg ggaccgaggt ggtcttcaac accatcgtcc cgcccggcct gacgccattc
     2761 ctcgaacagc tgtacgacgc cggcttcacg aaacggggcg gtcagatcat ctgcacctat
     2821 ttcgacgaga acttcctgaa cctcgtaccg gccgagcagg tcgagggcct gtacagctgc
     2881 ctcgactact accagtgcgt cagcgatccg ttcagcgttc ggctgctggc caggtacaac
     2941 gagcggttcc caggcagcgc ggcattcacc gcgggcagcg gctgctcagg ccactaccgg
     3001 gccctgaagc tctgggaggc cgccgtgaac gaggccggct cgctcgacca gcaggcggtc
     3061 atcgccgccc tcgaccatgc gaagctcgcg gaagga
//
LOCUS       DATDDI010000188         1890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_545207, whole genome shotgun sequence.
ACCESSION   DATDDI010000188 DATDDI010000000
VERSION     DATDDI010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545207"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VIU37_02675"
     CDS             <1..627
                     /locus_tag="VIU37_02675"
                     /inference="COORDINATES: protein motif:HMM:NF012840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012875.1"
                     /translation="RQIVAVHHGEVPNDLHALQALPGVGPYTARAVAAIAFGQSTGAV
                     DTNVRRVLGRVLAGDPGAIPAAELQRVADGAVPGGRAGDWTHALMDLGATVCRPRRPA
                     CEGCPARAWCAYAAGPRPAQRDARAARRSTPSVAFAATSRWLRGRIVDRLRAAPDGEW
                     TTIDAPIGEHDEVAVRAALGALAFEGLIELDQGTEVAARGQRARLSTA"
     gene            727..1542
                     /locus_tag="VIU37_02680"
     CDS             727..1542
                     /locus_tag="VIU37_02680"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HEY6012876.1"
                     /translation="MPASTPMPAPAPDAAGSLPADDPSIFALDLRGLRQRWAARSELS
                     PISAETMTGTDLRAQALGYPQERLMEHAGTAVAAAVRALAVDLGRWGTGPIVILCGPG
                     NNGGDGFVAARRLALAGARVIVANVSADSRPRGDAAARNWDRIARDTGIDKVHLPVAR
                     DVAIFGQGIGKAAVVVDALLGTGVRGALRDPIRPAVEIITRARAMGVPVVAVDTPTAV
                     DLSSGEPSEPAVRADLTVTFHRPKTGLLTRRGAAYAGKILVAPIGIPPKADRG"
     gene            1535..1765
                     /locus_tag="VIU37_02685"
     CDS             1535..1765
                     /locus_tag="VIU37_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012877.1"
                     /translation="MVEPHDAGRQPGWIQVVVVAAIVVAVVLGAAMATSLLPTSVQEV
                     VFHTPLTILVLIVGTAWLLWRIARRGPGAPQP"
BASE COUNT          212 a          717 c          723 g          238 t
ORIGIN      
        1 cggcagatcg tggccgtcca tcacggggag gtgccgaacg acctgcacgc cctccaggcg
       61 ctacccggcg tcgggcccta cacggcccgg gcggtcgcgg cgatcgcctt cggccagtcg
      121 accggagcgg tcgacacgaa cgtccgacgg gtgctcggcc gggtcctggc cggtgacccc
      181 ggggcgatac ccgccgccga actccagcgg gtcgccgacg gcgcggttcc gggcggtcgg
      241 gcaggggact ggacgcacgc cctgatggat ctcggggcca cggtctgccg gccgcggcgg
      301 cccgcctgcg agggctgtcc ggcgcgggcg tggtgcgcct atgccgccgg tcctcggccg
      361 gcgcagcgcg acgcgcgggc tgcccggcgg tcgacgccgt cggtggcgtt cgccgcgacg
      421 tctcgctggc tccgtgggcg catcgtcgac cggctgcggg cggcaccgga tggggagtgg
      481 acgacgatcg acgcgccgat cggcgagcac gacgaggtgg ccgtccgggc cgctctcggc
      541 gcgctggcgt tcgagggact tatcgagctg gatcagggga cggaagtcgc cgcgcgcggg
      601 cagcgagcgc ggctgtcgac cgcctgagcg cacgaacgcc gccgagcgga ggtccggcgc
      661 cgccgggcgg tggtccggcg ccgccgggcg gtggtccggc gccgcgtcgg ctacgcttgg
      721 acgaccatgc ccgcctcgac gccgatgccc gcgccggccc cggacgcggc cggttcgttg
      781 ccggccgacg atccgtcgat cttcgcgctc gacctgcgcg gcctccgcca gcgctgggcc
      841 gcgcgctcgg agctgtcgcc gatctcggcg gagaccatga ccgggaccga cctgcgcgcc
      901 caggcactgg gttacccgca ggagcggctg atggagcacg ccgggaccgc ggtcgccgcg
      961 gccgtccggg cgctggccgt ggacctcggc cggtggggca cggggccgat cgtcatcctg
     1021 tgcggtccgg gcaacaacgg cggcgacggc ttcgtggcgg cccggcggct cgcgctcgcg
     1081 ggcgcgcggg tgatcgtcgc caacgtgtcc gcggactccc ggccccgcgg cgacgcggcc
     1141 gcccgcaact gggatcggat cgcccgcgat accggtatcg acaaggtcca cctgccggtc
     1201 gcccgcgacg tcgcgatctt cggccagggg atcgggaagg cggccgtcgt cgtcgacgcc
     1261 ctcctcggaa ccggcgtacg cggcgcgctg cgcgacccga tccgcccggc ggtcgagatc
     1321 atcacccgcg cccgggccat gggcgtgccg gtcgtggcgg tagacacgcc gaccgcggtc
     1381 gacctgtcga gcggggagcc gtcggagccg gccgttcggg ccgacctgac cgtcaccttc
     1441 caccggccca agacgggcct gctcacccgc cgcggcgccg catacgcggg caagatcctg
     1501 gtcgccccga tcggcatccc gccgaaggcc gatcgtggtt gagccgcacg acgccgggcg
     1561 gcaacccggc tggatccagg tcgtggtcgt ggccgcgatc gtcgtcgcgg tcgtgctcgg
     1621 cgccgccatg gccaccagcc tgctcccgac ctcggtccag gaggtcgtgt tccacacgcc
     1681 gctgacgatc ctcgtcctca tcgtcgggac cgcctggctc ctgtggcgga tcgcccggcg
     1741 cggaccggga gccccgcaac cgtgaccagc tcccccatga gcgacacagg ccagccggtg
     1801 ccggccgtga ccacgccgct ccagcgccgc gccgccgacc tggcctcgct cggccgcgag
     1861 acctgggacg tcgtcatcgt cggtggcggg
//
LOCUS       DATDDI010000189         2362 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_232901, whole genome shotgun sequence.
ACCESSION   DATDDI010000189 DATDDI010000000
VERSION     DATDDI010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232901"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VIU37_02690"
     CDS             <1..678
                     /locus_tag="VIU37_02690"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEY6012878.1"
                     /translation="ADITGPNIPLMMGLEGQPRASENNKIVPLERYGVKAISIQFFVP
                     EGQPIVWRGPLVGGAIQQFLRDVDWGELDYLVIDLPPGTSDAQLTLAQAVPISGAVLV
                     TTPQEVSLADVGKALAMFQRMSVPVLGLVENMTAFVCPHCGETTEIFGRGGGERFASA
                     HGLDYLGGIPLDITVRQGGDVGVPAVAQREPGPAATALTAIAKAVAARVSVRAVQAAA
                     QPVLTIS"
     gene            complement(654..1466)
                     /locus_tag="VIU37_02695"
     CDS             complement(654..1466)
                     /locus_tag="VIU37_02695"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6012879.1"
                     /translation="MTANLSGGLRLTVLGNASAAPHLDSPAAGFLVEWDTTRVLLDVG
                     QGVVRALQDLMDPHELTAVVIGHMHADHYLDLAGLRYLFPWGEPAERPLPVNLPPGGS
                     SRLAALATAISERVGFFDDAYAIREYDPSEPLRIGPLTIEFRRGRHYVPAWAMSVVAP
                     DGARLVYTGDTGPSDSVVDFACDADLLLVEAALRLSSYDDEERGHLTAEEAIDFAERS
                     RARAARIVHYPPSRRLELEALCEASGSPIRPAVPGLTMTVVPAEPQEMVRTG"
     gene            complement(1545..2003)
                     /locus_tag="VIU37_02700"
     CDS             complement(1545..2003)
                     /locus_tag="VIU37_02700"
                     /inference="COORDINATES: protein motif:HMM:NF013340.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HEY6012880.1"
                     /translation="MSPEPFRLTSTAFQDGGAIPRRFSCDGENVSPDLAWDGAPDGAR
                     AMVLTVIDPDARDFVHWLVYDMTGTPSGGLPLGVSVSPDAPPQGTNSFGKRGYGGPCP
                     PSGTHHYRFTLSALDTVLELTGAPRIDALEAAMAGHVLAEATLTGTYRRS"
BASE COUNT          329 a          830 c          886 g          317 t
ORIGIN      
        1 gccgacatca cgggtccaaa catcccgctg atgatgggtc tcgagggcca gccccgcgcg
       61 agcgagaaca acaagatcgt gccgctcgag cgctatggcg tgaaggccat ctcgatccag
      121 ttcttcgtcc ccgagggtca gccgatcgtg tggcgcggac cgctcgtcgg cggcgccatc
      181 cagcagttcc tgcgcgacgt cgactggggc gagctcgact acctcgtgat cgacctgccg
      241 ccgggcacct cggacgcgca gctcacgctc gcccaggccg tcccgatctc gggcgccgtg
      301 ctcgtgacga cgccccagga ggtgtcgctg gccgacgtcg gcaaggcact cgcgatgttc
      361 cagcggatga gcgtgccggt cctcggcctg gtcgagaaca tgaccgcgtt cgtctgcccg
      421 cactgcgggg agacgaccga gatcttcggg cggggcggcg gcgagcggtt cgcgagcgcc
      481 cacggtctcg actacctcgg cggcatcccg ctcgacatca ccgtccgcca gggtggcgac
      541 gtcggcgtcc cggccgtcgc gcaacgcgag cccggaccgg cggcgaccgc gctgaccgcg
      601 atcgcgaagg ccgtcgcggc ccgcgtcagc gtccgggcgg tccaggccgc ggctcagccg
      661 gtcctgacca tctcctgagg ctcggccggg accaccgtca tggtgaggcc cgggaccgcg
      721 ggccggatcg gggagcccga cgcctcgcac agggcctcga gctccagccg tctggacggc
      781 gggtagtgga cgatccgggc ggctcgcgcg cgggagcgct cggcgaagtc gatcgcctcc
      841 tcggccgtca ggtggccgcg ctcctcgtcg tcgtagctcg acagtcgcag cgccgcctcg
      901 acgagcagca ggtcggcgtc gcaggcgaag tcgacgaccg aatcgctcgg accggtgtcc
      961 ccggtgtaga cgagcctggc accatccggc gcgacgacgc tcatcgccca cgccggcacg
     1021 taatggcgac cgcgccggaa ctcgatcgtc agcggtccga tccggagcgg ctccgacggg
     1081 tcgtattcgc ggatcgcgta cgcgtcgtcg aagaagccga cccgttccga gatcgcggtc
     1141 gccagcgccg ccagccggct gctcccgccc ggcggcaggt tgaccggcag cggccgctcg
     1201 gccggctcgc cccacgggaa caggtagcgg agcccggcga ggtcgaggta atggtcggcg
     1261 tgcatgtggc cgatcacgac ggccgtcagc tcgtgcggat ccatgaggtc ctggagggcc
     1321 cggaccacgc cctggccgac gtcgagcagg accctggtcg tgtcccattc gacgaggaag
     1381 ccggccgccg gcgaatcgag atgcggggcg gcgctggcgt tgccgagcac cgtgaggcgg
     1441 aggccgcccg acagattggc agtcatgggc gccatggtag ggcgtgccgt cgagcgccaa
     1501 cccgccggca ggcgacgacg cgactgtcgg ctacccgaca gcgctcagct ccggcggtag
     1561 gttccggtga gcgttgcctc ggccagcacg tgaccggcca tcgccgcttc gagcgcatcg
     1621 atccgcgggg caccggtgag ctcgaggacg gtgtcgagcg cggacagcgt gaaccggtag
     1681 tggtgcgtgc cggacggcgg gcagggaccg ccgtagccgc gcttcccgaa gctgttcgtt
     1741 ccctgcgggg gtgcgtcggg cgatacggac accccgagcg ggagcccgcc ggaaggcgtc
     1801 ccggtcatgt cgtacacgag ccagtggacg aagtcccggg cgtccgggtc gatcacggtg
     1861 aggaccatcg cccgcgcgcc gtcgggcgcg ccgtcccagg cgagatcggg tgacacgttt
     1921 tcgccgtcgc agctgaaccg ccgggggatg gcgccgccgt cctggaaggc ggtactggtc
     1981 aggcggaatg gctcggggct catggtcgtc acctccgacg gtgtggggct cggagttccg
     2041 ggcattgcgg tcaccggcgc cccggtcggg ccgggcgtgg gcgacgcgcc ggacgccggc
     2101 gatcggctcg cggatgccgc cggaccgggg cttgcggggg cgccggaccc ggcgggggac
     2161 gagcaagcgc ccaggctcag ggcgagggcg acgaggacga tccccagcgt cgttcgcacg
     2221 tcgccattat ccgtcaggcc tcgggggccg ggcctcgcag cacttcgagc acgaacgcgg
     2281 cggctgccag tgccgccctc gagcgtccga gcccgccggt caggaagacc acccggctga
     2341 cctgacgctc ggctgccggg gt
//
LOCUS       DATDDI010000190         3257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_732358, whole genome shotgun sequence.
ACCESSION   DATDDI010000190 DATDDI010000000
VERSION     DATDDI010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_732358"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..931)
                     /locus_tag="VIU37_02705"
     CDS             complement(<1..931)
                     /locus_tag="VIU37_02705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012881.1"
                     /translation="MIAWNRRRRRLTAAGAAVIVALLVPALAAAHPLGNFTINHYAGV
                     RIEPDRILLDVVIDQAEIPAFQARLGFDTDGDGELSAAEVDAGRVTACRELARSLDLE
                     VGGTPQALELTEAGLAFPPGVGGLSTMREVCTFTAPAVRIADGTPVAFTDRSFAERLG
                     WREMVVDGSGVSVAATAGTLRTASISERLTRYPTTLLSQALADASVSVMVSPGGPALP
                     PLDIPDASPLPGMGAAQPADASTGGPPAVQAVVAGAVPGGVTAGELPSIFRTADLTPL
                     VLALSVLTAAALGAWHAVTPGHGKTLMAAYLVGT"
     gene            1073..1762
                     /gene="tmk"
                     /locus_tag="VIU37_02710"
     CDS             1073..1762
                     /gene="tmk"
                     /locus_tag="VIU37_02710"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEY6012882.1"
                     /translation="MIRPGAPNPRGWFITIEGPDGAGKTTQVERLAEHLQASGLDVLL
                     TREPGGTWLGEQLRHVLLARTGSAAPTDALTDAFLFNAARRQLVAEVIEPALATGRTV
                     LCARFADSTLAYQGYGAGISLERLRALEAVATDGLRPDLTILLDLPVEAGLTRKAPGD
                     VNRFEAEFDLAFHRRVREGFIALAVAEPVRFVVIDASRSPEDVSTAVNTAVDRLVARG
                     EPKPFAIRTHP"
     gene            1759..2355
                     /locus_tag="VIU37_02715"
     CDS             1759..2355
                     /locus_tag="VIU37_02715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6012883.1"
                     /translation="MTAADQPLPLRSSSAVDAADRAALLRIADGELAALEDLYDRYKT
                     MAYSIAYRITNDATLAEDVVQDAFLGAWRNAARYVEGRGSVKTWLLSIVHHRAIDAIR
                     RRRPTTELPDAETPTPAALTLPDVWAEVSAGLDAAMVRSALDSLSDVQREALELAYFG
                     GLTQGEIAERTGTPLGTVKSRMRLGLLAMRRSLEATST"
     gene            2352..3254
                     /locus_tag="VIU37_02720"
     CDS             2352..3254
                     /locus_tag="VIU37_02720"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEY6012884.1"
                     /translation="MSDPNVTPELTCDEVRDLAAGFVLGALDATEEAAVRAHLAAAGH
                     AGAHPEIVELGGVVPAFAEIVPIVEPPAGLKDRILSAAAADLEARSGVASVASAAAAA
                     SAAAAGAAPVAGPVTPPTPAPSPVAFPTAAERAVRRSRASTGTWLLRIAAVLAIAVLG
                     GWNLLLQNDLSAARSYERNVAAVLDAAARPGSLTAVLAGEGGTGAGLAAVDAAGNVSL
                     AVRNLAPTSGTSVYEAWVIASDGVPVPLGGFQVGSDGTASFRAGGLPTASGIVLALTL
                     EPGPGATTPTLPIVSKGVAAPAAG"
BASE COUNT          423 a         1186 c         1216 g          432 t
ORIGIN      
        1 gcgttcccac gaggtacgcg gccatcagcg tcttgccgtg gcccggagtc accgcgtgcc
       61 aggctccgag ggcggcggcg gtcaggaccg agagggccag cacgagcggc gtgaggtcgg
      121 ccgtccggaa gatcgatggc agctcgccgg cggtcacccc gcctgggact gcgccggcca
      181 cgacggcctg aacggcgggc gggccgccgg tcgaggcgtc ggccggctgc gcggcgccca
      241 tgccggggag tggcgaggcg tccgggatgt cgagcggcgg caacgccggc ccacccggcg
      301 acaccatcac gctcacgctg gcgtccgcga gcgcctgtga gaggagcgtg gtcgggtaac
      361 gggtcagccg ctcggagatg ctcgcggtcc ggagcgtacc ggcggtcgcc gcgacgctca
      421 ccccggaacc atcgacgacc atctcgcgcc agccgaggcg ctccgcgaag gaccggtccg
      481 tgaaggccac cggcgtcccg tcagcgatcc gcacggccgg tgccgtgaag gtgcacacct
      541 cgcgcatcgt cgacaggccg cccacgcccg gcgggaaggc caggcctgcc tcggtcagct
      601 cgagcgcctg cggcgtgcct ccgacctcga ggtcgagcga ccgcgcgagc tcccggcagg
      661 cggtcacgcg gccggcgtcg acctcggccg ccgacagctc accgtcgccg tcggtgtcga
      721 agccgagacg cgcctggaag gccgggatct cggcctggtc gatcacgacg tcgagcagga
      781 tccggtccgg ctcgatccgg accccggcgt agtggttgat cgtgaagttg ccgagcggat
      841 gggcggccgc cagggccggc acgaggaggg cgacgatgac ggcggcgccg gcggccgtga
      901 ggcggcgtcg acgccgattc caggcaatca cgatcggatg cgtccccagg cgttcaccgg
      961 cgccacgtcc gccgggctcg acgagtgttc gcggccggcc cgtccgtgga tcactccacg
     1021 acctccggcc ggccaagtat cgggcacatt cgccgtccgc tagactcgcc gcgtgattcg
     1081 tcccggggcg cccaacccac gcggctggtt catcacgatc gagggtcccg acggggccgg
     1141 caagacgacc caggtcgagc ggctcgccga gcacctgcag gcgtcgggtc tcgacgtcct
     1201 gctgacccgc gaacccggcg gcacctggct gggcgagcag ttgcgccacg tcctgctggc
     1261 ccggaccgga tcggcggccc cgaccgacgc cctgaccgac gcgttcctgt tcaacgccgc
     1321 gcggcgccag ctcgtggccg aggtgatcga gcccgcgctc gcgacgggcc ggacggtgct
     1381 gtgcgcgcgc ttcgccgact ccacgttggc ctaccagggc tacggcgccg gcatctcgct
     1441 ggagcgcctc cgggcgctcg aggcggtggc gaccgacggc ttgcggccgg acctgacgat
     1501 cctgctcgac ctgcccgtgg aggccggcct gacgcgcaag gcgccgggcg acgtcaaccg
     1561 cttcgaggcc gagttcgacc tggccttcca ccgtcgggtc cgggaagggt tcatcgcgct
     1621 ggccgtcgcc gagccggtgc ggttcgtggt gatcgacgcg tcgcgatcgc cggaggacgt
     1681 gtcgaccgcg gtcaacaccg ccgtcgatcg cctcgtcgcc cgcggtgaac cgaaaccgtt
     1741 cgcgatacgc acccatccat gaccgctgcg gaccagccgc ttccgctccg ttcgtcgtcc
     1801 gcggtggatg cggcggatcg cgcggcactg ctccgcatcg ccgacgggga gctcgccgct
     1861 ctcgaggacc tgtacgaccg atacaagacg atggcctact cgatcgccta ccgcatcacg
     1921 aacgacgcca cgctcgccga ggacgtcgtc caggacgcgt tcctgggagc ctggcggaat
     1981 gccgcccgct acgtggaagg ccgcgggagc gtcaagacct ggctgctgtc catcgtccat
     2041 caccgcgcga tcgacgccat ccgccggcga cgccccacga ccgagctgcc agacgccgag
     2101 acgcccacgc cggccgcgtt gacgctcccg gacgtgtggg ccgaggtttc ggccgggctc
     2161 gacgccgcga tggtccggtc ggccctcgat tcgctgtccg atgtccagcg tgaggccctc
     2221 gaactcgcct acttcggtgg cctgacgcag ggggagatcg ccgagcgcac ggggacgccg
     2281 ctcgggacgg tcaagagccg gatgcgactg ggtctgctgg cgatgcgacg gtcgctcgag
     2341 gcgacgtcca catgagtgat ccgaacgtga cgcccgagct cacctgcgac gaggtccgcg
     2401 acctggccgc ggggttcgtc ctgggggcgc tcgacgccac cgaggaggcc gccgtgcgcg
     2461 cgcatctcgc cgcggccggc catgccggtg cgcacccgga gatcgtggaa ctgggcgggg
     2521 tggtgccggc gttcgccgag atcgtgccga tcgtggagcc gccggccgga ctgaaggacc
     2581 ggatcctgtc ggcggccgcg gcggacctcg aggcacggag tggggtggcg tccgtggcga
     2641 gcgccgcggc ggccgcttcg gctgctgctg ccggtgcggc gccggtcgcc gggccggtca
     2701 cgccgccgac gccggctccg tcgccggtgg ccttcccgac ggccgcggaa cgagcggtcc
     2761 gccgatcgcg agcgagcacc ggcacgtggc tgctccggat cgccgcggtc ctcgccatcg
     2821 cggtgctcgg cggctggaac ctgttgctcc agaacgacct gtcggcggca cgctcgtacg
     2881 aacggaacgt ggccgcggtc ctcgacgcgg ccgcccggcc cggatcgctg accgcggtcc
     2941 tggccggtga gggcgggacc ggtgccggac tggccgccgt ggacgcggct gggaacgtgt
     3001 cgctcgccgt tcgcaacctg gcgccgacgt ccgggacctc cgtctacgag gcgtgggtca
     3061 tcgcgagcga cggcgtgccg gtgccgctcg gcgggttcca ggtcggcagt gacgggacgg
     3121 cgtccttccg tgccggcggg ctcccgacgg ccagcgggat cgtgctggcg ctcacgctcg
     3181 aaccgggacc cggggcgacc acgccgacgc tgccgatcgt ctcgaagggc gtcgcggccc
     3241 cggccgcagg ctaggcg
//
LOCUS       DATDDI010000191         1555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_441031, whole genome shotgun sequence.
ACCESSION   DATDDI010000191 DATDDI010000000
VERSION     DATDDI010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441031"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VIU37_02725"
     CDS             complement(<1..386)
                     /locus_tag="VIU37_02725"
                     /inference="COORDINATES: protein motif:HMM:NF014827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEY6012885.1"
                     /translation="MRTVEHHTEGTQTPMTTENVAAPINAWAVAQQQFDLAAERLHLD
                     EGMRRVLREPRRELTVHFPVKMDDGSVKVFTGYRVQHNLGRGPAKGGIRYHQDVSIEE
                     VKALAMWMTWKCAVVGIPYGGGKGGV"
     gene            complement(557..1423)
                     /locus_tag="VIU37_02730"
     CDS             complement(557..1423)
                     /locus_tag="VIU37_02730"
                     /inference="COORDINATES: protein motif:HMM:NF014679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005504 - fatty acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEY6012886.1"
                     /translation="MSGVAIVTDSASDYDPAKAASLGIAIVPLIVNFGSETYSAGVNM
                     STDQFWAKLKTPGSPFPTTAACSPGDFQIAYQKAFDEGAEGIVSIHVAGTLSGTIKAA
                     EIGKAMFRDRDIHVVDSMSASMGEGMLAELGVEMSNAGASAADIAAEVTRRRDDLQVY
                     LALETLEYLKRGGRISGAQAAIGTLLSLKPIIEIKDGKVEVAERIRTRSKARDRLVEL
                     LAARPMDRLSILHTTDAGVEEFAEELIAKVPGRIDRSKVSINLVGPSVGPHLGPGCVG
                     AVALYTEASRPA"
BASE COUNT          214 a          526 c          546 g          269 t
ORIGIN      
        1 atgacgccgc ccttgccgcc gccgtacgga atcccgacga ccgcgcactt ccaggtcatc
       61 cacatcgcga gggccttgac ctcttcgatg gagacgtcct ggtggtagcg gatgccgccc
      121 ttggcgggac cgcgaccgag gttgtgctgg acgcgatagc cggtgaagac cttcaccgag
      181 ccgtcgtcca tcttcacggg gaagtggacg gtcagctcgc ggcggggctc gcgcaggacg
      241 cgacgcatgc cctcgtcgag gtgcagccgc tccgcggcga ggtcgaactg ctgctgcgcg
      301 accgcccacg cattgatggg cgccgcaacg ttctcggtcg tcatgggtgt ctgggttccc
      361 tcggtgtggt gttcgacggt acgcatggtc cgatcaggcc ttgggccgac tcgtggcggc
      421 gagtatatcc gcgcaggcgt ggtcgccggg tggtctcgct accgtgtcgc aaccgtatcg
      481 caaccttggg acccgtccgt gggccgaacg tcccgaacct cccgggccgc tcgtcaggct
      541 cgccgtcgca gttccgtcag gccggtcggg aggcctccgt gtacagcgcc acggcgccga
      601 cgcagccggg cccgaggtgc ggcccgaccg acgggccgac gaggttgatc gagaccttcg
      661 accggtcgat ccggcccggg accttcgcga tgagctcctc ggcgaactcc tcgacgccgg
      721 cgtcggtcgt gtgcaggatc gagagccggt ccatcgggcg ggcggccagc agctcgacga
      781 ggcggtcgcg agccttgctg cgggtacgga tccgctccgc tacctcgacc ttcccgtcct
      841 tgatctcgat gatcggcttg agggagagca gcgtcccgat agcggcctgg gcgccgctga
      901 tccggccgcc gcgcttcagg tactcgagcg tctcgagcgc caggtacacc tgcagatcgt
      961 cgcgtcggcg cgtgacctcg gcagcgatgt cggccgccga cgcaccggcg ttcgacatct
     1021 cgactcccag ctcggcgagc atgccctcgc ccatcgacgc agacatcgag tcgacgacgt
     1081 ggatgtcgcg gtcccggaac atggccttgc cgatctcggc ggccttgatc gtgcccgaga
     1141 gcgtgccggc gacgtggatc gagacgatcc cctcggcgcc ctcgtcgaac gccttctggt
     1201 aggcgatctg gaagtcgccg gggctgcagg cggcggtcgt cgggaagggc gatcccggcg
     1261 tcttgagctt cgcccagaac tggtcggtgg acatgttgac gccggcggag tacgtctcgc
     1321 tgccgaagtt cacgatcagc ggcacgatgg cgatgccgag cgaagcggcc ttcgcggggt
     1381 cgtagtcgga cgctgaatcg gtgacgatgg cgacaccgct cacgggtagc cctcctcctt
     1441 cgctgccctg cgtggtctgc ggatcatacg ggccgaggat gccgctcagg cggcctcggc
     1501 gcgtggtgct cccgctacgc tgaccggcga tggatcgatc gctgtgggcc gtcct
//
LOCUS       DATDDI010000192         1719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_649050, whole genome shotgun sequence.
ACCESSION   DATDDI010000192 DATDDI010000000
VERSION     DATDDI010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649050"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..377)
                     /locus_tag="VIU37_02735"
     CDS             complement(<1..377)
                     /locus_tag="VIU37_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012887.1"
                     /translation="MERTVGRLGVLIAAAALIFGACGSSTTSNAPSGEASVAPSSEAS
                     AVASGEASAAPSAITAGSTGKPGDVNIVWFCCLGTGDAPEQVTVEEQVAEAFNAANPG
                     IHLSFQAYPYQGARDALSVQIGSG"
     gene            complement(397..1218)
                     /locus_tag="VIU37_02740"
     CDS             complement(397..1218)
                     /locus_tag="VIU37_02740"
                     /inference="COORDINATES: protein motif:HMM:NF019322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6012888.1"
                     /translation="MARFRLELGPIPLHHQVYLDLKAALDEGEWKPGDRLPTERDLAV
                     RYGCSLITIRRALGELVREGRMERTRGRGTFVLHPRIDRDFAGHLSFTEEMQTRGLDP
                     ETRLIAARPESAGEAVAEALDIEPGSPTLYLERLRLADGQPLLLEQVHLPAERFPGLL
                     ASDLERGSLYDLLTEGYGVRVARAREVLEPVLLHAREARLLGRRRGSPALLIEGIASS
                     ADGRPVEFGRTYVRGDRTRYYVERVVIRPHWMRSNEVGTQEEESNRAIADRQLTR"
     gene            1300..>1719
                     /locus_tag="VIU37_02745"
     CDS             1300..>1719
                     /locus_tag="VIU37_02745"
                     /inference="COORDINATES: protein motif:HMM:NF014148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose-6'-phosphate glucosidase"
                     /protein_id="HEY6012889.1"
                     /translation="MSSPARERIVGLKIAVVGGGSTYTPELIEGFVRRAARLPIDELV
                     LLDIDLERLDVVGGLAQRMLDRLDWVGRLTLTGDRDRAIDGADFVLVQLRVGGQATRL
                     VDETLPPRFGVIGQETTGAGGFAKALRTVPVVLELAEI"
BASE COUNT          229 a          609 c          624 g          257 t
ORIGIN      
        1 cccgagccga tctgcaccga cagggcgtcc cgggcgccct gatacggata ggcctggaag
       61 ctcaggtgga tgcccgggtt ggccgcgttg aacgcctcgg cgacctgctc ctccaccgtg
      121 acctgttccg gcgcgtcgcc ggtgccgagg cagcagaacc agacgatgtt gacgtcgccg
      181 ggcttgccgg tcgatccggc ggtgatcgcg ctcggcgccg ccgaggcctc gccgctcgcg
      241 accgccgacg cctcactgct cggcgcgacc gacgcttcgc cgctcggtgc gttgctcgtg
      301 gtggatgatc cgcaggcgcc gaagatcagc gccgccgcgg cgatgaggac gccaaggcgc
      361 ccgacggtcc gttccatgcc ttgcctccga ttccgtctac cgggtgagct gtcggtcagc
      421 gattgcacgg ttgctctcct cctcctgcgt cccgacctcg ttcgaacgca tccagtgcgg
      481 gcggatgacc acccgctcca cgtagtaccg ggtccggtcg ccgcggacgt acgtccgccc
      541 gaactccacc ggccgcccgt cggcgctgct cgcgatgccc tcgatgagga gcgccgggct
      601 gcctcgtcgc cggccgagga gccgggcctc gcgggcgtgc agcaggaccg gttcgaggac
      661 ctcgcgcgcc cgggcgacgc ggacgccgta gccctcggtc agcaggtcgt agagcgaccc
      721 gcgctcgaga tccgaggcga gcagcccggg gaaccgttcc gccggaaggt ggacctgctc
      781 gagcaggagc ggctggccgt cggcgaggcg cagccgctcc aggtagaggg tgggcgaccc
      841 gggctcgatg tcgagggcct cggcgaccgc ttcacccgcg gactcggggc gggccgcgat
      901 caggcgcgtc tcggggtcca ggccccgcgt ctgcatctcc tcggtgaacg agaggtggcc
      961 ggcgaaatcg cgatcgatcc gggggtgcag cacgaacgtt ccgcggccac gcgtccgctc
     1021 catgcgccct tcacggacga gctcgccgag ggcccgccgg atggtgatca ggctgcagcc
     1081 gtagcggacc gccaggtcgc gctcggtggg aagccggtcg ccgggcttcc actcgccctc
     1141 gtcgagggcg gccttgagat ccaggtagac ctggtggtgg agcgggatgg ggccgagctc
     1201 gagtcggaag cgggccatcg gcaggcgtgt gacctcgggg cgagggtcga agttccgggc
     1261 ttgcgcgagc ggcgattgct gataacgtta taagcaatcg tgtcaagccc cgctcgggag
     1321 cggatcgtgg gcctcaagat cgccgtcgtc ggaggcggca gcacctatac gccggagctg
     1381 atcgagggct tcgtccgccg cgctgcgcga ctcccgatcg acgagctcgt cctcctcgac
     1441 atcgacctcg aacggctcga cgtcgtcggc ggtctcgccc agcggatgct cgaccgcctc
     1501 gactgggtgg gccggctgac cctgacgggc gaccgcgatc gcgccatcga cggcgcggac
     1561 ttcgtgctcg tccagctccg cgtcggcggc caggccaccc gcctcgtcga cgagacgctg
     1621 ccgccgcgct tcggcgtcat cggccaggag acgaccgggg ccggtgggtt cgccaaggcg
     1681 ctacggaccg tcccggtcgt cctcgagctg gccgagatc
//
LOCUS       DATDDI010000193         1632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_378647, whole genome shotgun sequence.
ACCESSION   DATDDI010000193 DATDDI010000000
VERSION     DATDDI010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378647"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VIU37_02750"
     CDS             complement(<1..609)
                     /locus_tag="VIU37_02750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012890.1"
                     /translation="MTATARFLPRADLDRLFTALTADGRRVVGPTVVDGSIVHDELAS
                     FAELPKGWTAETAPGAYRLEPTGRDRLFDYNVGATSWKRFTHPSIVPLTRGRRDGHQV
                     VVEAVETDPPKLAFVGARACEIAALRIQDRAMRAGPLGDADHVARGDAALVVAVECAV
                     AASTCFCTSMGTGPEARGGYDLVLTELDEGFVVRAGSPDGADL"
     gene            complement(606..1079)
                     /locus_tag="VIU37_02755"
     CDS             complement(606..1079)
                     /locus_tag="VIU37_02755"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY6012891.1"
                     /translation="MTETLCALLTQTWFAADMPEDICERLSAIGELKEYPAGAAVVSE
                     GTTCRELGVILHGRIALRLALPGVGEQTILTIDDGDLFGWSALLPESIATSTGVTLVP
                     TTALVFDREPLAALMAANPEIASAIYPRVLVAVTRRLQATRTQLLDLYRAGHEPW"
     gene            1239..>1632
                     /locus_tag="VIU37_02760"
     CDS             1239..>1632
                     /locus_tag="VIU37_02760"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6012892.1"
                     /translation="MKILLAYDGGEPAHKALDLTADFATKFDASVAVVSVVPVHPGRV
                     PIDPWDDTPVHASQLAEAKRLLLGKGIEPALIERAGDPAHTIEQIAQEGGYDMVVVGS
                     RHLGAVSRVLQGSVSEHVATHAPATVVIA"
BASE COUNT          234 a          567 c          604 g          227 t
ORIGIN      
        1 gagatcggcc ccgtccgggc tcccggcccg caccacgaag ccctcgtcga gctcggtgag
       61 cacgaggtcg tacccgccgc gcgcctcggg ccctgtgccc atcgaggtgc agaagcaggt
      121 gctcgcggcc acggcgcact cgaccgccac caccagcgcg gcatcgccgc gcgcgacatg
      181 gtccgcgtca ccgagcggac cggcgcgcat cgcgcggtcc tggatgcgga gggcggcgat
      241 ctcgcaggcg cgcgcgccca cgaaggccag cttcggcgga tcggtctcga cggcctcgac
      301 gacgacctgg tggccgtccc gccggccgcg ggtcaggggc acgatcgacg ggtgggtgaa
      361 gcgcttccac gacgtcgccc cgacgttgta gtcgaacagg cggtcgcgcc cggtgggctc
      421 cagccggtag gcgccgggcg ccgtctcggc cgtccagccc ttgggcagct cggcgaagga
      481 ggccagctcg tcgtggacga tcgagccgtc gacgacggtc gggccgacga cgcggcggcc
      541 gtcggcggtg agggcggtga acagtcggtc gagatctgcg cggggcagga accgtgcggt
      601 ggcggtcacc acggctcgtg tccggcgcga tagaggtcga gcagctgggt gcgcgtggcc
      661 tgcagccggc gcgtcacggc gaccagcacc ctgggataga tcgcgctcgc gatctcgggg
      721 ttggcggcca tcagggcggc gagcggctcg cggtcgaaga cgagcgccgt cgtggggacg
      781 agggtgaccc ccgtcgacgt cgcgatcgat tccgggagca gggccgacca gccgaacagg
      841 tcgccgtcgt cgatggtcag gatcgtctgc tcgccgacgc ccgggagggc gaggcgaagg
      901 gcgattcggc cgtgcaggat cacgccgagc tcgcgacagg tcgtgccctc ggagaccacg
      961 gccgcaccgg ccggatactc cttgagttct ccgatcgccg acaggcgttc gcagatgtcc
     1021 tcgggcatgt ccgccgcgaa ccaggtctgg gtcaggaggg cgcacagggt ctctgtcatg
     1081 gccctcatgg tcagggcctc gtgacggccc gatcgagagc cattggtccc gcttccacgt
     1141 gactgtcggc cgtcgtttcg ccggtccctc gggagcatgc tcgcggtggt tgggcgggtc
     1201 cgacctggga cctgccgcct cggaaaggaa gccgtcggat gaagatcctc ctcgcctatg
     1261 acggcggcga gcccgcgcac aaggcgctcg acctgaccgc cgatttcgcc acgaagttcg
     1321 atgccagcgt cgcggtcgtg agcgtcgtac cggtccatcc cggccgcgtg ccgatcgacc
     1381 cgtgggacga caccccggtc catgccagcc agctggccga ggccaagcgg ctgctcctgg
     1441 gcaagggcat cgagccggcg ctcatcgagc gcgccggcga tccggcccac acgatcgaac
     1501 agattgccca ggagggcggc tacgacatgg tggtcgtcgg ctcgcgacat ctcggagcgg
     1561 tctcccgcgt cctgcaggga agcgtctcgg aacacgtcgc gacgcacgcg cccgccaccg
     1621 tggtgatcgc cc
//
LOCUS       DATDDI010000194         1728 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_191373, whole genome shotgun sequence.
ACCESSION   DATDDI010000194 DATDDI010000000
VERSION     DATDDI010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191373"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..>1728
                     /locus_tag="VIU37_02765"
     CDS             130..>1728
                     /locus_tag="VIU37_02765"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6012893.1"
                     /translation="MQRRRIARAMREPGRDGRLGRTVAALLGGLCLAIFLLVGATGLV
                     VSGVVGALSRDLPDPTRLDGLAFNQPTVVYDRSGKVVLATFQQEERRVVSFDAIPHLV
                     LDATTTAEDRSFWSNLGFDGTAIFAAIAQNASGSPERGASTITQQLVRARLLPAGLAG
                     PGEDRYLRKAKEIIQAIRVTNAFPGEAGKARIITAYLNEIFYGHGAYGVAAAAKIYFG
                     ISDLADLTPAQAALLAGLPKSPTTLDPYRYAKPDAKGRLIVPPDSPPAIRRNWILTGL
                     AAGARWTRLSQSELSAALAEPIVLARPTARTVRAGHFDQQVRRDLDRILGDPKAADTG
                     GYTVITTLDWRAQQLAEKWMTAAAIVPNLSVGGMDKWLTTMHVGAADRGWIRGLRGKD
                     VHDGALVALDYRTGDVLAYVGSAGFGRDSLASPQFSPKFDAAGDGLRQPGSAFKPVVY
                     ATAFDRRKLTPGSLLLDVTTEFDPAQHWAPHDADQLERGPVLVRGALQYSLNVPAIRA
                     LQRVGNAAVAATAAKLGIRFQGGHT"
BASE COUNT          270 a          620 c          571 g          267 t
ORIGIN      
        1 gcatgcaact cggctcgtcg agggccaatc gactccgata ggccccgctg agcaccatgg
       61 cccatggccg ccgcgcgtat gggtccgggg agttcgaggc accgcgaaac cccccgcgcc
      121 ggacgaatcg tgcaacgacg ccggatcgcc cgggctatgc gcgagccggg ccgggacggc
      181 agactcggcc ggaccgtcgc ggccctattg ggtggtttgt gtctcgcgat cttcctgctc
      241 gtcggggcga ccggattggt cgtcagcggc gtcgttggag cgctgtcccg ggatctgccc
      301 gatcccacgc gccttgatgg gctcgcgttc aaccagccga ccgtggtcta cgaccggagc
      361 ggcaaggtcg tgctcgcgac cttccagcag gaggaacgcc gggtcgtctc gttcgacgcg
      421 attcctcatc tggtcctcga tgccacgacg acggcagagg atcgaagctt ctggtcgaac
      481 ctgggttttg acggcacggc gatcttcgcg gcgatcgccc agaacgcttc gggctcgccg
      541 gaacgcggcg catcgacgat tacccagcag ctcgtccggg cccgtctcct gcccgcgggg
      601 ctcgcgggtc ctggcgaaga ccgctacttg cgcaaggcta aggagatcat ccaggccatc
      661 cgggtgacca acgcctttcc cggcgaggct ggcaaagctc ggatcatcac cgcctacctc
      721 aatgagatct tctacggcca cggcgcctac ggcgtcgccg ccgcagcgaa gatctacttc
      781 gggatcagcg atctcgccga tctgacgccg gcccaggccg ccttgctcgc cggtcttccg
      841 aagtcgccga ccacgctcga cccgtatcgc tacgccaagc ccgacgccaa gggccgcctg
      901 atcgtgccgc ccgattcacc acccgcgatc cgtcgtaact ggatcctcac cggccttgcc
      961 gcgggtgccc ggtggacccg gctgtcgcag agcgaactga gcgcggcgct ggccgagccg
     1021 atcgtgctcg cccgcccgac cgcgcgaacc gtccgtgcgg gccatttcga ccaacaggtt
     1081 cgtcgtgacc tggaccgcat cctcggcgac ccgaaggccg ccgacaccgg gggctacacg
     1141 gtgatcacaa ccctcgattg gcgcgcccag cagttggccg agaaatggat gacggcggcg
     1201 gcgatcgtgc ccaacctgtc ggtcggcggg atggacaagt ggctcacgac gatgcacgtc
     1261 ggggccgccg atcgcgggtg gatccgcgga cttcggggca aggacgtcca cgacggcgcc
     1321 ctcgtggcgc tcgactatcg aaccggcgac gtcctggcct acgtgggcag cgccgggttc
     1381 gggcgggaca gcctggcaag cccgcagttc tccccgaagt tcgacgcggc gggcgatgga
     1441 ctccgccagc ccggctcggc attcaagccg gtcgtctacg ccaccgcttt cgaccgacgg
     1501 aagctgaccc cgggaagcct gctcctcgac gtgacgaccg agttcgaccc cgcgcaacac
     1561 tgggcgccgc acgatgccga ccagctcgag cgcggtccgg tcctggttcg cggggccctc
     1621 caatactccc tcaacgtgcc ggcgatccgg gcactccaac gggtgggcaa cgcggccgtc
     1681 gccgcgacgg cggccaagct cggcatcagg tttcagggcg ggcacact
//
LOCUS       DATDDI010000195         1742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_108036, whole genome shotgun sequence.
ACCESSION   DATDDI010000195 DATDDI010000000
VERSION     DATDDI010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108036"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VIU37_02770"
     CDS             <1..554
                     /locus_tag="VIU37_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012894.1"
                     /translation="RALPAVAGADVSVGLPDAVMAVRIEERQPILAWTVGETRYIADG
                     VGRVFATIAKGAELPAGVAIVDDRRASADAMAIGTDLDAVDLDVATRLGSLTPDDIGS
                     TAQRLTVAVTESDGFVVVAPGAWTAVFGFYSPATRPTDMIPAQVRLLRSLLEGREGSL
                     LRIILASGTDGTYVPKPTPKASR"
     gene            711..1034
                     /locus_tag="VIU37_02775"
     CDS             711..1034
                     /locus_tag="VIU37_02775"
                     /inference="COORDINATES: protein motif:HMM:NF018632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small basic family protein"
                     /protein_id="HEY6012895.1"
                     /translation="MLLPLAGLLVGVLLGLVLNVNVGIELSRYSAVAILAALDSVLGA
                     VRAELDSVYNNRIFISGFVTNAIVAVTLTFIGDRLGLDLYLVALITFGLRIFNNVALI
                     RRHFI"
     gene            1043..>1742
                     /gene="ftsA"
                     /locus_tag="VIU37_02780"
     CDS             1043..>1742
                     /gene="ftsA"
                     /locus_tag="VIU37_02780"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEY6012896.1"
                     /translation="MVEGVLVALDVGTSKVCALIGEIGRDGRLTVIGHGTVPSSGLKR
                     GAVVNIEQTVRSIRDAVERAERLSGWKIDKAFVGVGGAQVESLNSTGQVSVAAHTREV
                     SRDDIRRAVEQARTIPIPSNREVLHVERRGFTVDGQEGVKDPLGMSALRLEVETHIVT
                     APQTAVQNLMKCVAQAGVKIDELVVNALASAEAVANETERELGVAVADVGAGTIDLAM
                     FNEGSPFRTSVLPVG"
BASE COUNT          247 a          613 c          619 g          263 t
ORIGIN      
        1 tgcgcgcgct tccggccgtc gccggcgcgg acgtctccgt tggcctcccg gatgcggtca
       61 tggccgtccg aatcgaggag cgccagccga tcctcgcctg gacggtcggc gagacccggt
      121 acatcgccga cggcgtgggc cgggttttcg cgacgatcgc caagggggcc gagctgcccg
      181 cgggcgtggc catcgtggac gaccgtcgcg cctctgcgga cgcgatggcg atcggcaccg
      241 acctcgatgc cgtcgacctg gacgtcgcga cccggctcgg gagcctcacg cccgacgaca
      301 tcggcagcac ggcccagcgg ctgacggtcg ccgtgaccga gagcgacggc ttcgtcgtcg
      361 tggcgccggg agcgtggacc gcggtctttg gcttctacag cccggcgacc cgcccgacgg
      421 acatgatccc ggcccaggtc cgcctgctgc gaagcctcct ggagggccgc gagggatcgc
      481 tcctgcggat catcctcgcg tccgggaccg acggaacgta cgtgcccaag ccaacgccga
      541 aagcctcgcg ctgatggccg gcggggcgtc gcggtcctcg gacggccggc tggcggggac
      601 gtcacctcgg tcctcggtgg gtggctcgct gctcgcggcc gagccggcgt acctcgcacc
      661 gccgtgtgca ttaccctttg cgcgaacgca ccgcagcgag gacggttccg ttgctcctcc
      721 ccctggcagg cctgctggtg ggcgtcctgc tcgggctcgt cctcaacgtc aacgtcggca
      781 tcgagctcag ccgctactcg gcggtggcga tcctcgccgc gctcgattcc gtgctcgggg
      841 cggtgcgggc agagctcgac agcgtctaca acaaccggat cttcatctcg ggcttcgtga
      901 ccaacgcgat cgtggcggtc acgctgacgt tcatcggcga tcggctgggc ctggacctgt
      961 acctggtggc gctcatcacg ttcggactgc ggatcttcaa caacgtcgcc ctgatccggc
     1021 ggcacttcat ctgaggtaag gcgtggtaga aggagtcctc gtcgcgctcg acgtcgggac
     1081 gagcaaggtc tgcgcactga tcggcgagat cgggcgcgac ggccggctga cggtcatcgg
     1141 ccacggcacc gtgccctcgt cgggcctgaa gcgcggagcg gtcgtcaaca tcgagcagac
     1201 cgtgcgctcc atccgggacg cggtcgagcg ggccgagcgg ctgtccggct ggaagatcga
     1261 caaggccttc gtcggcgtcg gcggcgcgca ggtcgagagc ctgaactcca cgggccaggt
     1321 gtccgtcgcg gcccacaccc gcgaggtcag ccgtgacgac atccgccggg cggtcgagca
     1381 ggcccggacc atcccgatcc cgtcgaaccg cgaggtgctc cacgtcgagc ggcgcggctt
     1441 caccgtcgat ggccaggagg gcgtgaagga cccgctcggg atgagcgcgc tccgcctcga
     1501 ggtcgagacg cacatcgtca cggcgcccca gaccgcggtc cagaacctga tgaaatgcgt
     1561 cgcccaggcc ggcgtgaaga tcgacgagct cgtcgtgaac gccctcgcct cggcggaggc
     1621 ggtcgccaac gaaacggagc gggagctcgg cgtcgccgtt gccgacgtcg gagccgggac
     1681 catcgacctc gccatgttca acgagggctc gccgttccgg acgagcgtcc tgcccgtcgg
     1741 cg
//
LOCUS       DATDDI010000196         2455 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_45650, whole genome shotgun sequence.
ACCESSION   DATDDI010000196 DATDDI010000000
VERSION     DATDDI010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45650"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..304)
                     /locus_tag="VIU37_02785"
     CDS             complement(<1..304)
                     /locus_tag="VIU37_02785"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY6012897.1"
                     /translation="MVTGLGAIMPIGNDFPTYWANLTAGVTGTRLITSFDTTNHEVKI
                     AAEVLGFDPATVMDPKMARRMSRFIHLAMAAGGEAVADAGLDFEAMTQEQRDRVGVV"
     gene            complement(505..987)
                     /locus_tag="VIU37_02790"
     CDS             complement(505..987)
                     /locus_tag="VIU37_02790"
                     /inference="COORDINATES: protein motif:HMM:NF014819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012898.1"
                     /translation="MGYGSAADGWDMIQPIEAGVGAARAMKMALERRGVPADEVDLIN
                     PHGTSTPLGDKREAEAIWTVFGPRAAGAKRSLAISATKSMTGHMMGAAGAFEAFATVK
                     SVAEQCAPATINYRDPDPDCDLWVVGETTSLPIRYALSNNIGLGGHNGAVIFKRYDGD
                     "
     gene            complement(1036..1779)
                     /locus_tag="VIU37_02795"
                     /pseudo
     CDS             complement(1036..1779)
                     /locus_tag="VIU37_02795"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
     gene            complement(1806..>2455)
                     /locus_tag="VIU37_02800"
     CDS             complement(1806..>2455)
                     /locus_tag="VIU37_02800"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:NF012901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEY6012899.1"
                     /translation="LVAAGAISLEDGVRLVRERGRLMQASGQGRDGAMAALIGLDDAR
                     LPELVATASASGVFVVANRNAPGQVVVSGERAAIEAGAELARTMGARRAIVLPVSVAA
                     HSPLMAEAADGMRRALADVTFHDPEPALLANADGQPLTTGEACRAELVDHLTAGVDWI
                     RIVEDMVAAGVTTFVEVGPGRVLTGLIKRIAPDAELIAADDPATADRLLELAAAT"
BASE COUNT          332 a          883 c          879 g          361 t
ORIGIN      
        1 cgaccacgcc gacgcggtca cgctgctcct gggtcatcgc ctcgaagtcc agcccggcgt
       61 ccgcgacggc ttcgccgccg gcggccatcg ccaggtggat gaagcggctc atccggcggg
      121 ccatcttcgg gtccatgacc gtggccgggt cgaagccgag gacctccgcg gcgatcttca
      181 cctcgtgatt ggtggtatcg aaactggtga tcagccgcgt gccggtcaca cccgccgtga
      241 ggttggccca gtacgtcggg aagtcgttcc cgatgggcat gatcgcgccg aggccggtga
      301 ccaccgctcg gcgggcagga tcctgttcag gcacttggca ctccccgcag ggcggtcagg
      361 cgagacaccg cggcaacggc gccgcgctcg gctcgagatg ggcaggcccc gattgtagcg
      421 gtgcgcgccg ggcgagggcg acggaccggg gcgtcgccgc tggcgcggag gccgaagacg
      481 ggccgcgcca gcggcatgcg cctgtcagtc gccgtcgtag cgcttgaaga tgaccgcgcc
      541 gttgtgaccg cccaggccga tgttgttcga cagcgcgtag cggatcggca gcgacgtcgt
      601 ctcgccgacc acccagaggt cgcagtcggg atcggggtcg cggtagttga tcgtcgccgg
      661 ggcgcactgc tccgccacgg acttgaccgt ggcgaaggcc tcgaacgcac cggcggcgcc
      721 catcatgtga ccggtcatcg acttggtggc gctgatcgcg agcgaccgtt tcgcgcccgc
      781 ggcacgcggc ccgaacacgg tccagatggc ctcggcctcg cgcttgtccc cgagcggtgt
      841 cgaggtccca tgcgggttga tcaggtcgac ctcgtcggcc ggcacgccgc gacgctcgag
      901 cgccatcttc atggcccggg cggcgccgac gcccgcttcg atcggctgga tcatgtccca
      961 gccgtccgcg gccgacccgt agcccacgac ctcggcgtag atccgggcac cacgagcctt
     1021 cgccagctcg aggtcctcga ggaagagcga cccggcgccc tcgccgagga cgaacccgtc
     1081 gcgggtgagg tcgaacgggc gggacaccgt ctcggggccc tcgcccggcc ggggcatccc
     1141 catgccgcgc atgttcgaga agccggcgtg gccgacttcg aggagcggcg cctccgtcga
     1201 accgctgatg acggcgatgc agtccccgcg ccggatcgcc tcggcggcct cgcccacgtt
     1261 gtgggtcccg gtcgcgcagg ccgacaccac gcacatgttg tggccgatcg ccccggtctc
     1321 gatggcgatc atcccctagc aactgtcggt cagggcgttg gcgatgaacg tcgggctcac
     1381 cgcgcgcgga ccccggctat ggagcgtggc gtagttgtcg atcatcagcg tctgcccgcc
     1441 cgcgccggag ccgaagatca cgccgacctc ggtgcggttc tcgtcggtca gctcgaagcc
     1501 cgaatccgcg agcgcctgct tggccgcggc caccccgaaa tggaggctcg actcgctgcg
     1561 cctcgccgcc ttggcatcca tccaatcgga ggcggtgaag tcgcggacct cgccggccag
     1621 cttggcttcg tatggggccg tgtcgaactt ggtgatgggc ccgagcccgg acacgccgtt
     1681 gaccaggttg gaccagacgg tcgtgacgtc gttgccgatg gggctgatga cgccgagtcc
     1741 ggtgacggcg acgcgccgtt cgtagtcagg cttgcgcaac gtgcggttct cctttggggg
     1801 acggctcagg tggcggcggc gagttcgagc aggcggtcgg cggtcgccgg gtcgtcggcc
     1861 gcgatcagct cggcgtccgg ggcgatccgc ttgatcaggc cggtcagcac ccggccgggg
     1921 ccgacctcga cgaaggtcgt gaccccggcg gccaccatgt cctcgacgat ccggatccag
     1981 tcgacgcccg ccgtgaggtg gtcgaccagc tccgcccgac aggcttcccc ggtcgtcagc
     2041 ggctggccgt cggcgttggc cagcaacgcg ggctcgggat cgtggaaggt cacgtccgcc
     2101 agggcccgcc gcatgccgtc ggctgcctcg gccatcagcg gggagtgggc ggccaccgac
     2161 accggcagga cgatcgcgcg cctggcgccc atcgtccgag cgagctcggc gccggcctcg
     2221 atcgcggctc gctcgcccga cacgacgacc tggcccgggg cgttccggtt ggccaccacg
     2281 aacacgccgc ttgccgaggc cgtcgcgacg agctcgggga gccgcgcatc gtccagcccg
     2341 atgagcgccg ccatggcgcc gtcccgaccc tgtccggagg cctgcatcag gcggccgcgc
     2401 tcgcggacca gccgaacgcc gtcctcgagc gagatcgccc ccgccgccac gagcg
//
LOCUS       DATDDI010000197         1952 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_628575, whole genome shotgun sequence.
ACCESSION   DATDDI010000197 DATDDI010000000
VERSION     DATDDI010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_628575"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1796)
                     /gene="ligD"
                     /locus_tag="VIU37_02805"
     CDS             complement(<1..1796)
                     /gene="ligD"
                     /locus_tag="VIU37_02805"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEY6012900.1"
                     /translation="MPLDEYRRKRDFARTPEPPAGAVATTGGSRTGRYVVQRHRATRL
                     HYDFRLEIDGVLVSWAVPKGPTLDPGVRRMAVHVEDHPIEYFDFEGVIPARQYGAGDV
                     IVWDWGTWEGEAPTLDGRAAVEAGELKFRLDGEKLKGRFTIVRTGGRRRKGDDPGARA
                     FEDDAGDQWLLIHKRDEASVPGWDAEDFPQSVKTGRTNDDVKAARDALWNGQAPAAAA
                     EIDLSGAVLAAMPSSIEPMLATLASKSFSDPDWLYEIKWDGFRIQAVVNDKRVRLLTR
                     NLKDGATYFPGLAGTPSWIEAREAIVDGEVVALDEDGRPDFGLLQERLGDVSAKGLVY
                     QVFDLLYLDGRSLLKVPLEDRKRLLQSVLRAHPRVRFAAHVVGDGEAFYKAAQDRELE
                     GIIAKLRRSGYEPGRRSAAWLKIKVRPEQELVVGGWTPGEGNARDLGAVAVGVYDDGR
                     LRFSGKVGSGFDGRTRRLIRERLADLETGTPAFDPAPPRDYRGRWGGELKNVHWVRPE
                     LVIRAELGGWSRDGMVRQAAFKGIEEGRDPKTVSRERAVATAAAVKAAEAAAPEPPAR
                     AEAGGAGPAARRGRAGREDGSLGAARATTGKPP"
BASE COUNT          237 a          727 c          701 g          287 t
ORIGIN      
        1 ggcggcttgc cggtggtcgc gcgggcggca ccgagcgagc cgtcctcgcg acccgctcgg
       61 ccccgacggg ccgcaggccc agccccgccc gcctccgccc gagccggtgg ctccggagcg
      121 gccgcctcgg ccgccttcac ggcagccgcg gtggcgaccg cgcgctcgcg ggagaccgtc
      181 ttggggtcgc gcccctcctc gatgcccttg aaggcggcct ggcggaccat gccgtcgcgt
      241 gaccagcccc cgagctcggc ccggatcacg agctcgggcc tgacccagtg gacgttcttg
      301 agctcgccgc cccagcgccc gcggtagtcg cgcggcggcg ccggatcgaa tgccggggtc
      361 ccggtctcga gatcggccag gcgctcgcgg atcagccgtc tcgtccggcc atcgaacccc
      421 gatccgacct tcccgctgaa ccggagccgg ccgtcgtcgt agacgccgac cgccaccgcc
      481 ccgaggtcgc gggcgttccc ctccccgggc gtccagccac cgaccacgag ctcctgctcg
      541 ggccggacct tgatcttgag ccacgcggcc gagcggcggc cgggttcgta tccggagcgg
      601 cggagcttgg cgatgatccc ctcgagctcc ctgtcctgcg ccgccttgta gaacgcctcg
      661 ccgtcgccga ccacgtgcgc ggcgaaccgc acgcggggat gggcccgcag gacgctctgg
      721 aggaggcgct tgcggtcctc gagcgggacc ttgaggaggg agcggccgtc gaggtagagc
      781 aggtcgaaca cctggtagac gaggcccttg gccgacacgt ccccgaggcg ctcctggagc
      841 agcccgaagt cgggccgacc gtcctcgtcc agggcgacca cttcgccgtc cacgatcgcc
      901 tcgcgcgcct cgatccagct gggcgtgccg gccagccccg ggaagtaggt ggcgccgtcc
      961 ttgaggttgc gggtcagcag ccgcacgcgc ttgtcgttga cgaccgcctg gattcggaag
     1021 ccgtcccact tgatctcgta cagccagtcg gggtcgctga acgacttcga ggccagggtc
     1081 gcgagcatcg gctcgatgct cgacggcatc gcggcgagga ccgcgccact caggtcgatc
     1141 tcggcagcgg cggccggcgc ctggccgttc cagagcgcgt cccgggcggc cttgacgtcg
     1201 tcgttggtgc gcccggtctt gacgctctgc gggaagtcct cggcgtccca gcccgggacg
     1261 gacgcctcgt cacgcttgtg gatgagcagc cactggtccc ccgcgtcgtc ctcgaaggcc
     1321 cgggcgcccg gatcgtcgcc cttccgccgg cgcccgccgg tccggacgat cgtgaagcgc
     1381 cccttcagct tctccccgtc gaggcggaac ttgagctcgc ccgcctcgac ggcggcccga
     1441 ccgtccagcg tgggcgcctc gccttcccag gttccccagt cccagacgat gacgtcgccg
     1501 gcgccatatt gccgggcggg gatgacgccc tcgaagtcga agtactcgat cgggtggtct
     1561 tcgacgtgga cggccatgcg gcggacaccg gggtccaggg tcgggccctt cggcacggcc
     1621 cacgacacga ggaccccgtc gatctcgagc cggaagtcgt agtggagccg cgtcgcccgg
     1681 tggcgctgga cgacgtagcg gccggtgcgt gacccgcctg tggtcgcgac cgcgccggcc
     1741 ggtggctccg gcgtcctggc gaagtcccgt ttcctgcggt attcgtcgag gggcatcagg
     1801 cggtcagtgt gcccgaaacc cgatcggcgg tcagcccacg gcccggatgg acgggcaact
     1861 aggcgtgcct gtgccggcgg aagaccccat gctcacgcgg cggcgtgtcg gcggctgcct
     1921 cgccttcgtc ggtgggcggt cggggctgga gg
//
LOCUS       DATDDI010000198         1854 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_316235, whole genome shotgun sequence.
ACCESSION   DATDDI010000198 DATDDI010000000
VERSION     DATDDI010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316235"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1854
                     /gene="leuS"
                     /locus_tag="VIU37_02810"
     CDS             <1..>1854
                     /gene="leuS"
                     /locus_tag="VIU37_02810"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEY6012901.1"
                     /translation="FDWTKEVVTADPSYYRWNQWLFLRFLEAGLAYRATSAVDWCPND
                     GTLAREQVEGADRHCWRCGAPVEKRDLAQWFLRTTAYADELLDFSGIDWPEPVKVMQT
                     NWIGRSEGGEIEFTTAPSDHHAGGEPIRVFTTRPDTLFGATFMVLAPEHPLVAALAAP
                     DRRAEVEAYVARARAATEIERLSTDRDKTGVAIGAEAVNPVNDERIPIFVADYVLAGY
                     GTGAIMAVPAHDERDFAFAKQFGLPIRQVVAPDGAEGANAELVAAYVAHSTGERLVNS
                     GRYSGMPADEAGRAIVAALGERGLGKAAVTYRLRDWLISRQRYWGTPIPIIYCERCGT
                     VPVPEEDLPVRLPDTVDYRGVGVNPLTHDESFVNTACPRCDGPARRETDTMDTFIDSA
                     WYWYRYLSPEKRGGPIDVGLAERWTPVDQYTGGAEHAVMHLLYAREFTKMLRDIGLLH
                     QDEPFKRLFNQGQILGADGVRMSKSRGNVEDPDALVGKYGADTVRLFLMFMGPWDQGG
                     PWSDSGIGGVHRFLVRVWALALDPHRVEPGDPNAGRLAAGESETAAEAAIRRITHQTL
                     AEVTADYEAFRFNTMVARLMELSNALYRYRGTPVAGGPAWDEAIRLLLLML"
BASE COUNT          269 a          651 c          668 g          266 t
ORIGIN      
        1 cgttcgactg gacgaaggag gtcgtcaccg ccgacccgag ctactaccgc tggaaccagt
       61 ggctgttcct ccgcttcctg gaggccgggc tggcctaccg ggccacctcg gcggtcgact
      121 ggtgtccgaa cgacgggacg ctggcacgcg agcaggtcga aggcgccgac cggcattgct
      181 ggcgctgcgg ggcgccggtc gagaagcgcg atctggccca atggttcctt cggacgaccg
      241 cgtatgccga cgagttgctc gacttctcgg ggatcgactg gcccgagccg gtcaaggtca
      301 tgcagaccaa ctggatcggc cggtccgagg gcggggagat cgagttcacg accgctccgt
      361 ccgaccacca cgccggcggc gagccgattc gggtcttcac gacccggccg gacacgctgt
      421 tcggggcgac gttcatggtc ctcgcccccg agcatccgct ggtcgccgcg ctggccgcgc
      481 ccgaccggcg cgccgaggtc gaggcgtacg tggcccgggc ccgtgcggcg accgagatcg
      541 agcggctgtc gaccgaccgc gacaagaccg gcgtcgcgat cggcgccgag gcggtcaacc
      601 cggtcaacga cgagcggatc ccgatcttcg tggccgacta cgtcctggcc ggctacggca
      661 ccggcgcgat catggcggtg ccggcccacg acgagcgcga cttcgcgttc gcgaagcagt
      721 tcgggctgcc gatccgccag gtcgtggcgc cggacggggc cgagggtgcg aatgcggagc
      781 tggtcgccgc ctatgtcgcc cactcgaccg gcgagcggct ggtcaacagc ggtcgctact
      841 ccggcatgcc cgccgacgag gccgggcggg cgatcgtcgc cgcgctcggc gagcgcggcc
      901 tcggcaaggc ggcggtcacg taccgcctgc gggattggct catcagccgc cagcgctact
      961 ggggcacgcc gatcccgatc atctactgcg agcgctgcgg gacggtgccc gtgccggagg
     1021 aggacctgcc ggtccgcctg ccggacacgg tcgactatcg cggcgtcggc gtgaacccgc
     1081 tgacccacga cgagtcgttc gtcaacacgg cctgccctcg ctgcgacggg ccggccaggc
     1141 gcgagaccga cacgatggac acgttcatcg actcggcctg gtactggtat cgctacctct
     1201 cgcccgagaa gcgcggcggc ccgatcgacg tcgggctggc ggagcgctgg accccggtcg
     1261 accagtacac cggtggggcg gagcacgcgg tcatgcacct gctctacgcc cgcgagttca
     1321 cgaagatgct ccgggatatc ggcctcctgc accaggacga gccgttcaag cggctgttca
     1381 accagggcca gatcctgggt gccgacgggg tccggatgag caagtcccga gggaacgtcg
     1441 aggatcccga cgccctcgtc ggcaagtacg gggccgacac ggtccggctg ttcctgatgt
     1501 tcatggggcc gtgggaccag ggcggcccgt ggagcgacag cggcatcggc ggcgtccacc
     1561 ggttcctggt tcgcgtctgg gccctcgccc tcgatccgca tcgcgtcgag ccgggcgacc
     1621 cgaacgccgg gcgcctggcg gccggcgagt ccgagactgc ggccgaggcg gcgatccggc
     1681 ggatcacgca ccagaccctc gcggaggtga cggccgacta cgaggccttc cggttcaaca
     1741 ccatggtcgc gcgcctcatg gagctgtcga acgccctgta tcgataccgc ggcaccccgg
     1801 tcgcgggcgg tccggcctgg gacgaggcca tccggctcct gctgttgatg ctcg
//
LOCUS       DATDDI010000199         1505 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_233076, whole genome shotgun sequence.
ACCESSION   DATDDI010000199 DATDDI010000000
VERSION     DATDDI010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233076"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1493)
                     /locus_tag="VIU37_02815"
     CDS             complement(<1..1493)
                     /locus_tag="VIU37_02815"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF001616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0032549 - ribonucleoside binding [Evidence
                     IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEY6012902.1"
                     /translation="MDVSPKQVVSVATALIPFLEHDDANRALMGSNMQRQAVPLLEPE
                     SPIVGTGMEGRAALDSGQVLVARRGGLVTSVTAERIHIETDTGELDVYPVLKFVRSNQ
                     GTCINQRPIVDVGARVAAGQPIADSSSTQQGELALGRNVLVAFMSWEGGNYEDAIVIS
                     DRLVRDDLFTSIHIEKHEMESRDTKLGPEEITRDIPNVGEESLKDLDEEGIVYIGAEV
                     RPGDILVGKITPKGETELTAEERLLRAIFGEKAREVKDSSLRLPHGERGKVVEVREFR
                     RELNDDLQPGVNRLVRVSVAQKRKISVGDKMAGRHGNKGVIAKILPAEDMPFLPDGTP
                     VDIVLNPLGVPSRMNIGQILETHLGWALHEKGLKAATAVFDGATEHDIRQELTEAGLP
                     DDGKTELRDGRTGEPFDRRITVGYIYMLKLHHLVEDKIHARSTGPYSLITQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAANILQELLTVKSDDVLGRVQTYEAIVKG"
BASE COUNT          201 a          508 c          515 g          281 t
ORIGIN      
        1 cccttgacga tcgcctcgta cgtctggaca cggcccagga cgtcgtccga cttcacggtc
       61 agcagctcct ggaggatgtt cgcggcccca taggcctcga gcgcccagac ctccatctcg
      121 ccgaaccgct ggccgccgaa ctgcgccttg ccgcccagcg gctgctgggt gatcaggctg
      181 tatgggccgg tggaccgggc gtggatcttg tcctcgacga ggtgatggag cttcagcatg
      241 tagatgtagc cgacggtgat ccggcggtcg aacggctcgc ccgtccggcc gtcgcggagc
      301 tcggtcttcc cgtcgtcggg aagacccgcc tcggtgagct cctggcggat gtcgtgctcg
      361 gtcgcgccgt cgaagacggc cgtggcggcc ttgaggccct tctcgtgcag cgcccagccc
      421 aggtgtgtct cgaggatctg gccgatgttc atccggctcg gcacgccgag cgggttgagg
      481 acgatgtcga cgggcgtccc gtccggcagg aacggcatgt cctcggccgg caggatcttg
      541 gcgatcaccc ccttgtttcc gtgacggccg gccatcttgt cgccgacgct gatctttcgc
      601 ttctgggcaa cggagactcg gaccaggcga ttgacgcccg gctggagatc gtcgttgagc
      661 tcgcggcgga actcgcgaac ctcgaccacc ttgccgcgct cgccgtgggg caatcgcagc
      721 gagctgtcct tcacctcgcg cgccttctcg ccgaagatcg cccgcaggag gcgctcctcg
      781 gcggtcagct cggtctcgcc cttgggcgtg atcttgccga ccaggatgtc gccggggcgg
      841 acctcggcgc cgatgtagac gatcccctcc tcgtcgaggt ccttgagcga ttcctcgccg
      901 acgttgggga tgtcccgggt gatctcctcg gggccgagct tggtgtcgcg agactccatc
      961 tcgtgcttct cgatgtggat gctggtgaac aggtcgtcgc ggacgaggcg gtcgctgatc
     1021 acgatcgcgt cctcgtagtt gccgccctcc cagctcatga acgccaccag gacgttgcgg
     1081 ccgagcgcca gctcgccctg ctgggtggag ctggagtcgg cgatcggctg gccggcggcg
     1141 acgcgcgccc cgacatcgac gatcgggcgc tggttgatgc aggtgccctg gttgctccgg
     1201 acgaacttga ggacggggta gacgtccagc tcgcccgtat cggtctcgat gtggatccgc
     1261 tcggccgtca cgctggtgac caggccgcca cggcgggcga ccagcacctg gcccgagtcg
     1321 agcgccgccc ggccctccat gccggtgccg acgatcggcg actccggctc gaggagcggc
     1381 acggcctgac gctgcatgtt cgagcccatc agtgctcggt tcgcgtcgtc atgctcgagg
     1441 aatgggatga gcgccgtcgc cacggagacg acctgctttg gcgacacgtc catgtactcg
     1501 atctg
//
LOCUS       DATDDI010000200         5188 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_149830, whole genome shotgun sequence.
ACCESSION   DATDDI010000200 DATDDI010000000
VERSION     DATDDI010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149830"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..1322
                     /locus_tag="VIU37_02820"
     CDS             42..1322
                     /locus_tag="VIU37_02820"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012903.1"
                     /translation="MTPLDSRGARRRYLALIALRWLPTGLLIPVGVLLMLSRGLSLTE
                     IGLVYSVQGFVVLALELPTGGLSDSLGRRPTLIVATLIGILSLATLTLAHSFPVFVGA
                     MVLQGIYRALDSGPLEAWYVDATLAADPGARIESGLGAGSSVLAVAIAGGALLSGALV
                     ALAPVPAIETLALPLVIALGLYVVNLGAIVALMRETASPRGPRAIATSVRAVPSVVRD
                     GLALLRSSRVLLALILVEGLWGFAMVTFEQLFPIRLSDVVGSTQGAAAMMGPVSSAAW
                     FVAAGGAAVIATVSARVGVARSAALLRILQGATIVAMGVLAGPIGVVTAYLACYAVHG
                     ASNPMHTTLLHRQVDSAHRTTVLSMNSMVGQPAGAIGAIVLSALADGTSLPTAMIVGG
                     IVCALAAPLYLPALRAERRHDSAELDRMAVADRV"
     gene            1333..1599
                     /locus_tag="VIU37_02825"
     CDS             1333..1599
                     /locus_tag="VIU37_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012904.1"
                     /translation="MKGDRIEALVDTGQGVQTFEISATRAGRRIEVTTSRGVVEVREV
                     TRSGQTVRTGRFMTSRLVALVEHPAADERGRVEISTSHRIQPGG"
     gene            complement(1658..2626)
                     /locus_tag="VIU37_02830"
     CDS             complement(1658..2626)
                     /locus_tag="VIU37_02830"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF006089.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HEY6012905.1"
                     /translation="MTATALGGDAAFAALTERHRRELHVHCYRMLASFDEAEDAVQET
                     MLRAWGSRDRFDGGSLFRAWLYRIATNVCLDSLRRRSRRLTSLGSFAEVPWLQPYPDR
                     LLDEIVPTADHEQPEAQVVERETIELVFLAALQLLPPRQRAALIARDVLGWSAAETAS
                     LLGTSVPAANSALQRARATMQQHLPSRRAEWRAGEPSAEEKALLDGFIDAHQRGDVAL
                     AVSIASKDLRITMPPQPFLFEGLDVIEPLLTGAFGEEGGEWRLVPTRANRMPTAASYL
                     RARGDDTFRAFKFDVLRVVDGKIAEITTFGAELFPAFGLPLVLEDG"
     gene            complement(2623..3042)
                     /locus_tag="VIU37_02835"
     CDS             complement(2623..3042)
                     /locus_tag="VIU37_02835"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6012906.1"
                     /translation="MNWTLELIVVPVSDIDRSKAFYADQVGFSMDVDHSAGEDFRVVQ
                     LSPPGSACSIALMKNQPTPPGGLHGLHLCVEDIEAARAQLVDRGVDASEPFFFDETGQ
                     HPGLDPERRSYATFLTFHDPDGNTWLVQEKQPVDAAA"
     gene            complement(3139..3516)
                     /locus_tag="VIU37_02840"
     CDS             complement(3139..3516)
                     /locus_tag="VIU37_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012907.1"
                     /translation="MPINSNLVRVFQLTEPVEGRAGGAWVFRYHGEDVLTDPGGGNPE
                     PFSWNDQAHQPIDFPVRTREEIAGKLRLNPAKLALVQRSDPSFPAPIATFRDGPVWSA
                     AAIAAWAPTPVPPPTRERGVPRG"
     gene            3666..>5188
                     /locus_tag="VIU37_02845"
     CDS             3666..>5188
                     /locus_tag="VIU37_02845"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6012908.1"
                     /translation="MEEAQRIAHVGSWERDIASGALWWSDESCRIMGIEPGTFAGTLE
                     AFLGFIHPDDRNMATLTPAQLESETTVDSEYRIVRPDGTVRVVHETAEIVRDTAGTPI
                     RLVGTCLDITERVEAEHERALLASAVEQTADSIWMQDLDNNVSYVNLAFTSTYGYTPD
                     EIIGKHASIVDSHRHPISYFDEIWATARAGKTWTGAIVNRRKDGSLFEVEAVISGIRD
                     ASGRIMGYMQTDRDVTRERALEGALERNARERESIEVALNRIDSSAPPEVIATTACTE
                     ILRFSGVDSAMVLILEPDLGWVLAHVGTGTPNVPVGAAIPASRLAYLRERAVGGPWVE
                     AWRLRPEEYAFIDAVEPPQRHSRLYAPFAGPGDTIGLIGLLDYDPAAADSLIERLPAL
                     ATFGSIVGTLIRPGLGTRRREAADRTAIQAVIDTGAFTPFFQPIVDLWDGSVVGHEAL
                     TRFRDGVAPNLMFRAASRIGLGMDLESACLHASIAASDRLPPNTYLSLNASPELVLSG
                     "
BASE COUNT          725 a         1881 c         1818 g          764 t
ORIGIN      
        1 gaggtccaca tccacgcgtt cccgatcccg gagctgaagc gatgactcct ctcgattcgc
       61 gaggcgcgcg acgccgctac ctcgccctga tcgcattgcg ctggctgccg accggcctgc
      121 tgatccccgt cggcgtgctc ctgatgctgt cgcgcggcct gtcgctgacc gagatcggcc
      181 tcgtctactc ggtccagggc ttcgtggtcc tcgcgctgga gctgccgacc ggcggcctgt
      241 ccgactcgct cggtcgccgg ccgaccctca tcgtggccac gctcatcggc atcctgtcgc
      301 tggcgacgct gaccctcgcc cactccttcc cggtcttcgt cggcgcgatg gtcctgcagg
      361 ggatctaccg ggcgctcgac agcggaccac tcgaggcctg gtacgtcgac gcgacgctcg
      421 cggccgatcc gggtgccagg atcgagtccg gcctgggcgc cggcagcagc gtcctcgccg
      481 tggcgatcgc gggcggtgcg ctgctgtcgg gcgcgctcgt cgccctggcc ccggtgccgg
      541 ccatcgaaac actcgcgctg cccctcgtca tcgcgctcgg tctgtacgtc gtgaacctgg
      601 gcgccatcgt cgccctcatg cgcgagacgg cgtcgccccg cggaccgcgc gcgatcgcga
      661 cctccgtccg ggcagtaccg agcgtggtcc gggacggtct cgcgctgctt cggtcgtcgc
      721 gcgtgctcct cgccctgatc ctcgtcgagg gcctgtgggg cttcgcgatg gtcaccttcg
      781 agcagctctt cccgatccgc ctgtccgacg tggtcggctc gacccagggc gcggccgcga
      841 tgatgggccc ggtcagctcg gcggcctggt tcgtcgcggc cggcggcgcc gccgtcatcg
      901 cgaccgtcag cgcccgcgtc ggcgtcgccc gttcggccgc gctgctccgg atcctgcagg
      961 gggccacgat cgtcgccatg ggcgtgctgg ccggcccgat cggcgtcgtc acggcctatc
     1021 tcgcctgcta cgcggtccac ggggcctcga acccgatgca cacgacgctg ctccaccgcc
     1081 aggtcgacag cgcgcatcgc acgactgtcc tgtcgatgaa ctcgatggtc ggccagccgg
     1141 ccggggcgat cggcgcgatc gtcctgtcgg cactcgccga cgggacgtcg ctgcccacgg
     1201 cgatgatcgt cggcggcatc gtctgcgcgc tggcggcgcc gctctacctg ccggcgctcc
     1261 gagccgagcg gcggcacgac tcggccgagc tcgatcggat ggcggtcgcg gaccgggtat
     1321 agagtgcgcg ccatgaaggg cgatcggatc gaggcgctgg tcgacacggg ccagggcgtc
     1381 cagaccttcg agatcagcgc cacccgggcc gggcgacgca tcgaggtgac cacctcgcgc
     1441 ggcgtcgtcg aggtgcgaga ggtcacccgg agcggccaga ccgtgcggac cggccggttc
     1501 atgaccagcc ggctggtcgc gctcgtcgag catccggcgg cggacgagcg cggccgggtc
     1561 gagatcagca cgagccaccg gatccagccc ggcggctgag ggccgaggca cggccgccgg
     1621 caccgcggcc gcccgacgca cccgtcagtc ccgagaccta gccgtcctcg aggacgagcg
     1681 gcagcccgaa cgccgggaac agctccgcgc cgaacgtcgt gatctcggcg atcttcccgt
     1741 ccacgacccg gagcacgtcg aacttgaacg cccggaacgt gtcgtcgccc ctcgcccgga
     1801 gatagctcgc cgccgtcggc atccggttgg cccgggtcgg gaccagccgc cactccccgc
     1861 cctcctcgcc gaacgcgccg gtcaggagcg gctcgatgac gtcgagccct tcgaacagga
     1921 acggctgcgg cggcatcgtg atccggagat ccttcgaggc gatcgacacc gccagcgcca
     1981 cgtcaccgcg ctggtgcgcg tcgatgaacc cgtcgagcag cgccttctcc tcggcgctcg
     2041 gctcgccggc ccgccattcg gcgcgccgcg acgggagatg ctgctgcatc gtggcccgcg
     2101 cccgctggag tgcgctgttg gccgccggga cgctcgtccc gaggagagag gcggtctccg
     2161 cagccgacca tccgaggacg tcccgggcga tcagcgcggc ccgctgccgg ggcggcagca
     2221 gttgcagcgc ggcgaggaag acgagctcga tcgtctcgcg ctccacgacc tgggcctcgg
     2281 gctgctcgtg atcggcggtc gggacgatct cgtcgagcag ccggtcgggg tacggctgga
     2341 gccacggcac ctcggcgaac gaaccgagcg acgtgaggcg gcgcgaccgt cgccggagcg
     2401 agtcgaggca gacgttcgtg gcgatccggt agagccacgc ccggaacagc gacccgccgt
     2461 cgaaccggtc tcggctgccc cacgcccgga gcatcgtctc ctggaccgcg tcctccgcct
     2521 cgtcgaacga ggcgagcatc cggtagcagt ggacgtggag ctcgcgccgg tggcgctcgg
     2581 tgagggccgc gaaggcggca tccccaccga gcgcggtcgc ggtcatgcgg ccgcgtccac
     2641 gggctgcttc tcctggacca gccaggtgtt cccgtcggga tcgtggaagg tcaggaaggt
     2701 cgcgtagctc cggcgctcgg gatccagccc ggggtgctgg ccggtctcgt cgaagaagaa
     2761 cggctcgctg gcgtcgacgc cacggtcgac cagctgcgcc cgcgccgcct cgatgtcctc
     2821 gacgcacagg tgcaggccat ggaggccgcc cggcggggtg ggctggttct tcatcagggc
     2881 aatcgagcag gccgagccgg gcgggctcag ctgcacgacg cggaagtcct caccggcgct
     2941 gtggtcgacg tccatgctga acccgacctg gtccgcgtag aacgccttcg atcggtcgat
     3001 gtccgacacg gggacgacga tgagctcgag tgtccagttc atgtgcctgc ggcctccttg
     3061 ggtcatcggc gggtgccgat ctctggcagt acaacgtcgg gccgcggaaa actcatcggt
     3121 cgcgcgcgat cgcgcggttc agcctctcgg gacgccccgt tcgcgagtgg gaggcggcac
     3181 cggcgtgggc gcccaggccg cgatggccgc ggcggaccag accggcccgt cgcggaacgt
     3241 ggcgatcggc gccgggaagg aggggtcgga gcgctggacc agggcgagct tggccgggtt
     3301 cagccgcagc ttgccggcga tctcctcgcg cgtcctgacc gggaagtcga tcggctggtg
     3361 tgcctggtcg ttccacgaga acggctccgg gttgccgccg cccggatcgg tcaggacatc
     3421 ttcgccgtga tagcggaaca cccatgcgcc gccggcacga ccttcgaccg gttcggtcag
     3481 ctggaagacc cgcacgagat tcgagttgat cggcacgctt gaagcatgac cctgcgtgcc
     3541 gcgctgtcaa atcacgggcg ggccgaccgg ccacacaccc ggacgtttgg gccataccca
     3601 cgatcgggtc catcgcgcac cgttgggagc gtatgcagct ggcgacaccc tcgcacacga
     3661 gccacttgga agaggcccag cggatcgccc atgtcgggag ctgggagcgg gacatcgcga
     3721 gcggtgccct gtggtggtcc gacgagtcgt gccggatcat ggggatcgag cccgggacct
     3781 tcgccggcac cctcgaggcg ttcctcggct tcatccatcc cgatgatcgc aacatggcca
     3841 cgctgacccc ggcccagctg gagagcgaaa ccacggtcga ctccgagtac cggatcgtcc
     3901 ggcccgacgg caccgtccgc gtcgtccacg agaccgccga gatcgtccgc gacacggccg
     3961 gcacgccgat ccgcctggtc ggcacctgcc tggacatcac cgagcgcgtc gaggccgagc
     4021 acgagcgagc gctcctcgcc tctgccgtcg agcagacggc ggattcgatc tggatgcagg
     4081 acctcgacaa caacgtgagc tacgtcaacc tcgccttcac cagcacgtat ggctacacgc
     4141 cggacgagat catcgggaag cacgccagca tcgtcgacag ccaccggcac ccgatcagct
     4201 acttcgacga gatctgggcc acggcacggg caggcaagac gtggaccggc gccatcgtca
     4261 accggcgcaa ggacggcagc ctgttcgagg tcgaggccgt catctcgggg atccgggatg
     4321 ccagcggccg gatcatgggc tacatgcaga ccgatcgcga cgtcacccgg gagcgagccc
     4381 tggagggcgc gctcgagcgc aacgcccgcg aacgcgaatc gatcgaggtc gccctgaacc
     4441 gcatcgactc gtcggcgccg ccggaggtga tcgccaccac ggcgtgcacc gagatcctgc
     4501 ggttctccgg cgtcgactcg gcgatggtgc tgatcctgga gcccgacctg ggctgggtcc
     4561 tggcgcacgt cggcacgggc accccgaacg tgccggtcgg tgccgccatt ccggcatcgc
     4621 gcctggccta ccttcgcgag cgcgccgtgg gcgggccatg ggtcgaggcc tggcggctcc
     4681 gacccgagga atacgccttc atcgacgccg tcgaaccacc acagcggcac agccgcctgt
     4741 acgcgccgtt cgcggggccg ggcgacacga tcggcctgat cgggctgctc gactacgacc
     4801 cggcggcggc cgattcgctc atcgagcgcc tgccggctct ggccaccttc ggctcgatcg
     4861 tcggcacgct gatccggccc gggctcggga cccgccgccg cgaggcggct gaccggaccg
     4921 ccatccaggc ggtcatcgac acgggcgcct tcacgccgtt cttccagccg atcgtggacc
     4981 tgtgggacgg ctcggtggtg ggtcacgagg cgctcacccg gttccgggac ggtgtcgccc
     5041 cgaacctgat gttccgggcg gcgtcgcgga tcggtctcgg gatggacctc gagagcgcct
     5101 gcctgcacgc ctcgatcgcg gcgagcgacc gcctgccgcc caacacgtac ctgagcctca
     5161 acgcctcgcc cgagctcgtg ctgtcggg
//
LOCUS       DATDDI010000201         4861 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_295459, whole genome shotgun sequence.
ACCESSION   DATDDI010000201 DATDDI010000000
VERSION     DATDDI010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4861
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295459"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2242
                     /locus_tag="VIU37_02850"
     CDS             <1..2242
                     /locus_tag="VIU37_02850"
                     /inference="COORDINATES: protein motif:HMM:NF015177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012909.1"
                     /translation="SYQRREVSVVTLQASAGAPPSAVALLETYALLGLTDRLPELFRD
                     WQGCILIRISVTNHGAEPATLHLLPTLWFRNTWSWGRHHARPALTAVQSSVDGKVVRA
                     DHAQLGTYHLVAAGSPDLLFTENESNAERLWSAANATPYVKDGISATVVDGLAGRVNP
                     NGVGTKVAVRYLLTLEAGATEAVLLRLGKGPARSPLPDADAVFDARIAEADTFFATLT
                     GNGLTRDEALVQRQAFAGLIWNKQWYHLDVAEWLDGDPASAPPSASRLHGRNSDWREL
                     NTADVLSMPDSWEYPWFAAWDLAFHCLPLALLDPAFAKNQLVLLTREWYMHPNGQLPA
                     YEWAFSDVNPPVHAWAAWRVYKIDRRISGVADRAFLERIFHKLLLNFTWWVNRKDVDG
                     HNVFQGGFLGLDNIGVFDRSAPLPVDGHLGQADGTAWMGMYSLNMLAIALELAREDPV
                     YEDIATKFFEHFLYIAGALNGVGVESVPLWDESDEFFYDTLHLATGQNVPLKVRSLVG
                     LIPMLAVETLEPGLLEQMPGFRRRMRWFLANRPALSALVPSWETPGLGERRLLALVHG
                     HRMKALLRRMLDEDEFLSGHGIRSLSRAHLAEPYILDIGGTRNTVAYEPAESRSGVFG
                     GNSNWRGPVWFPINYLLIEALQKFDHYYGPEFAVECPTGSGRLASLGEVAEELGDRLI
                     SLFTLDAGGRRPSLGPEGPGEDPLFFEYFHGDTGAGLGASHQTGWTALVAKLLEARGR
                     HRAAKA"
     gene            2239..4224
                     /locus_tag="VIU37_02855"
     CDS             2239..4224
                     /locus_tag="VIU37_02855"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEY6012910.1"
                     /translation="MTGASAGRPFVELGPDVCGDLETSIRDEWLVTNGLGGYAFGTVA
                     GPPTRVYHGLLVAALAPPVGRTVLVGGLLEWAVVDGERVALHALEHADGRIVGDGYRR
                     LVSVRLDGMRPVFTYAIGDVRIEKRIWMAEAANTTYVRYDSVGEDRPIELELTPLTTF
                     RDHHETRREADGIPGGPLRVLAPDGSFAPLGSQPHGRWVRDIRHRQETARGLPDRSDL
                     WAPGAARFTMSAGHPATLILTAEPADPQDAGLALAAAAGRERDLLETAGVGGASDFVR
                     DLVLAADQFLVRRDIPLDGDRMEPGRTVIAGYPWFNDWGRDTMISLPGLCLSTGRHAE
                     AATILRSFARFVRDGLLPNNFPDHAGEVPEYHTIDASVWYPLAVRAHAVASGSSALID
                     ELLPTLRSILDAHIAGTRFGIGMDPADGLLRGGAEGYQLTWMDARVDGWVVTPRRGKP
                     VEIQALWINSLRAVGGWLVERGDPDGAGARYLDLADRAAAAFVQRFWRPELGYLADVV
                     DGPDGDDASLRPNQVLALSVPHPLVEGEMAAAVLDAVGRALAVPLGLRSLAPGDPAYR
                     PAFQGDRRFRDAAYHQGTVWTWLIGPYAESVARVRGDPAAGLEILRPFEAHLRTAGLG
                     SVSEILEPEPPFEPRGCPFQAWGVAEVLRVWRALGGN"
     gene            complement(4472..4696)
                     /locus_tag="VIU37_02860"
     CDS             complement(4472..4696)
                     /locus_tag="VIU37_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012911.1"
                     /translation="MNEEDRTREGEAAGREPRPVIERIGLAAIALVLAAMFGAVAVAS
                     WAGGELFLAAMGAIGCLMTMWVGALTLIRG"
BASE COUNT          662 a         1783 c         1688 g          728 t
ORIGIN      
        1 ctcctaccag cgtcgcgaag tcagcgtcgt caccctccag gcgtccgcgg gggctcctcc
       61 ctccgcggtg gccttgctcg agacgtacgc ccttctcggc ctcaccgatc ggctgcccga
      121 gctcttccgg gactggcaag gatgcatcct catccggatc tcggtgacca atcacggagc
      181 cgagccggcc acgctccacc tgctgcccac gctctggttc cgcaacacct ggtcgtgggg
      241 gcgccaccat gcccgcccgg cgctgacggc cgtccaatcg tccgtcgacg gcaaggtcgt
      301 gcgcgccgat catgcgcagc tgggcacgta ccacctcgtg gcggccgggt cgcccgacct
      361 cctcttcacc gagaacgagt cgaacgccga gcgactctgg agcgccgcca atgcgacgcc
      421 gtacgtcaag gacgggatct ccgcgaccgt cgtcgacggc ctggccggcc gcgtcaatcc
      481 gaacggcgtc gggacgaagg tggcggtgcg gtacctgctg accctggagg ccggcgcaac
      541 ggaggccgtg ctgctgcgac tggggaaggg ccctgcccga tcgcccctcc cggatgccga
      601 cgccgtcttc gacgcccgga tcgcggaggc ggacaccttc ttcgccacgc tgacaggcaa
      661 cgggctcacg cgcgacgagg cgctggtcca gcgccaggcg ttcgcgggat tgatctggaa
      721 caagcagtgg tatcacctcg acgtggccga gtggctcgac ggcgatcccg cctcggctcc
      781 tccgtccgcg tcccgtctcc acggccgcaa cagcgactgg cgcgagctca acacggccga
      841 cgtcctgtcg atgcccgatt cctgggagta cccgtggttc gcggcgtggg acctagcctt
      901 ccactgcctg ccgctggctc tgctcgaccc ggcctttgcc aagaaccagc tggtgctcct
      961 gacccgcgag tggtacatgc acccgaacgg ccagctgccc gcgtacgaat gggcgttctc
     1021 ggacgtcaac ccgcccgtcc atgcctgggc cgcgtggcgg gtctacaaga tcgaccggcg
     1081 gatctccggg gtcgccgacc gcgcgttcct ggagcggatc ttccacaagc tgctgctcaa
     1141 cttcacctgg tgggtgaacc gcaaggatgt ggacgggcac aacgtcttcc agggagggtt
     1201 cctgggtctc gacaacatcg gcgtcttcga tcgaagcgcg ccgttgcccg tcgacggtca
     1261 cctcggccag gccgacggca cggcctggat gggcatgtac tcgctgaaca tgctggcgat
     1321 cgccctggag cttgcgcgcg aggacccggt ctacgaggac atcgcgacca agttcttcga
     1381 gcatttcctg tacatcgcgg gggcgctcaa cggcgtcggc gtcgaatccg tcccgctgtg
     1441 ggacgagtcg gacgagttct tctacgacac gctccacctg gcgacgggcc agaacgtccc
     1501 cctcaaggtg cgatcgctgg tcgggttgat cccgatgctc gcggtcgaga cgctcgaacc
     1561 cgggctgctc gagcagatgc cgggcttccg gcggcgcatg cgctggttcc tggccaatcg
     1621 cccggcgctg tcggcgctcg tgccgtcctg ggagacgccg gggctcggcg agcgacggct
     1681 gctcgccctc gtccacgggc accggatgaa ggcgctcctg cgccggatgc tcgacgagga
     1741 cgagttcctg tccggccacg ggatccggtc gttgagtcga gcgcacctcg ccgagccgta
     1801 catcctcgac atcggcggca cccgaaacac ggttgcctac gagccggccg aatcgcggtc
     1861 tggcgtgttc ggcggcaact cgaactggcg gggcccggtc tggttcccga tcaactacct
     1921 gctgatcgag gcgctccaga agttcgacca ctactacggc cccgaattcg cggtcgaatg
     1981 cccgaccggc tcggggcggc tggcctccct gggggaggtc gcggaggagc tcggcgatcg
     2041 gctcatctcg ctcttcacgc tcgacgccgg cggacgccga ccgtccttgg gacccgaagg
     2101 ccccggcgag gatccgctct tcttcgagta cttccatggc gacaccgggg ccggactggg
     2161 cgcgagccac cagaccggct ggacggcgct cgtcgcgaag ctcctggagg caaggggacg
     2221 acatcgggcg gcgaaggcgt gaccggggcc tcggccgggc gcccgttcgt cgagctcggt
     2281 cccgatgtct gcggcgacct ggagacgagc atccgggacg agtggctggt caccaacggg
     2341 ctgggcggtt acgccttcgg cacggtcgcc gggccgccga cccgcgtcta tcacgggctc
     2401 ctggtcgcgg cgctggcgcc gcccgtgggc cggacggtgc tcgtcggcgg cctgctcgaa
     2461 tgggccgtgg tcgatggcga gcgggtcgcg ctccatgcgc tcgaacacgc cgacggccgg
     2521 atcgtcggcg acggctaccg gcggctggtc tcggtccggc tcgacggaat gcggccggtg
     2581 ttcacctacg cgatcggcga cgtccggatc gagaagcgga tctggatggc cgaggccgcc
     2641 aacacgacct acgtccgcta cgacagcgtc ggggaggacc ggcccatcga gctcgagctg
     2701 acaccgctca cgacgtttcg cgaccaccac gagacccgcc gcgaggccga cggcattcct
     2761 ggcggcccgc tgcgggtcct cgccccggac gggtcgtttg cgccgctcgg ctcgcagccg
     2821 catggtcggt gggtccgcga catccgccat cgccaggaga cggcgcgcgg gctccccgat
     2881 cgatcggacc tgtgggcgcc gggcgccgcg cggttcacga tgtccgccgg ccacccggcc
     2941 accctcatcc tcacggccga gccggccgat ccgcaggacg cggggctcgc gctcgcggcg
     3001 gcggccgggc gcgagaggga cctgctcgag acggccggcg tcggcggcgc gtcggacttc
     3061 gtgcgcgacc tcgtgctcgc agccgaccag ttcctcgtcc gacgcgacat cccgctcgac
     3121 ggcgatcgaa tggagcccgg acggacggtc atcgcgggct acccctggtt caacgactgg
     3181 ggccgcgaca cgatgatctc gctgcccggg ctgtgcctgt cgaccgggcg ccacgccgag
     3241 gccgccacca tccttcgctc gttcgcccgg ttcgtccgcg acggactgct gcccaacaac
     3301 ttccccgacc atgccggcga agtccccgag taccacacga tcgatgcctc ggtctggtat
     3361 ccgctcgcgg tccgggcgca cgccgtcgcg agcggctcga gcgcgctcat cgacgagctc
     3421 ctgccgaccc tccgctcgat cctcgacgcc cacatcgcgg ggacccggtt cgggatcggg
     3481 atggatccgg ccgacgggct cctccgcggc ggggccgagg gataccagct gacgtggatg
     3541 gacgcgcggg tggacggctg ggtggtcacg ccacgacgcg gcaagcccgt cgagatccag
     3601 gcgctctgga tcaactcgct ccgggccgtc ggcggatggc tcgtcgagcg tggcgatccg
     3661 gacggcgccg gggcccgcta tctcgatctc gccgatcgtg cggccgcggc cttcgtccag
     3721 cggttctggc gacctgagct cggctacctg gccgacgtcg tggacgggcc ggacggcgac
     3781 gacgcgtcgc ttcgacccaa ccaggtgctt gccctgtcgg tcccccaccc gctcgtcgag
     3841 ggcgagatgg cggcagccgt gctggatgcg gtcggtcgcg cgctggcggt gccgctgggt
     3901 ctgcgctcgc tcgcgcccgg ggatccggcc tatcgcccgg cgttccaggg cgaccgccgg
     3961 ttccgcgacg cggcgtacca ccagggaacc gtctggacgt ggttgatcgg gccctacgcg
     4021 gaatccgtcg cccgggtccg cggggacccg gcggccgggc tggagatcct tcgcccgttc
     4081 gaggctcacc tccggacggc cggtctcggc tccgtgtccg agatcctgga gcccgagcca
     4141 ccgttcgagc cgcgcggctg cccgttccag gcctggggcg tggccgaggt cctacgggtc
     4201 tggcgagcgc tcggggggaa ctgaccggtc gcccgcgacc ggtcgtcgct tcggcgggtc
     4261 gggggtcacg agcgcgagga ggcggcgccg gaccagcatc ggccggcccc gggccagcga
     4321 gccgagccgg cgaacggcaa gggagggagc gaggcgtcgt gcccggcccc agaccgtcac
     4381 gagcgcccgg ctccccggag tccttgcatg accacagggt ggggcggcca ggttagccgc
     4441 ccgttcccgg agcgtgaaca gttcgaatcg atcagccgcg gatcagcgtc agggccccca
     4501 cccacatcgt catcagacag ccgatcgcgc ccatcgccgc caggaacagc tcgccgcctg
     4561 cccaggacgc cacggcgacc gcgccgaaca tcgccgccag gacgagcgcg atcgcggcca
     4621 ggccgatccg ctcgatcacc ggccggggct cgcgcccggc tgcctcgccc tcgcgcgtcc
     4681 ggtcctcctc attcattgcg cccccctcag gtatcgagcc atcaaccggc ccgcgatcgg
     4741 cgcggccact tccccgccgg ccgcgcccgc gtcgatcagc atcaccccca cggccagctt
     4801 cgccccttcg gccggggcga aggccgcgaa ccaggcgtcc ttgatctgga ccgggtgagg
     4861 c
//
LOCUS       DATDDI010000202         2286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_4298, whole genome shotgun sequence.
ACCESSION   DATDDI010000202 DATDDI010000000
VERSION     DATDDI010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4298"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VIU37_02865"
     CDS             <1..484
                     /locus_tag="VIU37_02865"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012912.1"
                     /translation="PGDDTTWDETLAIARLYRTALEHLGVRGYPKTTGKRGIQVWIPI
                     EPKYGFGDTSNWVERVSRAVGAIVPDLVSWEWAKGARKGRARLDYTQNQPIKTLVAPY
                     AVRPSPGAPVSAPIAWDELDDPELRPDRWTIRTIVERVAERGDLFAAAQTDTQELPAV
                     "
     gene            507..1739
                     /locus_tag="VIU37_02870"
     CDS             507..1739
                     /locus_tag="VIU37_02870"
                     /inference="COORDINATES: protein motif:HMM:NF002367.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6012913.1"
                     /translation="MPDQITLRTPTPDEFPRFVAPLSIAFNEEISDAAIENDRKTIEL
                     DRFVGAFDGDQVVGCGGAYTFRLTVPGGEVGAAGVTAVGVLPSHRRRGILRQMMTWLF
                     DQARERHEPLAILWASEAAIYQRFGYGPGTVSSAFEIAKDKIQFRRPVEAPGRFRLVD
                     VDEATERFPAVYEVVRRSTPGTVNRTDARWRWEVLYDAPWYREGAGPKLRALYEVDGE
                     IRGYVIYRTKGDWDTSGPKGVVLVQELTALDPAAEQALWAWVGGIDLIASVRARRAPL
                     PHPLQLLLTEPRRLGLTVTDGSWIRIIDLAGALEARSYASPGELVLEVADAFCPANHG
                     RWRLSAASGRATVRPAPDAEPDLTLDISDVAATYLGAFRFTDLRRAGRVRECRAGAVA
                     QADAMFRTEVAPLTSTMF"
     gene            complement(1736..>2286)
                     /locus_tag="VIU37_02875"
     CDS             complement(1736..>2286)
                     /locus_tag="VIU37_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012914.1"
                     /translation="PGPTVRLGPFDTRILGGLGDASAGLCGGMAWYVRERFEARQPIP
                     ADTQAPANSSPLFQALVRRQVLSLEWMRTPLGFWLMAARGAEDAARRTRDTELPKIRA
                     SIEGGRLAMVGLVRHLGWNPLGQTDSHQVLAYGIDTLGDMTTVRIYDPNWPDRDDVTI
                     SVGPATLSQSTSEVLYGVLSLG"
BASE COUNT          322 a          814 c          831 g          319 t
ORIGIN      
        1 cccgggcgac gacacgacgt gggacgagac gctcgcgatc gcccggctct accggaccgc
       61 gctcgagcac ctcggcgtgc ggggctatcc caagacgacc ggcaaacgcg ggatccaggt
      121 ctggatcccg atcgagccga agtacggctt cggcgacacc agcaactggg tcgagcgggt
      181 gtcgcgcgcc gtcggcgcga tcgtccccga cctcgtctcg tgggaatggg cgaagggtgc
      241 acgcaagggc cgcgcccggc tcgactacac ccagaaccag ccgatcaaga cgctcgtcgc
      301 gccgtacgcg gtccggccgt cgccgggcgc cccggtctcg gcgcccatcg cctgggacga
      361 gctcgacgac cccgagctcc ggcccgaccg ctggacgatc cggacgatcg tggagcgggt
      421 cgcggaacgc ggcgacctct tcgcggcggc acagaccgat acccaggagc tgcccgcggt
      481 ctgagcaggg atggcaccat ggcgccatgc ccgaccagat caccctccgc accccgaccc
      541 cggacgagtt cccgcgcttc gtggcgccgt tgtcgatcgc gttcaacgag gagatcagcg
      601 acgccgccat cgagaacgac cgcaagacga tcgagctcga ccggttcgtc ggtgcgttcg
      661 acggcgacca ggtcgtcggc tgcggtggcg cctacacgtt ccggctgacc gtgccgggtg
      721 gcgaggtggg cgccgcgggc gtcaccgcgg tcggcgtcct gcccagtcac cgacggcgcg
      781 ggatcctgcg ccagatgatg acctggctgt tcgaccaggc gcgcgagcgg cacgagcccc
      841 tcgccatcct gtgggcttcg gaggcggcga tctaccagcg tttcggttac ggcccgggca
      901 ccgtgtcgtc ggcgttcgag atcgcgaagg acaagatcca gttccgacgc ccggtcgagg
      961 cgcccggtcg cttccggctg gtcgacgtcg acgaggcgac cgagcggttc ccggcggtgt
     1021 acgaggtcgt tcgtcgctcg acgccgggca cggtgaaccg gaccgacgcc cgctggcgct
     1081 gggaggtgct ctacgacgcg ccgtggtacc gggagggcgc gggtcccaag ctccgggcgc
     1141 tctacgaggt cgacggcgag atccgcggct atgtcatcta ccggacgaag ggagactggg
     1201 acacgtccgg tccgaagggc gtggtgctcg tccaggagct gaccgcactg gatcccgcgg
     1261 cggagcaggc gctgtgggcg tgggtcggcg ggatcgacct gatcgccagc gtgcgtgcac
     1321 ggcgcgcgcc ccttccgcat ccgctccagc tcctgctgac cgagccccgc cggctcggcc
     1381 tgaccgtcac cgacgggagc tggatccgga tcatcgatct cgccggcgcg ctcgaggcgc
     1441 gctcgtacgc gagccctggc gagctcgtcc tggaggtggc cgacgccttc tgcccggcca
     1501 accacggccg gtggcggctg tccgctgcgt cgggtcgcgc gacggtgcgg ccggcgccgg
     1561 acgccgagcc ggacctgacc ctcgacatca gcgatgtcgc ggccacgtac ctcggcgcct
     1621 tccgattcac ggacctccgg cgcgccggcc gggttcgcga gtgccgggcg ggggcggtcg
     1681 cccaggcgga tgcgatgttc cggaccgagg tcgccccgct gacctcgacg atgttctagc
     1741 cgagcgacag gaccccgtag agcacctcgc tggtcgactg gctgagcgtc gccggcccga
     1801 cggagatcgt cacgtcgtcg cggtccggcc agttcgggtc gtagatccgg acggtcgtca
     1861 tgtcgcccag cgtgtcgatg ccgtaggcca ggacctggtg gctgtcggtc tggccgaggg
     1921 gattccagcc gaggtgtcgg acgagcccga ccatggccag ccggccgccc tcgatcgagg
     1981 cccggatctt cggcagctcg gtgtcacgcg ttcgtcgcgc agcgtcctcc gcaccgcgcg
     2041 cggccatcag ccagaacccg agcggcgtcc gcatccactc gagcgagagg acctgccgac
     2101 ggacaagcgc ctggaagagg ggcgagctgt tcgcgggtgc ctgcgtgtcg gcgggaatgg
     2161 gctggcgggc ctcgaatcgc tcgcggacgt accaggccat gccgccgcac aacccggcag
     2221 acgcgtcgcc cagcccgccc aggatgcgcg tgtcgaacgg tccgagccgg accgtgggcc
     2281 ccggcg
//
LOCUS       DATDDI010000203         2774 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_441287, whole genome shotgun sequence.
ACCESSION   DATDDI010000203 DATDDI010000000
VERSION     DATDDI010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2774
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441287"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VIU37_02880"
     CDS             <1..456
                     /locus_tag="VIU37_02880"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY6012915.1"
                     /translation="DTHGHPAGDEALRAFSRAVRSVVRASDVIARYGGEEFMVVLPGS
                     TEADTRRIAEKIRKAVEETVIEIGPGRYARTTVSAGVVATDTQHLDRKGLVAMVDAAL
                     YRAKEGGRNRVATASTAEQELAAAAGRRRGGDAVRRPIPIDSQVRPESA"
     gene            complement(481..2715)
                     /gene="purH"
                     /locus_tag="VIU37_02885"
     CDS             complement(481..2715)
                     /gene="purH"
                     /locus_tag="VIU37_02885"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF002049.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEY6012916.1"
                     /translation="MSGRIAIGVSGAGSNLRALAASADRGELGGEIILVFGDRACAAL
                     EWATEQGIDTVLVPGGDDEALAATLTAVAPDVVVLAGYMRIIGPRVLEGFVGRILNTH
                     PSLLPAFPGAHAVADALAHGVTVSGCTVHLVDATLDGGPIVSQEAVAVLPDDDVETLH
                     ARIRAVEHRLLPRAVALLLAGAIAVGPGGRRVGVDLARADGAMTVPRRALLSVSDKTG
                     LAPFAAGLVRAGFELVSTGGTARALREAGLPVTDVAAVTGFPEMLDGRVKTLHPRVHG
                     GILADRRLADHRRQLLNAAIAPFELVVVNLYPFAAAAERPGIRFDELVEEIDIGGPSM
                     VRAAAKNHANVAIVTSPARYDAVLSAIEGDGRVGDGLRAALAVEAFRHTAAYDARIAE
                     VLPERLPRELDLPDEPGLPGARDPYPASLTIALEKVDTLRYGENPHQPAARYRRPGTG
                     PGHGPFATGEPPLQGKALSYNNVLDASAVAALGRAMRGPAVVIVKHTNPCGAAERPTL
                     LEAWQAALAGDPVSAFGGVVALTRPVDAGVAEALASIFLEVVVAPAYDEAAREILARK
                     PNLRLVVDPELGRDEPAPPPDPRGSIRTAGGAVLVTAPDTAADDPATWTVATHRAPTA
                     AERDDLDLAWRLVRGVGSNAIVLVRDGRLIGMGSGQTSRVDAARGAVDKARAYAGDEA
                     LRGASCASDAFYPFPDAVEVCLEAGVTAFVQPGGSIHDADAIAAADNRGAAMLLTGIR
                     HFRH"
BASE COUNT          382 a         1037 c         1030 g          325 t
ORIGIN      
        1 gacacccatg gccacccggc cggagacgag gcgttgcgcg cgttcagccg ggccgtgcgc
       61 tcggtcgtgc gcgcctcgga cgtcatcgcc cggtatggcg gtgaggagtt catggtcgtc
      121 ctgcccggct caaccgaggc cgacacgcga cgcatcgccg agaagatccg aaaggccgtc
      181 gaggagacgg tcatcgagat cggcccgggc cgctacgccc ggacgacagt ctcggccggc
      241 gtcgtcgcca ctgataccca gcacctcgat cgcaagggcc tggtggcgat ggtggatgct
      301 gccctctatc gagcgaagga gggcgggcgc aaccgcgtgg ccacggcctc cacggccgaa
      361 caggagctgg ccgccgccgc gggccgccgc cgcggtgggg acgccgtgcg ccgcccgatc
      421 ccgatcgaca gccaggtccg gcccgaatcc gcctgaggga cgcgctctac gggcgagccc
      481 tcagtggcga aagtggcgga tccccgtcag gagcatggcc gcgccccggt tgtcggcggc
      541 ggcgatggca tccgcgtcgt ggatggagcc gcccggctgg acgaaggcgg tcacgccggc
      601 ttccaggcag acctcgaccg cgtcggggaa cggatagaac gcgtccgacg cacacgaggc
      661 gccgcgcaac gcctcgtcgc ccgcatacgc tcgggccttg tcgaccgcgc cgcgcgccgc
      721 atcgacccgg gaggtctgtc cggagcccat cccgatcagc cgcccatccc tgaccagcac
      781 gatcgcgttc gagcccaccc cgcggacgag ccgccaggcg agatcgaggt catcccgttc
      841 ggcggccgtg ggcgcgcgat gcgtggccac ggtccatgtc gccgggtcgt cggccgcggt
      901 gtcgggtgcc gtcacgagca cggcgccgcc ggccgtccgg atcgagccgc gcgggtcggg
      961 cggcggcgcg ggctcgtcgc gacccagctc gggatccacg accagtcgca ggtttggctt
     1021 gcgcgccagg atctcgcggg cagcctcgtc gtaggccggc gcgacgacga cctcgaggaa
     1081 gatcgaggcg agcgcctccg ccacgcccgc gtcgaccggc cgggtgagcg cgaccacccc
     1141 gccgaacgcc gagaccgggt cgccggccag cgcggcctgc cacgcctcga ggagcgtcgg
     1201 gcgttccgcc gccccgcacg ggttggtgtg cttcacgatc accacggccg gaccgcgcat
     1261 ggcgcgcccg agggcagcca cggccgacgc atccagcacg ttgttgtacg acagggcctt
     1321 gccctggagc ggcggctcgc cggtcgcgaa cgggccgtgg cccgggccgg tccccgggcg
     1381 ccggtagcgg gccgccggct ggtgcgggtt ctccccgtac cggagcgtgt cgaccttctc
     1441 gagggcgatc gtcaggctcg ccgggtacgg atctctcgcg ccgggcaggc ccggttcgtc
     1501 gggcaggtcc agctcgcgcg gcagtcgctc cggcagcacc tcggcgatcc gcgcgtcgta
     1561 cgcggcggtg tggcggaagg cctcgacggc cagcgccgcc cgcagcccgt caccgacccg
     1621 gccgtcgccc tcgatcgcgg acagcaccgc gtcatagcgc gcgggcgagg tcacgatcgc
     1681 cacgttggcg tggttcttgg ccgcggcccg gaccatcgac ggcccgccga tgtcgatctc
     1741 ctcgacgagc tcgtcgaacc ggatcccggg tcgctcggcg gcggcggcga acgggtagag
     1801 gttgacgacg accagctcga acggggcgat cgcggcgttc agcagctgac ggcgatggtc
     1861 ggcgaggcgg cgatcggcca ggatcccgcc gtgcacccgc gggtggagcg tcttgacccg
     1921 gccgtcgagc atctcgggga acccggtcac ggcggccacg tcggtcaccg gcaggccggc
     1981 ctcacgcagg gcccgggccg tgccgcccgt cgacacgagc tcgaacccgg cccggacgag
     2041 cccggcggcg aacggcgcga ggcccgtctt gtcggagacc gacagcaacg cacgacgcgg
     2101 caccgtcatc gccccatcgg cgcgggcgag atcgacaccg acgcggcggc cgcccggccc
     2161 gaccgcgatc gcgccggcca gcagcagggc cacggcgcgc ggcaggagac gatgctccac
     2221 ggcccggatc cgggcatgga gcgtctcgac gtcgtcgtcc ggcagcaccg ccacggcctc
     2281 ctgcgacacg atcggtccgc cgtcgagggt cgcgtcaacg aggtggacgg tgcagccgct
     2341 cacggtcacg ccgtgggcca gcgcgtcggc caccgcgtgg gcgccgggaa acgcggggag
     2401 cagcgaggga tgggtgttga ggatccggcc gacgaacccc tcgagcaccc tcgggccgat
     2461 gatccgcatg tacccggcga ggacgacgac gtcgggcgcg acggccgtca gggtggcggc
     2521 gagcgcctca tcgtcgccac cggggacgag cacggtgtcg atcccctgct ccgtcgccca
     2581 ctcgagcgcg gcgcaggcac ggtcgccgaa gacgaggatg atctcgccgc cgagctcgcc
     2641 ccgatccgcg gacgccgcga gcgcgcggag gttcgacccg gcgcccgaga ccccgatcgc
     2701 gatccggccg ctcatgccga tccctcgagc ggcgcctcga cgtagcgcgc gccgccgagc
     2761 cgatccgcct cgac
//
LOCUS       DATDDI010000204         1555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_628720, whole genome shotgun sequence.
ACCESSION   DATDDI010000204 DATDDI010000000
VERSION     DATDDI010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_628720"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VIU37_02890"
     CDS             <1..423
                     /locus_tag="VIU37_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012917.1"
                     /translation="GCVIDGTVVNSVLSPGVRVDVGAVVRDSIVMFDSVIRAGAVIDR
                     AILDKEVVVGQGAIIGEGPYDGAPNRQEPARLNTGITVIGKQAIIPRGARLGRNVKIG
                     GGVRTSDFKTKIVRTGGSVDPQPVGGRATREEAAASAV"
     gene            473..1024
                     /locus_tag="VIU37_02895"
     CDS             473..1024
                     /locus_tag="VIU37_02895"
                     /inference="COORDINATES: protein motif:HMM:NF022182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HEY6012918.1"
                     /translation="MPGNSKRAGARRAGSSAISLATVEGWLRELGLEPLATVERDGIT
                     AWDVALDGRRRRDLRATLILDPAIGVIVWAHLAPPLGDGLRKAYRSLLRWNDEFPLAK
                     FSVADDGRPILAVEIPNRWLGVDELGLALARVALIADAIFDETRGWLWIGGRVPDGYE
                     ARPVRNEVLLERFAGELGELIGG"
     gene            1021..>1555
                     /locus_tag="VIU37_02900"
     CDS             1021..>1555
                     /locus_tag="VIU37_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012919.1"
                     /translation="MTPLRRGVARAAGLALGLALGVAPGLGLAPGVGPALVAAATPSL
                     TITGDATYDVLPDERRVAVTVHLVATNHLRNTVSRKVYFRTAFLTVQPGTSGFALRGG
                     SGNPKVSVHESTDTFTSLKLDLGANLAAGKSTQLTLTFDIRDTGGDPARLVRVSPSLV
                     TFGAWAFATPGTPGSTVL"
BASE COUNT          210 a          549 c          575 g          221 t
ORIGIN      
        1 ggctgcgtga tcgacgggac ggtcgtcaac agcgtgctgt cgccgggagt tcgcgtcgac
       61 gtcggggctg tcgtccggga ctcgatcgtg atgttcgact cggtgatccg ggccggcgcc
      121 gtgatcgatc gagcgatcct cgacaaggag gtcgtcgtcg ggcagggcgc gatcatcggc
      181 gagggtccct acgacggcgc cccgaaccgg caggagccgg ccaggctcaa caccgggatc
      241 accgtgatcg gcaagcaggc gatcatcccg cgcggcgccc gactggggcg caacgtcaag
      301 atcggcggcg gcgtccggac cagcgacttc aagaccaaga tcgtgcgcac cggcgggtcg
      361 gtggacccgc agccggtcgg cggacgggcg acacgcgagg aggccgctgc ctcggcggtc
      421 tgatccgccg gatgcccgat cgatcggggg gcgcggctag acttcgcggg ccatgcccgg
      481 gaattcgaag cgtgccgggg cgcgacgcgc cggcagctca gccatcagcc tcgcgacggt
      541 cgagggctgg cttcgcgagc ttggcctgga gccgctggca accgtggagc gcgacgggat
      601 caccgcctgg gatgtggccc tcgacggtcg ccggcgccgt gacctccggg cgacgctgat
      661 cctcgacccg gccatcggcg tcatcgtctg ggcgcacctc gcgccgccgc tcggcgacgg
      721 gctgcgcaag gcgtatcggt ccctgctgcg ctggaacgac gagtttccgc tggcgaagtt
      781 ctcggtagcc gacgacgggc ggccgatcct cgccgtcgag atcccgaatc gctggctggg
      841 cgtggatgag ctgggtctcg cgctggcgcg cgtcgcgctc atcgccgacg cgatcttcga
      901 cgagacccga ggctggctgt ggatcggcgg ccgcgtgccg gacggctacg aggcgcgccc
      961 ggtccgcaac gaggtcctgc tcgagcgctt cgcgggcgag ctcggggagc tgatcggcgg
     1021 atgacgccgc tccggcgggg cgtcgcccgg gcggccggtc tcgcgctcgg cctggcactg
     1081 ggcgtggcgc cggggctggg cctcgcaccg ggcgtcggtc ccgcgctcgt cgccgcggcg
     1141 accccgagcc tcacgatcac cggcgacgcg acgtacgacg tcctgcccga tgagcgccgg
     1201 gtcgcggtca cggtccacct cgtggccacg aaccatctcc ggaacacggt cagccgcaag
     1261 gtctacttcc gcacggcatt cctgaccgtt caacccggca cgtcaggctt cgcgctcagg
     1321 ggcgggagcg ggaacccgaa ggtgtcggtc cacgagagca ccgacacgtt caccagcctc
     1381 aagctcgacc tgggggcgaa cctcgcggcc gggaagtcga cgcagctgac cctgaccttc
     1441 gacatccgcg acaccggcgg cgacccggct cgactggtcc gcgtctcgcc gtcgctggtc
     1501 acgttcggcg catgggcctt cgcgacgccc ggcactcccg gctcgaccgt gctcg
//
LOCUS       DATDDI010000205         2391 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_316401, whole genome shotgun sequence.
ACCESSION   DATDDI010000205 DATDDI010000000
VERSION     DATDDI010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316401"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..606)
                     /locus_tag="VIU37_02905"
     CDS             complement(79..606)
                     /locus_tag="VIU37_02905"
                     /inference="COORDINATES: protein motif:HMM:NF015596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012920.1"
                     /translation="MFPRRLLITAIAAVAVAACSASGGSPATGPASSVQPASSAGAAS
                     PTVGTASSSTFGTILTGPGGMTLYTYSGDSAGTSTCTGGCATTWPPLTVPSGQQPVAG
                     AGVTGALSTLARADGTTQVAYDGRPLYTWQGDAKPGDVTGDGVSGFSVAKAASAAAPA
                     PGSAAPPASGGRYGY"
     gene            707..1324
                     /locus_tag="VIU37_02910"
     CDS             707..1324
                     /locus_tag="VIU37_02910"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY6012921.1"
                     /translation="MPVSPSQSWVQPVVLEGARIRLEPLRRDHLADLARVAFDPAVWR
                     WTIARPQDESGLAQWVEAAVANAEAGTERPFATVDRATGRAIGSTRFMSIVPEHRRLE
                     IGWTWVGTDHQRTGANREAKLLQLGHAFEVLGANRVEFKTHARNERSRAALAGIGATF
                     EGVFRSHMIMPDGTLRDSAWFSVIADEWPSVKAGLVASLARYPSP"
     gene            1366..1767
                     /locus_tag="VIU37_02915"
     CDS             1366..1767
                     /locus_tag="VIU37_02915"
                     /inference="COORDINATES: protein motif:HMM:NF015953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEY6012922.1"
                     /translation="MRSFVVNTVVTAVAFYVLTKLLPDAGVGTGVTYAGELTGLLVLA
                     VIFGLVNGLIGPVVRILAFPLNLMTMGLIGFVINGGLLLATAFVANSTGFDLQVGDFP
                     PDVTGNTIVAAILGSIVLSVVGTVVRLVVHD"
     gene            1751..>2391
                     /locus_tag="VIU37_02920"
     CDS             1751..>2391
                     /locus_tag="VIU37_02920"
                     /inference="COORDINATES: protein motif:HMM:NF014803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012923.1"
                     /translation="MSSTTDSEALRRAANRFGTPLYVTDLAQLAAAAAEVRAAFPDPW
                     LRHYSVKANDVPAIVAAVAGHGFGANVVSRGEWAAATRAGLPNDRITLEGIGKTEADL
                     RAAAVVVRDGRPLRWVALESPEEAAALAAAVRAEAGPSGSLDVLYRLNPDVAPETLPG
                     LAVGTGGSKFGMTETELAAAIEAGGGPDGPLRPRGIHLHVGSQLGAIDAWRDAV"
BASE COUNT          302 a          873 c          876 g          340 t
ORIGIN      
        1 gcctcagcgc gggcgcccga tcgccgcccg ctacgaggag cggaccaagc cgctcgtcac
       61 cagcgctggt gggctggctc agtagccgta ccggcccccg gacgccggcg gcgcggcgga
      121 ccccggcgca ggtgccgccg cggacgccgc cttggcgacc gagaagccac tgaccccgtc
      181 cccggtgacg tcgccgggct tggcgtcgcc ctgccaggtg tacagcggcc gcccgtcata
      241 ggcgacctgg gtcgtcccgt cggcccgggc cagggtggac agcgccccgg tcacgcccgc
      301 gccggcgacc ggctgctggc ccgacgggac cgtcagcggc ggccaggtcg tcgcgcagcc
      361 accggtgcag gtcgacgtgc ccgccgagtc gcccgagtac gtgtagagcg tcatcccgcc
      421 gggaccggtc aggatcgtcc cgaaggtcga ggagctcgcc gtgccgactg tcgggctcgc
      481 ggcacccgcg gagcttgccg gctggacgga cgacgccgga ccggtggcgg gcgacccgcc
      541 cgaggcggaa caggcggcga ccgccacggc ggcgatggcg gtgatcagca ggcggcgggg
      601 gaacatgctt ggcgctccgg gtctcgtggt gtgacggtgg gtcgattgac cgttcgtacg
      661 ccgccaccgc gcttccggtt tccggacggg ccgctaccat gccccgatgc cggtctcgcc
      721 gtcccagagc tgggtccagc ccgtcgtcct cgagggagct cgcatccgcc tcgagccgct
      781 tcgccgcgac cacctcgccg acctggcccg cgtggcgttc gacccggccg tctggcgctg
      841 gacgatcgcg cggccacagg acgagagcgg cctggcgcag tgggtcgaag ccgccgtggc
      901 caacgcggag gccgggaccg agcgaccgtt cgcgacggtc gaccgtgcga cgggccgggc
      961 gatcggcagc acccgcttca tgtcgatcgt gcccgagcac cggcgactgg agatcggctg
     1021 gacatgggtc gggaccgacc atcagcggac cggcgccaac cgcgaagcca agctcctcca
     1081 gctcgggcac gcgttcgagg tcctcggggc gaaccgcgtg gagttcaaga cccatgcccg
     1141 gaacgagcgc tcgcgcgcgg ccctggccgg gatcggcgcg acgttcgagg gcgtcttccg
     1201 aagccacatg atcatgcccg acgggaccct ccgcgattcc gcctggttca gcgtgatcgc
     1261 cgacgagtgg ccgagcgtga aagccggtct cgtggccagc ctggcgcggt acccttcgcc
     1321 ctgacggtcg tcgggggccg tgtcctgtcg agcggaggga tcgccgtgag aagcttcgtc
     1381 gtcaatacgg tcgtcacggc cgtcgcgttc tacgtgctga ccaagctcct gcccgatgcc
     1441 ggcgtcggca cgggcgtgac gtacgccggc gagctcaccg ggctgctcgt cctggccgtg
     1501 atcttcggcc tcgtcaacgg gttgatcggt ccggtcgtcc ggatcctcgc cttccccctc
     1561 aacctgatga ccatggggct gatcgggttc gtgatcaatg gcggcctgct gctggcgacc
     1621 gcgttcgtcg ccaattccac ggggttcgac ctccaggtcg gcgacttccc gcccgacgtc
     1681 accggcaaca ccatcgtcgc ggcgatcctc ggctcgatcg tgctgagcgt ggtcggcacc
     1741 gtcgtgcggc ttgtcgtcca cgactgactc cgaggcgctc cggcgagccg caaaccggtt
     1801 cgggacgccg ctttacgtca ccgacctggc acagctggcc gcggccgcgg ccgaggttcg
     1861 cgcggcattc cccgatccgt ggctccgcca ctactcggtc aaggccaacg acgtcccggc
     1921 gatcgtcgcc gcggtcgcgg ggcatgggtt cggtgcgaac gtcgtgtcgc gcggggagtg
     1981 ggcggccgcc acgcgggccg gcctgccgaa cgaccggatc acgctcgagg ggatcggcaa
     2041 gaccgaggcc gacctgcgcg ccgcggcggt ggtcgtccgc gacggtcgcc cgctgcgctg
     2101 ggtggcgctg gaatcgcccg aggaggccgc cgcgctggcg gcggccgtcc gcgccgaggc
     2161 cggtccgtcg ggctcgctgg acgtcctgta ccggctcaat ccggacgtcg cgcccgagac
     2221 gctgcccggt ctcgccgtcg gcaccggagg atccaagttc ggcatgaccg agaccgagct
     2281 cgcggccgcc atcgaggctg gcggcgggcc ggacggtcca ctgcgcccgc gcgggatcca
     2341 cctgcacgtc ggctcgcagc tcggtgcgat cgacgcctgg cgcgacgcgg t
//
LOCUS       DATDDI010000206         2292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_233224, whole genome shotgun sequence.
ACCESSION   DATDDI010000206 DATDDI010000000
VERSION     DATDDI010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233224"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1319
                     /locus_tag="VIU37_02925"
     CDS             <1..1319
                     /locus_tag="VIU37_02925"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEY6012924.1"
                     /translation="LDEARITDLTQGHPPVFEPGLTEALADGLATGSLAFTTRLDPPA
                     DAPFTFVCVSTPTDADGPLSTVNVEAAVGRLLANAGTDHVIVVRSTLPLDGPGRLAAV
                     AAAAGRADRPSIVTNPEFMREGQALEDFDRPNRVVTGWLEPRDQPAAQAVLDLYAPLG
                     ASSMVADARSVALIKLGSNVFLGTKISFANEMARVADATGADIEAVIAGIGLDPRIGT
                     AFLKPGPGIGGSCLPEQAIAIALQTAALDVEAPLVSSVHRSNAVHQREIVRRLETLLG
                     GPGSLAGRRIAQLGLAFKADTDDVRESPALALAANLRAAGADVLTHDPRAERRARLAD
                     PTLVVAPTAMEALRDAEAVVVVTEWAEYGAIDWAAAAPTMRGTLVYDTRGIVDVEAAQ
                     RAGLRVERLGRPATGQPGPGVPAAVVPAAAASAAAASAAAASASDA"
     gene            complement(1223..>2292)
                     /locus_tag="VIU37_02930"
     CDS             complement(1223..>2292)
                     /locus_tag="VIU37_02930"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6012925.1"
                     /translation="HDSTLDWLIRWRWGVLGWARSAGLAAPVADVYHGHDLTGLPAAV
                     RAQAAKGGVVVYDSHESFMDSGSNVNRPAWAKWLMRRFERRQARHAVALVTVNRSLGE
                     LLGSRFGLERVVVVYNTPARWELPAEAPDLLRRATELPPGTPIALYHGAFSPHRGLEE
                     LAEAILLPGMEAVHAVFLGYGSLEADLRELAAEHRFGGRVHVLKAVSPDVLPVWVASA
                     DVGVMAIQASTLNHRLSSPNKLFESIATGLPVVVSDFLEMRRIVLDDPDGPLGAVCDP
                     ADPASIAAAIRSILDRSPSAMADLRARCLRAAHDRWNWETESAKLVALYASLADAAAA
                     DAAAADAAAAGTTAAGTPGPG"
BASE COUNT          316 a          888 c          803 g          285 t
ORIGIN      
        1 accttgacga ggcccgcatc acggacctca cccagggcca cccgcccgtc ttcgagcccg
       61 gcctgaccga ggcgctggcg gacgggctcg ccaccggctc gctcgccttc acgacccggc
      121 tcgacccgcc ggcggacgcc ccgttcacgt tcgtctgcgt gagcaccccg accgacgcgg
      181 acggtccgct gtcgacggtc aacgtcgagg cggcggtcgg ccgcctcctg gccaacgccg
      241 gcaccgatca cgtgatcgta gtccgctcga cgctgccgct ggacggcccg ggtcgcctcg
      301 ccgccgtggc cgcggcggcc ggccgggccg accgcccgtc gatcgtcacc aaccccgagt
      361 tcatgcgcga gggccaggcg ctcgaggact tcgaccgccc gaaccgcgtg gtcaccggct
      421 ggctcgagcc ccgcgatcag cccgccgcgc aggcggtcct cgacctgtac gcgccgctcg
      481 gtgcctcgtc gatggtcgcc gacgcgcgct cggtggcgct gatcaagctc ggctcgaacg
      541 tgttcctcgg caccaagatt tcgttcgcca acgagatggc ccgggtcgcc gacgccaccg
      601 gagccgacat cgaggcggtc atcgcgggga tcggcctgga tccgcggatc ggaaccgcgt
      661 tcctcaagcc tggccccggc atcggcggct catgcctgcc cgagcaggcg atcgccatcg
      721 ccctccagac cgcggcactg gacgtcgagg cgccgctcgt gtcgtcggtc catcgctcga
      781 acgcggtcca ccagcgcgag atcgtgcgac gcctcgagac cctgcttggc gggccggggt
      841 cgctcgcggg ccgtcgcatc gcccagctcg ggctcgcgtt caaggccgac acggacgacg
      901 tccgcgagtc gcctgccctc gcgctcgccg ccaacctgcg ggccgccggc gccgacgtgc
      961 tcacccacga cccgcgcgcc gagcggcgtg cccgtctggc cgatccgacg ctcgtcgtcg
     1021 cacccacggc gatggaggcg ctccgcgacg cggaggccgt cgtggtcgtc accgagtggg
     1081 ccgagtacgg ggcgatcgat tgggccgcag ccgcgccaac gatgcgcggg acgctcgtct
     1141 acgacacccg cggcatcgtc gacgtcgagg ccgcccagcg agccgggctc cgcgtcgagc
     1201 ggctcggccg gcccgccacc ggtcagccgg ggccgggcgt cccggcagca gtcgtcccgg
     1261 cggcagccgc atcggccgca gccgcatcgg ccgcagccgc atcggccagc gacgcgtaga
     1321 gcgccaccag cttcgccgac tcggtctccc agttccagcg gtcatgcgcc gcgcgcaggc
     1381 agcgcgcccg caggtcggcc atcgccgacg gtgagcggtc gaggatcgag cggatcgccg
     1441 cggcgatcga ggccggatcg gccggatcgc agaccgcgcc gagcggcccg tccgggtcgt
     1501 cgagcacgat ccgtcgcatc tcgaggaagt cgctgaccac caccggcagc ccggtcgcga
     1561 tcgactcgaa cagcttgttc gggctcgaca gccgatggtt cagggtgctc gcctggatcg
     1621 ccatgacgcc gacgtcggcc gaggcgaccc ataccgggag gacgtcgggg gagacggcct
     1681 tgagcacgtg cacgcgcccg ccgaaccgat gctcggccgc cagctcgcga agatcggcct
     1741 cgagcgaccc gtagccgagg aagacggcat gcaccgcctc catcccgggc aacaggatcg
     1801 cctcggccag ctcctcgagc ccgcgatgcg gcgagaacgc cccgtgatag agcgcgatcg
     1861 gcgtgcccgg cgggagctcg gtcgcgcgac ggagcaggtc gggcgcctcg gccggcagct
     1921 cccagcgggc cggggtgttg tagacgacca cgacccgctc gagcccgaac cgcgaaccga
     1981 gcagctcccc gagcgatcga ttgacggtca ccagcgcgac cgcgtgccgc gcctggcgcc
     2041 gctcgaagcg gcgcatcagc cacttggccc aggccggccg gttgacgttc gagccggagt
     2101 ccatgaacga ctcgtggctg tcgtagacga ccacgcctcc cttggccgcc tgggcccgga
     2161 ccgccgcggg cagtccggtc aggtcgtggc cgtggtagac gtcggcgacg ggggcggcca
     2221 ggccggccga ccgcgcccag ccgagcacgc cccatcgcca gcggatcagc cagtccaacg
     2281 tcgagtcgtg ct
//
LOCUS       DATDDI010000207         1780 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_566138, whole genome shotgun sequence.
ACCESSION   DATDDI010000207 DATDDI010000000
VERSION     DATDDI010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566138"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VIU37_02935"
     CDS             complement(<1..425)
                     /locus_tag="VIU37_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012926.1"
                     /translation="MTALRRLWTRDTNPDGLTACTALDVGTEFAKALVFDIEDGKGVV
                     RGVGRKRQGLAHMQSGTVADISAVVDNCAVALQEAEEMAGFRPEQVIIGIAGELVKGF
                     TTVHDQQRVKADLPITESELGKLIEGVQRQAMREAERSVT"
     gene            complement(422..994)
                     /locus_tag="VIU37_02940"
     CDS             complement(422..994)
                     /locus_tag="VIU37_02940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012927.1"
                     /translation="MTIAALAGPSALVAAVATVLGAIFLGLFFWKGGLWGLLNDLASI
                     VLMLATIPVALFLGDAAGTDWPGIGAPVVTGIGIVGMLGASVAQGLLVLRVRTYRQLL
                     PWTLGFGAVVGAWYVLVGVLGLQAGFPGALMALAIASGAGFIAIGYGFWRGNERHPLS
                     IVGGVVLLFASTAFLVWVGFAAIAVDGLSR"
     gene            complement(991..>1780)
                     /locus_tag="VIU37_02945"
     CDS             complement(991..>1780)
                     /locus_tag="VIU37_02945"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HEY6012928.1"
                     /translation="IVREDRPVTVEHLPMAAAIERGADAFFDEKYGETVRTVRVQDYS
                     FELCGGTHCRASGQIGSFVITGERSIGAGVRRIEALTGEGADVHLRARLSLLDRAAET
                     VGATSIDALPDRIAALQGELKEARRKLREGGGASGLPKPGDLRDRVESYDGVSIVTLA
                     APFESGDAMKGYARDLRSALGTNVVALALDGDEPQVFVTADETAVAKGISAGDLVKVA
                     VAAIDGKGGGRPEMAQGRGTKRDGVPDAIEAIRAGAREAVTKRG"
BASE COUNT          262 a          676 c          608 g          234 t
ORIGIN      
        1 gttacggacc gctccgcctc gcgcatcgcc tgccgctgga cgccctcgat cagcttgccg
       61 agctcgctct cggtgatcgg caggtcggcc ttgacgcgct gctggtcgtg gaccgtggtg
      121 aagcccttca cgagctcccc cgcgatgccg atgatgacct gctccggccg gaagccggcc
      181 atctcctcgg cctcctggag cgcgacggcg cagttgtcga ccacggccga gatgtcggcc
      241 accgtgcccg actgcatgtg cgcgaggccc tggcgcttgc gcccgacgcc gcgcacgacg
      301 cccttgccgt cctcgatgtc gaacacgagg gccttcgcga attccgtccc gacgtcgagc
      361 gcggtgcacg ccgtgagccc gtccgggttc gtgtcgcggg tccagaggcg gcgcagcgcg
      421 gtcatcgcga caggccgtcg acggcgatgg cggcgaagcc gacccagacg aggaaggcgg
      481 tcgatgcgaa caggagcacg acgccgccca cgatcgacaa cggatggcgc tcgttccccc
      541 gccagaaccc gtagccgatc gcgatgaacc cggcacccga cgcgatggcg agcgccatga
      601 gggcgccggg gaacccggcc tgcaacccga gcacgcccac gagcacgtac caggcgccga
      661 ccaccgcccc gaacccgagc gtccacggca gcagctgccg gtaggtccgg acgcggagga
      721 cgaggaggcc ctgggcgacg ctcgcgccga gcatcccgac gatcccgatg ccggtgacga
      781 ccggtgcccc gatccccggc cagtccgtcc cggccgcgtc gccgaggaac agcgcgaccg
      841 ggatcgtcgc cagcatcaac acgatcgagg cgaggtcgtt gaggaggccc cagagaccgc
      901 ccttccagaa gaacagtccg aggaagatcg ccccgagcac cgtcgccacg gcggcgacca
      961 gcgccgatgg tccggccagc gccgcgatcg tcatccgcgc ttggtgacag cctcgcgggc
     1021 gccggcgcgg atcgcttcga tcgcgtcggg gacaccgtcc cgcttcgtgc cacggccctg
     1081 ggccatctcc gggcggccgc cgcccttgcc gtcgatcgcg gcaacggcga ccttgaccag
     1141 gtcgccggcg gagatgccct tggcgacggc cgtctcgtcg gcggtcacga agacctgcgg
     1201 ctcgtcgccg tcgagggcga gcgcgacgac gttggtcccg agcgccgaac gcaggtccct
     1261 cgcgtagccc ttcatcgcgt cacccgactc gaacggggcc gccagcgtga cgatcgacac
     1321 gccgtcgtac gactcgaccc gatcacggag atcgcccggc ttcgggaggc cggaggcgcc
     1381 gccgccctcg cgcagcttcc gacgggcctc cttcagctcg ccctggagcg cggcgattcg
     1441 atccgggagg gcgtcgatgg atgtcgcgcc gacggtctcc gccgcacggt cgaggaggct
     1501 caggcgcgcc cgcaggtgga cgtcggcacc ctcgccggtg agcgcctcaa tccgccggac
     1561 gcccgcgccg atgctccgct cgccggtgat cacgaagctg ccgatctggc ccgacgcgcg
     1621 gcagtgcgtg ccgccgcaca gctcgaagct gtagtcctgg acgcggacgg tccggaccgt
     1681 ctcgccgtac ttctcgtcga agaacgcatc ggctccccgc tcgatcgccg cggccatcgg
     1741 caggtgttcg accgtcaccg gccggtcctc gcgcacgatc
//
LOCUS       DATDDI010000208         2076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_649367, whole genome shotgun sequence.
ACCESSION   DATDDI010000208 DATDDI010000000
VERSION     DATDDI010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649367"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1273)
                     /locus_tag="VIU37_02950"
     CDS             complement(<1..1273)
                     /locus_tag="VIU37_02950"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY6012929.1"
                     /translation="MAELNRPFPPGAYPVVVVGSGPGALQVSYSLGRLGVEHAVISAD
                     PAAGGMFRRWPFFQRLLSWTKPHAPVERGTRAYERYDWNSLLGETPETRAIQPELMDG
                     SSYFPSRPEMEANLVAFAERARVAIRYDCRWTATRLEEDAAGRRFVVETTDGEYACAA
                     LVVAVGVAEPRTPPGLGMELTSHYADVRPAETYAGKRVFIIGKQNSGFELATGLLPWA
                     RQLILSSPSPARLSVDTRSLVGIRARYVQPYEDHVLGGGVSVLDAAIDRIERAPDGTF
                     VVRLRRTDGGADMAVEADEVIAATGFVAPLVDLPALGVTTFGASALPAQTPWWESASL
                     PGVFFAGTIGQGAKGLQKHGIPANSGAVHGARYNARVLAGYLARTRFGVEPERPRVAP
                     DDVTTFLARELAEGPDLFHQRGYLARVLTADP"
     gene            complement(1261..1683)
                     /locus_tag="VIU37_02955"
     CDS             complement(1261..1683)
                     /locus_tag="VIU37_02955"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY6012930.1"
                     /translation="MVAREELVDAIAGFALFADLTDPQLTAIVHIFEEAFYAEGERVL
                     RQGLTGSGFHIILDGEAAVVVDGHERAKLARGDYFGEVSVILGESPIADIVATRPLRC
                     LVLPGPRVEAFLIAHPRVMYRMLQVQSRRLRAANRWRS"
     gene            1799..>2076
                     /locus_tag="VIU37_02960"
     CDS             1799..>2076
                     /locus_tag="VIU37_02960"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY6012931.1"
                     /translation="MTLTHQEIADQLAQTRLFAGVDAAGRGRIAERMTEVDLPADRVI
                     ARQGEIGTGFFIIVSGRVRVIRDGDTIAELGPGTFFGELSVIDREPRVA"
BASE COUNT          310 a          772 c          718 g          276 t
ORIGIN      
        1 cgggatcggc ggtcaggacc cgggccaggt agccgcgctg gtggaagaga tccggaccct
       61 cggccagctc gcgggcgagg aaggtcgtca cgtcgtcggg tgccacgcgc ggccgctccg
      121 gctcgacccc gaaccgcgtc ctcgccaggt agccggcgag caccctggcg ttgtagcgcg
      181 ctccgtgcac ggccccggaa ttcgccggga tgccgtgctt ctggagaccc ttggcgccct
      241 ggccgatggt cccggcgaag aacacgccgg gcaggctcgc gctctcccac cacggcgtct
      301 gggccggcag cgcactcgct ccgaacgtcg tgaccccgag cgccggcaga tccaccagcg
      361 gagccacgaa gccggttgcg gcgatcacct cgtcggcctc gaccgccatg tccgcgccgc
      421 catcggtccg tcgcagcctg acgacgaacg tgccgtccgg ggcccgctcg atgcggtcga
      481 tcgccgcgtc gagcacgctg acgccgccac cgagcacgtg gtcctcgtac ggctggacgt
      541 agcgggcgcg gatccccacg agcgagcgcg tgtcgaccga cagccgggcc ggcgatggcg
      601 acgacaggat gagctggcgg gcccagggca ggaggccggt cgccagctcg aacccggagt
      661 tctgcttgcc gatgatgaac acgcgcttgc cggcatacgt ctccgccggc cggacgtcgg
      721 cgtagtgcga cgtgagctcc atgccgaggc cgggcggcgt cctcggctcg gccaccccga
      781 ccgcgacgac cagcgccgca cacgcgtatt cgccatcggt cgtctcgacc acgaaccggc
      841 ggccggcggc gtcctcctcg agccgcgtgg ccgtccaccg gcagtcgtac cggatcgcga
      901 ccctcgcccg ctcggcgaag gcgaccaggt tcgcctccat ctcgggccgc gacgggaagt
      961 acgagctgcc gtccatcagc tcgggctgga tcgcccgcgt ctccggcgtc tcgccgagca
     1021 ggctgttcca gtcgtaccgc tcgtaggctc gcgtgccccg ctcgaccgga gcgtgcggct
     1081 tggtccacga caggagccgc tggaagaacg gccagcgccg gaacatgccg cccgccgcgg
     1141 gatcggccga gatgacggcg tgctcgacgc ccaggcgacc gagcgagtac gagacctgga
     1201 gggccccggg gccgctgccc accacgacca ccgggtacgc accgggcggg aacgggcgat
     1261 tcagctccgc catcggttgg ctgcccgcag gcgccgggac tggacctgga gcatccggta
     1321 catcaccctc ggatgcgcga tcaggaaggc ctcgaccctc gggccgggca ggaccaggca
     1381 gcgcaacggc cgcgtcgcca cgatgtccgc gatgggggac tcgcccagga tcaccgacac
     1441 ctcgccgaag tagtcgcccc gagccagctt cgcccgctcg tggccgtcca cgaccaccgc
     1501 ggcctcaccg tcgaggatga tgtggaaccc cgaccccgtg aggccctgcc ggaggacccg
     1561 ctcgccctcg gcgtagaagg cctcctcgaa gatgtggacg atcgcggtca gctgcggatc
     1621 cgtcaggtcg gcgaacagcg cgaagccggc gatcgcatcc accagctcct cgcgcgccac
     1681 catcggcgca tggtgccaca ccgccccgtc gcccgcctcc gattcccgcg ttcgattcgt
     1741 gttgacggcg ggttgccaca caggcagcat ggccctccaa atcgacttcg gaggccacat
     1801 gaccctgacg caccaggaga tcgccgatca gcttgcccag actcgcctgt tcgcgggcgt
     1861 cgacgccgcc gggcggggtc gcatcgccga gcggatgacc gaggtcgacc tgccggccga
     1921 ccgggtgatc gcccggcagg gagagatcgg gaccggcttc ttcatcatcg tcagcggacg
     1981 cgtccgggtc attcgcgacg gggacaccat cgcggagctg ggaccgggca ccttcttcgg
     2041 ggagctgtcg gtgatcgatc gcgagccacg cgtcgc
//
LOCUS       DATDDI010000209         1953 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_524473, whole genome shotgun sequence.
ACCESSION   DATDDI010000209 DATDDI010000000
VERSION     DATDDI010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_524473"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VIU37_02965"
     CDS             <1..425
                     /locus_tag="VIU37_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012932.1"
                     /translation="RALRESVVDDPAAAAAYGAAIASTDVRDALRAFAHSIRLRWEAG
                     HDIVSINIQAAAIDAGVRAEVEAVTAIRRRGIGRLASRLGSLDARLDVSRAEALLDAL
                     TLTELYEELVSRHGWSADDYEAWLARAFEGLVVGPGDA"
     gene            complement(481..1401)
                     /locus_tag="VIU37_02970"
     CDS             complement(481..1401)
                     /locus_tag="VIU37_02970"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEY6012933.1"
                     /translation="MTGAPTPGATPRVIGIGELVWDLLPGGQRLGGAPFNVVAHLARF
                     GWLADYVTAVGHDALGRRAIDQVGRLGVDTSLIQTSDRPTGVVRVRLDAAGVPDYEIV
                     TPAAYEAIGRLDADALEVASRAGVLVFGTLAQRFAGMRKATQQIVEAAGEGVRLYDVN
                     LRRGCWDPALLRELLGLATIVKLNDEEQATLATVLGLPDSPIEAFARALASRYSLRGV
                     CVTRGPAGAGLLLDDVYRASAAPRIDVVDTVGAGDAFAAGLARGVVDGRPVPEILDLA
                     IRLGALVASRPGAIPAWSLAELGRFDPPTV"
     gene            complement(1505..>1953)
                     /locus_tag="VIU37_02975"
     CDS             complement(1505..>1953)
                     /locus_tag="VIU37_02975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012934.1"
                     /translation="GVDVHQLNCTYYAALGCDDDRYLAARAIQLFARGVPQIYYVGLL
                     AGENDDEAIVRSGDGRAINRHDYTVGEVERALERPVVARLHELIRLRNTHPAFDGSLG
                     IRVVSGSRLQLSWVNGPWSCSLDVDVASGRVLVDEGSLQDRVADTA"
BASE COUNT          295 a          690 c          721 g          247 t
ORIGIN      
        1 tccgagcctt gcgcgagtcc gtcgtcgacg atccggctgc cgcggcagcg tacggagccg
       61 cgatcgcgtc gaccgatgtc cgcgatgccc tgcgggcgtt cgcgcactcg atccgcctcc
      121 gctgggaggc aggccacgac atcgtgagca tcaacatcca ggcggccgcc atcgacgcgg
      181 gcgtacgtgc cgaggtggag gccgtgaccg cgatccgacg gcgtgggatc ggccggctcg
      241 cgtcgcggct cgggagcctg gacgcccggc tcgacgtgtc ccgggccgag gcgctgctcg
      301 acgcgctcac cctcaccgag ctctacgagg agctcgtgtc gcgccacggc tggtcggccg
      361 acgactacga ggcgtggctg gctcgcgcgt tcgagggtct cgtggtcgga cccggcgacg
      421 cctgagcgat aaggatcgag cccgcggatc gcggggtcgc caggcgtcgc gtggcggagg
      481 tcagaccgtc gggggatcga acctgccgag ctcggccagg ctccaggcgg ggatcgcgcc
      541 cgggcgggac gcgacgagcg ccccgagccg tatggccagg tcgaggatct cgggaaccgg
      601 ccggccgtcg accacgccgc gcgccagccc ggccgcgaac gcgtcaccgg caccaaccgt
      661 gtcgacgaca tcgatgcgtg gcgcggccga cgctcggtac acgtcgtcga ggagcaaccc
      721 cgcgccggcc ggcccgcggg tcacgcacac gccacgcaat gaataccgcg aggccagggc
      781 gcgggcgaac gcttcgatcg gcgagtccgg gagtccgagc acggtggcca gggtcgcctg
      841 ctcctcgtcg ttgagcttca cgatcgtcgc cagcccgagc agctcgcgga gcagggccgg
      901 gtcccagcag ccgcggcgga ggttgacgtc gtacagccgc accccctcgc ccgccgcctc
      961 gacgatctgt tgcgtggcct tgcgcatgcc ggcgaagcgc tgcgccaggg tgccgaagac
     1021 gagcacgccg gcgcgcgacg cgacctcgag ggcgtcggcg tcgagccgcc cgatcgcctc
     1081 gtaggccgcc ggcgtgacga tctcgtagtc gggcacgcct gcggcatcga ggcgcacccg
     1141 gacgacgccg gtcgggcggt ccgaggtctg gatcagcgag gtgtcgacgc cgaggcggcc
     1201 gacctggtcg atggcgcgcc ggcccaacgc atcgtggccg acagcggtga cgtagtccgc
     1261 gagccacccg aagcgggcca ggtgcgcgac cacgttgaac ggggcgccgc cgaggcgctg
     1321 gccccctgga agcaggtccc agacgagctc gccgatgccg atcacccgcg gcgtcgcgcc
     1381 aggcgtgggc gcaccggtca cggcagcgag gttgcggcca gcccggttgg agaggagagg
     1441 ccaaccgggc tggccgcagg gatggatgca agtcgatcca cgggcaaccc gtgggagtcg
     1501 cggatcatgc ggtgtccgcg acgcgatcct ggagcgatcc ttcgtcaacc aggacgcggc
     1561 cactggcaac gtccacatcg agcgaacagg accatggacc gttcacccag gacagctgga
     1621 gacgactgcc gctgacgaca cggatgccca gcgacccatc aaaggccggg tgcgtattcc
     1681 ggagccggat cagctcgtgc agccgcgcga cgaccgggcg ctcgagcgcc cgctccacct
     1741 cgccgacggt gtagtcgtgg cggttgatcg cccgtccgtc accgctgcgg acgatcgcct
     1801 cgtcgtcgtt ctcgccggcg aggagaccga cgtagtagat ctgcggaacc ccccgggcga
     1861 acagctggat cgctcgcgcc gcgaggtacc ggtcgtcgtc gcagcccagg gcggcgtaat
     1921 aggtgcaatt cagctggtgg acgtcgaccc ccg
//
LOCUS       DATDDI010000210         1940 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_649376, whole genome shotgun sequence.
ACCESSION   DATDDI010000210 DATDDI010000000
VERSION     DATDDI010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649376"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1035
                     /locus_tag="VIU37_02980"
     CDS             <1..1035
                     /locus_tag="VIU37_02980"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY6012935.1"
                     /translation="RQRSRHLRMRALEGPWIEPWVNRPSHPYNRLLTGLGIRHAAFAP
                     MRWDGNLIGLLSVDATGAVSEADLTDSLGAIVEFGDLAAALIGRDVAARTEAGRARDL
                     IGAIIERRQFHPVFQPIVDLETDAIVGFEALTRFDDAVPPNVRFDEAEAIGLGFELEA
                     ATLEAALRAATALPRGLWLNVNTSPGFIEAGEPLRKVLRTTRRHLVLEITEHSAIADY
                     AAFHVTVADLRPRVELAVDDAGAGFASLRHILELRPDFVKVDRSIVAGLDADPARQAL
                     MVGLRHFVRATHCRLIAEGIETEAERATLRSLEISLGQGYLLGRPLPAAGQRAAAMVA
                     GGAAFGRLSP"
     gene            complement(978..1544)
                     /locus_tag="VIU37_02985"
     CDS             complement(978..1544)
                     /locus_tag="VIU37_02985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012936.1"
                     /translation="MRRIADRGAVAAAYVGIGMAVTIVASFTLIIPIEGLIWLFALPS
                     GLLIGYYANQRSNRRAGPWRRILTNGLFASVVTGLSMVALLLLLKVLFFYGDNGYRDP
                     GLGGTLSCSTGADCVYQRYLDADRGPDLVAAGVTDASSFTAFYWGEQLSNAGTVLALT
                     VLGGLGGAALYGLSRPKAAPPATIAAAR"
     gene            complement(1541..>1940)
                     /gene="eno"
                     /locus_tag="VIU37_02990"
     CDS             complement(1541..>1940)
                     /gene="eno"
                     /locus_tag="VIU37_02990"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000103948.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY6012937.1"
                     /translation="GWRELTARLGSRVQLVGDDIVVTNPAFIAKGIRERAMNSVLIKL
                     NQIGTLSETIDAINLARSAGWTAMVSHRSGETEDTTIADFVVAMGTGQIKSGAPSRSE
                     RVAKYNRLLRIEGELGDAARYPGRAALSGT"
BASE COUNT          290 a          675 c          676 g          299 t
ORIGIN      
        1 cgccagcgca gccggcacct ccggatgcga gcgctcgagg gtccctggat cgagccctgg
       61 gtcaaccggc cgtcgcatcc ctacaaccgg ttgttgacgg gtctcggcat ccgtcacgcc
      121 gccttcgcgc cgatgcgctg ggacgggaac ctcatcgggt tgctctcggt tgacgccacc
      181 ggggccgtgt ccgaggcgga cctcacggac tcgctgggcg cgatcgtcga gttcggcgac
      241 ctcgccgcgg cattgatcgg gcgggacgtc gccgcacgca ccgaggccgg ccgcgctcgc
      301 gacctgatcg gcgccatcat cgagcggcgc cagttccacc cggtcttcca gccgatcgtc
      361 gatctggaaa cggatgccat cgtcggcttc gaggccctca cccggttcga cgacgccgtg
      421 ccgccgaacg tgcggttcga cgaagccgaa gcgatcggcc tggggttcga gctcgaggcc
      481 gcgacgctcg aagcggcgct ccgtgccgcg acggcgctgc cgcgagggct gtggctgaac
      541 gtgaatacgt cgccggggtt catcgaggcc ggcgagccgc tccggaaggt cctgcggacg
      601 acccggcgcc atctcgtgct cgagatcacc gagcattcgg cgatcgccga ttacgcggcg
      661 ttccacgtga cggtggccga ccttcgcccg cgggtcgagc tcgcggtcga cgacgcgggg
      721 gcagggttcg ccagcctccg ccacatcctg gagctgcgtc cggacttcgt gaaggtcgat
      781 cggtcgatcg tggccggtct cgacgcggat ccggctcgac aggccttgat ggtcggcctg
      841 aggcatttcg tcagggcaac ccattgccgg ctgatcgcgg aaggcatcga aaccgaggcg
      901 gagcgcgcga cactgcggtc gctcgagata tccctgggcc agggctacct gctcggccgg
      961 ccgcttcccg cggcgggtca gcgagcggcg gcgatggtcg ccggtggcgc cgccttcggc
     1021 cggctcagtc catagagggc cgcaccgccg agaccgccga gcacggtcaa cgcgagcacg
     1081 gtcccggcgt tgctgagctg ctccccccag tagaacgccg tgaacgacga tgcgtcggtg
     1141 accccggcgg cgacgaggtc gggcccgcgg tcggcgtcga ggtagcgctg gtacacgcaa
     1201 tccgcccccg tcgagcagga gagcgtgccg cccagccccg ggtcgcggta cccgttgtca
     1261 ccgtagaaga acaggacctt gagcaggagc agcagggcca ccatggacag gccggtcacg
     1321 acggaggcga acagcccgtt cgtgaggatc cgtcgccacg ggcctgcccg ccggttggac
     1381 cgctgattgg cgtagtagcc gatcagcagt ccggatggca gcgcgaacag ccagatcagc
     1441 ccctcgatcg ggatgatcag ggtgaagctg gccacgatcg tgaccgccat gccgatcccg
     1501 acataggcgg ccgcgaccgc acctcgatcg gcgattcgcc tcacgtgccg gatagcgccg
     1561 ctcggcccgg atagcgggcg gcgtcgccga gctctccctc gatgcgcaac agccggttgt
     1621 acttggcgac ccgctcggaa cgggacgggg cgccactctt gatctggccg gtccccatcg
     1681 cgacgacgaa gtcggcgatg gtcgtgtcct cggtctcgcc cgagcgatgg ctgaccatcg
     1741 cggtccagcc cgcgctacgg gccaggttga tcgcgtcgat cgtctcggac agcgtgccga
     1801 tctggttgag cttgatcagg accgagttca tcgcccgttc cctgatgccc ttggcgatga
     1861 acgccgggtt ggtcaccacg atgtcgtcgc caaccagctg cacccttgag ccgagccggg
     1921 cggtcagctc gcgccagccc
//
LOCUS       DATDDI010000211         2062 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_566141, whole genome shotgun sequence.
ACCESSION   DATDDI010000211 DATDDI010000000
VERSION     DATDDI010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566141"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(703..858)
                     /locus_tag="VIU37_02995"
     CDS             complement(703..858)
                     /locus_tag="VIU37_02995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012938.1"
                     /translation="MPAFRSGWKPAESTPFELRRMQLPAILEGDTPVDPMSSPEPLSS
                     TTSWLKT"
     gene            1001..2062
                     /locus_tag="VIU37_03000"
                     /pseudo
     CDS             1001..2062
                     /locus_tag="VIU37_03000"
                     /inference="COORDINATES: protein motif:HMM:NF019236.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="post-COAP-1 domain-containing protein"
BASE COUNT          379 a          716 c          687 g          280 t
ORIGIN      
        1 aagaagcacg cgctgcttcg gctgcagccg aaccggcgct gcatcgcggc gcagctcgag
       61 cggcccgagc acccggaact caaccggcat cccgcctgtc agcttcgcac gttgtgagtc
      121 atttgtgagc accccagacc atcatcgccg ccacgaccgt gcagctctgc ccgctgccgg
      181 cgcagcagtt ccacgagcgg gcagatgaga agggggtggc ggtgcgatga aggcgaagct
      241 ggcgatcttg acgtcgtttg ctgcggcgtt tgcgtgtgtc gtcgtcggta gcgtcggagg
      301 cgcatccgcg tccgcagcgg tcgcggtcgc ggtcgtcgac gatgacggcc agcagtgccc
      361 ggaggcgacc tatacgacga tccaggcggc actgtcgtcg gcgcccgcgg gcgggcgggt
      421 cgaagtctgc cccggcctct acagcgggcc ggtcgtcgtt tcgcagccgg tcgacatcca
      481 ggccgtcgcg cgaccgggcg tgccacacgt gcctgcggca gtcgcgggtc gggacagctg
      541 cctctcgacc gccgccgacg atccggccac cgaatcgatc gtcgagaaca cagctcccta
      601 cggcgacggc ttcgagctgt acagcggcga cgtgcgcatc gacgggatgg tcatccgccg
      661 ctcacagcgc gcgggaatcg aggtgggtcg agccgggagc ggctacgtct tcagccacga
      721 cgtcgtcgag gacaacggct ccggactcga catcggatcc accggcgtgt cgccctcgag
      781 gatcgccggc aactgcatcc gccgcaactc gaacggcgtg gactccgccg gcttccagcc
      841 gctccgaaac gccggcatca gcgacaactc cttcaacgcg cagcggaacg gcgcgatcat
      901 cctccaggcc cagcagggcg ccgactcgct cgtcgacctg acgatctcgg gcaacgactc
      961 gaccggtgat gcaccggtgc ccgggttcgt cggcttcctc gcgctgatcg acggcgcccg
     1021 cgtcacggtg accgggaata ccgtgacgac gagcgccgcg gacgcaatct ggctgctcag
     1081 gaatcacgac gtccggatcg agggcaacac actccggggc gctcgagacg gaatcctttt
     1141 cgtccacggg aactccggtg agcccgcgca gcgcgcgatc gaggtcagcg gcaacgacat
     1201 cgagggcatg caagccgacg gaattcgcgc cgattcggcg ttcgccgacg atgctccttc
     1261 cctcgccgac tcgcacctcg accagaacac cctcacgtcc aatggtcgag acggcatccg
     1321 tctcggcagc ggaacgagcg gcaatctgat cgagagcaac gttctccgct cgaacgccga
     1381 gcacgactgc cacgacgaca gcagcggcgc aggcacggcg gggactgcga acacctggca
     1441 ggccaacgac ggcatcacgg aaaacgtgcc cggtctctgc ggtccgctgg acgacgacgg
     1501 cgacggcatc cccaacgcga gcgacaactg cccgagcgtg gcgaactcgg accagctgga
     1561 caccgacggt gacggccagg gcgatgcttg cgacccggac gacgacaacg acggagtcac
     1621 cgacgccgca gacaactgtg tcctggtgcc gaacgccgac caggccgaca ctgacggaga
     1681 cggggtcgga gacgcgtgcg atcctacccc cggctcgacg cctgggaagg tcacgggcgg
     1741 cggctggatc ggcagcacga aggatccgtt cgcgttcacg gtgcggtaca cgtcagggat
     1801 gaccagcccg agcggcgaag tcgtctacgg agccggcgga gcaggaaccc gactccgctc
     1861 atcgacgatc acgagcgtca tcatcagcgg cacacatgcc accatccgcg gaaccggcac
     1921 cgccgacgga accgccgtcg atttccggat cgacgtcgac gaccacggcg agccgggcag
     1981 tagcgacgca ttcacgatca cctggcccgg ctacacggcg gggggcgtac tgaacggcgg
     2041 caacatccaa gtcttcggct ag
//
LOCUS       DATDDI010000212         1617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_399749, whole genome shotgun sequence.
ACCESSION   DATDDI010000212 DATDDI010000000
VERSION     DATDDI010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399749"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..833)
                     /gene="tyrS"
                     /locus_tag="VIU37_03005"
     CDS             complement(<1..833)
                     /gene="tyrS"
                     /locus_tag="VIU37_03005"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEY6012939.1"
                     /translation="MPVTSETTTTRPGQGLAALIPELEWRGILHATTPGLAARLATGE
                     PISGYIGFDPSAPSLHIGSLVPIFGLLRLQRFGGRPVALVGGGTGMIGDPSGRSTERN
                     LLDRETLEANVLGLRAQLERFLDFTPGAGGAVMVNNLDWLGELSLIDFLRDTGKHFTI
                     PYMLAKDSVQVRLERGLSFTEFSYMLLQAYDFAHLNRTMGVELQMGGADQWGNITAGL
                     ELIRRTAGGAEDAEPAHGLAYKLLLNPSGAKFGKSDEGESVWLDPARTTPFAFYQYWL
                     DT"
     gene            911..>1617
                     /locus_tag="VIU37_03010"
     CDS             911..>1617
                     /locus_tag="VIU37_03010"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic peptidoglycan transglycosylase"
                     /protein_id="HEY6012940.1"
                     /translation="MQTSLARRQRHRRALGRQPRGRNGSTALGVVSAIVVALFVASFL
                     VAGIGLIFVVGAYNHYAAGLDDPKKLLTAIQFSQQTVVYDRTGKIELARLGDLKRDVV
                     TFDQLTPEIIDATTAIEDKDFWTNPGFDAGGIISAGLDTISGAPRGASTITQQLVRAK
                     LLPPSAFQGSTYERKIREIIQSVRLTQEFQGVEGKQQIITAYLNQNFYGNQSYGVAAA
                     AKSYFGKSLADLTLAQDA"
BASE COUNT          272 a          578 c          524 g          243 t
ORIGIN      
        1 gtgtcgagcc agtactggta gaacgcgaac ggcgtcgtcc gggccggatc gagccacacc
       61 gactcccctt cgtcgctctt gccgaacttc gccccggacg gattgagcag cagcttgtag
      121 gcgaggccgt gcgcgggctc cgcgtcctcg gcaccgccgg ccgtccgccg gatgagctcg
      181 agcccggcgg tgatgttgcc ccactggtcg gcgccaccca tctgcagctc gacgcccatc
      241 gtccgattga ggtgggcgaa gtcgtacgcc tgcaggagca tgtagctgaa ctcggtgaac
      301 gacagcccgc gctccagccg aacctggacc gaatccttgg ccagcatgta cgggatcgtg
      361 aagtgcttgc cggtgtcccg caggaagtca atcaggctga gctcgccgag ccagtcgagg
      421 ttgttgacca tgaccgcgcc gccggcgccc ggcgtgaagt cgaggaaccg ctcgagctgg
      481 gcacggaggc ctagcacatt ggcttcgagc gtctctcggt cgaggaggtt ccgctcggtc
      541 gaccggcccg agggatcgcc gatcatcccg gttccgcccc cgaccagggc gaccggccgg
      601 ccgccgaacc gttgcagccg gagcaggccg aagatcggga ccaggctgcc gatatggagc
      661 gagggcgccg acgggtcgaa cccgatgtag cccgagatcg gttcgccggt ggccaaccgg
      721 gcggccagtc cgggcgtcgt cgcatgcagg atgccccgcc actcgagctc ggggatgagc
      781 gccgccagcc cctgccccgg gcgggtggtc gtcgtctcgc tcgtcacagg cactcgagcc
      841 gggtcgtctc gaccctccgg gaggcggcca tcaggttcat cacgccccct atgctatcgt
      901 gcggccagag atgcaaacca gcctcgcgcg gcgccagcgc catcgacgcg cgctcggacg
      961 acaaccgcgt gggcgcaacg gctccacggc cctcggcgtc gtcagcgcca tcgtcgtcgc
     1021 cctcttcgtc gcctcgttcc tcgtggccgg catcgggctg atcttcgtcg tcggcgccta
     1081 taaccattac gcggcaggtc tcgacgatcc caagaagcta ctgaccgcca tccagttctc
     1141 gcaacagacc gtcgtctacg accggaccgg caagatcgag ctcgcccgcc tgggcgatct
     1201 caagcgcgac gtcgtcacct tcgaccaact gacgccggag atcatcgacg cgaccaccgc
     1261 gatcgaggac aaggacttct ggaccaaccc ggggttcgac gccggcggga tcatctcggc
     1321 cggcctcgac acgatcagcg gcgcgccgcg cggcgcctcg acgatcaccc agcagctggt
     1381 gcgggccaag ctcctcccgc cgtccgcctt ccaggggtcg acctacgaac gcaagatccg
     1441 ggagatcatc cagtcggtcc ggctgacgca ggagttccag ggcgtcgagg gcaagcagca
     1501 gatcatcacc gcctacctca accagaactt ctacggcaac cagagctacg gggtggcggc
     1561 cgcggccaaa agctacttcg ggaagtcgct ggccgacctg accctcgccc aggacgc
//
LOCUS       DATDDI010000213         3381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_150065, whole genome shotgun sequence.
ACCESSION   DATDDI010000213 DATDDI010000000
VERSION     DATDDI010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150065"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VIU37_03015"
     CDS             <1..258
                     /locus_tag="VIU37_03015"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6012941.1"
                     /translation="LQPGSRSVAWHDMTAVCRDWRGRGLAGALKRATVAWATANGLEA
                     LETGNDVDNAPMRAVNLRLGFRPLPDFLVMRGRPFGAIMEG"
     gene            255..512
                     /locus_tag="VIU37_03020"
     CDS             255..512
                     /locus_tag="VIU37_03020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012942.1"
                     /translation="MTTPPTGGPATLPPDPEAYDEVRNEHARARGLAAPYIAGGRDPN
                     PEVGRREERFYGRLLVAMVAGLILGGFIIGAVLSWVLAGAA"
     gene            509..1954
                     /locus_tag="VIU37_03025"
     CDS             509..1954
                     /locus_tag="VIU37_03025"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY6012943.1"
                     /translation="MTTRTGAPSRDVDASTWDASHDRLVGTLRDLIRIRSVNPPSPEA
                     PDGELVAAAHIAGLLRAAGLEPELLEPVPGRGSVHVRLRGDGTGGDPFLLLSHLDVVP
                     APPERWTHDPFAADLVDGYVYGRGAVDMKGMVALELEVVRLLADEARAAGLDPARDPL
                     PGLRRDVLFTCTADEEAGGTAGAKWLVDHRPDWLRAAGAVNECGGVTVTVAGRRLYPI
                     QVAEKGYAAYRIAVRGTWGHGSMPRPDNAAIMAAEVVARLAAPEPRRVTPVMARFLEQ
                     AAAAMPAPAASILHGLASDDAAAAARATEALQTGCDPMYARALGALLRDTISPDVIHA
                     GIKYNVIPGDAVVEVDCRILPGTTEPQMRQVLVERLGPDLAAACEIELFVFGAPVEAP
                     AEGELFELLVATILEHDPEAIPLPAMVPFATDAKQTQRLGVPTYGFSPLRLDPDERFL
                     ELFHGVDERVSVDALRWGLPVLYDVTRRFCG"
     gene            1997..2740
                     /locus_tag="VIU37_03030"
     CDS             1997..2740
                     /locus_tag="VIU37_03030"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY6012944.1"
                     /translation="MTTNSTRRAAAWLVAGLLALALPAGLSLPATVSAATVSVAVENY
                     DFAPASRTVAVGDVVRWTFSGDQHSVTSRDGLFDSGIKDAGGSFSFTFRQAGTYRYYC
                     VVHPSLMSGTIVVRAAATTPRPTVRPTAKPTPRPTARPTVTPGPTVRPTTKPSATPRP
                     TPTATPAPPAATSDPSPTPSTSVAPSPSPAASEAIVQPPSPSSAGAPPASSPTEPASD
                     TTPIVAGAALLVVIVAAGGLVLVRRRRAA"
     gene            complement(2737..2955)
                     /locus_tag="VIU37_03035"
     CDS             complement(2737..2955)
                     /locus_tag="VIU37_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012945.1"
                     /translation="MFQLGALESVLRLEHRHDDGTWSALEPRPSHHDAADHDPERDWA
                     NGRIYVCTTCNEEVRISDLAGEGGPAKP"
     gene            complement(3023..>3381)
                     /locus_tag="VIU37_03040"
     CDS             complement(3023..>3381)
                     /locus_tag="VIU37_03040"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6012946.1"
                     /translation="TQLAGLYVLADGSTLTVGELAEAIGRSPSATSRLVDGLVRRRLV
                     ERHQEPEDKRQRTLRLTPRGHAILRVVDRARAEQFLGAVRPLPTAERAIVAMGVAALA
                     THAISRRGRLIRTPSD"
BASE COUNT          428 a         1303 c         1201 g          449 t
ORIGIN      
        1 ctgcagcccg gcagccggtc ggtcgcctgg cacgacatga ccgccgtctg ccgggactgg
       61 cgcggccgcg gcctggccgg ggcgctcaag cgcgccaccg tggcctgggc gaccgcgaac
      121 ggcctcgagg cgctggagac cggcaacgac gtcgacaacg cgccgatgcg cgccgtcaac
      181 ctccggctcg gcttccggcc gctgccggac ttcctggtga tgcggggtcg gccgttcggc
      241 gccatcatgg aggggtgacg acaccaccga ccggcggtcc cgcgacgctg ccgccggacc
      301 ccgaagcgta cgacgaggtt cgcaacgagc acgcccgtgc acgcggcctg gccgccccat
      361 acatcgccgg cggtcgcgac ccgaacccgg aggtcggccg ccgcgaggaa cggttctacg
      421 ggcgcctcct ggtggcgatg gtcgcggggc tgatcctcgg cggcttcatc atcggcgcgg
      481 tgctgagctg ggtcctggcc ggggccgcgt gacgacccgc accggcgcac catcgcgcga
      541 cgtcgacgcg tcgacctggg acgcgtcgca cgaccggctg gtcggcacgc tccgcgacct
      601 gatcaggatc cgatcggtca atccgccatc gcccgaggcg cccgacggcg agctcgtcgc
      661 ggccgcgcac atcgccggcc tcctccgggc cgccgggctc gaacccgagc ttctggagcc
      721 cgtcccgggg cgcggatcgg tccacgtccg gctgcgcggt gacgggaccg gcggcgaccc
      781 cttcctgctc ctgtcgcacc tcgacgtcgt cccggcgccg cctgagcgct ggacgcacga
      841 ccccttcgcg gccgacctcg tcgacggcta cgtctatggg cgcggcgcgg tggacatgaa
      901 gggcatggtg gccctcgagc tcgaggtggt tcggctgctc gcggacgagg cccgtgccgc
      961 cggcctggac ccggcccgcg acccgctccc ggggctgcgc cgcgacgtgc tgttcacgtg
     1021 caccgccgac gaggaggccg gagggaccgc gggggccaag tggctggtcg accaccgtcc
     1081 cgactggctg cgcgcggccg gcgccgtcaa cgagtgcggc ggcgtgaccg tcaccgtcgc
     1141 cggccggcgg ctctacccga tccaggtcgc cgagaagggc tacgccgcct accggatcgc
     1201 ggtccgcggc acgtggggcc acggctcgat gccgcgtccg gacaacgcgg cgatcatggc
     1261 cgccgaggtc gtcgcgcgac tcgcggcgcc cgagccccgc cgggtcaccc ccgtcatggc
     1321 acggttcctc gagcaggccg cggcggcgat gcctgcgccg gcagcctcga tcctgcacgg
     1381 tctcgcctcc gacgatgcgg ccgcggccgc cagggcgacc gaggccctcc agaccggctg
     1441 cgacccgatg tacgcgcgcg ccctcggcgc gctcctgcgc gacacgatca gcccggacgt
     1501 catccatgcc ggcatcaagt acaacgtcat cccgggcgac gccgtcgtcg aggtcgactg
     1561 ccggatcctg ccgggcacga ccgaaccgca gatgcggcag gtcctggtcg agcggctcgg
     1621 gccggacctg gccgccgcgt gcgagatcga gctgttcgtg ttcggggcgc cggtggaggc
     1681 gccggccgag ggggagctgt tcgagctgct cgtggcgacg atcctggagc acgatccgga
     1741 ggcgatcccg ttgcccgcga tggtcccgtt cgcgaccgac gcgaagcaga cccagcgcct
     1801 cggcgtgccg acctacggct tctcgccgct ccggctcgat cccgacgagc ggttcctcga
     1861 gctcttccac ggggtcgacg agcgcgtctc ggtcgacgcc ctccgatggg gcctcccggt
     1921 cctctacgac gtgacgcgtc gcttctgcgg ctgacccgtc caaaccggcg ggcgccggcg
     1981 gtcgtatcac cacccgatga ctaccaactc gacacgccgg gccgccgcat ggctggtggc
     2041 aggcctcctc gccctggccc ttcccgccgg gctgtccctg cccgccaccg tcagcgccgc
     2101 gaccgtctcg gtcgcggtcg agaactacga cttcgcgccg gcatcgcgca cggttgccgt
     2161 gggggatgtc gtccgctgga ccttctccgg cgaccagcac tccgtaacct cgcgcgatgg
     2221 cctgttcgat tcggggatca aggacgccgg cggctcgttc tcgttcacgt tcaggcaggc
     2281 cgggacatac cgctactact gcgtcgtcca cccgagcctg atgtcgggga cgatcgtggt
     2341 tcgggccgcg gccacgacgc ccaggcccac ggttcgcccg acggcgaagc cgacgccccg
     2401 gccgacggcc aggcccacgg tcacaccggg gccgacggtc aggcccacga cgaagccgag
     2461 cgccacaccc aggccaacac cgaccgccac gcccgcgccg ccggccgcca cctcggaccc
     2521 ttcacccacg ccatcgacgt ccgtcgcgcc gagcccatcg ccggcggcgt cggaggccat
     2581 cgtccagccg cccagcccgt cgagcgccgg cgcgcctccc gcgtcgagcc cgaccgagcc
     2641 cgcgagcgac acgacgccga tcgtggccgg cgccgcgctg ctcgtcgtga tcgtcgcggc
     2701 cggcggcctg gtcctggtcc gccggagacg cgcggcctag ggcttcgccg ggccgccctc
     2761 gccggcgagg tccgagatcc ggacctcctc gttgcacgtc gtgcagacgt agatccggcc
     2821 attcgcccag tcacgctcgg ggtcgtgatc ggcggcgtcg tggtggctcg gcctcggctc
     2881 cagggccgac cacgtgccgt cgtcatgccg atgctcgagg cggaggacgc tctccagggc
     2941 acccagttga aacatctccg tgcacctcct gttggcggtc gatggtgacg cggacccggc
     3001 gtcgaggcaa gccctgggtc ggctagtccg atggcgtccg gatgagccgc ccgcgtcgcg
     3061 agatcgcgtg ggtcgccagg gccgcgacgc ccatcgccac gatcgcccgc tccgcggtgg
     3121 gcaggggacg gacggccccc aggaactgct cggcacgagc ccggtccacg acacgcagga
     3181 tggcgtggcc gcgaggcgtc aaccgcaagg tccgctggcg cttgtcctcg ggctcctggt
     3241 ggcgctcgac cagccggcga cgaacgaggc cgtcgaccag ccggctggtg gccgacggcg
     3301 accgcccgat cgcctcggcc agctcgccga cggtcagcgt gctgccgtcg gcgagcacat
     3361 agaggccggc gagctgggtg a
//
LOCUS       DATDDI010000214         2202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_87581, whole genome shotgun sequence.
ACCESSION   DATDDI010000214 DATDDI010000000
VERSION     DATDDI010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87581"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VIU37_03045"
     CDS             <1..468
                     /locus_tag="VIU37_03045"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEY6012947.1"
                     /translation="VMGAAQYDGRPSPVFAARLDHGVALFLAGDAPRLVLTGGKAAGD
                     RTTEAAVGRAFAIEHGVPPEAIIVEDRSRTTLESVRAVAALLEADGASSALFVSDRPH
                     MLRVLRMAADAGITAWGSPTRTSPIENDLGGRLDATVHELGALAYYFLVGGET"
     gene            875..1099
                     /locus_tag="VIU37_03050"
     CDS             875..1099
                     /locus_tag="VIU37_03050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012948.1"
                     /translation="MKQAEEAAFVDLIACERDCRTCSYAAALDCDGNCGVCPHNGYCP
                     CVNPVVARSKTALRLIELRPILLQDLQVRS"
     gene            1203..>2202
                     /gene="prfB"
                     /locus_tag="VIU37_03055"
     CDS             1203..>2202
                     /gene="prfB"
                     /locus_tag="VIU37_03055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEY6012949.1"
                     /translation="MTQAPGFWDDGRAAQKVLREADGLRGELSTWNELGTRADDLLAA
                     LELLAETPDAELEAELDRDAGALETDYLRERTALLFSGPYDDRPALLSISAGAGGTEA
                     TDWTEMLLRMYLRWAERHRFPTEILDQQEGEQAGLKSVTVAVNGRRAYGWLRAERGVH
                     RLVRISPFDSQNRRQTTFALVEVLPEADEDVEIELDWDQIRVDTFRSQGAGGQHVNKT
                     DSAVRLTHLPTGIVAQSQNERSQTQNKEMAIKVLKARLLERQLEEKEAAVRLLKGEHV
                     EAGWGNQIRSYVLHPYQMVKDLRTSVETGNTAAVLDGDLDAFMQAELERLATGRPPS"
BASE COUNT          351 a          764 c          794 g          293 t
ORIGIN      
        1 gtgatgggcg cagcccagta cgatgggcgg ccctcacccg tgttcgccgc gcgcctcgac
       61 cacggcgtgg cgctcttcct ggccggcgac gcgccgcgcc tggtgctgac cggcggcaag
      121 gccgccggcg accggacgac cgaggcggcc gtgggccgcg ccttcgccat cgaacacggg
      181 gtcccgcccg aggcgatcat cgtggaggac cggagccgca cgacgctcga atcggtgcgg
      241 gcggtcgcgg cgctcctcga ggcggacggc gcttccagcg cgctgttcgt gtccgaccgg
      301 ccgcacatgc tgcgggtgct gcgaatggcc gcggacgccg ggatcaccgc ctggggatcg
      361 ccgacgcgga cgagcccgat cgagaacgac ctcggcggcc ggctggacgc gaccgtccac
      421 gagctcggag cactggccta ctacttcctc gtcggcggcg agacctgaac cggacgcgcg
      481 gaggtccgcc gccgacgaac agccagttcg acccggcagg gccaccgcgt cgctacgcaa
      541 gcgccgcgca gacgtccgtg acgatcggtg catccggttc atcgacgtga ccacgtagcc
      601 cgcccagttg tcggcggcgg cactcgtcca gccgacctcg gtcccggtcg cgaacaacac
      661 cggcggtgcc agctggcagc gcctcgcgcc gtagcggccg tcgggcggat tcgtcgatca
      721 gattcagcgt ggcgaactga tttcccctct tggcgagggg ggtttggccc cgtatactgg
      781 gccaaaaccc gccgttctgg gccgctcgag cccccggcac atctcgtcca agctccgttc
      841 aacccgcgtg cccgcagcag agagagggga gtccgtgaag caggccgagg aagcagcgtt
      901 cgtcgatctc atcgcctgcg agcgagattg ccgaacgtgc agctatgcgg ccgcgctcga
      961 ctgtgacggc aactgcggtg tctgccctca caacggctac tgcccatgcg tgaaccccgt
     1021 cgtcgcccga agcaagacgg ccctgcggct catcgagctg cgcccgatcc tgctccagga
     1081 tctgcaggtt cggagctagg tggaatcgtc cgccgtccgc gacctggctg aacggatccg
     1141 gtcgacctcg gggcatcttt gacctcgagg ccaaagccgc tcgcgtcgcc gagatcgagg
     1201 cactgaccca ggcacccggg ttctgggacg acggccgcgc cgcgcagaag gtcctgcgcg
     1261 aggccgacgg cctccgcggt gagctgagca cctggaacga gctcgggacc cgggccgacg
     1321 acctcctggc cgccctcgag ctgctcgcgg agacgcccga cgccgagctg gaggccgagc
     1381 tggatcgcga cgccggcgcg ctcgagaccg attacctgcg cgagcggacg gcgctcctgt
     1441 tctcggggcc gtacgacgat cggcccgcgc tcctgtcgat cagcgccggg gccggcggca
     1501 ccgaggcgac cgactggacc gagatgctcc tgcggatgta cctgcgctgg gcggagcggc
     1561 accgcttccc gacggagatc ctcgaccagc aggaaggaga gcaggccggc ctcaagagcg
     1621 tgaccgtggc ggtcaacggg cggcgtgcct acggctggct gcgggccgaa cgcggcgtgc
     1681 atcgtctggt gcggatcagc ccgttcgact cgcagaaccg gcggcagacc acgttcgcgc
     1741 tggtcgaggt gctcccggag gcggacgagg acgtggagat cgagctcgac tgggaccaga
     1801 tccgggtgga tacgtttcgg tcgcagggtg ccggcggcca gcacgtcaac aagaccgact
     1861 cggcggtgcg cctcacgcac ctcccgaccg ggatcgtcgc ccagagccag aacgagcgat
     1921 cgcagaccca gaacaaggag atggcgatca aggtgctcaa ggcgcgcctg ctggagcggc
     1981 agctggagga gaaggaggcg gccgtccggc tcctcaaggg cgagcacgtc gaggccggct
     2041 gggggaacca gatccggagc tacgtcctcc acccgtacca gatggtcaag gacctgcgga
     2101 cgagcgtcga gacgggcaac accgcggcgg tgctggacgg cgacctcgac gcgttcatgc
     2161 aggcggagct cgagcggctg gcgacggggc ggccgccgag cg
//
LOCUS       DATDDI010000215         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_378979, whole genome shotgun sequence.
ACCESSION   DATDDI010000215 DATDDI010000000
VERSION     DATDDI010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378979"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..365)
                     /locus_tag="VIU37_03060"
     CDS             complement(153..365)
                     /locus_tag="VIU37_03060"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEY6012950.1"
                     /translation="MDEGLRFVAAALAVGLGAIGTGVAQGRIGSAGAGAVAEKPEVMG
                     SIFILTALPETMVILGFVIAAIILFQ"
     gene            complement(367..>2110)
                     /locus_tag="VIU37_03065"
     CDS             complement(367..>2110)
                     /locus_tag="VIU37_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012951.1"
                     /translation="AELDAQLGTGSVRQPTSGPLAELWELDDRLLLGRVDRLGPIRAR
                     TARLTEARVRLNGEIARVDSYRDLFAGLSPVLARLPSVTGYDSTGVVMDARYRSILGA
                     IQAELERMTGGRCEVVSSDIGLDRVGAVLIYPERHAAEVRGLLGGRDLEEVPLPEELV
                     GVPFEQLGPRLGEQRDRLVAELHGIDAELAVLRARHGQEVQALRLVLADRIAERRALE
                     SAGASDHLVVLGGWVPERRLGDLRHALADELGAMVAVIEHGPSREDAAEAPVAFENGP
                     LFRAFEPLASFVVVPRYGSIDPTPLLALALPAFIGLMVGDIGYGFMLLALLVVLRLRW
                     PAASLVRTIWPIGIVSAIATIGFGFLFGELFGETGGQLFGLRPLWLDRREAIAELLVL
                     ALAIGIGQIGLGLVLGIVNAALLRHRRELAGRAALLACVTAVFVATAALFRFLPAEAG
                     FVALTAGAVALVLLVAAVGVRGPIEVVGALGNVLSYARLMAIGLASVMLGLVANRLGG
                     LMEGALAGILIAGVVHALNFVLGFFDASVQGIRLHYVEFFSKFVEPGGVPYAPFVSVL
                     GHPAGGFAGQAGGT"
BASE COUNT          352 a          783 c          743 g          232 t
ORIGIN      
        1 ggatgtctcc ggcctgccgg tccgcctcgt cgagtcgccg cccgatgtcg gccgccgtgg
       61 ccgcgtcgat ctcctggacg atctccgcga cgctcatgcc ggcggccagc cgtcggcggc
      121 gttcgtgacc gtcgcccgcg ccatcgaacc ggctactgga acaggatgat cgcggcgatg
      181 acgaagccga ggatcaccat cgtctccggc aacgccgtca ggatgaagat cgagcccatc
      241 acctcgggct tctcggccac ggcacccgcc ccggccgagc cgatccgccc ctgcgccacg
      301 ccggtcccga tggcgccgag cccgacggcc agggccgcgg ccacgaagcg aaggccttca
      361 tccatgtcac gtacctccgg cttggccggc gaagccgccg gctggatgac cgagcaccga
      421 cacgaacggc gcgtacggca cgccgccggg ctcgacgaac ttgctgaaga actcgacgta
      481 gtgcaggcgg atcccctgga ccgacgcgtc gaagaagccg agcacgaagt tgagcgcatg
      541 gacgacgccc gcgatgagga tcccggcgag ggctccttcc atcagcccgc cgagccgatt
      601 cgcgaccagg ccgagcatca ccgaggccaa tccgatcgcc atcagccggg catacgacag
      661 gacgttgccg agcgcgccga ccacctcgat cggaccgcgc acgccaacgg cggcgacgag
      721 cagcacgagg gcgacggctc ccgcggtcag cgcgacgaac ccggcctcgg ccgggaggaa
      781 ccggaacagc gccgccgtgg cgacgaagac ggcggtgacg caggccagca gggcggcccg
      841 gccggccagc tcgcgtcgat gccgcagcag cgcggcgttc acgatgccga ggacgagtcc
      901 cagcccgatc tggccgatcc cgatggcgag ggccagcacg aggagctccg cgatcgcctc
      961 gcggcgatcg agccagagcg gccgcagtcc gaacagctgg ccgccggttt cgccgaacag
     1021 ctcgccgaag aggaagccaa acccgatcgt ggcgatcgcc gacacgatcc cgatcggcca
     1081 gatcgtgcgg acgagcgacg cggccggcca gcgcagccgg agcacgacca gcagtgccag
     1141 cagcatgaag ccatagccga tgtcaccgac catcagcccg atgaacgccg gcagcgcgag
     1201 ggcgagcagc ggcgtcgggt cgatcgagcc gtagcgaggc acgacgacga acgacgccag
     1261 cggctcgaag gcccggaaca gcggcccgtt ctcgaaggcg accggcgcct cggcggcgtc
     1321 ctcgcgcgac ggtccgtgct cgatcacggc gaccatcgcc cccagctcgt cggcgagggc
     1381 atgtcgcagg tcgccgaggc gtcgctccgg gacccagccg ccgaggacca cgagatggtc
     1441 gctcgcaccg gccgattcga gcgcccgccg ctcggcgatc cggtccgcga ggacgagacg
     1501 gagggcctgg acctcctgcc cgtggcgggc ccggaggacg gccagctcgg cgtcgatccc
     1561 gtgaagctcc gcgacgagcc ggtcgcgctg ctcgccgaga cgcggaccga gctgttcgaa
     1621 cgggacgccg accagctcct cgggcagcgg cacctcctcg aggtcgcgcc cgccgagcag
     1681 cccgcgcacc tcggcggcgt ggcgctccgg gtagatcagc acggcaccca cgcggtccag
     1741 tccgatgtcg gatgacacga cctcgcaacg gccgccggtc atccgctcga gctccgcctg
     1801 gatcgccccc aggatgcttc gatagcgggc gtccatgacg acgccggtcg agtcgtaccc
     1861 ggtgacggac ggcagacggg ccaggaccgg ggagagtccg gcgaacaggt cccggtagct
     1921 gtcgacgcgc gcgatctcgc cgttgagccg gacccgcgcc tcggtcaggc gcgcggttcg
     1981 cgcgcggatc ggcccgagac ggtccacgcg gcccagcagc agccgatcgt cgagctccca
     2041 gagctcggcg agcggaccgg acgtcggctg gcgcacgctg ccggtgccga gctgggcgtc
     2101 gagctcggcc
//
LOCUS       DATDDI010000216         2939 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_316500, whole genome shotgun sequence.
ACCESSION   DATDDI010000216 DATDDI010000000
VERSION     DATDDI010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316500"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VIU37_03070"
     CDS             complement(<1..347)
                     /locus_tag="VIU37_03070"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY6012952.1"
                     /translation="MSDITEAAVARRVPSLTEERLRVLSRRQPVTVLPGTLLAECVRT
                     IQRTGTGDSVFVCDAAGRLVGVLTERDIFGQIVGGRVDLSQPVESLMTTDPHTLDLDD
                     TIRDAIVLMRTGR"
     gene            398..1366
                     /locus_tag="VIU37_03075"
     CDS             398..1366
                     /locus_tag="VIU37_03075"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6012953.1"
                     /translation="MDRRRATGIALVLASAAGFGSGSLFAQPVYGAGVGWLVLSAWRF
                     LFGAGLTWGFLLLSARRRRGLRALDRRSVIAAMLLGLLYLGNSGTYFAGLETVSPSLA
                     ALIVYLYPALVAVLSLRFGRRLHGRRAWLALSIALAGVVLAVGGIDPSVAPPLQGLLL
                     IVASPVIYAVWIVLSARLSGERSDAVGDEASDGASATAATALMMSATAAVYWVVALGS
                     GQPVLPGEIPAEAWYGLAGVGVLSTFVAIQTFYAGAQRVGAAQAALISTVEPIWTIAL
                     AALLFGVALTPVQLAGGALILIGVLVAQTGPAADRAPGPAVRVADE"
     gene            complement(1382..2173)
                     /locus_tag="VIU37_03080"
     CDS             complement(1382..2173)
                     /locus_tag="VIU37_03080"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HEY6012954.1"
                     /translation="MTDRHPSAPVPGFTDLRSRILGGETLFGTFVTLGSPMAAEICGR
                     AGFDWVIIDLEHGAAHESELLTSLYAVGSTPATALVRPRSADRLRVGRVLDLGAHGLM
                     IPRIDLPEQAAEVISFMRYPPDGTRGLALSTRGAGLGELGHADVRAINDRVVGIIQVE
                     SPSAVEHASEIAAIDGVDVLFVGPADLSHSMGIPGQFDDPRFHAALERVVAAAEGAGK
                     AAGILLFNMAVLPRHLELGFRFIGLGSDNSFVADGARAAMGHARR"
     gene            complement(2239..>2939)
                     /locus_tag="VIU37_03085"
     CDS             complement(2239..>2939)
                     /locus_tag="VIU37_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012955.1"
                     /translation="FGSYAGYGIPYNVVTATTPRSTVTFDYDDESDHVGYPIPANPRI
                     EGGSDGHILLVDKDACRLYELFDARRETAGWAAGSGATWDLRSNALRPEGWTSADAAG
                     LPILPGLVRYDEVAAGAIAHALRFTASQTRRAYDYPARHYASSSTSTSLPPMGLRVRL
                     KASFDTSGLSPQARVIAEALKRYGMILADNGSPWYVTGVSDPRFDDDVLHELDAVTGR
                     DLEVVDTSGLVNGP"
BASE COUNT          375 a         1014 c         1093 g          457 t
ORIGIN      
        1 taccgaccgg tccgcatcag cacgatcgcg tcgcggatcg tgtcgtcgag gtcgagggtg
       61 tgcgggtcgg tcgtcatgag cgactcgacg ggctggctca ggtcgacccg gccgccgacg
      121 atctggccaa agatgtcccg ctcggtcagg accccgacca gccgcccggc cgcatcgcag
      181 acgaagaccg agtcaccggt tcccgtccgc tggatggtcc ggacgcactc ggccaacagc
      241 gtgcccggga ggaccgtgac gggctggcgc cggctcagga cgcgcagtcg ctcctcggtc
      301 aacgacggga cccggcgcgc gaccgcggct tcggtgatgt cactcacctc gccagtgtag
      361 tgcgtcaccc gctcccgggg ctgctagcct cccgccgatg gatcgacgac gtgccaccgg
      421 catcgccctc gtcctggctt cggcggccgg gttcgggtcg ggctcgctgt tcgcgcagcc
      481 cgtctacggg gccggcgtcg gctggctggt gctgtcggcc tggcggttcc tgttcggcgc
      541 cgggttgacc tggggcttcc tcctgctgtc ggccaggcga cggcgtggcc tgcgtgccct
      601 cgaccggcga tcggtgatcg cggcgatgct cctcgggctc ctgtacctgg gaaattccgg
      661 gacgtacttc gccggtctcg agaccgtctc gccgtcgctc gccgcgctga tcgtctacct
      721 ctatccggcg ctggtcgccg tcctgtcgct ccggttcgga cggcgcctgc acggccggcg
      781 cgcgtggctg gcgctgtcga tcgcgctggc cggggtcgtg ctggcggtcg gcgggatcga
      841 tccgtcggtc gcaccgccgc tccagggcct gctgctgatc gtcgcctccc cggtcatcta
      901 cgcggtctgg atcgtcctgt ccgcccggct ctccggcgag cgctcggacg cggtcggcga
      961 cgaggcgtcg gatggcgcct ccgccacggc ggcgacagcg ctgatgatgt cggccacggc
     1021 ggccgtctac tgggtggtcg ccctgggcag cggccagccg gtcctgccgg gagagattcc
     1081 tgccgaggcc tggtatggcc tggccggggt gggcgtcctg tcgacgttcg tcgcgatcca
     1141 gaccttctat gcgggcgccc aacgggtcgg agccgctcag gccgcgctga tcagcacggt
     1201 cgaaccgatc tggacgatcg cgctggccgc gttgctgttc ggcgtggccc tgaccccggt
     1261 ccagctcgcc ggcggggcgc tgatcctcat cggcgtgctc gtcgcccaga cgggaccggc
     1321 agccgatcgc gcgccggggc ccgcggtgcg agtggccgac gagtagctgg ggctcgccag
     1381 gtcagcggcg ggcgtgcccc atggccgcgc gcgccccatc ggcgacgaac gagttgtccg
     1441 agccgagccc gatgaaccgg aacccgagct cgaggtgccg cggcagcacg gccatgttga
     1501 acaggaggat gccggccgcc ttgcccgccc cctccgccgc ggccaccacg cgctcgagcg
     1561 ccgcatggaa gcgcggatcg tcgaactggc ccgggatccc catgctgtgg ctgagatcgg
     1621 cgggaccgac gaacagcacg tcgacgccgt cgatcgcggc gatctccgac gcgtgctcga
     1681 ccgcgctcgg cgactcgacc tggatgatcc cgacgacgcg gtcgttgatc gcacggacgt
     1741 cggcatgtcc gagctcgccg agcccggcgc cgcgggtcga cagggcgaga ccgcgggtgc
     1801 cgtcgggtgg gtagcgcatg aacgagatga cctccgcggc ctgctccggg aggtcgatcc
     1861 tcgggatcat cagcccgtgg gcacccaggt cgagcacgcg cccgacccgc agccggtcgg
     1921 cggaccgtgg cctgacgagc gccgtggccg gggtggatcc cacggcgtag aggctcgtca
     1981 gcagctcgga ctcgtgggcg gcgccgtgtt cgaggtcgat gatcacccag tcgaaaccgg
     2041 ctcgaccgca gatctcggcg gccatcggcg agccgagcgt cacgaacgtt ccgaacagcg
     2101 tctcgccgcc gaggatcctg gagcgcaggt cggtgaagcc ggggaccggc gcggatggat
     2161 gtcggtctgt catcggtgca tgatgcccgc tcggagggca cgtgcgctgc ggcggggcga
     2221 tcaggtcggg ccggccggct acgggccgtt gaccagcccg ctcgtgtcga ccacctcgag
     2281 gtcgcgaccg gtgaccgcgt cgagctcgtg caggacgtcg tcgtcgaaac gcggatcgct
     2341 gacgccggtg acgtaccacg gcgatccgtt gtcggcgagg atcatcccgt agcgcttgag
     2401 cgcctcggcg atgacccgcg cctgtggcga caggcccgac gtgtcgaacg acgccttgag
     2461 ccggacacgc agccccatcg gtggcagcga ggtcgaggtc gacgagctcg cgtagtgccg
     2521 ggccggatag tcgtaggcac gccgggtctg gctggcggtg aagcgcaggg cgtgggcgat
     2581 ggcacccgcg gcgacctcgt cgtagcggac gagcccgggc aggatcggca ggccggccgc
     2641 gtcggcgctc gtccagcctt cgggtcgaag ggcattcgag cggaggtccc aggtggcgcc
     2701 gctgcccgcg gcccagcccg cagtctcccg gcgcgcgtcg aacagctcgt acagccggca
     2761 ggcatccttg tcgaccagga ggatgtggcc gtcggatccg ccctcgatcc tgggattcgc
     2821 cgggatgggg tagccgacgt gatcggattc gtcgtcgtag tcgaaggtga cggtcgatcg
     2881 gggcgtggtg gcggtgacga cgttgtacgg gatgccgtac ccggcgtacg acccgaaat
//
LOCUS       DATDDI010000217         3101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_337422, whole genome shotgun sequence.
ACCESSION   DATDDI010000217 DATDDI010000000
VERSION     DATDDI010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337422"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VIU37_03090"
     CDS             complement(<1..686)
                     /locus_tag="VIU37_03090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012956.1"
                     /translation="MPRPSLALAYVAIGAALIVVHAWLGVGSIGQTVVYELVGASAMV
                     AMVFGAWRYRPERRLPWILMAIGQASFVCGDLLWDWYEAIGESPFPSLADVLYLAGYP
                     FIGVGLLLLIRRRLGDGDRGGILDAAILTTAAAIMSWTFIIQPQLTASDLDPVSLAIS
                     LAYPIGDLLLIGVAMGLLTAPGARTPSFLMLAASLVCLLVADQIYAVQSLDETYVSGG
                     PLDLVYLASY"
     gene            complement(898..1278)
                     /gene="erpA"
                     /locus_tag="VIU37_03095"
     CDS             complement(898..1278)
                     /gene="erpA"
                     /locus_tag="VIU37_03095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEY6012957.1"
                     /translation="MIDQQPTVVSLTDAAVLKLQELTKEETNPQIGLRVYVYSGGCSG
                     FRYGMMLEDAPTPEDRVLEASGIKVYVDGQSVDLLKGSQIDYVDTLMGAGFTVNNPNA
                     VAACGCGSSFRTADDAGSARGCAH"
     gene            complement(1410..2639)
                     /locus_tag="VIU37_03100"
     CDS             complement(1410..2639)
                     /locus_tag="VIU37_03100"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEY6012958.1"
                     /translation="MSRDPHRALREAWIIEAVRTPVGRYGGALASVRPDDLAAAVLRA
                     VVDRSGIEPSLIEDVILGCANQAGEDNRNVARMALLLAGLPVEVGGLTVNRLCGSGLQ
                     AINSAAHAIAVGDGDVFIGGGVESMTRAPYVMAKADAPWDRGPRELQDTTLGWRFLNP
                     RLAERHYPYSMGETAENVAERWEVGRELQDAFALASQQKAVAAIEAGRFDGQIVPIPV
                     PQRKGDPVLVTRDEHPRADTSAEALARLRPAFRDGGTVTAGNASGINDGASAVLLVEA
                     ERARELGLRPMARVVSTAVAGVDPAVMGVGPVPATRKALDRAGIGVAELDLVELNEAF
                     ASQSIVCINELGLDPAKVNVNGGAIALGHPLGMSGGRLITMLSHELRRTGGRYGLATM
                     CIGVGQGIATIIERIDG"
     gene            complement(2636..>3101)
                     /locus_tag="VIU37_03105"
     CDS             complement(2636..>3101)
                     /locus_tag="VIU37_03105"
                     /inference="COORDINATES: protein motif:HMM:NF012928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6012959.1"
                     /translation="VEAGVASVEAIDAALREAGFPLGPFELMDLAGLDVNLAAARGIW
                     EGLGRPERLRPSTLPERLVADGRLGRKTGGGFYRYGEAGRGAVDPAFAGGPTTLGATE
                     IRDRILSAIVAEARLAAGEGVATEGEIDLAMRLGAGHPAGPFERAAAPTIDP"
BASE COUNT          476 a         1135 c         1071 g          419 t
ORIGIN      
        1 atgtacgacg ccagatagac gagatccagg ggcccgccgc tgacatacgt ctcgtcgagc
       61 gactggaccg cgtagatctg gtcggcgacg aggaggcaga cgaggctcgc ggcgagcatc
      121 aggaacgaag gcgtccgcgc gccgggcgcc gtcagcagcc ccatggcgac gccgatcagg
      181 agcaggtcgc cgatcgggta cgcgaggctg atcgcgagcg acacggggtc gagatcgctg
      241 gcggtgagct gtggctggat gatgaacgtc cacgacatga tggctgcggc cgtggtgagg
      301 atggccgcat ccaggatccc gccgcgatcg ccgtcgccca ggcgccgccg gatcagcagc
      361 agcaggccga ccccgatgaa cgggtacccg gcgagataga gcacgtccgc gagcgagggg
      421 aacgggctct cgccgatcgc ctcgtaccag tcccacagga ggtcgccgca gacgaacgaa
      481 gcctggccga tcgccatgag gatccagggc aaccgccgtt cgggtcggta gcgccaggcg
      541 ccgaagacca tggccaccat ggccgaggcg cccacgagct cgtagacgac ggtctggccg
      601 atgctgccga ccccgagcca ggcgtggacc acgatcagcg ccgcaccgat cgccacatac
      661 gccagggcga gggagggtcg aggcatgaac gtacgacgga ttgacatgac acctgcgcgc
      721 gctgaccgcc cccggccacc acggagcgtg cacccgatcc ggtcacgcac gcatggctca
      781 ggggtacggt acagcgtgcc caatggtccg tgccaccggg aatcacgaag ccgccggagg
      841 tccggcggct tcccaggtcg tggagttgac gcgcggcgcg ccgcgcaggt cagggcgtca
      901 gtgcgcgcag cccctcgccg agccggcgtc gtcggcggtg cggaagctgg agccgcagcc
      961 gcacgccgcg accgcgttcg ggttgttgac cgtaaagcct gcgcccatca gcgtgtcgac
     1021 gtagtcgatc tgcgagccct tgagcaggtc cacgctctgg ccatcgacgt agaccttgat
     1081 cccgctggcc tccagaacgc ggtcctcggg tgtgggggca tcctcgagca tcatcccgta
     1141 gcggaacccg gagcagccgc cggagtagac gtagacgcgc aggccgatct gggggttcgt
     1201 ctcttccttc gtcagctcct gcagcttgag gaccgcggcg tcggtgaggg agacgaccgt
     1261 cggctgctgg tcgatcatca ggctggaacc tccgggattg gcgtgctggc tcgtcgacac
     1321 ggggtgacta ccggccatcg tacgcaaggc aactggtttc gacaagcacc cgcgtcgaaa
     1381 accgccagcc gagacgccgc ggcgcagccc tacccgtcga tccgttcgat gatcgtggcg
     1441 atcccctggc ccaccccgat gcacatcgtg gccagcccgt atcgcccgcc ggtccgccgc
     1501 agctcgtgcg acagcatcgt gatcagccgc ccaccgctca tcccgagcgg gtggcccagt
     1561 gcgatggcgc cgccgttgac gttgaccttc gcgggatcga gccccagctc gttgatgcac
     1621 acgatcgatt gcgaggcgaa cgcctcgttg agctcgacga ggtccagctc ggctacgccg
     1681 atcccggctc gatcgagcgc cttgcgcgtg gccgggacgg gcccgacccc catgaccgcc
     1741 ggatccacgc cggcgacggc ggtcgagacg acccgcgcca tcggccgcag cccgagctcg
     1801 cgcgcccgtt ccgcctcgac gagcagcacc gccgacgccc cgtcgttgat cccggaggcg
     1861 ttcccggcgg tcaccgtccc gccgtcgcgg aaggccggcc gcaagcgggc gagcgcctcg
     1921 gccgacgtgt ccgcgcgcgg gtgctcgtca cgggtgacca gcacgggatc gcccttccgc
     1981 tgcggtacgg ggatcggcac gatctggccg tcgaaccgac cggcctcgat cgccgcgacg
     2041 gccttctgct gcgacgcgag ggcgaacgcg tcctggagct cccgccccac ctcccagcgt
     2101 tcggccacgt tctccgcggt ctcgcccatc gagtacggat agtggcgctc ggcgagcctc
     2161 gggttcagga aacgccagcc cagcgtcgtg tcctgcagct cgcgcggccc gcgatcccag
     2221 ggcgcgtcgg ccttggccat cacgtagggc gcccgcgtca tcgattccac gccgccgccg
     2281 atgaacacat cgccgtcgcc gaccgcgatc gcgtgcgccg ccgaattgat cgcctgcagc
     2341 ccgctcccgc acaaccggtt gacggtgagc ccgccgacct cgaccggcag cccggccagg
     2401 agcagcgcca tccgggcgac gttgcggttg tcctctcccg cctggttcgc gcagccgagg
     2461 atgacgtcct cgatgagcga cggctcgatc ccggaccgat cgaccaccgc ccggaggacc
     2521 gccgcggcca ggtcgtccgg gcggacgctc gccagcgccc cgccgtagcg accgaccggc
     2581 gtgcggaccg cctcgatgat ccacgcctcg cgaagcgctc gatgggggtc gcgactcatg
     2641 ggtcgattgt aggcgcggcg gcccgttcga acggcccggc cgggtgcccc gcgccgaggc
     2701 gcatggcgag gtcgatctcc ccctcggtgg cgaccccttc gccggcggcg agccgtgcct
     2761 cggcgacgat ggccgacagg atccgatcgc ggatctccgt cgcgcccagc gtcgtcggtc
     2821 cgccggcgaa cgccggatcc accgcccctc ggcccgcttc gccatagcgg tagaacccgc
     2881 cgccggtctt gcgcccgagc cggccatcgg cgaccagccg ttcgggcagc gtcgacgggc
     2941 gtagccgttc cgggcgaccg agaccctccc agatcccgcg ggccgcggcg aggttgacgt
     3001 cgaggccggc gagatccatc agctcgaacg gcccgagcgg aaacccggcc tcgcggagcg
     3061 cggcgtcgat ggcctcgacc gaggcgactc cggcttcgac c
//
LOCUS       DATDDI010000218         2787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_483097, whole genome shotgun sequence.
ACCESSION   DATDDI010000218 DATDDI010000000
VERSION     DATDDI010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2787
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483097"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..998)
                     /locus_tag="VIU37_03110"
     CDS             complement(<1..998)
                     /locus_tag="VIU37_03110"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6012960.1"
                     /translation="MTGAATASVGTPVAAGPAIETRGLSKRFGAILALDGLDLVVPRG
                     SVFGLLGPNGAGKTTTIRILTGLARPTAGTASVAGVEVALDEPRLHRRVGYLDQDPRF
                     YAWMTGRDLLELVGRLHGLSGTELRVRVGEMLARTGLAAAADRRIGGYSGGMRQRLGI
                     AQALLHRPEILFLDEPVSSLDPEGRRDLLELIAGLRGEATVVFSTHVLSDVERICDRI
                     AILDRGRRVTEGPLDELLAAHARPIYRLVPASGQDAAVAALIERLRDAPWSTDVGAAG
                     GLVRVTVSDEAAAGAGLLPLVVAAGVVLESFERARPTLEDVFLELVGPAPTAALDGR"
     gene            complement(995..1204)
                     /locus_tag="VIU37_03115"
     CDS             complement(995..1204)
                     /locus_tag="VIU37_03115"
                     /inference="COORDINATES: protein motif:HMM:NF024788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLD nuclease N-terminal domain-containing
                     protein"
                     /protein_id="HEY6012961.1"
                     /translation="MAELKTEQIIALLAPIILIQLGLMIAALVDLERDERHVRGGSKL
                     VWALVIVFVNVIGPIVYFVAGREEA"
     gene            1405..2226
                     /locus_tag="VIU37_03120"
     CDS             1405..2226
                     /locus_tag="VIU37_03120"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6012962.1"
                     /translation="MTDDRERWALILGGSSGMGQATAITLAKAGYNICGIHLDFRAAL
                     AHVEEVKAAIESAGVEALYINMNAADDEKRAAALATLRERFDRSAAAGRHAYVRVVMH
                     SLAFGSLVPFISDDPKAGVDRKKMEMTQDVMANSLVYWVQDLYRGGFLEQGSKIYAMT
                     SEGSSRVVPSYGVVSSAKAALESHIRQLAMELAQTRKGITANTIRAGVTMTPALMKIP
                     EHDMIIESATKRNPTGRMTTPQDVANAILALSGDGTEFINGEIIGVDGGEFITGS"
     gene            2245..>2787
                     /locus_tag="VIU37_03125"
     CDS             2245..>2787
                     /locus_tag="VIU37_03125"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY6012963.1"
                     /translation="MGHRVIVVSSVNVDLVVAVERLPAPGETVVGGRFERHHGGKGGN
                     QAVAAARLGATTAFVGAIGDDAFGRDARDALAADRIDLRGLACLEGEATGVALILVDA
                     EGENSIAVAGGSNVALRPEHVREALATLQPGPGDIVLVGHEIPTAVAHEALRNGRSSG
                     ATTILNPAPAGGLEPSTLGLA"
BASE COUNT          425 a         1007 c         1013 g          342 t
ORIGIN      
        1 cgcccgtcga gggcggcggt cggcgccgga ccgaccagct cgaggaacac gtcctcgagg
       61 gtggggcggg cccgctcgaa cgattcgagg acgacgccgg cggccactac gagcggaagc
      121 agcccggcgc cggcggccgc ctcgtcggag accgttaccc ggaccagtcc tccggcggcg
      181 ccgacgtcgg tcgaccaggg agcgtcacga agccgctcga tgagcgcggc gaccgccgca
      241 tcctgcccgg acgccgggac gagccggtag atcggccggg cgtgcgcggc gagcagctcg
      301 tcgagcggtc cctcggtcac ccgccgcccg cggtcgagga tcgcgatgcg gtcacagatc
      361 cgctcgacgt cggacagcac gtgcgtcgag aacaccacgg tggcttcccc gcgaagtccc
      421 gcgatcagct ccagcaggtc gcgccggccc tccgggtcga gcgagctgac cggctcgtcg
      481 aggaacagga tctcggggcg gtggagcagg gcctgggcga tccccagccg ctggcgcatg
      541 ccgcccgagt agccgccgat ccggcggtcc gcggcggcgg ccaggcccgt ccgggccagc
      601 atctcgccga cgcgcacccg gagctccgtg ccggacagcc cgtggagccg gccgacgagc
      661 tcgagcagat cgcgcccggt catccaggcg tagaaccgcg gatcctggtc caggtacccg
      721 acccgccggt ggagcctcgg ctcgtcgagc gcgacctcca cgccggccac ggacgcggtc
      781 ccggcggtgg gccgggccag cccggtgagg atccggatcg tcgtcgtctt gcccgcgccg
      841 ttggggccga gcagcccgaa caccgatccg cgggggacga cgaggtcgag gccgtcgagc
      901 gccaggatcg cgccgaaccg cttcgacagg ccacgggtct cgatggccgg gccggccgca
      961 acgggtgtcc cgaccgaagc ggtcgccgcg ccggtcacgc ctcttcccgc ccggccacga
     1021 agtagacgat cggcccgatg acattcacga agacgatcac gagcgcccag accagcttgc
     1081 tgccgccgcg gacgtgccgc tcgtcgcgct cgaggtcgac gagcgccgcg atcatcaggc
     1141 caagctggat gaggatgatc ggggccagga gcgcgatgat ctgttccgtc ttgagctcgg
     1201 ccatcgcgcc gagcgtagcg tcacgaccgg tcgccgggaa ggtccgtcca gccccaacgg
     1261 cacaggccgg cccgcacgtc ccccggaccc gagacgcatg cgtggatgca cgcgtttcgg
     1321 gacgggcggc ccgatcggcc ctgctagact cggccgcgcc cccacaccgg gcagacgcgc
     1381 cgaatcaccc tccggaggaa gccgatgacc gacgaccgcg agcgctgggc cctgatcctg
     1441 ggcggatcgt ccgggatggg ccaggcgacc gccatcacgc tcgcgaaggc cggctacaac
     1501 atctgcggga tccacctcga cttccgcgcg gccctggcgc acgtggagga ggtcaaggcg
     1561 gcgatcgagt cggccggcgt cgaggcgctc tacatcaaca tgaacgcggc cgacgacgag
     1621 aagcgcgcgg cggcgctcgc caccctgcgc gagcggttcg accgatcggc ggcagcgggc
     1681 cgtcacgcct acgtccgggt cgtgatgcac tccctcgcct tcgggtcgct ggtgccgttc
     1741 atctcggacg atccgaaggc cggcgtggat cgcaagaaga tggagatgac ccaggacgtg
     1801 atggccaaca gcctcgtcta ctgggtccag gacctctacc gcggcgggtt cctcgagcag
     1861 ggctcgaaga tctacgccat gacctcggag ggctcctcgc gggtggtgcc gtcctacggc
     1921 gtcgtctcct cggccaaggc cgcgctcgaa tcgcacatcc gccagctggc gatggagctc
     1981 gctcagacgc ggaaggggat cacggccaac accatccggg ccggcgtcac gatgaccccc
     2041 gcgctgatga agatcccgga gcacgacatg atcatcgagt cggccaccaa gcgaaacccg
     2101 accggccgga tgacgacgcc gcaggacgtc gccaacgcga tcctggcgct gtccggcgac
     2161 gggaccgagt tcatcaacgg cgagatcatc ggcgtcgacg gcggcgagtt catcaccggt
     2221 tcgtagccgg cagcgggcgg cgtcatgggt caccgggtca tcgtcgtcag ctcggtcaac
     2281 gtcgacctgg tggtcgcggt ggagcggctc ccggcgcccg gcgagactgt cgtcggcggc
     2341 cggttcgagc ggcatcacgg cgggaagggc ggcaaccagg cggtcgcggc cgcccggctc
     2401 ggggcgacga cggcgttcgt cggcgcgatc ggcgacgacg ccttcgggcg cgacgcacga
     2461 gacgccctgg cggccgaccg gatcgatctc cgcgggctcg cctgcctcga gggcgaggcg
     2521 acgggcgtcg ccttgatcct ggtcgacgcg gagggcgaga acagcattgc cgtggccggc
     2581 ggctcgaacg tggcgctccg gccggagcac gttcgcgagg cgctcgcgac gctccagccg
     2641 ggacccggcg acatcgtgct ggtgggccac gagatcccga cggcggtcgc gcacgaggcc
     2701 ctccggaacg ggcggtcgag cggcgccacg acgatcctca acccggctcc ggccggcggc
     2761 ctcgagccgt cgaccctcgg cctggcc
//
LOCUS       DATDDI010000219         1767 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_170934, whole genome shotgun sequence.
ACCESSION   DATDDI010000219 DATDDI010000000
VERSION     DATDDI010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170934"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VIU37_03130"
     CDS             complement(<1..866)
                     /locus_tag="VIU37_03130"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012964.1"
                     /translation="MTAAPSTASPSAPSMFAVFRKRDFSLLWTAQLVSTIGSSLTDLA
                     AGILVYRVTGSALSVGLMLMATAVPSLVVGLLAGVVVDRYDRKRIMIATDLIRAALVA
                     SIPFLIAYDVAFLYLIVLVASGVKQFFDPAEQSVLPDVASEEELASANAFLSISSFGS
                     TAIGFAAAGLLASISLDLAFWFDAATFLFSAVCILFVRIAPNAAQEATNVRAVADNLR
                     AGLRTLVATPILRSTLIVFAPVLFAFGLWNVLLLPFAVKTLGGTEFQYGLQEGLTSLA
                     FVAGSLIMAKYI"
     gene            complement(906..1496)
                     /locus_tag="VIU37_03135"
     CDS             complement(906..1496)
                     /locus_tag="VIU37_03135"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEY6012965.1"
                     /translation="MDDPVAIRSTLAGPWGPVHVAATARGVVAVEWQMTEAAFDETLS
                     RRLGGRVAPAKPGRSFGGRAFDRRERHLAGGVKAIEAFLAGRQAKPDVAFDLADRPAW
                     DRRVLGAVAEIPWGHTASYAEIARRIGTPGAARAVGGALGRNPISFLIPCHRVIAADG
                     TLGGWGGDRWGDLGHRLETKRNLLLREGVTVALREG"
     gene            complement(1523..>1767)
                     /locus_tag="VIU37_03140"
     CDS             complement(1523..>1767)
                     /locus_tag="VIU37_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004050440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012966.1"
                     /translation="AATYSKMLQNLAWATGYNVVAIPVAAGLLVPWGIDLPMAVGAVA
                     MSASTIIVAANAQLLRRTPLRPAVAPPLVGSSGTLS"
BASE COUNT          291 a          623 c          636 g          217 t
ORIGIN      
        1 tcgatgtact tggccatgat caggctgccg gccacgaacg ccagcgacgt caggccctcc
       61 tggagcccgt actggaactc ggtgccgccg agtgtcttga ccgcgaacgg caggagcagc
      121 acgttccaca gcccgaacgc gaacagcacc ggcgcgaaga cgatcagcgt ggagcgcagg
      181 atcggcgtgg cgacgagcgt ccggagcccg gcccgcaggt tgtccgccac cgcccgcacg
      241 ttggtcgcct cctgcgcggc gttcggcgcg atccgcacga acaggatgca cacggcggag
      301 aacaggaacg tcgccgcatc gaaccagaac gcgaggtcga ggctgatcga ggcgaggagc
      361 ccggccgccg cgaagccgat cgcggtcgaa ccgaacgagc tgatcgacag gaaggcgttc
      421 gcggacgcca gctcctcctc ggacgcgacg tccggcagga cgctctgctc ggccgggtcg
      481 aagaactgct tgacgccgct ggcgacgagc acgatcaggt acaggaaggc gacgtcgtat
      541 gcgatcagaa acgggatgct ggcgacgagg gcggcccgga tcaggtcggt ggcgatcatg
      601 attcgcttgc ggtcgtagcg gtcgaccacg acgccggcca gcagcccgac gaccaggctt
      661 ggcacggcgg tcgccatcag catcaggccc acgctcagcg cggatcccgt cacccggtag
      721 acgaggatgc cggcggccag gtcggtcagc gacgagccga tcgtcgacac cagctgggcc
      781 gtccacagca gcgagaagtc gcgcttgcgg aagacggcga acatcgaggg agcggatggc
      841 gaggccgtgg acggggcggc ggtcacgcga tcctccgtgc agccccccgg cgacgttcgg
      901 ggagtctagc cctcccgcag ggcgacggtc acgccttcgc gcagcagcag gttgcgcttc
      961 gtctcgagtc gatgaccgag gtcgccccac cggtcgccgc cccagccgcc gagcgtgccg
     1021 tcggcggcga tgacccggtg gcaggggatc aggaacgaga tgggattgcg gcccagcgcg
     1081 ccgccgacgg ccctggccgc gccgggcgtc ccgatccgcc gggcgatctc ggcgtagctc
     1141 gccgtgtgac cccacgggat ctcggccacg gcgcccagga cgcgccggtc ccaggcgggc
     1201 cggtcggcga gatcgaaagc cacgtccggc ttcgcctggc gacccgccag gaacgcctcg
     1261 atcgccttga cgccgccggc gagatggcgc tcgcggcgat cgaaggcgcg gcccccgaac
     1321 gaccgcccgg gtttcgccgg cgcgacccgt ccgccgagcc gtcgcgacag ggtctcgtcg
     1381 aaggcggctt ccgtcatctg ccactcgacc gcgaccacgc cccgagccgt cgcggcgacg
     1441 tggaccggac cccacggccc cgccagcgtg gatcggatgg ccacgggatc gtccatctcg
     1501 cgagtgtgat ccagccgctg actcaggaca aggtgccgga gctcccgacc agcggtggtg
     1561 cgactgccgg ccggagcggc gtgcgacgga gcagctgggc gttggcggcc acgatgatcg
     1621 tggacgcact catcgcgacg gccccgacgg ccatcggcag gtcgatcccc catggcacca
     1681 gcagcccggc cgccacgggg atggccacga cgttgtagcc ggtcgcccag gccaggttct
     1741 ggagcatctt cgagtacgtc gcggccg
//
LOCUS       DATDDI010000220         1790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_399862, whole genome shotgun sequence.
ACCESSION   DATDDI010000220 DATDDI010000000
VERSION     DATDDI010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399862"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /locus_tag="VIU37_03145"
     CDS             complement(<1..717)
                     /locus_tag="VIU37_03145"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6012967.1"
                     /translation="MTAAIREAGRDDGDLATIVGIVNAVTPNDPTSIDEIHWADATYP
                     GTTRLLAHLDGRPVGVGTVGRIYVHPPEFDGLWATLAVLADARRQGIGTDLLSAISVR
                     ARAAGKGWLYVSVTEDHPDGMAFLAHRGFTEYERSKMARLDLAGMAAPAIDPPAGVEL
                     TTLAERPDLVEGVREVALEAFPDIPGGDEPISVGDLDEFRARDVDRPAIPAEAFFVAL
                     DRATDRVIGYASLILRPGSRT"
     gene            complement(714..1622)
                     /locus_tag="VIU37_03150"
     CDS             complement(714..1622)
                     /locus_tag="VIU37_03150"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6012968.1"
                     /translation="MTRPHPVAIGIKTSPQDTDWATVDSAWARIGRHDVFESAWVNDH
                     LTNARDPRGGASLEALTTVAALAHHVPGKWLGIAVLSATFRHPAVLAKQLTVLDHVTG
                     GRLIVGLGAGWHDPEHLPFGIPFPPIVDRFDRFESSLGVIRALFSDDARSLPGVVRPD
                     PYYPLDGATNEPGTLTPGGPPIWLGGQRRRGIDLAARFAQGWITPHLLPGGRTDRLPY
                     FVEHRAKLLARMAEIGRDPDGFEFALQVPTGATAESRRDGLRLALDGAEAGATHVVLS
                     MPPDQGAVGVDLVAAEVAVPLREALG"
BASE COUNT          233 a          636 c          700 g          221 t
ORIGIN      
        1 ggtccggctc ccgggtcgca ggatcaggct ggcgtagccg atgacccgat cggtggcgcg
       61 atcgagcgcg acgaagaacg cctccgcggg gatggccggc cggtcgacgt cgcgggcccg
      121 gaactcgtcc aggtcgccga ccgagatcgg ctcgtcgccg ccggggatgt ccgggaacgc
      181 ctcgagcgcg acctcgcgca cgccttcgac gaggtcggga cgctcggcca gcgtggtcag
      241 ctcgaccccg gccggggggt cgatcgccgg cgccgccatg ccggccaggt cgagacgcgc
      301 catcttgctg cgctcgtatt cggtgaagcc gcgatgcgcg aggaaggcca tgccgtccgg
      361 gtggtcctcg gtgaccgaca cgtacagcca gcccttgccg gccgcgcggg cacgcaccga
      421 gatggccgac agcaggtccg tcccgatgcc ctgccgccgg gcgtcggcca gcaccgcgag
      481 ggtggcccac agcccgtcga actccggcgg gtggacgtag atccgcccga ccgtgccaac
      541 gccgacggga cgtccgtcca ggtgcgccag gaggcgcgtc gtgccggggt aggtggcgtc
      601 ggcccagtgg atctcgtcga tcgaggtcgg gtcgttcggg gtgacggcgt tgacgatccc
      661 gacgatcgtg gcgaggtcgc cgtcgtcgcg gcccgcttcg cggatggcgg ccgtcacccg
      721 agggcctcgc ggagcggcac cgccacctcc gcggcgacca ggtcgacccc gacggccccc
      781 tggtcgggcg gcatggacag gaccacgtgg gtggccccgg cctcggcccc atccagcgcg
      841 agccggaggc cgtcccggcg cgactccgcc gtggccccgg tcgggacctg gagtgcgaac
      901 tcgaacccgt cggggtcgcg gccgatctcg gccatccgcg cgagcagctt ggcccggtgc
      961 tcgacgaagt acgggagccg gtcggtccgg ccgccgggca ggaggtgcgg cgtgatccag
     1021 ccctgcgcga accgggccgc caggtcgatc ccgcggcggc gctggccgcc cagccagatc
     1081 ggcggaccgc ccggggtcag cgtgccgggc tcgttggtcg cgccgtcgag cgggtagtac
     1141 gggtccgggc ggacgacccc cggcaggctc cgggcgtcat cggagaagag cgcccggatc
     1201 accccgagcg acgactcgaa ccggtcgaac cggtcgacga tcggcgggaa cgggatgccg
     1261 aacggcaggt gctcgggatc gtgccagccg gcccccaggc cgacgatcag gcggccaccg
     1321 gtgacgtggt cgaggacggt cagctgcttg gccaggacgg ccgggtgacg gaacgtcgcc
     1381 gacaggacgg cgatgcccag ccacttgccc ggcacgtgat gcgccagcgc ggccacggtc
     1441 gtgagggcct cgaggctggc gccgccccgg ggatcgcgcg cgttggtcag gtggtcgttg
     1501 acccaggccg actcgaagac gtcgtgccgg ccgatccgcg cccacgcgga atcgaccgtg
     1561 gcccagtcgg tgtcctgggg cgaggtcttg atcccgatcg cgaccgggtg cgggcgggtc
     1621 accgcgcccg gaggttggcg gtcatccgcg agccggtcgt gacggcgccc tgcgacgcgg
     1681 agccgacgag cgccgcgtac ttggccacca cgccgccccc gtaccgtgct tccggggggg
     1741 accatcgggt gaagcggcgg gcgacctcgt ccggcgggac gtcgaggtgg
//
LOCUS       DATDDI010000221         1762 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_254311, whole genome shotgun sequence.
ACCESSION   DATDDI010000221 DATDDI010000000
VERSION     DATDDI010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254311"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..712)
                     /locus_tag="VIU37_03155"
     CDS             complement(<1..712)
                     /locus_tag="VIU37_03155"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEY6012969.1"
                     /translation="MTTTQPAELGPDVQELERVTIRFAGDSGDGMQLTGTQFTRTAAV
                     FGNDISTLPDFPAEIRAPAGSLPGVSGFQISFSSSDIHTPGDQPDVLVAMNPAALKTN
                     VGDLPAGGALIINSDAFTQSNLNKAAYASNPLTDGSLKSYRVFEIPISTLNIRSLEGL
                     EMTSKQMDLTKNFFALGLMFWLYERSMDPTLSWIDDKFSARPVIAEANKRALKAGYAY
                     GETTEAFHTHYRVKPARLD"
     gene            complement(709..1209)
                     /locus_tag="VIU37_03160"
     CDS             complement(709..1209)
                     /locus_tag="VIU37_03160"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY6012970.1"
                     /translation="MSDITESAVARRVPSLTEERLRVLSRRQPVTVQPGTQLAECVRA
                     IQRTGTGDSVFVCDATGRLLGVLTERDIFGQIVGGRVDLSQPVESLMTTDPRTLDLDD
                     TIRDAIVLMRTGRYRNVPIVDDARRLVGVVRQADIIKYLAESFPEELLNLPPRLHQRM
                     KAAEGG"
     gene            1290..>1762
                     /locus_tag="VIU37_03165"
     CDS             1290..>1762
                     /locus_tag="VIU37_03165"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6012971.1"
                     /translation="MDRRHVTGIALVLVSAAGFGSGSLFAQPVYHAGVGWLVLSAWRF
                     LFGAGLTWAWLLLSAERRRGLRALDRRAVIAAAALGLLYLGNSGTYFAGLETVSPSLA
                     ALIVYLYPALVAVLSLRFGRRLHGSRAWLALAVALTGVVLAVGGIDPSVAPPIGGL"
BASE COUNT          216 a          592 c          640 g          314 t
ORIGIN      
        1 gatcgagcct ggcgggcttg acgcggtagt gcgtgtggaa ggcctcggtc gtctcgccgt
       61 aggcgtagcc cgccttgagc gcccgcttgt tcgcctcggc gatgaccggc cgggccgaga
      121 acttgtcgtc gatccagctg agcgtggggt ccatgctccg ctcgtagagc cagaacatca
      181 gccccagggc gaagaagttc ttggtcaggt ccatctgctt cgaggtcatc tccagaccct
      241 cgagggaccg tatgttcagg gtcgagatcg ggatctcgaa gacccggtag gacttgagcg
      301 agccgtcggt gagcgggttg ctggcgtagg cggccttgtt caggttcgac tgggtgaagg
      361 cgtcgctgtt gatgatcagc gctccgccgg ccggcaggtc gccgacgttg gtcttgagcg
      421 cggccgggtt catcgccacc aggacgtccg gctggtcccc cggcgtgtgg atgtccgacg
      481 acgagaagct gatctggaac ccggacactc ccggcagcga gcccgccggc gcccggatct
      541 cggccgggaa gtcgggcagc gtgctgatgt cgttgccgaa caccgcggcg gtccgggtga
      601 actgcgtgcc ggtcagctgc atcccgtcgc cggaatcccc ggcgaagcga atcgtgaccc
      661 gctcgagctc ctggacgtcg gggccgagct ccgccggttg tgtggtcgtc atccgccttc
      721 ggctgccttc atgcgctggt gaagccgcgg cgggaggttg agcagctctt ccgggaacga
      781 ctcggccagg tacttgatga tgtccgcctg ccggaccacg cccaccagcc ggcgggcatc
      841 gtcgacgatc gggacgttcc gataccgacc ggtccgcatc agcacgatcg cgtcgcggat
      901 cgtgtcgtcg agatcgaggg tgcgcggatc ggtcgtcatg agcgactcga ccggctggct
      961 caggtccacc cggccgccga cgatctggcc gaagatgtcg cgctcggtca gcaccccgag
     1021 gagccgcccg gtggcgtcgc acacgaacac cgaatcgccg gtgcccgtgc gctggatcgc
     1081 gcgcacgcat tcggcgagtt gggtgcccgg ctggaccgtg acgggctggc gtcggctcag
     1141 gacgcgcagc cgctcctcgg tcaacgacgg gacgcggcgc gcgaccgcgg attcggtgat
     1201 gtcactcacc ttgccagtgt agtgcgtcaa cgtggcgagg tcgcagcccg gccccgtgga
     1261 cgccgggccg ggctgctagc ctccggcgga tggatcgtcg acacgtcacc ggcatcgcgc
     1321 tcgtgctcgt ctccgcggcc ggcttcggat cgggctcgct gttcgcgcag cccgtctacc
     1381 acgccggcgt cggctggctg gtgctgtccg cgtggcggtt cctgttcggc gcgggcctga
     1441 cctgggcctg gctcctgctg tcggccgagc ggcgccgcgg actgcgcgcg ctcgaccgac
     1501 gcgcggtgat cgcggccgcc gcgctcgggc tcctgtacct cggcaactcg gggacgtatt
     1561 tcgcgggcct tgagacggtc tcgccctcgc tggcggcgct gatcgtctat ctctacccgg
     1621 cgctcgtggc ggtcctgtcg ctccggttcg ggcgtcggct ccacggtagc cgggcgtggc
     1681 tggcgctcgc ggtcgcactg accggtgtgg tcctggccgt cggcgggatc gatccctcgg
     1741 tcgccccgcc gatcggcggg ct
//
LOCUS       DATDDI010000222         1809 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_87723, whole genome shotgun sequence.
ACCESSION   DATDDI010000222 DATDDI010000000
VERSION     DATDDI010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87723"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..>1809
                     /locus_tag="VIU37_03170"
     CDS             122..>1809
                     /locus_tag="VIU37_03170"
                     /inference="COORDINATES: protein motif:HMM:NF016732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEY6012972.1"
                     /translation="MSVFVRPPQKAEPVEKAGPIGPGAGVLQTEYLLPMLLPTDPARK
                     MRMALSVGAEVSWIRAAERVISGKVGGDPELSGAVKWHLEDPEGETIDEEYKDERAIE
                     AYRLLAYPAAGLTDSEDVDAVADVQISGAEYQGEMWEVTSRHMGLAGQGYWFLDSLNE
                     FGIPKAMLYVRPDRLFPGLDEAGNLTEWWLDPKSGRLDSGTKLELKEVIQFPLEAPVT
                     GFLAMGLIESCILKAQLSGHIDKYLGGLLAGSAKLSGMYAPKAGAIDDDGQWDQLVRD
                     IRNVAEQPDASKKVLLMRGPMEYTRTQATVQEMAVVDLLGRNRDDLLALWGVPLSQVG
                     GSSPAGLNSGDIRKYDEAALWQNAVVMRLVPMKQRIQRRLLNRWKPWIGWAPKLILDI
                     PEFDDDSPRYDKVQKSMAIPMDNDERRAMLNLDPLDPSIIGPTGKPLGLEVWMANTFS
                     PVGIAPNQVTEPAQQVQQSNVPAWSAYGASAAAAAATPAATPTDGIPTKRPEKPSMST
                     MAGLGGQVPAGGAGATLKAKPDPKMVLEALLGSLRDQWPPDQLDLVAQGDWTFDP"
BASE COUNT          286 a          641 c          626 g          256 t
ORIGIN      
        1 tcatggtcag cctggcagcg ggcacggcag gcttcgcgct cctgtcgctg gcctatggcc
       61 tcatcttcct ctcggccgcc acgctcggcc ttttcctcgt caacgtctgg agggtcggcc
      121 ggtgagcgtc ttcgtgcgac cgccgcagaa ggcggaaccc gtcgagaagg ccggacccat
      181 cggcccgggt gccggcgtgc tccagaccga gtacctgctg ccgatgctcc tgccgaccga
      241 cccggctcgg aagatgcgga tggcgctctc ggtcggtgcc gaggtgtcgt ggatccgcgc
      301 ggccgagcgc gtcatcagcg gcaaggtcgg cggcgacccc gagctctccg gcgcggtcaa
      361 gtggcacctc gaggaccccg agggcgagac gatcgacgag gagtacaagg acgagcgggc
      421 catcgaggcg taccgcctgc tcgcctatcc tgccgccggc ctgaccgact ccgaggacgt
      481 cgatgccgtg gccgacgtcc agatcagcgg cgccgagtac cagggcgaga tgtgggaggt
      541 gacgagccgc cacatgggcc tcgccgggca gggctactgg ttcctcgact cgctcaacga
      601 gttcggcatc cccaaggcga tgctctacgt ccgacccgac cgcctgttcc ccgggctcga
      661 cgaggcgggc aacctcaccg agtggtggct cgacccgaag agcgggcgcc tggactcagg
      721 aacgaagctc gagctcaagg aggtcatcca gttcccgctc gaggcgcccg tcacgggctt
      781 cctcgcgatg ggcctcatcg agtcgtgcat cctgaaggcg cagctctcgg ggcacatcga
      841 caagtacctc ggcgggctgc tcgcgggctc ggcgaagctc tcgggcatgt acgcgccgaa
      901 ggctggcgcg atcgatgacg acggccagtg ggaccagctc gtccgcgaca tccgcaacgt
      961 cgccgagcag ccggacgcgt cgaagaaggt gctcctcatg cgcgggccga tggagtacac
     1021 ccggacgcag gcgacggtgc aggagatggc ggtcgtcgac ctcctcggcc gcaaccgcga
     1081 cgacctgctg gcgctctggg gcgtgccgct ctcgcaggtc ggtggctcct cgcctgccgg
     1141 cctgaactcg ggggacatcc gcaagtacga cgaggccgcg ctctggcaga acgccgtggt
     1201 catgcggctc gtgccgatga agcagcgcat ccagcgccgg ctcctgaacc gctggaagcc
     1261 gtggatcggc tgggcgccga agctcatcct cgacatcccc gagttcgacg acgactcgcc
     1321 gcggtacgac aaggtccaga agtcgatggc gatcccgatg gacaacgacg agcggcgggc
     1381 gatgctcaac ctcgacccgc tcgacccgtc catcatcggg ccgaccggca agccgctcgg
     1441 gctcgaggtg tggatggcga acaccttctc ccccgtcggc atcgccccga accaggtgac
     1501 ggagcccgcg cagcaggtcc agcagagcaa cgtcccggcg tggtcggcct acggcgcgag
     1561 cgccgcggct gccgctgcca cgcctgcggc cacgccgacc gacggcatcc cgacgaagcg
     1621 gcccgagaag ccctccatgt cgacgatggc gggcctcggc ggccaggtgc cggccggtgg
     1681 tgcgggcgcc acgctcaagg cgaagcccga cccgaagatg gtcctcgagg ccctgctcgg
     1741 ctcgctgcgt gaccagtggc cgcccgacca gcttgacctc gtcgcgcagg gcgactggac
     1801 cttcgaccc
//
LOCUS       DATDDI010000223         1832 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_25388, whole genome shotgun sequence.
ACCESSION   DATDDI010000223 DATDDI010000000
VERSION     DATDDI010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25388"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..538
                     /locus_tag="VIU37_03175"
     CDS             <1..538
                     /locus_tag="VIU37_03175"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY6012973.1"
                     /translation="AGIARTPAEARRTGYATAVWPGRLELIRADGRDVLLDGAHNPAG
                     AAALATALDDLRPFLADGPITLVTASMADKDVDGVIAALAHATALADATIVCTSVDLA
                     RAMDAATLGTRWRRHRPTSAILIEPDPIAAVDRAIARREAGNGPIGVAGSLYLVGAAR
                     GHRVDDPDTRDPSPAEDA"
     gene            535..1437
                     /gene="folP"
                     /locus_tag="VIU37_03180"
     CDS             535..1437
                     /gene="folP"
                     /locus_tag="VIU37_03180"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY6012974.1"
                     /translation="MTRQPGTAVPASLVPTRIGPATFAWGERTFVMGIVNVTPDSFSG
                     DGLLSVGGDPVATAVALGRGMAADGADLLDVGGESTRPGHVAVTADEERARVVPVIAA
                     LRAALPGMPLSVDTTKRQVAEADLDAGANLLNDVWAVGADDSMARLAAERGVPLVVMH
                     NRGEPRYGDLIAEVVADLRAALDRAERLGVPAGRLIVDPGFGFGKTPEQNLALVRNLD
                     ALQALGRPIMLGTSRKSTLGRVLDLPVEDRLEATLATTALGIAAGADIVRVHDVRANV
                     RAARISDAIVRANWRPDAAQGGPS"
     gene            1452..1814
                     /gene="folB"
                     /locus_tag="VIU37_03185"
     CDS             1452..1814
                     /gene="folB"
                     /locus_tag="VIU37_03185"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEY6012975.1"
                     /translation="MANMRFQGRHGYYDHELLTPQPFEVDVEIVLNLQPAAIDDDLSK
                     SVDYGRVYDAVRQIVESTSFRLLEALAEAISHELLADFEATEVGVRVRKPRVQLSGPL
                     DYAGVEIWRRRSAGDRRG"
BASE COUNT          252 a          682 c          656 g          242 t
ORIGIN      
        1 ggccgggatc gcccgcacgc cggccgaggc acgacgaacc ggctacgcaa ccgccgtctg
       61 gccgggccgc ctggagctca tccgcgccga cgggcgcgac gtgctgctcg acggcgccca
      121 caaccccgcc ggcgccgccg ccctggcgac cgccctcgac gacctccggc cgttcctggc
      181 cgacggtccc atcaccctcg tgaccgcgtc gatggccgac aaggacgtcg acggcgtcat
      241 cgccgccctg gcccacgcaa ccgccctggc cgatgccacg atcgtgtgca cgagcgtcga
      301 tctggcgcgt gccatggacg cggcgacgct gggcacccgt tggcgacgac atcggcccac
      361 gtccgccatc ctcatcgagc cggatccgat cgcggccgtg gaccgggcca tcgcgcgccg
      421 ggaggcggga aacgggccga tcggggtcgc gggttcgctc tatcttgtcg gagccgcgcg
      481 cgggcaccgg gtcgacgacc cggacacgcg cgatcccagc ccagccgagg acgcgtgacc
      541 agacagcccg gaaccgccgt tcccgcgagc ctcgtgccga cgcggatcgg accggccacg
      601 ttcgcctggg gcgagcggac gttcgtgatg ggcatcgtca acgtgacgcc cgattcgttt
      661 tccggcgacg ggctcctctc ggtcggaggc gatccggtcg cgacggccgt ggccctcgga
      721 cgcgggatgg ccgcagacgg cgccgacctg ctcgacgtcg gcggcgaatc cacgcggcct
      781 gggcacgtcg cggtcaccgc cgacgaggag cgcgcccggg tcgtgccggt gatcgccgcg
      841 ctgcgcgccg ccctgccggg gatgccgctg agcgtggaca ccaccaagcg gcaggtggcc
      901 gaggccgacc tcgatgccgg cgccaacctg ctcaacgacg tgtgggccgt cggcgcggac
      961 gattcgatgg cgcggctcgc cgcggaacgg ggggtcccgc tggtcgtcat gcacaaccgg
     1021 ggggagccgc gctacggcga cctgatcgcg gaggtcgtcg cggatctccg ggcggcgctg
     1081 gatcgggcgg agcggctcgg cgtccccgcc ggccggctga tcgtcgatcc ggggttcggc
     1141 ttcggcaaga cgccggagca gaacctggcg ctcgtgcgca acctcgacgc cttgcaggcc
     1201 ctgggccgcc cgatcatgct cggcacgagc cgcaagtcca cgctcggccg ggtgctggac
     1261 ctgccggtcg aggaccggct cgaggccacg ttggccacca ccgcgctcgg catcgccgcc
     1321 ggcgccgaca tcgtccgcgt tcacgacgtt cgggccaacg ttcgcgcggc ccggatcagc
     1381 gacgccatcg ttcgcgcgaa ctggcggccc gatgccgccc aaggaggccc gagctgagcg
     1441 atcgaatcgt cctggccaac atgcggttcc agggccgcca cggctactac gaccacgagc
     1501 tgctcacgcc ccagccgttc gaggtcgacg tcgagatcgt gctcaacctt cagcccgcgg
     1561 ccatcgacga cgacctgtcg aaatcggtcg actatgggcg cgtctacgac gccgttcgcc
     1621 agatcgtcga gtcgacctcg ttccggctgc tcgaggcgct ggcggaggcg atcagccatg
     1681 agctcctggc cgatttcgag gcgaccgagg tcggcgtccg cgtccggaag ccccgggtgc
     1741 agctgagcgg accgctcgat tacgccggtg tcgagatctg gcgacgccga tcggccggag
     1801 accgccgcgg ctgacccggc ggcgggctag ct
//
LOCUS       DATDDI010000224         2298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_504073, whole genome shotgun sequence.
ACCESSION   DATDDI010000224 DATDDI010000000
VERSION     DATDDI010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504073"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..2123
                     /gene="flhA"
                     /locus_tag="VIU37_03190"
     CDS             36..2123
                     /gene="flhA"
                     /locus_tag="VIU37_03190"
                     /inference="COORDINATES: protein motif:HMM:TIGR01398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEY6012976.1"
                     /translation="MTTRIAGPVGATAGAPGLRRADAVLAAAVVGIVAMMIIPLPPVV
                     LDILIVLNITFSLTILLLTLNVREPLEFSAFPPLLLIATLFRLGLNVSASRLVLLEAH
                     AGDVINAFGNVVVGGNTVVGIVVFLILVVIQYVVITNGAGRVSEVAARFTLDAMPGKQ
                     MSIDADLNAGLITPDEARARRRAIEGEADFYGSMDGASKFVKGDAIAAMVVIVVNIVG
                     GLTIGVLQKGFDIGQALQTYTVLTVGDGLVNEISALLVSVATGILVTRSASQDGLGSD
                     LSGQLLSRPRLFTVAGAILFVVGLVPGFPLMIFVTAGTVVSGGGWWLARRATALAAAQ
                     PLLPEPPAVAALTAGTEAPLDALRVEAMELQVGYALVGLVEGAGGGGLVERIGLIRRQ
                     IAAELGLIAPTVRIRDDLVLEPDEYVISLRGSEIARGRVDAARLLCLDPAGGELALDG
                     TPATEPVFGLPALWISLADRERAEALGYTVVDAASVLATHLAETIRRYAGEILGRHET
                     NQLLDAFKVDHAGLLDELVPNLVTVGDIQRVLRALLRERVPIRDLPTICQAIADGART
                     TKEPLFLAEAARHALARSISMRHRAPDGSIHAVAIAPALDSRLGKAVTVQPGYVGFDL
                     AGPDSRSLLEAIDRAMRSLAGDGRPQVLLCSTRIRLALRGLTERQFPQVEVLSYEEIL
                     PSIPVQVHAQVEV"
BASE COUNT          281 a          853 c          804 g          360 t
ORIGIN      
        1 gcccgcttcg atcgccgccg atcggggatc gaccgatgac gacgcgcatt gccggaccgg
       61 tcggcgcgac cgcgggcgcg cccggtctcc ggcgcgccga cgcggtcctc gcggcggcgg
      121 tcgtggggat cgtcgcgatg atgatcatcc cgctgccgcc ggtcgtcctg gacatcctca
      181 tcgtcctgaa catcacgttc agcctgacga tcctgctgct caccctcaac gtgcgggagc
      241 cgctcgaatt cagcgccttt ccgccgctgc tgctgatcgc caccctgttc cggctcggcc
      301 tcaacgtgtc cgcctcccgg ctggtcctgc tcgaagccca cgcgggcgac gtgatcaacg
      361 ccttcggcaa cgtggtcgtc ggcggcaaca ccgtcgtcgg gatcgtggtc ttcctgatcc
      421 tggtcgtcat ccagtacgtg gtcatcacca acggcgccgg ccgggtcagc gaggtcgcgg
      481 cccggttcac gctcgacgcg atgcccggca agcagatgag catcgatgcc gacctcaacg
      541 ccgggctgat cactcccgac gaggcgcgtg cccggcgccg cgcgatcgag ggcgaggccg
      601 acttctacgg ctcgatggac ggcgccagca agttcgtcaa gggcgacgcc atcgcggcga
      661 tggtcgtgat cgtcgtcaac atcgtcggcg gcctgacgat cggcgtcctc cagaagggtt
      721 tcgacatcgg ccaggcgctc cagacataca cggtcctgac cgtcggcgac gggctggtca
      781 acgagatcag cgccctgctc gtctcggtcg cgaccggcat cctcgtgacg cggagcgcgt
      841 cgcaggacgg cctcggcagc gacctgtccg gccagctcct gagccggcct cgcctgttca
      901 ccgtggccgg cgcgatcctg ttcgtcgtcg ggctcgtccc gggcttcccg ctcatgatct
      961 tcgtgacggc cggcaccgtg gtgtccggtg gcgggtggtg gctggcgcga cgggccaccg
     1021 cgctcgcggc ggcccagccc ctcctgccgg agccgccggc cgtggcggcg ctcaccgccg
     1081 ggaccgaggc accgctcgac gcgctgcggg tcgaggcgat ggagctccag gtggggtacg
     1141 cgctcgtcgg gctggtcgag ggggccggtg gcggcgggct ggtggagcgc atcggcctga
     1201 tccgccgcca gatcgcggcg gagctggggc tcatcgcgcc gaccgtccgg atccgcgacg
     1261 acctggtcct cgagcccgac gagtacgtga tcagcctgcg cgggtcggag atcgcccgcg
     1321 gccgggtcga cgccgcgcgg ctgctctgcc tcgatccggc gggtggcgag ctggcgctcg
     1381 acgggacgcc cgccacggaa cccgtcttcg ggctgcctgc gctgtggatc agcctggccg
     1441 accgcgagcg cgccgaggcc ctcgggtaca cggtcgtcga cgccgcgtcg gtcctcgcca
     1501 cgcacctggc cgagacgatc cggcggtacg ccggcgagat cctcgggcgg cacgagacca
     1561 accagctgct cgacgccttc aaggtcgatc acgccggcct gctcgacgag ctcgtcccga
     1621 acctggtgac ggtcggcgac atccagcgcg tgctccgggc gctgctccgc gagcgcgtcc
     1681 cgatccgcga cctgccgacg atctgccagg cgatcgccga cggcgcgcgc acgacgaagg
     1741 agccgctgtt cctggccgag gccgcccggc acgccctcgc ccgctcgatc tcgatgcgcc
     1801 atcgcgcgcc ggacggctcc atccatgccg tggccatcgc cccggcgctg gacagccggc
     1861 ttggcaaggc cgtgaccgtc cagcccggct acgtcgggtt cgacctggcc ggccccgatt
     1921 cccgttcgct cctcgaggcc atcgaccgcg ccatgcgatc gctcgccggc gacggacggc
     1981 cccaggtgct gctctgcagc acgcggatcc ggctcgcgct gcgcgggctg accgagcgcc
     2041 agttcccgca ggtcgaggtc ctctcgtacg aggagatcct gcccagcatc ccggtccagg
     2101 tccatgccca ggtggaggtc tagccaatgg aactgctcgt cgcgacgtgg accttgcggc
     2161 tcgccctggt gggtgccgtg gcggtcgccg cggtctccct gtcggccggc gccgggttga
     2221 tcgacgcggt cgatcgggcg gtcctcgccg ccttcgcgct gaccttcctg gggcgccagc
     2281 tcatcggctg gctcgaga
//
LOCUS       DATDDI010000225         2555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_587297, whole genome shotgun sequence.
ACCESSION   DATDDI010000225 DATDDI010000000
VERSION     DATDDI010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587297"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            387..716
                     /locus_tag="VIU37_03195"
     CDS             387..716
                     /locus_tag="VIU37_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012977.1"
                     /translation="MTAVSGSRLAAQRDRRTGLLAAVRADRRSLVTRLGHERTVAVAV
                     AGILLAASAISASATGPAPATGGTNGPGTDVRIAVGGASGYGHGGTINEDYQPTVDTF
                     SAQAAGT"
     gene            861..1697
                     /locus_tag="VIU37_03200"
     CDS             861..1697
                     /locus_tag="VIU37_03200"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY6012978.1"
                     /translation="MLKPVAVNTTVADGRNLVRTYKVKSGDTLTGIASKFGISMMTIW
                     WANDLQSKDALHVGQELSIPPVTGLVVTVTAADTLDSLAQRYDVDANDILVENKLSDP
                     NLVVGQVLVIPGAAGKAIPTPKPVSQPTSHPSSGGGIISRGTSRPPTTYTGGHFLWPV
                     VGGGNYISQYFHYGHYAIDIAADYGSEVRAAGAGTVVFAGWKGNGGGYQVWISHGSNL
                     YTTYNHMSAISVGYGQSVSGGQQVGRVGQSGDATGPHLHFEVWRGPVWSGGSRVNPLA
                     YL"
     gene            1758..>2555
                     /gene="obgE"
                     /locus_tag="VIU37_03205"
     CDS             1758..>2555
                     /gene="obgE"
                     /locus_tag="VIU37_03205"
                     /inference="COORDINATES: protein motif:HMM:NF008956.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEY6012979.1"
                     /translation="MFLDRVKIWVHAGDGGDGAATFRQEAHVPRGGPDGGDGGRGGSV
                     YLRVDAGQTTLRDFTHRHHYKATPGGRGTRARRHGSDGDDLVLDVPPGTAVYDDATGE
                     LLADLVAVGQVALVGRGGRGGLGNTHFKSSTHQAPKHAQKGEPGEERWLRLELRLIAD
                     VGLVGLPNAGKSTLLAAVTAATPKIADYPFTTLEPNLGVMDLGDEDERRPTIADVPGL
                     IEGASSGAGLGHAFLRHVERTRILVHVVDGSSRDPEWDHDVIRSELEA"
BASE COUNT          376 a          939 c          902 g          338 t
ORIGIN      
        1 ctgaccctgt cgtcagcggg tagcggcggt cggccgcccg ccgggcggcg agcgtcgggg
       61 gccatttggc ccttggcgcg attgtcacgc gttgtggtac ggttcccggc gatgtcgtaa
      121 gcccgttgtc acacgggcgg cgtccgcgta gcagagaccc cagctctata ccgcgacccc
      181 ggatggtctc ccgagaccct tcccccaggt gacccccgcg cgctctgagg ccatccacac
      241 gcaaggagac catattgctg aacgcatcgg tcggcgtgca gcgcgtcctc ggacgactgc
      301 gacgcccccc gagcaaccga gcctcgagcg cttcgacctt caaggttcgg agcctcgacg
      361 cggcccgacg cacccgccac gacgtcatga cggcggtctc gggctccagg ctcgccgctc
      421 agcgcgatcg ccgaaccggc ctgctcgccg cggttcgagc tgatcgccgt tccctcgtca
      481 cgcgcctcgg ccacgagcgg accgttgcgg tcgcggtggc cgggatcctc ctggcggcgt
      541 cggcgatcag tgcttcggcc accggcccgg cgccggccac cggcgggacg aacgggcccg
      601 gcacggacgt ccggatcgcc gtcggcggcg caagcggcta cggccacggc ggcacgatca
      661 acgaggacta ccagccgacc gtcgacacgt tctcggccca ggcggccggc acttagcccg
      721 cggcagatcc cgcgacggcc ggcgtcgacc aggccggcgg cgtcgaccag gccggcggcg
      781 tcgatcaggg aaccggcacc ccgctcgcgg ccgggagcgc ctccgggtcg gtcgaggggc
      841 cgttcctcga ggacggcacg ctgctcaagc cggtcgccgt caacaccacc gtcgccgacg
      901 gacggaacct cgtccggacc tacaaggtca agtccggcga cacgctgacc gggatcgcct
      961 ccaagttcgg catctcgatg atgacgatct ggtgggccaa cgacctgcag tccaaggacg
     1021 ccctgcacgt cggccaggag ctgtccatcc cgcccgtcac gggcctcgtg gtgaccgtca
     1081 ccgccgccga cacgctcgac agcctggccc agcgctacga cgtcgacgcg aacgacatcc
     1141 tggtcgagaa caagctgtcc gacccgaacc tcgtggtcgg gcaggtgctc gtcatcccgg
     1201 gcgcggccgg caaggcgatc ccgacgccca agccggtctc gcagccgacg agccacccct
     1261 cctccggtgg cgggatcatc agccgcggca cctcgcgtcc gccgacgacc tacaccggcg
     1321 gccatttcct ctggccggtc gtgggcggcg gcaactacat cagccagtac ttccactacg
     1381 gccactacgc gatcgacatc gcggcggact acggctccga ggtccgggcg gcgggcgccg
     1441 ggacggtggt cttcgcgggc tggaagggga acggcggcgg ctaccaggtc tggatctccc
     1501 acggctcgaa cctgtacacg acctacaacc acatgtcggc gatctcggtc ggctacggcc
     1561 agtcggtatc cggcggccag caggtcggcc gggtcggaca gtcgggcgac gccaccggtc
     1621 cgcacctgca cttcgaggtg tggcgcggcc ccgtctggag cggcggttcc cgggtcaacc
     1681 cgctcgcgta tctgtagtcc gcggcgggac gcccgccatc ggcgggctgg cgagacgacc
     1741 gtgcgagaat ggggccgatg ttcctcgacc gcgtgaagat ctgggtccac gccggcgacg
     1801 gtggcgatgg agccgcgacc ttccgccagg aggcgcacgt cccgcgcggt ggccccgacg
     1861 ggggcgatgg cgggcgcggc ggctcggtct acctgcgggt cgacgccgga cagacgacgc
     1921 tgcgcgactt cacgcaccgc caccactaca aggcgacgcc gggcggtcgg ggcacccggg
     1981 ctcggcggca cggcagtgac ggcgacgacc tggtcctcga cgtgccgccc gggaccgcgg
     2041 tctacgacga tgcgaccggc gagctgctcg cggacctggt cgcggtcggc caggtcgccc
     2101 tcgtgggtcg cggcggccgc ggcggtctcg gcaacaccca tttcaagtca tcgacccacc
     2161 aggcccccaa gcacgcccag aagggcgagc cgggcgagga acgctggctc cggctggagc
     2221 tgcggctgat cgcggacgtc gggctggtcg ggttgccgaa cgccggcaag tcgacgctgc
     2281 tggcggcggt caccgccgcc acgccgaaga tcgcggacta cccgttcacg acgctcgagc
     2341 cgaatctcgg cgtcatggac ctcggggacg aggacgagcg gcggcccacg atcgccgacg
     2401 ttcccgggct gatcgagggc gcgagcagcg gagcggggct gggccacgcc ttcctccgcc
     2461 acgtcgagcg gacccggatc ctggtccacg tcgtcgacgg atcgtcgcgc gaccccgagt
     2521 gggatcacga cgtgatccgg agcgagctgg aggcg
//
LOCUS       DATDDI010000226         2316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_87771, whole genome shotgun sequence.
ACCESSION   DATDDI010000226 DATDDI010000000
VERSION     DATDDI010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2316
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87771"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1610)
                     /locus_tag="VIU37_03210"
     CDS             complement(<1..1610)
                     /locus_tag="VIU37_03210"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY6012980.1"
                     /translation="MSQIDRRTVLKGAAAGAVAAAGATVLPALDPPAVRAGRDYDVAP
                     SLPVDRVVRTTCSPNCTGSCGQLAFVRDGVVVKVQQAADYPDGAYNPRGCMKGLAYVN
                     QIYGADRILTPLIRTGERGSGEFRSAAWEEVLDRIASELKRIGETWGWDSIHVFGQVP
                     GSGYVQKGANYRACALLGMTHGTSFDFNGDLPMAMPITFGVQNAEHEAKDWANSRFLL
                     LLGANPVETRIPDVHFIFDALERGARLVVVDPSFSPTASKADTHLRIRPGTDAALGLA
                     MCRQVIEDGTADDVFMRTYTDAPLLVRSDTGLRLREADLVSGGATDRFVVWDEAAERP
                     AIIGTERLGFEAGVVPALEGTRLITLADGAEVAVTPGFALVRAELANWTPEAAAEVTG
                     LDAGLIVKVARAYAGARPAAILMGGGSNHWYHGDLTGRAFALLAALTGNIGRSGGGFS
                     VYVGQYKVRVDTSPWWSPGGTKAHVVPSVYFVRGKTDTMHPDVPYPKNGWHGLVCTFA
                     NMFVQAMDVNRLHQTLAGLDLIVVVEHQT"
     gene            complement(1607..1837)
                     /locus_tag="VIU37_03215"
     CDS             complement(1607..1837)
                     /locus_tag="VIU37_03215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012981.1"
                     /translation="MTMRWTRRRLLAAGLGVPAILVARRGADALGDVVTAAIRGARPA
                     ADGTSATRCAQCGSPGHTMLDPGCPLAPRVFA"
     gene            complement(1926..>2316)
                     /locus_tag="VIU37_03220"
     CDS             complement(1926..>2316)
                     /locus_tag="VIU37_03220"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6012982.1"
                     /translation="LTTFIGAHVGCAAEDLERVDRMLATYPNWNVDIAARIAELGRQP
                     YRARELIVRWPDRVLFGTDAPPDPAAWQVYARFLETRDESFPYDPDGGPGSQGRWQIH
                     GLGLPVEVLEAVYAGNARRLIFGWANR"
BASE COUNT          337 a          831 c          820 g          328 t
ORIGIN      
        1 gtctggtgct cgacgacgac gatgaggtcc agcccggcga gtgtctggtg cagccgattg
       61 acgtccatgg cctgcacgaa catgttcgcg aacgtgcaca cgaggccgtg ccacccgttc
      121 ttcgggtacg ggacgtcggg atgcatcgtg tccgtcttgc cgcggacgaa gtagacggac
      181 ggcacgacgt gcgccttcgt cccgcccggg ctccaccacg gcgacgtgtc cacgcgaacc
      241 ttgtactggc cgacgtagac cgagaagccg ccgcccgagc ggccgatgtt cccggtgagc
      301 gccgccagca gcgcgaaggc ccggccggtc aggtcgccgt ggtaccagtg gttgctaccg
      361 ccgcccatca ggatggcggc cggcctggcc cccgcatagg cccgtgccac cttcacgatg
      421 agacccgcgt cgaggcccgt gacctccgcg gcggcttcgg gcgtccagtt cgccagctcc
      481 gcccggacca gcgcgaaacc cggcgtgacg gcgacctcgg cgccgtccgc gagggtgatg
      541 agccgggtcc cctccagggc cggcacgacg cccgcctcga agccgaggcg ttccgtcccg
      601 atgatcgccg gacgctccgc tgcctcgtcc cagacgacga accgatcggt ggcgccgccg
      661 gacacgaggt ccgcctcccg aagccgaaga cccgtgtcgg accgcacgag caggggggca
      721 tccgtatacg tgcgcatgaa aacgtcgtcg gcggtcccgt cctcgatgac ctggcgacac
      781 atcgccaggc cgagcgccgc gtcggtcccg ggccggatgc gcaggtgggt gtccgccttc
      841 gacgctgtgg gcgagaagct ggggtccacg accaccagcc gggcgccccg ctcgagggcg
      901 tcgaagatga agtggacgtc cgggatccgg gtttcgaccg gattggcgcc gagcaggagc
      961 aggaaccggc tgttggccca gtccttcgcc tcgtgttctg cgttctggac gccgaacgtg
     1021 atcggcatcg ccatcggcag gtcgccgttg aagtcgaagc tggtgccgtg ggtcatcccg
     1081 aggagggcgc aggcgcggta attggcgccc ttctgcacgt acccggaacc cggcacctgg
     1141 ccaaagacgt ggatcgagtc ccagccccag gtctcgccga tccgcttgag ctcgctcgcg
     1201 atgcgatcga gcacctcctc ccaggccgcc gatcggaact cgccgctgcc ccgctcgccg
     1261 gtccggatga gcggggtcag gattcggtcc gcgccgtaga tctggttgac gtaggcgagg
     1321 cccttcatgc agccgcgcgg gttgtacgcc ccgtcggggt aatcggccgc ctgctggacc
     1381 ttgacgacca cgccatcccg gacgaacgcg agctgcccgc acgatcccgt gcagttcggc
     1441 gagcacgtcg tgcgcacgac ccggtcgacc ggcaggctcg gcgcgacgtc gtagtcgcga
     1501 ccggcacgaa cggccggcgg atccagggcg gggaggacgg tggcacccgc cgcggccacc
     1561 gcgccggcgg ccgcgccctt gaggacggtt cgacggtcga tctggctcac gcgaagaccc
     1621 tcggcgccag cggacagccg gggtcgagca tggtgtgccc gggcgagccg cactgggcgc
     1681 atcgggtcgc ggaggtgccg tccgccgccg gtcgagcccc gcggatcgcc gccgtcacga
     1741 cgtcgcccag ggcgtcggcg ccgcgtcgcg cgacgaggat cgcaggcacc cccaggcctg
     1801 cggccagcag ccgtcgacgg gtccagcgca tcgtcatgcc tcgtgtcggg tccgtgagga
     1861 acgggcgcaa cgcctcgccg gtgacctagt gtcccgggtg ccccggcggg ggccaagggc
     1921 cgaacctacc gatttgccca cccgaagatg agccgccttg cgttgccggc gtagaccgcc
     1981 tcgagcacct ccaccgggag acccaggccg tggatctgcc aacggccctg actccccggt
     2041 cccccgtcgg ggtcgtacgg gaacgattcg tcacgtgttt cgaggaaccg tgcgtagacc
     2101 tgccacgccg ccggatcggg cggcgcgtcg gtcccgaaca ggacccggtc gggccagcgg
     2161 acgatgagct ccctggcccg gtacggctgg cgcccgagct cggcgatccg ggccgcgatg
     2221 tcgacgttcc agttcgggta cgtggcgagc atccggtcga cgcgctcgag atcctccgcc
     2281 gcacagccga cgtgggcgcc gatgaacgtc gtcagg
//
LOCUS       DATDDI010000227         5132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_379219, whole genome shotgun sequence.
ACCESSION   DATDDI010000227 DATDDI010000000
VERSION     DATDDI010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5132
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379219"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VIU37_03225"
     CDS             complement(<1..761)
                     /locus_tag="VIU37_03225"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6012983.1"
                     /translation="MRTLITNGTIVTADGSYQADVLIDGETIAQIGRDPAGATVTADE
                     TIDATGKYVVPGGIDAHTHMELPFGGTFAKDTFETGSRAAAFGGTTTIIDFAVQAKGQ
                     ALRDGLDTWMAKAEGHTVADYAFHMIMSDVNDATLAEMDVLVAEGVPDFKLFTAYPGV
                     FFSDDGSIFRAMQQTARNGGLIMMHAENGPAIDVVARQLAEAGKTDPYYHGVARYAAF
                     EGEATNRVIRLAEAAGAPVYIVHLSAKEALAEVRAA"
     gene            complement(867..2420)
                     /locus_tag="VIU37_03230"
     CDS             complement(867..2420)
                     /locus_tag="VIU37_03230"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6012984.1"
                     /translation="MSDRRSFAGPGASSAFLAAIVDSAEDAITGQSLDGTVLSWNAAA
                     TRMFGYTAEEMVGNSVDVLVPHDRLPEIARISRTIAAGERLERFETVRVAKSGRRIEV
                     SLTVSPILALDGRVIGASSIARDIGERSRFLVESQRAERLDVASRLARGIARELVDLV
                     TAIQGHASLVLEDLADDPRTRASAEAVRRATEQAAVVAHQLLALSGEQVLAPRAIDLN
                     KTIASSLRLLGDVAGRATTIELELDPLIPDVLVDPDQLDHVLVGLVAASRDRLGPGGR
                     ITLSTRPGTSGAGVPDVVLTVRDNGSAIPLDQLDEIFEPFPGSGRPGDGNLWLATAHG
                     ILNQSGGSIRADTGPDGTTFTVRLPAHAAAPRSVAESAIEPLPRGTEWILVVEDEDGV
                     RDFIERALERLGYHVTAVASGEDALERVRGYFADPIDLLVTDVVLPGMSGPELASTLE
                     ASRPGLPVLYVSGYASDVTAFHGLPGLADHVLAKPFGMDVLARRVRSILEDRARRAQA
                     TTQDSTADA"
     gene            complement(2547..3554)
                     /locus_tag="VIU37_03235"
     CDS             complement(2547..3554)
                     /locus_tag="VIU37_03235"
                     /inference="COORDINATES: protein motif:HMM:TIGR03842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03842 family LLM class F420-dependent
                     oxidoreductase"
                     /protein_id="HEY6012985.1"
                     /translation="MQFGFTLKPDHTLDQTLALTRQAEAAGFDYGWLFDSHVLWREPY
                     VLLTLMAGATTRMRLGTCVTNPATREPTVTASALAVLDELSGGRMDLGIGRGDSARRV
                     LGKPPTTMATLEDAIRVIKDLVEGRTTVYEGTELRLTWTGSWTLPIWVAGYGPMALAM
                     TGRVADGIILQLADPDLIRWFAGQVRDSARAAGRDPAAIRVQAAAAAYVGPRDLGRER
                     TRWFPALVSNHVVDLVNKYPRDQLPANLTGYVRDRSGYDYLHHAEVGSSNAAFVDDDV
                     TDRFCVLGPADEHVEKLRELAAAGVDQFNVYLMNGDEADQLEHYGRDVIPAMRHVVGS
                     V"
     gene            complement(3636..3992)
                     /locus_tag="VIU37_03240"
     CDS             complement(3636..3992)
                     /locus_tag="VIU37_03240"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY6012986.1"
                     /translation="MAIQQGPRQPGTGFLADSSRGLSEYLWRVEQVSHALANGYYVGT
                     INRVGIEAEIGDDDFYGQSYFVDPRGQFVGDVGSAHDEELIVRDLDLDRITEVRNTWQ
                     FFRDRRPDAYGDLVRP"
     gene            3891..>5132
                     /locus_tag="VIU37_03245"
     CDS             3891..>5132
                     /locus_tag="VIU37_03245"
                     /inference="COORDINATES: protein motif:HMM:NF024516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HEY6012987.1"
                     /translation="MGDLLDPPEVLGEAARRVGKETSAWLTRALLDGHSNDASVRLQG
                     DLNDFPFADNRKGLFQVRAHVNDGKLDYAPGWPRLDNIDADFLMQGKQITVSGGSATT
                     VGAHVKRVSVTLPDFTSHDLLLQIRGEQEGDIAPCLDFIQQSPVRGYLSGFTDETTAH
                     GKGHLALQLDIPLAGKLPLKVNGSYHFADHEVELAPYLPTLRKVNGDLHFSEAGVSAQ
                     NLVAQVLGGPATLTLDTAASGEIHAHASGATNFDALRKLVALPLAHRLRGVTPWTLDV
                     TAQNQQSHIVFNSTLQGLQSDLPAPFNKRAGDSSVLHFEQHSQDATHETLTLQYDKWL
                     NASLQRAPDADGQWRVQRGKVLLGGTARNGDKGRERDGVWVQGTLPLLVVEGWQGILG
                     AGPDAGDSGLQLAGADVQIGKL"
BASE COUNT          779 a         1722 c         1871 g          760 t
ORIGIN      
        1 gccgcgcgga cctcggccag ggcctccttc gcggagaggt ggacgatgta gaccggcgca
       61 cccgcggcct cggccagccg gatcacgcga ttggtcgcct cgccctcgaa cgcggcgtag
      121 cgcgccacgc cgtggtagta cggatcggtc ttgccggcct cggccagctg ccgggccacg
      181 acgtcgatcg ccggtccgtt ctcggcgtgc atcatgatca gcccgccgtt gcgggcggtc
      241 tgctgcatcg cccggaagat cgagccatcg tcgctgaaga agacgcccgg gtaggcggtg
      301 aacagcttga agtccggcac gccctcggcg accaggacgt ccatctcggc cagcgtcgcg
      361 tcgttgacgt cgctcatgat catgtggaac gcgtagtcgg cgacggtgtg gccctcggcc
      421 ttggccatcc aggtgtcgag cccgtcgcga agggcctggc ccttggcctg caccgcgaag
      481 tcgatgatcg tcgtcgtgcc gccgaaggcc gcggcgcgcg acccggtctc gaaggtgtcc
      541 ttggcgaacg tcccgccgaa cggcagctcc atgtgggtgt gcgcgtcgat cccgcccggg
      601 accacgtact tgccggtcgc gtcgatcgtc tcgtccgccg tcaccgtcgc gccggccggg
      661 tcgcgcccga tctgggcgat ggtctcgccg tcgatcagga cgtcggcctg gtacgagccg
      721 tcggccgtga cgatcgtgcc gttggtgatg agcgtgcgca tccgttcctc ctcggcgagg
      781 cggccagaac ccaggaccgc attgtggccg atcgcgtccg cagacgggcg cccgcgggtg
      841 gcaccctgca ggacgagcgc cggcgatcag gcgtcggccg tcgaatcctg cgtggtcgcc
      901 tgcgcccgcc gggcgcgatc ttcgaggatg ctccggacgc gccgggcaag gacgtccatc
      961 ccgaacggct tggccaggac gtggtcggcc aggccgggaa ggccgtggaa cgcggtcacg
     1021 tctgacgcgt accccgagac gtacaggacc ggcagccccg gccgggacgc ctcgagcgtg
     1081 gaggccagct cgggcccgct catgccgggc aggaccacgt cggtgaccag caggtcgatc
     1141 gggtcggcga agtagccccg gacgcgctcg agggcgtcct cgccgctcgc gacggcggtc
     1201 acgtggtagc cgagccgctc gagcgcccgt tcgatgaagt cgcgcacgcc gtcctcgtcc
     1261 tcgaccacga ggatccactc ggtgccgcgc ggcagcggtt cgatcgccga ttcggcgacg
     1321 gagcgtgggg cggccgcgtg cgccgggagg cgaacggtga acgtcgtgcc gtccgggccc
     1381 gtgtcggcgc ggatcgagcc gcccgattgg ttgaggatgc cgtgcgccgt ggccagccag
     1441 aggttcccgt cgcccggccg gccgctgccc gggaagggct cgaagatctc gtcgagctgg
     1501 tcgagcggga tggcgctccc gttgtcgcgg acggtcagga ccacgtccgg cacgccggcg
     1561 cccgaggtgc ccgggcgggt cgacagggtg atccgcccgc ccggcccgag ccggtcgcgc
     1621 gacgccgcca ccagtccgac caggacgtgg tcgagctggt cggggtcgac caggacgtcg
     1681 gggatgagcg ggtcgagctc gagctcgatg gtcgtcgccc gcccggcgac gtcgccgagg
     1741 aggcggagcg agctggcgat cgtcttgttg agatcgatgg cgcgcggggc cagcacctgc
     1801 tcgccgctca gggcgagcag ctggtgcgcg accacggccg cctgctcggt cgcgcgccgg
     1861 acggcctccg ccgatgctcg ggtgcgcgga tcgtcggcca ggtcctcgag cacgagcgac
     1921 gcgtgcccct ggatggcggt caccaggtcg accagctcgc gggcgatccc gcgggccagc
     1981 cggctggcca cgtcgagccg ttcggcgcgc tggctctcga cgaggaagcg ggaccgttcg
     2041 ccgatgtcgc gggcgatcga cgatgcgccg atgacccgtc cgtcgagggc gaggatcggc
     2101 gagacggtca gcgagacctc gatccggcgg ccgctcttgg cgacgcggac ggtctcgaag
     2161 cgctcgagtc gttcgccggc cgcgatcgtc cgggagatgc gcgcgatctc cggcaggcgg
     2221 tcgtgcggca cgaggacgtc gaccgagttg ccgaccatct cctcggcggt gtagccgaac
     2281 atgcgggtgg ccgcggcgtt ccacgacagg accgtgccgt cgaggctctg gccggtgatc
     2341 gcgtcctcgg ccgaatcgac gatggccgcg aggaatgcgg aggatgcgcc ggggccggcg
     2401 aacgatcgtc ggtcggacat ccgtacctcc tcgtcgcgcg tccacgcgga tgggacgatc
     2461 cgagcctcgc gtccacgaga gccgggctca cacccaatct acaagcggag gtcaattgcc
     2521 cccgacgata cccgtccgca ccggagtcag actgacccca cgacgtggcg catggccggg
     2581 atcacgtcac ggccgtagtg ctccagctgg tcggcttcgt cgccgttcat gaggtagacg
     2641 ttgaactggt cgacgccggc cgcggcgagc tcgcggagct tctcgacgtg ctcgtccgcg
     2701 gggccgagga cgcagaaccg gtcggtcacg tcgtcgtcca cgaacgcggc gttggatgag
     2761 ccgacctcgg cgtggtggag gtagtcgtag cccgaccggt cgcggacgta accggtcagg
     2821 ttggccggca gctggtcgcg tgggtacttg ttgaccaggt cgacgacgtg gttcgagacc
     2881 agtgccggga accagcgggt ccgttcgcgg cccaggtcgc ggggcccgac gtatgccgcg
     2941 gccgccgcct gcacccggat cgccgccgga tcccggccgg ccgcgcgcgc cgaatcgcgg
     3001 acctggccgg cgaaccagcg gatgaggtcc ggatccgcga gctgcaggat gatcccgtcg
     3061 gccactcgtc cggtcatcgc cagcgccatc ggtccgtagc ccgcgaccca gatcggaagc
     3121 gtccaggagc cggtccaggt cagtcggagc tcggtgccct cgtagacggt ggttcgtccc
     3181 tcgacgaggt ccttgatcac ccgaatggcg tcctcgagcg tcgccatcgt ggtcggcggc
     3241 ttgccgagga cgcggcgggc cgagtcgccg cgaccgatgc cgaggtccat ccggccgccc
     3301 gacagctcgt cgagcacggc cagggcggag gccgtcacgg tcggctcgcg ggtcgccggg
     3361 ttcgtcacgc aggtgccgag ccgcatccgc gtcgtggcgc ctgccatgag cgtgagcagc
     3421 acgtacggct cccgccacag gacgtgcgaa tcgaacagcc agccgtagtc gaagccagcc
     3481 gcctcggcct gccgggtgag cgccagcgtc tggtcgagcg tgtgatcggg cttgagggtg
     3541 aagccgaact gcatggccgg ggcctcccgc ctcgaaacga gacggctcgg ccgtcctcct
     3601 ccagacggcc gagccggatg ggatggtagc gcttcctagg gccgaacgag gtctccgtac
     3661 gcatcgggtc gacggtcgcg gaagaattgc caggtgttgc gcacctcggt gatccggtcg
     3721 agatcgaggt cgcgcacgat cagctcctcg tcgtgggcgg agccgacgtc ccccacgaac
     3781 tggccgcgcg ggtcgacgaa gtagctctgg ccgtagaagt cgtcgtcgcc gatctcggcc
     3841 tcgatgccga cccggttgat cgtgccgacg tagtagccgt tggcgagggc gtgggagacc
     3901 tgctcgaccc gccagaggta ctcggagagg ccgcgcgacg agtcggcaag gaaaccagtg
     3961 cctggctgac gcgggccctg ctggatggcc acagcaacga cgccagcgtg cgtctgcagg
     4021 gtgacctcaa cgacttcccg tttgcagata accgcaaggg cctgttccag gtgcgtgcac
     4081 atgtgaacga cggcaaactg gattacgcac cggggtggcc gcgcctggac aatatcgatg
     4141 ccgatttcct gatgcagggc aagcagatca ccgtcagtgg cggcagcgcc accaccgtgg
     4201 gggctcatgt gaaaagagtc agcgtgaccc tacccgattt cacgagccac gacctcctgc
     4261 tgcagatacg cggcgagcag gaaggcgaca tcgcgccgtg cctggacttc atccagcaaa
     4321 gtccggtgcg cggttacctg tccggcttca ccgatgagac cacggcgcat ggcaaaggac
     4381 acctggcact gcagctcgac attccgctgg caggcaagct gccgctcaag gtgaatggca
     4441 gctatcactt cgccgatcac gaggtggagc tcgcccccta tctgcccacg ctgcgcaagg
     4501 tcaacggcga cctgcacttc agcgaagcgg gcgtgtcggc gcagaacctg gtcgcccagg
     4561 tgctgggcgg gcccgccacg ctgacgctgg acaccgctgc cagcggcgag attcatgcgc
     4621 atgcgagcgg tgccaccaat ttcgatgcgt tgcgcaagct tgtggcgttg ccgctggcgc
     4681 acaggctgcg cggcgtcacg ccgtggacgc tggacgtgac ggcgcagaac cagcagagcc
     4741 atatcgtttt caacagcacc ttgcagggcc tgcaatcgga cctgccggcg ccattcaaca
     4801 agcgcgcagg cgacagcagc gtgctgcatt tcgagcagca tagccaggac gcaacgcacg
     4861 agacgctgac gctgcaatac gacaaatggc taaacgccag cctgcagcgg gcgccggatg
     4921 ccgacggcca gtggcgcgtg cagcgcggca aggtgctgct gggcggcacg gcgcgcaacg
     4981 gggacaaggg acgcgagcgc gatggcgtgt gggtgcaggg cacgctgccg ctgctggtgg
     5041 tggaaggctg gcagggcatt ctgggcgccg ggccggatgc aggcgacagc gggctgcaac
     5101 tggccggggc cgatgtgcag attggcaagc tg
//
LOCUS       DATDDI010000228         1946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_171112, whole genome shotgun sequence.
ACCESSION   DATDDI010000228 DATDDI010000000
VERSION     DATDDI010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171112"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VIU37_03250"
     CDS             complement(<1..323)
                     /locus_tag="VIU37_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012988.1"
                     /translation="MTASTETPHRTVGASVDVGSNSVHLLVAEIAGHRLAPIVDESVF
                     LGLGAAVAERGHLGAAARAELAGTLAGYAESSRQLGARHVTFVGTEPIRRAADAARIV
                     ADVAAA"
     gene            complement(373..1338)
                     /locus_tag="VIU37_03255"
     CDS             complement(373..1338)
                     /locus_tag="VIU37_03255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012989.1"
                     /translation="MAKDRGRSGKRKVGKTALVEAVSDLVGSSRRALGPLSNSAGKEI
                     RKLEKRLDAARATEAKRLRQLAAAQATKGRKQVAKRSKQAGEAAQEVASLAGKLAGRA
                     ASAAGSAAGATGGAARAVGAAAIQAVEAVSPIRTGTPAVAPATPAGPATTRRPPTARK
                     PRTTTRSVGGAAAGGGAAAAKPASPKRGTGRAARPGIAARKTTAATPAPAKAAPTRRG
                     SAAKPAAASTTTAKRAATAKPATARKPATAAKPATTKPATDAKPATTKPATKPGPATK
                     PATGARRTSTPGTPKPATSRRAGTTRPTARRSPRPSDGGSGGTPS"
     gene            1487..>1946
                     /locus_tag="VIU37_03260"
     CDS             1487..>1946
                     /locus_tag="VIU37_03260"
                     /inference="COORDINATES: protein motif:HMM:NF019346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6012990.1"
                     /translation="MSAGGVGHRFWKDLRETVGGSLIGAEPALRLLAVAMLANGHALV
                     EDVPGTGKTTIARAFAQALGLTFARVQGTPDLLPGDVTGSSLYEGGAFRFVPGPIFTN
                     ILLVDEINRATPRTQSALLEAMQERQVSIDGETHRLPGPFLVLATENPIEL"
BASE COUNT          208 a          731 c          723 g          284 t
ORIGIN      
        1 gcggcggcca cgtcggcgac gatccgggcc gcatccgccg cccggcgaat gggctcggtc
       61 ccgacgaacg tgacgtggcg cgcgccgagc tgccgcgagg actccgcata gccggccagc
      121 gtcccggcca gctcggcgcg ggccgcggcg cccaggtgac cccgctcggc caccgcggcg
      181 ccgagcccga ggaagaccga ttcgtcgacg atcggcgcca accggtggcc ggcgatctcg
      241 gccaccagga ggtggaccga gttcgagccc acgtcgaccg acgccccgac ggtgcggtgc
      301 ggcgtctccg tcgaggccgt caccgccgtg gctggttcgg cacggaccgc gatcgcttcg
      361 ttcggcgcgc ggtcaggatg gggtgccgcc gcttcccccg tcggacggac gcggcgacct
      421 ccgcgcggtc ggccgggtcg tgccggcccg gcgcgacgtg gccggcttcg gcgtgcccgg
      481 cgtggaggtg cgccgtgcgc ccgtggccgg cttggtggcg gggccgggct tggtggccgg
      541 cttagtggtg gccggcttcg cgtccgtggc cggcttggtg gtggccggct tcgcggccgt
      601 ggccggcttg cgggctgtgg ccggcttcgc ggtcgcggca cgtttggcgg tggtggtgct
      661 ggcggcagct ggcttcgcgg ccgagccccg tctcgtcggt gccgccttgg ccggggccgg
      721 cgtggcggcc gtcgtcttcc gggccgcgat cccgggccgt gcggcacgac cggtgcctcg
      781 cttcggcgac gccggcttcg ccgcggccgc accgccaccc gccgccgcgc caccgaccga
      841 tcgcgtggtt gtgcgcggct tccgcgccgt cggtggccgt cgggtcgtcg ccggaccggc
      901 gggcgtggcc ggggcgacag ccggcgtccc ggtcctgatc ggcgagaccg cctccaccgc
      961 ctggatcgct gccgcgccca ccgcccgggc cgctccaccg gtggcacctg ccgcggaacc
     1021 ggccgccgat gcggcccgac cggcgagctt gccggcgagg gatgcgacct cctgggcggc
     1081 ttccccggcc tgcttcgagc gcttggcgac ctgcttccgg cccttggtgg cctgggcagc
     1141 ggccaactgg cggagccgct tggcctcggt cgcgcgagcg gcatcgagac gcttctcgag
     1201 cttccggatc tccttgccgg cgctgttgga cagcggtccg agcgcccgtc tcgagctccc
     1261 gacgaggtcg ctcaccgcct cgaccagcgc tgtcttgcca accttccgct tcccggatcg
     1321 gccacgatcc ttggccatcg atcgcctcca gtcgaggtgc tcggcgcccc cgtcgcatca
     1381 ggcgagagag cggtcgcgac ggaccgtcgc caggacgcaa gtctgccacg ccccgcaagg
     1441 accgaacgca tcgacatccg catgggccaa tgcctatgct ggctcgatgt cagcgggcgg
     1501 cgtcgggcac cgattctgga aggacctgcg ggagaccgtc ggcggctcgc tcatcggtgc
     1561 cgaaccggcg ctccggctcc tcgccgtcgc catgctcgcc aacggccatg ccctggtcga
     1621 ggatgtgccg ggcaccggga agaccaccat cgcccgcgca ttcgcgcaag ccctcgggct
     1681 gaccttcgcg cgcgtccagg ggacgcccga cctgctgccg ggcgatgtga ccgggagcag
     1741 cctgtacgaa gggggcgcgt tccgcttcgt gcccggcccg atcttcacga acatcctgct
     1801 ggtcgacgag atcaaccggg cgacaccgcg gacgcagtcg gcgctcctcg aagcgatgca
     1861 ggagcgccag gtctcgatcg acggtgagac ccaccgcctg cccggtccgt tcctggtgct
     1921 ggcgaccgag aacccgatcg agctgg
//
LOCUS       DATDDI010000229         1775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_462349, whole genome shotgun sequence.
ACCESSION   DATDDI010000229 DATDDI010000000
VERSION     DATDDI010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462349"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1155)
                     /locus_tag="VIU37_03265"
     CDS             complement(<1..1155)
                     /locus_tag="VIU37_03265"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6012991.1"
                     /translation="MRVALVIAARILRQRVRDRSAIVFAVLTPIGLAMAFSAVIPDFT
                     PTFHTTVAVVDHDGGAAAQALIQGPLHGLESAGIAAIKLVDTEADARYAVSVDDAGAA
                     VVIPAGFSDAVHAGAPTEVRILAGGGATSREVVRATVTSFADAVGAGQLAVQTVSATG
                     GTVDAASLATIQAAVLADHPIVVADATAAHRQASLTTFYGAAMAIMFVFFATQYGALA
                     ILAERRVGTLNRLLAAPISQGSVILGGSIAGLLLGMLAMGILVVATTLLGNADWGPPP
                     LVAILVVAAVIAAVGISTLVATVARTVEQADGLNAIVALCLAAIGGVFIPLSQAPEIL
                     ARLALVTPHAWFLRAVDTLTVPSAGLADILPSLVVLTAMGVVTGGIGLVRA"
     gene            complement(1167..>1775)
                     /locus_tag="VIU37_03270"
     CDS             complement(1167..>1775)
                     /locus_tag="VIU37_03270"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6012992.1"
                     /translation="DLRERIAEVLSVIDLADRADERTERFSGGMKRRLNIGIGLLHRP
                     RLLVLDEPTVGVDPQSRNAILSSVEALSAAGMGILYTTHYMEEAERLCNRVGIIDEGK
                     IIAEGTRRELVALVGGLDTVKLGATGDLAAAARTVRELDGVRDVTTHDAGLELLVVDA
                     RRMLPPILAAVNEDGVSVRSVEVVEPDLEAVFLHLTGKALRD"
BASE COUNT          268 a          646 c          630 g          231 t
ORIGIN      
        1 tgccctgacc agcccgatcc cgccggtgac gacccccatg gcggtcagga cgacgaggct
       61 cggcaggatg tcggccagtc cggcactcgg cacggtgagc gtgtcgacgg cccgcaggaa
      121 ccaggcatgc ggcgtgacca gggcgagccg ggccaggatc tccggtgcct ggctgagcgg
      181 gatgaagacg ccgccgatcg ccgccaggca gagggccacg atcgcgttca gtccgtcggc
      241 ctgctcgacc gtcctggcca ccgtggccac cagggtcgag ataccgaccg cggcgatcac
      301 cgccgccacg accaggatcg cgaccagcgg cggcggtccc caatcggcgt tgcccagcag
      361 ggtggtcgcc acgaccagga ttcccatcgc cagcatcccg agcagcagtc ccgcgatcga
      421 gccgccgagg atcaccgagc cctggctgat cggtgcggcc agcagccggt tcagcgtgcc
      481 gacgcgtcgt tcggcaagga tcgcgagggc cccgtactgg gtggcgaaga agacgaacat
      541 gatcgccatg gccgccccgt agaaggtggt cagcgaggcc tgccggtgcg cggcggtcgc
      601 atcggccacg acgatcggat gatcggccag gacggctgcc tggatcgtcg cgagcgaggc
      661 cgcgtccacc gtgccgccgg tcgcggacac ggtctggacg gcaagctggc cggcaccgac
      721 cgcgtcggca aagctcgtga cggtcgcccg gacgacctcg cgcgacgtgg ccccgccgcc
      781 ggcgaggatg cgcacctcgg tcggggctcc cgcgtggacg gcgtcgctga acccggccgg
      841 gatgacgacc gcggcgccgg cgtcgtcgac gctcaccgcg tagcgggcgt cggcctcggt
      901 gtcaacgagc ttgatggcgg cgatcccggc cgactcgagg ccatgcaacg gaccctggat
      961 cagcgcctgc gcggcggcgc cgccgtcatg gtcgacgacc gcgaccgtcg tgtggaaggt
     1021 cggcgtgaaa tccgggatga ccgccgagaa cgccatggcc agcccgatcg gcgtcaggac
     1081 ggcgaagacg atcgccgatc gatcccgcac ccgctgtcgc aggatccggg cggcgatgac
     1141 gagcgcgacg cgcatgggat tgcgcctcag tcccgcaggg ccttgccggt caggtgcagg
     1201 aagacggcct cgaggtcggg ctcgaccacc tccaccgacc tgacggacac gccgtcctcg
     1261 ttcaccgcgg cgaggatcgg cggcagcatc cggcgagcgt ccacgacgag gagctcgagc
     1321 ccggcgtcat gggtggtcac atccctgacg ccgtccagct cgcgaaccgt ccgggccgcc
     1381 gcggcgaggt ccccggtcgc gccgagcttg accgtgtcga gcccgccgac gagcgccacc
     1441 agctcccgcc gcgtcccctc ggcgatgatc ttgccctcgt cgatgatgcc gacgcggttg
     1501 cacagccgct cggcctcctc catgtagtgc gtcgtgtaca ggatccccat ccccgcggcg
     1561 ctcagcgcct cgacgctcga caggatcgcg ttccggctct gcgggtcgac gccgacggtc
     1621 ggctcgtcga gcaccagcag ccgcggccgg tggagcagac cgatcccgat gttgagccgt
     1681 cgcttcatgc cgcccgagaa ccgctcggtc cgctcgtcgg cgcggtccgc caggtcgatg
     1741 acggacagga cctcggcgat ccgctcccgg aggtc
//
LOCUS       DATDDI010000230         2007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_566454, whole genome shotgun sequence.
ACCESSION   DATDDI010000230 DATDDI010000000
VERSION     DATDDI010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566454"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1080
                     /gene="galE"
                     /locus_tag="VIU37_03275"
     CDS             88..1080
                     /gene="galE"
                     /locus_tag="VIU37_03275"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEY6012993.1"
                     /translation="MRILVTGGAGYVGSVSAEAFLAAGHEVVVLDDLTTGHRAAVPAA
                     ATLHVGTYADAGAVADLLRAERIDAILHCAARSLVGESIRDPSRYFRDNVAGGIALLD
                     AARAGGVERIVFSSTAAVYGTPDSTPITEDAPLRPINPYGESKRAFEAALGWYGRAYG
                     LRSVTLRYFNVAGATATLGEDHEPETHLIPNILRAALGRTELTVFGDDYPTPDGTCIR
                     DYIHVADLADAHRLAIEATAPGDHRTDEPLVCNLGSGGGFSIRQVIAAAETAVGQAIP
                     FAVGARRPGDPPALVAESTRATEVLGWHAARPTLDAMIGSAWAWRQAHPDGYPD"
     gene            complement(1068..>2007)
                     /locus_tag="VIU37_03280"
     CDS             complement(1068..>2007)
                     /locus_tag="VIU37_03280"
                     /inference="COORDINATES: protein motif:HMM:NF023128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6012994.1"
                     /translation="TVSTPAARGRLSGIGTAIGYCGTVFVGLIIFLLHVPVEDRFRLT
                     AFLFAAFAVPIFLFVREPAPRGPRLTARDVVESLGQLRQSIAHARLVPGLGRFLVGRF
                     FYSDAVNTVIVVMSVVAVKALGMSESDANLMLLSLTFVAIGMSFAWGWLCDRYGPKRT
                     LVAVLASWAVGLVLGGAALGLGSAGLPPFLLAGAILGSGLGGVQVADRVLMVRLSPPD
                     RLGEFFGLYGLVGKGSQVVGQLLYGATIFLLLDAAGTGAYQVAVLSLLVTMLIGLWLV
                     WPVRDDWSGSDETGSRPGAEAAGARVAGAPSGGQSG"
BASE COUNT          307 a          778 c          696 g          226 t
ORIGIN      
        1 gccgcagcga tccctcgccg gccgcctgcg agcctggttc gcccggctcg tcgggcgctc
       61 cgcctagcgc gaggctaggc tcgacgcatg cgaatcctcg tcaccggcgg cgccggctac
      121 gtgggctccg tctcggccga ggccttcctc gccgcggggc acgaggtggt cgtgctcgac
      181 gacctcacga ccggccaccg cgcagccgtg ccggccgcgg ccaccctcca cgtcggcacg
      241 tacgccgatg cgggcgccgt cgcggatctc ctccgcgccg agcggatcga cgcgatcctc
      301 cactgcgcgg cccggtcgct ggtcggtgag tcgatccgcg acccgtcgcg ctacttccgc
      361 gacaacgtcg cgggcgggat cgccctgctc gacgcggcgc gcgcgggcgg cgtcgagcgg
      421 atcgtgttct cctcgaccgc cgcggtgtac gggacgccgg actcgacacc gatcaccgag
      481 gacgcgccgc tccggccgat caacccgtac ggcgagagca agcgcgcgtt cgaggccgcc
      541 ctcggctggt acgggcgcgc ctacggactg cgcagcgtga ccctgcgcta cttcaacgtc
      601 gcgggtgcca cggcgacgct gggcgaggat cacgagcccg agacccacct gatcccgaac
      661 atccttcggg cggcgctggg ccggacggag ctgaccgtgt tcggcgacga ctacccgacg
      721 ccggatggga cctgcatccg cgactacatc cacgtcgccg acctggccga tgcgcaccgg
      781 ctcgcgatcg aagcgaccgc gccgggcgac caccggacgg acgagccgct cgtctgcaac
      841 ctcgggagcg gcggcgggtt ctccatccgc caggtcatcg ccgcggccga gaccgcggtc
      901 ggtcaggcga tcccgttcgc cgtcggcgcg cgccggcccg gcgacccgcc cgcgctggtg
      961 gccgaatcga cacgcgccac cgaggtcctc ggctggcacg cggcgcgacc gaccctggat
     1021 gcgatgatcg gttcggcctg ggcgtggcgc caggcgcacc cggacggcta ccccgactga
     1081 ccgcccgacg gcgccccggc cacccgcgcg ccggccgcct cggctcccgg gcgcgacccg
     1141 gtctcgtccg atcccgacca gtcgtcccgg accggccaca ccagccacag cccgatcagc
     1201 atcgtgacga gcaggctgag gaccgcgacc tggtaggcgc cggtccccgc cgcgtcgagc
     1261 agcaggaaga tcgtcgctcc gtagagcagc tggccaacga cctggctgcc cttgccgacc
     1321 agcccgtaca gcccgaagaa ctcgccgagc cggtccggcg gcgacagccg gaccatcagc
     1381 acccggtccg cgacctggac cccgccgagg ccgctgccga ggatcgcccc ggccagcagg
     1441 aacggcggca gcccggcgct gcccagcccg agcgcggcac ccccgaggac cagcccgacc
     1501 gcccaggacg cgaggaccgc caccagggtc cgcttcgggc cgtaccggtc gcacagccag
     1561 ccccaggcga agctcatgcc gatcgccacg aacgtgagtg acagcagcat gagattggcg
     1621 tcggactcgg acatgcccag ggccttcacg gcgacgacgc tcatcacgac gatgaccgtg
     1681 ttgaccgcat ccgagtagaa gaatcgaccc accaggaagc ggccgagccc ggggacaaga
     1741 cgcgcgtggg cgatcgactg gcgcagctgt cccagcgatt ccacgacatc gcgggcggtc
     1801 agccgcggac cccgcggcgc cggttcgcgg acgaacagga agatcgggac cgcgaaggcc
     1861 gcgaacagga acgcggtgag ccggaagcgg tcctcgaccg ggacgtggag caggaagatg
     1921 atcagcccga cgaacacggt cccgcagtag ccgatcgcgg tcccgatccc ggacagccgg
     1981 ccgcgcgcgg ccggcgtgct gacggtc
//
LOCUS       DATDDI010000231         1704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_400149, whole genome shotgun sequence.
ACCESSION   DATDDI010000231 DATDDI010000000
VERSION     DATDDI010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400149"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..683
                     /locus_tag="VIU37_03285"
     CDS             <1..683
                     /locus_tag="VIU37_03285"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEY6012995.1"
                     /translation="GTPGARHASDMLPYSEPEIRRVVRLAFELARGRRRRVTSVDKAN
                     VLATSRLWRTIVEELRPEYPDVEVTHQLVDSCAMLLIKQPAWFDVLVTENLFGDILSD
                     EAGVLAGSLGMLPSASLGERKTPHGTFGLYEPIHGSAPDIAGQDRANPIGTILSAAML
                     LRLSLGRADAAAAVEAAVTATLAAGYRTGDLAGAGERDRLSVVGTTAFADAVVAALVS
                     GAAEGVPA"
     gene            680..>1704
                     /locus_tag="VIU37_03290"
     CDS             680..>1704
                     /locus_tag="VIU37_03290"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012996.1"
                     /translation="MTAPTAGDAPVILYDTTLRDGTQGENITLSLADKLRIARMLDEF
                     GMPFIEGGWPGSNPKDIEFFATARTMRWERARLAAFGSTRHRSNKPADDPNLRELVAA
                     ETPVVTIFGKSWLLHVTEVLGATPAENLDMIADSVGFIADHGREAIYDAEHFFDGYRA
                     DRDYALQTLRAARQAGARTLVLCDTNGGTLTDELTTIVHDVRATLEADPDAPAVTWGI
                     HTHNDAELAVANSLAAVAAGVRHVQATINGYGERAGNANMVSVLANLALKTPHPLVPS
                     GGGRLAGLTDLSRSIAEIANVTPNDYQPYVGRSAFAHKGGVHGAAVAKVERSYQHIDP
                     TSVGNAGR"
BASE COUNT          253 a          646 c          585 g          220 t
ORIGIN      
        1 gcgggacgcc cggcgcgcga cacgcgtcgg acatgctgcc gtactcggag cccgagatcc
       61 ggcgggtcgt ccgactggcg ttcgagctcg cgcgcggccg ccgccggcgg gtgaccagcg
      121 tcgacaaggc gaacgtcctg gccacgtcgc gcctgtggcg cacgatcgtc gaggagctgc
      181 gaccggagta ccccgacgtg gaggtcaccc accagctggt cgattcatgc gcgatgctcc
      241 tgatcaagca gccggcctgg ttcgacgtcc tggtgaccga gaacctgttc ggcgacatcc
      301 tgtccgacga ggcgggcgtc ctcgccggct cgctcgggat gctcccgtcc gcgtcgctcg
      361 gggagcggaa gacgccacac ggcacgttcg ggctgtacga gccgatccac ggctcggcgc
      421 cggacatcgc cggccaggat cgggccaacc cgatcggcac catcctgtcc gcggcgatgc
      481 tgctgcggct gtcgctcggc cgcgcggacg ccgctgccgc ggtcgaggcc gcggtgaccg
      541 ccacgctggc cgccggctac cggacgggcg acctggccgg ggccggggag cgcgatcgcc
      601 taagcgtggt cgggacgacc gccttcgccg acgccgtggt cgccgccctc gtctcgggcg
      661 ccgcggaagg ggttccggca tgaccgcgcc gacggccggc gacgcgccgg tcatcctcta
      721 cgacaccacc cttcgcgacg ggacgcaggg cgagaacatc acgctctcgc tcgccgacaa
      781 gctgcggatc gcgcgcatgc tcgacgagtt cgggatgccg ttcatcgagg gcggctggcc
      841 ggggtccaac ccgaaggaca tcgagttctt cgcgaccgcc aggaccatgc gctgggagcg
      901 ggcgaggctg gccgccttcg ggtccacccg ccatcgctcg aacaagcccg ccgacgaccc
      961 gaacctccgc gagctggtcg ccgccgagac gcccgtggtc acgatcttcg ggaagagctg
     1021 gctgctccac gtcaccgagg tgctgggtgc cacgcccgcc gagaacctcg acatgatcgc
     1081 cgactcggtc gggttcatcg ccgaccacgg tcgcgaggcg atctatgacg ccgagcactt
     1141 cttcgacggc taccgggccg accgcgacta cgccctccag accctgcggg ccgcccgcca
     1201 ggccggggca cgcaccctcg tcctgtgcga caccaatggg ggcaccctga ccgacgagct
     1261 gacgacgatc gtccacgacg tccgcgccac gctcgaggcc gacccggatg cgcccgcggt
     1321 cacctggggg atccacaccc acaacgacgc cgagctggcc gtggccaact cgctggccgc
     1381 cgtggccgcc ggcgtccgcc acgtccaggc cacgatcaac ggctacggcg agcgcgcggg
     1441 caacgccaac atggtcagcg tcctggccaa cctcgcgctc aagacgccac atccgctcgt
     1501 cccgtccggc ggcgggcggc tggccggcct gaccgacctg tcgcgctcga tcgccgagat
     1561 cgccaacgtc accccgaacg actaccagcc gtatgtcggc cggtcggcgt tcgcccacaa
     1621 ggggggcgtc cacggcgcgg ccgtggccaa ggtggagcgg agctaccagc acatcgatcc
     1681 gacctccgtc ggcaacgccg gacg
//
LOCUS       DATDDI010000232         2871 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_25656, whole genome shotgun sequence.
ACCESSION   DATDDI010000232 DATDDI010000000
VERSION     DATDDI010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25656"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..173
                     /locus_tag="VIU37_03295"
     CDS             33..173
                     /locus_tag="VIU37_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012997.1"
                     /translation="MTIPHVLELVAFVLAAVELIRSRGLSLLAWAVVFLALALLWGLL
                     GA"
     gene            603..854
                     /locus_tag="VIU37_03300"
     CDS             603..854
                     /locus_tag="VIU37_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012998.1"
                     /translation="MSVERPKWHDIEAAGELGIETFIRPALIASYDPTIVVMRILEDG
                     TYALTWSVNVRGDKRTLPEVETFIARVAEYINDLPVGDD"
     gene            893..1246
                     /locus_tag="VIU37_03305"
     CDS             893..1246
                     /locus_tag="VIU37_03305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6012999.1"
                     /translation="MAGVRIHHPTARNVRFTMTDPAIPYSVPRECTPPEFGGCGQWHT
                     HKTHHLNIDETGHTIIGDVLFEKVKGHLFAYGFTIANKVDKPPTLGIGLLAIGERAGA
                     WGNIPIIRAEDTIRG"
     gene            1239..1670
                     /locus_tag="VIU37_03310"
     CDS             1239..1670
                     /locus_tag="VIU37_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013000.1"
                     /translation="MANRFFNSWLNGILGAHATRVVLSTDTIKMSLIDEGAAAGVPDA
                     TVDDFWNDVSSGLIGTSYTLANKTVGTVAAGVFDNTVDPAPAFTAVSGATVEGLMFWK
                     DTTVATTSDLICYFDTATGLPLTPNGGDVNVTFSASGIFKN"
     gene            1672..2490
                     /locus_tag="VIU37_03315"
     CDS             1672..2490
                     /locus_tag="VIU37_03315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013001.1"
                     /translation="MIRRAFAAAALLALVALPLPVGADIPRRTLETQAWWNTAGLTIP
                     GAVGQHVHLRANVPVDWTPLDGVVSVHVKVTLHNQTGKATSFRVSDGSTVKQSWSIAL
                     GPCADCVWEGDVNVDFSKWSTGRREMRWTANIPSNDEGNRQYNSTGWQVCVRSCSPTY
                     RSGEWIEARGWYTGRGYQNARITSALSTVREGGVVKVKLAPGSGGLATTFSAAYLDPD
                     FHHGSAGRVLLTRSSSYSGTVTIPSDLAAGAHTLVLLASDGKNAGVLAVPFTAP"
     gene            2500..>2871
                     /locus_tag="VIU37_03320"
     CDS             2500..>2871
                     /locus_tag="VIU37_03320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013002.1"
                     /translation="MADAQILYASAFGQTITTTGPIYGTGTSISGASFSANTDYIILA
                     WAYLETTSTANEAFLRLQQGGVTVTDGEAKYELNSVSPDHKACIGFLRRITQGATPGT
                     VALDMGTFSTNDTTADLFIMAF"
BASE COUNT          466 a         1041 c          933 g          431 t
ORIGIN      
        1 agtcgtaccc tgcgcgctac aggaggtgca ccatgacgat cccgcatgtg ctcgagctgg
       61 tcgcgttcgt cctcgccgcc gtggagctga tccggtcccg gggcctgtcc ctgctggcgt
      121 gggccgtcgt gttcctcgcc ctcgccctgc tgtggggcct gctcggggct tgacgagccc
      181 gctacggttc gggtgggacc cgggtgcgga acgacgcccg gtagggcatg acctggtcac
      241 tccactacgg tcgaactgcg gatggcccgg gtcccatcga accatcgcag gcgggagtga
      301 caggttgatc gtcacgagct ccggctgtct ggtctgcggt cggcggcagg cgctccgctt
      361 ccacctcgtc cggcacgcca agcaggcgga tggacggcag acctcccggg gctgtggatc
      421 gatcgacctg tgcgagcggt gctggaccga cgcgaccaag cggaccaaga gccgccagaa
      481 cggccggaaa ccgcgaaatc cgggccgtgg ccgcccgatc atcgtgggag tggacgctga
      541 cgccaccctg ggggcgacgc ggacgccacg ggccccacag tcgtttccgg tggcggtccg
      601 gcgtgtcggt tgagcggccc aagtggcatg acatcgaggc ggccggcgag ctcggcatcg
      661 agacgttcat ccgcccggcg ctcatcgcca gctacgaccc gacgatcgtg gtcatgcgga
      721 tcctcgagga cgggacctac gccctgacgt ggtcggtcaa cgtgcgcggc gacaagcgca
      781 cgctgccgga ggtcgagacg ttcatcgccc gggtggccga gtacatcaac gaccttcccg
      841 tgggcgacga ctgagagtac cctgcgctcg acaacccgca tcgagggcag acatggcagg
      901 agtccgcatc caccacccga cggcgcgcaa cgtgcggttc acgatgaccg acccggcgat
      961 cccctactcg gtgccgcggg aatgcacccc gccggagttc ggcggctgcg gccagtggca
     1021 cacccacaag acccaccacc tgaacatcga cgagacgggc cacacgatca tcggggacgt
     1081 cctgttcgag aaggtcaagg gccacctgtt cgcctacggc ttcacgatcg cgaacaaggt
     1141 cgacaagccg ccgaccctcg gcatcggcct gctcgccatc ggggagcgcg cgggtgcctg
     1201 gggcaacatc ccgatcatcc gtgcggagga cacgatccgt ggctaatcgc ttcttcaact
     1261 cgtggctcaa cggcatcctc ggtgcccatg ccacgcgggt cgtgctctcg accgacacga
     1321 tcaagatgtc cctcatcgac gagggggccg ccgcgggcgt ccccgatgcg accgtcgatg
     1381 acttctggaa cgacgtgagc tccgggctca tcggcacctc gtacaccctc gccaacaaga
     1441 ccgtcggcac ggtcgcggcg ggcgtgttcg acaacaccgt cgacccagct ccggcgttca
     1501 ccgcggtcag cggcgcgacg gtcgagggcc tgatgttctg gaaggacacc acggtcgcca
     1561 cgacgtccga cctgatctgc tacttcgaca ccgcgacggg cctgccgctg acccccaacg
     1621 gcggcgacgt caacgtcacg ttctcggcgt ccggcatctt caagaactga catgatccgc
     1681 cgggcattcg cggcggcggc gctcctggcg ctcgtcgcgc tgcccctccc ggtcggggcg
     1741 gatatccctc gtcggaccct cgagacacag gcttggtgga acaccgccgg cctgaccatc
     1801 ccgggcgccg tcggccagca cgtccacctg cgggccaacg tgccggtcga ctggaccccg
     1861 ctcgacgggg tcgtcagcgt ccacgtcaag gtcaccctcc acaaccagac cggcaaggcg
     1921 acctcgttcc gcgtgtcgga cgggtcgacc gtcaagcaga gctggtcgat cgccctgggc
     1981 ccgtgcgccg actgcgtctg ggagggcgac gtcaacgtcg acttctcgaa gtggtcgacc
     2041 ggccgccggg aaatgcgctg gacggcgaac atcccgtcga acgacgaggg caaccgccag
     2101 tacaacagca ccggctggca ggtgtgcgtc cggtcgtgct ccccgaccta ccgctccggc
     2161 gagtggatcg aggcgcgggg ctggtacacc ggccgcggct accagaacgc ccggatcacc
     2221 tcggccctct cgaccgtccg cgagggcggg gtggtcaagg tcaagctggc ccccggtagc
     2281 ggcgggctcg ccacgacgtt ctcggccgcc tatctggacc ccgacttcca ccacggctcg
     2341 gccgggcgcg tcctgctcac ccgctcgagc tcgtattcgg gcacggtgac gatcccatcg
     2401 gacctcgcgg ccggggcgca taccctcgtg ctcctcgcca gcgacggcaa gaacgccgga
     2461 gtcctcgcgg tcccgttcac ggccccctag gagcgcgtcg tggctgacgc ccagatcctc
     2521 tacgcgtcag ccttcgggca gacgatcacg acgaccggtc ccatctacgg gaccgggacg
     2581 tcgatctcgg gcgcctcgtt ctccgccaac accgactaca tcatcctcgc ctgggcctac
     2641 ctcgagacga cctcgaccgc caacgaggcg ttcctgcgac tccagcaggg cggcgtcacc
     2701 gtcaccgacg gcgaggccaa gtacgagctc aactcggtca gccccgacca caaggcgtgc
     2761 atcggcttcc tgcgccggat cacccaaggc gcgacccccg gcacggtcgc gctcgacatg
     2821 ggcacgttca gcacgaacga cacgacggcc gacctgttca tcatggcctt c
//
LOCUS       DATDDI010000233         1643 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_316898, whole genome shotgun sequence.
ACCESSION   DATDDI010000233 DATDDI010000000
VERSION     DATDDI010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316898"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..994
                     /locus_tag="VIU37_03325"
     CDS             <1..994
                     /locus_tag="VIU37_03325"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013003.1"
                     /translation="SDLPLRYLAAADVLAAMPDLDERLALAERTLVALVADAELPAKI
                     AVHPRPDGSFAHAMPAHLRGPDPAGGDDLVGMKWVAGYPDNGALGLPAIHAVVVLNDP
                     GTGRPIGILDGGPITAMRTAAVSGVAIARYAPAIGGRAPRAGLIGAGVQGHSHLAILG
                     RTLPGVRLRVYDRDAERAGLLCETARITAGIADATVAPDARSAVTEADVVVTAASFGP
                     VRQVMTGQWLAPDALVVPVDYATYCAAEVARDAALFLVDHRDQFLANREAGLFEDYPD
                     PAATIGEALLAATPRPAGGRVVVTHLGVGLADVVFGSAILRRAEMLGLGVLLNR"
     gene            1095..>1643
                     /locus_tag="VIU37_03330"
     CDS             1095..>1643
                     /locus_tag="VIU37_03330"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY6013004.1"
                     /translation="MRIVKGIAVLAVTGLLVATVATVGLLIAVTARALPQESGTVRVP
                     GLGASVTVARDAAGIAQIVADTSHDLFFAQGYVHAGERMWQMEVWRHISAGRLAELFG
                     ESQLDTDRFIRTLGWRVAAQRDLDAFAPATRAVLDAYTAGVNAWLDGHRGSLGLAFLA
                     SGDTPEPWTDLDTVAWSKVQAWN"
BASE COUNT          200 a          603 c          618 g          222 t
ORIGIN      
        1 ctccgacctg ccgctgcgct acctggccgc cgccgacgtg ctggcggcga tgcccgatct
       61 cgacgagcgc ctggcactcg ccgagcgcac gctggtcgcc ctcgtcgccg acgccgagct
      121 gccggccaag atcgccgtcc atccgcggcc ggacggctcg ttcgcgcatg ccatgccggc
      181 ccacctgcgc ggcccggatc ctgccggcgg cgacgacctg gtcgggatga agtgggtcgc
      241 cgggtacccg gacaacgggg cgctcggact gcccgcgatc catgcggtcg tcgtgctcaa
      301 cgatccgggc accggccggc cgatcgggat cctcgacggc gggccgatca cggcgatgcg
      361 aaccgcggcg gtgtccggcg tggccatcgc ccggtacgcc ccggcgatcg gcggccgggc
      421 gccgcgggcc gggctgatcg gggccggcgt ccagggccac agccatctgg ccatccttgg
      481 ccggacgctc ccaggcgtgc ggctgcgcgt ctacgaccgg gacgccgagc gtgccgggct
      541 gctgtgcgaa acggcgagga tcacagccgg gatcgccgac gcgaccgtcg cgccggacgc
      601 acgatccgcc gtcacggagg ccgacgtggt ggtgacggct gcgtccttcg gaccggtgcg
      661 ccaggtgatg accggccagt ggctggcgcc ggacgccctc gtcgtcccgg tcgactacgc
      721 cacgtactgc gcggcggagg tggcgcgcga tgccgcgctg ttcctggtcg accaccgcga
      781 ccagttcctg gccaaccggg aggccgggct gttcgaggac tatccggatc cggccgcgac
      841 gatcggcgag gcgctcctcg ccgcgacacc cagaccggcc ggcggccggg tcgtggtcac
      901 gcatctcggc gtcggcctgg cggacgtggt cttcgggtcg gcgatcctgc gtcgtgccga
      961 gatgctcggc ctgggcgtgc tgctcaaccg ctgagccgcg cgcgaagcgc cgacagacgg
     1021 gcccgcgggc ggccacacta cgggacagac gcgccgcggg ccgtgcggcg gcggccgtgc
     1081 ggaggtgagg ttcggtgcgg atcgtcaagg gcatcgccgt cctcgcggtc accgggctgc
     1141 tggtcgcgac ggtcgccacg gtcgggctcc tgatcgcggt cacggccagg gcgctgccgc
     1201 aggaatccgg gaccgtccgc gtcccgggac tcggcgcatc ggtcacggtg gctcgcgacg
     1261 ccgcgggcat cgcccagatc gtcgccgaca cctcgcacga cctgttcttc gcccaggggt
     1321 acgtccacgc cggcgagcgg atgtggcaga tggaggtctg gcgccacatc tcggccgggc
     1381 ggctcgccga gctgttcggg gagagccagc tcgacaccga ccggttcatc cggacgctcg
     1441 gctggcgagt cgccgcgcag cgcgatctcg acgccttcgc gccggcgacg cgcgcggtcc
     1501 tggacgccta taccgccggg gtcaacgcct ggctcgacgg ccatcgtggc tcactcgggc
     1561 tggcgttcct ggcgagcggc gacacgccgg agccgtggac cgacctggac accgtcgcct
     1621 ggagcaaggt ccaggcctgg aac
//
LOCUS       DATDDI010000234         1731 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_421089, whole genome shotgun sequence.
ACCESSION   DATDDI010000234 DATDDI010000000
VERSION     DATDDI010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421089"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..745)
                     /gene="fsa"
                     /locus_tag="VIU37_03335"
     CDS             complement(83..745)
                     /gene="fsa"
                     /locus_tag="VIU37_03335"
                     /inference="COORDINATES: protein motif:HMM:NF013116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEY6013005.1"
                     /translation="MKIFLDTADIEEIRTAARWGVLDGVTTNPTLYAKVGGSYDEILQ
                     QVCKITPGPVSAECVSDDVDGMLEEGRHYAKLAPNIVVKVAMSENGLEAISRFADEGI
                     KTNCTLIFTANQGLLAAKAGASLISPFVGRLDDINQDGMDVIRDLVEILTIHEMDAEV
                     IAASIRNPLHMTQAALAGSHIATVPFKILQQMVHHPLTDKGIVQFKADWQKAHEAAAA
                     KA"
     gene            complement(783..>1731)
                     /locus_tag="VIU37_03340"
     CDS             complement(783..>1731)
                     /locus_tag="VIU37_03340"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEY6013006.1"
                     /translation="DTIYEVPLMFEEAGLGRLLVRELGLGDPDRAPDLASWRALVDRI
                     KAPKPTLEIALVGKYIELPDAYLSVTEALRHAAWAHGVDAKVRWVDSEALTKDNLHER
                     LEGAAGILVPGGFGHRGIEGKVLAAHFARDHRVPYLGLCLGLQCAVIEFAREVMDTKD
                     VNSTEFDMFTENPVIDFMPDQREMEEKGGTMRLGLYPAKLTAGSKAAAAYGQEVIYER
                     HRHRFEVNNRYRQTLEAAGMLLSGQSPDGRLVEIVELKDHPWFVASQFHPEFRSRPER
                     PHPLFDGFVAAALAVRDGRAPELQPVMATPENEPIEAAT"
BASE COUNT          235 a          584 c          608 g          304 t
ORIGIN      
        1 aggacggcgc gcggatcgcc tttggccgac catcgccgcg ggagcggtcg ggcctcgccg
       61 ttccgctccg cggcgcgcgg ggctaggcct tggcggccgc cgcctcgtgg gccttctgcc
      121 agtccgcctt gaactgcacg atccccttgt cggtcagcgg atggtggacc atctgctgga
      181 ggatcttgaa cggcaccgtg gcgatgtgcg agccggcgag cgccgcctgg gtcatgtgca
      241 gcgggttccg gatcgacgcg gcgatgacct cggcgtccat ctcgtggatg gtgaggatct
      301 cgacgaggtc gcggatgacg tccatcccgt cctggttgat gtcgtccagg cgccccacga
      361 acgggctgat caggctcgca ccggccttcg ccgcgagcag gccctggttg gccgtgaaga
      421 tcagcgtgca gttggtcttg atgccctcgt cggcgaagcg gctgatcgcc tcgagcccgt
      481 tctcgctcat cgccaccttg accacgatgt tcggggcgag cttcgcgtag tggcgtccct
      541 cctcgagcat cccgtcgacg tcgtcgctga cgcactcggc cgagaccggg ccgggcgtga
      601 tcttgcagac ctgctgcagg atctcgtcat acgagccgcc gaccttggcg tacagggtcg
      661 ggttggtggt cacaccatcg aggacgcccc agcgggcggc cgtgcggatc tcttcgatat
      721 ccgcggtgtc caggaagatc ttcatgtggg gcagctccgt cttcgactga atgaccttca
      781 gtctacgtcg ctgcctcgat cggctcgttc tccggcgtcg ccatgaccgg ctggagctcc
      841 ggggcgcggc cgtcgcgcac cgccagggcg gccgccacga agccatcgaa gagcgggtgc
      901 ggtcgttccg gccgcgagcg gaactcgggg tggaactggc tggccacgaa ccacggatgg
      961 tccttgagct ccacgatctc gacgagccgc ccgtccgggg actggcccga cagcagcatg
     1021 ccggccgcct cgagcgtctg gcggtaccgg ttgttcacct cgaatcggtg gcggtgccgc
     1081 tcgtagatga cctcctgccc gtacgcggct gcggccttcg agcccgcggt cagcttggcc
     1141 gggtagagcc cgaggcgcat cgtcccgccc ttctcctcca tctcgcgctg gtcgggcatg
     1201 aagtcgatga ccggattctc ggtgaacatg tcgaactcgg tcgagttgac gtccttggtg
     1261 tccatgacct cgcgggcgaa ctcgatgacc gcgcactgga ggccgaggca cagcccgaga
     1321 tacggcactc ggtggtcgcg ggcgaagtgg gcggcgagga ccttgccctc gatcccgcgg
     1381 tggccgaagc cgcccggaac gaggatgccc gcggcgccct cgagccgctc gtggaggttg
     1441 tccttcgtga gtgcctcgct gtcgacccag cggaccttcg cgtcgacgcc gtgggcccag
     1501 gccgcgtggc ggagggcctc ggtgacgctc aggtaggcgt cgggcagctc gatgtacttg
     1561 ccgacgagcg cgatctcgag cgtgggcttc ggagccttga tccggtcgac gagcgcccgc
     1621 caggacgcaa ggtcgggcgc ccgatccggg tcgccgaggc cgagctcccg gacgaggagc
     1681 cggcccagac ccgcctcctc gaacatcagc gggacctcgt agatcgtgtc c
//
LOCUS       DATDDI010000235         1899 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_691622, whole genome shotgun sequence.
ACCESSION   DATDDI010000235 DATDDI010000000
VERSION     DATDDI010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691622"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..1473
                     /gene="metK"
                     /locus_tag="VIU37_03345"
     CDS             223..1473
                     /gene="metK"
                     /locus_tag="VIU37_03345"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004083625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEY6013007.1"
                     /translation="MTSIVDAPSYLFTSESVTEGHPDKMCDQISDAILDAILREDPDA
                     RVACETATTTGLVVVLGEITTSTYVDFQSVVRDTVCDIGYTHADYGFDYLTCGTLVSV
                     KEQSPDIAQGVDAAIEVRDDAAPTFELGAGDQGMMFGFACRETPELMPLPIALAHRMA
                     RRLAEARKSGQLPYLRPDGKTQVTVEYEHGIPTRVRTVVVAAQHDPDVRAERLRSEII
                     ESVILPVIPHELRETDPVMHVNPTGRFVVGGPMGDAGLTGRKIIVDSYGGMARHGGGA
                     FSGKDPTKVDRSGAYAARWVAKNVVAAGLADRFEVEVAYGIGIAHPISFSVDSFGTGR
                     IDDAAIQALVERHFDLRPASIISALDLRRPIYRQTAAYGHFGRPDLDLPWERIDKAAL
                     LASEAGLPDPVPEPASAISAEVTA"
     gene            complement(1514..>1899)
                     /locus_tag="VIU37_03350"
     CDS             complement(1514..>1899)
                     /locus_tag="VIU37_03350"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HEY6013008.1"
                     /translation="AIIVAAQDVARRLGVAMSAAVVDSGDQLVAFERMDGADLVGITL
                     ARDKAFTALTNRMSTADLAPVAQPGAEFYGYATVAGGRTIVFAGGLPLERDGVLVGAV
                     GVSGGSAAEDQQAVEAAVSAFGQAG"
BASE COUNT          288 a          702 c          653 g          256 t
ORIGIN      
        1 tagccgcccg cccggacgtg gaacccgaag tgggcgaggc cgtcgacgac gaagtcgtcc
       61 ggcccgaagt ggacgacccg ctcgaccacc caccccgcca tcggcggagc atcgatcgcc
      121 ggcgggccgg tgacgagagg cctttggcat gaaccgcgag ccgccccggg ggtcgtggcg
      181 cagacccggt ggtacgctcc ccggaccatc cagcgagggg ccatgaccag catcgtcgac
      241 gcgccgtcgt acctcttcac ctcggagtcc gtgaccgagg gccaccccga caagatgtgc
      301 gaccagatca gcgacgcgat cctggacgcg atcctccgcg aggatcccga cgcgcgcgtg
      361 gcctgcgaga ccgccacgac gaccggcctc gtcgtcgtgc tgggggagat cacgacctcg
      421 acctacgtgg acttccagtc cgtcgtccgc gacaccgtct gcgacatcgg ctacacgcac
      481 gccgactacg gcttcgacta tctgacctgc ggcacgctgg tgtcggtcaa ggagcagtcg
      541 cccgacatcg cccagggcgt cgacgcggcc atcgaggtcc gggacgacgc agcaccgacg
      601 ttcgagctgg gcgcgggcga ccaggggatg atgttcgggt tcgcctgccg cgagaccccg
      661 gagctcatgc cactgccgat cgccctggcg caccggatgg ctcggcggct ggccgaagcc
      721 cgcaagtcgg gccagctgcc ctacctgcga ccggacggca agacgcaggt caccgtcgag
      781 tacgagcacg gcatcccgac ccgggtccga accgtggtcg tcgccgcgca gcacgacccc
      841 gacgtgcggg ccgagcggct gcgctccgag atcatcgaat ccgtgatcct gccggtgatc
      901 ccccacgagc tgcgcgagac ggacccggtg atgcacgtga acccgaccgg ccgcttcgtc
      961 gtcggcggtc cgatgggcga cgccgggctg accgggcgca agatcatcgt cgacagctac
     1021 ggcgggatgg cgcggcacgg cggtggcgcg ttctcgggca aggatccgac caaggtcgac
     1081 cggtccggtg cctacgccgc gcgctgggtg gccaagaacg tcgtggcggc cgggctcgcc
     1141 gatcgtttcg aggtcgaggt cgcatacggg atcgggatcg cccacccgat cagcttctcg
     1201 gtcgattcgt tcgggacggg ccggatcgac gatgcggcga tccaggcctt ggtcgagcgg
     1261 catttcgacc ttcgcccggc gtccatcatc tcggcgctgg acctccgccg cccgatctac
     1321 cgtcagaccg cggcctacgg ccacttcggc cggccggacc tggacctgcc gtgggagcgg
     1381 atcgacaagg cagcgctgct ggcttccgag gcgggcctgc cggatccggt gccggagcca
     1441 gcgtcggcaa tctccgcgga agtgactgcc tgacgccgag ggcgccccac tcggggaccg
     1501 gccccgcgcg tccctagccc gcctgtccga acgccgagac ggccgcctcg acagcctgct
     1561 ggtcttcggc cgcgctgccg ccactgaccc cgaccgctcc gaccagcacg ccgtcgcgtt
     1621 ccagcggcag gccgccggcg aacacgatcg ttcgaccgcc cgcgacggtg gcatagccgt
     1681 agaactcggc gcccggctgg gcgaccggcg cgagatcggc ggtcgacatc cggttcgtca
     1741 aagcggtgaa cgccttgtcc cgggccaggg tgatgcccac caggtccgcg ccgtccatcc
     1801 gctcgaaggc gaccagctgg tcgcccgagt cgacgaccgc cgcgctcatc gccacgccga
     1861 ggcggcgcgc cacgtcctgg gccgccacga tgatggccc
//
LOCUS       DATDDI010000236         2004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_296190, whole genome shotgun sequence.
ACCESSION   DATDDI010000236 DATDDI010000000
VERSION     DATDDI010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296190"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..1387)
                     /gene="moeB"
                     /locus_tag="VIU37_03355"
     CDS             complement(176..1387)
                     /gene="moeB"
                     /locus_tag="VIU37_03355"
                     /inference="COORDINATES: protein motif:HMM:NF006444.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HEY6013009.1"
                     /translation="MPKSYADLLREARDQIREVTPQEVDALPPGAATIVDVREASEWE
                     QGHLPGAQHVSKSYIEQQIEAAAPDRDAPVILYCAGGVRSLFAAQTLTDMGYTDVASM
                     SGGFQAWKGAGLDFETPVVLTAEQKQRYSRHLLIPEVGSEGQAKLLGSKALLIGAGGL
                     GSPAALYLAAAGVGTIGIVDFDVVDLSNLQRQIIHTSDRVGERKVESARVAINALNPE
                     IKVVAHEEMLVAANVERIIAGYDVILDGTDTFETRYILNDAAVAAGIPVIHASVFRFE
                     GQLTTFIPYEGPCYRCLYPTPPPPELAPGCSVAGVLGVVPGIMGMLQANEALKVLLGI
                     GDTLAGRLLLFDALDTSFTELKLRRDPNCPVCSTEAVAARAEGRPLAIPKFGAAASAA
                     TDTFVLGGPVA"
     gene            complement(1556..>2004)
                     /locus_tag="VIU37_03360"
     CDS             complement(1556..>2004)
                     /locus_tag="VIU37_03360"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEY6013010.1"
                     /translation="LSVRGIVDGRMDDLYRDYILEHYRRPHNFGVIENADASYEGANP
                     LCGDRITLMLGVKDGIVDRVGFTGRGCAISQASASLLTDEIKGKPLSEVAGFRADDLL
                     ELLGIEISPARLKCAMLSHDSLQHVLADLGAADPTNTTPSPAEAGA"
BASE COUNT          295 a          657 c          751 g          301 t
ORIGIN      
        1 acgtagacgt tgacgaaccg attgagctcg cccccgtcgg tcaggagctg gccgcgcagg
       61 cccgggtact gcgcgatcag cccgttcacg acatcgccga cggagccccc gccgagctcg
      121 agctccttct tcccgccgac ctgcggccgg aggacggccg ggatcttgac ggtgctcacg
      181 cgacgggccc gccgaggacg aacgtgtcgg tggcggccga cgcggcggcg ccgaacttcg
      241 ggatcgcgag cggccggccc tcggcacggg ccgcgacggc ctccgtcgag cagaccgggc
      301 agttcggatc gcgccggagc ttgagctcgg tgaacgacgt gtcgagggca tcgaacagga
      361 gcagccggcc ggcgagcgta tcgccgatcc cgagcaggac cttgagcgcc tcgttcgcct
      421 ggagcatgcc catgatcccg gggaccacgc cgagcacgcc ggcgacggag cagccgggcg
      481 ccagctcggg cggcggcggc gtcgggtaga ggcagcgata gcagggcccc tcgtacggga
      541 tgaacgtggt gagctggccc tcgaaccgga agacgctggc gtggatgacc ggaatgccgg
      601 cggcgacggc cgcgtcgttg aggatgtagc gcgtctcgaa cgtgtcggtc ccgtcgagga
      661 tcacgtcgta gccggcgatg atccgctcga cgttggcggc gacgagcatc tcctcgtggg
      721 cgaccacctt gatctcggga ttgagcgcgt tgatcgcgac gcgcgctgat tcgaccttgc
      781 gctcccccac ccgatccgag gtgtggatga tctggcgctg gagattggac aggtcgacga
      841 catcgaagtc gacgatgccg atcgtgccga ccccagccgc ggccaggtag agggccgccg
      901 gcgagccgag gccgcccgcg ccgatcagca gcgccttcga gccgagcagc ttcgcctggc
      961 cctccgaacc gacctcgggg atcagcaggt ggcggctgta gcgctgcttc tgctcggcgg
     1021 tcaggacgac cggagtctcg aagtcgagcc cggcgccctt ccaggcctgg aagccgccgg
     1081 acatcgaggc gacgtcggtg tagcccatgt cggtcagcgt ctgggccgcg aacagcgaac
     1141 ggacgccgcc ggcgcagtac aggatcaccg gcgcgtcgcg gtccggtgcc gcagcctcga
     1201 tctgctgctc gatgtagctc ttggagacat gctgcgcgcc cggcaggtgg ccctgctccc
     1261 attcggacgc ttcgcggacg tcgacgatgg tggcggcacc cggcgggagg gcatcgacct
     1321 cctgcggggt gacttccctg atctggtcgc gggcctcgcg aaggaggtcc gcgtacgact
     1381 ttggcattgg gtgaggggac tccgagtgat cgacaggctg gcggccggta cggcgccagg
     1441 gcggttgggg gtcggggggc cgcggacgga tccgcggcgg acgagccggc tcaggccggc
     1501 tggtgacacc tgcagcggcg ctcgatccgc atcgggacga ggcgcgaggg cccggtcatg
     1561 cgccggcctc cgccgggctc ggggtcgtgt tcgtgggatc ggcggcgccc aggtccgcga
     1621 gcacgtgctg gaggctgtcg tggctgagca tcgcgcactt gaggcgcgcg gggctgatct
     1681 cgatgccgag cagctcgagc aggtcgtcgg cgcggaagcc cgccacctcg gacagcggct
     1741 tgcccttgat ctcgtcggtc aggagcgagg cgctggcctg gctgatggcg caaccgcgac
     1801 cggtgaagcc gacccgatcg acgatgccgt ccttgacgcc gagcatcagc gtgatccggt
     1861 cgccgcacag cgggttggcg ccctcgtacg aggcgtcggc gttctcgatc accccgaagt
     1921 tgtgggggcg tcgatagtgc tcgaggatgt agtcgcggta gaggtcgtcc attcggccat
     1981 cgactatacc gcgaacgctc aatc
//
LOCUS       DATDDI010000237         1667 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_670834, whole genome shotgun sequence.
ACCESSION   DATDDI010000237 DATDDI010000000
VERSION     DATDDI010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_670834"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VIU37_03365"
     CDS             <1..465
                     /locus_tag="VIU37_03365"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HEY6013011.1"
                     /translation="PFSGVLPEDEPLLVTNSGDPAKPAPDDPAGRARALQYDLALNGW
                     ELGGGSVRIHRRDLLERSFLLQGHSLEAMQEKFGAVLDAFEFGAPPHGGIALGIDRWA
                     ALLAEQTNIREVMAFPKTQSGSDLMLEAPSVPDESQFAELGLRYVGLPEKRP"
     gene            504..1421
                     /locus_tag="VIU37_03370"
     CDS             504..1421
                     /locus_tag="VIU37_03370"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6013012.1"
                     /translation="MAALLGAACISFSGILYRYAAVSPSTGTVFRALFGLPLLGLVAY
                     SERRRFGALPSPTIRLAAVAGVFFAGDLLFWHHAIEAVGAGLATVLGNLQVVVVGVVA
                     WLVLGERPSRSTLLALPVVLLGVVLISGAVGGKPYGADPGLGVILGLCTALCYAGYLL
                     VIRRGGRDARRPAGPVAVATLFTVIASGIVGTLYGDLDLAPAPASLAWLALLGVTSQS
                     AGYLFISISLPRLPAVVTSIILLSQPVMTVVFSNVLLGEAPSPAQFLGVGLVIGGIAA
                     ATVPIARIRDGIGAARAARAVPDEDRMES"
     gene            1477..>1667
                     /locus_tag="VIU37_03375"
     CDS             1477..>1667
                     /locus_tag="VIU37_03375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013013.1"
                     /translation="MRDLGFRILDRRRPSASGSEAGRDRAARTVELRRTLRFGSVLVG
                     VVLLATGVAFAARYPDHAAS"
BASE COUNT          172 a          619 c          591 g          285 t
ORIGIN      
        1 ccgttcagcg gcgtgctgcc ggaggacgag ccgctgctcg tcaccaactc cggggacccc
       61 gcgaagcccg ccccggatga cccggccggc cgcgcacgcg cgctccagta cgacctcgcg
      121 ctcaacggct gggagctcgg cggtggatcc gtccgcatcc accgccgtga cctgctcgag
      181 cgatcgttcc tgctgcaggg tcactcgctc gaggcgatgc aggagaagtt cggcgcggtc
      241 ctcgacgcgt tcgagttcgg cgccccacca cacggcggca tcgcgctcgg gatcgatcgc
      301 tgggccgcgc tcctggccga gcagaccaac atccgcgagg tgatggcctt ccccaagacc
      361 cagtcgggca gcgacctgat gctcgaggcg ccgtcggtgc cggacgagag ccagttcgcc
      421 gagctcgggc tgcggtacgt cggtctcccg gagaagcgcc cctgatcctc gccgcgctcg
      481 actggttcgc cgaacggccg cggctggcgg ccctcctcgg ggcggcctgc atctcgttct
      541 cggggatcct ctatcggtac gcggcggtct cgccgtccac cggtacggtc ttccgcgccc
      601 tgttcgggct gccgctcctc ggcctggtcg cgtactcgga gcggcggagg ttcggagcgc
      661 tgccctcgcc gacgatccgg ctcgccgccg tcgccggagt cttcttcgcc ggggacctgc
      721 tgttctggca tcacgcgatc gaggcggtcg gcgccggtct cgcgacggtc ctgggcaacc
      781 tccaggtcgt cgtggtcggc gtcgtcgcct ggctggtgct cggggaacgg ccatcgcgtt
      841 cgaccctgct ggcgctcccg gtcgtgctgc tcggcgtcgt gctgatctcg ggcgcggtcg
      901 gggggaagcc ctacggggcc gatccgggcc tgggggtgat cctcgggctg tgcaccgcgc
      961 tgtgctacgc cggctacctg ctcgtgatcc ggcgcggcgg ccgcgacgcg cgccggccgg
     1021 ccggcccggt cgcggtggcc accctgttca cggtcatcgc gtcggggatc gtggggacgc
     1081 tctatggcga cctcgatctc gcgcccgcgc cggccagcct ggcctggctg gcgctcctcg
     1141 gggtcacctc gcagtcggcc ggctacctgt tcatctcgat ctcgctgccg cgcctgcccg
     1201 ccgtggtcac cagcatcatc ctgctgtcgc agccggtcat gacggtggtc ttctcgaacg
     1261 tcctgctcgg cgaggcgccg tcaccggcgc agttcctcgg tgtcgggctg gtcattggcg
     1321 ggatcgccgc cgcgacggtt ccgatcgccc ggatccgcga cgggatcggg gcggcccggg
     1381 cggcgcgagc cgtcccggac gaggatcgga tggagtcatg accggtacca acggttccta
     1441 ggcggctgcc atctgggccg tcatggtcga gtgaccatgc gtgaccttgg gttccgaatc
     1501 ctggaccgcc gccggcccag cgcctccggc tcggaggcgg gccgcgatcg tgccgcccgc
     1561 accgtcgagc tccgccggac gctccgcttc ggctccgtgc tcgtcggcgt cgtcctgctg
     1621 gcgaccggtg tcgcgttcgc cgcccgctac ccggatcacg ccgcatc
//
LOCUS       DATDDI010000238         2766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_587663, whole genome shotgun sequence.
ACCESSION   DATDDI010000238 DATDDI010000000
VERSION     DATDDI010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587663"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VIU37_03380"
     CDS             <1..462
                     /locus_tag="VIU37_03380"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease"
                     /protein_id="HEY6013014.1"
                     /translation="ERPAATTTSGAIHYSVGDAVNVGAQRTVDALGLIVDGLGQLGDS
                     IVNRPTEAPPVAGPVGIATQIGDVFWQLGPIITLYVAGILSANLAVVNILPFPPLDGG
                     RMLVIVLKRVFGERISLRAERMTYLVGFVFLFAFLIWITGFDIVRSLGGGT"
     gene            459..1694
                     /gene="ispG"
                     /locus_tag="VIU37_03385"
                     /gene_synonym="gcpE"
     CDS             459..1694
                     /gene="ispG"
                     /locus_tag="VIU37_03385"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: protein motif:HMM:NF001540.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEY6013015.1"
                     /translation="MTEAVDRRPRRRPTPSVDVGGVLVGSAHPVVVQSMTNTDTADAD
                     ATAIQVARLAHAGSQLVRVTVNTEEAAAAVPEMVRKVRGLGVDVPIVGDFHYNGHKLL
                     AEYPEMAAALAKYRINPGNVGAKRHDEHFATIVRIAVDNDVPVRIGVNWGSLDQAILT
                     ELMDANARSATPADARDVMIEAMLQSAIRSAELAEATGLRHDRIILSAKVSGVRDLVD
                     TYRLLAARTDYALHLGLTEAGMGDKGIVASTAGLAILLNEGIGDTIRVSLTPEPGAPR
                     EREVEIAQQVLQSLGLRSFLPQVSACPGCGRTTSTFFQEMAQQIQGYLKERMPEWRET
                     HPGAEELRVAVMGCVVNGPGESKHADIGISLPGTFEAPVAPVFIDGRLDRTLRGDSVV
                     AEFIEILESYVAERFPTPA"
     gene            1821..>2766
                     /gene="nusA"
                     /locus_tag="VIU37_03390"
     CDS             1821..>2766
                     /gene="nusA"
                     /locus_tag="VIU37_03390"
                     /inference="COORDINATES: protein motif:HMM:TIGR01953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HEY6013016.1"
                     /translation="MSRDFVGALLQLNAEKQISREQLIGAVEDGIQSAYRRVAGDEDI
                     HVRIDAETGKIRVFRARRVVAEIEDELTEMTVDQALAYDAKAKVGDLVETEQLDGDVF
                     GRIGAQTAKQIVLQRIREVERDQVFDQFASREGELMTGTVNRVEPRAIILDVGKNVEA
                     ILATTEQSTLEHYRIGQNVKAFVLEVRRSTKGPQIFVSRTHKGFLKRLFELEVPEIHS
                     GTVEIKAIAREAGSRSKVAVASRQEGLDPVGATVGQRGARVQAVVAELSGEKIDVIPW
                     SDDPAVFVANALSPAQVISVDIDEEHRIASVTVPERMLS"
BASE COUNT          445 a          963 c          957 g          401 t
ORIGIN      
        1 gagcgacccg ccgccaccac cacgagcggc gcgatccact actcggtcgg cgacgccgtc
       61 aacgtcggcg cgcagcgcac ggtggacgcc ctcgggctga tcgtggacgg tctcgggcag
      121 ctcggcgact cgatcgtcaa tcggcccacc gaggcgccgc cggtggccgg cccggtcggg
      181 atcgccacgc agatcggcga cgtcttctgg cagctcggcc cgatcatcac gctgtacgtc
      241 gcggggatcc tgtcggccaa cctggccgtg gtcaacatcc tcccgttccc gccactcgat
      301 ggtggacgga tgctcgtcat cgtcctcaag cgcgtcttcg gagagcggat cagcctccgc
      361 gccgagcgga tgacctacct cgtcgggttc gtcttcctgt tcgccttcct gatctggatc
      421 accggcttcg acatcgtccg gagcctcggc ggcggcacgt gaccgaggcg gtcgatcgcc
      481 ggccgcgacg gcggccgacc cccagcgtcg acgtcggcgg cgtgctcgtc ggcagcgcgc
      541 acccggtcgt ggtgcagtcg atgaccaaca ccgataccgc cgacgcggat gcgacggcga
      601 tccaggtcgc ccggctcgcc cacgccggtt cgcagctggt ccgcgtgacg gtcaacaccg
      661 aggaggccgc cgccgcggtg cccgagatgg tccgcaaggt ccgtggcctc ggcgtggacg
      721 tgccgatcgt cggcgacttc cactacaacg ggcacaagct gctggccgag tacccggaga
      781 tggccgccgc cctggccaag taccggatca atccgggcaa cgtgggggcc aagcgccatg
      841 acgagcactt tgcgacgatc gtgcggatcg ccgtcgacaa cgacgtcccg gtccggatcg
      901 gcgtcaactg ggggtcgctc gaccaggcga tcctgaccga gctgatggac gccaacgcac
      961 gctcggcaac ccccgccgac gcgcgggacg tgatgatcga ggcgatgctc caatcggcga
     1021 tccggtcggc cgagctggcc gaggcgaccg gtcttcggca cgaccggatc atcctgtcgg
     1081 ccaaggtgtc cggcgtccgc gacctggtcg acacataccg gctccttgcc gcccggacgg
     1141 actacgcgct ccacctcggg ctgaccgaag cggggatggg ggacaagggg atcgtggcct
     1201 cgaccgcggg gctggcgatc ctgctcaacg aggggatcgg cgacaccatc cgcgtctcgc
     1261 tgacgcccga gcccggcgct ccccgcgaac gcgaggtcga gatcgcgcag caggtgctcc
     1321 agtcgctcgg gctccgctcg ttcctgcccc aggtcagtgc ctgcccgggc tgcggccgga
     1381 cgacgtccac cttcttccag gagatggccc agcagatcca gggctacctc aaggagcgga
     1441 tgccggaatg gcgggaaacc catccgggcg ccgaggagct gcgggtcgcg gtcatgggct
     1501 gcgtggtcaa cggccccggt gagtccaagc acgccgacat cgggatcagc ctgccgggga
     1561 cgttcgaggc gccggtcgcg cccgtgttca tcgacggacg cctggaccgc accctgcgcg
     1621 gcgactcggt ggtcgccgaa ttcatcgaga tcctagagag ctacgtggcg gagcgcttcc
     1681 ccacgcccgc ctgaccgttg cgggcgtcca cgctcccggg tgtatactcc cgccaactga
     1741 acggccgctc cgcgacgtgg gtgaccccca cgtttctttt tgagcggcgc acgcgaatcg
     1801 cacaacgaac ggaggtcacg gtgagtcgag acttcgtcgg tgccctcctc cagctcaatg
     1861 ccgagaagca gatctcccgc gagcagctca tcggggctgt ggaggacggg atccagtcgg
     1921 cctatcgccg ggtggcgggt gacgaggata tccacgtccg gatcgatgcc gaaaccggca
     1981 agatccgggt cttccgcgcg cggcgcgtcg tggcggagat cgaggacgag ctgaccgaga
     2041 tgaccgtcga ccaggccctc gcctacgacg cgaaggcgaa ggtcggcgac ctggtcgaga
     2101 ccgagcagct cgacggcgac gtgttcggcc ggatcggcgc ccagaccgcc aagcagatcg
     2161 tgctccaacg catccgcgag gtcgagcgcg accaggtgtt cgaccagttc gccagtcgcg
     2221 agggcgagct catgaccggg accgtgaacc gggtcgagcc gcgtgcgatc atcctcgacg
     2281 tcggcaagaa cgtggaggcg atcctggcga ccaccgagca gtccacgctc gagcactacc
     2341 ggatcggcca gaacgtcaag gcgttcgtgc tcgaggtgcg acgctccacg aaggggccgc
     2401 agatcttcgt cagccggacc cacaagggct tcctcaagcg cctgttcgag ctggaggtcc
     2461 ccgagatcca cagcgggacc gtcgagatca aggcgatcgc ccgggaggcc ggcagccggt
     2521 cgaaggttgc cgtcgcctca cgccaggagg gcctcgaccc ggtcggcgcg acggtcggac
     2581 agcgcggcgc gcgcgtccag gcggtcgtgg ccgagctgtc cggcgagaag atcgacgtca
     2641 tcccgtggag cgacgacccg gccgtgttcg tggccaacgc gctgagcccg gcccaggtga
     2701 tctcggtcga catcgacgag gagcaccgga tcgcgagcgt caccgtgccg gagcggatgc
     2761 tctcgc
//
LOCUS       DATDDI010000239         3614 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_483652, whole genome shotgun sequence.
ACCESSION   DATDDI010000239 DATDDI010000000
VERSION     DATDDI010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3614
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483652"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..651
                     /locus_tag="VIU37_03395"
     CDS             214..651
                     /locus_tag="VIU37_03395"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013017.1"
                     /translation="MGVQRMDNVGIVVESLDTAISFFAELGLELEGRAVIEGDWSGRV
                     TGLRGQRVEIAMMRMPDGHGAIELSRFLTPPPVADHRNAPVNALGYLRVMFAVDDLDD
                     TLARLRKHGAHLVDEVVQYEDVYRLCYVRGPEGILIGLAEQIG"
     gene            complement(708..1406)
                     /locus_tag="VIU37_03400"
     CDS             complement(708..1406)
                     /locus_tag="VIU37_03400"
                     /inference="COORDINATES: protein motif:HMM:NF015146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEY6013018.1"
                     /translation="MTDRAALAALTAEIVECRRCPRLVAWRERVAREKVKRFQDETYW
                     GRPLPGFGDPEARILLLGLAPAAHGGNRTGRVFTGDASGDFLWAALHAEGLADRAASR
                     RADDGLTLTDTYIAAAVRCAPPANKPTPLERDTCGPFLEREIRLLDRLRVVVALGQFG
                     WDAGLRAFEVLGYPARPRPRFGHGYLARIGPYDLLGSYHPSQQNTFTGRLTASMLRDV
                     LRRAVDLSAARPRT"
     gene            complement(1454..2263)
                     /locus_tag="VIU37_03405"
     CDS             complement(1454..2263)
                     /locus_tag="VIU37_03405"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013019.1"
                     /translation="MTAPTLRVLPAGLAFGSRRSARLIERNLYVYKHGWLVILSGFFE
                     PLFYLLGIGFGLGSLIGTISGPAGHPISYQLFVAPALLTTAAMNGAINESTFNFFFKL
                     NYNKTFASILATPLSPGDIALGELGWALIRGGLYALGFMAVMGLFGLVVTPWVILAVP
                     AALLVGFAFGAVGMAATSFMTTWQDFDLIQLVVLPLFLFSGTFYPVDAYPDVLRVVVQ
                     LTPLYQGVDLIRSLAVGAISPILLFHVAYLALLGIAGLAVTSRRIDLLLLK"
     gene            complement(2260..3063)
                     /locus_tag="VIU37_03410"
     CDS             complement(2260..3063)
                     /locus_tag="VIU37_03410"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013020.1"
                     /translation="MTALPRTSSTVGRVFEHRFLQYRRTFRSSIFSSFLSPALFLTAM
                     GLGLGSYVSTSSTTTTLGGVSYLAFLAPGLLAATAMQSASFEATFPIIGGLVWNKIFH
                     AMYATPISARDIALGNLAWIAARLTFIATVFTAVIVLFGAASSPLVVLAVPAAVLTGM
                     AFAAPIAAFAATQRTPDRFSNIFRFGITPLFLFSGTFFPLSSLPAFLQPLAWLTPLYH
                     GVALTRGLSLGTITSDPVFAVIHLVALLAFIAAGTWALLITMERRLVRG"
     gene            complement(3070..>3614)
                     /locus_tag="VIU37_03415"
     CDS             complement(3070..>3614)
                     /locus_tag="VIU37_03415"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6013021.1"
                     /translation="RAGDQVEPLSGGMKRRLTIARSLINEPELLLLDEPTTGLDPQAR
                     HLLWDRLYRLKQRGVTLVLTTHYMDEAEQLCDRLVVMDKAKIVAEGSPRELIERYSTR
                     EVAELRFAPGVAETLDGRLDGIADRVEHLPDRVLLYADDGEAAASAVHQRGLKPETVL
                     VRRSSLEDVFLRLTGRSLIE"
BASE COUNT          600 a         1226 c         1317 g          471 t
ORIGIN      
        1 tgcgtcggtc gcggtccgct cgacgccgag gatctcgtag tagtcgcgct cggtggtggc
       61 catgctggac gtgaaggata cgggaggcgg ggccggcggt ccgctcggtc cgtggcgtcg
      121 ggctccggcg ggccggctcg cccgcgtgtc gggacgggga tccacgtctc gtcgatctgg
      181 cgccgggtct ccgcggtcac cgatacttgc cgcatgggcg ttcaacggat ggacaacgtc
      241 ggcatcgtgg tggagtcgct cgatacggca atctcgttct tcgccgagct cggcctcgaa
      301 ctcgaagggc gagccgtgat cgaaggagac tggtcggggc gcgtcaccgg cctgcgcggc
      361 caacgcgtcg agattgccat gatgcggatg ccggacggcc acggcgcgat cgagctctcg
      421 cgcttcctca cgccgcctcc ggtcgccgat caccggaacg cgccggtcaa cgccctcggc
      481 tacctccgcg tcatgttcgc ggtggacgac ctcgacgaca cactggcccg gctccgcaag
      541 catggcgcgc acctcgtcga cgaggtggtc cagtacgagg acgtgtatcg gctctgctac
      601 gtgcgcgggc ccgagggcat tctcatcggg ctggccgagc agatcggctg aggcccaggg
      661 ccgtcaagac gtgatcgacg gtcgctcctg gcgcctggag ctccggatta cgtgcgcgga
      721 cgggccgccg agaggtccac cgcccgccgc aggacgtcac gcagcatcga cgcggtcagc
      781 cggcccgtga aggtgttctg ttgactcggg tgatacgagc cgaggaggtc gtacggcccg
      841 atccgggcca ggtacccgtg gccgaaccgc ggcctggggc gcgccgggta gcccagcacc
      901 tcgaaggccc ggaggccggc atcccagccg aactggccga gggccacgac gacccggagc
      961 cggtcgagca gacggatctc gcgctcgagg aacggcccac aggtgtcgcg ttcgagcggc
     1021 gtcggcttgt tggccggcgg ggcgcagcgg acggccgcgg cgatgtaggt gtcggtcagc
     1081 gtcaacccgt catccgcccg gcgcgacgcg gcccggtcgg ccagcccctc ggcgtggagc
     1141 gcggcccaca ggaagtcccc ggaggcatcg ccggtgaaca cccggcccgt ccggttgccg
     1201 ccgtgggccg ccggcgcaag cccgagcaac aggatccggg cctcgggatc gccgaacccg
     1261 ggcagtggcc ggccccagta ggtctcgtcc tggaatcgct tgaccttctc gcgcgcgacc
     1321 cgctcccgcc acgcgacgag ccgcgggcag cggcggcact cgacgatctc ggccgtcaac
     1381 gcggcgagcg ccgcccggtc ggtcacgcca cagccaccgg ggcgccggcc gtcgtgcccg
     1441 ccatccgtct cgcttacttg agtagcagga gatcgatccg ccgcgacgtc acggcgagcc
     1501 cggcgatccc cagcagcgcc aggtaggcca cgtggaacag caggatcggc gagatggcgc
     1561 cgaccgcgag cgatcggatc aggtccacgc cctggtagag cggcgtcagc tggaccacga
     1621 cccgcagcac gtccgggtac gcgtcgaccg ggtagaacgt cccggagaac aggaacagcg
     1681 gcaggaccac gagctggatc aggtcgaagt cctgccaggt ggtcatgaac gacgtggcag
     1741 ccatccccac cgcgccgaac gcgaacccga ccagcagcgc cgccgggacg gcgaggatga
     1801 cccagggcgt gacgacgagc ccgaacaacc ccatcaccgc catgaacccg agcgcgtaga
     1861 gaccgccgcg gatcagcgcc cagcccagct cgccgagcgc gatgtcgccc ggcgacaacg
     1921 gcgtcgcgag gatcgacgcg aacgtcttgt tgtagttgag cttgaagaag aagttgaacg
     1981 tgctctcgtt gatcgccccg ttcatcgcgg ccgtcgtcag cagggcgggc gccacgaaca
     2041 gctggtagct gatcgggtgg cccgcgggtc cgctgatggt cccgatcagc gagccgagcc
     2101 cgaagccgat tccgagcagg tagaacagcg gctcgaagaa gcccgacagg atgaccagcc
     2161 agccgtgctt gtagacgtac aggttgcgtt cgatcagccg cgccgatcgc cggctgccaa
     2221 acgcgaggcc ggccgggagg acccgcaggg tgggggcggt catccgcgca ccagccggcg
     2281 ttccatggtg atcagcagcg cccacgtgcc cgcggcgatg aacgcgagca gtgcgaccag
     2341 gtggatgacc gcgaacaccg ggtcgctcgt gatcgtgccc agcgacaggc cccgggtcag
     2401 cgccacgccg tggtagagcg gcgtcagcca ggccagtggc tggaggaagg ccgggagcga
     2461 gctgagcggg aagaacgtgc cggagaacag gaacagcggc gtgatcccga accggaagat
     2521 gttgctgaac cggtcgggcg tccgctgggt ggcggcgaac gcggcgatcg gggccgcgaa
     2581 cgccatcccg gtcaggacgg ccgccgggac ggccagcacg acgagcggcg acgacgccgc
     2641 accgaagagc acgatgaccg cggtgaacac cgtggcgatg aacgtcagcc gggccgcgat
     2701 ccaggcgagg ttgccgagcg cgatgtcgcg ggccgagatc ggcgtcgcgt acatcgcgtg
     2761 gaagatcttg ttccagacga gcccaccgat gatcgggaag gtcgcctcga acgaggcgga
     2821 ctgcatcgcc gtggcggcca ggaggcccgg cgccaggaac gccaggtagg agacgccccc
     2881 gagcgtcgtc gtcgtcgacg acgtcgagac gtacgacccg agccccaggc ccatcgccgt
     2941 gaggaacagc gccggggaca ggaaggacga gaagatcgac gaccggaacg tccggcgata
     3001 ctggaggaag cggtgctcga agacccggcc gacggtcgag ctcgtgcgcg gcagcgcggt
     3061 catcggcccc tactcgatca gtgaccggcc ggtcagccgg aggaagacat cctcgagcga
     3121 cgaacgacgc accagcaccg tctccggctt gagcccgcgc tggtggaccg cgctcgccgc
     3181 ggcctcgccg tcgtcggcat agagcaggac ccggtcgggc aggtgctcga cgcgatcggc
     3241 gatgccgtcg agccggccgt cgagggtctc tgcgacaccg ggcgcgaagc gcagctcggc
     3301 tacctcgcgc gtcgagtacc gctcgatcag ctcgcgcggg ctgccctcgg ccacgatctt
     3361 ggccttgtcc atgaccacga ggcggtcgca cagttgctcc gcctcatcca tgtagtgggt
     3421 ggtcaggacg agcgtgacgc cccgctgctt gagccggtag aggcgatccc acagcaggtg
     3481 gcgggcctgc gggtccagcc cggtcgtcgg ctcgtcgagg agcagcagct ccggctcgtt
     3541 gatgagcgag cgggcgatgg tcaggcgccg cttcatcccg ccggagagcg gctcgacctg
     3601 gtcgccggct cgtt
//
LOCUS       DATDDI010000240         2239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_296260, whole genome shotgun sequence.
ACCESSION   DATDDI010000240 DATDDI010000000
VERSION     DATDDI010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296260"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2239)
                     /locus_tag="VIU37_03420"
     CDS             complement(<1..>2239)
                     /locus_tag="VIU37_03420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013022.1"
                     /translation="VRADELADDDRALAVLGDLERTRRVERIELARFARADLVVLIEA
                     ITGAPAGTELVDRVLERSDGNPLFAEELLAAERRGGPSAVSPMLGDLLRARLGTVSQA
                     TRNVLRVASLVGSEIDDELVAAVAGVPGPDVVAALREATERGLLVRSARAPVRYAFRH
                     RLLQEVTEAELLPGERRRLHAACAEALERTGRAAIVSGEIARHWLTAERPDRALPSAV
                     VAGLEAERRYAFADARHSFELAFELSGTVPVPSWPPGLDRVELLQRAADAAVLAGDPI
                     AAVDLARRALRELGPVADTRRQAAIHERLRWYLWESGDHEGAEAALEEAHRIVPAEPP
                     SATRARILGQFGGLRLRQGRFADSLAYAEEAIEVARASGALGELAFGLGVRGWDRAAF
                     GLADEGIGDLREGLAMAEFLEHPEGRALGIANLSSLLLYAGRPEEAIRTAMDGLESVR
                     SIGLERTYGGSLAATAAAGAYFLGRWTDARALCARAFALVEPGPEAVWPGAVAMRLAA
                     GSGDDELMRAGRAVAQPFLAVAPDRLHAAWFWLAIIEGELAADRFEAGQSRATAAIDG
                     LPPNILDEPTGSLFALALTIAAERAETARAVGDDSAAASQRSTAEGLVAEWQRRRAST
                     ETATPNRAIAEALDALCAAQATRALGTTDPLSWERAAEAHERLGLAYPGAYARFRQAE
                     ALVQAPMPRGPQSTRAARSAAAGPLRAALDTARLLGARPLVAACVLLARRARLDPALV
                     SERASA"
BASE COUNT          317 a          862 c          798 g          262 t
ORIGIN      
        1 tgccgacgcg cgctcgctga ccagcgccgg atccagccgg gcgcggcgag ccaggagcac
       61 gcatgcggcg accagcggtc gggcaccgag caggcgcgcc gtgtccagcg cggcgcggag
      121 cgggccggcg gcggccgatc gggcagccct ggtggactgg gggcctcgcg gcattggcgc
      181 ctgcaccagt gcctcagcct gacggaagcg cgcataggcg cccgggtacg ccagcccgag
      241 ccgctcgtgc gcctcggccg cccgctccca gctgagcgga tccgtcgtcc caagggctcg
      301 cgtcgcctgg gcagcacaga gtgcatccag ggcttcggcg atcgcccggt tcggcgtcgc
      361 ggtctcggtc gaggcgcgac ggcgctgcca ttcggccacg agcccctccg cggtcgaacg
      421 ctgggaggct gccgcagagt cgtccccgac cgcgcgggcc gtctccgctc gctcggccgc
      481 gatcgtcaag gccagggcga acagcgagcc cgtcggttca tcgaggatgt tcggcgggag
      541 gccgtcgatc gcggcggtcg cacggctctg gccggcctcg aatcgatcgg cggccagctc
      601 accctcgatg atcgccagcc agaaccacgc tgcatgcaga cggtcgggcg ccacggccag
      661 gaatggctgg gcgacggccc ggcccgctcg catcagctcg tcgtcccccg atccggcggc
      721 gagtcgcatc gcgacggcac ccggccagac cgcctccggc ccgggttcga cgagcgcaaa
      781 ggcccgggca cacagggcgc gcgcatcggt ccaccggccg aggaagtagg ctccggccgc
      841 ggccgtggcc gccagggatc caccgtacgt ccgctccagc ccgatcgaac ggaccgactc
      901 cagcccgtcc atcgccgtgc gaatggcctc ctccgggcga ccggcgtaca ggagcaggct
      961 cgagagattc gcgatcccga gtgcccgccc ctcgggatgc tcgaggaatt ccgccatggc
     1021 gagcccctcg cggaggtcac cgatcccttc gtcggccagg ccgaaggcgg cccggtccca
     1081 gccccgcaca ccaagcccga aggcgagctc gcccagcgcc ccggacgccc gggccacctc
     1141 gatcgcttcc tccgcgtacg ccagcgaatc ggcgaacctg ccctgccgaa gccggagccc
     1201 gccgaactgc ccgaggatgc gggcccgcgt ggccgagggg ggctcggcgg gaacgatccg
     1261 gtgcgcctcc tcaagggcgg cctcggcgcc ctcgtggtca cccgattccc agaggtacca
     1321 ccgcagccgt tcatggatgg ccgcctggcg gcgcgtgtcg gcgaccgggc ccagctccct
     1381 gagcgcgcgc cgcgcgaggt cgacggccgc gatggggtcg ccggcgagca cggccgcatc
     1441 cgccgctcgc tgcagcagct cgacccgatc gagcccggga ggccaggacg gcaccgggac
     1501 cgttccggac agctcgaacg ccagctcgaa gctgtgtcgc gcgtcggcga acgcgtaacg
     1561 acgttcggct tcgagtccgg ccacgaccgc cgagggcagg gcccggtcgg gacgctcggc
     1621 ggtcagccaa tgacgggcga tctcacccga gacgatcgcc gcccgaccgg tccgctcgag
     1681 cgcctcggcg caggcggcat gcagacggcg acgctcaccg ggcagcagct ctgcctcggt
     1741 cacttcctgg agcaggcggt gacggaaggc gtaccgaacc ggcgctcgcg cgcttcgcac
     1801 caggaggccc cgctcggtgg cctcccggag ggcagcgacg acgtccgggc cgggcacccc
     1861 ggcaaccgct gcgaccagct cgtcgtcgat ctcgctgccg accagcgacg ccacccgcag
     1921 gacgtttcgg gttgcctggc tgaccgtccc gagccgcgca cggagcaggt cgccgagcat
     1981 cggcgacacg gccgaggggc cgccccgtcg ttcggccgcc aggagctcct cggcgaagag
     2041 cggattcccg tcactccgct ccaggacgcg gtcgaccagc tcggtccccg caggcgctcc
     2101 ggtgatcgcc tcgatcagga cgacgaggtc cgcacgggcg aaccgcgcga gctcgatgcg
     2161 ctcgacacgc cgggtccgct cgaggtcgcc cagaacggcc agcgctcgat cgtcgtctgc
     2221 cagctcatcg gcgcgaacc
//
LOCUS       DATDDI010000241         5403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_129927, whole genome shotgun sequence.
ACCESSION   DATDDI010000241 DATDDI010000000
VERSION     DATDDI010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129927"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            386..2089
                     /locus_tag="VIU37_03425"
     CDS             386..2089
                     /locus_tag="VIU37_03425"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY6013023.1"
                     /translation="MRLLGFLALAAPVVLGILLLDQPATLSWLGDNERSILAALAVAT
                     IGVCLTIGVMQVWTNVRLRRLVKAAERIADGDYTVGVSTNANGRLERRLASAINRISV
                     SLADTYDRATIDRLTGVFNRQALLAELFAEVERASRYDRPLSVAFVDIDHFKVVNDTY
                     GHGAGDVVLRGVAQVLSANLRASDLLGRYGGEEFMLILTETAVEEGAVLAEKLRSLVE
                     RERFAIDAEQNLSVTISIGIVGGFGEQLRMEALVRDADAAMYSAKSLGRNQTYVFAEP
                     NDDARVPRAPISNAGRARAVDIGRRAREAATAALLEVVASLPQYRGRPSAVITTIVES
                     MARTMQLPDAEVERIRVAAMLHDIGKLALPDEILDKRSPLTSAEWRSVVQHPRIGQVI
                     LEQAAALKDAIPIILHHHERFAGHGYPYGLRGTEIPLGARIVAIADAYDAMVNDRPYK
                     PAIGHGAALDELRRHAGTQFDPELVTLFCDLFASAAPAPDPAMLALGARADSGDRRVG
                     DRAATADDHRRRASRANAPATRTMASAADATMELGGGPAADRAGAKRPTNPDGRGRAA
                     G"
     gene            complement(2107..2520)
                     /locus_tag="VIU37_03430"
     CDS             complement(2107..2520)
                     /locus_tag="VIU37_03430"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013024.1"
                     /translation="MLGDHLVFPILLSKDLAASRAFYHDTLGLDILREDEERIIFRCG
                     GGSQLSVTLSTTGTADTQTQLAWRVPDLRAELDDLRARGVPIQEYDLPDPKTENGIAD
                     MGFAWAAWIIDPSRNVLAIIQPKPPGTPAASGTSG"
     gene            complement(2575..2922)
                     /locus_tag="VIU37_03435"
     CDS             complement(2575..2922)
                     /locus_tag="VIU37_03435"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6013025.1"
                     /translation="MDTPAIKVYPDLLAETSVPQRGILSQTLSNVDGIELVLFAFAPG
                     EALTEHTSARPAIIHILSGEGDLTVGDGAYAARPGTWARMPADCRHSLAARTPMVMAL
                     YLLPTDRTVATGR"
     gene            2940..3776
                     /locus_tag="VIU37_03440"
     CDS             2940..3776
                     /locus_tag="VIU37_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013026.1"
                     /translation="MRSGPVAAAIAAEERKARSGGSRQDSGMADERRRRRTVLGLILA
                     AGLTVASSGVPGPSVAAAAAVAAGGLPAWHGGIDLYRDGTYTVQKSWLWCTAAGVQIV
                     RNIVDHESDHTAGAQRRYFAWMRQHNRYHLPLSAGVDPQGWAAGLRHFVDDRYRLVAS
                     TTFDDALRSAVRRLRQTSLPVALAVSHGNHGWILTGFTATADPLTSGSFRVTGVRVVG
                     PLYGLQSRNGYDMPPDTRLTPAELRRFLTPWRYAPVSMVWDGRYVSIQPVPIVAAVAT
                     RR"
     gene            3897..4373
                     /locus_tag="VIU37_03445"
     CDS             3897..4373
                     /locus_tag="VIU37_03445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEY6013027.1"
                     /translation="MNRVLLTGRLTRDPEMRGLASGKNVTTFTVASNEFIGGGKEKAE
                     YHSIVTWDRLAEIAGRYLGKGQQVAIEGRLQTRSWDDERGARHWKTEIVASHVEMLSG
                     RRKKDYEAQQAADSLASQATALGEASAADPIAEGAFDPGDADEDADGAGEEAAAAA"
     gene            complement(4443..>5403)
                     /gene="rsmI"
                     /locus_tag="VIU37_03450"
     CDS             complement(4443..>5403)
                     /gene="rsmI"
                     /locus_tag="VIU37_03450"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEY6013028.1"
                     /translation="DDRGRLPVPAPATGLGTGVTAAAAPASSGTEDDAGRAGTLYVVA
                     TPIGNLGDVTLRAIEILRSVPLIAAEDTRHTHRLLARHGIATRTTSYHARSGPGRATA
                     LLDHLRSGEDLAIVTDAGTPGVSDPGGELVSAWVAAGGTVVPIPGASAVLAAVVGSGV
                     AGPRWSFEGFLPRGGRERRERLARVAADDRATVLYEAPGRVGATLADLAAACGHERPG
                     AVCRELTKLHETIERGTLGELAAAAGDGRIPARGEFTLVVGEWAGARPAAAPEAAADA
                     LRDARAEVERLVAGGLGRSEAARRVAAATGLSRRQLYGATASG"
BASE COUNT          760 a         1951 c         1964 g          728 t
ORIGIN      
        1 gaaggagcgg agccgacaac gcacgcatcg gccgatcctg cgggcgcgtc caactgaaaa
       61 ggcccctccc catctggggt gggaccttgc agatagacct ctcccgcgtc gcgccgccgg
      121 tgccgcggcg gatcatcgtt ggccggtcgc tcgggcgcct cacgggacga ccgatgcgcc
      181 ttgcaagcgc gatcgctgac ctcctggtac gcggggcccg gcccgcctgc tcgaggaggc
      241 tggagtatag cagggcgacc tccggagaac ggacgcggga cggcacgtgc gcccgcgggc
      301 cgacggcgcg gtacgaccgg cctgcggcgg tcggtacctt caggcgagcc ggggagacag
      361 cctgcccgac tagccttgat cggtgatgcg cctcctcgga ttcctggcgc tcgcggctcc
      421 ggtcgtgctc gggatcctgc tgctggatca gccggccacc ctgtcgtggc tgggcgacaa
      481 cgagcgctcc atcctcgccg cgctggccgt ggccacgatc ggcgtgtgcc tgacgatcgg
      541 cgtgatgcag gtctggacca acgtgcggct gcgtcgcctg gtcaaggccg ccgagcggat
      601 cgcggacggc gactacaccg tcggggtgtc gacgaacgcg aacggccgcc tcgagcgacg
      661 gctggcgagc gcgatcaacc ggatctcggt ctcgctggcc gacacctacg accgggccac
      721 gatcgaccgg ctgaccggcg tcttcaaccg ccaggccctc ctcgccgagc tctttgccga
      781 ggtcgagcgc gcgtcgcgct acgaccgccc actgtcggtc gccttcgtcg acatcgacca
      841 cttcaaggtc gtcaacgaca cgtacggtca cggcgccggc gatgtcgtgc tgcgcggcgt
      901 cgcccaggtg ctgtcggcca atctccgcgc gagcgacctg ctcggccggt acggtggcga
      961 ggaattcatg ctgatcctga ccgagaccgc ggtcgaggag ggcgcggtcc tggctgagaa
     1021 gctacgctcg ctggtcgaac gcgagcggtt cgccatcgac gccgagcaga acctgtcggt
     1081 cacgatctcg atcggcatcg tcggcgggtt cggcgagcag ctgcggatgg aagcactggt
     1141 gcgcgacgcc gatgccgcga tgtactcggc caagtcactc ggccggaacc agacctacgt
     1201 cttcgccgag ccgaacgacg acgctcgagt gccccgggca ccgatctcga acgccggccg
     1261 ggcacgggcc gtcgacatcg ggcgccgggc gcgcgaggcg gcgaccgccg cgctgctcga
     1321 ggtcgtcgcc tcgcttcccc agtaccgggg acggccgtcc gcggtcatca cgacgatcgt
     1381 cgagtcgatg gccaggacga tgcaactgcc cgacgcggag gtcgagcgca tccgcgtcgc
     1441 ggccatgctc cacgacatcg gcaagctggc gctgcccgac gagatcctcg acaagcgctc
     1501 gccgctcacc tccgccgagt ggcgaagcgt cgtccagcat ccccggatcg gacaggtcat
     1561 cctcgagcag gcggccgcgc tcaaggacgc catcccgatc atcctccacc accacgaacg
     1621 gttcgccggc cacggctacc cgtatggcct gcgcggtacg gagatcccgc tcggtgcccg
     1681 gatcgtggcg atcgcggacg cgtacgacgc gatggtcaac gaccggccgt acaagccggc
     1741 catcggtcac ggtgccgcgc tcgacgaact acgccgccat gcggggacgc aattcgatcc
     1801 ggagctggtg accctgttct gcgacctgtt cgcatcagcc gcaccggcgc ccgatccggc
     1861 gatgctggcg ctgggcgcgc gggcggacag cggcgaccgt cgcgtcggcg accgggccgc
     1921 gacggccgac gaccatcgac ggcgcgcctc gcgagccaac gccccggcga cacggacgat
     1981 ggcgtccgcg gcagacgcga ccatggagct cggcggcggg cccgcggcgg atcgggccgg
     2041 cgcgaaacgg ccgaccaacc ccgacgggcg aggacgcgcc gcgggctgac gccggccctt
     2101 cggccgtcag ccggaggtgc cgctcgcggc cggtgtgccg ggcggctttg gctggatgat
     2161 cgccagcacg ttccggctgg gatcgatgat ccaggccgcc caggcgaagc ccatgtcggc
     2221 gatcccgttt tcggtcttcg ggtcgggcag gtcgtactcc tggatcggga cgccgcgggc
     2281 gcgcaggtcg tcgagctcgg cccgcaggtc aggcacgcgc caggcgagct gggtctgcgt
     2341 gtcggcggtg ccggtcgtgc tgagcgtcac cgacagctgc gatccgccgc cgcagcggaa
     2401 gatgatccgc tcctcgtctt cgcgcaggat gtcgagcccg agcgtgtcgt ggtagaaggc
     2461 gcggctcgcc gcgagatcct tcgacagcag gatcgggaac acgaggtgat cgccgagcat
     2521 cgacagccct cctgacgctg cgccgcgagg tgccgctcgc gaattgaagc ctgttcagcg
     2581 accggtggcg acggtccggt cggttggcag caggtacaac gccatgacca tgggcgttcg
     2641 cgccgcgagg ctgtgccggc agtcggccgg catccgcgcc cacgtgcccg gccgggcggc
     2701 ataggcgccg tcaccgaccg tgagatcgcc ctcgcccgag aggatgtgga tgatcgccgg
     2761 gcgagccgag gtgtgctcgg tgagcgcctc gccaggcgcg aaggcgaaga ggacgagctc
     2821 gatcccgtcg acgttcgaga gcgtctggct caggatgcct cgctggggaa cgctcgtctc
     2881 cgccaggagg tccggataga ccttgatcgc tggggtgtcc atcgctgaac agtagcgcga
     2941 tgcggtccgg accggtggca gccgcgatcg cggccgagga gcggaaggcg cgatccggcg
     3001 gatcgaggca ggattcgggc atggcggacg agcggcgtcg ccgtcggacg gttctcggac
     3061 tgatcctggc ggccgggctg acggtggcct cgagtggcgt cccggggccg tccgtcgctg
     3121 ccgccgccgc ggtcgcggcg ggcgggctgc cggcctggca cggcggcatc gacctctacc
     3181 gcgacggcac ctacacggtc cagaagagct ggctgtggtg caccgcggcc ggggtccaga
     3241 tcgtgcgcaa catcgtcgac cacgagtccg accacacggc cggcgcccag cgtcgctact
     3301 tcgcgtggat gcggcagcac aatcgctacc acctgccgct gtcggccggc gtcgatccgc
     3361 agggctgggc ggccgggctc cggcacttcg tcgacgaccg ctaccggctg gtcgcgagca
     3421 ccacgttcga cgacgccctg cgctcggccg tccggcgact gcgccagacc tcgctgccgg
     3481 tcgccctggc cgtgtcgcat ggcaaccacg gctggatcct gaccgggttc acggccacgg
     3541 ccgacccgtt gaccagcggg tcgttccggg tgaccggcgt ccgggtcgtc ggcccgttgt
     3601 acgggctcca gagccgcaac ggctacgaca tgccgcccga caccaggcta acaccggccg
     3661 agctgcgccg cttcctcacg ccctggcggt atgccccggt gtcgatggtc tgggacggcc
     3721 ggtacgtctc catccagccc gtgccgatcg tcgcggccgt ggcgacgcgc cggtgatccg
     3781 cgggtaaggg ttcgatacgc ctcggtgcag gggtgatcgc tagggtgacc gcatcacccc
     3841 gccggaacgc agggtcgcga tcggcgcagc cgaccgaccg ggaaggagat cggaccgtga
     3901 acagggtcct cctcacgggg cgcctcacgc gcgacccgga gatgcgcggg ctggccagcg
     3961 gcaagaacgt cacgacgttc accgtggcca gcaacgagtt catcggcggt ggcaaggaga
     4021 aggccgagta tcactcgatc gtcacctggg atcgtctcgc ggagatcgcg ggccggtacc
     4081 tcggcaaggg ccagcaggtc gccatcgagg gccgcctcca gacgcgatcc tgggacgacg
     4141 agcgcggcgc gcggcactgg aagaccgaga tcgtcgcgtc acatgtcgag atgctgtccg
     4201 ggcgacgcaa gaaggactac gaggcgcagc aggcagcgga ttcgctcgcg tcgcaggcca
     4261 ccgcgctcgg cgaggcctcg gccgcggatc ccatcgcgga gggtgccttc gatcccggcg
     4321 atgccgacga ggacgcggac ggtgccggcg aggaggccgc cgcggccgcc tgaaccggcc
     4381 acgttcggac gccttttcct tcggcggcgg cgcggccccc ctcccgcgcc gtcgccggcc
     4441 gcctagcccg acgcggtggc accgtagagc tgccgtcgcg acaatccggt cgccgctgcc
     4501 acgcgacggg cggcctcgct ccggcccagg ccgccggcca ccagccgctc gacctccgcc
     4561 cgggcgtccc ggagcgcgtc tgcggccgcc tccggggctg cggccggccg ggcaccggcc
     4621 cactcgccga cgacgagcgt gaactcgcca cgtgccggga tccggccgtc tccggccgcg
     4681 gcggcgagct cgccgagcgt tccacgctcg atcgtctcgt ggagcttggt gagctcgcgg
     4741 cagaccgcgc ccggtcgttc gtggccgcac gctgccgcca ggtccgccag ggtcgcaccg
     4801 acccggccgg gcgcctcgta gaggacggtc gcgcggtcgt cggccgcgac tcgcgccagc
     4861 cgctcgcgac gctcgcggcc gccgcgcggc aggaacccct cgaacgacca gcgcggcccg
     4921 gccacgcccg agccgaccac cgccgccagc acggccgacg ctccggggat cggcacgacc
     4981 gtcccgccgg cggcgaccca ggcggacacc agctcgccgc cggggtcgct gacgccaggg
     5041 gtgccggcgt cggtcacgat cgccaggtcc tcgccggacc ggaggtggtc gagcagcgcg
     5101 gtcgcccggc ccggaccgct ccgggcgtgg tagctggtcg tccgcgtcgc gatcccatgg
     5161 cgcgccagca ggcgatgcgt gtgccgcgtg tcctcggcgg cgatcagcgg cacggaccgg
     5221 aggatctcga tggcgcggag ggtgacgtcg ccgaggttcc cgatcggggt cgcgacgacg
     5281 tacagcgtgc cagcccggcc ggcatcgtct tccgtgccgg acgacgcagg cgccgccgca
     5341 gccgtcacac ccgtgccgag cccggtcgcc ggcgcgggta caggtagtcg accccggtcg
     5401 tcc
//
LOCUS       DATDDI010000242         3700 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_358780, whole genome shotgun sequence.
ACCESSION   DATDDI010000242 DATDDI010000000
VERSION     DATDDI010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3700
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358780"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..>3700
                     /locus_tag="VIU37_03455"
     CDS             29..>3700
                     /locus_tag="VIU37_03455"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HEY6013029.1"
                     /translation="MTGTFERHGRTQVFVPAALAPATTYTVTIGKGLARSGTDLRLLD
                     DVVFRFETDGPADVRARLAFAREAIEAAPGQPLTVAVEAIRPWLGDGRAPAPASASLR
                     IYRLPSLDVASRALTDFLQAPRWTQYSDPAMPTTGLRVAAAFRGPLVPLARDILGLEV
                     PVELDPGWYILEIQGTRRSQAFLQVTSVSSWVTVMSDRTVVWVNDVVTHRALEGATVA
                     VGTAKPFATSDADGLAVGRTPTALVPAAAGGASDSSPVLRVTSPAGAVVLVPFNVRGD
                     REAYRGEWWETYGSANETYWSLLYTDRELYRQTDRIEAWGYLRGRDGGSVPGTVEVRL
                     VSTRASDSAEVTAAASVSVHPGADGAFIASLPVVNLPVASYEVEAVVDGRVVDSRWIE
                     VAVIRKPPYRLEVTANPLAVITGTPVSMTAGARFFDDTPVASLDLVVTGGEAVPEQRL
                     TTDPTGQATATIDTKTTSVSSADWRWVNVRPAGPESADIQGAATVVIFPSAYDLAASG
                     TVSAGRIRLSGKVTAVDLDRARRMLAAGTWDGDASGAPIAGVKVRATITELVPTRRQI
                     GTEYDFVEKVVRPVYEYDYTRKVLKTVTAVSARDGTIRYSVPVLHADHSYEVELATTD
                     RSGRAQHRTVWVGPSEPVTNSDGIQFVTDDGTPAAGSDYGIGDRVSWRIVDDGRDLPS
                     GSTDRYLFVVAQRGLRAAAVTDAPQFRHTFAAADAPGIFVMGVRFTGTTYAPKAAAWA
                     DFDESQRAIRVAITADRERYRPGDTAGLSVRTTDAGGSPVAATVVVQAVDEKLFAMGG
                     AHVPQPLPDLYARVDSGIVRLTATHQVPSMAGPEGEGGDTTGGGGDGDRTDFRDTLLF
                     RELHTDASGQASTSVRLSDDLTSWHVSASAVTSGLATGVGELRVPVGLPFFVEVTAAD
                     GYVATDRPVIQVRAFGDALRAGDRVQFTVAAPALGLAETKLNGTAFKPVSVALPALTL
                     GRPSITVGAVAVSRTGADGRPLADRLVRSFEVVASRLTKAATAYGRLQDGLPRAPDDA
                     ESATWTFADAGRGRLLAILSGLADAPGLRLDRAIAQTAARQILVDAFGHDPEDFPPTR
                     IDLSDYPIGTPGDGGEGAEAGVGLLPYGGLDPWLAARVALLAPDALAASDLRNALESI
                     RGASTTGRDLGIAALAGLAALGEPVLDDLRTASRQPGLTPTERIYLALGFEAIGDDPS
                     AVVLERGLLESDGERLGAWV"
BASE COUNT          498 a         1350 c         1339 g          513 t
ORIGIN      
        1 ggccgatcac ttctcgattc ggccggccgt gacgggcacg ttcgagcggc atggccgcac
       61 ccaggtcttc gtgcccgccg cgctcgcacc cgcgacgacg tacacggtca cgatcggcaa
      121 gggtctcgcc cgatccggta cggacctgcg cctgctcgac gacgtggtct tccggttcga
      181 gactgacggc ccggccgacg tgcgggcccg cctggccttc gcgcgcgagg ccatcgaggc
      241 cgcacccggc cagccgttga cggtcgccgt cgaggcgatc cggccgtggc tcggcgacgg
      301 gcgggcgccc gccccggcat cggcgtcgct ccggatctac cgcctgccgt cgctggacgt
      361 cgccagccgg gcgctgaccg acttcctgca ggccccgcgc tggacgcagt attccgatcc
      421 cgcgatgccg acgaccggac tccgggtggc ggccgccttc cgcgggccgc tcgtgccgct
      481 ggcgcgtgac atcctcgggc tcgaagtccc ggtcgagctc gatcccggct ggtacatcct
      541 ggagatccag ggcacgcgac gatcgcaggc gttcctccag gtcacatcgg tctcgagctg
      601 ggtgaccgtg atgagcgacc ggacggtcgt ctgggtcaac gacgtcgtga cccatcgagc
      661 gctcgagggc gcgacggtcg cggtcggcac ggcgaagccg ttcgcgacgt ccgacgccga
      721 cggactcgcc gtgggtcgca ccccgacggc gctcgttccg gcggccgcgg gcggtgcgtc
      781 ggactcgtcc cccgtcctcc gggtgacctc cccggccggg gccgtcgtgc tcgtcccgtt
      841 caacgtccgc ggggaccgcg aagcctaccg aggcgagtgg tgggagacct acgggtcggc
      901 gaacgagacc tactggtcgt tgctctacac cgaccgcgag ctctaccggc agaccgaccg
      961 gatcgaggcg tggggctacc tgcgcgggcg cgacggcggc agcgtacccg gcacggtcga
     1021 ggtccggctc gtgtcgaccc gggcgagcga cagcgccgaa gtgacggcgg ccgcctcggt
     1081 cagcgtgcac cccggggcgg acggcgcgtt catcgcgtcg ctgcccgtcg tgaacctccc
     1141 ggtcgcctcg tacgaagtcg aggcggtcgt cgacgggagg gtcgtcgatt cgcgctggat
     1201 cgaggtggcg gtcatccgaa aaccgccgta ccggctcgag gtcacggcga acccgctggc
     1261 cgtcatcacc gggacgcccg tctcgatgac ggccggagcc aggttcttcg acgacacgcc
     1321 ggtggcgtcg ctcgacctgg tcgtcaccgg tggcgaggcc gtccccgagc agcggctcac
     1381 gaccgacccg acgggccagg ccacggcgac gatcgacacg aagacgacat cggtctcctc
     1441 cgccgactgg cgctgggtca acgtgcggcc cgcgggtccg gagagtgccg acatccaggg
     1501 ggccgcgacc gtggtgatct tcccgtcggc ctacgacctc gcggcgtcgg gcacggtctc
     1561 cgccggtcgg attcgcctct ccggcaaggt gacggcggtc gatctggaca gggccaggcg
     1621 gatgctcgcg gcgggcacct gggacggcga cgcgtcgggc gcacccatcg ccggcgtgaa
     1681 ggtccgggcg accatcacgg agctggtccc gacccgccgg cagattggca cggagtacga
     1741 cttcgtcgag aaggtcgtcc gccccgtcta cgagtacgac tacacgcgca aggtgctcaa
     1801 gacggtgacc gccgtgtccg cccgggacgg gacgatccga tactcggtgc cggtcctgca
     1861 cgccgatcac tcgtatgagg tcgagctggc aacgaccgac cgaagcggcc gcgcccagca
     1921 tcgcaccgtc tgggtggggc cgtccgagcc ggtcacgaac tcggacggaa tccagttcgt
     1981 caccgacgac gggacgccgg cagccggcag cgactacggg atcggcgatc gcgtctcctg
     2041 gcggatcgtc gacgacggtc gcgacctccc gagcggctcc accgatcgat acctgttcgt
     2101 cgtggcacag cgcgggctcc gcgcggcggc ggtcaccgac gccccgcaat tccggcacac
     2161 gtttgccgcc gccgacgcgc cgggaatctt cgtgatgggc gtccggttca cgggcacgac
     2221 ctacgcaccg aaagcggctg cgtgggcaga cttcgacgag tcccaacggg cgatccgcgt
     2281 ggcgatcacg gccgaccgcg agcggtaccg tccgggcgac acggccggac tgtcggtccg
     2341 gacgaccgac gccggcggct cgccggtggc ggcgaccgtc gtcgtccagg ccgtcgacga
     2401 gaagctcttc gcgatgggcg gggcgcacgt cccgcaaccg ctaccggacc tctacgcccg
     2461 ggtcgacagc gggatcgtgc gcctgaccgc gacgcaccag gtgccgagca tggccgggcc
     2521 cgagggcgaa ggcggcgaca cgaccggtgg cggcggcgac ggggatcgaa cggacttccg
     2581 cgacaccctg ctgttccgcg agctccacac ggacgcctcc gggcaggcgt cgaccagcgt
     2641 ccggctgtcc gacgacctca cctcctggca tgtcagcgcg agcgcggtca cgagcgggct
     2701 ggccaccggc gtcggcgagc tgcgcgtccc ggtcggcctg cccttcttcg tcgaggtcac
     2761 cgccgccgac ggctacgtgg ctaccgatcg cccggtgatc caggtgcggg cgttcggcga
     2821 cgccctgcgc gccggcgacc gggtccagtt caccgtggcc gcgccggccc tcggactggc
     2881 cgagacgaag ctcaacggga cggcgttcaa gccggtcagc gtcgcgttgc cggcgttgac
     2941 gctcggcagg ccgtcgatca cggtcggcgc ggtggccgtg tcccgcacgg gcgccgacgg
     3001 caggccactc gccgaccggc tggtccggtc gttcgaggtg gtggcctcac ggttgaccaa
     3061 ggccgcgaca gcctacggac ggcttcaaga cggcctgcca cgggctcccg atgacgccga
     3121 gagcgcgacc tggacgttcg ccgatgcggg ccggggacgg ctcctggcga tcctgtccgg
     3181 ccttgccgac gctccgggcc tccggctcga tcgcgcgatc gcgcagacgg ccgctcggca
     3241 gatcctcgtg gacgccttcg ggcacgaccc ggaggacttc ccgccgaccc ggatcgacct
     3301 gtcggactac ccgatcggga cgccaggcga tgggggcgag ggggccgagg ccggtgtcgg
     3361 cctgctcccg tacggcggcc tggatccatg gctggcggct cgcgtcgcgc tgctggcgcc
     3421 ggacgcgctg gccgcctccg acctgcgcaa tgccctcgag tcgatccgag gtgcatccac
     3481 gaccgggcgg gacctgggga tcgctgcgct ggcgggactc gccgcgctcg gtgaaccggt
     3541 cctcgacgac ctgcgcaccg cttcccggca accgggcctc acgccaaccg agcggatcta
     3601 cctcgccctc ggcttcgagg cgatcggcga cgacccgagc gccgtcgtcc tcgagcgcgg
     3661 gctcctcgaa tcggacggag agcgcctggg cgcgtgggtc
//
LOCUS       DATDDI010000243         1615 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_213234, whole genome shotgun sequence.
ACCESSION   DATDDI010000243 DATDDI010000000
VERSION     DATDDI010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213234"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..225)
                     /locus_tag="VIU37_03460"
     CDS             complement(61..225)
                     /locus_tag="VIU37_03460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013030.1"
                     /translation="MGSRDRPGKEAKKKPKAKLAQPSLSPLAEPPRNVEVIRKPRKER
                     QVVEDDTEEG"
     gene            complement(268..1443)
                     /gene="tgt"
                     /locus_tag="VIU37_03465"
     CDS             complement(268..1443)
                     /gene="tgt"
                     /locus_tag="VIU37_03465"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: protein motif:HMM:NF013835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEY6013031.1"
                     /translation="MSGTFVGAASTFEVVQRPPVDGTTQARLGRLTLTHGVVETPQFM
                     PVGTNATVKALSPDDLREVGASIILSNTYHLYLRPGHERIARLGGLHRFMDWDRPILT
                     DSGGFQVVSLGDLRVVDEDGVTFRSHLDGSTHRFTPEHSIRVQEALGSDVAVAFDQPV
                     FPSSSREVVADATRRTHRWAERSLAAHGRADQALFGIIQGGLDTDLRIESTAFLAALP
                     FDGLCIGGLAGDETPAQRDATLDVVVGQLADDPRPRYLMGLGSPADLLEAVHRGVDLF
                     DSVLPARVARNGQLWIPGGRLNLRNQVHQDDPAPVQEDCPCLLCRRFSRAYLAHLFRA
                     NELLAYRLATCHNLTFTLDFMARIRAAIGAGTFPAELAELRVRAGRLSGGEDAVKSA"
BASE COUNT          243 a          562 c          571 g          239 t
ORIGIN      
        1 cgctcctcat ccgatccatg gaccgccgtc gagcggaccg tgatggcgtc cgccggccga
       61 tcagccttcc tccgtgtcgt cctcgacgac ctggcgctcc ttgcggggct tgcggatcac
      121 ctcgacgttg cggggtggct ccgccagcgg cgacaagctg ggctgggcta gcttggcctt
      181 gggcttcttc ttcgcctctt tgccgggtcg atctcgcgag cccatcgatt cgcctccgcg
      241 tctgactgaa ggttaccgac ccacgcttca cgccgacttg acggcatctt caccgccact
      301 caaccggcca gcgcgaaccc gcaattcggc cagttcggcg gggaaggttc cagccccaat
      361 ggcggctcgg atcctggcca tgaagtctag ggtgaaggtc aggttgtgac aagtcgcgag
      421 acggtacgcg aggagctcgt tggcccggaa cagatgcgcg agataggccc gcgagaaccg
      481 ccggcagagg aggcacggac agtcctcctg gaccggcgcc ggatcgtcct ggtggacctg
      541 gttgcggagg ttgagccggc cgcccgggat ccacagctgg ccgttgcggg cgacccgcgc
      601 cggcagcacc gagtcgaaca ggtcgacacc ccggtgcacg gcctcgagca ggtcggccgg
      661 cgacccaagc cccatcaggt agcgcggtcg cggatcgtcc gcgagctgcc ccacgacgac
      721 atccagggtg gcgtcgcgtt gcgccggcgt ctcgtcgccg gccaggccgc cgatgcacaa
      781 cccgtcgaac gggagggcgg cgaggaacgc cgtcgattcg atccgcaggt cggtgtcgag
      841 gcccccctgg atgatcccga acagcgcctg gtcggcgcgc ccgtgtgcgg ccagcgaccg
      901 ctccgcccag cgatgcgtgc gtcgcgtggc gtcggccacg acctcgcgcg aggagctcgg
      961 gaagaccggc tggtcgaagg ccaccgccac gtcggagccg agcgcctcct ggacacggat
     1021 cgagtgctcc ggcgtgaacc ggtgggtgga tccgtcgagg tggctccgga acgtgacgcc
     1081 gtcttcgtcc acgacgcgca ggtcgccgag cgacacgacc tggaagccac ccgaatccgt
     1141 gaggatcggc cggtcccagt ccatgaaccg atgcagcccg ccgagccggg cgatccgctc
     1201 gtgccccggc cgcaggtaca ggtggtaggt gttcgacagg atgatcgagg cgccgacctc
     1261 gcgcaggtcg tcgggcgaca gcgccttgac cgtggcattg gtcccgacgg gcatgaactg
     1321 cggcgtctcg accacgccgt gggtgagcgt caatcgcccg agccgggcct gcgtcgtccc
     1381 gtccacgggc ggacgctgga cgacctcgaa cgtcgacgcc gctccgacga aggtgccgct
     1441 cacgcgtccg gctgcgccgg ctcgtcccag aggccgacca tgcccgggtc ggatcttcgc
     1501 ggcggcggga tctcgtaacc gaggcccgac aggtgcgccc gggcggcgtc ggtggcgatc
     1561 cgacccgatg gcgtccggtc gatgaagccc aggcggagca ggaacggctc gtaga
//
LOCUS       DATDDI010000244         2337 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_358901, whole genome shotgun sequence.
ACCESSION   DATDDI010000244 DATDDI010000000
VERSION     DATDDI010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358901"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..648
                     /locus_tag="VIU37_03470"
     CDS             <1..648
                     /locus_tag="VIU37_03470"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY6013032.1"
                     /translation="ADVGAEAVESAGLAGMRFVLRTDSGRRPVAIPTLGRLSVHNALA
                     GAAVGQVAGLSLDEIVAGLEAGWSAPHRVQVVRAGGVTVIDDTYNASPRSVVAALDLL
                     AGLPGRRGAVLGEMLELGDLTEEGHHVVGEAAARTVDWLVVVGEAAAGIARGALAGGM
                     EPGRVTLVPDADAAREHLVPRLRDGDVVLVKASRGIELDRLVDGLVASADGRSVR"
     gene            645..1619
                     /gene="mraY"
                     /locus_tag="VIU37_03475"
     CDS             645..1619
                     /gene="mraY"
                     /locus_tag="VIU37_03475"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY6013033.1"
                     /translation="MTELIQGLLLAFAIIVILMAPYIRLLHAVGFGKRIRREGPESHY
                     VKEGTPTMGGLLIVVVVLGIYLFFRGSPDASTFAPIAALATVGLLGAFDDYLNARTGE
                     GIRARQKLIWLTVVAFVAAWQIQNTYDITAIAVPFVGAVSIDPRVYVLFGAFAIIAAA
                     NGVNITDGLDGLSGGTVAIAFVAYLLIALLNEPAQPNLALLCALIIGALLGFLWFNVH
                     PAQIFIGDSGALSLGATLAVTALITGQILVLPLIGIIFVIETSSVILQIGWYRVSGGR
                     RLFRMSPIHHHFELGGWDEEKITIRFWIVGILAAMLGVTLFLASLDRL"
     gene            1628..>2337
                     /locus_tag="VIU37_03480"
     CDS             1628..>2337
                     /locus_tag="VIU37_03480"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEY6013034.1"
                     /translation="MHQSGGPLDLDALDQAAIRAGALRGRPVTVLGLARSGIALARFL
                     VDAGAQVTVYDGRNAGELADAIDALGGRDVQLRLGPAVEPASSWAGAELVATSPSINP
                     DYPTTEPRLRTALLALRSARADGDPTAPPLVSEADLFLRLCPAPTVGVTGTKGKTTTA
                     SLAATILAADPTHPAVLGGNIGIPLVERLPELTPAHRVVIELSELQLPTLSRGTTVAV
                     CTNVSSDHLDRHGTLEAYR"
BASE COUNT          283 a          867 c          827 g          360 t
ORIGIN      
        1 gcggacgtcg gggccgaggc ggtcgagtcg gcggggcttg ccggcatgcg cttcgtgctg
       61 cggacggatt ccggtcgtcg cccggtggcc atccccaccc ttgggcgcct gtcggtccac
      121 aacgcgctcg cgggcgcggc ggtcggccag gtcgcgggcc tgtcgctcga cgagatcgtg
      181 gccgggctcg aggccggctg gtccgctccg caccgggtgc aggtcgtccg ggccggcggc
      241 gtgaccgtca tcgatgacac gtacaacgcc tcgccccgct cggtggtcgc ggcgctggac
      301 ctgctcgccg ggctgcccgg ccggcgcggc gcggtactcg gcgaaatgct cgagctcggc
      361 gacctcaccg aggaggggca ccacgtcgtc ggcgaggccg ccgcgcggac cgtcgactgg
      421 ctcgtggtcg tcggcgaggc ggccgcgggg atcgcccggg gcgccctggc tggcgggatg
      481 gagcccggac gggtcacgtt ggtgcccgac gcggacgccg cgcgcgagca cctggtcccg
      541 cgactgcgcg acggcgacgt cgtccttgtc aaggcgtcgc gcgggatcga gctcgaccgg
      601 ctggtcgacg ggctggtcgc ctcggccgat gggcggtccg tccgatgacc gagctgatcc
      661 agggcctgct gctcgccttc gccatcatcg tgatcctgat ggcgccgtac atccggctcc
      721 tccacgcggt ggggttcggc aagcggattc ggcgcgaggg acccgagagc cactacgtca
      781 aggagggaac gccgacgatg ggcggcctcc tgatcgtggt cgtcgtcctc gggatctacc
      841 tcttcttccg cgggagtccc gacgcgtcga ctttcgcgcc gatcgccgcg ctcgcgacgg
      901 tcgggctgct gggcgccttc gacgactacc tcaacgcgcg gacgggcgag ggcatccggg
      961 cccgccagaa gctcatctgg ctgaccgtgg tcgccttcgt ggcggcctgg cagatccaga
     1021 acacgtacga catcaccgcg atcgcggtcc cgttcgtcgg cgcggtctcg atcgacccgc
     1081 gggtctacgt cctgttcggc gcgttcgcca tcatcgccgc ggccaacggc gtcaatatca
     1141 ccgacggcct cgacgggctg tccgggggaa cggtcgcgat cgccttcgtg gcctacctcc
     1201 tgatcgccct gctcaacgaa ccggcccagc cgaacctcgc cctgctgtgc gcgctcatca
     1261 tcggcgccct gctcggcttc ctctggttca acgtccaccc ggcgcagatc ttcatcggcg
     1321 actctggcgc gctgtcgctc ggggcgacgc tcgcggtcac cgcgctgatc accggccaga
     1381 tcctggtgct gccactgatc ggcatcatct tcgtgatcga gacctcgtcg gtcatcctcc
     1441 agatcggctg gtaccgggtc agcggcggcc ggcggctctt ccggatgagc ccgatccacc
     1501 accacttcga gctgggcggc tgggacgagg agaagatcac gatccgcttc tggatcgtgg
     1561 gcatcctcgc cgcgatgctc ggggtcacgc tgttcctggc ctcgctggac cggttgtgag
     1621 gctcgacgtg caccagtccg gcggcccgct cgacctcgac gcgctcgacc aggccgcgat
     1681 ccgggccggc gcgctccgcg ggcgacccgt gacggtcctg ggcctcgccc gcagcgggat
     1741 cgccctggcc cgcttcctcg tcgatgccgg ggcgcaggtg accgtctacg acgggcggaa
     1801 cgccggggag ctggccgacg cgatcgacgc gctcggcggc cgggacgtgc agctgcggct
     1861 cggccccgcc gtcgagccgg cgtcgagctg ggccggcgcc gagctggtgg ccacgtcgcc
     1921 ttcgatcaac cccgactatc cgaccaccga accgcgactg cggaccgccc tgctggcgct
     1981 ccgttcggcc agggcagacg gcgatccgac ggcaccgccg ctcgtctccg aggcggacct
     2041 cttcctccgg ctctgcccgg cgccgaccgt cggcgtcacc ggcaccaagg gcaagacgac
     2101 gaccgcctcg ctggccgcga ccatcctggc ggccgacccg acgcaccccg cggtcctcgg
     2161 cggcaacatc gggatcccgc tcgtggagcg gctgcccgag ctgacgcccg cgcaccgggt
     2221 ggtcatcgag ctgtcggagc tccagctgcc gacgctgtcg cgcgggacca ccgtggcggt
     2281 ctgcaccaac gtcagctcgg accacctcga ccgccacggg acgctggagg cctaccg
//
LOCUS       DATDDI010000245         1652 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_650164, whole genome shotgun sequence.
ACCESSION   DATDDI010000245 DATDDI010000000
VERSION     DATDDI010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650164"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VIU37_03485"
     CDS             <1..696
                     /locus_tag="VIU37_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014152511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013035.1"
                     /translation="MKTILVVDDEPKIAQLARDYLEHAGFAVLTAGDGPAALTAVRQR
                     HPDLVVLDLGLPGLDGLDVTRQLRRDSTIPIVMLTARDDELDKLLGLELGADDYLTKP
                     FSPRELVARVRAVLRRSETATAPSDMIRAGDVVLDVPRMRAEVAGRTVELTATEFGLL
                     RTLAASPGRIFTRSQLLDEIRGVAFESYERAIDSHIKNLRRKLEPDPREPRYVLTVYG
                     VGYRFADDRPARG"
     gene            693..>1652
                     /locus_tag="VIU37_03490"
     CDS             693..>1652
                     /locus_tag="VIU37_03490"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY6013036.1"
                     /translation="MTPPEVPGVTPGAGPERPERGDQPPGGGYGGPPWAWRADHGRYG
                     PWERRDPRYREMRRRARLYRRAQAQGLPWHRRQGFGCIFAILFLIVIGSIVTATATIL
                     SRLGPIPVVIAVLAIAGIATALLRGVAGAARDLDAMLAATRRVEEGDYGVRLRRTRSD
                     LAPIQELARGFDTMTARLEADEEQRRTLLADVSHELRTPLAVITGNLEAIIDGVYPPD
                     PAHLTPILDETRVMERLIEDLRTVTLSEAGTLALHPEPTDPDILIAEVLHVFAPGAAA
                     AGVTLVSNSADDMPILDIDPVRIREVLSNLVANALRHTPAGGSI"
BASE COUNT          235 a          622 c          576 g          219 t
ORIGIN      
        1 atgaagacca tcctcgtcgt cgacgatgaa ccgaagatcg cgcagctcgc ccgcgactac
       61 ctcgagcacg ccgggttcgc ggtcctgacc gcgggcgatg ggccggccgc cctgaccgcg
      121 gtccggcagc gacacccgga cctggtcgtc ctcgacctcg ggctgcccgg gctcgacggg
      181 ctggatgtca cgcgccagct gcgccgcgac tcgacgatcc cgatcgtcat gctcactgcg
      241 cgcgacgacg agctcgacaa gctgctcggg ctcgagctgg gtgccgacga ctacctgacc
      301 aagccgttca gcccgcgcga gctggtcgcg cgcgtgcgtg cggtcctgcg gcgatcggag
      361 accgcgaccg caccgagcga catgatccgc gccggcgacg tggtcctgga cgtgccgcgg
      421 atgcgggccg aggtggccgg caggaccgtg gagctgaccg cgacggagtt cgggctgctc
      481 aggacgctcg cggcgagccc cggtcgcatc ttcacccgct cgcagctcct cgacgagatc
      541 cgcggcgtcg ccttcgagtc gtacgagcgc gcgatcgact cacacatcaa gaacctccgc
      601 cgcaagctgg agcccgaccc gcgcgagcca cgctacgtcc tgaccgtata cggggtcggc
      661 taccggttcg ccgacgatcg tccggcgcgg ggatgacgcc gccggaggtg ccgggagtca
      721 cgccgggcgc cgggccggag cgcccggagc gcggcgacca gccaccgggc ggcgggtacg
      781 ggggaccgcc gtgggcgtgg cgggccgatc acggccggta cgggccgtgg gaacggcgcg
      841 acccgcgcta tcgcgagatg cggcggcggg ctcgcctgta ccgccgcgca caggcgcagg
      901 gcctcccttg gcatcgacgg cagggcttcg gctgcatctt cgcgatcctg ttcctgatcg
      961 tcatcggctc gatcgtgacg gccacggcca cgatcctgtc ccgcctcggc ccgatcccgg
     1021 tggtcatcgc cgtgctcgcg atcgccggga tcgccaccgc actcctgcgc ggcgtggccg
     1081 gcgccgcccg cgatctcgac gcgatgctcg cggccacccg gcgggtcgag gaaggcgact
     1141 acggagtccg gctgcgacgg acgcggtcag atctcgcccc gatccaggag ctcgcccgcg
     1201 ggttcgacac gatgaccgcc cggctcgagg ccgacgagga gcagcgacgc acgctcctgg
     1261 ccgacgtcag ccacgagctg cggacgccgc tggcggtcat caccggcaac ctcgaggcga
     1321 tcatcgacgg cgtctacccg ccggacccgg cgcacctcac cccgatcctc gacgagacgc
     1381 gggtcatgga acggctgatc gaggacctcc gaaccgtcac gctgtcggag gccggcacgc
     1441 tcgccctcca tcccgagccg accgatccgg acatcctgat cgcggaggtg ctccacgtct
     1501 tcgctcccgg cgcggccgcc gcgggcgtca cgctcgtgtc gaactcggcc gacgacatgc
     1561 cgattctcga catcgacccg gtccggatcc gcgaggtgct gtccaacctc gtggcgaacg
     1621 cgctccggca cacgccggcc ggcggcagca tc
//
LOCUS       DATDDI010000246         4028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_46788, whole genome shotgun sequence.
ACCESSION   DATDDI010000246 DATDDI010000000
VERSION     DATDDI010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46788"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..954)
                     /locus_tag="VIU37_03495"
     CDS             complement(<1..954)
                     /locus_tag="VIU37_03495"
                     /inference="COORDINATES: protein motif:HMM:NF014065.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ornithine
                     acetyltransferase/N-acetylglutamate synthase"
                     /protein_id="HEY6013037.1"
                     /translation="MTATVASLVPASSADLPPVERRAAMPAGFRAGGLAAGIKASGRP
                     DLAVIVATGGPAAAAAVFTPNAFAAAPVRLSKAHLAASSGDARGGFGWAEAIVSTSGS
                     ANAATGAAGDADQLEIARLLAAATGVEVGRTLHLSTGVIGTRLPLDRVAAGLDSIVPT
                     LSGDHGAIEQAAIALRTTDSVTKIATTSVNLPSPDGATVAVTVSGMAKGVGMIHPRMA
                     TMLSIVLTDAAASPETLWGLLRPAAARTWNQLSVDGDTSTNDTVFVLASGASGAVPVE
                     PGSAAAARLGAAIEAIARDLARQQAADGEGASTLITAAVTGA"
     gene            complement(951..2120)
                     /gene="argC"
                     /locus_tag="VIU37_03500"
     CDS             complement(951..2120)
                     /gene="argC"
                     /locus_tag="VIU37_03500"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEY6013038.1"
                     /translation="MTATQPATAASAYPGTADPTAGVLPRSLRGQVQGGGRRRVRVGI
                     IGATGYVGAELIRLLARHPDVELVGLAGRGRDHDPIAGIHPHLGGTRLTVHAELPPAD
                     AVFLALPHGAAAAIVPDLLASGTAIIDQGPDFRLRNPADYPAWYGFDHPRPDLLEHAV
                     YGLPELHREALAALVDAPVAIVGAPGCYPTATLLALAPLVRAGLVGDLVVDAKSGVSG
                     AGREAKPDLQFGEVNESVKAYGLGGHRHVAEIEQELESIHAGAGLPADANPGIVAVDF
                     LPHLIPMTRGILSTCHVRPSRPVSQAELDALYADAYAGEPFVTVVAAPPATKHVTGSN
                     QVLVHVRLDERTGRIIAIGVEDNLVKGAAGQAVQAFNLVHGLPETAGLEQLPLAP"
     gene            complement(2188..2721)
                     /locus_tag="VIU37_03505"
     CDS             complement(2188..2721)
                     /locus_tag="VIU37_03505"
                     /inference="COORDINATES: protein motif:HMM:NF025698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4395 domain-containing protein"
                     /protein_id="HEY6013039.1"
                     /translation="MPSAVPTDAEVRLPRARMIDPRGHRFGAGVSAVVLVAAFILDAP
                     VLVAAALLSIGTSAAFGLRWSIYGAAWRRIVRLLSLPPTTPEHEYPPRFAQTLGSVVL
                     IASLLAFVAGASPAGWALAFAVAGLQSLLAVTGYCLGCRLYFLRWWVPDLLTRVWTRG
                     RAGTPSASFATEPIRYR"
     gene            complement(2810..3307)
                     /locus_tag="VIU37_03510"
     CDS             complement(2810..3307)
                     /locus_tag="VIU37_03510"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY6013040.1"
                     /translation="MSTIRTTVLEHVGDSDFRSSTGTGRTIAFGAVETGALSPVETLL
                     AALGACTAMDVISIAGKKRQVIDDYRIHLRGDQRDEYPQVYTEIDIVHEVTGRDISEA
                     AIRRSIELSATKYCPVSAMLSAGATVVHHRYRIHSTGASPYDAEGEVIATGPYARPDV
                     VAGPS"
     gene            complement(3304..>4028)
                     /locus_tag="VIU37_03515"
     CDS             complement(3304..>4028)
                     /locus_tag="VIU37_03515"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013041.1"
                     /translation="LVDVSFEARPGELVALVGPSGAGKTTTTYLIPRLYDVDGGAVEI
                     DDVDVRRIRLKSLGEIIGVVTQETYLFHASVRANLLYARPEATDAELEAATRAAAIHD
                     RIQELPDGLDTIVGERGYKLSGGEKQRIAIARVLLKDPRILILDEATSALDTVSERLI
                     QAAFERLMEGRTTIAIAHRLSTILRADRILVYDRGRIVERGTHGELIALDGLYARLYR
                     EQFLAERPSEGVAAAEPAEERV"
BASE COUNT          565 a         1382 c         1549 g          532 t
ORIGIN      
        1 ggcaccggtc acggcggcgg tgatgagtgt cgaggccccc tccccgtcgg ccgcctgctg
       61 gcgcgcgagg tcccgggcga tcgcctcgat cgccgccccc agccgcgccg ccgcggcgga
      121 cccgggctcg accggtacgg ctcccgaggc ccccgacgcg agcacgaaga cggtgtcgtt
      181 ggtgctggtg tcaccgtcca cagacagctg gttccaggtt cgtgccgcgg ccgggcggag
      241 caggccccag agcgtctcgg gcgaggcggc cgcatccgtc aggacgatcg acagcatcgt
      301 ggccatccgc gggtggatca tgccgacgcc cttggccatg ccgctgacgg tgacggcgac
      361 ggtcgccccg tcgggtgacg gcaggttgac gctcgtggtc gcgatcttgg tgaccgaatc
      421 ggtcgtccgc agggcgatcg cggcctgttc gatcgcgccg tggtcgccgg acagcgtggg
      481 aacgatcgag tcgagccctg ccgccacccg gtcgagcggg aggcgggtgc cgatgacgcc
      541 ggtcgacagg tgcagggtcc ggccgacctc gacccccgtc gccgccgcga gcaggcgcgc
      601 gatctcgagc tggtccgcgt cgccggcggc gcccgtggcc gcgttggcgc tgccgctcgt
      661 cgacacgatc gcctcggccc agccgaagcc gccccgggcg tcgcccgagc tcgccgccag
      721 gtgcgccttc gacaggcgga ccggcgcggc cgcgaacgcg ttcggggtga acacggcagc
      781 cgcggcggcc ggacctccgg tcgcgacgat caccgcgaga tcgggccggc ccgacgcctt
      841 gatcccggcc gcgagcccgc cggcccgaaa gccggcaggc atcgcggcac gtcgctcgac
      901 tggtgggagg tccgccgagg acgccgggac gagggatgcg acagtggcgg tcatggggcc
      961 agcggaagtt gttccaggcc ggcggtctcg ggcaggccgt ggacgaggtt gaacgcctgc
     1021 acggcctggc cggccgcgcc cttgacgagg ttgtcctcga cgccgatcgc gatgatccgg
     1081 cccgtccgtt cgtcgagccg cacgtggacg agcacctggt tgctgccggt cacgtgcttg
     1141 gtcgccggcg gtgcggccac caccgtcacg aacggctcac cggcgtaggc gtccgcgtag
     1201 agcgcgtcga gctcggcctg gctgaccggc cggctcggcc ggacgtggca ggtcgacagg
     1261 attccgcggg tcatcggaat gaggtggggg aggaagtcga ccgcgacgat gccggggttg
     1321 gcgtcggcag gcagccccgc gcccgcatgg atcgattcga gctcctgctc gatctcggcg
     1381 acgtgtcgat gcccacccag tccgtacgcc ttgacgctct cgttgacctc gccgaactgg
     1441 aggtcgggct tggcttcccg accggcgccg gacacgccgc tcttggcatc gaccacgaga
     1501 tcgcccacca ggcccgcgcg gacgaggggc gcgagcgcga ggagcgtcgc cgtcggatag
     1561 cagcccggcg cgccgacgat cgcgaccggc gcgtcgacca gggccgcaag cgcctcccgg
     1621 tggagctccg gcaggccgta cacggcatgc tccaacaggt ccggccgcgg gtgatcgaag
     1681 ccataccagg cggggtagtc ggcggggttc cgcaggcgga agtcggggcc ctggtcgatg
     1741 atcgcggtgc ccgacgccag caggtccggg acgatggctg ccgcggcgcc atgggggagt
     1801 gccaggaaga ccgcgtcggc gggcgggagc tcggcgtgga ccgtcaggcg ggttccgccg
     1861 aggtgcgggt ggatgccggc gatcgggtcg tggtcgcggc cccggccggc gagcccgacg
     1921 agctcgacgt cggggtggcg ggcgaggagc cggatcagct cggcgccgac gtagccggtc
     1981 gcgccgatga tcccgactcg tacccgtcgg cggccgcctc cctggacctg accgcgcagg
     2041 gagcgcggca ggacgcccgc ggtcggatcg gcggtgcccg ggtacgcgga ggcagcggtg
     2101 gccggctggg tggcggtcat gggaggatga ctatacaacg cgactgcata gtcatgcaac
     2161 ccgcctgccc ggacccgggc tcgcggatca gcggtagcgg atcggctccg tcgcgaacga
     2221 cgccgacggc gtcccggcgc gaccgcgcgt ccagacacgg gtcagcagat ccgggaccca
     2281 ccagcgaagg aagtagaggc ggcagccgag gcagtagccg gtcacggcca gcaggctctg
     2341 cagcccggcg acggcgaagg cgagggccca gccggcggga ctcgcccctg cgacgaaggc
     2401 gaggagcgag gcgatgagga ccacgctgcc gagcgtctgg gcgaagcgcg gcggatactc
     2461 gtgctcgggc gtcgtcggcg gcagcgacag gagccggacg atccggcgcc aggccgcccc
     2521 gtagatcgac cagcgcaatc cgaaggcggc gctcgtcccg atggagagca gggccgcggc
     2581 gaccaggacc ggtgcgtcga ggatgaaggc cgccaccagc acgaccgccg acacgccggc
     2641 gccgaaacga tggccacgcg ggtcgatcat gcgcgcccgg ggcaggcgga cttcggcatc
     2701 ggtggggacg gcactcggca tcggaagctc ctggggcggg acgacaggcc ggcaggatag
     2761 cacagaagtc cgaccaaact agtcgggtat cggcccgacg gcgatcctgc tagctcgggc
     2821 ctgcgaccac gtccggccgg gcgtagggac ccgtggcgat gacctcgccc tccgcgtcgt
     2881 acgggctcgc gccggtcgag tggattcggt agcgatggtg gaccacggtg gcgccggccg
     2941 acagcatggc gctgaccggg cagtacttcg tcgccgacag ctcgatcgag cggcggatgg
     3001 ccgcctcgga gatgtcccgg ccggtgacct cgtggacgat gtcgatctcg gtgtagacct
     3061 gcgggtactc gtcgcgctgg tcgccgcgca ggtggatccg gtagtcgtcg atcacctggc
     3121 gcttcttgcc ggcgatcgag atcacgtcca tcgcggtgca ggcgccgagg gcggcgagga
     3181 gggtctcgac cgggctcaat gcgcccgtct cgaccgcgcc gaaggcgatc gtgcgcccgg
     3241 tgccggtgga cgaccggaag tccgagtctc cgacgtgctc gaggacggtg gttcggatgg
     3301 tgctcacacg cgctcctccg ccggctcggc ggccgcgacc ccctcggacg gtcgttcagc
     3361 caggaactgc tcgcggtaca gccgggcgta gaggccgtcg agcgcgatga gctcgccgtg
     3421 ggtgccgcgc tccacgatcc ggccccggtc gtagacgagg atccggtcgg cgcgaaggat
     3481 cgtcgacagc cggtgggcga tggcgatcgt ggtgcggccc tccatcaggc gctcgaacgc
     3541 ggcctggatc aggcgctcgg agacggtgtc gagcgccgag gtggcctcgt cgaggatgag
     3601 gatacgcggg tccttgagca ggacgcgggc gatcgcgatt cgctgcttct cgccacccga
     3661 cagcttgtag ccgcgctcgc cgacgatcgt gtcgagcccg tcgggcagct cctggatccg
     3721 gtcgtggatg gccgccgcgc gggtcgcggc ctcgagctcc gcgtcggtcg cctcgggccg
     3781 ggcgtacagc aggttcgccc gcaccgaggc atggaacagg taggtctcct gggtcacgac
     3841 cccgatgatc tcgcccagcg acttgagccg gatccgtcgg acgtcgacgt cgtcgatctc
     3901 gaccgcgccg ccgtccacgt cgtacagccg cgggatgagg taggtggtgg tcgtcttccc
     3961 ggccccggac ggcccgacga gcgccacgag ctcgcccgga cgggcctcga aggagacgtc
     4021 cacgagcc
//
LOCUS       DATDDI010000247         2267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_358933, whole genome shotgun sequence.
ACCESSION   DATDDI010000247 DATDDI010000000
VERSION     DATDDI010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358933"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VIU37_03520"
     CDS             <1..400
                     /locus_tag="VIU37_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013042.1"
                     /translation="LGEVDAGSLSTAITVPANQSGTVHLKDLNTSTDPFVCPAGYICQ
                     SDYSIAAIPSFSGPYLEWTLTAIVPSTYRLQQAFVAHYFDDGSLDVLLLNKQKDACKT
                     ANTVPCATFSQTGNVVTIYVRTKSNGGMRF"
     gene            complement(397..>2267)
                     /locus_tag="VIU37_03525"
     CDS             complement(397..>2267)
                     /locus_tag="VIU37_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013043.1"
                     /translation="LGGLEVPVRQRIVSAAEGNPLYVEQITAMLVETGAIRREGKAWV
                     ATGSHEIQIPPTVQALVAARLDALRNEERQVIDPASVIGLGFAVDAVVSLVPEDLAPL
                     VPLRLHDLTAKQFVRPTSASEEDFYRFGHSVIKDAAYRSLLKRTRADLHQRFVDWAEP
                     VNRERGREVEFEEILGYHLEQAYRYRGELGPVDDAAREVGRRAATKLASAGRRAFGRG
                     DAAAAANLLGRAASLLPEADPVRIELLPEVAEAQIEQGAFQEAQAALDEAMELALRIA
                     DARLAGRATLVRYQLLFSTSGSVGEVEPAIAEVRAVMAEFERTADVAGQARAWRLLSV
                     IDGTAGRYDRAADAAAQVVALAGRVRDTRLAARGAISYSYATLHGSTPVAEALRRSRE
                     YLEYVRTDRNAEAIVLGVLAQLDAMEGRFDEARASAARSREIVSELGASVTAASTSLE
                     TSRVERLAGNPRAGEEALRRDYHVLEGLGETYFRSTIAALLGDNLWNQGKHEEAIVFA
                     RIAAEIADEDDVLSQTAWRTVEARSRALAGHQDEAIALAREAVARAAGTVDIELHADA
                     LVDLAEVMRLVGRVQDEGPPLREALALYERKGDVVLAGRVRERLAAIPGEPVVGAP"
BASE COUNT          316 a          858 c          761 g          332 t
ORIGIN      
        1 gctcggcgag gtcgatgcgg gcagtctgtc gacggcgatc acggtcccgg ccaaccagtc
       61 gggcacggtc cacctcaagg acctcaacac cagcaccgat ccgttcgtct gccccgccgg
      121 ctacatctgc cagtccgact actcgatcgc cgccatcccg tcgttctcgg ggccgtacct
      181 cgagtggacg ctgacggcca tcgtgccctc gacctacagg ctccagcagg cgttcgtcgc
      241 gcactacttc gacgacggct cgctcgacgt cctcctcctg aacaagcaga aggacgcgtg
      301 caagaccgcc aacaccgtgc cctgcgcgac cttcagccag accggcaacg tggtcacgat
      361 ctacgtccgc accaagtcca acggcgggat gcgcttctag ggcgccccga cgaccggctc
      421 gcccgggatc gccgcgaggc gctcccggac acgaccggcc aggacgacat ctccttttcg
      481 ctcgtacagg gcaagggcct ctcgcaaggg aggcccttcg tcctgcacgc ggccgaccag
      541 tcgcatcacc tcggcgaggt cgacgagggc atcggcgtgg agctcgatgt cgacggttcc
      601 cgcggcccgg gccaccgcct cgcgagcgag ggcgatcgcc tcgtcctggt gaccggccag
      661 ggcccgtgat cgcgcctcga ccgtccgcca ggccgtctgg ctgaggacat cgtcctcgtc
      721 ggcgatctcg gcggcgatcc gggcgaagac gatcgcctcc tcgtgcttgc cctggttcca
      781 gaggttgtcg cccagcaacg cggcgatcgt cgaccggaag tacgtctcgc cgagcccttc
      841 gagcacgtgg tagtcgcggc gcagcgcctc ctcgcccgcg cgagggttcc cggccagccg
      901 ctccacgcgc gacgtctcga gcgacgtcga ggcagccgtc acgctggctc ccagctcgga
      961 cacgatctca cggcttcgcg cggcgctcgc ccgcgcctcg tcgaaccgac cctccatggc
     1021 gtcgagctga gccaggaccc cgagcacgat cgcctcggca ttccggtcgg tcctgacgta
     1081 ctcgaggtac tcgcggctgc gccgaagggc ctcggcgacg ggcgtggatc cgtgcagggt
     1141 ggcgtacgag tacgagatcg cgccgcgcgc cgcgaggcgc gtatcccgga ctcttcccgc
     1201 cagtgccacg acctgcgctg ccgcgtcggc ggctcggtcg tagcggcctg ccgtcccgtc
     1261 gatcacgctg agcagcctcc acgcgcgcgc ctgccccgcg acgtcggcgg tccgctcgaa
     1321 ctccgccatc accgcccgga cctcggcgat ggccggctcc acctccccga ccgatcccga
     1381 ggtgctgaac agcagctggt acctgaccag cgtggcgcgg ccggccagcc tcgcgtcggc
     1441 gatccgaagg gcgagctcca tcgcctcgtc cagcgcggcc tgggcttcct ggaaggcacc
     1501 ctgctcgatc tgcgcctccg ccacctccgg aaggagctcg atcctgaccg ggtccgcctc
     1561 cgggagcagg ctcgcggccc ggccgagcag gttcgccgcc gccgccgcat cgccgcggcc
     1621 gaaggcgcgc cggcccgccg aggcgagctt cgtggccgcc cggcgtccca cctcgcgtgc
     1681 tgcgtcgtcg accgggccga gctcgccccg gtaccggtag gcctgctcga ggtgatagcc
     1741 gaggatctcc tcgaactcga cctcgcggcc acgctcgcgg ttgaccggtt cggcccagtc
     1801 gacgaaccgc tggtggaggt ccgcgcgggt ccgcttgagc aggctgcgat aggccgcgtc
     1861 cttgatgacc gaatggccga accggtagaa gtcctcctcg gaggccgagg tcgggcggac
     1921 gaactgcttg gcggtcaggt cgtggaggcg cagcgggacg agcggcgcga ggtcctccgg
     1981 gacgaggctg acgacggcgt cgacggcgaa accgaggccg atcacggatg ccggatcgat
     2041 gacctggcgc tcctcgttcc tgagcgcgtc gaggcgggcg gcgacgagcg cctggacggt
     2101 cggcgggatc tggatctcgt gggagccggt ggccacccag gccttcccct cccgccggat
     2161 cgcgccggtc tcgacgagca tggcggtgat ctgctccacg tacagcgggt tcccctccgc
     2221 ggcgctcacg atccgctgcc gaaccgggac ctccaggccg cccagca
//
LOCUS       DATDDI010000248         1805 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_275676, whole genome shotgun sequence.
ACCESSION   DATDDI010000248 DATDDI010000000
VERSION     DATDDI010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275676"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1115)
                     /locus_tag="VIU37_03530"
     CDS             complement(<1..1115)
                     /locus_tag="VIU37_03530"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6013044.1"
                     /translation="MATILGEGTIQELRESVRGEVVTPSDAQYDEARAVWNGMIDKRP
                     ALIVRCSGVADVLAAIEFARSQDLELAVRGGGHSLPGFSTSDGGIVVDLSPMKGIRVD
                     PDGMRVVAQAGVTWRELDHETQAFGLALTGGLISSTGIAGFALGGGIGWLMRKHGLTC
                     DNLVAADVVTADGRLVRASETENTELYWGLRGGGGNFGVVTSFEFRLHRVGPTVLAGP
                     IFFPGDQAAQILRGYRAYTASLPDEMTTLVNLTTAPPVPFLPADVHGKKVVAVVGVYA
                     GAPDAGRDLAAGLRSLGTPIADLLGPMPYTTMQSLLDPLFGPGARNHFKSGYLDALSD
                     DAIEKLVRFHGPAISPTSEIHVHHMGGAVARVPDDATA"
     gene            complement(1176..1673)
                     /locus_tag="VIU37_03535"
     CDS             complement(1176..1673)
                     /locus_tag="VIU37_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013045.1"
                     /translation="MGLHRLVRAMSLAAIAGILIAAPALAGTRVEDGYYNGRTVRFIQ
                     PAVFSADPNGGTFACFGLGPDLTRANRSAVTPTLYVILNDFATQDHCDGDATALRHDH
                     VLSTVPGQPDYTGSWTLILAVPGPSFDASDMPFTSVAEVQAGVAAGELVLQDPGVTMI
                     APVVH"
BASE COUNT          276 a          616 c          635 g          278 t
ORIGIN      
        1 gccgtcgcgt cgtcgggaac gcgtgccacc gcaccgccca tgtggtgcac atggatctcg
       61 gacgtgggcg agatggccgg tccgtggaag cggacgagct tctcgatcgc gtcgtcggac
      121 aaggcgtcca ggtagcccga cttgaagtgg ttgcgcgccc ccggcccgaa gagcggatcg
      181 agcagcgatt gcatcgtcgt gtacggcatc gggccgagga gatcggcgat cggcgttccc
      241 aggctgcgca gtccggcagc gaggtcccgg cccgcatccg gcgccccggc gtagacgccg
      301 acgaccgcga cgaccttctt gccgtggacg tcggccggaa ggaacgggac cggcggcgcg
      361 gtcgtgaggt tgacgagcgt cgtcatctcg tccggcaggc tggccgtgta cgcccggtag
      421 ccacgcagga tctgggcggc ctgatcgccg gggaagaaga tgggtccggc caggacggtg
      481 ggcccgaccc ggtggaggcg gaactcgaac gaggtcacga ccccgaagtt cccaccgccg
      541 ccgcggaggc cccagtacag ctcggtgttc tccgtctccg aggcgcggac cagccggcca
      601 tcggcggtca cgacgtccgc cgcgacgagg ttgtcgcagg tcaggccgtg cttgcgcatc
      661 agccagccga tcccgccgcc cagggcgaac ccggcgatcc ccgtcgacga gatgagcccg
      721 ccggtcaggg ccaggccgaa ggcctgggtc tcgtggtcga gctcgcgcca cgtgacaccg
      781 gcctgggcga cgacgcgcat cccgtccggg tccacccgga tccccttcat cggcgagagg
      841 tcgacgacga tgccaccgtc ggaggtcgag aagcccggaa ggctgtgacc gccgccgcgg
      901 acggcgagct cgagatcctg gctccgcgcg aactcgatgg ccgccagcac gtccgcgaca
      961 ccggagcacc ggacgatgag tgccggacgc ttgtcgatca tcccgttcca gacggctcgc
     1021 gcctcgtcgt actgcgcgtc cgagggcgtg acgacctcgc cgcggacgct ctcccgcagc
     1081 tcctggatcg tgccctctcc gagaatggtt gccacgttga ctcctttgtg tggtcagctg
     1141 ggtcgattag gggtgtttcc tcatcggagc cggcgctagt gcaccaccgg cgcgatcatc
     1201 gtgacaccgg ggtcctgcag gacgagctct ccggccgcca cgcccgcctg gacctcggca
     1261 acgctcgtga acggcatgtc ggacgcgtcg aacgagggtc ccgggaccgc caggatgagc
     1321 gtccaggaac cggtgtagtc cggctggccg ggcacggtcg agagcacgtg atcgtggcgc
     1381 agcgccgtgg cgtcgccatc gcagtgatcc tgggtggcga agtcattgag gatcacgtac
     1441 agcgtcggcg tgacggctga gcggttggca cgcgtgagat cggggcccag cccgaagcag
     1501 gcgaacgtgc cgccgttcgg gtcggcgctg aagaccgccg gctggatgaa ccgcacggtc
     1561 cgaccgttgt agtagccgtc ctcgacacgc gttccggcca gggccggcgc cgcgatcagg
     1621 atgcccgcga tcgctgccag cgacatcgct cgaaccagtc gatggagtcc cattgttcct
     1681 gctcctgttc catctcagcg acgctgcatg acgtcgtcgg acggaccttc gcggcaccgt
     1741 cttaatctgc ccgtagtcgg gtcttaatcc gtcgcgccca gctcgagaca ggccgtctcg
     1801 ccctg
//
LOCUS       DATDDI010000249         2924 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_546422, whole genome shotgun sequence.
ACCESSION   DATDDI010000249 DATDDI010000000
VERSION     DATDDI010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546422"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..984
                     /locus_tag="VIU37_03540"
     CDS             172..984
                     /locus_tag="VIU37_03540"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013046.1"
                     /translation="MTRDVVLVELDGRLVAMTAVPREVRADTPTYDLWGKVAPDLRRR
                     GVGSWLLDWSIERARQRAAAEDPDRPVRLGAHAGEQEAGARALYERAGLRPVRHFFLM
                     RRDHLEEVAPLPLPDGIEMRRVLPEQHRAIYDAGTEAFQDHWEPHDHGEEGFRQTFNQ
                     PDTNTDLWAVAWDGDQVAGVVETWIWSEENRRLGVRRGWLEKISVRRPWRKRGVARAL
                     TAAAMIKLREAGMDEAMLGVDAQNPSGALGLYESLGFTVFRRSMAYRAPLER"
     gene            complement(991..1629)
                     /locus_tag="VIU37_03545"
     CDS             complement(991..1629)
                     /locus_tag="VIU37_03545"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6013047.1"
                     /translation="MERLSRVVGPIATNVHILADSRSREAIAIDTATPSLAWIAGALA
                     ERDWTLKLIVSTHGHWDHIGDNAAVAAHTGARIAVHALDRDRLEHPEPLFAPFEIAPS
                     VPAVELAEGGFVRFGEIRLRVLHTPGHTEGSVCLLAEDDGELYSGDTLFAAGWGRVDL
                     PGGDAEAMVDSIGRLAALEDGVAVFPGHGDSTTIRRERAWMELVRDQGRLLA"
     gene            complement(1694..2635)
                     /locus_tag="VIU37_03550"
     CDS             complement(1694..2635)
                     /locus_tag="VIU37_03550"
                     /inference="COORDINATES: protein motif:HMM:NF018024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1028 domain-containing protein"
                     /protein_id="HEY6013048.1"
                     /translation="MTFSIVALDPATGDLGVAVQSKFLAVGAVVPWASAGIGAIATQS
                     FANVTYGPDGLALLAGGQRAADTLAQLVAADDLREQRQAGIVDADGGSATHTGRECFA
                     WAGGRTGPGFAAQGNILAGAAVVDGLADTLLAGGRPFPELLVACLAAADAAGGDRRGR
                     ESAALLIVRAGGGYGGGNDRWTDLRVDHHADPIGELGRLVDLQHLYYDRPAIDELEAV
                     DEAMAGEVRSLLESLGAGPGGRFGAVYAPMSGRPPEPEAPRPFVGEPRPLPANWDARW
                     QRALDDWMAVENLEERAAAPGWIDRRVLAVLRAKRPG"
     gene            complement(2664..>2924)
                     /locus_tag="VIU37_03555"
     CDS             complement(2664..>2924)
                     /locus_tag="VIU37_03555"
                     /inference="COORDINATES: protein motif:HMM:NF017999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEY6013049.1"
                     /translation="VDMEFAEQQPPDRALIKAHGQAPGSAVDATAEMRLSDGPDGTTV
                     MDWNADVNIAGTLASVGARLIEGTANKMIGQTFECIRTKLEA"
BASE COUNT          414 a         1078 c         1054 g          378 t
ORIGIN      
        1 agggaacaga tgatttggtt aaagtaaacg tttaaaaatt cagattagcg acaagacaaa
       61 atttgataaa tcagcatcgg gctgatccgg gacgcgcatg cccaagacgg cattccgtgg
      121 ctgccgaccg ccgacaccgt ccgcctcgac ctgacgccgg acgtcatcga cgtgacccgc
      181 gacgtcgtgc tcgtcgagct cgatggccgg ctggtggcga tgaccgcggt tccccgcgag
      241 gtccgcgcgg acaccccgac gtacgacctg tggggcaagg tcgcgccgga cctccgccgg
      301 cggggcgtcg gatcctggct gctcgactgg agcatcgagc gcgcgcgcca gcgggccgcg
      361 gccgaggacc cggaccggcc ggtcaggctc ggagcgcacg ccggcgagca ggaggcgggg
      421 gcccgggcgc tgtacgagcg cgccgggctc cggccggttc gccacttctt cctgatgcga
      481 cgcgaccacc tcgaggaggt ggcaccgctg ccgctccccg acggcatcga gatgcgccgc
      541 gtgctgcccg agcagcaccg ggccatctac gacgcgggca cggaggcgtt ccaggaccat
      601 tgggagcccc atgaccacgg cgaagagggg ttccgccaga cgttcaacca accggacacg
      661 aacaccgacc tgtgggccgt ggcctgggac ggcgaccagg tggccggcgt ggtcgagacc
      721 tggatctggt ccgaggagaa ccggcgcctc ggcgtccggc gcggctggct cgagaagatc
      781 agcgtccggc ggccgtggcg gaagcgcggc gtggcgcgcg cgctgacggc cgcggccatg
      841 atcaagctcc gcgaggccgg gatggacgag gcgatgctcg gggtggatgc ccagaacccg
      901 agcggcgcgc tcgggctgta cgagagcctc gggttcacgg tgttccgccg atcgatggcc
      961 taccgggcgc cgctcgagcg ctgatcgcgc ctaggcgagc agccggccct ggtcgcggac
     1021 cagctccatc caggcccgtt cgcggcggat cgtcgtcgag tcgccgtgcc cggggaagac
     1081 cgccaccccg tcctcgaggg cggccaggcg gccgatcgag tcgaccatcg cctcggcgtc
     1141 cccgcccggc aggtcgaccc ggccccagcc ggcggcgaag agcgtgtccc cgctgtacag
     1201 ctcgccatcg tcctcggcca ggaggcagac cgaaccctcc gtgtgacccg gcgtgtggag
     1261 cacccgcagg cggatctccc cgaagcggac gaacccaccc tcggcgagct cgacggccgg
     1321 cacggacggc gcgatctcga acggcgcgaa gagcggttcc gggtgctcga gccggtcgcg
     1381 gtcgagcgcg tgcacggcga tccgcgcccc ggtgtgcgcc gcgaccgcgg cgttgtcgcc
     1441 gatgtgatcc cagtggccgt gcgtcgacac gatcagcttg agcgtccagt cccgctcggc
     1501 cagcgcgccg gcgatccagg ccaggctcgg ggtcgcggtg tcgatcgcga tcgcctcgcg
     1561 cgagcgcgag tcggccagga tgtggacgtt ggtcgcgatc ggtccgacca cgcggctgag
     1621 gcgttccatc ggctcgattg tggcagaggc acggttcggc ccgggcatcg ctcgcccggg
     1681 gcaggcccac cggtcagccg gggcgcttcg cccgcaagac cgccagcacc cgacggtcga
     1741 tccagcccgg cgccgccgcc cgctcctcga ggttctcgac cgccatccag tcgtcgagcg
     1801 cgcgctgcca gcgagcgtcc cagttcgccg gcagcggccg cggctcgccg acgaacgggc
     1861 gcggcgcctc cggctcgggc gggcggcccg acatcggcgc gtagacagcc ccgaaccggc
     1921 cgcccggccc ggccccgagc gattcgagca gcgaccggac ctcgccggcc atcgcttcgt
     1981 cgacggcctc cagctcgtcg atcgccggcc ggtcgtagta gagatgctgg aggtcaacga
     2041 gccggccgag ctcgccgatc gggtccgcat ggtgatccac ccgaaggtcc gtccagcggt
     2101 cgttgccacc gccgtacccg ccgcccgctc gcacgatcag gagggcggcc gactcgcggc
     2161 cgcgccggtc accgccggcg gcgtcggcag cggccaggca ggcgacgagc aactcgggaa
     2221 atggccggcc accggcgagc agcgtgtcgg cgaggccgtc caccaccgcc gccccggcaa
     2281 ggatgttgcc ctgcgccgcg aagcccgggc cggtgcggcc gcccgcccac gcgaagcact
     2341 cccgcccggt gtgggtcgcc gagccaccgt ccgcgtcgac gatcccggcc tggcgctgtt
     2401 cgcgaaggtc gtcggcggcc acgagctgcg ccagcgtgtc cgccgcccgc tgtccgccgg
     2461 ccaggagcgc caggccgtcc gggccgtacg tcacgttggc aaacgactgg gtggcgatgg
     2521 cgccgatccc ggcgctcgcc cacggcacca cggccccgac cgcgaggaac ttcgactgga
     2581 ccgcgacgcc gaggtcgccg gtcgccggat ccagggcgac gatcgagaac gtcatgcgag
     2641 cggccggacc atcgccggac cggtcacgcc tcgagcttcg tgcggatgca ctcgaacgtc
     2701 tggccgatca tcttgttcgc cgtcccctcg atcaggcggg cgccgacgct cgccagcgtg
     2761 ccggcgatgt tgacgtcggc gttccagtcc atgacggtcg tgccatccgg cccgtccgac
     2821 aggcgcatct cggcggtcgc gtccaccgcg ctgccgggcg cctgcccgtg cgccttgatc
     2881 agggcccggt cgggtggctg ctgctcggcg aactccatgt ccac
//
LOCUS       DATDDI010000250         2313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_150904, whole genome shotgun sequence.
ACCESSION   DATDDI010000250 DATDDI010000000
VERSION     DATDDI010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150904"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VIU37_03560"
     CDS             complement(<1..629)
                     /locus_tag="VIU37_03560"
                     /inference="COORDINATES: protein motif:HMM:NF014298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY6013050.1"
                     /translation="METSPPTTPIQGRAGLPGSPILPPATIGILGGGQLGRMLALAAR
                     AMGYRVAVLDPDPDCPAAAVADRVVVGSYDDVGAALRLADLSAVVTYELEHVAADVVA
                     ALEVRLPVRPGHRPLTVTQDRLAERRFVEAAGIAVAPWREVRSVGEARAAATELGLPI
                     RLKLPIGGYDGRGQLRIADASQLDGAWGRLGRAPGAVLLAEQEQVFDCEL"
     gene            674..1216
                     /locus_tag="VIU37_03565"
     CDS             674..1216
                     /locus_tag="VIU37_03565"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEY6013051.1"
                     /translation="MHGEPPLTLRHVVLVGLMGAGKTTVGRRLAAGLGWRWLDSDAEI
                     EAATGLTVRELRDRDGVEAMHDLEAAQLLHALAEPDRSVVSAAASVVDLEACRDALTR
                     PGVAVVWLRGSPEVLAGRFATSEHRPAYGASPRVFLEQQAQRREPLLATLRPVVIDVD
                     ELDPDEAAARAAEALGSIPA"
     gene            1213..2283
                     /locus_tag="VIU37_03570"
     CDS             1213..2283
                     /locus_tag="VIU37_03570"
                     /inference="COORDINATES: protein motif:HMM:NF013335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEY6013052.1"
                     /translation="MTARTPLILDVDTGIDDSLALLYAAASDDAELVAATCVSGNIEA
                     RQVAINTRAVLELAGRTDVEVALGREVPLVRPLETTPETHGPQGLGHAELPPPSRPLS
                     ARHAVDLIVEEARRRPGEIMLVTLGPLTNLALALEREPALPRLLRGYTLMGGAYGVSG
                     NTTPTTEWNIHCDPDAARIVFAAWGAATAADPTIPRPLALGLDVTEQARVLPDDVVRL
                     ARRAGSRPDDSIALARGEDPMQATRSVASNPIVRYVADALRFYMEFHARYDGFYGAFI
                     HDPLAVAAALDRSLVTTEALYVDVETAGELTAGMTVADRRRLTGKPPNLDVAQTADVK
                     TFLDRLVERVGGLAATHPDVSR"
BASE COUNT          310 a          880 c          837 g          286 t
ORIGIN      
        1 agctcgcaat cgaagacctg ctcctgctcg gcgaggagga cagcgcccgg ggcgcgtccg
       61 agccgccccc acgccccgtc cagctgggac gcgtcggcga tccgcagctg gccgcggccg
      121 tcgtacccgc cgatcggcag cttcagccgg atcggcaggc ccagctccgt cgccgcagcg
      181 cgcgcctccc cgaccgagcg gacctcgcgc cagggcgcga cggcgatgcc tgccgcctcc
      241 acgaagcggc gctcggccag tcgatcctgg gtcacggtca acggccggtg gccgggccgg
      301 accggcagcc ggacttcgag tgccgcgacc acgtctgccg caacgtgctc cagctcgtag
      361 gtcacgaccg cgctcaggtc ggcgaggcgc agcgccgccc cgacgtcgtc atatgagccc
      421 acgacgacgc gatccgccac ggcggccgcg ggacagtccg gatcgggatc gagcaccgcg
      481 acccggtagc ccatcgcccg cgcagcgagc gcgagcatcc gccccagctg gccgccaccg
      541 aggatcccga tcgtggcggg tggcaggatg ggcgagccgg gcaggcccgc ccggccctgg
      601 atcggcgtgg tcggcggcga ggtctccatc ggccggagtg taggcggcgc ggcgccgggc
      661 taccctctgg ggcatgcacg gtgagccgcc gctcacgctt cgccacgtcg tgctggtcgg
      721 gctgatgggg gccggcaaga ccacggtcgg gcggcgtctc gccgccgggc tcggctggcg
      781 atggctcgat tccgatgccg agatcgaggc cgcgacgggc ctcaccgtcc gcgagctgcg
      841 ggatcgcgat ggcgtcgagg ccatgcacga tctcgaggcg gcgcagctcc tccatgcgct
      901 cgccgagccc gaccggagcg tggtcagcgc ggccgccagc gtcgtcgacc tggaagcgtg
      961 ccgtgacgcg ctgacccggc cgggtgtcgc cgtcgtgtgg ctccgcggct cgcccgaggt
     1021 gctcgccggg cggttcgcga ccagcgagca ccggccggcc tacggggcct cgccgagggt
     1081 cttcctggag cagcaggcgc aacggcgcga gccgctgctc gccacgctgc gacccgtcgt
     1141 catcgacgtc gacgagctcg atcccgacga ggccgccgcg cgggccgcgg aagctctcgg
     1201 tagcatcccg gcatgaccgc ccgaacgccg ctcatcctcg acgtcgacac cgggatcgac
     1261 gacagcctgg cgctcctcta cgcggcggcg tccgatgatg ccgagctggt cgccgcgacc
     1321 tgcgtctcgg gcaacatcga ggcacggcag gtcgccatca acacgcgggc cgtcctcgag
     1381 ctggccggac ggacggacgt cgaggtggca ctcggccgcg aggtcccgct ggtccgtccg
     1441 ctggagacca cgcccgagac ccacggcccg cagggcctcg gccatgccga gctcccgccg
     1501 ccgagccggc cgctgtcggc gcgccacgcg gtcgacctga tcgtggagga ggcccggcgc
     1561 cggcccggcg agatcatgct ggtcacgctc ggcccgctca cgaacctcgc cctcgcgctg
     1621 gagcgcgaac cggcgctgcc gcggctgctg cgcggctaca cgctgatggg cggggcctac
     1681 ggcgtctccg gcaacacgac gccgacgacc gagtggaaca tccactgcga cccggacgct
     1741 gcccggatcg tgttcgccgc ctggggcgcg gcgaccgccg ccgatccgac gatcccgcgc
     1801 ccgctggcgc tcgggctcga cgtcaccgag caggcccggg tgctgccgga cgacgtcgtt
     1861 cggctcgccc ggcgggccgg cagccggccg gacgattcga tcgcgctcgc ccgcggcgag
     1921 gatccgatgc aggcgacccg ttccgtggcg agcaacccga tcgtgcgcta cgtcgccgac
     1981 gcgctgcgtt tctacatgga gttccacgcc cgctacgacg gcttctacgg ggccttcatc
     2041 cacgacccgc tggccgtggc ggcggcgctc gatcgctcgc tggtgacgac cgaggcgctc
     2101 tacgtcgacg tcgagacggc cggcgagctg accgccggga tgaccgtcgc cgaccgtcga
     2161 cggctgaccg ggaagccgcc gaacctcgac gtcgcccaga cggcggacgt caagacgttc
     2221 ctcgaccggc tggtcgaacg cgtcggaggg ctggcggcga cccaccccga cgtgtcacgc
     2281 tagacgagga gggatcaatc gccgatcgga cac
//
LOCUS       DATDDI010000251         2309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_546455, whole genome shotgun sequence.
ACCESSION   DATDDI010000251 DATDDI010000000
VERSION     DATDDI010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546455"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1384)
                     /locus_tag="VIU37_03575"
     CDS             complement(<1..1384)
                     /locus_tag="VIU37_03575"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF013296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEY6013053.1"
                     /translation="MPDVATSPSDLLTRLAGSAHLDGDRLVIDDEAAFRDAGIRDLAW
                     TAAFSIDEATIEAAQWLIWEASQVLGARSASIQGLYDARARGEVSGFTVPAINLRAQT
                     FDMARTVYETAQAANVGAVILEIARSEQTYTFQRPIDFATASLAGAVAAGWHGPVFLQ
                     GDHYQFNAKKYAADPEAMTEEIRRACRLAVDAGYRNIDIDSSTLVDLGKPNADEEQHE
                     NYVRAAELTALIRTLEADGVTISVGGEIGEVGTKNSTVEELRAYLDGYRRELEQRAPG
                     ARTISKVSVQTGTSHGGIPLPDGGVAEVKLDFEVLRELGEVARTYGLAGAVQHGASTL
                     PDELFHRFPAVETAEIHLATGFQNALYEHPAFPESLHRAIETWCFENLADERTPGQTD
                     VQFVYTSRKKAIGPFKRQLWDLATKDEILASQAAKVDFLFKQLGTPGSRALVEKYVKP
                     VEYHKPLPEAL"
     gene            complement(1520..2011)
                     /locus_tag="VIU37_03580"
     CDS             complement(1520..2011)
                     /locus_tag="VIU37_03580"
                     /inference="COORDINATES: protein motif:HMM:NF021538.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 family protein"
                     /protein_id="HEY6013054.1"
                     /translation="MLQLFLFLHVMGAIAVFGPTFVFPVIASQAQKSPQNGPFAAALS
                     EYIERRIVLPGAVVQGITGVALILILGADLTSASYRWLIGGIVLYLIAILFAAFVQAP
                     AAEKMVRLTRGGPPPGPPPAGAPAGPPPEILETARKLQRGGMVLTVLIVAIVILMVTK
                     PGY"
BASE COUNT          315 a          787 c          842 g          365 t
ORIGIN      
        1 tgagcgcttc gggcagcggc ttgtgatact cgaccggctt gacgtacttc tcgacgagcg
       61 cgcggctccc cggggtgccg agctgcttga agaggaagtc cacctttgcg gcctggctgg
      121 cgaggatctc gtccttcgtc gcgaggtccc agagctggcg cttgaacggg ccgatcgcct
      181 tcttgcggct ggtgtaaacg aactggacgt ccgtctggcc gggcgtgcgc tcgtcggcga
      241 ggttctcgaa gcaccaggtc tcgatcgcgc ggtggagcga ctccgggaac gccgggtgct
      301 cgtagagcgc gttctggaac ccggtcgcca ggtggatctc ggcggtctcg acggccggga
      361 accggtggaa cagctcgtcg ggaagggtgg acgcgccgtg ctggacggcg ccggcgagcc
      421 cgtacgtgcg ggcgacctcg cccagctcgc gaagcacctc gaagtcgagc ttgacctcgg
      481 ccacgccgcc gtcgggcagc gggatccccc cgtgtgaggt gcccgtctgg acgctgacct
      541 tcgagatcgt acgggcaccc ggcgcccgct gctcgagctc gcgcctgtag ccgtcgaggt
      601 aggcgcggag ctcctcgacg gtcgagttct tcgtcccgac ctcgccgatc tcgccaccga
      661 cgctgatcgt gaccccgtcg gcctcgagcg tccggatcag cgcggtcaac tcggccgccc
      721 gaacgtagtt ctcgtgctgt tcctcgtccg cgttgggctt gcccaggtcg acgagcgtcg
      781 acgaatcgat gtcgatgttg cggtagcccg cgtcgacggc gaggcggcag gcgcgccgga
      841 tctcctcggt catggcctcc gggtcggccg cgtacttctt cgcgttgaac tggtagtggt
      901 cgccctggag gaagaccggg ccgtgccagc cggccgccac ggctccggcg agcgacgcgg
      961 tcgcgaagtc gatcgggcgc tggaacgtgt acgtctgctc gctccgggcg atctccagga
     1021 tcacggcgcc gacgttggcg gcctgggccg tctcgtacac ggttcgcgcc atgtcgaagg
     1081 tctgcgcccg caggttgatg gcggggacgg tgaacccgga gacctcgccc ctggcgcggg
     1141 cgtcgtacag gccctggatg ctcgccgagc gcgcgccgag gacctggctg gcctcccaga
     1201 tcagccactg cgcggcttcg atggtggcct cgtcgatcga gaacgcggcg gtccaggcga
     1261 ggtcgcggat cccggcgtca cggaaggcgg cctcgtcgtc gatgacgagc cggtcgccgt
     1321 cgaggtgggc gctgcccgcg aggcgggtca gcaggtcgga tggcgatgtc gcgacgtcgg
     1381 gcatggggtc agcgtctcct cgagggggtc gggactccat ggtaccggcc cctcgagtcg
     1441 ctcgcgcaag ggcccttcgg cccgcttgcg agggtcgctt cggccgcgcc tccgcccgcc
     1501 ctccgaacgg ggtccgggcc tagtagccgg gcttggtcac catcaggatg acgatcgcca
     1561 cgatcaggac cgtcaggacc atgccgccgc gttggagctt ccgggcggtc tcgaggatct
     1621 cgggtggcgg gcccgcgggc gcaccggccg ggggcggtcc gggcgggggc ccgcctcgcg
     1681 tgaggcggac catcttctcg gccgccggag cctggacgaa ggcggcgaac aggatcgcga
     1741 tcaggtacag gacgatcccg ccgatcagcc agcggtacga cgcgctcgtc aggtccgcgc
     1801 ccaggatgag gatcagggcg accccggtga tcccctggac gaccgcgccc ggcaggacga
     1861 tgcgccgctc gatgtactcg ctgagcgccg ccgcgaacgg cccgttctgc gggctcttct
     1921 gcgcctggct cgcgatcacc gggaagacga acgtcggccc gaacaccgcg atcgcgccca
     1981 tcacgtgcag aaacaggaac agctggagca tcggcacgcc ctccatcgac gtcggacgcg
     2041 cggtcgggga cgcgccgcgc gaacgcgcca tcggaggata cccggtccgg tcgagggcga
     2101 gaccccgttc ccggccggtc atgcctccgg gccggctcgc tacgagaccc gcttcgtccg
     2161 ccgattgacg aagtcgacca ggacgtactc gccgagtcgc tcgggcgtgg cgtagaaggc
     2221 gcggccgcgg ttgagccgcg tcatgtgcgc cacgaactcg gcgagcgccc gcgatcgttc
     2281 cagcatgaac gtgttgatcg tgatcccct
//
LOCUS       DATDDI010000252         1773 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_5413, whole genome shotgun sequence.
ACCESSION   DATDDI010000252 DATDDI010000000
VERSION     DATDDI010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5413"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VIU37_03585"
     CDS             complement(<1..682)
                     /locus_tag="VIU37_03585"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6013055.1"
                     /translation="MRIVVTGAGGRIGRHVVADLLAHDHEVHAVDRSAPPDDPAIGDA
                     GRGATWTRIDVRDLDAMARLLDAARADALIHLAAIPSPRMGTPLEVFATNTQATFVAF
                     EAAGMAGVSRVATASSTSVTGLPFAAPPVSPLYVPVDEGHPNVGNDPYALSKEADEAT
                     ARTMHRRHGYQVVALRICNTAPMADQVRKAAEVARDPSGLACELWAYLDVRDGARAFG
                     LAVEREIPG"
     gene            complement(714..>1773)
                     /locus_tag="VIU37_03590"
     CDS             complement(714..>1773)
                     /locus_tag="VIU37_03590"
                     /inference="COORDINATES: protein motif:HMM:NF016202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VanW family protein"
                     /protein_id="HEY6013056.1"
                     /translation="TYGPTLDSTPLAKVIQRFAPKVDRAPVDATFTVTDGKVLGISPS
                     KDGYKLDVPATVAQVQAMLAGRAAGFTVTQIVPTLTVTKPALTTAQAEAAAPQMTLIS
                     SWKTYFPISERNGFGANIWIPALAIDGTIVAPHATFDFWDAIGPVTREKGYTDGGAII
                     NGKTEPQGALAGGICSCSTTLFNAALRGGYQMDARRNHFYYIDRYPLGLDATVFISAS
                     GAVQTMSWTNDTDYPVLIRGYKIRNGTRGYVKFELYSVPNGRTVVISDPVVKNVKPAT
                     DTTQLTNTLAPGVRKRVEYPVDGKQVWRTVTVYDASGAIIHQTTYYSNYSRITGLTLI
                     GAPRTAGTSPTPTPTPTP"
BASE COUNT          231 a          598 c          658 g          286 t
ORIGIN      
        1 agccggggat ctcgcgctcg accgcgagcc cgaaggcgcg cgcgccgtca cgaacgtcca
       61 ggtaggccca cagctcgcac gccagcccgg aaggatcgcg ggcgacctcg gccgccttcc
      121 ggacctggtc cgccatcggc gcggtattgc agatccgcag cgccacgacc tggtagccgt
      181 ggcgccggtg catcgtccgt gcggtcgcct cgtccgcctc cttcgacagg gcgtacgggt
      241 cgttgccgac gttggggtgc ccctcgtcga cgggcacgta cagcggcgac accggtggcg
      301 cagcgaacgg caggccggtc accgaggtgc tcgacgcggt ggccacccgg gagacgccgg
      361 ccatcccggc cgcctcgaac gcgacgaacg tggcctgggt gttggtcgcg aagacctcga
      421 ggggcgtccc catccgcggc gacgggatgg ccgccaggtg gatcagcgcg tcggcccgcg
      481 ccgcgtcgag cagccgcgcc atggcgtcga ggtcgcggac gtcgatccgc gtccaggtgg
      541 cacctcggcc ggcgtccccg atggcggggt cgtcgggcgg cgcggaacgg tcaaccgcgt
      601 ggacttcgtg gtcgtgggcc aggagatcgg ccaccacgtg ccggccgatc cgcccgccgg
      661 ctcccgtcac gacgatccgc acctcgtgcg ctccgcttcc gcccggcgac gggtcagggt
      721 gtcggcgtgg gggtcggggt cggggacgtg cctgcggtcc gcggcgcccc gatcagggtc
      781 agcccggtga tccgcgagta gttcgagtag tacgtcgtct ggtggatgat cgcgccgctc
      841 gcgtcgtaga ccgtgacggt ccgccagacc tgcttgccgt cgaccgggta ctcgactcgc
      901 ttgcggacgc ccggcgccag cgtgttcgtc agctgggtgg tatccgtggc cggcttgacg
      961 ttcttcacga ccgggtcgct gatcacgacc gtccggccgt tcgggacgct gtacagctcg
     1021 aacttcacgt agccccgggt cccgttgcgg atcttgtagc cacggatcag gaccgggtag
     1081 tcggtgtcat tcgtccacga catcgtctgg accgcgccgg acgcgctgat gaacaccgtg
     1141 gcgtcgagcc cgagcggata ccggtcgatg tagtagaagt ggttgcgccg ggcgtccatc
     1201 tggtacccgc cccggagcgc cgcgttgaac agggtcgtgg agcacgagca gatcccgccg
     1261 gccagcgcgc cctgcggttc ggtcttgccg ttgatgatcg cgcccccgtc cgtgtagccc
     1321 ttctcgcggg tgaccgggcc gatggcgtcc cagaagtcga aggtggcgtg gggagcgacg
     1381 atggtcccgt cgatggccag cgccgggatc cagatgttcg caccgaagcc gttgcgctcg
     1441 ctgatcggga agtaggtctt ccaggacgag atgagcgtca tctgcggggc cgccgcctcg
     1501 gcctgggccg tggtgagcgc aggcttcgtg acggtcaggg tcgggacgat ctgcgtgacc
     1561 gtgaaacccg ccgcgcgccc ggcgagcatg gcctggacct gggcgaccgt ggccgggacg
     1621 tcgagcttgt agccgtcctt gctcggcgag atcccgagca ccttgccgtc ggtgaccgtg
     1681 aacgtcgcgt cgacgggtgc gcggtcgacc ttcggcgcga agcgctggat caccttggcc
     1741 agtggcgtcg agtcgagggt cgggccgtac gtg
//
LOCUS       DATDDI010000253         2075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_296573, whole genome shotgun sequence.
ACCESSION   DATDDI010000253 DATDDI010000000
VERSION     DATDDI010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296573"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VIU37_03595"
     CDS             complement(<1..288)
                     /locus_tag="VIU37_03595"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013057.1"
                     /translation="MRDVKSPAGSLRAERAAVTRRRILEAARRRFADAGYGATTLREI
                     AVAAGVAVQTVYAVFGSKASILRALRESVVDDPAAAEAYGAAIASTDVRDAL"
     gene            352..798
                     /locus_tag="VIU37_03600"
     CDS             352..798
                     /locus_tag="VIU37_03600"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEY6013058.1"
                     /translation="MSVDLVAEQNIAVAHRLIEEGFTQGNEAVCDDLVAPDMVEHQRG
                     LKPGPEGVKETIRTLHTWFSEFELTIDDLVAQGDQVWIRATGRGLNTGSVFGRPPTGR
                     RSEITVFDQIRLRDGRIVEHWGVPDQLSLLIQLGLFGRPEPAPVAV"
     gene            complement(828..1718)
                     /locus_tag="VIU37_03605"
     CDS             complement(828..1718)
                     /locus_tag="VIU37_03605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013059.1"
                     /translation="MSDLPPEPAPASTPPSRAPIGSLGIAMAGVQARFQTVTVIVTTL
                     VAIGVAAILVPALAGPVADRFGSALALLVLGLVCWAIFVIAIAVIAILPPLLLPRRER
                     AVFAVNSWIGAREVRRTFGRASRAIGLPSDAASAEAWLARNPGSDRIRFVRVDALMLA
                     RRFDDARVEAELLPERSPLDVYRKAEARALIADQTDGTVDEDALRAGVAAVPAGIERT
                     EAAASLAVFRARRALPDGDWRAPLLEVRPAIPGSDFRVLVADFGLPVFEILFRRAVLP
                     FTALLAIIGLSFAVVPALFR"
     gene            1888..>2075
                     /locus_tag="VIU37_03610"
     CDS             1888..>2075
                     /locus_tag="VIU37_03610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013060.1"
                     /translation="MGEAKTGKAFITHEYDEAIAVQQCIVDAETTLATSHPVASAKAA
                     IKTALTEDKKFLVQLKQLG"
BASE COUNT          359 a          722 c          727 g          267 t
ORIGIN      
        1 cagggcatcg cgaacgtcgg tcgatgcgat ggcggctccg taggcttccg cggcggccgg
       61 atcgtcgacg acggactcgc gcagggctcg gaggatgctg gccttggacc cgaagacggc
      121 atagacggtc tgcacggcga caccggccgc gaccgcgatc tcgcgcagcg tggtggcgcc
      181 gtagccggcg tccgcgaacc ggcgccgggc cgcttcgagg atgcggcgcc gggtgacggc
      241 ggcccgttcg gcgcgaaggc ttccggcggg gctcttgacg tctctcacct cgatagagta
      301 caactccact ccaatagagc aagactctat cgaacggaag gagcgtcccc aatgtccgtc
      361 gacctcgtcg ccgaacagaa catcgccgtg gcccaccgcc tgatcgagga agggttcacc
      421 cagggcaacg aggccgtctg cgacgacctc gttgcgcccg acatggtgga gcaccaacgc
      481 ggactcaagc ccgggccgga gggagtcaag gagaccatcc gcacgctgca cacgtggttc
      541 agcgagttcg aattgacgat cgacgacctc gtggcccagg gcgaccaggt gtggatccgc
      601 gcgaccggtc gcggtctcaa cacggggagc gtcttcgggc ggccaccaac cggacgccgc
      661 tccgaaatca ccgtcttcga ccagattcgc ctcagggatg gacggatcgt cgagcactgg
      721 ggcgtccccg accagctcag cctgctcatc cagctcggcc tgttcgggcg gcccgaaccg
      781 gccccggtcg ccgtctgacg gcgccccgcg cggtcagtgc ccggcgatca ccggaagagc
      841 gccggcacga cggcgaacga cagcccgatg atcgccagga gcgcggtgaa cggaaggacg
      901 gccctgcgga acaggatttc gaagacgggc aatccgaagt cggcgacgag cacccggaag
      961 tccgagcccg ggattgcggg gcgtacctcg agcagcggcg cgcgccagtc gccgtccggc
     1021 aacgcccgcc gggcacgaaa caccgccagg ctcgccgccg cttccgtccg ctcgatcccg
     1081 gcgggcacgg cggccacgcc cgcgcgcagc gcatcctcgt cgacggtgcc gtcggtctgg
     1141 tccgcgatca gcgcgcgggc ctcggccttg cggtagacgt cgagcggcga gcgctcgggc
     1201 aggagctccg cctcgacgcg ggcgtcgtcg aatcgccggg cgagcatgag ggcgtccacg
     1261 cggacgaagc ggattcgatc cgatccgggg ttccgggcca gccaggcctc ggccgacgcc
     1321 gcatcgctcg gcagtccgat cgcccgcgac gcgcgcccga acgtccgacg gacctccctc
     1381 gccccgatcc atgagttcac tgcgaacacc gcccgctccc gcctggggag caggagcggc
     1441 ggcaggatcg cgatgaccgc gatcgcgatc acgaagatcg cccagcacac gaggccgagg
     1501 accaggagcg cgagggcgct gccgaacctg tcagcgacgg gtcccgccag ggctggaaca
     1561 aggatcgcgg cgacgccgat cgcgaccagg gtcgtgacga tcaccgtgac cgtctggaag
     1621 cgcgcctgga cgccggccat cgcgatgccg agcgacccga tgggtgcccg tgacggcggg
     1681 gtgctcgcgg gtgccggctc cggtgggaga tcgctcacgg gcagatcgta gggcgtggcg
     1741 tcgtacggcg gtactcgcag cggcggggtc ctcacgaccg caatgccgtt gattcgtgag
     1801 ctcccgttcc agcgtgcgtc cttgacccct ggacccgtca aggtgacgaa gacaggggga
     1861 ccctccccat gcatcgagga gaacaccatg ggcgaggcca agaccggcaa ggcattcatc
     1921 acccacgagt acgacgaggc gatcgcggtg cagcagtgca tcgtcgatgc cgagaccacg
     1981 ctcgcgacgt cgcatccggt cgcctctgcc aaggcggcca tcaagacggc gctcaccgag
     2041 gacaagaagt tcctcgtgca gctgaagcag ctcgg
//
LOCUS       DATDDI010000254         1806 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_317408, whole genome shotgun sequence.
ACCESSION   DATDDI010000254 DATDDI010000000
VERSION     DATDDI010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317408"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..1061)
                     /locus_tag="VIU37_03615"
     CDS             complement(72..1061)
                     /locus_tag="VIU37_03615"
                     /inference="COORDINATES: protein motif:HMM:NF014601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HEY6013061.1"
                     /translation="MKVLVYGTGVIGTIYGDVLSQAGHEVSHYVRTGRRAGRGSALDV
                     CLLDGRTTEPHELHVRYPARIVDGFGPADGYDLILVSLKHYDVPSVLYQLAVDTGKAD
                     ILFFSNWWDDLAAIDDVLAGRYLWGFPVAGGGWVDGVLDAALLDTVHLGEIDGRDTPR
                     LVRVRELFESAGLEVAIEPDILHWLWVHFATEAGLIGSAIAAGSVDALLSATAQLEAA
                     ILTAREALEVCRARGVAVERIPDAATFFAPPETAAAGIHDFYATNLPARRILERHTGV
                     EELKRVYSDVVATGERLGVPMPRLTALRPAVEAWTGGPTTGRTPARQPATAGT"
     gene            1315..>1806
                     /locus_tag="VIU37_03620"
     CDS             1315..>1806
                     /locus_tag="VIU37_03620"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013062.1"
                     /translation="MTDTAPRRWWAMAALSLAVLAVSLDVTVLTVALPTLANAFKASE
                     SELQWFITAYTLVLAAAMLPAGLLGDRYGRKPVTAIALAIFGLGSVACAYAPSPEAFI
                     VARAVLGLSGAALIVMALSLITVLFAEDERPRAVGIWGSANFVALPLGPILGGWILTN
                     AWWG"
BASE COUNT          248 a          636 c          640 g          282 t
ORIGIN      
        1 ggcggccgag gtcaacctgc cctgacgggc cggtcgtcag gtgcccgccg tcgccggctg
       61 ctgaccggtc gtcaggtgcc cgccgtcgcc ggctgccggg cgggcgtccg gccggtggtc
      121 gggccgcccg tccaggcttc gacggccggg cggagcgctg tgagcctcgg catcggtacg
      181 ccgagccgtt ccccggtggc caccacgtcc gaatagacgc gcttgagctc ctcgacgccc
      241 gtgtggcgtt cgaggattcg cctggcggga aggttcgtcg cgtagaagtc gtggatgccg
      301 gcggccgccg tttccggcgg ggcaaagaac gtcgccgcat ccgggatccg ctcgaccgcc
      361 acgccacgcg cacggcagac ctcgagcgcc tcgcgcgcgg tcaggatcgc ggcttccagc
      421 tgtgccgtgg cgctgagcag ggcgtcgacg ctgccggccg cgatcgccga gccgatcagg
      481 cccgcttcgg tcgcgaagtg gacccacaac cagtgcagga tgtccggctc gatcgcgacc
      541 tcgagcccgg cgctctcgaa cagctcgcgc acgcggacca gtcgcggcgt gtcgcgccca
      601 tcgatctcgc cgaggtggac ggtgtcgagc agggcggcgt cgaggacacc gtccacccag
      661 ccgcccccgg cgaccgggaa gccccacagg tagcggccgg ccaggacgtc gtcgatcgcc
      721 gcgaggtcgt cccaccagtt gctgaagaac aggatgtcgg ccttgcccgt gtccacggcc
      781 agctgataca ggaccgacgg gacgtcgtag tgcttgaggc tgacgaggat caggtcgtag
      841 ccgtcggccg gtccgaaccc gtccacgatc ctggccgggt agcgaacgtg gagctcgtgg
      901 ggctcggtcg tccggccgtc gagcaggcag acgtcgaggg cggacccgcg acccgcccgc
      961 cggccggtcc ggacgtaatg gctgacctcg tggccggcct gcgacagcac gtcgccgtag
     1021 atggtgccga tcacgccggt tccgtagacg aggaccttca tcgcgctgcc gtgcctttcg
     1081 gtcgcgcggc tggccgggag tgaccggaac agcctccgcg agcctcactg tgggcgccgg
     1141 acggacacga tcgggagtgc ggattggacc gttttgccga gccaatgggc tcagggcgag
     1201 cgcgtggcga gcgcccctcc ctccctggtt gacatcagct ctatactgcg agtgactttc
     1261 aaataagagg cagaagcaga tggatgtgga tgccaggaaa ggactcgtga tcagatgacc
     1321 gacaccgccc cccgccgctg gtgggccatg gctgccctca gcctcgccgt cctggccgtc
     1381 agcctcgacg tcaccgtgct caccgtggcg ctgccgacgc tcgccaacgc cttcaaggca
     1441 tcggaatccg aactccagtg gttcatcacg gcctacacgc tcgtcctcgc ggcggcgatg
     1501 ctgccggctg gactgctcgg cgaccggtac ggccggaagc ccgtcacggc catcgccctc
     1561 gccatcttcg ggctcggttc ggtcgcctgc gcgtacgccc cgagccccga ggcgttcatc
     1621 gtcgcccgcg cggtgctcgg cctgtccggc gcggcgctga tcgtgatggc gctgtcactg
     1681 atcacggtcc tgttcgccga ggacgagcgg cctcgtgccg tcggcatctg ggggtcggcg
     1741 aacttcgtgg cgctgccgct cgggccgatc ctcggcggct ggatcctgac caacgcgtgg
     1801 tggggc
//
LOCUS       DATDDI010000255         2935 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_525553, whole genome shotgun sequence.
ACCESSION   DATDDI010000255 DATDDI010000000
VERSION     DATDDI010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525553"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..626
                     /locus_tag="VIU37_03625"
     CDS             <1..626
                     /locus_tag="VIU37_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEY6013063.1"
                     /translation="ANRMGARWGAPDPESVWDEVRRLSPVHAGMSYARLEAEGGLQWP
                     CYDETHPGELFLHSRLWEEPLIGHRVPFVPVDHDPPVDRLDADFPIRLTTGRRLDSYN
                     TGVQSGGYTSPLRRGESLDISPEDAAAHGLTDGERVRVVSRRGEVEVPIRVDESLRPG
                     LTFMTLHFQDDVATNLLTIDATDPKSGTAEFKATAIRIERLPEEAVR"
     gene            complement(748..2655)
                     /locus_tag="VIU37_03630"
     CDS             complement(748..2655)
                     /locus_tag="VIU37_03630"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY6013064.1"
                     /translation="MTRPSTRPRVVALVVASAVTLTTLATPWSSGTARALELSTTLPT
                     GLSQLVASASTSASVRGIAEFDAVPTAAQVATLESLGLVVQPMRHVPLALVLGPLTAM
                     QAAVAGGTAQDVYPDDPIQLLDTSSSDAMGAGSLRAAGLTGKGVTVAVVDSGCDASHP
                     DLADHVVHNVKLYSPEYANVPPDGGNRIVVANETGPYQNTDIGGGHGTHVAGIIAADS
                     TTDPAGGRFGVAPDASLVCYSIGEVLFTTAVVTAYDHMLDQPDLWGIDVVNNSWGNSF
                     RQFDPRDPVSVVTKAVADLGVVVVFAAGNSGYEDAEMSLNPFSEAPWVLSVAAGTLDH
                     QRGNFSSNGLVFDNSQPTQIGGGGHTTWTGDRIGVYHPDVTAPGVAISSTCDTAGTVI
                     GPCPPPDYGNAVADGTSMASPHVAGAAAVLLQANPALTPDQVRAALQATATPVAAADG
                     TALPFWEVGYGYVDLKGAVDLVRSRSWSRDLPRAQSRADARVLAADGFGVTRTDMWTY
                     DAPRGTVAGTDNHTYAVAVPIGTTHVKVVLSHPSLAVVGINGLSYTVTVRDAAGQLLG
                     TTAESLTEGAGTASVLIDLRSFTNPPVAYGAFTFEVSGAYAASDPDTLDSDSLLGRMV
                     TLQVAQVIAGR"
BASE COUNT          425 a         1003 c         1100 g          407 t
ORIGIN      
        1 tggccaaccg gatgggcgcg cgctggggcg ccccggaccc ggagtcggtc tgggacgagg
       61 tccggcgact gtcgccggtc cacgccggga tgagctacgc ccggctcgag gcggaaggcg
      121 gcctccagtg gccgtgctac gacgagaccc atccgggcga gctgttcctc cactcccggc
      181 tgtgggaaga gccattgatc ggccatcgcg tcccgttcgt ccccgtcgac cacgacccgc
      241 ccgtcgaccg gctggacgcc gacttcccga tccggctgac gaccggacga cggcttgact
      301 cctacaacac cggtgtccag tcgggcggct acacctcgcc gctgcgccgc ggcgagagcc
      361 tcgacatcag ccccgaggat gccgccgcgc acggtctcac ggacggtgag cgcgtgcggg
      421 tcgtgtctcg ccgcggggag gtcgaggtcc cgatccgggt ggacgagtcg ctccggccgg
      481 gcctgacgtt catgacgctc cacttccagg acgacgtcgc cacgaacctc ctgacgatcg
      541 acgccacaga tcccaagtcg ggcacggccg aattcaaggc gacggcgatc cggatcgaga
      601 ggctgccaga ggaggcggtc cgatgagcat cccggcgcgg atcacgattc cgtggccgct
      661 ccggcgcgca gcctcgccgg gggcaggaag cggcgccggc cgccgagggg cgggcggccg
      721 gcgcctggga aacggggaag cgaggggtca gcgcccggcg atcacctggg ccacctggag
      781 ggtgaccatg cggccgagca gggagtcact gtcgagcgtg tccggatccg aggcggcgta
      841 ggcgccgctg acctcgaacg tgaacgcgcc gtaggcgacg ggtggattgg tgaacgagcg
      901 gaggtcgatg aggacgctgg cggtgccggc gccttcggtc agcgattcgg ccgtcgtccc
      961 gagcagctgt ccggcggcgt cgcggacggt gaccgtgtag ctgagcccgt tgatcccgac
     1021 aacggcgagc gaggggtgcg acaggacgac cttcacgtgc gtcgtcccga tgggcacggc
     1081 gacggcgtag gtgtggttgt cggtgcccgc gaccgttccg cgcggtgcgt cgtacgtcca
     1141 catgtcggtc cgcgtgacgc cgaacccgtc ggcggccagg actcgcgcgt cggcgcgcga
     1201 ctgcgccctc ggcagatccc tcgaccagct cctcgaacga acgaggtcga cggcgccctt
     1261 gagatcgacg tagccgtagc cgacctccca gaacggcagc gcggtcccgt cggcggccgc
     1321 gaccggggtg gcggtcgcct gcagcgccgc acggacctgg tccggggtga gcgcggggtt
     1381 cgcctggagc agcaccgcgg cggcaccggc gacgtgcggc gaggccatgc tcgtgccgtc
     1441 ggcgacggcg ttcccgtagt cgggcggcgg gcagggcccg atcacggtcc cggccgtgtc
     1501 gcaggtcgag gagatcgcga cgcccggggc ggtcacgtcc gggtggtaga ccccgatccg
     1561 gtcaccggtc caggtcgtgt ggccaccgcc gccgatctgg gtgggctgtg aattgtcgaa
     1621 gaccaggccg ttcgacgaga agttgccgcg ctggtggtcg agcgtcccgg cggcgaccga
     1681 gagcacccac ggggcctcgc tgaacgggtt gaggctcatc tcggcatcct cgtacccgct
     1741 gttgccggcc gcgaacacca ccaccacgcc gaggtccgcg acggccttgg tcacgaccga
     1801 cacgggatcg cgcggatcga actggcggaa ggagttgccc cacgagttgt tgaccacgtc
     1861 gatgccccac aggtcgggct ggtccaacat gtggtcgtag gcggtcacga ccgccgtcgt
     1921 gaacaggacc tcgccgatcg agtagcagac caggctggcg tcgggcgcga cgccgaagcg
     1981 gccgccggcc gggtcggtcg tgctgtcggc ggcgatgatc ccggccacgt gcgtgccgtg
     2041 gccaccgccg atgtcggtgt tctggtaggg accggtctcg ttggcgacga cgatccggtt
     2101 gcccccgtcc ggcggcacgt tcgcgtactc cgggctgtac agcttgacgt tgtggacgac
     2161 gtggtcggcc aggtcggggt ggctggcatc gcagccgctg tcgacgacgg ccaccgtcac
     2221 gcccttcccg gtcagcccgg ccgcacggag cgagccggcg cccatcgcgt cggacgatga
     2281 cgtatcaagc agctggatcg gatcgtcggg gtagacgtcc tgggccgtgc cgccggcgac
     2341 ggcggcctgc atcgcggtca gcggcccgag cacgagcgcg agcggcacgt ggcgcatcgg
     2401 ctggaccacc aggccgaggc tttcgagggt ggcgacctgg gccgcggtcg gcacggcgtc
     2461 gaactcggcg atcccacgga cggacgcgct cgtcgaggcg gacgcgacga gctgcgagag
     2521 cccggtcggg agggtcgtcg agagctccag cgcgcgcgcc gttcccgacg accacggcgt
     2581 cgcgagggtc gtcagcgtca ccgcggacgc gacgaccagc gcgacaacgc ggggacgagt
     2641 cgagggtcga gtcatagcac ctctcccagt ggtgtcagtt gccccagtgg ccgggagagt
     2701 agccaccccg gatagtggtg tcaatacccg agatcatcct gcgtcgtgaa tcgccgatct
     2761 cacgcttcgg caacccggcg ctacactcgg ccgcaatgga tctccacgtc atcggtccgc
     2821 tggcgtcccc cacggaacga gccgccgtgg acgccgtcct gggagcgccg acctcgggct
     2881 ggaccggcgg cgggcgtgac tccgcggcgg acggccacgc ggcacgtggc gggca
//
LOCUS       DATDDI010000256         1825 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_546618, whole genome shotgun sequence.
ACCESSION   DATDDI010000256 DATDDI010000000
VERSION     DATDDI010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546618"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VIU37_03635"
     CDS             <1..232
                     /locus_tag="VIU37_03635"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013065.1"
                     /translation="PSSATHRQDTFGLSGREREVLALVAQGRTNREIGERLFISQKTV
                     GVHVGNILAKLAVSGRVEAATVAIRLGLTSPN"
     gene            695..1153
                     /locus_tag="VIU37_03640"
     CDS             695..1153
                     /locus_tag="VIU37_03640"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEY6013066.1"
                     /translation="MTHARHLVPLLLAVAVGASAAACVTATPGWTYAPAPSVTPPPSA
                     APSGSAGSPAPSEATGGVQISALNVAFEQTSVTAPAGKAFQIAFDNKDAGTPHNVAIH
                     KDSATGAEVFKGEIVTGPATKTYDVPALDAGTYAFVCTVHPNMTGTLTVQ"
     gene            1167..>1825
                     /locus_tag="VIU37_03645"
     CDS             1167..>1825
                     /locus_tag="VIU37_03645"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HEY6013067.1"
                     /translation="MTPTGEQLCYTDAYLRSVEARVASVETGDSTLLVLDRTVFYPGG
                     GGQPSDRGLLLRASDGRSWTVRAARKAGGDIVHELEPGDGDPPAVGDVLRVDLDWARR
                     LALMRTHTALHALCGVVWRDYGALVTGGNMEPGSGRMDFEFERMSGDLVDAIEATVNA
                     ELAAARDVRVAVLPREEAFAIPDLIRTKINLLPPGIEQVRVVELVGLDLQADGGTHVH
                     ST"
BASE COUNT          277 a          656 c          637 g          255 t
ORIGIN      
        1 cccatcgagc gcgacccacc ggcaggacac gttcggcctc agcggccgcg agcgcgaggt
       61 gctcgccctc gtcgcgcagg gccgaacgaa ccgcgagatc ggcgagcgcc tgttcatcag
      121 ccagaagacc gtcggcgtcc acgtcggcaa catcctggcc aagctggcgg tctcgggccg
      181 ggtggaggcc gcgaccgtgg ccatccggct ggggctcacc agcccgaact agtaccccgg
      241 acgccgcgag acccggaggg agggtctccg ggtctcgatc ggatcgctgt gcgctcgtcc
      301 ggatgggctc cggccgaggt tggcgtctta ggtgcggcgg tttaccactt gtgtccggcg
      361 gcgagggtca gcgcgatcgc aacgagcggt ccgatcgtca gcgcgagtcg ccgggttcgg
      421 gtgatgaggc tggccatctg ggtgggctcc gatctgatgg ggtatgagtc cagtccacca
      481 tccatgaatg aaggtggagc ccgagactag acccgtgccg ccgacgttca accgacccga
      541 aggtactgga ggccatcccc cagcggtacc atgacccgac cgggaccacc ccggaccacc
      601 ccggacccgc gacaggattc gtccccgcgc ggtagattcg cgcgacattt cccaggcggt
      661 catcccgcag cccttccaga ggtattcgtc cccgatgaca cacgcccgac acctggtccc
      721 cctcctgctc gccgtcgcgg tcggcgcgag cgccgccgcc tgcgtgacgg cgacgcccgg
      781 ctggacctac gcgcccgccc cgtccgtgac gccgccgccc agcgcggccc cgtcgggatc
      841 ggccggcagc ccggccccaa gcgaggccac cgggggcgtc cagatcagcg ccctgaacgt
      901 cgcgttcgag cagaccagcg tgaccgcccc cgccggcaag gcgttccaga tcgccttcga
      961 caacaaggac gccgggacgc cccacaacgt cgcgatccac aaggacagcg ccacgggcgc
     1021 cgaggtgttc aagggcgaga tcgtcaccgg ccccgcgacc aagacctacg acgtgccggc
     1081 gctcgatgcg ggaacctacg cgttcgtctg caccgtgcat cccaacatga ccggcacgct
     1141 cacggtgcag tagggcggtc ccgtcgatga cgccgaccgg cgagcagctc tgctacaccg
     1201 acgcgtacct gcgatcggtg gaggcacgcg tcgcctctgt cgagacgggt gactcgacgc
     1261 tgctcgtgct cgaccggacc gtcttctacc ccggtggtgg cgggcagccg tccgaccgtg
     1321 gtctcctcct gcgagcctcg gacggccgct cctggacggt ccgggccgcc cgcaaggccg
     1381 ggggcgacat cgtgcatgag ctcgagcccg gcgacggcga tccgccggcg gtcggcgacg
     1441 tcctccgcgt cgacctcgac tgggcgaggc ggctggccct gatgcggacg cataccgcgc
     1501 tgcacgccct gtgcggcgtg gtctggcgcg actacggggc gctcgtgacg ggcggcaaca
     1561 tggagccggg cagcggccgg atggacttcg agttcgagcg gatgtccggc gacctcgtcg
     1621 acgcgatcga ggccacggtg aacgcggagc tggcggccgc gcgtgacgtg cgggtggccg
     1681 tccttccgcg cgaggaggcc ttcgccattc ccgacctgat ccggaccaag atcaacctgc
     1741 tgccgccggg catcgagcag gtgcgcgtgg tcgaactggt ggggttagac ctgcaggcgg
     1801 atgggggtac gcacgtccac agcac
//
LOCUS       DATDDI010000257         3274 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_296730, whole genome shotgun sequence.
ACCESSION   DATDDI010000257 DATDDI010000000
VERSION     DATDDI010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296730"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VIU37_03650"
     CDS             complement(<1..436)
                     /locus_tag="VIU37_03650"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6013068.1"
                     /translation="MTARTPLPARILIPVANPMTAEELIRLGAAMLDKRAGELSALGI
                     VEVPEGMPLSEGATRARHARRLLQRVLDYAPDGTTIHPIVRIGRHAAEGIIEASGEQE
                     ADLIIFGWGGKIPNGRDGSAPTKFSPTIDEVVRDSPCDIAVVK"
     gene            complement(433..1806)
                     /locus_tag="VIU37_03655"
     CDS             complement(433..1806)
                     /locus_tag="VIU37_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013069.1"
                     /translation="MPQTVLTPAIREQITRLGKADIMVGIPSFKNAATIGYVVRAAQA
                     GLVQYFPDLHPVVVNSDAASPDGTGRVVVETEPPGYIEQILLVRPTNKLERVSLTYPE
                     IDGVGGKGAALRTIFEIAAALEVEALVVVDSDLRSIVPEWIELLAGPILKGGYDFVAP
                     LYARYKYDGTITNTVTYPLTRALYGHRIRQPIGGDFGVSGDLVKHYLTLDDWTDDVSK
                     FGIDIWMTTSALAGGFAVCQTRLGAKVHDPKDPGSDLGPMFRQVVGTILRLAVLHSKQ
                     WLPIRGSHDVPAYGFERIIDPPPLEVNTLRLLSEFHAGSLTLADTWRRMLAPATAEPV
                     LELAAEAGHLADVARTRLGLGGDVASNAATTLEMADAVAAFNFSDDLWARVVYDLVLA
                     ARNPQPSLETLVAALVPIYFGRVGSFIIENRHVTTDQAEDRVERQAREFELLKPYLVQ
                     RWDEARA"
     gene            complement(1859..2569)
                     /locus_tag="VIU37_03660"
     CDS             complement(1859..2569)
                     /locus_tag="VIU37_03660"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013070.1"
                     /translation="MTDARAVLTTLRPQAFGDGRPDRVLDPIVEPQWAGIRALAAVDA
                     GDPGKLASGGGALLDEDGERIDGYPEILDALAAAALSPGLILDGFLTKQAVQDSTGVY
                     LKVDVDTSVQSAIGHFFLGSRRNRAAEAAEQRAAIRRAETFEPGDVVTYVAFDLLWLD
                     GESLLDVPLLERRRLLDNVLAESSLVRRGAFVRPPIAGWIRSWRAQGFVGLTFRAANS
                     RYQPGATSPDWATAPMPR"
     gene            2600..>3274
                     /locus_tag="VIU37_03665"
     CDS             2600..>3274
                     /locus_tag="VIU37_03665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013071.1"
                     /translation="MTSAARSPVRGSGAGPRGLAGMTPSGRTIVPVSWALYDFGNTIF
                     SYAVVSGAIGLYLVKDAQFGERDGNVLLSIAVVVSVGLNAVVSPVLGAISDRGGRRLP
                     FLLFFTAVCVGPTFFIANVPAIVGLILFTIANFAYQAALIYYDATLKTVSTPAARGRL
                     SGIGTAIGYCGTVFVGLIIFLLKVPVEDRFRLSAFLFAAFAVPIFVFVREPVPRGPRL
                     TARDVVE"
BASE COUNT          441 a         1135 c         1177 g          521 t
ORIGIN      
        1 gcttgacgac cgcgatgtcg cacggggagt cgcggacgac ctcgtcgatc gtcggcgaga
       61 acttggtcgg cgcggagccg tcgcggccgt tggggatctt gccgccccag ccgaagatga
      121 tgaggtcggc ttcctgctcg cccgacgcct cgatgatccc ctcggcggcg tggcggccga
      181 tccggacgat cgggtggatc gtcgtcccgt cgggcgcgta gtcgaggacg cgttggagga
      241 gccggcgcgc gtgccgggcg cgcgtcgcgc cttccgacag cggcatcccc tcgggcacct
      301 cgacgatccc gagcgcggac agctccccgg cccgcttgtc cagcatcgcc gcgccaagcc
      361 ggatcagctc ctcggccgtc atcgggttgg cgaccgggat gaggatccgg gcgggcagcg
      421 gggtgcgggc ggtcatgccc tggcctcgtc ccagcgctgg acgagatatg gcttgagcag
      481 ctcgaactcg cgcgcctggc gctccacccg gtcctcggcc tggtccgtgg tcacgtggcg
      541 gttctcgatg atgaaactgc ccacccgccc gaagtagatc ggaacgagcg ccgcgacgag
      601 cgtctcgagg gatggctgtg ggttgcgcgc ggccaggacc aggtcgtata cgacccgggc
      661 ccacaggtcg tcggagaagt tgaaggcggc gaccgcgtcg gccatctcca gggtcgtggc
      721 cgcattggag gcgacgtcac cgccgagccc gagccgcgtc cgggcgacat cggccaggtg
      781 gccggcttcc gcggcgagtt cgagaaccgg ttcggccgtg gccggcgcga gcatccgccg
      841 ccacgtgtcc gcgagggtca gcgacccggc gtggaactcg gacagcagcc gcagtgtgtt
      901 cacctcgagc ggcggcgggt cgatgatccg ctcgaagccg tacgccggca cgtcgtggct
      961 gccgcggatc ggcagccact gcttcgaatg caggaccgcg agccgcagga tcgtcccgac
     1021 gacctgccgg aacatcggcc cgagatcgga gcccgggtcc ttggggtcgt ggaccttggc
     1081 cccgagccgg gtctggcaga ccgcgaaccc gccggcgagc gcggaggtcg tcatccagat
     1141 gtcgatcccg aacttgctga cgtcgtcggt ccagtcgtcg agcgtcaggt agtgcttgac
     1201 gagatcgccc gagaccccga agtcaccgcc gatcggctgg cggatccggt gcccgtacag
     1261 ggcccgggtc agcgggtagg tgaccgtgtt ggtgatcgtc ccgtcgtact tgtagcgcgc
     1321 gtatagcggg gccacgaagt cgtagccgcc cttgaggatc ggcccggcca gcagctcgat
     1381 ccactcgggg acgatcgagc gcaggtccga gtccacgacg accagcgcct cgacctcgag
     1441 cgcggccgcg atctcgaaga tcgtccgcag cgccgcgccc ttgccgccga cgccgtcgat
     1501 ctcggggtag gtcaggctga cccgttcgag cttgttggtc gggcggacga gcaggatctg
     1561 ctcgatgtag cccggaggct cggtctcgac cacgacccgg ccggtcccgt ccggcgaggc
     1621 ggcgtcggag ttgacgacga ccgggtggag gtccgggaag tactggacga gtcccgcctg
     1681 cgccgctcgg accacgtagc cgatcgtcgc ggcgttcttg aagctcggga tgccgaccat
     1741 gatgtcggcc ttgcccaggc gcgtgatctg ttcgcggatc gccggcgtca gcacggtttg
     1801 gggcacacac ccaccgtacc atcccgtccc gaggctgtca gccttcgcgc tggtccgatc
     1861 agcgcggcat cggcgcggtc gcccagtccg ggctcgtggc gccgggctgg tagcggctgt
     1921 tggcggcccg gaacgtcagg cccacgaagc cctgcgcgcg ccacgatcgg atccacccgg
     1981 cgatcggggg acggacgaac gccccgcgac ggacgaggct cgattcggcc agcacgttgt
     2041 cgagcaggcg gcggcgttcc agcagcggga cgtcgagcag ggactccccg tcgagccaga
     2101 ggaggtcgaa ggcgacgtag gtgacgacgt cgccgggttc gaacgtctcc gcccggcgga
     2161 tcgcggctcg ctgttcggcc gcttccgccg cgcgattccg gcgggagccc aggaagaaat
     2221 gcccgatggc gctctgcacg ctggtgtcca cgtccacctt gagatagacc ccggtgctgt
     2281 cctggacggc ctgcttggtc aggaacccgt cgaggatgag acccgggctg agggccgcgg
     2341 ccgcgagcgc gtcgaggatc tccgggtagc cgtcgatccg ctcgccgtcc tcgtcgagca
     2401 gggcgccgcc gcccgaggcc agcttgcccg gatcgccggc gtcgaccgcc gcgagggctc
     2461 ggatcccggc ccactgcggt tcgacgatcg ggtcgaggac gcggtccggg cgcccgtcgc
     2521 cgaaggcctg cggccgaagc gtcgtgagga ccgcgcgggc gtccgtcatc ggcccatcgt
     2581 acccggctaa gatcgcctcg tgacgagcgc ggcccggtct ccggttcgcg gatccggcgc
     2641 cggcccacgc gggctggcgg gcatgacgcc gagcgggcgg accatcgtgc ccgtctcctg
     2701 ggcgctgtac gacttcggga acacgatctt ctcctacgcg gtcgtgtccg gcgccatcgg
     2761 gctctacctg gtcaaggacg cccagttcgg cgagcgcgac ggcaacgtgc tgctgtcgat
     2821 cgcggtcgtg gtcagcgtcg gactgaacgc cgtcgtgtcg cccgtgctcg gcgccatctc
     2881 ggaccggggc gggcggcggc tgccgttcct gctgttcttc accgcggtct gtgtcggccc
     2941 cacgttcttc atcgccaacg tcccggcgat cgtcggtctg atcctgttca ccatcgccaa
     3001 cttcgcctac caggcggcac tcatctacta cgacgccacg ctcaagaccg tgagcacgcc
     3061 ggccgcgcgc ggccggctgt cggggatcgg caccgccatc ggctactgcg ggaccgtgtt
     3121 cgtcgggctg atcatcttcc tgctcaaggt cccggtcgag gatcgcttcc ggctcagcgc
     3181 gttcctgttc gcggccttcg ccgtcccgat cttcgtgttc gtccgcgaac cggtgccgcg
     3241 gggtccgcgg ctgaccgctc gcgatgtcgt ggaa
//
LOCUS       DATDDI010000258         1665 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_400836, whole genome shotgun sequence.
ACCESSION   DATDDI010000258 DATDDI010000000
VERSION     DATDDI010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400836"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..1653
                     /locus_tag="VIU37_03670"
     CDS             394..1653
                     /locus_tag="VIU37_03670"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEY6013072.1"
                     /translation="MPDPAVPVRTLLTAELLSIGSELTVGDTRDTNAGELARSLTSLG
                     VRVGRLTALPDTLDAVSEAFRLGIVRSDLVVSTGGLGPTPDDLTREAIAVVCGETPAV
                     DPELEAWLRELWRRRGLPFPELNLKQAWRIPSATILDNPNGTAPGWFVARPDGRVIVA
                     LPGPPREMRPMWANQAVPRLRAIGLGTEVAARTYRLTGIGESQVADLLGERLLRAANP
                     IVATYARTEAVDVRVSATAAPPRSAEELVDEAAASVLEQLGPYGWATGETTWSEAIGA
                     RLAELGWTLAAVEIGTGGSLSALFGDADWFRFDEILGEDAPAARAHEADGGLDADPGT
                     GSAPGTDLVRFARRARELGDADVGVAVRTRFRSGDTAVSIALSTPAAERQVSRVVFLT
                     GGLGRSRAALAAAAFVLEVLRGPAPEA"
BASE COUNT          209 a          614 c          635 g          207 t
ORIGIN      
        1 gatccgagca gccactcgga caggaacagc acgccaccga tcagcaggag gagacccgcg
       61 agcagcacca cggcgagcgc cagggcggcg aggcccacga tccggccgac ctcgccggcg
      121 atctcgccga tctcggtcct ggccagctcc acgtgggccc ggacgagggc cagcgccgcg
      181 tcgcgggtgg cgccgagctg ggcgcgcaga ccacgggcgg gcgggcgggc gccgtccggc
      241 gggcgctgat gcggtgggac cgaggtcgtg tcgtccaggg gtcgcgctcc gattgggggg
      301 cgccgggcag gcgcggagtt tcccggatga taccgcgccc cttcgcaccg tcggcagtgc
      361 cgttggtcac cgtggcgcgg tacgctggcg cgcgtgcccg accctgccgt gcccgtccgt
      421 acgctcctga ccgctgagct gctgagcatc ggcagcgagc tgaccgtcgg cgacacacgc
      481 gacaccaacg ccggtgagct ggcccgctcg ctgacctcgc tgggcgtccg cgtcggtcgc
      541 ctcaccgccc tgccggacac gctcgacgcc gtcagcgagg ccttccggct gggcatcgtc
      601 cgctccgacc tggtggtctc gaccggtggg ctgggcccca cccccgacga cctcactcgc
      661 gaggcgatcg ccgtggtctg cggcgagacg ccggcggtcg atccggagct cgaagcctgg
      721 ctgcgcgagc tgtggcgacg acgcggcctc cccttccccg agctcaacct caagcaggcc
      781 tggcggatcc cgtcggcgac gatcctcgac aaccccaacg ggacggcgcc cggctggttc
      841 gtggcgcggc ccgacggccg cgtgatcgtg gcgctgccgg gaccgccgcg cgagatgcgc
      901 ccgatgtggg cgaaccaggc ggtgcccagg ctgcgagcga tcggcctggg gaccgaggtt
      961 gccgcccgga cctaccggct gaccgggatc ggcgaatcgc aggtcgccga cctgctcggt
     1021 gagcgcctcc tgcgcgccgc caacccgatc gtcgcgacgt atgcgcgcac cgaggccgtg
     1081 gacgtgcggg tctccgcgac ggccgcgccc ccgcgctcgg ccgaggagct ggtggacgag
     1141 gcggcggcga gcgtgctcga gcagctcgga ccgtacggct gggccaccgg ggagacgacc
     1201 tggagcgagg cgatcggcgc tcgactggcc gagctcggat ggacgctcgc cgcggtcgag
     1261 atcgggaccg gcggcagcct gtcggcgctg ttcggcgatg ccgactggtt ccgcttcgac
     1321 gagatcctcg gcgaggacgc gcccgcggcc cgggcccacg aggcggacgg gggcctcgac
     1381 gcggatcccg gaaccggctc tgcacccggc accgacctgg tccgcttcgc acgccgggcg
     1441 cgggagctcg gcgacgccga cgtcggcgtg gccgtccgga cgcggttccg gagcggcgac
     1501 acggcggtct cgatcgccct gtccaccccg gcagccgagc gtcaggtcag ccgggtggtc
     1561 ttcctgaccg gcgggctcgg acgctcgagg gcggcactgg cagccgccgc gttcgtgctc
     1621 gaagtgctgc gaggcccggc ccccgaggcc tgacggataa tggcg
//
LOCUS       DATDDI010000259         3747 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_171956, whole genome shotgun sequence.
ACCESSION   DATDDI010000259 DATDDI010000000
VERSION     DATDDI010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171956"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VIU37_03675"
     CDS             complement(<1..295)
                     /locus_tag="VIU37_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013073.1"
                     /translation="MAGHWLAELDGRTLAVEVSASSANLGAGYDVLGLALAMVNRIEV
                     EVRVWSRGAIELEVDGEGRNELSEDRQNRFVRGLEATLRKARGELPEGLGWRIR"
     gene            complement(302..1384)
                     /gene="thrC"
                     /locus_tag="VIU37_03680"
     CDS             complement(302..1384)
                     /gene="thrC"
                     /locus_tag="VIU37_03680"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013085328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY6013074.1"
                     /translation="MAAPSGPPGLRPRLMDRYRRFLPVTDSTPSLTLGEGATPLVRAS
                     RLGATLGLSNLYLKIEGQNPTGSFKDRGMVVAVSKAAESGATAIVCASTGNTSASAAA
                     YGAAAGMEVIVVLPKGQIAVGKLLQALMAGARVVAIDGNFDAALGIVRALAEQDDHPV
                     TLVNSVNPFRIEGQKTAAFEVCDDLGCAPDILAIPVGNAGNITAYWQGFREYAEAGVV
                     DRTPRMWGFQAAGAAPLVVGHRIDHPDTIATAIRIGDPASWTRAIDARDRSGGRIDAV
                     TDDEILTAYRALARHEGIFCEPASAASVAGVTRAAAAGELDPDALVVCVLTGHGLKDP
                     TTAERQAVSVIEADASLGAVAVALGW"
     gene            complement(1384..2655)
                     /locus_tag="VIU37_03685"
     CDS             complement(1384..2655)
                     /locus_tag="VIU37_03685"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF004976.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEY6013075.1"
                     /translation="MTRAPMRVAVLGAGTVGREVVRALLDHPERLCATDGAPLVLAGV
                     ACRDLERARRAGVPAELLTDAPAHLVADPATDVIIELMGGDEPARTLVAAALSAGKPV
                     VTANKHVIAHHGPALEAIARRGDVALRFEAAVAGGIPVLGPLAADLAANEVRRVRGIV
                     NGTTNYILSAMAGEGRSYGDVLADAQARGYAEADPGGDVEGDDAVNKLVILARLAFGT
                     WIVPAAVVRRPPTVHGIGRPGITGVTDGELAAAAALGLAIKLVATARPAGDGILAGVL
                     PTAVPADSPFALTGGVLNRVEIDAEPLGSVALSGPGAGGAATSSAVLGDLVAVARGLS
                     STWAGRPPAVETAAQAFDPTAGTRDWFAFVPGNAGDAGPAEPAGAGLQVVAAAGGLAV
                     LVRSATLDDARTAVRPALPAGIDATLYPVDD"
     gene            2792..>3747
                     /gene="trpS"
                     /locus_tag="VIU37_03690"
     CDS             2792..>3747
                     /gene="trpS"
                     /locus_tag="VIU37_03690"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEY6013076.1"
                     /translation="MTELAPAPAPATDDVDRPRIFSGIQPSGVVHLGNDLGAVRNYVK
                     LQWEFEAIYCIVDYHALTSTHDPALLRARTREMAASLLALGLDPDVCTLFVQSHRPEH
                     TELAWLLATVTPVSWLERTPTYKEKVQLQPDDVNHGLLTYPVLQAADIVIYKASLVPV
                     GRDQAAHLELSREIVRAFNRRYGDTFPEAQAVFTEAPTVLGTDGARKMSKSLGNTIEI
                     LAEPDLIRKQVMSMVTDTQRILRTDPGRPEVCNVCQLHRFFGPDWEEIQDGERTARTG
                     CVDTKKLLAKRIIDHYAPARERYAELMAHPDEIDGILEAGADR"
BASE COUNT          534 a         1392 c         1354 g          467 t
ORIGIN      
        1 tccggatccg ccagccgagc ccctcgggga gctcgccccg ggccttgcgc agcgtcgcct
       61 caagcccgcg cacgaagcgg ttctggcgat cctcgctcag ctcgttgcga ccctcgccgt
      121 caacctccag ctcgatggcc ccccggctcc agacgcggac ctcgacctcg atccggttga
      181 ccatcgcgag ggcgaggccg aggacgtcgt agccggcccc caggttcgcc gacgaagccg
      241 acacttcgac ggcaagcgtc cggccgtcga gctcggccag ccagtggcct gccacgtccg
      301 cctaccagcc gagcgcgacg gcgacggcac cgaggctggc gtccgcctcg atcacggaca
      361 cggcctggcg ttcggccgtc gtcgggtcct tgaggccgtg gcccgtcagc acgcacacga
      421 ccagggcatc cgggtcgagc tcgccggcgg cggcggcacg ggtcacgccg gccacgctgg
      481 ccgccgaggc gggctcgcag aagatcccct cgtgccgggc gagtgcccga taggccgtca
      541 ggatctcgtc gtcggtcacg gcgtcgatcc ggccacccga tcggtcgcgg gcgtcgatcg
      601 ccctggtcca cgaggccgga tcgccgatcc ggatcgccgt cgcgatcgtg tccgggtggt
      661 cgatccggtg gccgaccacg agtggggcgg ctccggccgc ctggaagccc cacatccggg
      721 gcgtgcgatc caccaccccc gcctcggcat actcgcggaa cccctgccag taggcggtga
      781 tgttgccagc gttgcccacc gggatggcca ggatgtcggg ggcgcagccc aggtcgtcgc
      841 agacctcgaa ggcagcggtc ttctggccct cgatgcggaa cggattgacc gagttgacca
      901 gggtgaccgg atggtcgtcc tgctcggcca gggcgcgaac gatcccgagc gccgcgtcga
      961 agttgccgtc gatcgccacg acgcgggccc cggccatcag cgcctggagg agcttcccga
     1021 ccgcaatctg gccctttggc aggacgacga tcacctccat cccggcggcg gcgccgtagg
     1081 cggcggcaga cgccgacgtg ttcccggtcg aggcgcagac gatcgccgtg gcgccggact
     1141 cggcggcctt cgacacggcg acgaccatgc cccggtcctt gaacgagccg gtcgggttct
     1201 ggccttcgat cttgaggtag agattcgaca ggccgagggt ggcaccgagg cgggatgccc
     1261 ggacgagcgg ggtggccccc tcgccgaggg tgagcgacgg cgtggaatcc gtgaccggca
     1321 ggaaccgccg atagcggtcc atcagccggg gccggaggcc cgggggcccg gacggggcgg
     1381 ccatcagtcg tcgaccggat agagcgtggc gtcgatgccg gcggggagcg ccgggcggac
     1441 ggcagtccgt gcgtcgtcga gcgtcgcgga gcgcaccagc acggccagcc cgcccgccgc
     1501 cgccacgacc tgcaggccgg cccccgcagg ctcagccgga cccgcgtcgc ccgcgttgcc
     1561 cgggacgaag gcgaaccagt cgcgcgtccc ggcggtcggg tcgaacgcct gagccgccgt
     1621 ctcgaccgcc ggcggccggc cggcccaggt ggacgacagg ccgcgggcga ccgccacgag
     1681 atcaccgagc accgcgctgc tggtcgccgc cccacccgcg cccggcccgg acaaagcgac
     1741 cgagcccagc ggctcggcgt cgatctcgac gcgattgagc acgccgccgg tcagggcgaa
     1801 cgggctgtcg gccggcaccg ccgtcgggag cacgccggcg aggatcccgt cgccggccgg
     1861 gcgtgccgtc gccacgagct tgatcgccag gccgagcgcg gcagccgcgg ccagttcccc
     1921 gtccgtcacg ccggtgatcc ccgggcggcc gatcccgtgc acggtcggcg ggcgccggac
     1981 gaccgcagcg ggaacgatcc acgtgccgaa ggcgagccgc gccaggatga cgagcttgtt
     2041 gaccgcgtcg tcgccctcga cgtcgccgcc gggatccgcc tcggcatacc cgcgggcctg
     2101 ggcgtcggcc aggacgtcgc cgtagctccg cccctcgccg gccatcgcgc tcaggatgta
     2161 gttcgtggtg ccgttcacga tgccgcgcac gcggcggact tcgttggccg cgaggtcggc
     2221 ggccagcggt ccgagcaccg ggatcccgcc ggcgacggcg gcctcgaacc tgagcgccac
     2281 gtcaccgcgg cgggcgatcg cctcgagcgc gggaccgtga tgcgcgatga cgtgcttgtt
     2341 ggcggtcacc acgggcttcc cggcggacag ggccgcagcc accagcgtcc gggccggctc
     2401 gtcgccgccc atcagctcga tgatgacgtc ggttgccgga tccgccacga gatgggcggg
     2461 ggcatcggtc agcagctccg cggggacgcc ggcacgccgg gcacgctcga gatcccggca
     2521 ggcgacgccg gcgaggacca gcggcgcgcc gtcggtggcg cacaggcgct ccgggtggtc
     2581 gagcagcgcg cggacgacct cgcgtccgac cgtcccggcg ccgagcacgg cgacgcgcat
     2641 cggggcgcgg gtcatacggg ctccgcccgg cccgcgccgg cggatcgtgg ggacaacatc
     2701 gcggggaatg gtagcggacc ggttcgagcg atcgtgggcc gccggccggc gggtttcggg
     2761 tgagtggggt ccgctacact cgcgactcat gatgaccgag ctcgcaccgg cccccgcgcc
     2821 cgccaccgac gacgtcgatc gcccgcgcat cttctccggg atccagccgt cgggcgtggt
     2881 ccacctgggg aacgacctgg gcgccgtccg caactacgtc aagctccagt gggagttcga
     2941 ggcgatctac tgcatcgtcg actaccacgc gctcacgagc acgcacgacc cggcgctcct
     3001 gcgtgcgcgc acccgcgaga tggccgcgtc gctcctcgcc ctcgggctcg atccggacgt
     3061 ctgcacgctc ttcgtccaga gccaccggcc cgagcacacc gagctcgcgt ggctgctcgc
     3121 gacggtcacg ccggtcagct ggctcgagcg gaccccgacc tacaaggaga aggtccagct
     3181 ccagcccgac gacgtgaacc acgggctcct gacgtacccg gtcctccagg cggccgacat
     3241 cgtcatctac aaggcgtcgc tcgtcccggt cgggcgggac caggcggccc acctcgagct
     3301 gtcgcgggag atcgtccggg cgttcaaccg gcgctacggc gacacgttcc ccgaggccca
     3361 ggccgtcttc accgaggcgc cgaccgtcct gggcaccgac ggcgcccgga agatgtcgaa
     3421 gagcctcggg aacacgatcg agatcctcgc cgagcccgac ctgatccgga agcaggtgat
     3481 gtcgatggtg accgacacgc agcggatcct gcgcacggac ccggggcgcc cggaggtgtg
     3541 caacgtctgc cagctgcacc gcttcttcgg gcccgactgg gaggagatcc aggacggcga
     3601 gcggacggcg cgcaccggct gcgtcgacac caagaagctg ctcgccaagc ggatcatcga
     3661 ccactacgcg ccggcccggg agcgctatgc ggagctgatg gcgcacccgg acgagatcga
     3721 cgggatcctc gaagccgggg ccgaccg
//
LOCUS       DATDDI010000260         2697 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_421811, whole genome shotgun sequence.
ACCESSION   DATDDI010000260 DATDDI010000000
VERSION     DATDDI010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421811"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VIU37_03695"
     CDS             <1..244
                     /locus_tag="VIU37_03695"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEY6013077.1"
                     /translation="LRAIRQIVAAVDLAGMDIVEVSPPYDHAETTAMVANRAALEAIS
                     ALAVRRIAGKPVRWAGHELPPGRFPAGSPEHHGHPG"
     gene            254..1048
                     /locus_tag="VIU37_03700"
     CDS             254..1048
                     /locus_tag="VIU37_03700"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6013078.1"
                     /translation="MFDRPDPAAAEALARLYDLDLVDDPGDLDLYLALAARVEGPILE
                     LAVGTGRLAVPLAEAGYRVTGVDLDPAMLARARRHAAAAGSGVAERLTLVEADLVGLR
                     LPGAGTFGLAFIALNSLLVLPSRAAQRAALRTLADHLAPGGLAVVDVWIPDAEDLARF
                     DGRIMLEWPRLDPETGTIVTKVGSAQHDASSASVTTTTIFEEGGQGEPARRWIRRDQL
                     RLLSGDQLRGFAEDAGLAVELLAGDYGLGPMGPGTERAILVAIKGG"
     gene            1124..2275
                     /locus_tag="VIU37_03705"
     CDS             1124..2275
                     /locus_tag="VIU37_03705"
                     /inference="COORDINATES: protein motif:HMM:NF025001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6013079.1"
                     /translation="MPPSDQTRLLIVEDVPQVAQYIRGLLNAQARVKLLDVLTEGARA
                     IATINEVRPDVILVDALLQGRIKGPKLVEQIHEAKLGVPVIVLTVPQNPVDPDPSIGI
                     HGVLSMPFSGFDLMTRIAQVRKDFEALQSTGTSKVMTVFSPKGGVGKTTIAFNLAVAM
                     GQLDQRTVLVDGSLQFGDLRSLLKVPADAPSILDLPTDRIAESDLGDVLWRDPSGIDI
                     LLAPPRIEMAEMLTARDIEKILSLLRRVYSAIVIDMSCQLNDINLAFLDASDTIIEIV
                     TYDSTTIHSTIAIADTFRAIGYPASKVRYLINRADSAGGIDPGDLHRALGRVPEHKVV
                     SDGRLVVQSNNEGVPFVLANPAAQISQDLARTAVEILDAGRVAALAGRH"
     gene            2284..>2697
                     /gene="murI"
                     /locus_tag="VIU37_03710"
     CDS             2284..>2697
                     /gene="murI"
                     /locus_tag="VIU37_03710"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEY6013080.1"
                     /translation="MSDPRPIGVFDSGVGGLTVLREILRRSPAESTIYLGDNARTPYG
                     TRPDEEVVAFSTQSLDALAARDVKAIVVACNTSTAVALGALRRRYDLPILGVIRPGAS
                     AAALASRNRRVGVIATPATIRSHAYFTAIKDENPAV"
BASE COUNT          373 a         1020 c          917 g          387 t
ORIGIN      
        1 gcttcgagcc atccgccaga tcgtggccgc ggtcgatctg gccggcatgg acatcgtcga
       61 ggtctcgccg ccgtacgacc atgccgagac gaccgcgatg gtcgccaatc gcgccgcgct
      121 cgaggcgatc agcgccctgg ccgtgcgccg aatcgcgggc aagcccgtcc ggtgggccgg
      181 ccacgagctg ccgcccggcc ggttcccggc cggttcgccc gagcatcacg gccacccggg
      241 ctgagcggac cacgtgttcg accgtcccga tccagccgcc gccgaggcgc tcgcgcgcct
      301 gtacgacctc gacctggtcg acgacccggg cgacctcgac ctctatctcg cgctcgcggc
      361 ccgggtcgag ggacccatcc tcgagctcgc ggtcgggacc gggcggctcg ccgtccccct
      421 cgccgaggcc ggctaccggg tcacgggcgt cgatcttgat ccggcgatgc tcgcccgggc
      481 gcgccggcat gccgccgcgg ccgggtcggg cgtggccgag cggctgacgc tggtcgaggc
      541 cgacctggtc ggcctccggc tgccgggtgc cggcacgttc gggctcgcgt tcatcgcgct
      601 caactcgctg ctggtcctgc cgagccgggc ggcccagcgg gccgcgctcc ggaccctcgc
      661 cgaccacctc gcgcctggcg ggctggccgt cgtcgacgtg tggatcccgg acgccgagga
      721 cctcgcccgg ttcgacggcc ggatcatgct cgagtggccg cggctcgatc cggagaccgg
      781 gacgatcgtc accaaggtcg gctcggcgca gcacgacgca tcgtccgcgt cggtcacgac
      841 gaccacgatc ttcgaggagg gcggccaggg cgagccggcc cgccgctgga tccgtcgcga
      901 ccagctgcgg ctgctgtcgg gcgaccagct gcgcggcttc gccgaggacg ccgggctggc
      961 cgtcgagctg ctcgccggcg actacggcct tgggccgatg ggccccggca ccgagcgcgc
     1021 gatcctcgtc gccatcaagg gcggatgacg gtcccttcgt cccgttccgg atcgggaccg
     1081 tcgtgtccct cccacacacg accctcgtgg tatcgtcgag ccgatgccac cgagtgacca
     1141 gacgcgcctg ctgatcgtcg aggacgtgcc gcaggtcgcc cagtacatcc gggggctgct
     1201 caacgcccag gctcgagtga agctcctcga cgtcctgacc gagggggcgc gcgcgatcgc
     1261 gaccatcaac gaggtccgtc ccgacgtcat cctcgtcgac gccctcctcc agggccggat
     1321 caaggggccg aagctcgtgg agcagatcca cgaggccaag ctcggcgtcc ccgtcatcgt
     1381 cctgaccgtc ccgcagaacc cggtcgaccc ggacccgtcg atcggcatcc acggggtgct
     1441 gtcgatgccg ttctcgggct tcgacctgat gacccggatc gcgcaggtcc gcaaggactt
     1501 cgaggccctc cagtcgaccg gcacctcgaa ggtcatgacg gtcttctcgc ccaagggcgg
     1561 cgtcggcaag accacgatcg cgttcaacct ggcggtcgcg atgggccagc tcgaccagcg
     1621 cacggtgctc gtcgacggaa gcctccagtt cggggacctg cgctcgctgc tcaaggtgcc
     1681 ggccgacgca ccgtccatcc tggatctccc gacggaccgg atcgccgagt ccgacctcgg
     1741 cgacgtgctc tggcgcgacc cgtccgggat cgacatcctg ctcgccccgc cgcgcatcga
     1801 gatggccgag atgctcacgg cccgggacat cgagaagatc ctgtcgctgc tccggcgggt
     1861 ctacagcgcg atcgtgatcg acatgtcctg ccagctcaac gacatcaatc tcgcgttcct
     1921 cgacgccagc gacacgatca tcgagatcgt gacctacgac tcgacgacga tccacagcac
     1981 gatcgccatc gccgacacgt tccgggcgat cggctatccc gcctccaagg tccgctacct
     2041 gatcaaccgg gcggactcgg ccggcgggat cgatccgggc gacctccacc gggccctcgg
     2101 ccgcgtcccg gagcacaagg tcgtgtccga cgggcggctc gtggtccagt ccaacaacga
     2161 gggcgtgccg ttcgtgctgg ccaacccggc cgcccagatc agccaggacc tggcgcggac
     2221 cgcggtcgag atcctcgacg cggggcgggt cgcggcgctc gccgggcggc actgaccgac
     2281 accatgtccg acccgcggcc gatcggggtc ttcgactcgg gcgtgggcgg gctcacggtc
     2341 ctccgcgaga tcctgcgccg gtcgccagcc gaatcgacga tctacctcgg cgacaacgcc
     2401 cggaccccgt acggcacccg tccggacgaa gaggtcgtcg cgttctccac gcagtccctg
     2461 gacgcgctgg cggcgcgcga cgtcaaggcg atcgtggtcg cctgcaacac gtccacggcg
     2521 gtcgcgctgg gcgcgctgcg gcgccgctac gacctgccga tcctcggcgt gatccggccg
     2581 ggcgcgtcgg cggcggccct cgcgtctcgc aaccggcggg tgggggtcat cgccacgccg
     2641 gcgacgatcc ggtcgcacgc ctacttcacg gcgatcaagg acgagaaccc ggcggtc
//
LOCUS       DATDDI010000261         2289 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_338502, whole genome shotgun sequence.
ACCESSION   DATDDI010000261 DATDDI010000000
VERSION     DATDDI010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338502"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1250)
                     /locus_tag="VIU37_03715"
     CDS             complement(<1..1250)
                     /locus_tag="VIU37_03715"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6013081.1"
                     /translation="MSTRRSRSVLMVLYFFPPLGGISMSRNVRNVQYLPRHGWRPAVL
                     TPSNAAYHLKDPSSLDLIPEGTKVIRVPSIEAGHVRSFLIDLLAVLARIRRSAPAPAA
                     APSRTESTGSAGSGRGMGRLESARRLLFFPDDQIGWLPFAVVAGLRAHRADPFDAIYS
                     TSSPITSHLVAGIIKRWTGLPWIAEFRDPWLGNALAAPLPWIHRRLRVKLERWIVRTA
                     DRVVGVSPGITELYRQRYPGAPEMVTITSGYDRGERRPPVRRDPADDRYRIVYTGTLD
                     RPEELRIFLEGVEGLLTRRPELAARLTIDFFGAVSDACRATADRFALGNAGGAVHYRG
                     FVPRREAMDALASADAALILLGAGPGMGLFIGGKLFDYLGQDRQILAMLPQGDSRDIL
                     LSLDWGVVCDPDPADVERAIERLI"
     gene            complement(1355..>2289)
                     /locus_tag="VIU37_03720"
     CDS             complement(1355..>2289)
                     /locus_tag="VIU37_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013082.1"
                     /translation="GMAGLLAPYGPGRYHQSVVGRLRLTASAWRHTWATPPPAGAGSS
                     VRVSSVTGLLAALADDAVGEIVVANGTYHVSTAASQAPDSLWIGARYAGRTRPVTVRA
                     ETTGGVTFSGGGATAFGGLSFEAGAHDQTWDGFVFADGQPTQTGVITFGGYAGLAAPH
                     HISLRNISLAGSLTTPSGGATDGGVYFSQAVGGPHDITIDGLSVDGAGGLDFAVQFYH
                     SSAGNPNAWNVSLRHLRVSGTQQAIILWDPTVHDIAIEDSTISAAELSAIRYEKGGTL
                     TVRRTSSTGSGVAGFSSTLGPNPPEVTFIDSSLQ"
BASE COUNT          349 a          782 c          831 g          327 t
ORIGIN      
        1 tcgatcagtc gttcgatcgc ccgttcgacg tcggcgggat cggggtcgca gacgaccccc
       61 caatccaggc tcaggaggat gtccctcgag tcgccctgcg gcagcatcgc caggatttgt
      121 cgatcctggc cgagatagtc gaacagcttg ccgccaatga acaggcccat gccgggaccc
      181 gctccgagca ggatcagcgc ggcgtcggcg ctcgccagcg catccatggc ctcgcgacgt
      241 ggaacgaagc ctcgatagtg gaccgctcca ccggcattgc ccagcgcgaa ccggtctgcc
      301 gtcgcacgac acgcatcgga gacggcgccg aagaagtcga tcgtcaggcg cgccgccagc
      361 tcggggcgtc gcgtgaggag tccctcgacc ccttcgagga agatccgcag ctcctccggc
      421 cggtcgagcg ttccggtgta gacgatccga taccggtcgt ccgctggatc gcggcggacg
      481 gggggccgcc gttcgccgcg atcgtacccg ctcgtgatgg tgaccatctc cggcgcgccg
      541 ggatagcgct gccgatagag ctcggtgatg ccgggcgaga cgccgaccac gcgatccgcc
      601 gtccgcacga tccagcgttc aagtttcacc cgcagccgtc ggtggatcca cggcagcggt
      661 gcggcgagcg cgttgccgag ccatggatca cggaactccg cgatccatgg caggccggtc
      721 cagcgcttga tgatgccggc gaccaggtgt gacgtgatcg gcgaagacgt cgagtagatg
      781 gcatcgaacg gatcggcgcg atgcgctcgc aggccggcca ccacggcgaa cgggagccag
      841 ccgatctggt cgtcagggaa gaacaggagc cggcgcgcgg actcgagccg gcccattccc
      901 cggccgctgc cggcgctgcc cgttgattcg gtgcgcgacg gcgcggctgc aggcgctgga
      961 gcggagcgcc ggattcgggc aagcacagcc aggaggtcga tcaggaacga gcgcacgtgc
     1021 ccggcctcga tcgatggcac ccggatgacc ttcgtcccct cggggatgag atcgagcgat
     1081 gacggatcct tcaggtggta ggcggcgttg ctcggcgtca ggacggccgg tctccagccg
     1141 tgcctcggca ggtactggac gtttcgcacg ttgcgggaca tcgagatgcc gccaagcggc
     1201 ggaaagaagt acagcaccat gaggacagaa cgcgatcggc gcgtggacat cggccggagt
     1261 gtagcggctc gtcccgcgga cccaccaagc gggccctgcc tggacctcag accggctggg
     1321 catgccgccg tcctgaccgc tcaggcgggc cgcctcactg caggctgctg tcgatgaacg
     1381 tgacctcggg cgggttgggc ccgagggtcg agctgaagcc ggccaccccg ctgccggtcg
     1441 agctggtccg gcggacggtc agggtcccgc ccttctcgta gcggatggcg ctcagctccg
     1501 ccgcgctgat cgtcgaatcc tcgatggcga tgtcgtggac ggtcgggtcc cacaggatga
     1561 tcgcctgctg ggtgccgctc acccggagat ggcgcaggct gacgttccag gcgttggggt
     1621 tgccggcgct ggagtggtag aactggacgg cgaagtcgag cccgcccgcg ccgtcgaccg
     1681 acagcccgtc gatggtgatg tcgtgcggcc cgccgaccgc ctggctgaag tacaccccgc
     1741 cgtcggtcgc cccgcccgac ggggtggtca gcgagccggc caggctgatg ttgcgcaggc
     1801 tgatgtggtg gggcgcggcc agcccggcat agccgccgaa ggtgatcacc ccggtctggg
     1861 tcggctggcc gtcggcgaac acgaagccgt cccaggtctg gtcgtgggcg ccggcctcga
     1921 agctgagccc gccgaaggcg gtcgccccgc cgcccgagaa ggtcaccccg ccggtcgtct
     1981 cggcgcggac cgtgaccggc cgggtccggc cggcgtagcg ggccccgatc cagagcgaat
     2041 cgggcgcctg gctggcggcc gtgctgacgt ggtaggtgcc attcgcgacg acgatctcgc
     2101 cgaccgcgtc gtcggccagc gccgcgagca ggccggtcac cgagctcacc cggaccgagc
     2161 tgcccgcgcc ggcgggcggc ggcgtggccc aggtatgcct ccacgctgac gccgtcaagc
     2221 gcaggcgccc gacgacggac tggtggtatc gacccggtcc gtaaggcgcg aggagcccgg
     2281 ccattccca
//
LOCUS       DATDDI010000262         1541 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_234387, whole genome shotgun sequence.
ACCESSION   DATDDI010000262 DATDDI010000000
VERSION     DATDDI010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234387"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..>1541)
                     /locus_tag="VIU37_03725"
     CDS             complement(105..>1541)
                     /locus_tag="VIU37_03725"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF002068.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEY6013083.1"
                     /translation="EGMKASLVSREVVADSIELVARGHLFDGLVCLVGCDKTLPGAAM
                     ALARLDIPGLALYNGTIYPGTYMGRNVDIVSVYEAIGAYRAGSITLEELHGIENAACP
                     GAGACGGQYTANTMSTVLEFIGLSPAGLNGIPAEDPKKDEAARRSGELVMDLVRRDVR
                     PKHIVTRAALENGIASVAATGGSTNGVLHLLAIAHEFGIPLDIDDFGAIADRTPIVGD
                     MKPGGRYSASEMYDAGGVGLVMRELLKRDLLHGDAGTVDGRTIAQIASATVETPGQQV
                     VVPIETPLKPTGGLAILRGSLAPEGCVVKLAGHERRLHRGPARVFDSENACYDAVRAQ
                     RIKPGDVVVIRYEGPVGGPGMQEMLQVTAALVGEGLGDSVALLTDGRFSGGTHGLMIG
                     HVAPEAALGGPIAVVEEGDEIVIDVDRKALDLDVPPDEVARRFTRWSPPAARYRGGVM
                     AKYAALVGSASQGAVTTGSRMTANLRAR"
BASE COUNT          208 a          557 c          551 g          225 t
ORIGIN      
        1 gaacacgtcg tgctcgccga tccgcgccca ggcggcatcg accgtcgccc agtcgacgtc
       61 ctggggcgag gtcttgatcc cgatcgcgac cgcgtgccgg cgtgtcaccg cgcccggagg
      121 ttggcggtca tccgcgagcc ggtcgtgacc gcgccctgcg aggcggagcc gacgagcgcg
      181 gcgtacttgg ccatcacgcc tccccggtag cgagcggcgg gcggcgacca tcgagtgaag
      241 cggcgggcga cctcgtccgg cgggacgtcc aggtcgagtg ccttgcggtc gacgtcgatg
      301 acgatctcgt cgccttcctc gacgaccgcg atcggcccgc ccagcgccgc ttccggcgcg
      361 acgtggccga tcatcaggcc gtgggtgccg cccgagaagc ggccatcggt cagcagggcg
      421 accgaatcgc cgagtccttc gccgacgagc gccgcggtga cctggagcat ctcctgcatg
      481 ccggggccgc cgaccggacc ctcgtagcgg atgaccacga cgtcgccggg cttgatccgc
      541 tgggcccgga ccgcgtcgta gcacgcgttc tccgaatcga agacgcgcgc cgggccgcgg
      601 tgcagccgcc gctcgtgacc ggcgagcttc acgacgcagc cctcgggcgc gagcgagccg
      661 cggaggatgg ccaggccgcc ggtcggcttg agcggggtct cgatcgggac cacgacctgc
      721 tggcccggcg tctcgacggt cgcgctcgcg atctgcgcga tcgtccggcc gtcgaccgtc
      781 cccgcgtcgc catggagcag gtcgcgcttg agcagttcgc gcatgaccag cccgacgccg
      841 cccgcgtcgt acatctcgga ggccgagtag cgcccgcccg gcttcatgtc gccgacgatc
      901 ggggtccgat cggcgatcgc gccgaagtcg tcgatgtcga gcgggatgcc gaactcgtgg
      961 gcaatcgcca gcaggtggag gacgccgttg gtcgagccgc cggtcgccgc gaccgaggcg
     1021 atcccgttct cgagcgccgc gcgcgtgacg atgtgctttg gccggacgtc gcgccggacg
     1081 aggtccatca cgagttcgcc cgagcgccgc gcggcctcgt ccttcttcgg atcctcggca
     1141 gggatgccgt tgaggccggc cggcgacagg ccgatgaact cgagcacggt gctcatcgtg
     1201 ttggcggtgt actggccgcc gcaggcgccc gcgccggggc acgcggcgtt ctcgatccca
     1261 tgcagctcct cgagcgtgat cgagcccgcc cggtacgccc cgatcgcctc gtagacgctg
     1321 acgatgtcga cgttgcgtcc catgtacgtg cccgggtaga tcgtcccgtt gtagagcgcc
     1381 aggccgggga tgtcgaggcg cgccaacgcc atcgccgcac cggggagcgt cttgtcgcag
     1441 ccgaccaggc acacgagacc gtcgaacagg tggccgcgcg cgaccagctc gatcgagtcg
     1501 gcgaccactt cgcggctgac gagcgaggcc ttcatcccct c
//
LOCUS       DATDDI010000263         1693 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_546730, whole genome shotgun sequence.
ACCESSION   DATDDI010000263 DATDDI010000000
VERSION     DATDDI010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546730"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VIU37_03730"
     CDS             <1..654
                     /locus_tag="VIU37_03730"
                     /inference="COORDINATES: protein motif:HMM:NF014799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6013084.1"
                     /translation="TSHQGMFTLTAQRQLPNLVIASPKDEQELRSLLHTALAQDHPFA
                     LHYPRDAGFGLAPIEPALIPIGRGEVLREGRDLLFVGFGPIVARAIEAADALEAEGWS
                     TGVINARFARPLDRQLILDQARGKRLVVTFEESVVTGGFGSGVLELLEEARLADPAYR
                     DVALRVVGIPGDRFVDHGSVSDLRRVLRLDAPGLAEQVRETLATLRATPGRSEVPAG"
     gene            complement(669..1049)
                     /locus_tag="VIU37_03735"
     CDS             complement(669..1049)
                     /locus_tag="VIU37_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013085.1"
                     /translation="MRSKRPFRAVAIMLLLVSAFGGLSVGIPLLFAMLTDPTLIRPGG
                     ASVIVPALFLAYGLLSLAGAIWLLSGWARAIPVVVVPQASVAIALLWVHVAIVADASL
                     LIVAGIAGGATLCALADRAFGGAA"
     gene            1188..>1693
                     /locus_tag="VIU37_03740"
     CDS             1188..>1693
                     /locus_tag="VIU37_03740"
                     /inference="COORDINATES: protein motif:HMM:NF013856.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEY6013086.1"
                     /translation="MSPAAAARIPRVRLDQLLVERGLAESRARAQALVLAGKVGVGEG
                     DAARRDRKAGDLVPADIALDVAAPEPYVSRGGHKLAAALDAFAIHPAGLVCLDVGSST
                     GGFTDVLLQRGASRVYALDVGRGQLAETLRRDPRVVSMERTNARALTASSLPESIALA
                     VIDVSFISL"
BASE COUNT          233 a          623 c          623 g          214 t
ORIGIN      
        1 acgagccacc aggggatgtt caccctgacc gcccagcgcc agctgccgaa tctcgtgatc
       61 gcgtccccga aggacgagca ggagctccga tcgctgctgc acaccgcgct cgcccaggac
      121 cacccgttcg cgctgcacta cccgcgcgac gccgggttcg gcctggcgcc catcgagccg
      181 gcgctgatcc cgatcggacg cggcgaagtg ttgcgtgagg gtcgcgacct gctgttcgtc
      241 ggcttcgggc cgatcgtggc ccgggcgatc gaagcggccg acgcactcga ggccgagggc
      301 tggtcgaccg gcgtgatcaa cgcccggttc gcccggccgc tggatcgcca gctgatcctc
      361 gaccaggccc gcggcaagcg cctggtcgtg accttcgagg agagcgtcgt cacgggtggc
      421 ttcggcagcg gcgtcctgga gctgctcgag gaggcgaggc tggccgaccc ggcctaccgc
      481 gacgtcgccc tgcgcgtcgt cggcatcccc ggcgaccgct tcgtggacca tggctccgtg
      541 tcggacctcc gccgcgtgct ccggctcgac gcgccgggtc tggccgagca ggtccgcgag
      601 accctggcga cgctccgggc gacgcccggc cgttcggagg tcccggccgg ctgacccggg
      661 cggcccggct aggcggcgcc tccgaacgcc cggtccgcga gcgcacacag cgtggcgccg
      721 ccggcgatcc ccgcgacgat gagcagcgac gcgtcggcga cgatcgcgac gtggacccac
      781 agcagggcga tcgcgacgct tgcctgcggg acgaccacca ccgggatcgc ccgagcccag
      841 ccggaaagca gccagatcgc gcccgcgagc gacagcaggc cgtacgcgag gaacagtgcc
      901 ggcacgatca cgctcgctcc gcccggccgg atcagtgtcg ggtccgtgag catcgcgaac
      961 aggagcggga tcccgaccga caggccgccg aacgcggaca cgagcagcag catgatggcc
     1021 accgcgcgga acgggcgctt gctccgcatc atcgggagcc gatgcgtccc aatccgccgg
     1081 gcggcgcgat ggccggatgc ggccggggcg gcgtggccac ggagacctcc agttcggacc
     1141 ggcgatcggg tgagtcccgg tgaagcgggc tgtgcaacga tagacaggtg agccccgctg
     1201 ccgctgcccg gatcccccgc gtcaggctgg accagctgct ggtcgaacgc ggcctggccg
     1261 aatcgcgcgc ccgggcccag gcgctggtgc tggccggcaa ggtcggggtg ggggagggcg
     1321 acgccgccag gcgcgaccgg aaggccggcg acctcgtccc ggccgacatc gcgctcgacg
     1381 tcgcggctcc ggagccctac gtcagccgcg gcggccacaa gctcgcggcg gcgctcgacg
     1441 ccttcgcgat ccacccggcg ggcctcgtct gcctcgacgt cggatcgtcg accggcggct
     1501 tcaccgacgt cctgttgcag cgcggcgcga gccgggtcta tgcgctcgac gtggggcgcg
     1561 gccagctggc cgaaaccttg cgccgggatc cgcgggtcgt gtcgatggag cggacgaacg
     1621 cccgggccct gacggcgtcg agcctgccgg agtcgatcgc gctggccgtc atcgacgtgt
     1681 cgttcatctc gct
//
LOCUS       DATDDI010000264         1975 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_380232, whole genome shotgun sequence.
ACCESSION   DATDDI010000264 DATDDI010000000
VERSION     DATDDI010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380232"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /locus_tag="VIU37_03745"
     CDS             <1..570
                     /locus_tag="VIU37_03745"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013087.1"
                     /translation="LTRLPLGDWRARIATGFQDFARFEFVARQTVGVGDLPKVDDEPA
                     VLAALGRARADDVVARLEGGLSTQLGKSYADGTELSGGQWQKLALGRAMMRELPLLLI
                     LDEPTSALDALAEHLLFERYAEGARRVGRATGGITVLVSHRFSTVRMADLIRVVDGGR
                     IVEAGDHATLLRSGGLYAELYELQASAYG"
     gene            complement(614..1114)
                     /locus_tag="VIU37_03750"
     CDS             complement(614..1114)
                     /locus_tag="VIU37_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013088.1"
                     /translation="MHTTPTPAPISHVDHHERRRQLHPARLGLAGVCLALAGALAACS
                     SGTATTGPGGSVALPSVELPSGAASAVASAGTQAGLSALDQVDSAIAANQTAAGLSAD
                     DVTALKTLTASIRTALQTGDTTSARTAIDELSSKVGAMSSTLTSDAGKQLTDAVAALK
                     AALAGS"
     gene            complement(1293..>1975)
                     /locus_tag="VIU37_03755"
     CDS             complement(1293..>1975)
                     /locus_tag="VIU37_03755"
                     /inference="COORDINATES: protein motif:HMM:NF027964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6013089.1"
                     /translation="EFAPNFSIWTTIEECLNPPVIWEKDRGWYTTAPFSEPEVFDFPE
                     GIGPVECVNVEHEEVLLVPRWVDCGRVTFKYGLGEDFIRVLKTIKMLGLDNKNKIRVG
                     RVEVAPRDVVAACLPDPAHLGDRMFGKTCAGTWVKGEKDGRPREVYLYQVADNETCMA
                     RYGVQAVVWQTAVGPVIAMELLAAGTWQGAGVLGPEAFDPDPFMELMPAFDFPYGMRE
                     MTPAASGG"
BASE COUNT          272 a          678 c          728 g          297 t
ORIGIN      
        1 ctgacccggc tgccgctcgg cgactggcgc gcccggatcg ccaccggatt ccaggatttc
       61 gcacggttcg agttcgttgc gcgccagacg gtcggggtcg gggacctccc gaaggttgac
      121 gacgagccgg ccgtcctcgc cgccctcgga cgggctcggg ccgacgatgt cgtggcgcgg
      181 ctggagggcg gtctctcgac ccagctcggc aagtcgtacg cggacggcac ggagctgtcc
      241 ggcgggcagt ggcagaagct ggccctcggc cgggcaatga tgcgcgagct gccgctgctg
      301 ctgatcctcg acgagccgac gtcggcgctc gacgcgctgg ccgaacacct gctgttcgag
      361 cgctacgccg aaggtgcccg acgcgtcggg cgggccacgg gcgggatcac agtcctcgtg
      421 tcgcaccggt tctcgaccgt gcgcatggcg gacctgatcc gggtcgtcga cggcggccgg
      481 atcgtggagg ccggcgatca cgcgacgttg ctgcggtccg gcggcctgta cgcggagctg
      541 tacgagctcc aggccagcgc ctacgggtga cgcgcgagac gcccggccca tcggccgggc
      601 gtctcggcac ggatcagctg cccgcgaggg ccgccttgag cgcggcgacg gcgtccgtca
      661 gttgcttgcc cgcgtcggag gtcagggtcg acgacatcgc gccgaccttg ctcgagagct
      721 cgtcgatcgc ggtgcgggcc gacgtagtgt cgccggtctg gagtgccgtc cggatcgatg
      781 ccgtcagggt cttgagggca gtcacatcgt cggcggacaa cccggccgcc gtctggttgg
      841 cggcgatcgc gctgtcaacc tggtcgagcg cgctcagccc ggcctgcgtt ccggcgctgg
      901 ccacggcgga ggccgcgccg ctgggcagct cgacgctcgg cagcgcgacc gagccaccgg
      961 gtccggtggt cgcggtcccg gacgaacagg ccgcgagggc gccggcaagc gcgaggcaga
     1021 cgccggcgag gccgagccgt gcagggtgca gttgtcgacg gcgctcgtgg tggtcgacgt
     1081 gcgaaattgg tgcgggagtc ggtgtcgtat gcatgtgccg accgtaggcc gcgggcacgg
     1141 cgtcgcggac aaccagccag gcgggcggcg ttcaatcggg atcgcaaacg ggttgcagac
     1201 ccatcggcga tcggacgctg atcatgtcag ccggccgtcc gccccggtgc tcgaggtcct
     1261 gggcgggcgg cgccgtcagc cgcgcggcgc cgtcagccgc ctgacgcggc cggcgtcatc
     1321 tcgcgcatcc cgtacgggaa gtcgaacgcg ggcatgagct ccatgaacgg atccgggtcg
     1381 aacgcctccg gcccgaggac gcccgcgccc tgccacgtgc ccgccgcgag cagctccatc
     1441 gcgatgacgg ggcccaccgc cgtctgccag accacggcct gcacgccgta gcgggccatg
     1501 cacgtctcgt tgtcggcgac ctggtagagg tagacctcgc gtggccggcc gtccttctcg
     1561 cccttcaccc aggtgccggc gcaggtcttg ccgaacatcc ggtcgcccag gtgggcagga
     1621 tccgggaggc acgcggcgac gacgtcgcgc ggcgcgacct cgacccgacc gacgcggatc
     1681 ttgttcttgt tgtcgagacc gagcatcttg atcgtcttga ggacgcggat gaagtcctcg
     1741 ccgagcccgt acttgaaggt cacgcgccca caatccaccc agcgcggcac gagcaggacc
     1801 tcctcgtgct cgacgttgac gcattcgacg gggccgatcc cttccgggaa gtcgaacact
     1861 tcgggctccg agaagggggc ggtcgtgtac cagccgcggt ccttctccca gatgaccggc
     1921 gggttgaggc actcctcgat cgtcgtccag atcgagaagt tgggggcgaa ctcgt
//
LOCUS       DATDDI010000265         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_567349, whole genome shotgun sequence.
ACCESSION   DATDDI010000265 DATDDI010000000
VERSION     DATDDI010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567349"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..1105
                     /locus_tag="VIU37_03760"
     CDS             242..1105
                     /locus_tag="VIU37_03760"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygenase MpaB family protein"
                     /protein_id="HEY6013090.1"
                     /translation="MERGDAGLYGPGSEAWRLNREAMLLLGAGPRALLMQIAHPAVAA
                     GVDQHSDFRADPWRRLAATLRSYLTIVYGTTAVARAEIRRLNALHRGIVGAGYSARDP
                     ELSTWVHATLVDSTIVAFDAWIEPLPRARRAAFYLETRPIGRAFGVPDARLPADIDAF
                     DAYLGEMLAPGGPVQVSPTARDLAATILHPPLAPLARWLPPGAGAATVLGRVPAVAYD
                     WTLWPAVGLLPASIRADYGLSWGPRERLVTRWLVAGWSAWRPFVPTGFRQMPQALAAD
                     RRIEASDPTGG"
     gene            complement(1142..>1533)
                     /locus_tag="VIU37_03765"
     CDS             complement(1142..>1533)
                     /locus_tag="VIU37_03765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013091.1"
                     /translation="GHEPAEWREAVVHRVDRAAGGAEAAADFVARFVMGLRRTSRCPT
                     ARLDRSIYDYSERCYFETIYIQGGNLLDTTRRRMGSTAFWAALRGYVAAHRGGLSSTR
                     VLLDALDDATSVDLRATLFAVRFPGLY"
BASE COUNT          208 a          549 c          550 g          226 t
ORIGIN      
        1 cgcggccagg acaggccggc ctgctcgcgc acggcccgga tcagcaggac gaagaggcgc
       61 gccggctggc ggcggtagta cgccttccac atccgggtct cgaccctggc cagctcgtcg
      121 gggtcgaaat ccctgcccca atgcgtcgcc gtgcccatcc gccaacgtcc ctcctgtcga
      181 tcggcagctt gccgccatgg gtacgcgcgt gtcgagccgc cggatgatga caatggtcgc
      241 gatggaacgc ggcgacgcgg gactgtacgg tccgggatcg gaggcctggc ggctcaaccg
      301 ggaggcgatg ttgctgctcg gcgctggccc gcgtgcgctc ctgatgcaga tcgcacaccc
      361 ggcggtggcc gccggcgtgg accagcactc cgatttccgc gcggatccat ggcggcggct
      421 ggcggccacg ttgcggagct acctcacgat cgtgtacggg acgaccgcag tcgcgcgggc
      481 ggagatccgc cggctcaatg cgctgcatcg cgggatcgtc ggggcgggct attcggcgcg
      541 cgacccggag ttgtccacgt gggtccatgc caccctcgtc gactcgacga tcgtcgcctt
      601 cgacgcctgg atcgagccgc tgccacgcgc tcgacgcgcg gcgttctacc tggaaacgcg
      661 accgatcgga cgcgccttcg gggtgccgga tgcgcgactg cctgcggaca tcgacgcgtt
      721 cgacgcgtat ctgggcgaga tgctggcgcc aggcggcccc gtccaggtgt cgccgacggc
      781 gcgcgacctg gccgcgacca tcctccatcc gcccctcgca ccgctcgctc ggtggctgcc
      841 tccgggtgcg ggtgcggcga cggtgctcgg ccgagtgccg gctgtcgcgt acgactggac
      901 gctctggccg gcggtcgggc tgctcccggc ctcgatccgg gcggactacg ggctgtcgtg
      961 gggtccccgc gagcggctcg tgactcggtg gctcgtggcc ggctggagcg cgtggcgccc
     1021 cttcgtccct acgggattcc ggcagatgcc gcaggcgctg gcggctgacc ggcgaatcga
     1081 ggcgagcgac ccgaccggcg ggtgatgccc gtcgcggccg acgtcgactg gccggcgcag
     1141 atcagtacag cccggggaac ctcacggcga acagcgtcgc cctcaggtcg accgaggtgg
     1201 cgtcgtcgag cgcgtccagg agaacccggg tcgacgacag cccgccacgg tgcgccgcca
     1261 cgtacccacg cagcgcagcc cagaacgcgg tcgagcccat ccgccgacgt gtcgtgtcga
     1321 gcaggttgcc gccctggatg tagatggtct cgaaatagca ccgctcggag tagtcgtaga
     1381 tcgaccgatc gagccgggcc gtcggacaac ggctggtccg gcgcagcccc atgacgaacc
     1441 gggccacgaa gtccgctgcc gcctcggcac ctcctgcggc gcggtcaact cgatgcacga
     1501 cagcttcacg ccactcggcg ggctcgtgcc cct
//
LOCUS       DATDDI010000266         3940 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_68151, whole genome shotgun sequence.
ACCESSION   DATDDI010000266 DATDDI010000000
VERSION     DATDDI010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68151"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..609
                     /locus_tag="VIU37_03770"
     CDS             <1..609
                     /locus_tag="VIU37_03770"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY6013092.1"
                     /translation="VRDSVVTITSQGLSSRGLLSIPSTGVGSGIVLTSNGYILTNRHV
                     VEGASQSLTVQLADGRQFDARVVKISSDQDLALIKIDATGLTAAKIGDSAKLQVGETA
                     IAIGSPLGTFTESVTRGILSATGRTITVQDESTGQPETLKGLLQTDAAINPGNSGGPL
                     LDASGAVIGINTAVSTQAEGLGFAIPISAASSLIAQATGGVS"
     gene            729..1466
                     /locus_tag="VIU37_03775"
     CDS             729..1466
                     /locus_tag="VIU37_03775"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEY6013093.1"
                     /translation="MGTTVSVAVHAPLVPVEALDRFFDQLRDVDARFSPFREDSEVSR
                     LARGEIREAEASPDLRHVLAACDHLALVTDGAFDARRHRPDGRPDPTGYVKGWAIEEA
                     AWILDSAGARNYWINAGGDIVARGQAAPGRPWQVGIQHPDRPDRVAAVLAVSDRAVAT
                     SGSYERGDHIRDPRGGDATPTGLRSVTVVGPALAFTDGYATALFVMGLDGLPWLASRP
                     DYAALAITTDDRLVWTPGLERYLVRGA"
     gene            complement(1500..2846)
                     /locus_tag="VIU37_03780"
     CDS             complement(1500..2846)
                     /locus_tag="VIU37_03780"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6013094.1"
                     /translation="MPDGIVTPPEATAPELAAEAADGRLIRHVRRNLVLWSGGTTLLV
                     LLALAVALYLAVAGSLESSGISQLDARMSLIRGDRPDPADISRYGFIFGGGGSGTYAL
                     IIGPDGSVVSGARGPQPPGLPYEPGVTAAAATGRDVRTAEISSTPVRILTETVAVDEQ
                     TFTVQVVQDRTAEVRTLSVMLAILLGGGLVVVVVAFGFGAVYARRALVPIRESLANQR
                     TALRRQREFAADASHELRTPLTVIRSSVDYLGRHRSEPVEAVGSALEDIDEEVGHMTS
                     IVEDLLLLARSDSGAVELEHVPVDLGDVAADGAQALGKPATDRGVRVEVDPQPAVVSG
                     DPARLRQLVMILVDNAIRHSPTDGRVGVEVRADGTGASLTVEDDGPGIRPEDLPHLFE
                     RFYRAHGAPGGGTGLGLAIAAWIVERHGGHIEVANRAEGGARFVVRLPGASAIGTG"
     gene            complement(2848..3519)
                     /locus_tag="VIU37_03785"
     CDS             complement(2848..3519)
                     /locus_tag="VIU37_03785"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013095.1"
                     /translation="MHLLVVEDDPRLVRLLRRLLEEDRHIVETATTGHDGLEIAEAAA
                     GIEVVILDIGLPDISGLEVARRIRATGSEVAILMLTARDTIGDRVTGLDAGADDYLVK
                     PFAYEELAARLRALGRRGARVRPEPKLIAGPIVLDETSRRVTLDGRSIDLSPREFSLL
                     ECLLRHPGQTLSRDQLLDQAWPFSVAVTPNAVDAYVHYLREKLGAAGRLIETVRGVGY
                     RLAEG"
     gene            complement(3541..>3940)
                     /locus_tag="VIU37_03790"
     CDS             complement(3541..>3940)
                     /locus_tag="VIU37_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013096.1"
                     /translation="RTTAPAAAATRGNGLFGNGNFARGSFAPGESRAPGTGFLGGLRG
                     EGGFSLSGTVQSVTGDTLTIATANGQTLEFGLGADTTYSTKAPATAADVKTGSNVEVQ
                     LQLGGNAFRPNASAAPSGPVGTASSVTVVP"
BASE COUNT          542 a         1461 c         1408 g          529 t
ORIGIN      
        1 gtccgggact cggtcgtcac gatcacctcg cagggcctgt cgtcgcgcgg cctgctgtcg
       61 atcccgtcga ccggcgtcgg ctcggggatc gtcctgacct ccaacggcta catcctgacc
      121 aatcgacacg tggtcgaggg cgcgagccag tcgctcaccg tccagctggc cgacgggcgc
      181 cagttcgacg ccagggtcgt caagatctcc tccgaccagg acctcgcgct gatcaagatc
      241 gacgccaccg gcctgaccgc cgcgaagatc ggcgactcgg ccaagctcca ggtcggtgag
      301 accgcgatcg cgatcggcag cccgctcgga acgttcaccg agtcggtgac ccgcgggatc
      361 ctctcggcga cgggacggac gatcaccgtc caggacgagt cgaccggcca gcccgagaca
      421 ctgaagggcc tcctccagac ggacgcggcc atcaatccgg gcaacagcgg cggcccgctc
      481 ctcgacgcgt ccggggcggt catcggcatc aacacggcgg tgtccacgca ggccgagggc
      541 ctcgggttcg cgatcccgat cagcgccgcc tcgtcgctca tcgcccaggc cacaggcggg
      601 gtcagctgaa cctctcgcac cgggacccgg ccgccatcgg ggccgggtcc cgcgtcacgg
      661 ggggccctcg ggtgccgacc accgacgcgc cgcagccgga cgatcacgtc cgccgagtcg
      721 agtccgtcat gggcacgacc gtcagcgtcg cggtccatgc gccgctcgtg ccagtcgagg
      781 cgctggatcg gttcttcgac cagctgcgcg acgtcgacgc gcggttcagc cccttccgcg
      841 aggacagcga ggtcagccgg ctcgcccgcg gcgagatccg cgaggcggag gccagtcccg
      901 atcttcgcca cgtcctggcc gcatgcgatc acctggcgct cgtcaccgac ggcgccttcg
      961 acgcccgccg gcaccgcccg gacgggcgcc ccgacccgac cggctacgtc aagggctggg
     1021 cgatcgagga agcggcctgg atcctcgaca gcgccggcgc gcgcaactac tggatcaacg
     1081 ccggcggcga catcgtcgcc cggggccagg ctgccccggg ccggccctgg caggtgggga
     1141 tccagcatcc ggaccggccg gaccgggtgg cagcggtgct ggcagtctcc gaccgggcgg
     1201 tcgcgacgtc cggcagctac gagcggggcg accacatccg cgacccacgc ggcggggacg
     1261 ccactccgac cggcctgcga agcgtgaccg tggtcgggcc ggcgctggcg ttcactgatg
     1321 gctatgccac ggcgctcttc gtcatgggcc tcgacgggct gccttggctg gcgtcgcgcc
     1381 cggactacgc ggccttggcg atcacgacgg acgatcggtt ggtctggacg ccgggcctgg
     1441 agcgctacct ggtccgcggc gcctgaccgc ggcatcgggg cccggctctt tcgcctgtcc
     1501 tatcccgttc cgatcgcgga ggcgcccggc agccggacca cgaaccgggc accgccctcg
     1561 gcgcgattgg cgacctcgat gtggccgccg tgccgctcca cgatccaggc cgcgatcgcc
     1621 agcccgagcc cggtgccccc gcccggagcg ccgtgtgccc ggtagaagcg ttcgaacagg
     1681 tgcggcaggt cctcgggccg gatgccgggc ccgtcgtcct cgaccgtgag cgaggcgccc
     1741 gtcccgtcgg cgcggacttc cacgcccacg cgcccgtccg tcgggctgtg ccggatcgcg
     1801 ttgtcgacga ggatcatcac cagctggcga agcctggccg ggtcaccgga cacgaccgcc
     1861 ggctgcggat cgacctccac ccggacgccc cggtccgtgg ccggcttgcc gagcgcctgg
     1921 gcgccgtcgg ccgcaacgtc gccgaggtcg accggcacgt gctcgagctc gaccgccccc
     1981 gaatccgaac gggcgagcag cagcaggtcc tcgacgatcg aggtcatgtg cccgacctcc
     2041 tcgtcgatgt cctcgagcgc cgatccgacc gcctcgaccg gctcgctgcg gtggcggccg
     2101 agatagtcga cgctgctgcg gatcacggtc agcggcgtcc gcagctcgtg gctggcgtcc
     2161 gccgcgaact cacgctggcg ccgcaacgcc gtgcgctgat tggccagcga ctcgcggatg
     2221 ggaacgaggg cgcgccgggc gtagacggca ccgaacccga aggccacgac gacgacgacg
     2281 agcccgccac cgaggaggat cgccagcatc accgacaggg ttcgcacctc ggcggtccgg
     2341 tcctggacga cctggaccgt gaaggtctgc tcgtcgaccg cgacggtctc ggtcaggatc
     2401 cggacgggcg tgctggagat ctccgcggtc cgaacgtcgc gccccgtcgc ggccgcggcg
     2461 gtcacgcccg gctcgtaggg caggcccgga ggctgcggtc cacgcgcccc gctgaccacg
     2521 ctgccgtcag gtccgatgat cagggcatac gtccccgatc cgccgccccc gaagatgaac
     2581 ccgtagcgcg agatgtcggc gggatcgggc cgatcgccgc ggatgaggct catccgggcg
     2641 tcgagctggc tgatccccga gctctcgagc gaccccgcca ccgcgaggta cagggcgacc
     2701 gccagcgcga gcaggacgag cagcgtcgtc ccgccgctcc acagcacgag attgcgccga
     2761 acgtgtcgga tcagccgtcc gtcggcggcc tcggcggcga gctccggcgc ggtcgcctcg
     2821 ggcggggtga cgatcccgtc gggcacctca gccttccgcc aggcgatagc ccacgccgcg
     2881 gacagtctcg atcaggcggc cggccgcacc gagcttctcg cggaggtaat ggacgtaggc
     2941 gtccacggcg ttcggcgtca ccgccacgct gaacggccag gcctggtcga ggagctggtc
     3001 gcgtgacagc gtctgccccg ggtgacggag caggcattcg agcagcgaga actcgcgtgg
     3061 actcaggtcg atcgagcgac cgtcgagggt gacccggcgc gacgtctcgt cgaggacgat
     3121 cggcccggcg atgagcttgg gctcgggccg gaccctcgca ccgcgccgcc cgagcgcgcg
     3181 gagcctcgcc gcgagctcct cgtaggcgaa cggcttgacc aggtagtcgt cggcgcccgc
     3241 gtccaagccg gtcacgcggt caccgatcgt gtcgcgggcg gtcagcatca ggatggccac
     3301 ctcggacccg gtggcgcgga tccggcgggc gacctccagc ccggagatgt cgggcaggcc
     3361 gatgtcgagg atgacgacct cgatgccggc cgcggcctcg gcgatctcga ggccgtcgtg
     3421 ccccgtcgtg gcggtctcca cgatatggcg gtcctcctcg agcagccggc gcagtagtcg
     3481 gaccaggcgt gggtcgtcct cgaccacgag caggtgcatg gccgtcagcc tacgccttcc
     3541 ctacgggacg accgtgacgc tgctggcggt gccgaccggg ccggatggcg ccgcgctggc
     3601 gttcgggcgg aaggcgttgc cgccgagctg cagctggacc tcgacgttcg agccggtctt
     3661 gacatcggcg gcggtcgccg gcgccttggt gctgtaggtc gtgtcggcgc ccaggccgaa
     3721 ctcgagtgtc tgcccgttag cggtggcgat cgtcagcgtg tccccggtca cggactggac
     3781 cgtccccgac aggctgaacc cgccctcgcc gcgcaggccg ccgaggaagc cggtccccgg
     3841 cgcccgcgac tcgcccggcg cgaagctgcc gcgggcgaag ttgccgttcc cgaacaaccc
     3901 gttgccgcgc gtcgcggcgg cggccggtgc cgtggtgcgc
//
LOCUS       DATDDI010000267         2682 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_5756, whole genome shotgun sequence.
ACCESSION   DATDDI010000267 DATDDI010000000
VERSION     DATDDI010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5756"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1020
                     /locus_tag="VIU37_03795"
     CDS             151..1020
                     /locus_tag="VIU37_03795"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HEY6013097.1"
                     /translation="MDLGGFSSGALTGLREGVEAALIISIICAYLARTGHRSQFARVF
                     VGAGAAAGLSAALGVGLYVTVGSFQEPYEQLFEATTLLLAAGVVTWMLFWMRRQAASV
                     RGELQAAVDRAIREGSVTAMAVLAFVAVLREGIETSLFLVGQAASADQGAPSVVVGAI
                     VGLGAAILLGVGFYHGSRRVNLGTFFRWTGIGLVFIAGGLVAKAAHELIEISVVTVGN
                     QTLFDLRGVLPDEPAAGNVLGQFLHVVFGYTATPEVTTFVAWLAYIAIVLALFLRPVR
                     RFPTASAPAAVQS"
     gene            complement(1036..2010)
                     /locus_tag="VIU37_03800"
     CDS             complement(1036..2010)
                     /locus_tag="VIU37_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013098.1"
                     /translation="MIPALIVSATSAPAAVGLGVLLTGFFLGIRHGIDWDHIAAITDI
                     TSTTAAAGLAEAAHEGQHRAAPGHSHHHGGTLELRAHDSGPGAATLAPELAVRPAMER
                     TRFMTEQAQAIRLGTLYALGHGLVVVVLGLLALAFGALLPEWLDPIMGRIVGVTLVAL
                     GLWVMYSIYRYARAGEAFRLRSRWMLVFDGIRYGWRRFQARLHGHEHVEPLEMSSYGP
                     RTAFGVGMIHGIGAETGSQVLLIAAVGGASSAGLGVPMLAAFVVGLLVSNFAIVVVSS
                     VGFVASQTRERVYVAFGAVAGVFSLVVGAVFLLGLSGGLPDLGNALPF"
     gene            2150..2581
                     /locus_tag="VIU37_03805"
     CDS             2150..2581
                     /locus_tag="VIU37_03805"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEY6013099.1"
                     /translation="MDWSEIRAQLRASGLRWTPQRRTLIEVLSRTNGHVTGAELIERC
                     RAVDPTTIPSTVYRTLDVLEGLGLVRHSHGANGREEFHVLPSGVHGHLHCTGCGSTWE
                     IPADEAAEVVESLRASRRFAVDVTHLSISGQCAGCSEKATH"
BASE COUNT          378 a          959 c          938 g          407 t
ORIGIN      
        1 cgagcgtctg gtacggcccc ccgatccagc cctgacggag cgcttgaccc ctgaccggac
       61 cctcggtaca gtgcccgtga caagctgcct tgcattgacg cctcatgcgc ccttgcgaga
      121 tcgtcccgac accttggaga ccgcgttcgg atggacctcg gaggcttctc gagcggcgcg
      181 ctgaccggcc tgcgtgaagg cgtcgaggcc gcgctgatca tcagcatcat ctgcgcctac
      241 ctcgcccgga ccggtcatcg gagccagttc gcgcgggtgt tcgtgggagc cggcgcggcc
      301 gccggcctga gcgccgccct cggcgtcggg ttgtacgtga cggtcgggag cttccaggaa
      361 ccgtacgagc agctgttcga ggcgacgacg ctgctgctcg ccgccggggt ggtcacctgg
      421 atgctgttct ggatgcgccg tcaggcggcc agcgtcaggg gtgagctcca ggccgcggtc
      481 gatcgggcga tccgggaggg ctcggtcacg gcgatggccg tcctcgcctt cgtcgccgtc
      541 ctgcgcgagg ggatcgagac gtcgctcttc ctcgtcggcc aggcggcgtc ggccgaccag
      601 ggggcgccct cggtcgtcgt cggcgcgatc gtcgggctcg gcgcggcgat cctgctcggg
      661 gtcggcttct accacggctc acggcgggtc aacctcggca cgttcttccg ctggaccggg
      721 atcgggctgg tgttcatcgc cggcggcctg gtggccaagg cggcccacga gctgatcgag
      781 atctcggtcg tcaccgtcgg caaccagacc ctgttcgacc ttcggggcgt ccttccagac
      841 gagcccgctg ccgggaacgt cctcggccag ttcctgcacg tcgtgttcgg ctacacggcg
      901 actccggagg tcacgacatt cgtggcctgg ctcgcctaca tcgcgatcgt gctggcgctc
      961 ttccttcgtc cggtccgtcg cttcccgacc gcgagcgccc cggccgccgt ccagtcctga
     1021 cggcgatccg gcgccctaga acgggagggc gttgcccagg tctggcagcc cgccgctcaa
     1081 cccgagcagg aagaccgccc cgaccacgag gctgaacacg ccggccacgg ccccgaacgc
     1141 cacgtagact cgctctcgcg tctggctcgc cacgaagccg accgagctga cgacgacgat
     1201 cgcgaagttg gacacgagca ggccgaccac gaacgccgcc agcatcggca cgccgaggcc
     1261 ggcgctggag gcgccgccga ccgcggcgat cagcaggacc tggctgccgg tctcggcacc
     1321 gatcccgtgg atcatgccga caccgaacgc cgtgcgcggc ccgtacgagc tcatctccag
     1381 cggttcgacg tgctcgtggc cgtggagcct ggcctggaac cgccgccagc cgtagcggat
     1441 gccgtcgaac acgagcatcc agcggctgcg cagccggaac gcctcgccgg cgcgcgcgta
     1501 gcgatagatc gagtacatca cccacaggcc gagggcgacg agcgtgacgc cgacgatccg
     1561 gcccatgatc ggatccagcc actcgggcag gagggcgccg aacgcgaggg ccagcaggcc
     1621 gaggacgacg accaccaggc cgtgtcccag cgcgtagagc gtccccagcc ggatcgcctg
     1681 ggcctgctcg gtcatgaacc gcgtccgttc catcgccggc cggaccgcca gctccggggc
     1741 gagcgtcgcc gcaccggggc ccgaatcgtg cgcgcgcagc tcgagtgtgc cgccgtggtg
     1801 gtggctgtga cccggcgccg cccggtgctg gccttcatgg gccgcctcgg cgagaccggc
     1861 cgccgcagtg gtactggtga tgtcggtgat cgcggcgatg tggtcccagt cgatcccgtg
     1921 ccggatcccc aggaagaagc ccgtcaacag gacgccgagg ccgaccgccg ccggggcact
     1981 ggtcgcggag acgatgaggg ctgggatcat ggacgggacc tcgctgggag cgtcccagcc
     2041 tagcggaggt tgcctgatgt tgcaacgtct cgcatctgct tcgtgatgcg ttcgtcgacg
     2101 tatacttcgc gcgatgggct cttccggttc atacgtcccg acgcgccccg tggactggtc
     2161 cgagattcgt gcccagctgc gggcgagcgg gctgcgctgg accccgcagc ggcgcaccct
     2221 gatcgaggtg ctgtcgcgca cgaacgggca cgtcaccggc gccgagctca tcgagcgctg
     2281 ccgggcggtc gatcccacca cgatcccgtc caccgtctac cgcacgctcg acgtgctcga
     2341 ggggctgggc ctggtccggc acagccacgg cgccaacggc cgcgaggagt tccacgtcct
     2401 gccgagcggc gtccatggcc acctccactg caccggctgc gggtcgacct gggagatccc
     2461 ggccgacgag gctgcagagg tcgtggagtc gctgcgcgcc agccgccggt tcgccgtcga
     2521 cgtgacgcat ctgtcgatct ccggtcagtg cgcggggtgc tcggagaagg cgacccactg
     2581 aggggcccgg aatcgaagcc gccctactcg gccggcttct cgagacggcg ggcaagctcg
     2641 tggaagtcat cgatcacgat gtccgcctcg accggcgcgt cg
//
LOCUS       DATDDI010000268         1960 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_463327, whole genome shotgun sequence.
ACCESSION   DATDDI010000268 DATDDI010000000
VERSION     DATDDI010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463327"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1960
                     /locus_tag="VIU37_03810"
     CDS             <1..>1960
                     /locus_tag="VIU37_03810"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEY6013100.1"
                     /translation="VLESLGVNLDKVRHEVIRVLSQSSSAGPAQETKRASKTPTVDAL
                     GINLTEAARADKLDPVIGREKEIERVIQILGRKTKNNPALIGEPGVGKTAIAEGLAHR
                     IVAGDVPESLLNKRVLTLDIGSLVAGTKYRGEFEERLKKIIEELRNTNDAVLFIDELH
                     TLVGAGAAEGAIDAANILKPPLSRGELQCIGATTLDEYRKYIERDAALERRFQPVMVE
                     EPTLEQTIEILMGIRERYEQHHKVKITDEAVKAAADLSTRYITDRHLPDKAIDLIDEA
                     ASRVRLRHSSAPPALRAAQKDLERISKEKDAAINNQEYEEAATLREAEATARESADAL
                     RAEWQSQISGDQPTVDEEEIAQVVAMWTGIPVTRIAQEESQRLLHMEEALHNRVIGQD
                     EAIGIVSKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEFMFGSEDALIKI
                     DMSEFMERHNVSRLVGAPPGYVGFDEGGQLTEAVRRKSYAVVLLDEVEKAHPEVFNIL
                     LQILEDGHLSDAKGRRVDFRNCIIIMTSNLGAKQLQTNATLGFRAMGDTDIARAETSY
                     EIMKEKVAAELKNNFRPEFLNRIDATVVFRSLTVEEITQIVDLMLARVRDQLRAQQMS
                     LEVTQAASSARPSGAEGGSCARAASTLAP"
BASE COUNT          360 a          675 c          661 g          264 t
ORIGIN      
        1 cgtgctcgag tcgctcggcg tgaacctgga caaggtccgc cacgaggtca tccgggtcct
       61 ctcgcagtcg tcgtcggctg gcccggcgca ggagaccaag cgcgccagca agacgcccac
      121 cgtggacgcc ctggggatca acctcacgga ggccgcccgc gcggacaagc tcgatccggt
      181 catcggccgg gagaaggaga tcgagcgggt catccagatc ctgggccgca agacgaagaa
      241 caatccggcc ctgatcggcg agcccggggt cggcaagacg gcgatcgccg aggggctggc
      301 ccaccggatc gtggccgggg acgtccccga gtcgctcctc aacaagcggg tgctgaccct
      361 cgatatcggg tcgctcgtgg ccgggacgaa gtaccgcggt gagttcgagg agcgcctcaa
      421 gaagatcatc gaggagctgc gcaacaccaa cgacgcggtc ctgttcatcg acgagctcca
      481 cacgctcgtc ggggcgggcg ccgccgaggg cgcgatcgac gcggccaaca tcctcaagcc
      541 gccgctgtcg cgcggcgagc tccagtgcat cggcgccacg acgctcgacg agtaccgcaa
      601 gtacatcgaa cgcgatgcgg cgctcgagcg gcgcttccag ccggtcatgg tcgaggagcc
      661 gacgctcgag cagacgatcg agatcctcat gggcatccgc gagcggtacg agcagcacca
      721 caaggtcaag atcaccgacg aggccgtgaa ggccgccgcg gacctgtcca cccggtacat
      781 caccgaccgc cacctccccg acaaggcgat cgacctgatc gacgaggcgg cgtcgcgcgt
      841 gcgcttgcgc cactcgtccg ccccgcccgc gctgcgcgcg gcccagaagg atctcgagcg
      901 catctccaag gaaaaggacg ccgcgatcaa caaccaggag tacgaggagg ccgccaccct
      961 ccgcgaggcc gaggcgacgg cgcgcgaatc ggccgacgcc ctgcgggcgg agtggcagtc
     1021 gcagatctcc ggcgaccagc cgacggtcga cgaggaggag atcgcccagg tcgtggcgat
     1081 gtggacgggc atcccggtca ccaggatcgc ccaggaggag tcccagcgcc tcctgcacat
     1141 ggaggaagcg ctccacaacc gcgtcatcgg gcaggacgag gccatcggca tcgtgtcgaa
     1201 ggcggtccgc cgtgcgcgag cgggcctcaa ggatcccaag cggccgatcg gctcgttcat
     1261 cttcctcggc ccgacgggcg tcggaaagac cgagctcgcc cgggcgctcg ccgaattcat
     1321 gttcggcagc gaggacgcgc tgatcaagat cgacatgagc gagttcatgg agcggcacaa
     1381 cgtgagccgg ctcgtggggg cgcctcccgg ctacgtcggc ttcgacgagg gtggccagct
     1441 gaccgaggcg gtccgccgca agagctacgc ggtcgtgctg ctcgacgagg tcgagaaggc
     1501 ccacccggag gtcttcaaca tcctgctcca gatcctcgag gacgggcacc tgtccgacgc
     1561 caagggtcgc cgggtcgact tccgcaactg catcatcatc atgacctcga acctcggcgc
     1621 gaagcagctc cagacgaacg ccacgctcgg cttccgggcg atgggcgaca ctgacattgc
     1681 ccgcgccgag acctcctacg agatcatgaa ggagaaggtc gcggccgagc tgaagaacaa
     1741 cttccggccg gagttcctca accgcatcga cgcgacggtt gtgttccgct cgctgacggt
     1801 cgaggagatc acccagatcg tcgacctgat gctggcccgg gtccgcgacc agctgcgtgc
     1861 ccagcagatg tccctcgagg tcacccaggc ggcatcttcc gctcgtcctt ctggcgcgga
     1921 gggcggctcc tgcgctcggg cggcttcgac tcttgcgccg
//
LOCUS       DATDDI010000269         1842 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_630093, whole genome shotgun sequence.
ACCESSION   DATDDI010000269 DATDDI010000000
VERSION     DATDDI010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630093"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1842
                     /locus_tag="VIU37_03815"
     CDS             <1..>1842
                     /locus_tag="VIU37_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009567342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HEY6013101.1"
                     /translation="PEGYKDDIQLVITVLSTDQENLPDVLGTVAASAALTISEIPFAG
                     PVGAVRIGRIGGEFVVNPTYSQLEESELDLIVSGTRDAIMMVEAGAKLLPEAVMAEAI
                     LFGHRALQPLVELQEELRKAAGKPKSTPFIETGTSSVLAFTDAVDAGDELVVLDVETT
                     GTDPKMADLVEIAAVKVKGGKITDRWSTLVNPGRPIVGNQMHGIKDADVKKAPSPAEA
                     ARQALKFIGSSVVVGHSVGFDLGFLEAALADGTHFESGTYLDTLTIAREGYPDLENYK
                     LPTLSAFFGIELAQAHRAGPDAEATANLLIWFGKDLPGRIAALREGIADSIRATRTGG
                     DSKAIQEAARREARVSKALFNLVHKKTARKLALDEGIRMDGRGLTELRQISVDVGILP
                     RAHGSGLFTRGETQVLTIATLGASSDVQRIDTISPQTEKRYIHHYNFPPYSTGENKPM
                     RGPSRRDIGHGHLAERALLPVLPTQEEFPYVIRLVSECMSSNGSTSMASTCGSTLALM
                     DAGVPISAPVAGAAMGLISEPGGRFAVLTDILGKEDSVGDMDFKVTGTRDGITALQMD
                     IKVQGINEAIIRGGLQQALAARLEILDKMTQVMPEARVEMSDFAPRII"
BASE COUNT          310 a          675 c          601 g          256 t
ORIGIN      
        1 cccgagggct acaaggacga catccagctc gtcatcaccg tcctctcgac cgaccaggag
       61 aacctgcccg acgtgctcgg caccgtggcc gcctcggccg cgctgacgat cagcgagatc
      121 ccgttcgcgg gtcccgtcgg cgccgttcgc atcggccgca tcggcggcga gttcgtggtc
      181 aatccgacct acagccagct cgaggagtcg gagctcgacc tcatcgtctc cggcacgcgc
      241 gacgcgatca tgatggtcga ggccggcgcc aagctcctgc cggaggccgt catggccgag
      301 gccatcctgt tcggccatcg ggccctgcag ccgctcgtcg agctccagga ggagctccgc
      361 aaggcggccg gcaagcccaa gagcacgccg ttcatcgaga ccggcaccag ctcggtcctc
      421 gccttcacgg acgccgtgga cgccggggac gagctcgtcg tcctcgacgt cgagaccacc
      481 ggcacggacc cgaagatggc cgatctcgtc gagatcgccg cggtcaaggt caagggcggc
      541 aagatcaccg accgctggtc gaccctggtc aacccgggcc gcccgatcgt cgggaaccag
      601 atgcacggca tcaaggacgc cgacgtgaag aaggcgccga gcccggccga ggccgcccgc
      661 caggcgctca agttcatcgg cagctccgtg gtcgtcgggc attcggtcgg gttcgacctc
      721 ggattcctcg aggcggcgct cgccgacggc acgcacttcg aatccggcac ctacctcgac
      781 acgctgacga tcgcccgcga gggctatccc gatctcgaga actacaagct gccgacgctg
      841 tcggcgttct tcgggatcga gctcgcccag gcacatcgtg ccggccccga cgccgaggcg
      901 accgccaacc tgctcatctg gtttggcaag gacctgcccg ggcgcatcgc ggcgctccgc
      961 gaggggatcg cggactcgat ccgcgccacc cgcaccggcg gcgacagcaa ggcgatccag
     1021 gaggccgctc ggcgcgaggc gcgcgtcagc aaggccctgt tcaacctcgt ccacaagaag
     1081 accgcccgca agctcgccct cgacgagggc atccgcatgg acggccgggg cctgaccgag
     1141 ctccgccaga tctcggtcga cgtcggcatc ctgccgcgcg cccacggctc gggcctgttc
     1201 acccgtggtg agacccaggt cctgacgatc gcgacgctcg gcgcgtcctc ggacgtgcag
     1261 cggatcgaca cgatcagccc gcagaccgag aagcgctaca tccaccacta caacttcccg
     1321 ccgtactcga ccggcgagaa caagccgatg cgtggcccca gccgccgcga catcgggcac
     1381 ggccacctgg ccgagcgcgc gctcctgccg gtgctgccga cgcaggaaga gttcccgtac
     1441 gtcatccggc tcgtgtcgga gtgcatgtcg tccaacggct cgacgtcgat ggcctcgacc
     1501 tgcggctcga cacttgccct catggacgcg ggcgtgccga tctcggcgcc ggtcgccggc
     1561 gcggcgatgg gcctgatcag cgagccgggc ggccggttcg cggttctgac cgacatcctc
     1621 ggcaaggagg attcggtcgg cgacatggac ttcaaggtga ccggcacgcg cgacggcatc
     1681 accgccctgc agatggacat caaggtccag ggcatcaacg aggcgatcat ccggggcggg
     1741 ctccagcagg cccttgcggc ccggctcgag atcctcgaca agatgaccca ggtcatgccc
     1801 gaggcccgcg tcgagatgag cgacttcgcg ccgcgcatca ta
//
LOCUS       DATDDI010000270         2124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_68272, whole genome shotgun sequence.
ACCESSION   DATDDI010000270 DATDDI010000000
VERSION     DATDDI010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68272"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VIU37_03820"
     CDS             <1..318
                     /locus_tag="VIU37_03820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013102.1"
                     /translation="GRDLVSHGTGWVERIVVDADDISTYFTPLAITLNIDSFEHLEFE
                     TRPDQLLVYTLVQGDERVVVEFAPIGPSGEDRSPFAPRQLEFDTSDYVQMELLGLEVH
                     EDE"
     gene            464..1822
                     /locus_tag="VIU37_03825"
     CDS             464..1822
                     /locus_tag="VIU37_03825"
                     /inference="COORDINATES: protein motif:HMM:NF013056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEY6013103.1"
                     /translation="MSAARSGMSSDGLASYFKFAERGTDLVTEARAGLTTFMVMAYII
                     FLNPAILSAAGIDVPAAAAATALVAGVMTIAMGIVGNYPLAMAAGLGINGVVAFTLVL
                     GKGLTLPGAMGVIVLEGIVVTVLVLAGLREAIMNAVPLALKRSIGVGIGLFILFIGFV
                     NGGFIVTPEGGGTPVTVVFPTTTANFVFLLGLAVTIALYVMKIRAALIISIIVTTIIA
                     LLTGVQTVPSDLVATPSFGTIGQFDVANVFSKLGLLTALLTIFAIMLTDFFDTMGTVT
                     GVAAEAGLSRPDGSVPGICRVLLVDSVAAIAGGAAGISSNTTYIESAAGVAEGGRTGF
                     ASVITGILFLLAIFLSPIAGVIPSVATAPVLVLVGYLMFTLVKDIPVADPEDGIPALL
                     TMVLMPLTYDITVGIGAGFISWVLIKVVRGKFGEIHPLMWVVSIAFLVYFAKDWIQAV
                     IG"
     gene            1898..>2124
                     /locus_tag="VIU37_03830"
     CDS             1898..>2124
                     /locus_tag="VIU37_03830"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY6013104.1"
                     /translation="MFERTALPAGPRVISARLPAARSVSIAAYVLAGSRLEEAGQVGV
                     AHFMEHLTFKGTAAYPTTRAISEAIEGAGGS"
BASE COUNT          306 a          737 c          705 g          376 t
ORIGIN      
        1 ggtcgggacc tggtcagcca tggcaccggc tgggtcgagc ggatcgtggt cgatgccgac
       61 gacatctcga cctacttcac gcccctggcg atcaccctca acatcgactc cttcgagcat
      121 ctcgaattcg agacccgtcc cgatcagctc ctcgtctaca cgctcgtcca gggcgacgag
      181 cgggtcgtcg tcgagttcgc cccgatcggc ccgtcaggcg aggaccgctc gccgttcgct
      241 ccgcgacagc tggaattcga caccagcgac tatgtccaga tggagctgct cggcctcgaa
      301 gtccacgagg acgagtagcg gatcgggagg tcggtccgtc ctggccggcc gttgagggcg
      361 cgacgatcgc cgagggagcg atcgtcgttt ggtaggtggc gcggtccgag tccgcccgag
      421 ggattccggc gcgccgcgtg agggcaagga ggcagggagt ccggtgtcag cagcacggtc
      481 gggcatgtcg agcgacggcc tggcgtccta cttcaagttc gccgaacgcg ggaccgacct
      541 ggtcaccgag gcgcgagccg gcctgaccac gttcatggtc atggcctaca tcatcttcct
      601 caatccggcg atcctgtcgg cggccggcat cgacgtgccg gcggcagcag ccgcgacggc
      661 cctggtggcc ggcgtgatga cgatcgccat ggggatcgtg ggcaactacc cgctggcgat
      721 ggccgccggc ctcggcatca acggcgtggt cgcgttcacg ctcgtcctcg gcaagggcct
      781 gacgctgcct ggcgcgatgg gcgtgatcgt cctcgaaggc atcgtcgtga cggtcctcgt
      841 cctggccggc ctgcgcgaag cgatcatgaa cgcggtgccg ctcgcgctca agcgctcgat
      901 cggcgtcggc atcgggctgt tcatcctgtt catcgggttc gtcaacggcg ggttcatcgt
      961 cacgcccgag ggcggcggca cacccgtcac cgtcgtgttc ccgacgacga cggccaactt
     1021 cgtgttcctg ctcggcctcg cggtcacgat cgcgctgtac gtgatgaaga tccgcgccgc
     1081 gctcatcatc agcatcatcg tcaccacgat catcgccctg ctgaccggcg tgcagacggt
     1141 cccgagcgat ctcgtcgcga cgccgagttt cggcacgatc ggccagttcg acgtagccaa
     1201 cgtgttcagc aagctcggcc tgctgacggc gctgctcacg atcttcgcga tcatgctcac
     1261 ggacttcttc gacacgatgg gaacggtcac cggcgtcgcc gccgaagccg gcctgtcgcg
     1321 accggacggc tcggtcccgg gcatctgtcg cgtcctgctg gtcgacagcg tcgccgcgat
     1381 cgccggcggg gccgccggga tcagctcgaa cacgacctac atcgagagcg ccgcgggcgt
     1441 ggccgagggt ggccggaccg ggttcgcctc ggtcatcacc ggcatcctct tcctccttgc
     1501 gatcttcctg tcgccgatcg caggcgtcat cccgtccgtc gccacggcgc cggtcctcgt
     1561 gctcgtcggc tatctcatgt tcacgctcgt caaggacatc ccggtggcgg atccggagga
     1621 cggaatcccg gccctcctca ccatggtcct catgccgctg acgtacgaca tcaccgtagg
     1681 gatcggggcc ggcttcatca gctgggtgct gatcaaggtg gtccgcggca agttcggcga
     1741 gatccacccg ctgatgtggg tggtgtcgat cgccttcctg gtctacttcg ccaaggactg
     1801 gatccaggcc gtcatcggct gacggtcgcg gttcaccgat ctcgggcgcc ccggccaccg
     1861 gccggggcgc ccgatcgatt cctgtaccat cggccggatg ttcgaacgga ccgcgctgcc
     1921 agccggacct cgcgtgatca gcgcccggct cccggcggca cgctcggtct cgatcgccgc
     1981 gtacgtcctg gccggctccc ggctcgagga ggcgggccag gtcggcgtcg cccatttcat
     2041 ggagcacctg accttcaagg gcacggccgc gtacccgacg acacgcgcga tcagcgaggc
     2101 gatcgagggc gccggcggct cgtt
//
LOCUS       DATDDI010000271         1524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_567487, whole genome shotgun sequence.
ACCESSION   DATDDI010000271 DATDDI010000000
VERSION     DATDDI010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567487"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..361)
                     /locus_tag="VIU37_03835"
     CDS             complement(<1..361)
                     /locus_tag="VIU37_03835"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY6013105.1"
                     /translation="MSNPPTRRRISSGGPFEAVAGYSRAIAVGDGCWVAGTTDAGPDG
                     RSLHPGDLSGQTRAALAIIESALAEAGFSLADVVRTRMFLTDISRAGEVTAIHGEVFG
                     AVRPAATLVEVSGLIEPS"
     gene            complement(358..>1524)
                     /locus_tag="VIU37_03840"
     CDS             complement(358..>1524)
                     /locus_tag="VIU37_03840"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HEY6013106.1"
                     /translation="LPGYLADLERLVNTDCGSYTPAGVNEIGRWVAAFLADLGATIET
                     RPDPAGRLGDTVIATFEGVPGAPRVLLIGHLDTVFDPGTAAARPFRIEDGIAYGPGVT
                     DMKSGLLAGLYALKALVADHAGRGGLPFERLVFVANPDEEIGSPTSTPHIRALAPGMD
                     VTLVLECARANGDIVSARKGILDLRIAVNGRAAHAGVEPEKGRSAILEAARIVRELHA
                     LNGRWPGVTVNVGVIGGGTRPNVVAERCSLEVDVRGTSRASLEAAEAEIRRIAESTEV
                     PDTSIEFEEMARWWPMEKLARSGRLVAHAQAIAASLGFSVADASTGGASDANTTSGMG
                     VPSLDGLGPIGGSDHSPAEYLVVDSIVPRTTLLAGLLLAVAADPEVLAWRERPS"
BASE COUNT          214 a          554 c          557 g          199 t
ORIGIN      
        1 ggctgggttc gatcagcccg ctgacctcga ccagggtggc cgccgggcgg acggccccaa
       61 acacctcgcc gtggatcgcg gtcacctcgc cggcccgcga gatgtcggtc aggaacatcc
      121 gggtgcggac cacgtccgcg aggctgaagc ccgcttcggc gagggccgat tcgatgatcg
      181 cgagagccgc gcgagtctgg ccggagaggt cgcccgggtg gagcgaccgg ccgtcggggc
      241 cggcgtcggt ggtcccggcg acccagcaac cgtcgcccac cgcgatcgcc cggctgtagc
      301 cggcaaccgc ctcgaacggc ccgccggacg agatccgccg gcgcgtcggc gggttgctca
      361 cgacgggcgc tcacgccagg ccagcacctc cgggtccgcg gcgacggcca ggagcaggcc
      421 ggccagcagc gtcgtccgcg gcacgatcga atcgaccacg agatactcgg ccggcgagtg
      481 atcgctgcca ccgatcgggc cgaggccgtc gaggctcggg acgcccatgc ccgaggtcgt
      541 gttcgcgtcg gacgccccac cggtcgacgc gtcggcaacc gagaaaccga gcgacgcggc
      601 gatggcctgg gcgtgggcga cgaggcggcc gctcctggcc agcttctcca tcggccacca
      661 gcgcgccatc tcctcgaact cgatcgacgt gtccggaacc tccgtcgact cggcgatgcg
      721 ccggatctcc gcctcggcgg cctcgagtga cgcccggctg gtcccgcgga cgtcgacctc
      781 gagcgaacag cgctcggcaa cgacgttcgg acgggttccg ccgccgatga cgccgacgtt
      841 gaccgtgacg cccggccagc ggccgttgag ggcgtggagc tcgcgcacga tccgcgccgc
      901 ctcgaggatc gcactgcgcc ccttctcggg ctcgacgccc gcgtgcgcgg cgcgcccatt
      961 gacagcgatc cggagatcga ggatcccctt gcgcgccgag acgatgtcgc cgttcgcgcg
     1021 ggcgcattcg aggacgagcg tgacgtccat gccgggcgcc agtgcgcgga tgtgcggcgt
     1081 cgatgtcggc gagccgatct cctcgtccgg gttggcgacg aagacgagcc gctcgaaggg
     1141 aagaccgccc cggccggcat gatccgcgac cagggccttg agcgcgtaca gccctgccag
     1201 caggcccgac ttcatgtcgg tgacgcccgg gccgtaggcg atcccgtcct cgatccggaa
     1261 cggccgggcg gccgcggtgc ccgggtcgaa caccgtgtcg aggtggccga tgagcaggac
     1321 gcgcggcgct ccgggcacgc cttcgaacgt ggcgatgacg gtgtcgccga gtcgccccgc
     1381 cggatccggc cgcgtctcga tcgtggcgcc aaggtcggcc aggaaggctg ccacccagcg
     1441 tccgatctcg ttcacccccg cgggcgtgta gctgccgcag tccgtgttga ccaggcgttc
     1501 gaggtcggcc aggtagccgg ggag
//
LOCUS       DATDDI010000272         1814 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_442701, whole genome shotgun sequence.
ACCESSION   DATDDI010000272 DATDDI010000000
VERSION     DATDDI010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442701"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VIU37_03845"
     CDS             <1..458
                     /locus_tag="VIU37_03845"
                     /inference="COORDINATES: protein motif:HMM:NF028456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013107.1"
                     /translation="EVRWAGEYLEDAEIVVVAYGTAARVARTAVERAREHGLPAGIFR
                     PITLWPFPSAELRTIAPRLRAVVVLEMSAGQMVEDVRLSVDGRAPVFFHGRTGGMVPT
                     PGEVVDELRRAWATTTPVEDPARVDAAAAEPDPLSLIEQGAWAATGIGR"
     gene            463..1254
                     /locus_tag="VIU37_03850"
     CDS             463..1254
                     /locus_tag="VIU37_03850"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6013108.1"
                     /translation="MSTLTSESKRIVYRRPDALADRSTHYCPGCGHGIVHRLVAELLD
                     ELDVTKRTIGVASVGCSVFAYDYFTVDFVESPHGRAPAVATGVRRMRPDAFVFIYQGD
                     GDLAAIGTAEIVGAAARGERFSVIFVNNGIYGMTGGQMAPTTLLGQRTTSSPQGREPV
                     LSGYPIPITEMLALMPGVSFAARGSIADPASVGRTKALLRRSFENQISGSGMSIVEVL
                     STCPVGWGLTPTESMEHLSRDVIKTYPLGVFVDRRKDAATHPAEG"
     gene            1256..1810
                     /locus_tag="VIU37_03855"
     CDS             1256..1810
                     /locus_tag="VIU37_03855"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEY6013109.1"
                     /translation="MEHSTIFGGFGGQGLLFAGHVLAEAAVIDGLEVSWMPSYGPEMR
                     GGTASCTVIVADRPIGSPIVDAADSVVALNPPSLAKFESVLVPGGLLVLNASLIEAEP
                     TRTDIEILAVPCTQIAKTAGDDKLVSVVALGALLARRGLVRPVALRAAIEAIVSKKRP
                     QILEADLAAFEAGFNAAAGVVVGG"
BASE COUNT          244 a          633 c          658 g          279 t
ORIGIN      
        1 atgaggtccg ctgggcgggg gagtacctcg aggatgccga gatcgtggtg gtcgcctacg
       61 gcaccgcggc tcgcgtggct cgcacggcgg tcgagcgggc tcgggagcac ggcctgccgg
      121 ccggcatctt ccgcccgatc accctctggc cgttcccgtc ggccgagctg cggacgatcg
      181 ccccgaggct ccgggcggtc gtcgtcctcg agatgtccgc cggccagatg gtcgaggacg
      241 tccggctgtc ggtcgacggc cgagcgccgg tcttcttcca tggccggacc ggtggcatgg
      301 ttcccacgcc aggcgaggtc gtcgacgaac tcaggcgcgc ctgggcgacg acgacaccgg
      361 tcgaggaccc ggcacgggtc gacgcggccg ccgccgagcc ggacccgttg agcttgatcg
      421 aacagggcgc ctgggcggcg accggaatcg ggcggtgagc tgatgtcgac cctgacctcg
      481 gaatcgaagc gcatcgtcta ccgccggccg gacgcgctgg ccgacaggtc gacccactat
      541 tgccccggct gcgggcacgg catcgtccac cgcctggtcg ccgagctgct cgacgagctc
      601 gacgtcacga agcggacgat cggcgtcgcg tcggtcggct gcagcgtgtt cgcctacgac
      661 tacttcacgg tcgacttcgt ggaatcgccg catggccggg cgccggcggt ggcgacgggt
      721 gtccgccgga tgcgccccga cgcgttcgtc ttcatctacc agggcgacgg cgacctcgcg
      781 gcgatcggca ccgccgagat cgtcggcgcg gccgcgcggg gcgagcggtt cagcgtgatc
      841 ttcgtgaaca acgggatcta cgggatgacc ggcgggcaga tggcgccgac cacgctgctc
      901 ggccagcgca ccacgtcgag cccgcagggc cgcgagccgg tgctcagcgg ctatccgatc
      961 ccgatcaccg agatgctggc gctgatgccc ggcgtgtcgt tcgccgcccg cgggtccatc
     1021 gccgatccgg cctcggtcgg acggaccaag gcgctcctgc gccgatcgtt cgagaaccag
     1081 atctccggct cgggcatgtc gatcgtcgag gtcctgtcca cctgcccggt cggctggggc
     1141 ctgacgccga ccgaatcgat ggagcacctg tcccgggacg tcatcaagac ctatccgctc
     1201 ggcgtgttcg tcgaccgccg caaggacgcc gcgacccatc cggcggaggg ctgacatgga
     1261 gcactcgacg atcttcggcg ggttcggtgg ccagggcctc ctgttcgccg gccacgtgct
     1321 ggccgaagcc gcggtgatcg acggtctcga ggtctcgtgg atgccctcgt atgggccgga
     1381 gatgcgcggc gggaccgcgt cctgcaccgt gatcgtcgcg gaccggccga tcggctcgcc
     1441 gatcgtggac gccgccgaca gcgtcgtcgc gctcaacccg ccctcgctcg ccaagttcga
     1501 gtcggtcctg gttccgggcg ggctcctcgt cctgaacgcc tcgctcatcg aggcggagcc
     1561 gacccggacg gacatcgaga tcctggccgt gccctgcacc cagatcgcga agaccgcagg
     1621 agacgacaag ctcgtgagcg tcgtcgcgct gggtgcgctg ctggcgaggc gcgggctcgt
     1681 gcggccggtc gctcttcggg cagcgatcga ggcgatcgtg tcgaagaagc gtccgcagat
     1741 cctcgaggcc gaccttgcgg cgttcgaggc gggcttcaac gcggccgcgg gggtcgtcgt
     1801 cggcggctaa ccgc
//
LOCUS       DATDDI010000273         1669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_380547, whole genome shotgun sequence.
ACCESSION   DATDDI010000273 DATDDI010000000
VERSION     DATDDI010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380547"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1365
                     /locus_tag="VIU37_03860"
     CDS             <1..1365
                     /locus_tag="VIU37_03860"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEY6013110.1"
                     /translation="GLLGNKLKEHRLVTNPLLPLDLGDELALGPFTAIPFRVSHSIPD
                     AMGIALRTPVGTVVHTGDFKFDHTPVDGKPADFSILARLGEEGVVALLSDSTRAENPG
                     YTPSERTVGDAFREIMEPLEGRVIVATFASNIARIQQVLDAAAEMNRSVAVIGRSMEQ
                     NFRIATDLGYLKFDPSRMVAKDKIKDHPDGKLVIATTGAQGEPMAGLARMANGDHRFV
                     EIQPGDTVIVSASPIPGNEEYVSRTIDNLFKAGANVYYHTIKRAHVSGHASQEELKLM
                     LGLTKPKHFIPMHGEFRMQVQHGRLAIETGVLAENVFIIENGTPIELFADGSARRGQP
                     VPAGYVFVDGLSVGDVGEIVLRDRRALANDGMFMVVVTVDKQTGTVIGQPEIVTRGFV
                     HLNEQDPIMAEAVARIVLAIENPGEHISEIALLKTQIKDGVSRYLYEQTKRRPMVFPV
                     VVEV"
     gene            1368..>1669
                     /locus_tag="VIU37_03865"
     CDS             1368..>1669
                     /locus_tag="VIU37_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013111.1"
                     /translation="MANRRRATTPRRSRRRSGLTLPRISLPAVGPEVARSFIGIILLV
                     LGIVTLIALLLPGQGRLTDWWIGSVGPWFGALRWLLPFLLLGGGWYIGWGPGKQPAS"
BASE COUNT          268 a          605 c          548 g          248 t
ORIGIN      
        1 gggctgctcg gcaacaagct caaggagcac cgcctcgtca cgaacccgct gctgccgctc
       61 gacctcggcg acgagctcgc gctggggccg ttcaccgcga tcccgttccg ggtcagccac
      121 tcgatccccg atgccatggg catcgccctc aggacgccgg tcgggacggt cgtccacacc
      181 ggcgacttca agttcgacca cacgccggtc gacggcaagc cggccgattt ctcgatcctc
      241 gcgcggctcg gcgaggaggg cgtggtcgcg ctcctctccg actcgacgcg cgcggagaac
      301 ccgggctaca cgccgtcgga gcggaccgtc ggcgacgcct tccgcgagat catggagccg
      361 ctcgagggcc gggtgatcgt ggcgacgttc gccagcaaca tcgcccggat ccagcaggtg
      421 ctcgacgcgg ctgccgagat gaaccggagc gtggccgtca tcggccgctc gatggagcag
      481 aacttccgca tcgcgaccga cctcggctac ctcaagttcg acccgtcgcg gatggtcgcc
      541 aaggacaaga tcaaggacca cccggacggc aagctggtga tcgcgacgac cggcgcccag
      601 ggcgagccga tggccggcct ggcgcgcatg gccaacggcg accaccgctt cgtcgagatc
      661 cagccgggcg acaccgtcat cgtgagcgcc agcccgatcc cgggcaacga ggagtacgtc
      721 tcgcgcacga tcgacaactt gttcaaggcc ggggccaacg tctattacca caccatcaag
      781 cgcgcccatg tctccggcca cgccagccag gaggagctca agctgatgct cgggctgacc
      841 aagcccaagc acttcatccc gatgcacggc gagttccgga tgcaggtcca gcacggtcgc
      901 ctggcgatcg agaccggcgt cctcgcggag aacgtcttca tcatcgagaa cggcacgccg
      961 atcgagctgt tcgccgacgg cagcgcccgc cgcggccagc ccgtgccggc cggctacgtg
     1021 ttcgtggatg gcctgtcggt cggcgacgtc ggcgagatcg tgcttcgcga tcgacgcgcc
     1081 ctcgccaacg acgggatgtt catggtcgtc gtcaccgtgg acaagcagac cggcacggtc
     1141 atcggccagc ccgagatcgt gacccggggc ttcgtccacc tcaacgagca ggacccgatc
     1201 atggccgagg ccgtggcccg gatcgtcctg gcgatcgaga acccgggcga gcacatcagc
     1261 gagatcgccc tcctcaagac ccagatcaag gacggcgtat cccgctacct ctacgagcag
     1321 acgaagcgcc ggccgatggt cttcccggtc gtggtcgagg tctgagggtg gccaaccgcc
     1381 ggcgagccac cacgccccgc cgatcgcgtc gccggtccgg cctgacgctg ccgcggatca
     1441 gcctgccggc cgtcgggccg gaggtcgccc ggtcgttcat cgggatcatc ctgctggttc
     1501 tcgggatcgt gaccctgatc gcccttctcc tgcccggcca gggccgcctg accgactggt
     1561 ggatcggatc cgtcgggccg tggttcggcg ccctccgctg gctcctgccg ttcctcctgc
     1621 tcggcggcgg ctggtacatc gggtggggac ccggcaagca gcccgcctc
//
LOCUS       DATDDI010000274         2959 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_130877, whole genome shotgun sequence.
ACCESSION   DATDDI010000274 DATDDI010000000
VERSION     DATDDI010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130877"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VIU37_03870"
     CDS             complement(<1..735)
                     /locus_tag="VIU37_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013112.1"
                     /translation="MRLPSRDSIEGLRPISRNLSLDLVAAIGVGIAGALVSSLLPTIA
                     RRGGLEPLGLAVLAATPFLTNLLSIFSGRIGPQTARQFALLRMAGAGSLLVLLVISPA
                     VVIIAVALVFWISVSFSSPFQLRLWGATYPARMRGRVVGFLGTGRAAAAAAAALIGGV
                     LADRIGGPPAVALAGLVGAACSLAYWWFRASAAAAPAAYSARESIDAMRGRPTLGRVA
                     LAQGFFGGGFIAAGPLFALVNVDRLDL"
     regulatory      complement(745..875)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00379"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-AMP (ydaO/yuaA leader) riboswitch senses
                     the signaling molecule cyclic di-AMP; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="cyclic di-AMP"
                     /db_xref="RFAM:RF00379"
     gene            919..1605
                     /locus_tag="VIU37_03875"
     CDS             919..1605
                     /locus_tag="VIU37_03875"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acyl homoserine lactonase family protein"
                     /protein_id="HEY6013113.1"
                     /translation="MSPDAAKPHVEVESFHLADFVHPAESDLSGRPGLVMGYAVRHPD
                     GILLFDTGIGLDNAEITTWLRARMRRLPELLRSRGIHPDDVMAIANCHLHFDHCGQNL
                     AFPGRPVYAQADEYDASRAADYTVPDWVDFPGVRYELIRGEHELLPGVRLVPTPGHTP
                     GHQSMLIDGAGSRVALVGQACYTRAEWEGSDAPEVSGLHGAWSREDYRRSRELLRAFE
                     PDRVLFGHDR"
     gene            complement(1636..1839)
                     /locus_tag="VIU37_03880"
     CDS             complement(1636..1839)
                     /locus_tag="VIU37_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013114.1"
                     /translation="MHQRRLDRLSLDLDLLIARRRADACSPGSPSWDAAMGLVLELEE
                     ALRELEQAPDTRQDHLALSPASN"
     gene            2215..2590
                     /gene="ssrA"
                     /locus_tag="VIU37_03885"
     tmRNA           2215..2590
                     /gene="ssrA"
                     /locus_tag="VIU37_03885"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            2645..>2959
                     /locus_tag="VIU37_03890"
     CDS             2645..>2959
                     /locus_tag="VIU37_03890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013115.1"
                     /translation="MEEVEVVVAHRERTTLRVGDVFLKIDADLTRTDVEVEAMAMAPV
                     PTPKVLWRKPPALALAAVRGKALGRLAEPSAASPAAWAAAGAAIRKLHDAPLPPWRGK
                     GVE"
BASE COUNT          464 a         1008 c         1070 g          417 t
ORIGIN      
        1 caggtcgagc cggtccacgt tgaccagggc gaagagcggg ccagccgcga tgaatccgcc
       61 cccgaagaag ccctgcgcca gcgccactcg cccaagggtc gggcgaccgc gcatcgcgtc
      121 gatggattcg cgggccgagt aggcggccgg tgcggcggcc gccgacgcgc ggaaccacca
      181 gtaggcgagc gagcaggcgg cgcccacgag ccccgcgagc gcgaccgccg gcggcccgcc
      241 gatccggtcg gcgagcacgc cgccgatgag cgcggccgca gccgctgcgg cggcacgccc
      301 ggtacccagg aacccgacga cgcgaccgcg catccgggcc gggtacgtgg caccccagag
      361 gcggagctgg aacggcgagc tgaacgagac gctgatccag aagacgaggg cgacggcgat
      421 gatcacgacc gccggcgaga tgaccagcag gaccagcagc gagcccgcac cggccatccg
      481 caggagggcg aactggcgtg ccgtctgggg cccgatccgg ccggagaaga tgctcagcag
      541 gttggtcagg aacggcgtgg ccgccaggac ggccaggccg agcggttcga ggccgccccg
      601 ccgggcgatc gtgggcagca gcgacgagac gagcgcaccg gcgatgccca caccgatcgc
      661 ggcgacgaga tcgagcgaca ggttgcgcga gatcggtcgc aggccctcga tcgaatcgcg
      721 tgacggcagt cgcaccaggg cacctcagac cagcccagcg gcctgcgagg tgagctgacg
      781 ggctcggcga tgggctcgcc gtcgcggtgg ccccgcgata cgccccggaa gggtggttcc
      841 cccgtcctcg ggcagaggtt cggccggagg cgatcgtagc atcgccggcg gcgacggtct
      901 cccggctacc atcggaccgt gagcccggac gccgccaagc ctcacgtgga ggtggagagc
      961 ttccatctcg ccgatttcgt gcaccccgcc gagagcgacc tctccggccg gccggggctc
     1021 gtgatgggct acgccgtgcg gcaccccgac ggcatcctgc tgttcgacac cgggatcggg
     1081 ctggacaacg ccgagatcac gacctggctg cgcgccagga tgcggcgact gccggagctg
     1141 ctccgcagcc ggggcatcca tccggatgac gtcatggcca tcgccaactg ccatctccat
     1201 ttcgatcact gcggccagaa cctcgccttc ccgggccgtc cggtctacgc ccaggccgac
     1261 gagtacgacg cgtcacgggc ggccgactac accgtcccgg actgggtcga cttcccgggg
     1321 gtccggtacg agctgatccg cggcgagcac gagctcctgc ctggcgtccg gctcgtcccg
     1381 acgcccggcc acacgccggg ccaccagtcg atgctcatcg acggcgcggg gtcgcgggtc
     1441 gcactggtag gccaggcgtg ctacacgcgc gccgaatggg agggatctga cgcgccggag
     1501 gtgtccggtc tccatggcgc ctggagccgg gaggactacc ggcgctcccg cgagctgctg
     1561 cgcgcgttcg agcccgatcg ggtgctcttc ggccacgatc gatagcgtga gggttggtgg
     1621 cgccgggacc ggccgtcagt tggaggctgg cgagagggcg aggtgatcct gcctcgtatc
     1681 gggtgcctgc tcgagctcgc gcagcgcttc ctcgagctcc aggaccaggc ccatggcggc
     1741 gtcccatgac ggactaccgg gcgaacaggc gtcggcccgg cgccgggcga tcaacaggtc
     1801 gaggtcgagg ctgagccgat cgagtcttcg ctggtgcatc tgcgaatagt cgatgggcgg
     1861 gcgcctgctc gcagcgggcc atccgtcacg atctgggcag gtcaagcgac ccgacacgcc
     1921 gcgacgagcg tgacggtggt tctcgcactc ggactgagcc ccgttgacgc tgcctaggcg
     1981 tcggcccatg ctcgggcggt gaagcaacga cccgagttcg tgttgggggg cgcaatcctg
     2041 ctgctgcgac tggccgccct agtagccgtc gtggttctgc tcgtcctgat cgccgctcga
     2101 tgggtgtcgg catgaagcta tcgaagatgc cggccctcct cgtcgactgg aacacttgtc
     2161 cgaaatgggc tgcccggcta gaatcgtgtg tccgagccga gaactcggtc ctgtggggat
     2221 gtgtggtttc gacagggctt ggctatcggg gaacgcgagc cgaggatgct gctcaggcct
     2281 cgttaatcag gcagcaaaac gaagtacctg gcaaccgcca gtcgactctc gccctcgctg
     2341 cttaggcagt aaggtgagcg tggaagctac ctccgctccg cgggtagtgg aagcgtcatt
     2401 cagcggggct gcgatccgga tcagcgttgc gtagtccgga gtcaagcccg atctaggggc
     2461 acgcgactgg accgtccggc agggtgccga tgttcgttcg ggcggtcgac gacaaaccat
     2521 cggacacgct cgtagtggtc cccggtgaag ggtcctggac ggggagttcg actctccccc
     2581 atctccacca acacctcgtt gacccgtcgc cgactcgtgg tggtcagcca cgataatggc
     2641 cgacgtggaa gaggtcgagg tcgtcgtcgc ccatcgcgag cgcacgacgc tgcgcgtcgg
     2701 cgacgtcttc ctgaagatcg acgccgatct gactcgcacc gacgtcgagg tcgaggcgat
     2761 ggcgatggcg ccggtgccga cgccgaaggt cctctggcgg aagccgcccg cgctcgcgct
     2821 cgccgcggtt cgggggaagg cgctcggccg cctcgcggag ccgtcggccg cctcgcccgc
     2881 cgcctgggcc gccgcgggtg ccgccatccg gaagctgcac gacgcgccgc tgccgccctg
     2941 gcgcggaaag ggcgtcgaa
//
LOCUS       DATDDI010000275         5511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_68498, whole genome shotgun sequence.
ACCESSION   DATDDI010000275 DATDDI010000000
VERSION     DATDDI010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5511
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68498"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1231)
                     /gene="gpmI"
                     /locus_tag="VIU37_03895"
     CDS             complement(<1..1231)
                     /gene="gpmI"
                     /locus_tag="VIU37_03895"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEY6013116.1"
                     /translation="MTAAQPRRPRPIVLVVLDGFGIGRDPAIDAIAATPMPVWRGLLR
                     DWPHAILRASEDAVGLPPGQMGNSEVGHLNLGAGRPVLQDLPRIDAAIADGSFATRPA
                     LLEACRRATEPGRRLHLVSLVGPGGVHANDRHLVEVARLAAATGVASVRVHALLDGRD
                     TPPRSALEFVADLERRLREVHPDARIASVGGRYYAMDRDKRWERVERGYDAIVHGEGE
                     RAASATAAVEAAYARGENDEFVSPTVIDAGDGIVEPGDAIVHCNFRADRARELVHALV
                     DPGFAAFDPASPSGRPAPAGLLVVTMTEYEGGLAVQVAFPPEQARSLAQAFSEAGWRQ
                     FHVAETEKYAHVTYFFNGGVEAPYPGEDRLLIPSLKVATYDLAPEMKAGAITAALVEA
                     IGSGTYDFIVANYANPDM"
     gene            complement(1228..2019)
                     /gene="tpiA"
                     /locus_tag="VIU37_03900"
     CDS             complement(1228..2019)
                     /gene="tpiA"
                     /locus_tag="VIU37_03900"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEY6013117.1"
                     /translation="MREVIVAGNWKMHTVPAEAGQLARTIAARTRIPGVVRVICPPYT
                     SLAAVREALAEDDPDVGVGAQNVHHELQGAYTGEVSAPMLAGLANWVIVGHSERRRDA
                     GETDALIGRKLQRAIEAGLRPILCVGEQLAEREAGEQETVVGRQVSGALAGQVPATLE
                     GAGLVIAYEPVWAIGTGRTASGRDAAAMAAAIRATLAELGFTDGGQHVPVLYGGSVTS
                     ASMDEFMAEPSIDGALVGGASLKPDEMAGIVTRAGLTASARAGAE"
     gene            complement(2028..2870)
                     /gene="whiA"
                     /locus_tag="VIU37_03905"
     CDS             complement(2028..2870)
                     /gene="whiA"
                     /locus_tag="VIU37_03905"
                     /inference="COORDINATES: protein motif:HMM:TIGR00647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0043937 - regulation of sporulation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEY6013118.1"
                     /translation="MSRSERDLVTALRDELAAIDPSRSCDRIAEADGLGPGPIGREPS
                     VARLAVRLRRAAERSAATPFDWTAAGEHCHAAWLRGRFLARGSLSLAGGRTHLEFVIA
                     PDEAPTLVARLADIGLPASWRLRRGRGVVTSKSGEAVGTFLRRIGATGALLEVEARQV
                     SRALRGELNRVLNAESANLQRAVSAAGRQLDAIATLDADGRLAVQPPIVRLVAAARRA
                     TPEASLAELAEQLGAHRSTVQRALERVERLALDPDAGPGTTHPARRRERSRRCLHAPR
                     HAVA"
     gene            complement(2880..4202)
                     /locus_tag="VIU37_03910"
     CDS             complement(2880..4202)
                     /locus_tag="VIU37_03910"
                     /inference="COORDINATES: protein motif:HMM:TIGR01826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconeogenesis factor YvcK family protein"
                     /protein_id="HEY6013119.1"
                     /translation="MNLRRWLAPGIGIKRWLLVLFTGLLLLSLAFAHFLRQVTHDLTP
                     GGIAGSVLDLLTLQFLPLAVRGFLVGAAGVVLVVIGAYRTVRALMGPFQRTDADQPLV
                     ELIYQKRFLARGPRIVAIGGGTGLSILLRGLKEHTSNLTAIVTVADDGGSSGVLRTSL
                     GIPPVGDIRNCIAALADAEPLMSEVLQYRFPETPGDEAPGLAGHALGNLLIAAMTAVE
                     GGDFEDGVRLVNRILAVRGRVLPVTATPLTLHARYGGGSVVDGQSLIMRTSGIERVWL
                     SPAEIQASEDALSAIAEAELIVLGPGSLYTSLLPSLLIPAIRDAVLAADGLRVFVCNV
                     ATQDGETAGFDLAAHLEVLAAHTSPGLVDVALANNSFVARTPPDWSAERVKLRWPPVG
                     FAAPRLVLDDVVDPDNAHHHDPVRLAGALIRTLESNRGSRHRAVSRTA"
     gene            complement(4199..5107)
                     /gene="rapZ"
                     /locus_tag="VIU37_03915"
     CDS             complement(4199..5107)
                     /gene="rapZ"
                     /locus_tag="VIU37_03915"
                     /inference="COORDINATES: protein motif:HMM:NF015620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEY6013120.1"
                     /translation="MTGEADVRPASDSAAEPAVVILSGLSGGGKTAAAKLFEDLGYTV
                     VDNLPGELLPDLAELVSSDRERFARVAIVVDVRAGDPTIALAAMRGALEGRGIRPRVV
                     FLEARDDVLIRRFSETRHRHPLEDDQGIAASIQEERRILEPVRGDSDVVVDTSDLSLR
                     QLRERLFAQLATDVRPDQLAIQFISFGYKFGVPLESDLLFDVRFMQNPYYLAELRPLS
                     GLTDEVRAFVLDQPVAQRYLGLMREFLDFAIPAYIAEGKTRLTIGVGCTGGYHRSIVI
                     AEELAAWLRGRDVGPVAVFHRELDRT"
     gene            complement(5104..>5511)
                     /locus_tag="VIU37_03920"
     CDS             complement(5104..>5511)
                     /locus_tag="VIU37_03920"
                     /inference="COORDINATES: protein motif:HMM:NF013097.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEY6013121.1"
                     /translation="RKIVRPWIPMALVFFAIGVIIAYIVLPFAINFLFSFTDDQLVAQ
                     PAAGPYFDFVTTMFLAFGLVMEFPILLVGLSRVGIITSQRLTSSRRYIILGISIFAAV
                     VTPGGDLVSPFVLGGTMYVLFELTVLFIRRSGR"
BASE COUNT          812 a         1947 c         2046 g          706 t
ORIGIN      
        1 ccatgtccgg gttcgcgtaa ttggcgacga tgaagtcgta cgtgcccgaa ccgatcgcct
       61 cgaccagcgc agccgtgatc gcaccggcct tcatctcggg cgccaggtcg tacgtggcga
      121 ccttgaggct cggaatgagg aggcgatcct cgccagggta cggcgcctcg acgccgccgt
      181 tgaagaagta ggtcacgtgg gcgtacttct cggtctcggc cacgtggaac tggcgccagc
      241 cggcctccga gaaggcctgg gccaacgacc gtgcctgttc cggcgggaag gcgacctgga
      301 ccgcgagccc accctcgtac tcggtcatgg tcaccaccag cagcccggcg ggggccggcc
      361 gtcccgatgg cgacgccggg tcaaacgcgg cgaagccggg gtcgaccagg gcgtggacca
      421 gctcgcgcgc gcggtcggcc cggaagttgc agtggacgat cgcgtcgccc ggctcgacga
      481 tcccgtcgcc ggcgtcgatc accgtcgggc tcacgaactc gtcgttctcg ccacgggcgt
      541 aggcggcctc gacggccgcg gtcgcgctgg ccgcccgctc cccctccccg tggacgatcg
      601 cgtcgtaccc gcgctcgacg cgctcccagc gcttgtcgcg gtccatcgcg taatagcgcc
      661 cgccgaccga cgcgatccgg gcgtcaggat gcacctcgcg cagccggcgc tcgaggtcgg
      721 cgacgaactc gagcgcggac cggggcggcg tgtcccgtcc gtcgagcagg gcgtggacgc
      781 ggacactggc gacgccggtc gcggcggcga gccgggcgac ctcgaccagg tgccggtcgt
      841 tggcatggac gccgcccggg ccgacgaggc tgaccaggtg gagccggcga ccgggttcgg
      901 tggcacggcg gcacgcctcg agcagggcgg gccgggtcgc gaagctgccg tcggcgatgg
      961 ccgcgtcgat ccgcggcagg tcctggagga cgggacgacc ggcgcccagg ttcaggtggc
     1021 cgacctcgga gttgcccatc tgtccgggcg ggaggccgac ggcgtcctcg gacgctcgca
     1081 ggatcgcgtg gggccagtcg cgcaggaggc cacgccagac cggcatcggc gtcgccgcga
     1141 tcgcgtcgat cgcagggtcg cggccgatcc cgaagccatc caggacgacg aggacgatcg
     1201 gtcgaggacg ccgcggttgc gccgcggtca ctcggccccc gcccgggccg atgccgtcaa
     1261 gccggcccgg gtcacgatgc cggccatctc gtccggcttg agagaggcgc cgccgacgag
     1321 cgcgccgtcg atcgacggtt ccgccatgaa ttcgtccatc gaggccgagg tgacgctgcc
     1381 gccgtacagc acggggacgt gctggccgcc gtcggtgaag ccgagctcgg cgagcgtcgc
     1441 gcggatcgcg gcggccatcg cggcggcatc gcggccactg gcggtgcgac ccgtgccgat
     1501 cgcccagacc ggttcgtagg cgatcaccag cccggcgccc tcgagcgtcg cggggacctg
     1561 cccggcgagt gcgccgctga cctggcggcc gacgacggtt tcctgctctc ccgcctcgcg
     1621 ttcggcgagc tgctccccga cgcacaggat ggggcgcaga cccgcttcga tcgcccgctg
     1681 gagcttccgg ccgatcagcg cgtcggtctc gccggcatcg cggcgtcgct cggaatggcc
     1741 gacgatcacc cagttcgcca gcccggccag catgggcgcc gagacctcgc ccgtgtacgc
     1801 gccctggagc tcgtggtgga cgttctgggc accgacgccg acgtccgggt cgtcctcggc
     1861 gagggcctcc cgcacggccg caaggctggt atacggcggg cagatgaccc ggaccacgcc
     1921 ggggatccga gtccgcgccg cgatcgtccg cgcgagctgc cccgcctccg ccgggacggt
     1981 gtgcatcttc cagttcccgg ccacgatcac ttcgcgcatc gcctgaatca tgccaccgcg
     2041 tgacgaggtg cgtgcaggca acggcgagag cgctctcggc gccgggcggg gtgcgtcgtg
     2101 ccgggtcccg cgtccggatc gagcgccagc cgctcgacgc gttcgagggc tcgctggacc
     2161 gtcgaccggt gggcgccgag ctgctccgcg agctcggcca ggctcgcctc cggcgtcgct
     2221 cgccgggcag cggcgacgag ccgcacgatc ggcggctgga ccgcgagccg gccgtccgcg
     2281 tcgagcgtcg cgatggcatc cagctgccgg ccggccgcgc tgaccgcccg ctgcaggttg
     2341 gccgattccg cgttgaggac ccggttgagc tcaccacgca gggcccgcga gacctggcgc
     2401 gcctcgacct cgagcagcgc tccggtcgcg ccgatgcggc gcaggaacgt gccgaccgcc
     2461 tcgccgctct tggacgtcac gacgccgcgg ccgcggcgga gccgccacga cgcaggcagt
     2521 ccgatgtcgg ccagcctggc gacgagcgtc ggcgcctcgt ccggcgcgat gacgaactcg
     2581 aggtgggtcc ggccaccggc gaggctgagc gatccgcggg ccaggaaccg tccgcggagc
     2641 caggcggcgt ggcagtgctc gccggcggcc gtccagtcga acggcgtcgc ggcactgcgc
     2701 tcggcggcgc ggcgcaaccg gacggccagc cgtgcgaccg acggttcgcg tccgatcggt
     2761 cctggcccga ggccgtccgc ctccgcgatc cggtcgcacg agcgagacgg gtcgatggcc
     2821 gcgagctcgt cgcggagcgc cgtcaccagg tcgcgctcgg atcggctcac caggtgctcc
     2881 taagcggtcc ggctcaccgc gcggtggcgg ctgccgcggt tcgattcgag ggtgcggatg
     2941 agcgcgccgg ccaggcgaac cgggtcgtgg tggtgcgcgt tgtccgggtc cacgacgtcg
     3001 tcgaggacga ggcgcggggc ggcgaagcca accggcggcc agcgcagctt cacccgctcc
     3061 gccgaccagt cgggcggcgt ccgcgcgacg aagctgttgt tcgccagggc gacgtcgacc
     3121 agcccgggcg acgtgtgcgc ggcaagcacc tcgaggtgcg cggccaggtc gaagccggcg
     3181 gtctcgccgt cctgggtggc cacgttgcag acgaacaccc ggaggccgtc ggccgcgagg
     3241 accgcgtcgc ggatggccgg gatgagcagg ctgggcagca ggctggtgta caggctgccg
     3301 gggccgagga cgatcagctc cgcctcagca atcgcactga gggcatcctc ggacgcctgg
     3361 atctcggccg ggctcagcca gacgcgctcg atgccggagg tccgcatgat cagcgactgc
     3421 ccgtccacca cggaaccgcc cccgtatcgg gcgtgcaagg tcagcggcgt ggcggtcacc
     3481 ggcaggacgc ggccacgcac ggcgaggatg cggttgacca gccggacgcc atcctcgaag
     3541 tcgccgccct cgaccgcggt catggccgcg atcaggaggt tccccagcgc atggccggcg
     3601 aggcccggcg cttcgtcgcc gggtgtctcc gggaagcggt actggagcac ctcgctcatc
     3661 agcggctcgg cgtccgccag tgcggcgatg cagttgcgga tgtcgccgac cggcgggatg
     3721 ccgaggctcg tccgcagcac ccccgaggag ccgccatcgt cggcgaccgt gacgatcgcc
     3781 gtgaggttgc tcgtgtgctc cttgagcccg cgcaggagga tcgacaggcc ggtcccgccg
     3841 ccgatcgcga cgatccgcgg gccgcgggcg aggaaccgct tctggtagat gagctcgacc
     3901 agcggctggt cggcgtcggt ccgctggaac ggacccatca gcgcgcggac ggtccgatag
     3961 gcgccgatca cgaccaggac cacgccggcg gccccgacca ggaacccgcg gacggcgagc
     4021 ggcaggaact ggagggtcag caggtcgagg acggagccgg cgattccgcc cggcgtgagg
     4081 tcgtgcgtca cctggcgcag gaaatgggcg aacgccagcg acagcaggag caacccggtg
     4141 aacaggacca gcagccagcg cttgattccg atcccggggg ccagccagcg gcggaggttc
     4201 acgtccggtc gagctcccgg tggaacacgg cgaccggacc cacgtcgcgg ccgcgcagcc
     4261 aggcggccag ctcctcggcg atgacgatcg agcgatggta tccgccggtg catccgacgc
     4321 cgatcgtcag acgggtcttg ccctccgcga tgtacgccgg gatggcgaag tcgaggaact
     4381 cgcgcatcag gcccaggtag cgctgcgcga cgggctggtc gaggacgaag gcacggacct
     4441 cgtcggtcag tcccgacagc ggacgcagct cggcgaggta gtaggggttc tgcatgaacc
     4501 ggacgtcgaa caacaggtcc gattcgagag ggacgccgaa cttgtagccg aagctgatga
     4561 actggatcgc cagctggtcg ggtcgcacgt cggtggccag ctgggcgaac agccgctcgc
     4621 ggagctggcg gagcgacagg tcggacgtgt cgacgaccac gtccgagtcc ccccggacgg
     4681 gctccaggat ccgccgctcc tcctggatcg atgcggcgat cccctggtca tcctcgagcg
     4741 ggtgccggtg gcgcgtttcg ctgaaccgcc ggatcagcac gtcgtcgcgc gcctcgagga
     4801 agacgacccg cgggcggatc ccgcgaccct cgagggcgcc gcgcatcgcg gccagggcaa
     4861 tcgtggggtc gccggcccgg acgtcgacca cgatcgccac ccgcgcgaag cgctcgcgat
     4921 cggacgagac gagctcggcg aggtccggca gcagctcgcc gggcaggttg tcgacgaccg
     4981 tgtagccgag atcctcgaag agcttggccg ccgccgtctt gccgccaccc gacaggccgc
     5041 tcaggatgac gaccgcgggc tccgccgccg agtccgacgc cggtcggacg tcggcctctc
     5101 cggtcaccgc ccgctgcgcc ggatgaacag gacggtcagc tcgaacagga cgtacatcgt
     5161 cccgcccagg acgaacgggc tgaccaggtc gccgccgggg gtgaccaccg cggcgaagat
     5221 cgagatgccg aggatgatgt agcggcgcga ggacgtcagc cgctgcgacg tgatgatgcc
     5281 gacccgcgac aggcccacga gcaggatcgg gaactccatc accagcccga aggccaggaa
     5341 catcgtggtc acgaagtcga agtacggacc ggcggccggc tgcgcgacca actggtcgtc
     5401 ggtgaagctg aagaggaagt tgatcgcgaa cggcagaacg atgtaggcga tgatcacgcc
     5461 gatcgcgaag aagacgagcg ccatcgggat ccacggccgc acgatcttgc g
//
LOCUS       DATDDI010000276         2385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_297258, whole genome shotgun sequence.
ACCESSION   DATDDI010000276 DATDDI010000000
VERSION     DATDDI010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297258"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..844
                     /gene="pstS"
                     /locus_tag="VIU37_03925"
     CDS             <1..844
                     /gene="pstS"
                     /locus_tag="VIU37_03925"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEY6013122.1"
                     /translation="SDAYLKDSEVQAAAANGEPVEIPVTFGAVVVAYNLQGLSAPIQM
                     TPEIVAGIFLGTITKWNDAAIVAQNAGINLPDTDISVVHRSDGSGTTSIFTTYLTAVS
                     PDWVTTVGGGDPTKSAGKEVEWPTGLGASGNEGVTQGINQTDGGVGYIELAYALKNNI
                     PFATLQNKAGNFIVPSLDSVKAAADLPSYPGDLRFNLANTDSPQGYPITGTTWVIVYK
                     DLSKVLKSQDRANALVDFLWWAIHDGQADASPLFYGSIPASLLAQDEAAVKSLNWAGT
                     PLLP"
     gene            920..1888
                     /gene="pstC"
                     /locus_tag="VIU37_03930"
     CDS             920..1888
                     /gene="pstC"
                     /locus_tag="VIU37_03930"
                     /inference="COORDINATES: protein motif:HMM:TIGR02138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEY6013123.1"
                     /translation="MTTTSRPQGIHALRRPRGLGQDGVFRLTLRVVAVLVVIPVLWMM
                     VDTFAETVPVWERFGIPGFVTGLRWAPSFTIYGALPFIYGTLLTSAIAMVIAVPVAVL
                     IALLVTEILPPRARTWVAVTVDLLAAIPSVVYGLWGLLVLVPVLRPFEQAVAGTAGKV
                     VPFLAGPTPGPSYFAAGVVVSIMIIPIIAALSREVFAATPRLQREAVRALGGTRWDVI
                     RTVVIPLGRSGVLAAIILGLARAIGETIAVTMVIGNAPKIGASIFSPGFTLASVIANE
                     FNEANQELHPEALIALGLVLLVISVLVNGLAILIRQRFARGVGRVV"
     gene            1899..>2385
                     /locus_tag="VIU37_03935"
     CDS             1899..>2385
                     /locus_tag="VIU37_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013124.1"
                     /translation="MSDRLRATSRARHAKDRALMVLAWAALAVAVIPLVAIAWFLLEQ
                     GVRSISLEFFTSDPPGDLSATGGGIRNAVVGTLLMTGLATLIAVPAGIALAVFAREIG
                     GRVAAAVRFVVDVLAGLPSIVVGIFVYSLVVVTTGHFSGFAGAVALAVIELPVIVVAS
                     DE"
BASE COUNT          317 a          863 c          801 g          404 t
ORIGIN      
        1 ctccgacgcc tacctcaagg acagcgaggt ccaggccgcc gcggccaacg gcgagccggt
       61 cgagatcccg gtcacgttcg gcgctgtcgt cgtcgcctac aacctgcagg gcctgtcggc
      121 cccgatccag atgacccccg agatcgtcgc cggcatcttc ctcggcacga tcaccaagtg
      181 gaacgatgcg gcgatcgtcg cccagaacgc cggcatcaac ctgcccgaca ccgacatcag
      241 cgtcgtccat cgctcggacg gctcgggcac cacgagcatc ttcacgacct acctgaccgc
      301 cgtcagtccc gactgggtga ccacggtcgg tggcggcgac ccgaccaagt cggccgggaa
      361 ggaagtcgag tggccgaccg ggctcggtgc ctcgggcaac gagggcgtca cccagggcat
      421 caaccagacc gacggtggcg tcggctacat cgagcttgcc tacgcgctca agaacaacat
      481 cccgttcgcg acgctccaga acaaggccgg caacttcatc gtcccgtcgc tcgactccgt
      541 caaggcggcc gccgacctgc cgtcgtaccc gggcgatctg cgcttcaacc tcgcgaacac
      601 cgactcgccg cagggctatc cgatcaccgg caccacctgg gtgatcgtct acaaggacct
      661 ctcgaaggtg ctcaagagcc aggatcgggc gaacgcgctg gtcgacttcc tctggtgggc
      721 cattcacgac ggccaggcag acgcctcgcc gctgttctac ggatcgatcc ccgctagtct
      781 tctcgcccag gacgaggcgg cggtgaagtc cctgaactgg gccggcacgc cactcctccc
      841 gtgatcggct agttcccggc agggaatgcc atccgggagc tcggacccgg gtggcgttcc
      901 cgccttttcg gaggaatggt tgacgacgac ctcgcgaccc caggggatcc acgcgctgcg
      961 gcggccgcgc ggcctcggcc aggacggcgt gttccggctg acgctgcgcg tcgtcgccgt
     1021 cctcgtcgtc atcccggtcc tgtggatgat ggtggacacg ttcgccgaga ccgtgccggt
     1081 ctgggagcgg ttcgggatcc ccgggttcgt gaccgggctg cggtgggctc cttcgttcac
     1141 gatctacggc gcgctgccgt tcatctacgg cacgctcctg acgtcggcca tcgcgatggt
     1201 catagccgtc ccggtggccg tcctcatcgc actcctggtc acggagatcc tgccgccccg
     1261 ggcaaggacc tgggtcgcgg tcaccgtgga cctgctcgcg gccatcccat cggtcgtcta
     1321 cggcctgtgg gggctcctgg tcctcgtccc ggtcctgcgc ccgttcgagc aggcggtggc
     1381 gggaacggcc ggcaaggtcg tgcccttcct ggccgggccg acgccgggcc ccagctactt
     1441 cgcggccggc gtggtcgtct cgatcatgat catcccgatc atcgccgccc tcagccgtga
     1501 ggtcttcgcg gccacgcccc ggctccagcg cgaggcggtc cgggccctcg gcggcacgcg
     1561 ctgggacgtg atccggaccg tggtgatccc gctcgggcgg agcggggtgc tcgccgcgat
     1621 catcctgggc ctggcccggg ccatcggcga gacgatcgcg gtgacgatgg tgatcgggaa
     1681 cgcaccgaag atcggagcct cgatcttcag tccgggcttc acgctggcct cggtcatcgc
     1741 caacgagttc aatgaggcca accaggagct ccaccccgag gccctgatcg ccctgggcct
     1801 cgtgctgctg gtgatctcgg tcctggtcaa cggcctcgcg atcctcatcc gccagcgctt
     1861 cgcccgtggg gtgggacgtg tcgtctagca cgctcgcggt gtcggaccgc ctgcgggcca
     1921 cgtcgcgggc gcgacacgcc aaggaccgcg cgctcatggt cctggcctgg gcggccctcg
     1981 cggtcgcggt catcccgctg gtggcgatcg cctggttcct gctggagcag ggcgtccgct
     2041 cgatctcgct cgagttcttc acctcggacc cgcccggcga cctcagcgcg accggcggcg
     2101 ggatccgcaa cgccgtggtc gggacgctgc tgatgaccgg cctggcgacg ctgatcgccg
     2161 tcccggccgg gatcgccctg gcggtcttcg cccgcgagat cggcgggcgg gtcgccgccg
     2221 cggtccgctt cgtggtggac gtcctcgccg ggctgccgtc gatcgtggtc gggatcttcg
     2281 tctactcgct ggtcgtcgtg acgaccgggc acttctcggg cttcgccggc gcggtcgccc
     2341 tcgcggtgat cgagctgccg gtgatcgtgg tcgcctcgga cgagc
//
LOCUS       DATDDI010000277         4431 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_484578, whole genome shotgun sequence.
ACCESSION   DATDDI010000277 DATDDI010000000
VERSION     DATDDI010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4431)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484578"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..647
                     /locus_tag="VIU37_03940"
     CDS             <1..647
                     /locus_tag="VIU37_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013125.1"
                     /translation="SKGSETAQSLRLVWVETSLAVGTALLSIGVFMKAGFSTLTLTVD
                     TLLLWSVLIYGSATDYALGDPDRPPESLRRKAALELTDGPIGKVVRPSFLIVGAAAVL
                     VAALVVEAGRAPVQPSEGGVPQALGGLPEIALGPSPGPSLEPGATQPPGSSPTPAPAA
                     SAMPTATPSSSATPTPVPSSPPPVPSASPVPSATPAPTTSPAASSTPAPTPSPS"
     gene            827..3010
                     /locus_tag="VIU37_03945"
     CDS             827..3010
                     /locus_tag="VIU37_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013126.1"
                     /translation="MSRQPFSRSVRRLGTTITACLLAIAPVGVPVAGPVVSGVAAADS
                     SCNLGAGGAVKHVIYIQFDNTHLRRDNPNVPSDLEQMPNLLNFMRDNGTLLSNDHTVL
                     ISHTAGGILSSLTGVYPDRHGQIVSNSNVRYNGAGFSFPSSFGYWTDPVLPSALNVPN
                     MVTPDGKNAPAPWVPYTRAGCDFGAIATANTVLENTSTSPSGDITKVFGNPSPQATEA
                     SASAAAPSGTAARALAQTDFVGFAIHCAQDSAVCATAPSHDDLLPDEPGGYTGFKGVF
                     GAQDIDPLLTGGPASTPVTALDGAPITDPFGQPGFPGFDGMSAAVSLAYTAEMQEAGV
                     PVTFAYISDAHDNHGTSGNAHIAYGPGSAGYVAQLKAYDDAFGAFFARLAADHIDKSN
                     TLFVFTVDEGDHFAGVQKTDCDGVTTPCVYGPNEVGEINANIKTLVANQTTGLGTAWT
                     VHGDDAPTFYLSNNPGETDPFVRNFERQVSGLTAVNPYTGATDHLMVAMADRAEMKLL
                     HMYTAGDPLRDPTFAYFANADYFLTDFPASTCLTCINPAFAWNHGDIQPEIADTWLGF
                     VGPGIRTLGETGEVWTDHTDVRPTMLVDLGLSTSYLNDGRAILEILDGNAVPHSLNVH
                     RGSIQALGAAYKQLAAPFGALGMASLSFATAAIQTGSGSDDSAYTAAQAKLADWLARR
                     DTLAGDIAAALEGAEFGGAGLSEAQLKSLTKQANALVDEVVAAAS"
     gene            complement(3151..3765)
                     /locus_tag="VIU37_03950"
     CDS             complement(3151..3765)
                     /locus_tag="VIU37_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013127.1"
                     /translation="MAAEPVVRLFGFRPTRPAFDNVIRDWMVPAISARRGVVRAFAGR
                     HGPDELGPRLVLSVWESREAMDVALDGSPRPGEFRPEGLDGIAEPTVEVLSPRIAYLA
                     DRTVAPPRIIRVLRGCARQGKLNQYVEETRAGVAADVAAGHGPAAFYLAEGTTAEAFV
                     TVSVWAAWSAIELATGSDIHRPLATRRPELIDAFEATHYEAIDL"
     gene            complement(3876..>4431)
                     /locus_tag="VIU37_03955"
     CDS             complement(3876..>4431)
                     /locus_tag="VIU37_03955"
                     /inference="COORDINATES: protein motif:HMM:NF042530.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HEY6013128.1"
                     /translation="EIQSSRLRARLSPSGEPILLLDQDRARWDQLLIRRGLAALERAE
                     SLGGAYGPYTVQAAIAACHARATSPEETDWTRITALYDALAQLTPSPVVELNFAAAIA
                     MAEGPAVGLAMMDGIAASGELERYPYLHAARADLLRRLGRWSEAETAYRRALGLTANG
                     IERAYLERRLVEVATARGADSHAN"
BASE COUNT          659 a         1673 c         1491 g          608 t
ORIGIN      
        1 agtccaaggg atcggagacg gcgcagtcgc tgcggctggt ttgggtcgaa acgagccttg
       61 cggtggggac cgccttgctc tcgatcgggg tgttcatgaa ggccggcttc tcgaccctca
      121 cgctcaccgt cgacacgctg ctgctgtgga gcgtgctgat ctacggttcg gcgaccgact
      181 atgcgctcgg cgatcccgac cgtccgccgg agtccctgcg ccgcaaggcg gcactcgaac
      241 tgaccgacgg accgatcggc aaggtggtcc ggccgagctt cctgatcgtg ggtgccgcgg
      301 ccgtcctggt ggcggcgctc gtcgtcgagg cgggccgcgc acctgtccag ccgagcgagg
      361 gcggcgtccc gcaggcgctc ggcgggttgc ccgagatcgc gctcgggcca agccccgggc
      421 cctcgctcga acccggcgcg acgcagccac ccgggtcgtc gccgacaccg gcaccggccg
      481 cctccgcgat gccgacggcg acgccatcca gcagcgccac gcccacgccg gtgccatcga
      541 gcccgccacc ggtcccatcg gcgtcgcccg tcccgagtgc cacgccggcc ccgaccacat
      601 ccccggcggc ctcgtcgacc cctgccccta ctccgtcgcc gagctgatcc ggccggcgag
      661 ccgtgcgtcg ccggcagggc attgcagcta cgtttcaaac cctgccgaaa cgttcacacg
      721 ccgttgacgc gggcctatcg ttcccgccac acgctgtcat ggccgccccg gccggcccac
      781 ccatcccgtg gccgtccgcg cgaccgctca tccccggagg aggcgcatgt ctcgtcaacc
      841 gttcagccgg tccgtccgcc ggctcggcac caccatcacg gcctgcctgc tcgcgatcgc
      901 cccggtcggc gtaccggtcg cgggcccggt cgtctcgggg gtcgccgcgg cggactcgtc
      961 gtgcaacctc ggcgccgggg gcgcggtgaa gcacgtcatc tacatccagt tcgacaacac
     1021 ccacctgcgg cgcgataacc cgaacgtgcc gtccgacctc gagcagatgc cgaacctgct
     1081 caacttcatg cgcgacaacg gcacgctcct gagcaatgac cacaccgtcc tgatctcgca
     1141 cacggccggc ggcatcctgt cgtcgctgac cggcgtctac ccggatcggc atggccagat
     1201 cgtgtcgaac tcgaacgtcc ggtacaacgg cgcgggcttc tccttcccga gctcgttcgg
     1261 ttactggacc gacccggtcc tgccaagcgc gctcaacgtc ccgaacatgg tcaccccgga
     1321 cggcaagaac gcgcccgcgc cgtgggtgcc gtacacgcgc gccggctgcg acttcggcgc
     1381 gatcgcgacc gccaacaccg tcctcgagaa cacgagcacg agccccagcg gcgacatcac
     1441 caaggtcttc ggcaacccgt cgccgcaggc aaccgaggcg agcgcgtcgg ccgcggcacc
     1501 gtccggcacc gccgcgcggg cgctcgccca gacggacttc gtcgggttcg cgatccactg
     1561 cgcgcaggac tcggccgtgt gcgcgaccgc cccgtcccac gacgacctcc tgcccgacga
     1621 gccgggcggc tacaccgggt tcaagggcgt cttcggcgcc caggacatcg acccgctgct
     1681 gaccggcggg ccggccagca cgccggtgac cgcgctcgac ggcgcgccga tcaccgaccc
     1741 gttcgggcag cccgggttcc ccggcttcga tggcatgtcg gcggccgtct cgctggccta
     1801 taccgccgag atgcaggagg ccggcgtgcc ggtcacgttc gcctacatct ccgacgcgca
     1861 cgacaaccac ggcacgtcgg gcaacgccca catcgcctac gggccgggct cggccggcta
     1921 cgtggcccag ctcaaggcgt acgacgacgc gttcggcgcc ttcttcgccc gtctggccgc
     1981 ggaccatatc gacaagtcga acacgctgtt cgtgttcacc gtcgacgaag gcgaccactt
     2041 cgccggcgtc cagaagacgg attgcgacgg cgtcaccacg ccgtgcgtct acggaccgaa
     2101 cgaggtcggc gagatcaacg cgaacatcaa gaccctcgtc gccaaccaga cgaccggtct
     2161 cggcaccgcg tggaccgtcc acggcgacga cgcgccgacc ttctacctgt ccaacaaccc
     2221 cggcgagacg gacccgttcg tccgcaactt cgagcgacag gtctcggggc tcaccgcggt
     2281 gaacccgtac accggcgcca ccgaccatct catggtcgcc atggccgacc gggccgagat
     2341 gaagctcctc cacatgtata ccgccgggga tccgctgcgc gaccccacgt tcgcctactt
     2401 cgcgaacgcc gactacttcc tgaccgactt cccggcgagc acgtgcctga cctgcatcaa
     2461 cccggcattc gcctggaacc atggcgacat ccagccggag atcgccgaca cctggctcgg
     2521 gttcgtcggt ccgggcatcc ggaccctggg cgagaccggc gaggtgtgga cggaccacac
     2581 cgacgtccgg ccgacgatgc tcgtcgacct gggcctgtcg acgtcctacc tgaacgacgg
     2641 ccgggcgatc ctcgagatcc tcgacggcaa cgccgtgccg cattcgctca acgtccatcg
     2701 cggctccatc caggcactgg gcgccgcgta caagcagctg gccgcaccgt tcggagcgct
     2761 cggcatggcc agcctgtcgt tcgcgaccgc cgccatccag accggctccg ggtcggatga
     2821 ctcggcgtac acggccgcac aggccaagct cgccgattgg ctggcgcggc gcgacaccct
     2881 ggcgggcgac atcgccgcgg cgctcgaggg cgccgagttc ggcggagccg ggctcagcga
     2941 ggcccagctc aagagcctga ccaagcaggc caacgcgctg gtcgacgagg tggtcgccgc
     3001 cgcctcgtag cggcgccggc cgccgaggcc gggcaacgat cgaggaaggg cggcccgtcg
     3061 ggccgccctt ccgtaccgtc ccgggttcga tcggacccgg cagatctcgc ggcgagtccc
     3121 tcgcgcgccc ggacgacagg ccgcggagcc ctagaggtcg atggcctcgt aatgggtggc
     3181 ctcgaacgcg tcgatcagct ccggccgtcg ggtggccaag ggccggtgga tgtcgctgcc
     3241 cgtcgcgagc tcgatggcgc tccacgcggc ccacacggag acggtcacga acgcttctgc
     3301 ggtggtccct tcggcgagat agaacgccgc gggcccgtgg ccggccgcga cgtctgcggc
     3361 cacgccggcg cgcgtctcct cgacgtactg gttcagcttc ccctgacggg cacagcctcg
     3421 caggacccgg atgattcgcg gcggcgcgac ggtgcgatcg gccaggtagg cgatcctggg
     3481 cgacagcacc tccaccgtcg gctcggcgat accgtcgagc ccttcgggcc ggaactcgcc
     3541 ggggcgcggc gaaccatcga gcgcgacgtc catcgcttcg cgcgattccc agaccgacag
     3601 gaccagccgg ggcccgagct cgtcgggtcc gtgccggccg gcgaacgcgc ggaccacgcc
     3661 gcgacgggcg ctgatcgcgg gcaccatcca gtcccggatg acgttatcga aggcagggcg
     3721 ggtcggccgg aatccaaaga gccggacgac gggttcggcg gccacggtga cggtccctcg
     3781 atctcggtgg gcggcgggac tgattgtcag cgcggagccg gaagcctgca accgggcggg
     3841 cggaccagtc gacacgcgcc tgcctgcgcg cgtgctcagt tggcgtgcga gtcggcgcca
     3901 cgagcggtcg cgacctccac gagccgtcgc tcgaggtagg cccgctcgat gccgttggcc
     3961 gtcagcccca gcgcgcgacg gtaggcggtt tcggcctcgg accagcgacc aagccgccgg
     4021 agcaggtccg cgcgcgcggc gtggagatac gggtagcgct ccagctcgcc cgaggccgcg
     4081 atcccgtcca tcatcgccag gccgaccgcc ggaccctcgg ccatcgcgat cgcggccgcg
     4141 aagttcagct cgaccacggg cgacggtgtc agctgggcga gggcatcgta cagcgccgtg
     4201 atgcgggtcc agtccgtttc ctcggggctc gtggcgcggg cgtggcaggc ggcgatggcc
     4261 gcctgcaccg tgtagggacc gtacgcgccg cccagcgatt cggcacgctc gagcgccgcc
     4321 agcccgcggc ggatcaagag ctggtcccag cgggcgcgat cctgatcgag cagcagaatc
     4381 ggctcgccgc tcggggagag gcgcgcccgg aggcgtgagc tctggatctc g
//
LOCUS       DATDDI010000278         1929 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_89175, whole genome shotgun sequence.
ACCESSION   DATDDI010000278 DATDDI010000000
VERSION     DATDDI010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89175"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(224..688)
                     /locus_tag="VIU37_03960"
     CDS             complement(224..688)
                     /locus_tag="VIU37_03960"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEY6013129.1"
                     /translation="MGIEIERKFLMRDRSVLRGSDGLGYRQGYLSRDPERTVRVRVAG
                     PHAYLTVKGRASGPSRAEFEYGIPVADGEALLDLCLPSLIEKTRHRLEHAGRTWEVDV
                     FHGANEGLVVAEVELPSADALVDLPDWVGDEVTDDPRYVNANLAHHPYRSWT"
     gene            758..1348
                     /locus_tag="VIU37_03965"
     CDS             758..1348
                     /locus_tag="VIU37_03965"
                     /inference="COORDINATES: protein motif:HMM:NF025382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4232 domain-containing protein"
                     /protein_id="HEY6013130.1"
                     /translation="MPTIAHASRPRRSRSAILVLLGALLVGACANPPSPSPSPTASPS
                     ASASPSTGPSSAEASPSPTACGAADIRATGGPWGGAAGSRGSDIRIENRGSGPCLLPA
                     GPTIALVDAGGTVVLSTPTRAGEGPSVAPGGSVGFSLVFGNWCNESTALPLTFQLALA
                     GGAVDIGGLAASSADDLPPCNGPGLPPSLSATDWQP"
     gene            complement(1368..>1929)
                     /locus_tag="VIU37_03970"
     CDS             complement(1368..>1929)
                     /locus_tag="VIU37_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013131.1"
                     /translation="WGDTVVIKAGFGAAGAGRSFDLQAAADGVSWQTIATVVTDAQGN
                     ASFSYRPATNLYYRGAFAGAPDLAAVTSPPARVVVRQIALLRPTANGGTRIVSRGRKV
                     TFTTTVRPARADLPPASVTLAIYRRVGGRWAPFTTRTVYVNAAGQASYTWTFSARGEW
                     YVRSIANPTLANANSAWSPVERYSVR"
BASE COUNT          264 a          701 c          694 g          270 t
ORIGIN      
        1 ctcggcggct cgggcctgca ccgcgacccg gtcgaagagg gcatgggtgg gggtcccggc
       61 gaaggtgtag tcgtgcaggt gcaggccgaa ccagggtcgc atatcgcctc cagcgcactg
      121 tcaggtgtcc ccaagtgtgt cgcgatcggt gtgaacatgc agggacggcc ccccgcggcg
      181 cctgagcggc gtgccggtgg tcagcccggc ggaccgaaga cggtcacgtc cagctccggt
      241 aggggtgatg cgcgaggttc gcattgacgt agcgggggtc gtccgtgacc tcgtcgccga
      301 cccagtcggg gaggtcgacg agcgcgtcgg ccgacggcag ctcgacttcg gccaccacga
      361 gaccctcgtt ggcaccatgg aacacgtcga cctcccaggt ccgtccggcg tgctcgaggc
      421 gatggcgcgt cttctcgatg agcgacggca ggcacaggtc gagcagtgcc tcgccgtcgg
      481 cgacggggat cccatattcg aactcggcgc ggctcgggcc gctggcgcgg cccttgaccg
      541 tcaggtaggc gtgggggccg gcgacccgga cgcgcaccgt ccgctccgga tcccgcgaca
      601 ggtaaccctg ccggtagccg agcccgtccg atcccctgag cactgagcga tcacgcatga
      661 ggaacttgcg ctcgatctcg attcccatgg cgttcgacct catccgccgg ctcgggtacg
      721 atcgtcccga gcccggaagc gctggagacg cgtagacatg ccaacgatcg cacacgccag
      781 ccgccctcgg cgttcgcgca gcgcgatcct cgtcctgctc ggcgcgctgc tcgtcggcgc
      841 ctgcgccaat ccgccgagcc cgagccccag cccgacggcg tcgccctcgg cgagcgccag
      901 cccgtcgacc gggccgtcaa gtgccgaggc gagcccgtcg ccgacagcct gcggcgcggc
      961 cgacatccgc gcgaccggtg ggccgtgggg cggcgccgcc ggcagccgag gatcggacat
     1021 tcggatcgag aaccgcggga gcgggccatg cctgctgccg gccggtccca cgatcgcgct
     1081 cgtcgatgcc ggcgggaccg tggtcctgtc aacgcccacc agggccggcg aaggcccgtc
     1141 cgttgcgccg ggtgggtcgg tcgggttctc gctggtgttc ggcaactggt gcaacgagag
     1201 cacggctctc ccgctcacct tccagttggc gctggccggc ggcgccgtcg acatcggagg
     1261 actggccgcg agctcggccg acgacctccc gccgtgcaac gggccgggcc tgccgcccag
     1321 cctctccgcg accgactggc agccgtagcg cgactgcgcc cgggcggcta gcgaaccgag
     1381 tagcgctcga ccgggctcca cgcgctgttg gcgttcgcga gcgtcgggtt cgcgatcgag
     1441 cggacatacc actcgcccct ggcgctgaac gtccaggtgt aggacgcctg gcccgcggcg
     1501 ttgacgtaca ccgttcgagt cgtgaacggc gcccagcgcc cgcccacccg ccggtagatc
     1561 gcgagcgtca cgctggccgg cggcaggtcg gcgcgcgcgg gtcgcacggt cgtggtgaac
     1621 gtgaccttcc ggccccggct cacgatcctg gtcccgccgt tcgccgtcgg gcggagcagc
     1681 gcgatctggc ggacgaccac cctggcaggc ggactcgtga cggctgcgag gtcgggggca
     1741 cccgcaaacg cgccgcggta gtacaggttc gtcgccggcc ggtaggagaa cgatgcgttg
     1801 ccctgcgcgt ccgtcacgac cgtcgcgatc gtctgccagg agacgccatc ggccgcagcc
     1861 tggaggtcga agctgcggcc cgccccggcc gccccgaagc cggccttgat gacgaccgta
     1921 tcgccccac
//
LOCUS       DATDDI010000279         2030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_338972, whole genome shotgun sequence.
ACCESSION   DATDDI010000279 DATDDI010000000
VERSION     DATDDI010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338972"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1023
                     /locus_tag="VIU37_03975"
     CDS             <1..1023
                     /locus_tag="VIU37_03975"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013132.1"
                     /translation="DAIFAGVSNQLTAYIDRAGADVWVSQAGVRNLHMVASFVPATVT
                     AEIQAVDGVAQVTPILEATDSVAAGEERAVVYVVGLPPGATMGKPWDVVEGSAEVHPG
                     EIVVDQGFARRADLGIGDQVTILGRDARIVGMSSGTASLVNAVAFVSIDDFREARGGA
                     PIVSFVLVRTVPGAQPDAVATAIERAVSGVTAQSRAAFADQERRLVMDMSADVISIMN
                     AIGFVVGLMVVALTIYVATLSRRREFGALKAIGARNAFLYRVVLSQAVLSVLIGFAVG
                     IAFTNLLGFVVPRLGLDLALSITVASLLKVGAFAAVIAGCAAVLPIREIASLDPAVVF
                     RRGDSL"
     gene            1050..1856
                     /locus_tag="VIU37_03980"
     CDS             1050..1856
                     /locus_tag="VIU37_03980"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013133.1"
                     /translation="MSKRFGEGDTAVTAVAAVSLKVEPGEVVLIMGPSGSGKTTLLSM
                     MGALLKPTSGTIALNGTEISALSEGRLPDIRLRQFGFVFQDFNLLSAMSVLENVALVA
                     ELAGASPKQARESASRSLTALGLGERLRFLPEKLSGGEKQRVALARALINDPTVILAD
                     EPTANLDSRIGHEIMRLLRRIAKEQGRSVVIVSHDERIRDIADRVLWLEDGSFKDMVT
                     MAKDPVCGMAVEREHATSADVAGETYWFCSRGCRAEFLASAAVPADAGSG"
BASE COUNT          307 a          656 c          725 g          342 t
ORIGIN      
        1 gatgcgatct tcgccggcgt ctcgaaccag ctgacggcct acatcgaccg ggctggcgcc
       61 gacgtgtggg tgagccaggc cggcgttcgg aacctgcaca tggtcgcgtc cttcgttccc
      121 gcgacggtga ccgcagagat ccaggcggtg gatggggtcg cccaggtgac gccgatcctg
      181 gaagcgaccg atagcgtcgc tgcaggcgag gagcgggccg tcgtctacgt ggttgggctg
      241 ccgcccggcg cgacgatggg caaaccgtgg gacgtcgtcg aaggatcggc ggaggtccat
      301 ccgggcgaga tcgtcgtcga ccaggggttc gctcgcaggg ctgacctcgg gatcggcgac
      361 caggtgacga tcctcggcag ggacgcccgg atcgtcggca tgtcatccgg gacggcaagc
      421 ctcgtcaacg ccgtcgcgtt cgtctcgatt gacgatttcc gggaggcacg cggaggcgct
      481 ccgatcgtca gtttcgtgct cgtccggacg gtgccgggcg cgcaacccga tgctgtcgct
      541 acggcgatcg agcgcgccgt cagcggggtc acggcccagt cacgcgccgc cttcgcggac
      601 caggagcgcc ggctggtcat ggacatgagc gccgatgtca tctcgatcat gaacgcgatc
      661 gggttcgtcg tcggactcat ggtggtggcc ctgaccatct acgtcgccac gctgtcacgg
      721 cgtcgcgagt tcggcgcact caaggcgatc ggggctcgga acgcgtttct ttaccgggtg
      781 gttctcagcc aggcggtcct gagcgtcctg atcgggttcg ccgttggcat cgccttcacg
      841 aacttgctcg gcttcgtggt gccgcgcctg gggctggatc tcgccctgtc catcaccgtc
      901 gcctcgctgc tcaaggtggg cgccttcgcg gccgtcatcg ccggatgcgc agccgtactg
      961 ccgatacgcg agatcgcgag cctcgacccc gccgtcgtgt ttcggagagg agactcgttg
     1021 tgaccgccgt cagcctcgat gttcgaaacg tgagcaagcg gttcggggag ggcgatacgg
     1081 cggtgaccgc ggtggcggcg gtcagcctga aggttgaacc cggcgaagtc gtgctcatca
     1141 tgggcccgtc gggctccggc aagacgacac tcctctcgat gatgggcgcg ctgctgaagc
     1201 cgacgagcgg caccatcgct ctcaacggga ccgagatcag cgctctctcc gagggtcgcc
     1261 tgcccgacat acggctccgc cagttcgggt tcgtcttcca ggacttcaac ctgctctcag
     1321 cgatgtcggt cctcgagaac gtggccctcg tcgccgagct cgcaggcgca tcgccgaagc
     1381 aggcgcgcga gtcggcgtcg aggtcgctga cggcgcttgg cctcggtgag cggctgcgct
     1441 tcctgccgga gaagctgtcc ggcggcgaga agcagcgggt tgcactggcc cgggcgctca
     1501 tcaacgaccc gacggtcatc ctggccgatg agccgaccgc caacctcgac tcgaggatcg
     1561 gccacgagat catgcggctg ctccggcgga tcgcgaagga gcagggccga agcgtggtca
     1621 tcgtcagcca cgacgagcgg atccgcgaca tcgccgaccg ggtcctgtgg ctcgaggatg
     1681 gcagcttcaa ggacatggtg acgatggcga aggatcccgt ctgcggcatg gcggtcgagc
     1741 gcgaacacgc gacgagcgcc gatgtggctg gcgagacgta ctggttctgc tcacgaggct
     1801 gtcgcgcgga gttcctcgct tcagcggcgg tccccgccga tgccggatcg gggtaggatc
     1861 aggcgtggag cacgaaggcc accaccagtc gacggagtcg ggggccatgg gcgaggcgac
     1921 catggcgtcc gcccatgcgg cgcatgccgg ccccgccggt atggacgctg cccacggcgc
     1981 cgggcatgac cgtcacgagg gccattccgt cgcgatgttc cgcgacaggt
//
LOCUS       DATDDI010000280         1766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_214132, whole genome shotgun sequence.
ACCESSION   DATDDI010000280 DATDDI010000000
VERSION     DATDDI010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214132"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..1051
                     /locus_tag="VIU37_03985"
     CDS             104..1051
                     /locus_tag="VIU37_03985"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013134.1"
                     /translation="MTSTRRGGRGPGELTYRPARPDELGACADIWRVSINDYIVPLGQ
                     HEIPPDSNQVTRLFTHLQSTDPERFVVATSPDADADADADAGRIVAFTAAVERERLWY
                     LSMLFVLPELQGLGVGRELLARVLPTDDEMARSTATDSAQPISNALYASYGIVPRMPL
                     LNLVGLPERPDAFGSLPSGITPVSFDTIAGRPAGSGGPGGGGHDGLNRLIEGLDRDVV
                     GVAHPQDHRFLRAEARHGWLGPVAARDPDLLAPILGHLTSAVIPRGASAIWVGGEADR
                     ALVALLRAGFRLESFPVLLCWDRPYADFSRYLPSSPGLL"
     gene            1257..>1766
                     /locus_tag="VIU37_03990"
     CDS             1257..>1766
                     /locus_tag="VIU37_03990"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013135.1"
                     /translation="MTIAPAPRQVRSIRSRVLGRNRDQAKPERPVLVLHDVTKQYPNG
                     KLALREVDLVIPEGDFVFLVGPSGAGKSTLIKLLIRDELPTRGEVVLDGQDLAHLPRR
                     QVPRMRRKIGIIFQDFKLLPTKTVWENVAFALEVTGTSRSLIRPAVDRVLALVGLTDQ
                     AQQVPSQLSG"
BASE COUNT          242 a          683 c          586 g          255 t
ORIGIN      
        1 cgaacgtcga gacgggcaac acggcggcgg tcctcgacgg cgacctcgac gcgttcatgc
       61 aggcggagct cgagcgagtc atcggcgacg aaccggtcgc ctcgtgacct cgacgaggcg
      121 cggcggccgc ggacccggcg agctgacgta tcgaccggca cggccggacg agctcggggc
      181 ctgcgccgac atctggcgcg tctcgatcaa cgactacatc gtgccgctcg gccagcacga
      241 gatcccgccc gattcgaacc aggtgacccg gctcttcacg cacctgcagt cgaccgatcc
      301 ggaacgcttc gtggtggcca cgtcgcccga cgccgacgcc gacgccgacg ccgacgccgg
      361 acggatcgtc gccttcaccg cggcagtcga gcgcgaacgg ctctggtacc tgtccatgct
      421 gttcgtgctc ccggagctcc agggcctcgg agtgggtcgc gagctgctgg cccgcgtcct
      481 gcccacggac gacgagatgg cccgatcgac cgcgaccgac agcgcccagc cgatctcgaa
      541 cgccctgtac gcctcgtacg ggatcgtgcc gcggatgcca ctgctcaatc tcgtcggtct
      601 gcccgagcgt ccggacgcct tcgggtcgtt gccgtcgggg atcaccccgg tcagcttcga
      661 cacgatcgcc ggccggcccg ccgggagtgg gggaccggga ggaggcggcc acgacgggct
      721 caaccgcctc atcgagggcc tcgaccgcga cgtggtcggg gtcgcccatc cccaggatca
      781 tcggttcctg cgggccgagg cccgccacgg ctggctcggg ccggtcgcgg cgcgcgaccc
      841 cgacctcctc gcgccgatcc tcggccacct gacctccgcc gtcatcccgc gcggcgcctc
      901 cgcgatctgg gtcggcggtg aggccgaccg cgcgctggtc gcgctgcttc gggccggctt
      961 ccggctcgaa tccttccccg tcctgctctg ctgggaccgc ccctacgccg acttctcccg
     1021 ctacctcccg agctcgccgg gcttgctgta acgggcggac cgcgttcgcc gcggcgcgcc
     1081 gtcccgggcc cagactgcgt tcgccacggc cggccgcggc agccctgttt gccgctccaa
     1141 gggggcggtg gtaggttacg tcggacgtgg ctccccctgc cgtgcccgcg gacggagtcc
     1201 aaccgaactc gccagacggc gggccgttca ggccagtttc gaccgcggag ccaaacgtga
     1261 ccatcgcccc cgccccgcgc caggtgcgct cgatccgcag ccgcgtgctc ggccgcaacc
     1321 gcgaccaggc caagcccgag cgaccggtcc tcgtcctcca cgacgtcacc aagcagtacc
     1381 ccaatgggaa gctcgcgctg cgcgaggtcg acctggtcat ccccgagggc gacttcgtct
     1441 tcctggtggg gccctccggt gccggcaagt ccacgctgat caagctgctc atccgcgacg
     1501 agctgccgac acgcggcgag gtcgtcctcg acggccagga cctggcacac ctgccacgcc
     1561 gccaggtgcc ccggatgcgg cgcaagatcg ggatcatctt ccaggacttc aagctgctgc
     1621 cgaccaagac ggtctgggag aacgtcgcgt tcgcgctcga ggtcaccgga acctcacgga
     1681 gtctcatccg gccggccgtc gaccgggtcc tcgccctcgt cggcctgacc gatcaggcgc
     1741 agcaggtccc gtcgcagctg tccggc
//
LOCUS       DATDDI010000281         1869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_276545, whole genome shotgun sequence.
ACCESSION   DATDDI010000281 DATDDI010000000
VERSION     DATDDI010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276545"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..549)
                     /locus_tag="VIU37_03995"
     CDS             complement(<1..549)
                     /locus_tag="VIU37_03995"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEY6013136.1"
                     /translation="MTGRTLRVGAIQLESRLGEVEANLHHAEQLVTRAAAEGAALVVL
                     PELFSTGYLPNRDLWGHVEQPTGPTARWLGTLAHRFEIHLGGGFAAWQGDDVVDVFAL
                     AGPDGSIVGTARKSNAEAGVFRRGHGAHVIGTSIGRIGVAICADCQSPRILRLLHDRS
                     VDLVVMPHASPTPAVARGAVSQK"
     gene            complement(568..>1869)
                     /locus_tag="VIU37_04000"
     CDS             complement(568..>1869)
                     /locus_tag="VIU37_04000"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6013137.1"
                     /translation="AFEIGRLSAVGPTVDGIRLDNTFGILALVLGRGLHGLLVVVPLV
                     LGAKIGRAVATRLTSSEPSSPFTRRRWMTGDGVLLGFESILTVGLAGLVAWPATTPPI
                     LGDDGKPVAGSIAELATVRLGGEDQVVMIRGASPDKPVLLYLSGGPGQSDLALARVLS
                     SGWTKDFVVADWDQRGNGKSYAAFEPAATMTLDQAVSDTIELTEYLRTRFAEQKVYLM
                     GESWGTILGVLAAQRRPDLYYAWLGSGQMVSLVETDRRIYHDLVAYATRTGDSGLLAK
                     LQEMGEPPYRDLPWSNASVMLWYDYLYADYTPSDGYRARGESSGLDPFGVLGSEYNLI
                     EKANVLRGLIDTFAVLYPQLYGIDFRRDVPSLEVPVYILDGAAELNGRRDLALEWFDG
                     LQAPVKQRVTFPGAAHSVAFEQADAVQQLLDETIVPATYGR"
BASE COUNT          295 a          646 c          666 g          262 t
ORIGIN      
        1 cttctggctg accgcgccac gcgccaccgc cggcgtgggc gatgcgtggg gcatgaccac
       61 gaggtcgacc gaacgatcgt gcaggagccg caggatccgc ggcgactggc agtcggcgca
      121 gatcgcgacg ccgatccgac cgatcgaggt cccgatcacg tgcgcaccgt gaccgcgccg
      181 gaacacaccg gcctccgcgt tcgacttccg ggccgtcccc acgatgctgc cgtccgggcc
      241 ggccagggcg aacacgtcga ccacgtcgtc accctgccag gcggcgaacc caccgcccag
      301 gtggatctcg aaccggtggg ccagggtgcc cagccagcgg gccgtcggtc cggtgggctg
      361 ctcgacgtga ccccacaggt cgcggttcgg caggtagccc gtgctgaaca gctcgggcag
      421 gacgaccagt gccgccccct cggccgcggc gcgggtcacg agctgctccg cgtgatggag
      481 gttcgcctcg acctcgccga gccgggactc gagctggatc gcccccacgc gaagggttcg
      541 gccggtcacg gcgtcaccgg gggctcgtca tctgccgtag gtcgccggga cgatggtctc
      601 gtcgagcagt tgctggaccg cgtcggcctg ttcgaaggcg accgaatggg ccgcacccgg
      661 gaacgtgacc cgttgcttga ccggcgcctg gaggccgtcg aaccactcga gcgcgagatc
      721 gcgccggccg ttgagctcgg ccgcgccgtc gaggatgtag acggggacct cgagggacgg
      781 cacgtcgcgc cggaagtcga tgccgtagag ctgcggatag aggaccgcga acgtgtcgat
      841 cagtccccgc aggacgttcg ccttttcgat caggttgtac tcggagccca ggacgccgaa
      901 cggatcgagc ccgctcgatt caccccgagc acggtatccg tccgacggcg tgtagtcggc
      961 gtacaggtag tcgtaccaga gcatcacgct ggcgttggac cagggcaggt cgcgataggg
     1021 cggctcgccc atctcctgca gcttggcgag caagccggaa tcgccggttc gggtggcata
     1081 ggcgaccagg tcgtgataga tgcgccggtc ggtctcgacg aggctgacca tctggccgct
     1141 ccccagccac gcgtagtaga gatcgggccg gcgctgggcg gcaaggacgc cgaggatcgt
     1201 gccccacgat tcgcccatca ggtagacctt ctgctcggcg aaccgggtcc gcaggtactc
     1261 ggtcagctcg atcgtgtcgg acacggcctg gtcgagggtc atcgtcgcgg cgggctcgaa
     1321 ggccgcatac gacttcccgt tcccgcgctg atcccagtcc gcgaccacga agtccttcgt
     1381 ccagccggat gacaggaccc gtgccagcgc caggtcggac tggcccggcc cacccgacag
     1441 gtagagcagg acgggcttgt cggggctcgc gccgcggatc atcacgacct ggtcctcgcc
     1501 gccgaggcga accgtggcga gctcggcgat gctgcccgcg accggcttgc cgtcgtcgcc
     1561 gaggatcggt ggcgtggtcg cgggccaggc gacgaggcct gcgagtccca cggtcaggat
     1621 cgactcgaac ccgagcagga cgccgtcgcc ggtcatccag cgacgccggg tgaacgggct
     1681 ggacggctcg gacgaggtca ggcgagtcgc caccgcccgt ccgatcttgg ccccgagcac
     1741 gagcgggacg acgaccagca agccgtgcag gccgcgaccc agcaccaggg cgaggatccc
     1801 gaaggtgttg tcgagccgga tcccatcgac cgtcgggccg acggcgctca ggcgaccgat
     1861 ctcgaaggc
//
LOCUS       DATDDI010000282         2031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_442902, whole genome shotgun sequence.
ACCESSION   DATDDI010000282 DATDDI010000000
VERSION     DATDDI010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442902"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VIU37_04005"
     CDS             complement(<1..380)
                     /locus_tag="VIU37_04005"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013138.1"
                     /translation="MPDPATGRAPSAPRRAPSPLEAALERVGDRWSLLLVEALLDGPR
                     RFNALAEALPSIAPNILADRLRRLEGERIVVATPYQQRPPRMSYSLAAEGRELASALR
                     LLADWGARRSDSAEPFHHDACGTSL"
     gene            514..1410
                     /locus_tag="VIU37_04010"
     CDS             514..1410
                     /locus_tag="VIU37_04010"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY6013139.1"
                     /translation="MSVIEELQAAVASVAERVGPSIVGIGRGTRGSGVVIGAGKVLTN
                     AHNLRGDEVTVSFADGRRVRGAVAGYDGDGDLAVIDVDTAGATPLDWGDGAGLSVGTA
                     VFGAGASHDGGTRVTFGLVSAVAREFRGPGGRRIAGSVEHTAPLAPGSSGGALVDATG
                     HLVGLNTNRIGDGFYLALPADERLRARVDGLARGESPKRTRLGVAVAPSHVAQRLRRS
                     VGLPERDGVLVRGVEDGGLAAAAGIEAGDLIVEAGGRPIAGADDLLTALDALEAPFEV
                     KVVRGADERTVQVGEPATAGNA"
     gene            1460..>2031
                     /locus_tag="VIU37_04015"
     CDS             1460..>2031
                     /locus_tag="VIU37_04015"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEY6013140.1"
                     /translation="MRGQPVQRVVFDERFHRLVPAATRVEHLAGGAAWAEGPVYLPDQ
                     DAVIWSDVRGDRVHRWTAAGGDTTLYSPGDFANGHTLDRDGHVLACEHGRRRIARYEA
                     DGTRTTVVDRYEGRRLNSPNDLVVASGGAVWFTDPPYGILDDSEGHAAKSELGGCFVF
                     RLDRDTGELAIASDAMVHPNGLAFSPDESVL"
BASE COUNT          269 a          718 c          777 g          267 t
ORIGIN      
        1 agcgacgtcc cgcatgcgtc gtggtggaag ggctcggccg agtccgagcg gcgcgccccc
       61 cagtcggcca gcagccgcag cgccgacgcg agctcgcgac cctcggcggc cagcgagtag
      121 gacatccgcg gtgggcgttg ctggtacggc gtcgccacga cgatccgctc gccctcgagc
      181 cgccggaggc ggtcggcgag gatgttcggc gcgatggacg gaagcgcctc ggccagcgcg
      241 ttgaagcgcc gcgggccgtc gagcagcgcc tccacgagga gcaggctcca gcggtcaccg
      301 acgcgctcga gcgcggcctc gagcggcgac ggggcgcgcc gcggcgctga cggggctcgg
      361 ccggtcgccg ggtctggcat gggcgcgatg gtaggggcgc ggtgcaggct tgtcacgatc
      421 ggggggcttg tcatcgttgc gagtcagttg tagattgcaa gtcacaagtc tatctccagt
      481 ggacacgtca cccgaaacgg agcaacacat cccatgagcg tcatcgaaga actccaggcg
      541 gccgtcgcct ccgttgccga gcgcgtcggc ccgtccatcg tcgggatcgg ccgcggcacg
      601 cgcggctcgg gcgtcgtgat cggcgcgggc aaggtcctga ccaacgccca caacctgcgc
      661 ggcgacgagg tgaccgtctc gttcgcggac ggccggcggg tccgcggcgc cgtggccggc
      721 tacgacggcg acggcgatct cgcggtcatc gacgtcgaca cggccggcgc gaccccgctg
      781 gactggggag acggcgcggg cctgagcgtc ggaacggcgg tgttcggcgc cggggccagc
      841 catgacggcg gcacccgggt cacgttcggg ctcgtctcgg cggtcgctcg cgagttccgg
      901 ggacccggcg gacggcggat cgccggcagc gtcgagcaca ccgcgcccct cgcgcccgga
      961 tcgtcgggcg gggcgctggt ggacgcgacc gggcacctgg tcggcctcaa caccaaccgg
     1021 atcggtgacg ggttctacct ggccctcccg gccgacgagc ggctgcgcgc acgggtcgac
     1081 ggccttgcga ggggtgagtc gccgaagcgg acccggctcg gcgtggcggt cgcgccgtcg
     1141 cacgtcgcgc agcgcctgcg ccgttcggtc ggtctgcccg agcgtgacgg cgtgctcgtc
     1201 cgcggcgtcg aggacggagg tctggccgcc gccgccggga tcgaggcggg cgatctcatc
     1261 gtcgaagcgg gcggtcgccc gatcgccgga gccgacgacc tcctgacggc gctcgatgcg
     1321 ctcgaggcgc cgttcgaggt gaaggtggtc cgaggcgccg acgagcggac ggtccaggtc
     1381 ggcgagcccg cgaccgccgg gaacgcctga tcgacgggtc cgcccgggcg cactgacgac
     1441 cgggtagcat cggctggcca tgcgaggtca gccggtccag cgggtggtgt tcgacgagcg
     1501 gttccaccgg ctcgtgcctg ccgcgacgcg cgtcgagcac ctggccggtg gcgcggcctg
     1561 ggccgaaggc ccggtctacc ttccggacca ggatgccgtg atctggagcg acgtccgcgg
     1621 cgaccgggtc caccgctgga ccgcggccgg tggcgatacg accctgtact cgccggggga
     1681 cttcgccaac ggccacacgc tcgatcgcga cggtcacgtc ctggcctgcg agcacggccg
     1741 acggcggatc gcgcggtacg aggccgacgg cactcggacc acggtggtgg accgctacga
     1801 gggccgccgg ctcaactccc ccaacgacct cgtcgtcgcg tccggcggcg ccgtctggtt
     1861 caccgacccg ccctacggga tcctcgacga cagcgaaggt cacgcggcca aatccgagct
     1921 cggcggctgc tttgtcttcc ggctggaccg cgacaccggc gagctggcga tcgcgagcga
     1981 cgcgatggtg cacccgaacg gcctggcctt ctcgccggac gaatccgtcc t
//
LOCUS       DATDDI010000283         1740 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_6244, whole genome shotgun sequence.
ACCESSION   DATDDI010000283 DATDDI010000000
VERSION     DATDDI010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6244"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(310..1674)
                     /locus_tag="VIU37_04020"
     CDS             complement(310..1674)
                     /locus_tag="VIU37_04020"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013141.1"
                     /translation="MDRGNVIAVARREYVARGSTRTFKWSTILLVLAGLGVTLAPVIL
                     RAVFGEGQQTRIEVFVGDSHPSVDVAAQVRGVLNAPLLPGGTGSGNGSGGNGDSRPQY
                     LVEAITDETASRARVLAGDVAGLLVVDRPTADGDLTFAYVTKQTTLDRIAPTVRQVAS
                     SVAIQDRLAGSGIPPAEQAKLFAEPKWSVEPADPNAPPSVNPDDLTSGFAIGFVLAIA
                     LFMAIILYGQWVAYSVVEEKSSRVMEVILGAATPFELLAGKVVGVGALALTQYIVVFV
                     PAVIALLFQGQIAALIFGGSGDGAAGLAGTLTSGLSIPLLVAFGVFFVLGFALYAALY
                     AGAAALVSRTEDINQIVAPMTIVATAGYLVAVYSSTGLLDPNSTFVMAMAYIPFFSPY
                     LMLSRFGLGVAGPVEVLVAIALLLVTIPIAIWLAARFYAAGVLMYGQRPSLRLMLRVL
                     RGTR"
BASE COUNT          270 a          600 c          649 g          221 t
ORIGIN      
        1 gccggcggat gcgtgccttc ctgcggcacc cggacggagt gcctgccggc ggtcgatccg
       61 tggtcgacac gatcgccggg gtcatcttct ggccgaacaa acaccccggg ttcgttagga
      121 aggctcggcc tggcgcgagg cgggttcgac gggccagttc gtgctcaacc cggttgtgct
      181 gagcgcctcg caggctcgct cgagctggct aacgatccct gcgggttagt gcggcgaaaa
      241 gacgccggcg gcggcgcgac cggctcgcga gcgggcgcgc cgggacgcaa cggcgcgggc
      301 ggcagggctt cagcgcgtgc cgcggaggac gcggagcatg aggcggaggc tggggcgctg
      361 gccgtacatc aggacgccgg cggcgtagaa gcgggcggcg agccagatgg cgatcgggat
      421 ggtgacgagg aggagggcga tcgccacgag cacctcgacg ggccctgcga caccgaggcc
      481 gaacctggag agcatgaggt atgggctgaa gaacgggatg taggccatcg ccatgacgaa
      541 ggtcgagttc gggtcgagga ggccggtgct cgagtagacc gcgaccaggt agccggccgt
      601 cgccacgatc gtcatcgggg cgacgatctg gttgatgtcc tcggtgcggc tgacgagggc
      661 ggcggccccc gcgtacagcg ccgcgtagag cgcgaacccg aggacgaaga acaccccgaa
      721 cgccacgagc agcgggatcg acagcccgct cgtcagggtg ccggcgaggc cggccgcgcc
      781 gtcaccggac ccgccgaaga tcagcgccgc gatctgcccc tggaacagca gggcgatcac
      841 cgccggcacg aacaccacga tgtactgggt gagcgccagc gccccgaccc ccaccacctt
      901 gccggccagc agctcgaacg gggtcgcggc gccgaggatg acctccatca cgcggctgct
      961 cttctcctcg accacgctgt aggcgaccca ctggccgtac aggatgatcg ccatgaacag
     1021 ggcgatcgcc agcacgaacc cgatcgcgaa gccgctcgtc aggtcgtccg ggttcacgct
     1081 gggcggggcg ttcgggtcgg cgggctccac ggaccacttg ggctcggcga agagcttcgc
     1141 ctgttcggcc ggggggatgc cggagccggc cagacgatcc tggatcgcga ccgagctcgc
     1201 gacctggcgc accgtcgggg cgatgcggtc gagcgtggtc tgcttggtga cgtaggcgaa
     1261 ggtcaggtcg ccgtcggcgg tcggtcgatc gacgacgagg aggccggcga cgtcgcccgc
     1321 gaggacccgg gcgcgcgacg ccgtctcgtc ggtgatggcc tcgacgaggt actgcggccg
     1381 gctgtcgccg ttcccgccgg agccgttccc ggagcccgtg ccgccgggca gcagcggcgc
     1441 attgagcacg ccacggacct gcgccgcgac gtcgacgctc gggtgggaat cgccgacgaa
     1501 gacctcgatc cgcgtctgct ggccctcgcc gaagaccgcc cgaaggatga ccggcgccag
     1561 cgtgacgccg agccccgcta gcaccagcag gatcgtcgac cacttgaagg ttcgcgtgct
     1621 gccgcgcgcg acgtactcgc gccgcgcgac ggcgatgacg ttgccgcgat ccatcctcac
     1681 agcgacgccc ccgtgccggc gcccgccccc gtgccggcgc ccgcccccgt gccggtcccc
//
LOCUS       DATDDI010000284         1947 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_505607, whole genome shotgun sequence.
ACCESSION   DATDDI010000284 DATDDI010000000
VERSION     DATDDI010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505607"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1236
                     /locus_tag="VIU37_04025"
     CDS             199..1236
                     /locus_tag="VIU37_04025"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6013142.1"
                     /translation="MTSTTTAPRPGARRQSTIARIAEAAGVSAPTVSKVINGRSDVSP
                     ETRQRVEAVIREHGYERSRKSVRPAPLLEVIFHELESDWALEIIMGVEQVAREHDMAV
                     VLSEMQGRRTPGRSWIEGVLARRPTGVIAVLSDLSEGQRALLNSRGISLVVVDPTGEP
                     LHDTPSIGATNWSGGLAATRHLLGLGHRRIGVVAGPESVLCSRARLDGYRAAMDEAEV
                     PIDPGLIRFGNFHVADGVTEGRALLRLPDRPTAIFAGNDLQALGVYQAAREARLHIPE
                     DLSVIGFDDLPVATWVSPPLTTIRQPLVQMAVAGARLALRLANGEHPSQTRVELATEL
                     IVRESTAPPRG"
     gene            1322..>1947
                     /locus_tag="VIU37_04030"
     CDS             1322..>1947
                     /locus_tag="VIU37_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013143.1"
                     /translation="MPAPIEDEDLVPLRLQPVVDRPRGWRGRSGTVVAVVLVAFVVAA
                     LVLGRALDMGPTPPRIAAVATEPAAATTATTSPAPVPSLEPAVSPLPAREVIGGRIPD
                     ERRLVSANGVQVLDLATGTLQATTRPLYDHMLPVGDDQLVCACSLSGIPIGETPVPPT
                     VRFGRYDLTGKVLVQRDLLSLVGVVPVPDITSGFNLTSTVSADRSTLYV"
BASE COUNT          278 a          723 c          671 g          275 t
ORIGIN      
        1 tccacgggat ccgcatcgac ttcgctcttt gccgaaagtt tcgctcggac gagcgatcgc
       61 tttcgagaat cggactctac gcatcattcc cgacgccgtc aagacacgaa gccggccccg
      121 agccgcaacg cactcggcgc catgcgaggt cgacgaaatc cctgcaacgg gcctcgaaag
      181 tttcgataca ctgcccgcat gacgtcgacc acgaccgcac cgcgccccgg cgctcgccgc
      241 cagtcgacga tcgcccggat cgccgaggcc gcgggggtct cggcgcccac cgtgtcgaag
      301 gtgatcaacg gccgatccga cgtctcgccc gagaccaggc agcgcgtcga ggcggtcatc
      361 cgggaacacg gctacgagcg ctcccgcaag tcggtccggc cggctcccct gctcgaggtg
      421 atcttccacg agctcgagag cgactgggcg ctcgagatca tcatgggcgt cgagcaggtc
      481 gcccgcgaac acgacatggc cgtcgtcctg tccgagatgc aggggcgccg cacgccgggt
      541 cgaagctgga tcgagggcgt cctcgcgcgc cgaccgaccg gcgtgatcgc cgtcctgtcc
      601 gacctgagtg aaggccagcg ggcgctgctc aactcgcggg gcatctcgct cgtcgtcgtg
      661 gatccgaccg gcgagccgct ccacgacact ccgtcgatcg gcgccacgaa ctggagcggc
      721 gggctcgcag cgacccggca cctgctcggc ctcggccacc ggcggatcgg ggtcgtggcc
      781 gggccggaga gcgtcctgtg cagccgggcc cggctcgacg gttatcgagc ggcgatggac
      841 gaggcggagg taccgatcga ccccggcctc atccgcttcg gcaacttcca cgtggctgac
      901 ggcgtgacgg agggccgggc gctccttcgc ctgcccgacc ggccgaccgc gatcttcgcc
      961 ggcaacgacc tccaggcgct cggcgtctac caggcggccc gcgaggcccg cctgcacatt
     1021 cccgaggatc tcagcgtgat cggcttcgac gacctgccgg tcgccacgtg ggtgagcccg
     1081 ccgctgacca cgatccgcca gccgctcgtc cagatggccg tcgccggcgc ccggctcgcc
     1141 ctgcgactgg ccaacggcga gcatccgtcg cagacacgcg tggaactggc gaccgagctc
     1201 atcgtccggg agagcaccgc gccgccgcgg ggatgagcca ccggtccgcg gccgtcggcc
     1261 cgagaccgcc ggtccgctgt ccggcaggtc ggccgttcgc ctgcgtggtg taatcgacgc
     1321 gatgccggcc ccgatcgagg acgaggacct cgtcccgctc cgactgcagc ccgtggtgga
     1381 tcgtccccgc ggctggcggg gacgatcggg cacggtggtc gcggtcgtcc tcgtcgcgtt
     1441 cgtcgtggcc gcgctcgtcc tgggacgggc cctggatatg ggcccgacgc cgccccggat
     1501 cgcggccgtc gcgacggaac cggcagcggc gacgacggca acgacgagcc cggcgccggt
     1561 gccgtccctc gaaccggcgg tgagtcccct gcccgcccgc gaggtcatcg gtggccggat
     1621 cccggacgag cgccggctcg tgagcgcgaa tggcgtgcag gtgctcgacc tcgcgaccgg
     1681 cacgctccag gcgacgaccc gccccctgta cgaccacatg ctgccggtcg gcgacgacca
     1741 gctcgtgtgt gcctgttcgc tgagcgggat cccgatcggc gagaccccgg tgccgccgac
     1801 cgtgcgcttc gggcgctacg acctgaccgg gaaggtcctg gtgcagcggg acctgctgtc
     1861 gctcgtgggg gtcgttccgg tcccggacat caccagcggg ttcaatctga ccagcaccgt
     1921 gagcgccgac cgaagcaccc tctacgt
//
LOCUS       DATDDI010000285         3055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_151843, whole genome shotgun sequence.
ACCESSION   DATDDI010000285 DATDDI010000000
VERSION     DATDDI010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3055
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151843"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VIU37_04035"
     CDS             <1..531
                     /locus_tag="VIU37_04035"
                     /inference="COORDINATES: protein motif:HMM:NF024490.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013144.1"
                     /translation="RIVLKLNAIVDVAVIEALYRASNAGVEIDLVVRGACSLQPGLRG
                     ISERIRVRSIIGEFLEHSRIWSFDNGGDREWYIGSADLMDRNLDRRVEAVTPVEDLEA
                     QARLATIVDVMLADDRRSWQLQPDARWVRTEVLQGRAGAVDTFETLKEDALDRSQVSV
                     VPHRPGAGAGSLDPRA"
     gene            528..2288
                     /locus_tag="VIU37_04040"
     CDS             528..2288
                     /locus_tag="VIU37_04040"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEY6013145.1"
                     /translation="MSPATGRPVEVELKFRVVDLAAAERYLVADSIGAFVAGGAARAT
                     QLEDRYVDTAAGALTQAGFAVRLRQSGRGTIVSVKSLARTNGAGGSVRREELEGPADR
                     TAGPIEWPASDARSLVLELAGDAPLVELVTIRQLRRKRILRDGDTRVELSLDEVDVVV
                     RSRVVDRFVELEVELVKGDESRLTELAAVFAADRALTSEQGSKLESAMAAVRAADGPH
                     VHPSLPSPVREAADTAAAQLPTSPAPSTPAPHAEIVPSSSDELDETAEPAPTPDTHLA
                     VGKTPGVAADDHVAEAARKVMRFHLARMLAREAGVRTGHDLEDVHAMRVATRRQRAAW
                     RVFGAAFRDRRTKRYRKGLREIAARLGAVRDLDVLIEAADHYRADLPVAEQRALEPLI
                     TDWRTRRDDARILLVRELDSDGYRRWVDDYRDFVQTEGAAVRPVGPVEPHRVRDTTAS
                     RVWTAYEHVRGYEAVLRWADVETLHELRIAGKWLRYTLEFVREALGDDAAPLIARVTA
                     LQDHLGLMNDADVAASMARTFLVDHAGELSQLENGAIGRYLVSREREVARLRRGVGPA
                     WRGVAGIGFRRTLGRVVARI"
     gene            complement(2351..>3055)
                     /locus_tag="VIU37_04045"
     CDS             complement(2351..>3055)
                     /locus_tag="VIU37_04045"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013146.1"
                     /translation="VGTEPIRRAADAARIAAEVAATAGVPLHVLSHEEEAYATLIGVT
                     EGRPVTRETLVVDVGGGSSEFCVVDASRPPRAVGIRLGSARLTDRFVVEDPPIPAEVA
                     AMRATARDAVEDALEASPADVVAVGGTASNLLKVLLAGEGDRTLTRDGIAEALAILGA
                     LPSASAAERYRVRPTRARILPAGAVILDAILERYGVASLRVSEAGIREGTILAVDHAG
                     VAWRDRLPQLAHGWRS"
BASE COUNT          408 a         1094 c         1160 g          393 t
ORIGIN      
        1 cggatcgtcc tgaagctcaa tgccatcgtc gacgtggcgg tgatcgaggc gctctaccgg
       61 gcatcgaatg ccggcgtcga gatcgacctg gtcgttcgtg gcgcgtgctc gctccagccc
      121 gggctgcgcg gcatctccga gcggatccgg gtgcgctcga tcatcggcga attcctcgag
      181 cattcgcgga tctggagctt cgacaacggc ggcgatcgcg agtggtacat cggctcggcc
      241 gacctgatgg accgcaacct cgaccggcgg gtggaggcgg tcacgccggt ggaggacctc
      301 gaggcacagg cgcggctggc cacgatcgtc gacgtgatgc tcgccgacga tcgccgctcg
      361 tggcagctcc agcccgacgc gcgctgggtg cggacagagg tcctgcaggg tagggccggc
      421 gccgtcgaca cattcgagac gctcaaggag gacgcgctcg accgctcgca ggtcagcgtc
      481 gtcccgcatc gtcccggcgc cggagcgggc tcgctggacc cgcgcgcatg agcccggcca
      541 cgggccggcc ggtggaggtc gagctcaagt tccgggtcgt cgacctggcc gccgccgagc
      601 gctacctggt cgcggattcg atcggggcgt tcgtcgcggg cggcgcggcg cgcgcgacgc
      661 agctcgagga ccgctacgtc gacacggcgg cgggcgcgct gacccaggcc gggttcgccg
      721 ttcgcctccg ccagtcgggc cgcgggacga tcgtctcggt caagtcgctg gcgaggacga
      781 acggggccgg cgggtccgtt cgtcgcgagg agctggaggg gcccgcggac cgcaccgccg
      841 gcccgatcga gtggcccgcc tcggacgccc gctcgctggt gctggagctg gccggcgacg
      901 cgccgctcgt cgagctcgtc acgatccggc agctgcgccg caagcggatc ctgcgcgacg
      961 gcgacacccg ggtggagctg agcctggacg aggtcgacgt ggtcgtgcgg tcgcgcgtcg
     1021 tcgaccgctt cgtggagctc gaggtcgagc tcgtcaaggg tgacgagagc cggctcacgg
     1081 agctggccgc ggtgttcgcc gcggaccggg cgctgacgtc tgagcagggc agcaagctgg
     1141 agtcggcgat ggcggccgtc cgcgccgccg acggcccgca cgtgcacccg tcgctccctt
     1201 cccccgtgcg ggaagcggcg gacacggcgg cggcgcagct ccccacgtcc cccgcgccgt
     1261 cgactccggc gccacacgcc gagatcgtcc cgtcctcgtc cgacgagctc gacgagacgg
     1321 ccgagcccgc gccgacaccc gacacgcacc tcgcggtcgg caagacgccg ggggtcgccg
     1381 ccgacgatca cgtggccgaa gccgcccgca aggtcatgcg cttccacctc gcgcgcatgc
     1441 tcgcccgcga ggccggagtg cgaaccggcc acgacctcga ggacgtgcac gccatgcggg
     1501 tggccacccg ccggcagcgg gcggcctggc gggtgttcgg cgcggcattc cgggaccggc
     1561 gcacgaagcg ctatcgcaag gggctccgcg agatcgccgc ccggctgggt gccgtgcgcg
     1621 acctggacgt gctgatcgag gcggccgatc actaccgggc cgacctgccg gtcgccgagc
     1681 agcgagcgct cgagccgctc atcaccgact ggcggacacg ccgcgacgac gcccggatcc
     1741 tgctcgtccg cgagctcgac tcggacggct accggcgctg ggtggacgac taccgcgact
     1801 tcgtgcagac cgagggcgcg gcggtccgcc ccgtgggacc agtcgagccg catcgggtcc
     1861 gcgacaccac ggcgtcacgc gtctggacgg cgtacgagca cgtccggggc tacgaggcgg
     1921 tcctccggtg ggccgatgtc gagacactcc acgagctcag gatcgcgggc aagtggctgc
     1981 gctacacgct cgagttcgtg cgcgaggccc tgggggacga cgccgctccg ctgatcgcgc
     2041 gggtgaccgc gctccaggac catctcgggc tcatgaacga cgccgacgtc gccgcgtcga
     2101 tggccaggac gttcctcgtg gaccacgctg gggagctgtc gcagctcgag aacggtgcga
     2161 tcgggcggta cctggtgagc cgagagcgcg aggtggcgag gctgcgacgc ggcgtgggac
     2221 cggcctggcg cggtgtcgcg gggatcggct tccgccggac gctgggtcgg gtggtcgcgc
     2281 ggatctgagt ccgagggccc gtcgacgcgg ccgtcgcctc gacgcggcag ggccgggcgc
     2341 cgtcgcccgg tcaggaccgc cagccgtggg caagctgtgg caggcgatcg cgccatgcga
     2401 cgccggcatg gtcgacggcg aggatcgtgc cttcgcggat accggcctcg gacacgcgca
     2461 gggacgcgac gccgtaccgc tccaggatgg cgtcgagaat gaccgcgccg gccggcagga
     2521 tccgggcacg ggtggggcgg acccggtacc gctcggccgc cgacgccgaa ggcagggccc
     2581 cgaggatcgc cagcgcttcg gcgattccat cgcgcgtcaa cgtccggtcg ccctcgccgg
     2641 cgagcagcac cttgagcagg ttggacgcgg tcccgccgac ggccacgaca tcggcggggc
     2701 tcgcctcgag ggcgtcttcg acggcgtcgc gggcggtcgc gcgcatggcc gcgacctccg
     2761 cgggtatcgg tgggtcctcg acgacgaacc ggtcggtcag ccgcgccgag cccagccgga
     2821 tcccgaccgc ccgtggggga cggctcgcat cgaccacgca gaactccgag ctgccaccgc
     2881 cgacgtcgac gacgagcgtc tcgcgggtga ccggccggcc ctcggtgacg ccgatgagcg
     2941 tcgcgtacgc ctcttcctcg tggctcagga catggagcgg cacgccggcc gtggcggcca
     3001 cctcggcggc gatgcgggcc gcatccgccg cccggcgaat aggctcggtc ccaac
//
LOCUS       DATDDI010000286         4026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_131175, whole genome shotgun sequence.
ACCESSION   DATDDI010000286 DATDDI010000000
VERSION     DATDDI010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131175"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..1211)
                     /locus_tag="VIU37_04050"
     CDS             complement(54..1211)
                     /locus_tag="VIU37_04050"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEY6013147.1"
                     /translation="MTVPASPARRSTAKPVRAAARPGRGRAVPPILVRQVRNGIEESV
                     HRGDIVEVDAAGRLIRQLGDADRVVTLRSTVKPFGLLALIEAGGIGAFDLEPAEIAIL
                     ASSHSGEDLHVRTLQGIYRRTGVSQSSLACGSEGMPLDALTASRLARDGEKAGPVRHM
                     CSGQHTVSLLLSRLRGWDPAEYWKPGHPSQIAYRAAVAAVFDTPSGSLRTAVDGCGIE
                     TFAFPLREVARAFAMLADPSAIPAGDRRVELAPSLTIVRDAMLANPELIGGRHDRLDT
                     SMMKAAPGRLISKSGMEALRGVAILPGPRIGTQSTAASGLAIKIEDGGADRRSSWAAT
                     VEALNQVGLLDGQALRALARYHRPTTRDPQGRLASEAHPAFDLVPVGELVR"
     gene            1377..2018
                     /gene="upp"
                     /locus_tag="VIU37_04055"
     CDS             1377..2018
                     /gene="upp"
                     /locus_tag="VIU37_04055"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014471148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEY6013148.1"
                     /translation="MPAPTVHVSQHPAVLHKLAILRDERTEPKKFRELVRELSWLLGY
                     EALADVGVRPLDIRTPMESMTAHELDARIGLVPILRAGLGMVDAMLELMPTAQVWHLG
                     LFRDERTLRPVEYYNKLPNSATVDLCLILDPMLATGGSATAAIEVLKKWGAVRIKLVN
                     LIAAPEGIEAVTRAHPDVQIHCAALDRSLNDRGYIQPGLGDAGDRQFGTGLGD"
     gene            2087..2740
                     /gene="eda"
                     /locus_tag="VIU37_04060"
     CDS             2087..2740
                     /gene="eda"
                     /locus_tag="VIU37_04060"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008675 -
                     2-dehydro-3-deoxy-phosphogluconate aldolase activity
                     [Evidence IEA];
                     GO_function: GO:0008700 - 4-hydroxy-2-oxoglutarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0009084 - glutamine family amino acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEY6013149.1"
                     /translation="MEVEERLRAAGVVLVLRPPEPPLAEAIASTLLAAGIGAVEVTFR
                     AAGAAAAIQRIRTAVPGLLVGAGTVLTRAQASEALEAGAEFVVAPGSSPDVIEAVLDA
                     GVPMIPGVATPTEVEANLARGLTLLKLFPAEVIGGIGMLRALRGPYPGVRFVPTGGIG
                     PANLGSYLAEPNVIACGGSWLADGVTDRAGLPKVEELARAAAAIVASARTDGAGRRP"
     gene            2737..3837
                     /locus_tag="VIU37_04065"
     CDS             2737..3837
                     /locus_tag="VIU37_04065"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEY6013150.1"
                     /translation="MTALSVKPSAGTTWDLVALGEVMLRLDPGEDRISTARTFRAWEG
                     GGEYNVARGLRRCFGMRTAIVTALADNPVGRLVEGLMGEGGVDLRHVRWVPYDGVGRS
                     ARNGLNFTERGFGVRRALGVSDRGYTAVSQLKPGDVDWEAIFGSEGARWFHCGGIFAA
                     LSETTPAVAREAMVAARRHGAIVSYDLNYRASLWQSIGGNARAIEVNRELAPLVDVML
                     GNEEDFTAALGFVVDGLDPSLPSLDPANFARMIDDVTRTFPNLKVVGTSLRGAHSATR
                     NDWGAICWADGRLYTATPRPGLEILDRVGGGDSFASGLIYGLLTGRDLQTAVEYGAAH
                     GALAMTTPGDTSTATLAEVEAVMAGTSARIVR"
BASE COUNT          541 a         1435 c         1501 g          549 t
ORIGIN      
        1 gcccgagtgt ctgccaggga tcgaagctca ccggcgcccg gctggcgaca cgttcaccgg
       61 acgagctcgc cgacgggcac gaggtcgaat gccgggtggg cctcgctggc cagtcggccc
      121 tgcggatcgc gggtcgtggg gcggtggtag cgagccagcg cgcgcagcgc ctggccgtcg
      181 agcaggccca cctggttgag cgcctcgacg gtcgccgccc agctcgagcg gcgatccgcc
      241 ccgccatcct cgatcttgat cgccaggccc gaggccgcgg tgctctgggt gccgatccgc
      301 gggccgggca ggatcgccac gccgcggagc gcctccatcc ccgacttgct gatcaggcgg
      361 cccggggccg ccttcatcat cgacgtgtcc aggcggtcat ggcgcccgcc gatcagctcg
      421 gggttggcca gcatcgcatc acgcacgatc gtgagcgacg gcgccagctc gacccgccgg
      481 tcgccggccg ggatcgccga cggatcggcc agcatcgcga acgcgcgcgc aacctctcgc
      541 aaggggaagg cgaacgtctc gatgccacag ccgtcgaccg cggttcggag gctccccgac
      601 ggcgtgtcga agacggccgc gacggccgcc cggtaggcga tctgcgacgg atgcccgggc
      661 ttccagtact cggccggatc ccagccgcgc agccggctga gcagcagcga cacggtgtgc
      721 tggcccgagc acatgtgtcg caccgggccg gccttctcgc cgtcgcgcgc cagccgcgac
      781 gcggtcaagg cgtcgagcgg catgccctcg gagccgcagg cgagcgacga ctggctgacg
      841 ccggtccgcc ggtagatgcc ctggagcgtc cggacgtgga ggtcctcgcc ggagtgcgag
      901 ctggcgagga tcgcgatctc ggccggctcg aggtcgaagg ccccgatccc gcccgcctcg
      961 atcagcgcca gcaggccgaa cggcttgacc gtcgagcgga gcgtgaccac gcgatccgcg
     1021 tcgccgagct ggcggatgag ccggccggcc gcgtcgacct cgacgatgtc cccgcggtgg
     1081 acgctctcct cgatcccgtt tcggacctgg cgcacgagga tcggcgggac ggcccggccg
     1141 cgacccggcc gggcggccgc gcgcacgggc ttcgccgtgg agcggcgggc cgggctggcc
     1201 gggacggtca cggtcgatga ttctccgaat ggctggtctg gaagcggtcc ggcgacgctg
     1261 ccgcgcgaca tcgaatcggc gtgcggatcg cgcccggtga ccgcgaggat agcgcctcgc
     1321 ttggtaccat ggacagcacc tgaggtccac tccttttcgt cgaccggagg tcacccgtgc
     1381 ccgccccgac tgtccatgtc tcgcagcatc cggctgtcct ccacaagctc gcgatcctgc
     1441 gcgatgagcg gacggagccc aagaagttcc gggaactcgt ccgcgagctg tcgtggctgc
     1501 tgggctacga ggcgctggcc gacgtcgggg tccggccgct cgacatccgc acgccgatgg
     1561 agtcgatgac cgcgcacgag ctcgacgccc ggatcgggct cgtccccatc ctgcgggcgg
     1621 ggctgggcat ggtcgacgcg atgctcgagc tgatgccgac cgcgcaggtc tggcacctcg
     1681 gcctgttccg cgatgagcgg acccttcgac cggtcgagta ctacaacaag ctgccgaact
     1741 ccgcgaccgt ggacctgtgc ctgatcctgg atccgatgct cgcgaccggc ggctctgcca
     1801 cggccgcgat cgaggtgctc aagaagtggg gcgcggtccg gatcaagctg gtcaacctga
     1861 tcgcggcgcc ggaagggatc gaggccgtca cccgggccca ccccgacgtc cagatccact
     1921 gcgccgcgct ggaccgcagc ctcaacgacc gcggctatat ccagccgggg ctgggcgacg
     1981 ccggcgaccg ccagttcggg acgggcctcg gcgactgagg ccgccgcggg gtagccgttg
     2041 cctcgcagga ccgcccgacc cgagggtacc gacgtggagg acgaacatgg aggttgagga
     2101 gcgcctgcga gcggcgggcg tggtgctggt cctccggccg ccggagccgc ccctggcgga
     2161 ggcgatcgcc tcgacgctgc tggcggcggg gatcggcgcg gtcgaggtca ccttccgtgc
     2221 cgcgggtgcc gcggcggcga tccaacggat ccggaccgcg gtccccggcc tgctcgttgg
     2281 cgccggcacg gtgctcaccc gtgcgcaggc gtccgaggcg ctggaagccg gcgccgagtt
     2341 cgtcgtcgcg cccggcagca gcccggacgt gatcgaggcg gtcctcgacg cgggcgtccc
     2401 gatgatcccg ggcgtcgcca cgccgacgga ggtggaggcc aatctcgcgc gaggcctgac
     2461 gctgctcaag ctcttccccg ccgaggtcat cggcgggatc ggcatgctgc gcgcgctgcg
     2521 cggtccgtat ccgggcgtgc gcttcgtccc gaccggcggc atcgggccgg ccaatctcgg
     2581 gtcgtacctg gccgaaccga acgtgatcgc gtgcggcggg tcctggctgg cggacggcgt
     2641 gaccgatcgt gccgggctgc cgaaggtcga ggagctcgcc cgggccgccg cggcgatcgt
     2701 cgcgtcggcg cgaacggatg gggcggggcg ccggccatga ccgcgctgtc ggtcaagccc
     2761 tccgccggaa ccacctggga tctcgtggcg ctcggtgagg tgatgctccg gctcgatccg
     2821 ggcgaggacc gcatctccac ggcccggacg ttccgggcct gggaaggcgg cggcgagtac
     2881 aacgtggcgc gcggcctgcg ccgctgcttc gggatgcgca cggccatcgt gaccgccctg
     2941 gcggacaacc ccgtcggcag gctcgtcgaa gggctgatgg gcgagggcgg ggtcgacctg
     3001 cgccacgtgc gctgggtgcc gtacgacggc gtcggccggt cggcgcgcaa cggcctcaac
     3061 ttcacggagc ggggcttcgg cgtccggcgg gcgctcggcg tgtccgaccg gggatatacc
     3121 gcggtgtcgc agctcaagcc cggtgacgtg gactgggagg cgatcttcgg gtccgaggga
     3181 gcgcgctggt tccactgcgg gggcatcttc gcggcgctct ccgagacgac gccggccgtg
     3241 gccagggagg ccatggtcgc ggcccgccgc cacggcgcga tcgtgagcta cgacctcaac
     3301 tatcgagcca gcctgtggca gtcgatcggc gggaacgcgc gggccatcga ggtcaaccga
     3361 gagctggcgc cgctggtcga cgtgatgctc ggcaacgagg aggacttcac ggcggccctg
     3421 ggattcgtcg tcgacggcct ggacccgagt ctcccctcac tcgacccggc caacttcgcc
     3481 cggatgatcg acgacgtcac ccgcaccttc ccgaacctca aggtcgtcgg cacgtcgctt
     3541 cgcggcgccc acagcgcgac ccgcaacgac tggggcgcga tctgctgggc ggacggccgg
     3601 ctctacaccg cgacgccgcg gccgggcctc gagatcctcg atcgggtggg cggcggcgat
     3661 tcgttcgcgt ccggcctgat ctacgggctg ctcaccggtc gcgacctcca gacggccgtg
     3721 gagtacgggg ccgcccacgg ggcgctggcc atgacgacgc cgggcgacac ctcgacggcg
     3781 acgctggccg aggtcgaggc ggtcatggcc gggacgtcgg ctcggatcgt gcgctaggga
     3841 gcgcccgcgc tacaggccgg ggcccgcgac cagcgcgagc agcacaccgc cggcgacggt
     3901 gctggcgacc gggccggccg cgttcgcacc catcgcgtgc atcaacggga agttctcgaa
     3961 gtcctcgtgc tgtgccaccc gctggacgac ccgggcagcc atcgggaagg cactgatccc
     4021 ggcggc
//
LOCUS       DATDDI010000287         3041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_193616, whole genome shotgun sequence.
ACCESSION   DATDDI010000287 DATDDI010000000
VERSION     DATDDI010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193616"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..417)
                     /locus_tag="VIU37_04070"
     CDS             complement(136..417)
                     /locus_tag="VIU37_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013151.1"
                     /translation="MSSLARAVSGAAGRVLARPAGRGDDYALCPEDRFWFRPRYTEGQ
                     CPLCGEVAPGGAPPPPLLVRIDRSWFGVAALALMSLGMAALVLFMYFKA"
     gene            complement(414..2522)
                     /locus_tag="VIU37_04075"
     CDS             complement(414..2522)
                     /locus_tag="VIU37_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013152.1"
                     /translation="MTASLVTMALGVTVGVLVAGPAAASSPTTTTTTTTTTLSSGSDS
                     NSPAARYVVINGTVDAASDHEILGSSAFPNYATGAVDNYYSKAHSHVDNSPFAQGTGS
                     PADTGPIGQTAAAGNFQQPQYADARWPGGSGKATFGSQGGPYAVAEASEYKATAESSA
                     GSSELSGPTGSSKLAVPKGFDGRLRQALAAWKAKWQSRLEPKRPPAKVTTPSVTIPTP
                     ATTITTPTATIPTPTAPLGGLPSPPSATVPSVTAPAPSVPSAPTPVTTTPTRSLSSTP
                     SDGASLLESSTRAMLDPKTGALVLSGESRLGRVSLGGGQIVLEGIHVTATITNDGTPS
                     EKVAVSVGNATIGGVPVTIDQDGVHVAGHSQGLPYQQASDALNSALKQAGIKVFLVTP
                     EIETNSCDQSGTGSGSTTTTTTTTNSSDQTGTNPGSSSCDQTGMAPMSSSCDQTSTTP
                     TTTSGNRTGTTPSSSSCDQTGMTTSGSCDQSGTTPTTSSSQQTGTTTTTKSGQETGTT
                     TTTSSDQTGTSPTSGSGEETVTATGVHVVFTQPVSQSGVPAQYAEHILGEVFLDSLAV
                     PAGPAPSLDLLNLLNLNPSSCLGGLHSGRKKTTGGRASKVGGGSSAAGPASSISSSSI
                     GGSSPSSSTSSQPGSSWTGSGSQSTSGSPGNAVQASSTGLVSALRKKPLWLLLAYLLW
                     QAIVIGTGASLWKWRRGAAS"
     gene            complement(2558..>3041)
                     /locus_tag="VIU37_04080"
     CDS             complement(2558..>3041)
                     /locus_tag="VIU37_04080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013153.1"
                     /translation="PESSSLRSVRSANGSDRGSRSPRAVRSPAGGNIVRSLPEQGVSV
                     LIVEQFVAHALDVASRAYVLEKGEVAFSGDAAELARDEAFVRGSYLGESGVDATPVDD
                     AADLRFDDDEQPLAVGLLETIEDRAAQEGRNATEVLLELLRDAIESPARQGNGKGGMS
                     "
BASE COUNT          411 a         1066 c         1081 g          483 t
ORIGIN      
        1 ccgcgcggcc gtcggcggac cggcaggcgt tcggccggaa tgatctcggc cacgatccga
       61 tcctcatgcc cggccggcgc gccgacatcg gtgccgaccc cgattcgcgg acacgcgtcg
      121 gcaggcggtc ggtcctcagg ccttgaagta catgaacagc acgagcgccg ccatccccag
      181 cgacatgagc gcgagtgccg ccaccccgaa ccaggaacgg tcgatccgca cgagcagcgg
      241 cggcggcggc gctcccccgg gagcgacctc gccgcagaga gggcattggc cctcggtgta
      301 gcggggacgg aaccagaaac ggtcctcggg gcagagggcg tagtcgtcgc cgcgccccgc
      361 cggccgcgcg agcacacgac cggcggctcc gctcacggct ctcgcgaggc tgctcacgac
      421 gctgcacctc gacgccactt ccagaggctc gcgccggtgc cgatcacgat cgcctgccac
      481 agcaggtagg cgagcagcaa ccagagcggc ttcttcctca acgccgacac gagccccgtc
      541 gaggaggctt gcacggcgtt gccgggcgag cccgaggtcg actgcgagcc gctgccggtc
      601 cagctcgatc ccggctgcga ggaggtggag gaggaaggcg aggagccgcc gatggaggag
      661 gaggagatcg acgacgccgg ccccgcggcc gacgaaccgc cgccgacctt cgaggcgcgg
      721 ccgcccgtcg tcttcttcct gccggagtgg agaccgccga ggcacgagga cggattgagg
      781 ttgaggagat tgagaagatc gaggctcggg gccggcccgg ccggaaccgc gagcgagtcc
      841 aggaacacct cgccgaggat gtgctcggcg tactgggcgg gaacgcccga ctgggacacc
      901 ggctgggtga acaccacgtg cactccggtg gccgtgacgg tctcctcgcc cgagcccgac
      961 gtgggggacg ttcctgtctg atcgctcgag gtcgtcgtgg tcgtgcccgt ctcctggccc
     1021 gatttcgtcg tcgtggtcgt gcctgtctgc tggctcgagc tcgtcgtggg ggtcgtgccc
     1081 gactggtcgc acgagcccga cgtggtcatg cctgtctggt cgcacgagct cgagctgggt
     1141 gtcgtgcccg tccggttgcc cgaggtcgtc gtgggggtcg tgcttgtctg gtcgcacgag
     1201 ctcgacatgg gggccatgcc cgtctggtcg cacgagctcg acccggggtt cgtgcctgtc
     1261 tgatcgctcg agttcgtcgt cgtcgtcgtg gtggtcgtcg agccgctgcc cgtgcccgac
     1321 tgatcgcacg agttcgtctc gatctcgggc gtgacgagga acaccttgat ccccgcctgc
     1381 ttcagcgcgc tgttcagcgc atcgctggct tgctgatagg gcaggccctg actgtggccg
     1441 gcgacgtgca cgccgtcctg gtcgatcgtg accggaacgc ctccgatcgt cgcgttgccg
     1501 acagaaacgg caaccttctc gctcggggtg ccgtcgttcg tgatcgtcgc ggtgacgtgg
     1561 atgccctcga gcacgatctg gccgccgccg aggctcacgc gtccgaggcg cgactctcca
     1621 ctgagcacca atgcgccggt cttcggatcg agcatggccc gcgtcgagga ttcgagcagc
     1681 gacgcgccgt cgctgggcgt cgatgacagc gatcgcgtcg gagtcgtcgt gacgggcgtc
     1741 ggcgccgacg gcacagacgg cgccggcgcg gtcaccgacg gcacggtcgc cgacggcggg
     1801 ctcggcaagc cgccgagggg cgcggtcggc gtcgggatcg tggcggtcgg cgtcgtgatc
     1861 gtggtggccg gcgtcgggat cgtgacgctc ggggtcgtga ccttggccgg cggccgcttc
     1921 ggctcgaggc ggctctgcca cttcgccttc cacgccgcaa gcgcctgccg tagccgtccg
     1981 tcgaacccct tggggacggc cagcttgctc gacccggtcg gcccgctcaa ttcgctcgag
     2041 cccgccgagg attcggccgt cgccttgtac tcgctcgctt cggcgaccgc gtaggggcct
     2101 ccctggctgc cgaacgtcgc cttgccggag ccgccgggcc agcgggcgtc ggcgtactgc
     2161 ggctgctgga agttgccggc cgcggccgtc tgcccgatcg gaccggtgtc ggcagggctc
     2221 cccgttccct gggcgaacgg cgagttgtcc acgtgcgaat gggccttcga gtagtagttg
     2281 tcgaccgctc ccgtcgcgta gttggggaac gccgagcttc cgaggatctc gtgatcgctc
     2341 gcggcgtcca ccgttccgtt gatgacgacg tagcgcgccg ccggcgagtt cgagtccgag
     2401 cccgacgaca acgtcgtcgt cgtcgtcgtc gtggtggtcg tcggcgacga tgccgccgcc
     2461 gggccggcga cgagcactcc caccgtcacc ccgagcgcca tcgtcaccag cgaggccgtc
     2521 acgaccccca ctgccttgcg tacaggagcg ggccagctca cgacatacct cccttgccgt
     2581 ttccttgtcg cgccgggctc tcgatcgcgt ctcggagcag ctcgagcagc acctcggtcg
     2641 cgttgcggcc ttcctgcgcc gctcggtcct cgatcgtctc cagaaggccg acggcaagcg
     2701 gctgctcgtc gtcgtcgaag cgaaggtccg cggcgtcgtc caccggggtc gcgtcgacgc
     2761 cgctctcgcc gaggtagctg cccctgacga acgcctcgtc ccgggcgagc tcggcggcat
     2821 cgccgctgaa ggccacctcg cccttctcga gcacgtacgc ccgcgatgcg acgtcgagcg
     2881 cgtgcgcgac gaactgctcg acgatcagga cggacacgcc ctgctcgggg agcgaccgga
     2941 cgatatttcc cccggctggc gagcgaaccg cccggggcga acgggaaccc ctgtcggaac
     3001 cgttcgcgga cctaaccgag cggagcgaag aactctccgg g
//
LOCUS       DATDDI010000288         1548 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_401644, whole genome shotgun sequence.
ACCESSION   DATDDI010000288 DATDDI010000000
VERSION     DATDDI010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401644"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..962)
                     /locus_tag="VIU37_04085"
     CDS             complement(<1..962)
                     /locus_tag="VIU37_04085"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEY6013154.1"
                     /translation="MTADRIVPIGEIEAARELIAGKVHRTPMLASATAARVVEAATGA
                     RIGDGRVYLKAEHLQKTGSFKPRGMTAKVASLSAADHERGIITFSAGNAAQGYAFAGA
                     AVGVPVTVVMPAAANPTKAAATRGYGAEVVLEGAHFGEVYAAMERIRDERGLVLCHPF
                     DDPEVIAGHGSVGLEILEDLPEIDVVVVAIGGGGLISGTAAAIRERRPAVRVYGVEPT
                     GSDAMSQALAAGRPVAFAPHSVADGLNAPFAGKWTLAMVRRYVEDVVRLEDPTILAGL
                     RFAMERVKQTVEPAGAAGLAALLTGRIPVRAGERVCVVLSGGNL"
     gene            1041..1424
                     /locus_tag="VIU37_04090"
     CDS             1041..1424
                     /locus_tag="VIU37_04090"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY6013155.1"
                     /translation="MTTATGDASTATAVSPLANTIEIVGPQGPAASMATDEDRAFQRA
                     AIIGRAMADPKRLCVLESLADGELSVSELSSRVRCQVPNMSQHLAVLRSAGLVTARRD
                     GSTVFYRLTDQRVLEAYQLIQSIAR"
BASE COUNT          229 a          598 c          514 g          207 t
ORIGIN      
        1 tcgaggttgc cgcccgagag gacgacgcag acccgctcgc ccgctcgaac cgggatccga
       61 cccgtcagca gcgccgcaag gccggccgcg cccgccggct cgaccgtctg cttgacccgc
      121 tccatcgcga accgcagccc cgcgaggatc gtcggatcct cgagacgaac gacgtcctcg
      181 acgtagcgcc ggaccatcgc cagcgtccac ttgccggcga acggcgcgtt gagcccgtcg
      241 gcgacgctgt ggggcgcgaa ggccacgggc cggccagcgg ccagcgcctg gctcatggcg
      301 tccgagcccg tcggctcgac gccgtagacg cggacagcgg gccgccgctc gcggatggcc
      361 gccgccgtcc cggagatcag cccgccgccg ccgatcgcca cgacgacgac gtcgatctcg
      421 ggcaggtcct ccaggatctc gaggccgacc gagccatgcc ccgcgatgac ctcgggatcg
      481 tcgaaggggt ggcagagcac cagacctcgc tcgtcgcgga tgcgctccat cgccgcgtag
      541 acctcgccga agtgggcacc ctcgaggacg acctcggccc cgtagccgcg ggtcgcggcg
      601 gccttcgtcg ggttcgcggc agcgggcatg acgaccgtga ccgggacgcc caccgcagca
      661 ccggcgaagg cgtagccctg ggccgcgttg ccggcggaga aggtgatgat cccgcgctcg
      721 tgatcggccg ccgacagcga cgccaccttc gccgtcatcc cgcgtggctt gaacgaaccg
      781 gtcttctgga ggtgctccgc cttcaggtac acccgtccat cgccgattcg cgcccccgtg
      841 gccgcctcga cgacgcgcgc cgccgtcgcg ctcgcgagca tcggcgtccg atggaccttg
      901 ccggcgatga gctcgcgcgc cgcctcgatc tcgccgatgg gcacgattcg gtcagcggtc
      961 acggcgggca ggatactcgc gcctcggctc accggttaag cacttgcgcg attgcgcaac
     1021 tgatgcgatc attggccgcg atgaccaccg ccaccggcga cgccagcacg gccacggccg
     1081 tgtctccgct cgccaacacc atcgagatcg tcggcccgca gggaccggct gcctcgatgg
     1141 cgaccgacga ggaccgcgcc ttccagcgcg cggccatcat cggccgggcg atggccgacc
     1201 cgaagcgcct gtgcgtcctc gagtccctcg ccgacggcga gctgtcggtc agcgagctct
     1261 cgtcgcgggt ccggtgccag gtcccgaaca tgagccagca cctcgcggtg cttcgatcgg
     1321 ccggtctcgt gaccgcccgg cgcgacggct cgaccgtctt ctaccgcctc acggaccagc
     1381 gggtcctcga ggcctaccag ctcatccagt cgatcgcccg ctagggcacg cgcgcccgcc
     1441 cagcgggaga aaggaccatc gccatggcga tcaagaccgc caccgacgcg acgttcgagg
     1501 acgtcgtcct ccacaacgac aagcccgtcg tcgtcgactt ctgggccg
//
LOCUS       DATDDI010000289         1551 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_131275, whole genome shotgun sequence.
ACCESSION   DATDDI010000289 DATDDI010000000
VERSION     DATDDI010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131275"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1551)
                     /locus_tag="VIU37_04095"
     CDS             complement(<1..>1551)
                     /locus_tag="VIU37_04095"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY6013156.1"
                     /translation="SFDVVGGREELKARAVAGWETFEGHTPHRPYVDAVEIACRACGG
                     TARRIPDVGNPWLDAGIVPFSTLHFREDPEYWAQWYPADFITESFPGQFRNWFYSMLA
                     MGTVLRREPPFKTIFGYATLFAEDGRPMHKSWGNAIDFDEAAERMGVDVMRWLYTTAR
                     PDDNMRFGWHAADAARRELLVLWNVYAFFVTYARLADWSPSTDAAGRTPPPAERPALD
                     RWIVSRTSATAAEVDRRLADFDALAATRSIARLIDELSTWYLRRSRKRFVRDGGRDAA
                     SAFATLHSTLLTVARIVAPILPFLSEAIYQNLADRDADGQAPESVHLTAYPRPAAAER
                     DEPLEASMAVALRAVELVRTLRAQAGLRTRQPIARLWLALPGGELAEQEALLALVADE
                     VNVKAIELIGDESELVERRVKVLLPRVGKRLGPRIPEVMAAARDGRFALLPDGSVELA
                     GVTLAPDEVELQASPKPGTAVAHDQGLVAVIDTRLTPELLAEGDARELQRAVQDLRRE
                     AGLALDDR"
BASE COUNT          219 a          561 c          563 g          208 t
ORIGIN      
        1 atccggtcgt cgagcgcgag accggcctcc cgtcggagat cctggacggc ccgctgcagc
       61 tctcgggcat cgccctcggc gagcagctca ggggtcagcc gcgtgtcgat gacggccacg
      121 aggccctggt cgtgcgcgac cgcggtcccg ggtttcggcg atgcctggag ctcgacctcg
      181 tcgggggcga gcgtcacgcc ggccagctcg accgagccgt cgggcaggag cgcgaaccgc
      241 ccgtcgcggg cggccgccat cacctcgggg atcctgggcc cgagtcgctt cccgacgcgc
      301 ggcaggagca ccttgacccg ccgctcgacg agctccgatt cgtcgccgat cagctcgatc
      361 gccttgacgt tgacctcgtc ggcgacgagc gccagcagcg cctcctgctc ggccagctcg
      421 ccgcccggca gggcaagcca cagcctggcg atcggctgcc gggtccggag gccggcctgc
      481 gcgcggagcg tccgcacgag ctcgaccgcc cgcagcgcga cggccatcga ggcctccagc
      541 ggttcatcgc gctcggcggc ggccggcctt ggatacgcgg tcaggtgcac gctctccggt
      601 gcctgcccgt ccgcgtcccg gtcggcgagg ttctggtaga tcgcctcgga caggaacggg
      661 aggatcggcg ccacgatccg ggcgaccgtc agcaaggtcg aatgcagggt ggcgaacgcg
      721 ctcgccgcgt cccgcccgcc gtcacgcacg aatcgcttgc gggaccgtcg caggtaccag
      781 gtcgacagct cgtcgatcag gcgcgcgatc gaccgggtcg cggccagggc gtcgaagtcg
      841 gcgagacgcc ggtcgacctc ggcggccgtg gcgctcgtcc gcgacacgat ccagcggtcg
      901 agcgccggtc gctcggccgg gggcggcgtc cggccggccg cgtccgtcga cggcgaccaa
      961 tcggcgaggc gcgcgtacgt cacgaagaag gcgtacacgt tccagagcac caggagctcg
     1021 cggcgggcgg catcggcagc gtgccagccg aagcgcatgt tgtcgtcggg ccgggccgtg
     1081 gtgtagagcc agcgcatgac gtcgacaccc atccgctcgg cggcctcgtc gaagtcgatc
     1141 gcgttgcccc agctcttgtg catcgggcgg ccgtcctcgg cgaacagcgt ggcgtagccg
     1201 aagatcgtct tgaacggcgg ctcgcggcgg agcaccgtgc ccatcgccag catcgagtag
     1261 aaccaattgc ggaactgccc cgggaagctc tcggtgatga agtcggccgg gtaccactgc
     1321 gcccagtact cgggatcctc gcggaagtgg agcgtcgaga acggcacgat cccggcgtcc
     1381 agccacgggt tgccgacgtc cgggatccgg cgggcggtac cgccacaggc gcggcaggcg
     1441 atctcgaccg cgtccacgta gggccgatgc ggcgtatggc cctcgaacgt ctcccagccg
     1501 gcgaccgccc gggccttgag ctcctcgcgg ccgccgacca cgtcgaagga c
//
LOCUS       DATDDI010000290         3733 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_152037, whole genome shotgun sequence.
ACCESSION   DATDDI010000290 DATDDI010000000
VERSION     DATDDI010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3733
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152037"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..1425
                     /gene="ugpC"
                     /locus_tag="VIU37_04100"
     CDS             310..1425
                     /gene="ugpC"
                     /locus_tag="VIU37_04100"
                     /inference="COORDINATES: protein motif:HMM:NF008653.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEY6013157.1"
                     /translation="MATVTFENVNKLYGDFQAVKDLNLEIGDGEFMVLVGPSGCGKTT
                     SLRMIAGLEEITSGTLRIGDRVVNDVPPKDRDIAMVFQSYALYPHMSVRENLAFGLKL
                     RKVPKAEIERRVKETAETIQLEKLLDRKPKELSGGQRQRVALGRAIVREPAVFLMDEP
                     LSNLDAKLRVQTRAEIARLHQRLKTTIVYVTHDQVEAMTMGSRIAVMNDGALQQVGAP
                     QVVYDTPINRFVAGFIGSPAMNFLEVHMEGSGDSARLVAASDWSIPLPTRYREAATPK
                     AGKTLIAGFRPEHLDIGEASQGAGSFRARADVVEFLGNEEQLHVSAAGQDVVAVVDSA
                     HRVKPGDIVNLVLPLDKLHLFDGETGLTLHPDAAVIN"
     gene            1587..2036
                     /locus_tag="VIU37_04105"
     CDS             1587..2036
                     /locus_tag="VIU37_04105"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY6013158.1"
                     /translation="MAGHPGAVAILAIDDEDRVLLVRQWRLAAGQALLEIPAGTLDVS
                     GDGSVEDPDRAARRELEEETGMRAGSWRLLARFYTAPGFTSELMHLYLATDLRLADGH
                     RLGPDEDEHLLLERVPWRDAVAAADRGEVADAKSLVALLWLARDRGA"
     gene            complement(2033..2440)
                     /locus_tag="VIU37_04110"
     CDS             complement(2033..2440)
                     /locus_tag="VIU37_04110"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6013159.1"
                     /translation="MSDDRESADDRESAYDLFQRGHALLDGRHFAQAAIVLERANRLE
                     PGKGSILEALGRAYFNSGQAERASATFEALLEIDPSSHYAHYAIGQCLKRLGQLDRAR
                     THLRLAVALSPDDPLYSGALGRLPPAPGAAGEA"
     gene            complement(2534..3586)
                     /locus_tag="VIU37_04115"
     CDS             complement(2534..3586)
                     /locus_tag="VIU37_04115"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: protein motif:HMM:NF006415.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEY6013160.1"
                     /translation="MNREAPRPMGLTRTRPSREILSGDSADVYFGRAETILAREGMDP
                     LVTMEVFTRQAGVLCGIDEARNLLGHVLAKAAPGEAELEALQDGDVIAPKEIVLRIRA
                     RYRQFGLYETAFLGMLAQSTGWATAARACVEMAAPNPVISFGARHIHPDIADVLDYAA
                     IVGGCVGASTPAGARLAGLAPTGTMPHSLVLIFGDTVEAAMAFDRHVEAEVPRIVLVD
                     TFKDEAEEALRVARALGDRLYGIRLDTPSERGRVTPDLVHEIRARLDQAGFQHVQITV
                     SGGLTPERIATFKEAAAPVDSFAVGSYISGASPIDFTGDIKEIDGRPIAKRGRIPGLT
                     DSPRLEPIDLSVYREG"
BASE COUNT          550 a         1301 c         1345 g          537 t
ORIGIN      
        1 ccgacaggta gttggcggcg cgccagtacg catcgatctg ggccagctcg tccggggcaa
       61 gggtgggtgc gagttcgaca gccatgggtg gcctcatcca gcgtcgtggg ccaagttcag
      121 tcgccctaga gggtaccgcg cgtcgtcgac tccggcgggt ccggcggggc gaatcggggt
      181 tgcgcccggg ttgccgccag cctacgatgc ggtcacccca aggccgctcc cgtacggggc
      241 ccgttcacgt ccgcttcggc ggctgaatgc aagggcccgc gaggctcggc cgggtttgga
      301 ggccgcgcta tggcgactgt gacgttcgag aacgtcaaca agctctacgg cgatttccag
      361 gcagtcaagg acctcaacct ggagatcggg gacggcgagt tcatggtcct ggtcggaccg
      421 tcgggctgcg gcaagacgac cagcctccgg atgatcgccg ggctcgagga gatcaccagc
      481 ggcacgttgc ggatcggcga ccgcgttgtc aacgacgtcc cgcccaagga tcgcgacatc
      541 gcgatggtct tccagagcta cgcgctctac ccgcacatgt cggttcgcga gaacctcgcg
      601 ttcgggctca agctgcgcaa ggtccccaag gccgagatcg agcgccgcgt caaggagaca
      661 gccgagacga tccagctcga gaagctgctc gatcgcaagc cgaaggagct gtccggcggc
      721 cagcggcagc gcgtcgccct gggtcgagcc atcgtccggg agccggccgt cttcctgatg
      781 gacgagccgc tgtccaacct cgacgccaag ctgcgcgtcc agacccgcgc cgagatcgcg
      841 cggctccacc agcggctcaa gacgacgatc gtgtacgtca cccacgacca ggtcgaggcc
      901 atgaccatgg gctcgcggat cgcggtgatg aacgacggcg cgctgcagca ggtcggtgcc
      961 ccgcaggtgg tctacgacac gccgatcaac cggttcgtgg cgggcttcat cggcagcccg
     1021 gcgatgaact tcctcgaagt ccacatggag ggctcgggcg attcggcgcg gctcgtcgcc
     1081 gccagcgact ggtcgatccc gctgcccact cgctaccgcg aggcggccac gccgaaggcg
     1141 ggcaagaccc tgatcgccgg cttccggccg gagcatctcg acatcggcga ggccagtcag
     1201 ggtgcaggct cgttccgcgc ccgggccgac gtggtcgagt tcctcggcaa cgaggagcag
     1261 ctccacgtca gcgccgccgg ccaggacgtc gtggcggtcg tggactcggc gcatcgcgtc
     1321 aagcccggcg acatcgtcaa cctcgtcctg cccctcgaca agctccacct gttcgacggc
     1381 gagaccgggc tgaccctcca cccggacgcc gcggtgatca actgaccacg gatcgctccc
     1441 gcagcgacca gtcggccccg gaggatccct ccggggccga tctcgtcgag cgcgtcgtcg
     1501 attcgcaggt cctccatcgg ggccgctacc tgacgttccg gatcgacacg gtagagcggc
     1561 cggacgggtc ccgggcgacg cgcgagatcg ccggccaccc gggcgcggtc gcgatcctgg
     1621 ccatcgacga cgaggaccgc gtgctgctcg tccggcaatg gcggctggcg gccggccagg
     1681 cgctgctcga gatcccggcc ggcaccctcg acgtctccgg ggatgggtcc gtcgaggatc
     1741 ccgatcgtgc ggcgcggcgc gagctggaag aggaaaccgg catgcgggcc gggtcgtggc
     1801 gcctgctggc gcgcttctac acggcaccgg gcttcacgtc cgagctgatg catctctacc
     1861 tggccacgga cctgcggctc gcggatgggc accggctcgg ccccgacgag gacgagcacc
     1921 tgctgctcga gcgcgtgccg tggcgggacg cagtcgccgc cgccgaccgc ggcgaggtcg
     1981 cggacgccaa gtccctcgtc gcgctcctct ggctggcgag ggatcgaggc gcctaggcct
     2041 cgccggcggc gcctggcgcc ggtggcaacc ggccgagcgc gccgctatag agcggatcgt
     2101 ccggactgag cgccaccgcg aggcgcagat gcgtccgtgc ccgatcgagc tggccgagtc
     2161 gcttgaggca ttggccgatc gcgtagtgcg cgtaatgcga cgacggatcg atctcgagga
     2221 gcgcctcgaa ggtcgcgctc gcccgttccg cctggcccga gttgaagtac gcccgcccga
     2281 gcgcctcgag aatcgaaccc ttgcccggct cgagccggtt ggctcgctcg agcacgatcg
     2341 ccgcctgcgc gaaatgccgc ccgtcgagca aggcgtgacc gcgctggaag aggtcgtagg
     2401 cggattcgcg gtcgtcggcc gactcgcgat cgtcggacat cgagggctcc acccgcagga
     2461 tggtcgcacg gaaccgccaa cggcgcctcg ctgggcgggc cgggggccgg ggtctccgcc
     2521 cgagacccgg accctaaccc tcgcggtaga ccgacaggtc gatcggctcg agacgcggcg
     2581 agtcggtcag ccccgggatc cggccgcgct tggcgatcgg ccggccgtcg atctccttga
     2641 tgtcgccggt gaagtcgatc gggctggcgc cgctgatgta cgagccgacc gcgaacgagt
     2701 cgaccggcgc ggcggcttcc ttgaacgtcg cgatccgctc cggggtcagg ccaccggaca
     2761 ccgtgatctg gacgtgctgg aagccggcct ggtcgaggcg ggcccggatc tcgtggacca
     2821 ggtcgggggt gacgcggccg cgctcggacg gggtgtcgag gcggatcccg tagagccggt
     2881 cgccgagggc gcgagccacc cggagggcct cctccgcctc gtccttgaag gtgtcgacga
     2941 gcacgatccg ggggacttcg gcctccacgt gtcgatcgaa cgccatcgcc gcctcgacgg
     3001 tgtcgccgaa gatgagcacg agcgaatgcg gcatcgtccc ggtcggggcg agtccggcca
     3061 gccgcgcccc ggccggcgtc gacgccccca cgcaaccgcc gacgatcgcg gcgtagtcga
     3121 ggacgtcggc gatgtcggga tggatgtggc gagccccgaa gctgatcacg ggattcggcg
     3181 cggccatctc gacgcaggcg cgagccgcgg tggcccagcc ggtcgattgc gccagcatcc
     3241 cgaggaacgc ggtctcgtac agcccgaact ggcggtagcg agcccggatc cgcaggacga
     3301 tctccttggg cgcgatgacg tcgccgtcct ggagcgcctc gagctcggcc tcgccgggtg
     3361 cggccttggc cagcacgtgc ccgagcaggt tccgggcctc gtcgatcccg cacaggacac
     3421 cggcctggcg ggtgaacacc tccatcgtca cgagcgggtc catgccctcc cgggcgagga
     3481 tcgtctcggc acgtccgaag tagacatcgg ccgaatcgcc cgacaggatc tcgcgcgacg
     3541 ggcgggtgcg agtcaggccc atcgggcggg gtgcctcacg attcatctcc ttcagcgcgt
     3601 ccggcctcgg ccggttccgc ggcggccggc gccgtcgtgg ctgggccgcc gagtgtagcg
     3661 tacggttccg gaaggctgtc cgtggcggac gggtcggcga ggagcttcgc gacctgcgtc
     3721 gcgcggcgcc gtc
//
LOCUS       DATDDI010000291         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_256238, whole genome shotgun sequence.
ACCESSION   DATDDI010000291 DATDDI010000000
VERSION     DATDDI010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256238"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VIU37_04120"
     CDS             complement(<1..310)
                     /locus_tag="VIU37_04120"
                     /inference="COORDINATES: protein motif:HMM:NF022734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3090 family protein"
                     /protein_id="HEY6013161.1"
                     /translation="MPRRRYLFDPPERFVAGTVGLPGDRTFFLQARDGPRVVSVVMEK
                     VQVAVLAERLGELVAELERRGVAEAAVSEGIVPDDSAPLDEPINEAFRAGSLTLGWDG
                     G"
     gene            complement(371..>1705)
                     /locus_tag="VIU37_04125"
     CDS             complement(371..>1705)
                     /locus_tag="VIU37_04125"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY6013162.1"
                     /translation="VAIALLIGAGLGVLARRRFELGAAGFGAFGVIGFVASLGDPVAS
                     PSMVAIAAAVSVGVGLWILDWLPRSARLRPIAGTATSAPLAEMPDWSRRSFLVRAAGV
                     GVAAAVGGLAGRALLDRQRYPPAGAEAALPPPAETVPPLAAGADLSPTIPGLTPIVMP
                     NDRFYKIDTSLLVPGVSTDGWTLRIHGMVDRETVLTWEELIGLPMFEQYVTIACVSNE
                     VGGKLVGNAKWTGVRLRDVLELAGVQAGATQLVGRSVDGWTAGMPTAWVMDPSREPMI
                     AVKMNDEPLPPAHGYPARLIVPGLYGYVSATKWLKELELTTLEAFDGYWVPLGWAKEG
                     PILTQSRIDTPRGGQVAAGTVPIAGIAWAPDRGVARVEVGVDGVWADARLSTPISDAT
                     WVQWVFEWAATPGHHVVQVRATDGTGQVQTETATPPAPDGARGWDGVAFDVS"
BASE COUNT          243 a          643 c          610 g          209 t
ORIGIN      
        1 cgccgccgtc ccagccgagc gtcagggacc cggcgcggaa cgcctcgttg atcggctcgt
       61 cgagcggcgc gctgtcgtcg gggacgatgc cttcgctgac cgccgcctcg gccacgccgc
      121 gtcgttcgag ctcggccacg agctcgccga gccgctcggc gaggaccgcc acctggacct
      181 tctccatcac cacgctgacc acgcgggggc cgtcgcgggc ctggaggaag aaggtccggt
      241 cgccgggcag accgacggtc ccggccacga agcgttcggg tggatcgaag aggtagcgtc
      301 gtcgaggcat ggctggactc tataccgaat cggcgcggcg acggcggagc ggcggccggc
      361 gcgtggccgc tcagctcacg tcgaaggcga cgccgtccca gccgcgcgcg ccgtccgggg
      421 cgggcggggt cgccgtctcg gtctggacct gcccggtgcc gtcggtggcc cgcacctgga
      481 ccacgtggtg ccccggcgtg gccgcccatt cgaagaccca ttggacccag gtcgcgtcgg
      541 agatcggggt ggacagccga gcgtccgccc agacgccgtc gacccccacc tcgacccggg
      601 cgacgcctcg gtccggcgcc caggcgatcc ccgcgatcgg gaccgtcccg gcggcgacct
      661 ggccgccgcg gggcgtgtcg atccgcgact gggtcaggat cgggccttcc ttggcccagc
      721 cgagcggcac ccagtagccg tcgaacgcct cgagcgtggt cagctcgagc tccttgagcc
      781 acttggtcgc cgagacgtag ccgtacagtc cgggcacgat cagccgagcc ggatagccgt
      841 gcgccggcgg cagcggctcg tcgttcatct tcactgcgat catcggctcg cgtgacgggt
      901 ccatcaccca ggccgtcggc atgcccgccg tccagccgtc cacggaccgg ccgacgagct
      961 gggtggcccc ggcctggacg ccggccagct ccaggacgtc ccgcagccgc acgcccgtcc
     1021 acttcgcgtt gccgaccagc ttcccgccga cctcgttgct gacgcaggcg atcgtcacgt
     1081 actgctcgaa catcggcagc ccgatgagct cctcccaggt gagcacggtc tcgcggtcga
     1141 ccatcccgtg gatccggagc gtccagccgt ccgtgctgac ccccgggacg agcaacgacg
     1201 tgtcgatctt gtagaagcga tcgttgggca tcacgatcgg ggtcaggccc ggaatcgtcg
     1261 gcgacagatc cgcaccggcg gcgagcggtg gcacggtctc ggccgggggc ggcagcgccg
     1321 cctcggcacc ggctggtggg tagcgctggc gatcgaggag cgcgcgaccc gccagtccgc
     1381 cgacggcggc cgccacgccc acgccggccg cccggacgag gaacgagcgc cgcgaccagt
     1441 ccggcatctc ggcgagcggc gcgctcgtgg cggtccccgc gatcggtcgc aaccgggcgc
     1501 tccgcggcag ccaatcgagg atccacagcc cgacaccgac cgacacggcg gcggcgatgg
     1561 caaccatgct cggactggcg acggggtcgc cgagcgaggc gacgaagccg atgacgccga
     1621 acgcgccgaa cccggccgcg ccgagctcga aacgacgccg cgccaggacg cccagcccgg
     1681 cgccgatcag cagggcgatg gcaac
//
LOCUS       DATDDI010000292         1500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_131344, whole genome shotgun sequence.
ACCESSION   DATDDI010000292 DATDDI010000000
VERSION     DATDDI010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131344"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1115
                     /locus_tag="VIU37_04130"
     CDS             <1..1115
                     /locus_tag="VIU37_04130"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6013163.1"
                     /translation="GDPRARPGRRLIATEPVSDPAGTPAEPAGVALSGGRPAGVAQPA
                     IVPPPAAEPPPSGPPALPSATGADRRLAELGVLVIMVFWAGNFIVVKGAIGILPPVGF
                     TFLRYVLASVTLLALLRWRTGTIRLPHGDIRAIALLGVIGFGCYQILWPVALQSIPAG
                     DSALLIATTPVLTALMAAATRADQPNAAKLAGAFVSFLGVAMVIAAGQRLDLGASLIG
                     DGLTIVAATCWAIYTVFGARILRRHSPLVATTWAIVAGTLFIAPVGIAQLATADIHEV
                     GLPVVLAIVYSGTLAAGIANVVVFHGLKLLGPTRVTALQSLVPALAVVLAALFLGEAI
                     RPAQVIGGIVILAGVALLRRGAWPGRGAPRVAGGPA"
     gene            1112..>1500
                     /locus_tag="VIU37_04135"
     CDS             1112..>1500
                     /locus_tag="VIU37_04135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013164.1"
                     /translation="MTFEPPGSANAPDPSGVAPPVQPLRPGEPPLAILVDYDGTIALA
                     DVSDTVMAEHVPQIWESEAAAYDAGLMGSRRLMEIEMGLVDAPGEALLATAAAQPHDP
                     GFVPFVRRAQAAGLVIEVVSDGFGFFIR"
BASE COUNT          167 a          578 c          526 g          229 t
ORIGIN      
        1 gaggagatcc tcgagctcga ccaggaaggc gcctgatcgc cacggagccg gtctccgatc
       61 cagcagggac gcccgccgaa ccggcgggcg tcgcgctttc cggcggccgt ccggccggcg
      121 tcgcgcagcc cgccatcgtg ccgccacccg cggccgaacc gccgccttcc ggcccgccgg
      181 ccctcccctc ggccacgggc gccgaccggc gcctggccga gctcggcgtc ctggtcatca
      241 tggtgttctg ggccggcaac ttcatcgtgg tcaagggcgc gatcgggatc ctgccgccgg
      301 tcggcttcac gttcctgcgc tacgtcctcg cgtcggtcac gctgctcgcg ctccttcgct
      361 ggcgaacggg caccatccgg ctgccgcacg gcgacatccg ggcgatcgcc ctgctgggcg
      421 tgatcgggtt cggctgctac cagatcctct ggccggtcgc gctgcagtcc attccggccg
      481 gcgattcggc cctgctgatc gcgacgacgc cggtgctcac cgcactgatg gccgccgcga
      541 cgcgggcgga ccagccgaac gccgccaagc tcgccggcgc cttcgtctcc ttcctcggcg
      601 tcgcgatggt gatcgccgcc ggccagcgcc tcgacctcgg cgcgtccctg atcggcgacg
      661 ggctcaccat cgttgccgcc acgtgctggg cgatctacac cgtcttcggg gcgaggatcc
      721 tgcgccgcca ctctccgctg gtcgcgacga cctgggcgat cgtcgccggc acgctgttca
      781 tcgcgccggt cgggatcgcc cagctggcaa cggcagacat ccacgaggtg ggcctgccgg
      841 tggtgctggc gatcgtctac tccgggacgc tggccgccgg gatcgccaac gtggtcgtgt
      901 tccacgggct caagctcctc ggcccgaccc gggtgaccgc gctccagtcg ctcgtcccgg
      961 cgctcgccgt ggtcctggcc gcgctcttcc tgggcgaagc gatccgtccg gcccaggtga
     1021 tcggcgggat cgtcatcctc gcgggcgtcg cgctcctccg ccgcggcgcc tggccgggac
     1081 ggggtgcacc ccgggtcgca ggagggccgg cgtgacgttc gagccccccg gaagcgcgaa
     1141 cgctccggac ccgagcgggg tggcgccgcc cgtccagccg ctccggccgg gcgagccgcc
     1201 gctcgcgatc ctggtcgact acgacggcac gatcgccctc gccgacgtgt ccgacacggt
     1261 gatggccgag cacgtcccgc agatctggga atcggaggcg gccgcctacg acgcgggact
     1321 gatgggctcg cgccggctga tggagatcga gatggggctc gtcgacgccc cgggcgaggc
     1381 cctcctggcg acggccgccg cacagccgca cgacccaggg ttcgtgccgt tcgtccggcg
     1441 cgcacaggcc gccgggctgg tcatcgaggt cgtctccgac gggttcggct tcttcatccg
//
LOCUS       DATDDI010000293         1588 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_381013, whole genome shotgun sequence.
ACCESSION   DATDDI010000293 DATDDI010000000
VERSION     DATDDI010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381013"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1588)
                     /locus_tag="VIU37_04140"
     CDS             complement(<1..>1588)
                     /locus_tag="VIU37_04140"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6013165.1"
                     /translation="YQAFLSDIAAPRGDKAARLELEKPSPDLNVAAAGFAQGRNDPAD
                     IQILITTFRLFRHVSYIDQAIAIWTEGDARIDALVALGDRLHALISSGGAGPAQIEPL
                     VAQVGDINAQLTVLENRFSATLSDGARWIRDVLFVVASLATALLLVISGAALASFLRR
                     VRRSEARYRQLVAELRESQDRLSFALDAGRMGTWDWEIATGAVHWSENLERIVGVPVG
                     SFGGTLDAYVELVDPDDRPRMREAFQRAVASDGDYMVEVRMGPPGHQATLIAAQGRVV
                     RDAAGTPIRLVGVALDVTARRELEDQLRHAQKMESIGRLAGGIAHDFNNLLTAITGHG
                     ELLAQSLDPADERQADVSAINAAAARAATLTRQLLAYGRQSLLHPEPVNLNEVIIGFE
                     PMLRRLIGEDIRLRTDLAPDLGWVRADAGQLDQVILNLVVNARDAMPTGGTIVLATEN
                     ADLDEAYVVEHPKAHIGPHVSVAVRDNGVGIDPETIGRIFEPYFTTKERGRGTGLGLA
                     TVLGIVEQSGGHIDVTSDPGH"
BASE COUNT          230 a          542 c          572 g          244 t
ORIGIN      
        1 gtggccggga tcgctcgtga cgtcgatgtg gccgccggat tgctcgacga tgcccaggac
       61 cgtggccagc cccagcccgg tcccgcgtcc acgctccttg gtcgtgaagt agggctcgaa
      121 gatccgcccg atcgtctcgg ggtcgattcc gaccccgttg tcgcgcacgg ccacgctgac
      181 gtgaggcccg atgtgggcct ttgggtgctc cacgacatag gcctcgtcga gatccgcgtt
      241 ctccgtcgcc aggacgatcg tgccgccagt gggcatggca tcgcgcgcgt tcaccaccag
      301 gttgaggatc acctggtcga gttgcccggc gtcggcgcgg acccagccga ggtcgggagc
      361 gagatcggtc cgcagccgga tgtcctcgcc gatgaggcgg cgcagcatcg gctcgaaccc
      421 gatgatcacc tcgttgaggt tgaccggctc agggtggagc aggctctggc gaccgtaggc
      481 cagcagctgg cgggtcaggg tggccgcccg ggctgccgcc gcgttgatcg cggagacgtc
      541 cgcctggcgt tcgtcggccg ggtcgaggct ctgcgccagg agctccccgt gcccggtgat
      601 ggcggtcagc aggttgttga agtcgtgcgc gatgccgccc gccagccgcc cgatgctctc
      661 catcttctgg gcgtgacgga gctggtcctc gagctcgcgc cgcgcggtca cgtcgagcgc
      721 gacaccaacc agccggatcg gtgtcccggc tgcatcgcgc acgacccggc cctgcgccgc
      781 gatcagcgtg gcctgatggc ccggcggccc catccgaact tcgaccatgt agtccccgtc
      841 ggaggccacg gcacgctgga acgcctcgcg catgcgcggc cggtcgtcgg gatcgaccag
      901 ctcgacatag gcgtccaggg tcccgccgaa tgagccgacc gggacgccga cgatccgctc
      961 gaggttctcc gaccagtgga cggcccccgt ggcgatctcc cagtcccagg tgcccatccg
     1021 gcccgcatcg agggcgaacg acagccgatc ttggctttcg cgcaactcgg cgacgagctg
     1081 gcgataacgc gcctcggatc gtcgaacgcg acggaggaac gaggccaggg cggcgcccga
     1141 gatcaccagc agcagggccg tggcgagcga ggccacgacg aacaggacgt cgcggatcca
     1201 gcgggcgccg tcgctgaggg tggccgagaa gcggttctcg aggaccgtca gctgcgcgtt
     1261 gatgtccccg acctgcgcga ccagcggctc gatctgcgcg ggaccggcac cgcccgatga
     1321 gatcagggcg tggagtcggt cgccgagcgc gacgagcgcg tcgatcctgg cgtcgccctc
     1381 ggtccagatc gcgatcgcct ggtcgatgta gctgacatgc cggaacagcc ggaacgtggt
     1441 gatcaggatc tggatgtcgg ccggatcgtt gcgcccctgg gcaaaaccgg cggccgcgac
     1501 gttgaggtcc gggctcggct tctcgagctc gaggcgagcg gccttgtcgc cgcgcggcgc
     1561 ggcgatgtcg ctgaggaacg cctggtac
//
LOCUS       DATDDI010000294         3865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_422680, whole genome shotgun sequence.
ACCESSION   DATDDI010000294 DATDDI010000000
VERSION     DATDDI010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3865
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422680"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1514
                     /locus_tag="VIU37_04145"
     CDS             <1..1514
                     /locus_tag="VIU37_04145"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6013166.1"
                     /translation="LLGACSPAPTPPPSGGPDATDVAETPSATPSDATPGPSPTPAPL
                     VVAPASWSDCGRGFLCAAVRVPKDYASPSSGYVNVSIVNLPATDRKHRIGSLVVNPGG
                     PGASGVEFVRDEAAVDGFPAALRKEFDIIGFDPRGVNSSTAVRCIDNLDGRAEIDPSP
                     DNAAELKALVADARAYAAACAKRNEALLPYLSTDAVARDLDAIRQAVGDKQLTYLGFS
                     YGTLIGSTYAELFPDHIRAMALDGAVDPALDLEQLRAGQAKGFEGALSSFLKDCAART
                     ACAFHQDGRSVAAFNALMASIDTKPLHAVRLRDRRLVGPGIAWYSVLAALYSKDAWPT
                     LAASLALAKAGDGSLMLLIADPYRGRKANGSYSNEQDAYTANICLDFPAPTDVAAYTG
                     WAKAFDSAAPHFAALIAYNDLSCAFWPVPAERVPAPVTAAGAPPIVVVGTTGDPATPY
                     PWAVALARELDSGVLITHKGEGHTAWQSSSCVQHAVDRYLLDLIVPKAGLTCS"
     gene            complement(1542..1973)
                     /locus_tag="VIU37_04150"
     CDS             complement(1542..1973)
                     /locus_tag="VIU37_04150"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HEY6013167.1"
                     /translation="MSPVSLPAGIREAVIAQARAAYPNEMCGLIIGDRPAGEGGRALR
                     FEPARNKAASPYRYEIDPDDLLRLTIATDEADEVFWGIVHSHTHSPAVPSPTDVGLAF
                     YPDSLYLLVSLAEDQADPATGQPGIRAWRIVDGAVDEVPLR"
     gene            complement(1970..3037)
                     /locus_tag="VIU37_04155"
     CDS             complement(1970..3037)
                     /locus_tag="VIU37_04155"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEY6013168.1"
                     /translation="MAMPALRAIPPGDHDAPDDHAASAGHDDAHPHFHDHDDLPRHGG
                     RYESILDAIGYTPLVEIPRMSPNPAVRIFAKLEMLNPTGSVKDRVAKYLVEDLEARGL
                     LHQDSIILEPTSGNTGIALAMIGRRKGYRVALVMPDNVTNERRQMAALFGAEVIDSPG
                     SLGSNGAIALAKHLVSKDERFVMPYQYGNPANPQAHYETTGPEILADCPEIDVFVAGL
                     GTAGTLMGVSRYLREQKPGVRVIAAEPLPGEHVQGLRSLDEGFIPEILDPSLIDAKYL
                     VSNREAIAALRDLVFREGIFAGPSCGAVLVAAARVAREMTGGTIVALLPDGGWKYLSA
                     GTFATSLDDMEEALEGGVNWW"
     gene            complement(3043..3315)
                     /locus_tag="VIU37_04160"
     CDS             complement(3043..3315)
                     /locus_tag="VIU37_04160"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquitin-like small modifier protein 1"
                     /protein_id="HEY6013169.1"
                     /translation="MSTVFIPAVLRANVGGAKSLELEGESIRGVVEALVAKHPSLGSQ
                     LLTADGDLNRFVNVYVNGQDVRYLAGLDTPVAPADEVRLLPAMAGG"
     gene            complement(3312..3608)
                     /locus_tag="VIU37_04165"
     CDS             complement(3312..3608)
                     /locus_tag="VIU37_04165"
                     /inference="COORDINATES: protein motif:HMM:NF013094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEY6013170.1"
                     /translation="MLGVVPGILGLLQANEALKVLLGIGQTLAGRLLLFDALETEFTE
                     LKLRRDPNCPVCSDAAVEARKTGRPLAVSNVGADAPFLLTTTGLAGKVSPEARA"
     gene            3666..>3865
                     /locus_tag="VIU37_04170"
     CDS             3666..>3865
                     /locus_tag="VIU37_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013171.1"
                     /translation="MMPLSPRFRSASASRSSAETQSCAAGAAALTLNSGGRSLISIET
                     LGAMTVSQWQRFSSCRTLPGKS"
BASE COUNT          548 a         1393 c         1360 g          564 t
ORIGIN      
        1 tcctgctggg tgcgtgctcg ccggcaccca cgccaccgcc gtcgggcgga cccgacgcga
       61 cggacgtcgc cgagacgccg tccgcgaccc caagcgacgc cacgcccggg ccgtcgccga
      121 cgcccgcgcc gctcgtcgtc gccccggcga gctggagcga ctgcgggcgc ggcttcctgt
      181 gcgccgccgt tcgcgtgccg aaggactacg cgtcgccgtc gagcggctac gtcaacgtct
      241 cgatcgtcaa cctgcccgcg accgatcgca agcatcggat cggatcgctg gtcgtgaacc
      301 cgggcggccc gggcgcctcg ggcgtcgagt tcgtccgcga cgaggccgcg gtcgacgggt
      361 tcccggcggc cctgcgcaag gagttcgaca tcatcgggtt cgacccgcgc ggcgtgaact
      421 cgagcacggc cgtccggtgc atcgacaacc tggacggccg ggccgagatc gacccgtcac
      481 cggacaatgc cgccgagctc aaggcgctcg tcgccgacgc ccgcgcctac gcggccgcgt
      541 gcgccaagcg caacgaagcg ctcctcccgt acctgtcgac cgatgccgtg gcccgcgacc
      601 tcgacgccat ccgccaggcg gtcggcgaca agcagctcac ctacctcggg ttctcctacg
      661 gcacgctgat cgggtccacc tacgcggaac tgttcccgga ccacatccgg gcgatggccc
      721 tcgacggtgc ggtcgatccg gcgctggatc tcgaacagct ccgggccggg caggccaagg
      781 ggttcgaagg cgcgctgtcg agcttcctca aggactgcgc ggcgcggacc gcctgtgcct
      841 ttcaccagga cgggaggtcc gtggcggcct tcaacgcgct gatggcctcg atcgacacca
      901 agccgctgca cgcggtgcga ctcagggatc gacggctcgt tggcccgggc atcgcctggt
      961 attcggtgct ggccgcgctg tactcgaaag acgcatggcc cacgctggcg gcgtcgctgg
     1021 cgctggccaa ggcgggcgac gggtcgctca tgctgctcat cgcagatcca taccggggtc
     1081 gcaaggcgaa cggctcctat tcgaacgagc aggacgccta caccgccaac atctgcctcg
     1141 acttcccggc accaaccgac gtcgcggcct acacaggctg ggccaaggcg ttcgattcgg
     1201 ccgccccgca ttttgcggcg ttgatcgcgt acaacgacct gtcgtgcgcg ttctggcccg
     1261 tgccggcgga gcgggtgccg gcgccggtga cggcggccgg ggcgccgccg atcgtcgtcg
     1321 tcggcacgac cggcgacccg gccaccccgt acccgtgggc cgtggcgctg gccagggagc
     1381 tcgactccgg cgtcctcatc acccacaagg gcgagggcca cacggcgtgg cagtcgagca
     1441 gctgcgtcca gcatgcggtc gaccggtatc tcctggacct gatcgtgccc aaggcgggcc
     1501 tgacctgcag ctagccgggc gccccggtcc gtcgatcgcg atcagcggag cgggacctcg
     1561 tcgaccgcgc catccacgat ccgccacgcc cggatgccgg gctgtccggt cgcggggtcg
     1621 gcctggtcct cggcgagcga cacgagcagg tacagcgaat ccgggtagaa ggccaggccg
     1681 acgtcggtcg gcgacggcac ggccgggctg tgggtgtgcg aatggacgat cccccagaac
     1741 acctcgtccg cctcgtcggt ggcgatggtc aggcggagca ggtcgtcggg gtcgatctcg
     1801 tagcggtagg gcgacgccgc cttgttccgc gccggctcga accggagcgc gcggccgccc
     1861 tcgccggccg gccggtcacc gatgatcagg ccgcacatct cgttgggata ggccgcccgc
     1921 gcctgggcga tcacggcctc gcggatcccg gcggggaggc tgaccgggct caccaccagt
     1981 tgacgccgcc ctcgagggcc tcctccatgt catcgaggct ggtggcgaac gtgccggccg
     2041 agaggtactt ccagccgccg tcggggagca gcgcgacgat cgtcccgccc gtcatctcgc
     2101 gcgccacgcg cgccgccgcg acgaggaccg cgccgcacga cgggccggcg aagatcccct
     2161 cgcggaacac gaggtcgcgc agcgccgcga tcgcctcccg gttcgagacc aggtacttcg
     2221 cgtcgatgag cgacgggtcg aggatctccg ggatgaaccc ctcgtcgagc gagcgcagtc
     2281 cctggacgtg ctcgccgggg agcggctcgg cggcgatcac gcgaacaccg ggcttctgct
     2341 cgcgcaggta gcgcgacacg cccatcaggg tcccggcggt cccgaggccc gccacgaaga
     2401 cgtcgatctc ggggcagtcg gccaggatct ccggacccgt ggtctcgtag tgggcctgcg
     2461 ggttggccgg gttgccgtac tggtacggca tcacgaaccg ttcgtccttg ctgacgaggt
     2521 gcttggccag cgcgatcgcc ccgttgctgc ccagcgatcc cggcgagtcg atcacctcgg
     2581 cgccgaacag cgccgccatc tggcgtcgct cgttggtcac gttgtcgggc atgaccagcg
     2641 ccacgcgata gcccttgcgc cgcccgatca tcgccagcgc gatcccggtg ttgcccgacg
     2701 tcggctcgag gatgatcgag tcctggtgga gcaggccgcg cgcctcgaga tcctcgacga
     2761 ggtacttcgc aacgcggtcc ttgaccgagc cggtcggatt gagcatctcg agcttggcga
     2821 agatgcggac ggccgggttc ggcgacatcc gcgggatctc gaccagcggc gtgtacccga
     2881 tcgcgtcgag gatgctctcg taccgcccgc cgtggcgggg caggtcgtcg tggtcgtgga
     2941 agtgcgggtg ggcgtcgtcg tgcccggccg acgccgcgtg atcgtcgggt gcgtcgtggt
     3001 cccccggggg gatcgcgcgc agggccggca tggccatcgg cctcagcctc cggccatggc
     3061 cggaagcagc cggacctcgt cggcgggcgc caccggcgtg tcgaggcccg ccaggtagcg
     3121 cacgtcctgg ccgttgacgt agacgttgac gaaccggttc aggtcgccgt ccgcggtcaa
     3181 cagctgcgac ccgagcgacg ggtgcttcgc gaccagcgcc tccacgacgc cgcggatcga
     3241 ctcgccctcg agctcgagcg acttcgcgcc accgacattg gcccgcagga ccgccgggat
     3301 gaacaccgtg ctcatgcccg ggcctccggc gagaccttgc cggccaggcc ggtcgtggtc
     3361 aggaggaacg gcgcgtccgc gcccacgttc gacacggcca gcggccggcc ggtcttccgc
     3421 gcctcgacgg cggcgtcgga gcagaccggg cagttcgggt cgcggcggag cttgagctcg
     3481 gtgaactcgg tctcgagggc gtcgaacagg agcagccggc cggccagcgt ctggccgatg
     3541 ccgagcagca ccttgagcgc ctcgttcgcc tggagcaggc cgaggatccc ggggaccacg
     3601 ccgagcacgc cggcaacgga gcagcctggg gccagctctt ctcgaaacgg cgcgccagtt
     3661 cgtccatgat gccgctttcg ccgcgattca ggagcgcctc ggcctcgcgc tccagcgcgg
     3721 aaacccagtc ctgcgctgcc ggtgctgccg cgctcaccct gaattccggc ggcagatcct
     3781 tgatttcgat cgagacgctc ggcgccatga cggtgagcca atggcaaaga ttttcaagct
     3841 gccgcacgtt gccgggaaaa tcctg
//
LOCUS       DATDDI010000295         2365 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_381074, whole genome shotgun sequence.
ACCESSION   DATDDI010000295 DATDDI010000000
VERSION     DATDDI010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381074"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VIU37_04175"
     CDS             <1..652
                     /locus_tag="VIU37_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013172.1"
                     /translation="RSGMATGTRATARAIWGDCLPDRNPDALVRELYAAENRPLIEPS
                     GSQDMIGLVVPGISRLDYDAGVDGGWFPCQIESTSDPETVAWLERVLHLVPVGPRPAG
                     YRPLGRKHLEAGWVRSLGQSGRDCFDAIVRRDLEALGASMNACVRAWAALLPDTLEHP
                     TIAIDLKGLLASYQASYPGAMPSGCGGGYLVVASEGAVPGSFHVTVRTDRTGVTES"
     gene            649..1515
                     /locus_tag="VIU37_04180"
     CDS             649..1515
                     /locus_tag="VIU37_04180"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEY6013173.1"
                     /translation="MSLHLAERSGRTTTARDARRPLVVVAASLDDFSVSDVRRLQQAH
                     RLGDVHLRLASDELVRARTGRPPAFPERERSFLAGHLRYVDSVGVVRTAEAAVRPVRG
                     RRPDIVVVDPADDDPRLEAACSSHGVAYRSIADFALSGLPEDPLPEPSPAVRRVVVTG
                     CFDWLHSGHIQFFLDAAALGELYVVVGSDRNVRLLKGPGHPLRSQDERRYMAQSVRAV
                     HRAEVSTGSGWMDAEPEIARIQPHVYVVNEDGDQPDKRAFCRAHGLDYVVLRRRPHRG
                     LPRRTSTALRGF"
     gene            1585..2061
                     /locus_tag="VIU37_04185"
     CDS             1585..2061
                     /locus_tag="VIU37_04185"
                     /inference="COORDINATES: protein motif:HMM:NF016885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RbsD/FucU family protein"
                     /protein_id="HEY6013174.1"
                     /translation="MLRTTLIHPQILEALAAAGHGSLVLISDANFPSLTAPLHHARRV
                     YLNLRPGMVTVTDVLDALAAVIPIERVALMAPDGGGMPPVQADVTRLLGADTVIDLVA
                     RHQFYAATRTDDLALVIVTGDDRWYANVLLTIGALPPAESPEVADQAPRGPATDMP"
     gene            complement(2025..>2365)
                     /locus_tag="VIU37_04190"
     CDS             complement(2025..>2365)
                     /locus_tag="VIU37_04190"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6013175.1"
                     /translation="SEGWSTWQEQLRGAAARPNVSAKLSGLDTAAGPGWTPAEIRPAV
                     DAALEAFGPDRLMFGSDWPVCRAQSTYGDVIGAVERLLSPLTPLERDAVLGATASRIY
                     GMSVAGPRGA"
BASE COUNT          319 a          858 c          834 g          354 t
ORIGIN      
        1 tcgcagcggc atggcgaccg gcacgcgtgc cacggcccgc gcgatctggg gcgattgtct
       61 gcccgatcgc aacccggacg cgctcgtccg cgagctctat gccgcggaga accggccact
      121 gatcgagccg tccggatccc aggacatgat cgggttggtc gttccgggca tcagccggct
      181 ggactacgac gcgggggtcg acggcggctg gtttccgtgc cagatcgagt cgacgtcgga
      241 tcccgagacc gtcgcctggc tggaacgcgt cctccacctc gttcccgtgg ggccgcgacc
      301 ggccggctac cggccgctcg ggcggaagca tctcgaggcc ggctgggtcc ggtcgcttgg
      361 ccaaagcggt cgcgactgct tcgacgccat cgtccggcga gacctcgagg cgctcggcgc
      421 gtcgatgaac gcctgcgtgc gggcgtgggc cgcgttgctg cccgacacgc tcgagcatcc
      481 gaccatcgcg atcgacctga agggcctgct cgcgtcgtac caggcgtcgt atccgggggc
      541 catgccgagc ggctgcggtg gcgggtacct ggtcgtcgcc tcggaagggg ccgtccccgg
      601 gtcgttccac gtcaccgtcc ggaccgaccg gaccggcgtg accgagtcat gagcctgcac
      661 ctcgccgagc gatcgggtcg gaccacgacc gcccgggacg cccggcgacc gctcgtcgtc
      721 gtcgccgcca gcctcgacga cttcagcgtc agcgacgtcc gtcggctgca gcaggcgcac
      781 cgcctgggcg acgtccacct gcgcctggcg tcggacgaac tggtccgcgc acggacgggt
      841 cggccgccgg cctttccgga acgggagcgg tcgttcctcg ccgggcatct tcggtacgtc
      901 gacagtgtcg gcgtggtccg aaccgccgaa gctgccgtcc gcccggtccg gggtcggcga
      961 cccgacatcg tcgtcgtcga tccggcggac gacgaccctc ggctcgaggc ggcctgctcg
     1021 agtcatgggg tcgcctatcg atcgattgcc gatttcgcgt tgtcgggcct tcccgaggat
     1081 cccctgcccg agccctcgcc ggcagtgcgg cgggtggtcg tcaccggctg tttcgattgg
     1141 ctgcactccg gccacatcca gttcttcctg gatgccgcgg ccctcggcga gctgtacgtc
     1201 gtggtcggca gcgaccggaa cgtccggctg ctgaagggtc ccgggcatcc gctgcgcagt
     1261 caggatgaac ggcgctacat ggcgcagtcg gtccgcgcgg tccaccgcgc cgaggtgtcc
     1321 acgggaagtg gctggatgga cgccgagccg gagatcgcgc gcatccagcc gcacgtctac
     1381 gtggtcaacg aagatggcga ccagccggac aagcgggcgt tctgccgcgc acacggcctc
     1441 gactatgtcg tcctccgacg ccgcccgcat cgcggcctgc cgaggcggac gagcaccgcg
     1501 ttgcgcggtt tctagcggcc tgacagcacg gcatcgcgag ggccgggccg tcgacccgcc
     1561 cgctcggcgc cgggaaagga ttcgatgctc cggacgacct tgatccaccc gcagatcctc
     1621 gaggcgctgg cggccgccgg ccacggttcg ctggtgctca tcagcgatgc caacttcccg
     1681 agcctgaccg ctcccctcca tcacgcgcgg cgcgtctacc tgaacctccg gccggggatg
     1741 gtgacggtca ccgacgtgct cgatgcactc gccgcggtga tcccgatcga acgcgtcgcg
     1801 ctcatggccc cggacggtgg cggcatgccg cccgtccagg ccgacgtcac gcggctcctg
     1861 ggcgccgaca ccgtgatcga cctggtggcg cgacaccagt tctatgccgc gacgcggacg
     1921 gacgacctcg cgctggtcat cgtgaccggc gacgatcgct ggtatgcgaa cgtgctgctg
     1981 acgatcggcg cgttgccccc cgcggagtcg ccggaggtgg cggatcaggc acctcgggga
     2041 ccggcgacgg acatgccgta gatccgggat gcggtggcac cgaggacggc atcccgttcg
     2101 agtggcgtca acggagacag gagccgctcc acggcgccga tgacgtcgcc gtaggtggac
     2161 tgggcccggc acaccggcca gtcgctgccg aacatcagcc ggtccggtcc gaacgcctcg
     2221 agcgccgcgt cgaccgccgg gcggatctcc gcaggggtcc agcccggccc ggcggccgta
     2281 tcgagccccg acagcttggc cgagacgttc ggccgggccg ccgcgccgcg aagctgctcc
     2341 tgccaggtcg accagccctc cgagc
//
LOCUS       DATDDI010000296         1999 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_443251, whole genome shotgun sequence.
ACCESSION   DATDDI010000296 DATDDI010000000
VERSION     DATDDI010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443251"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /locus_tag="VIU37_04195"
     CDS             <1..1260
                     /locus_tag="VIU37_04195"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEY6013176.1"
                     /translation="LAAVSALAFAACSSSGATSAPSSGGGGGGDTSKGTVQIAVELPF
                     QGSEKATSDPILNGIRLAVKDAGGAVGGYAITVPDSAVYDDSLNGAHDPQTGANNMTK
                     IVADPDVAAVIGPVNSSVGKAQIPISNAAGLLQCSPSNTNPDLTKGDPAKQLRTKPNN
                     YIRVVTTDDVQGPAASQYIHDVLKKNSVYIIDDTETFGKGVADSFEADFKSRGGTVVK
                     HDGAPKTTQDYVSIMTAAKALNPEAIYFGGVTATGGARILLAAAQAGLGDVPYVGPDG
                     INDGTGETKDSFLNLAGAAGKNAYSTLAGPGTFEKKDQFDAAYKAEYGTDATGYAGQG
                     YACAQVVLDAIKRAAATNPAKDALKEAVRVAGTDTTAKYDTIVGSISFDENGDTSQKI
                     VSIYSVDTAAANGKGDWKFATQVDYAK"
     gene            1352..>1999
                     /locus_tag="VIU37_04200"
     CDS             1352..>1999
                     /locus_tag="VIU37_04200"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013177.1"
                     /translation="MTALASPAVAPNAIARALRITLYVIAAVALYAIVLWRALVFNSE
                     LAAGNSALGALGAALSRTDAAALNFMAQSIQQTVNALSIGAIYALIALGYTMVYGIIE
                     LINFAHGDIFMLGAFLSVVFLGGITGQTGGVTSIIPLVLLLIGAMLFTMPIIGLLNVG
                     IERAVYRPLRHAPRLAPLITAIGVSFILQNVAIILAGTGDRAAPQVFPLDWQIPLG"
BASE COUNT          352 a          737 c          620 g          290 t
ORIGIN      
        1 ctcgcggctg tcagcgccct ggcattcgcg gcgtgcagct cgtcaggcgc cacgtccgca
       61 ccgagctccg gtggcggtgg tggtggcgac acgagcaagg gcacagtcca gatcgccgtc
      121 gagctgccgt tccagggcag cgagaaggcg acgtcggacc cgatcctcaa cggcattcgc
      181 ctcgcggtga aggacgccgg cggtgcggtc ggtggctatg ccatcaccgt cccggactcg
      241 gccgtctacg acgactcgct caacggcgcc cacgatcccc agacgggcgc caacaacatg
      301 accaagatcg tggccgaccc tgacgtcgcc gcggtcatcg gcccggtcaa ttcgagcgtt
      361 ggcaaggccc agatcccgat ctcgaacgcc gcgggcctgc tgcagtgctc gccgtcgaac
      421 accaacccgg acctgaccaa gggcgatccg gccaagcagc tgcgcaccaa gccgaacaac
      481 tacatccgcg tcgtcaccac ggacgacgtc cagggtccgg cggcgtcgca gtacatccac
      541 gacgtgctca agaagaactc cgtctacatc atcgacgaca ccgagacctt cgggaagggc
      601 gtcgccgact cgttcgaggc ggacttcaag agccgcggcg gcacggtcgt caagcatgac
      661 ggcgccccga agaccaccca ggactacgtc tcgatcatga ccgccgccaa ggcgctcaac
      721 cccgaggcga tctacttcgg tggcgtgacc gcgaccggcg gcgcccggat cctcctcgcc
      781 gcggcgcagg cgggtctcgg cgacgtcccg tacgtcggcc ccgacggcat caacgacggc
      841 acgggcgaga ccaaggactc gttcctcaac ctggcgggcg ccgccggcaa gaacgcgtac
      901 agcacgctgg ccggcccggg caccttcgag aagaaggacc agttcgacgc cgcctacaag
      961 gctgagtacg gcaccgatgc gaccggctac gccggccagg gctatgcctg cgcccaggtc
     1021 gtcctcgacg ccatcaagcg ggccgccgcg accaacccgg ccaaggacgc gctcaaggaa
     1081 gccgtccgcg tcgccggcac ggacaccacg gccaagtacg acaccatcgt cggctcgatc
     1141 tcgttcgacg agaacggcga cacgagccag aagatcgtct cgatctactc ggtcgacacc
     1201 gccgccgcaa acggcaaggg cgactggaag ttcgcaaccc aggtcgacta cgccaagtaa
     1261 ccgaccatga ccggagaggc cgggggtccg caggatcccc ggcctcgacg tatccctcca
     1321 cgaggagccc cagacccgtg aggttcccag cgtgacggca ctcgcgtcac cggccgtcgc
     1381 accgaacgcc atcgcccgcg ccctccgcat cacgctgtac gtgatcgccg cggtcgcgct
     1441 ctacgcgatc gtcctgtggc gcgccctcgt cttcaattcc gagctggcgg ccggcaactc
     1501 ggcgctcgga gcgctcggcg ccgcgctcag ccggaccgac gccgctgcgc tcaacttcat
     1561 ggcccagtcg atccagcaga cggtgaacgc gctgtcgatc ggcgcgatct acgcgctcat
     1621 cgcgctcggc tacacgatgg tctacgggat catcgagctg atcaatttcg cgcacggcga
     1681 catcttcatg ctcggtgcct tcctgtcggt cgtcttcctg ggcgggatca ccggccagac
     1741 ggggggcgtc accagcatca tcccgctggt cctgctgctg atcggcgcca tgctgttcac
     1801 gatgccgatc atcgggctgc tcaacgtcgg catcgaacgc gcggtctacc ggccgctgcg
     1861 ccatgcccca cgactggcgc cgctgatcac ggccatcggc gtgtcgttca tcctccagaa
     1921 cgtcgcgatc atcctcgccg gcacgggcga ccgggctgct ccgcaggtat tcccgctcga
     1981 ttggcagatc cccttgggc
//
LOCUS       DATDDI010000297         1763 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_422770, whole genome shotgun sequence.
ACCESSION   DATDDI010000297 DATDDI010000000
VERSION     DATDDI010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422770"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1241)
                     /locus_tag="VIU37_04205"
     CDS             complement(<1..1241)
                     /locus_tag="VIU37_04205"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY6013178.1"
                     /translation="MPNLTALSPELAASYLAIGIACAAAILGAAGFAWTVVRRQTRRM
                     ARLLDELASATDGSHLAGARGIHDAHLRASFGRLASRVTEVWTLATVDHLTGVLNRQA
                     VLATLETEIERASRFGHQLSVVMVDLDHFKRLNDSHGHAAGDRILRRVADTLRENVRS
                     VDYVGRYGGEEFLLVLPETDVDAAASLAEKLRRLVGRLTVTLDDGFRTSTSLSAGVAG
                     GYGGHLNLEALVRDADNAMYSAKALGRDQVYVFHELEDNGLVRRAAIAPSARNQAIEV
                     GKAAFGAATESLTAALGSRAGFSGKPSTMIAGAAVELALGLGLPESEIERIRVASMLH
                     DLGKLAIPEEILTKPGELNDPEWRIVSEHPKIGQVILEQAGALRDAATIVLHHHEWYD
                     GRGYPYGLAGEEIPVGARIVA"
     gene            complement(1372..>1763)
                     /locus_tag="VIU37_04210"
     CDS             complement(1372..>1763)
                     /locus_tag="VIU37_04210"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEY6013179.1"
                     /translation="LADEMGLFRNEAERFGMLDAVAWRAARLVVDTGLHALRWTRQQS
                     IDFLLEAGLSETDATIETDRYICWPGQALTYKTGQREIQRLRAELTARDGSAFDLRAF
                     HDAVLGHGSLPLATLARELPNWLAAPV"
BASE COUNT          257 a          626 c          627 g          253 t
ORIGIN      
        1 atggccacga tccgcgcccc gaccgggatc tcctcgccgg ccagcccgta tgggtagccg
       61 cgtccgtcgt accactcgtg gtgatggagc acgatcgtcg ccgcgtcacg gagcgcgcct
      121 gcctgctcga ggatgacctg cccgatcttc ggatgctccg agacgatccg ccactccgga
      181 tcgttcagct cgcccggctt ggtcaggatc tcctcgggga tcgccagctt cccgaggtcg
      241 tggagcatgc tcgccacgcg gatccgctcg atctcgctct ccggcaggcc cagcccgagc
      301 gcgagctcga cagcggcacc ggcgatcatc gtcgagggct tgcccgagaa cccggccctc
      361 gagccaagcg ccgcggtcag cgactccgtc gcggcgccga aggccgcctt ccccacctcg
      421 atcgcctggt tgcgggcgct cggggcgatg gcggcccggc gaacgagacc gttgtcctcg
      481 agctcgtgga agacgtagac ctggtcgcgg ccgagcgcct tggcgctgta catcgcgttg
      541 tccgcgtcgc ggacgagggc ttccaggttc aggtggcccc catacccgcc ggccacgccc
      601 gccgacaggc tggtcgacgt gcggaaaccg tcgtcgagcg tcacggtgag acggcccacc
      661 agccggcgga gcttctcggc cagcgaggcc gccgcgtcga cgtccgtctc ggggaggacg
      721 agcaggaact cctcgccgcc gtaccggccc acgtagtcga ccgatcgaac gttctcgcgg
      781 agcgtgtcgg cgacccggcg aaggatccgg tcgccggcgg cgtggccgtg ggagtcgttc
      841 agtcgcttga agtggtcgag gtcgaccatc acgaccgaca gctggtggcc gaagcgcgag
      901 gctcgctcga tctcggtctc gagcgtcgcg agcacggcct ggcgattcag cacgcccgtg
      961 aggtgatcca ccgtggccag cgtccagact tcggtcaccc gactggcgag ccggccgaag
     1021 ctggcgcgaa ggtgagcgtc gtggatcccg cgggccccgg caaggtggct gccgtcggtc
     1081 gccgaggcga gctcatcgag cagtctcgcc atccggcgcg tctgccggcg gacgaccgtc
     1141 caggcgaacc cggcggcgcc gaggatcgcc gcggcacagg cgatgccgat cgcgagatag
     1201 ctcgccgcga gctcaggcga cagcgccgtg aggttgggca tctgtggatt tggactcccc
     1261 ggtggtggac gccactgccc actgccggaa gggtgcaccg ggtcgactcg atgcaccatg
     1321 agccgaaagt cccggcgccg gaggtaccgg tccgcgcggg cgcggcgccc gtcagacggg
     1381 cgcggccagc cagttcggaa gctcgcgggc gagcgtcgca agcggcaggg atccgtgccc
     1441 gagcacggcg tcgtggaagg cccgaaggtc gaacgccgac ccgtcgcgcg ccgtcaactc
     1501 cgcccggagc cgctggatct cccgctgccc ggtcttgtag gtgagggcct ggcccggcca
     1561 gcagatgtag cggtcggtct cgatcgtcgc atcggtctcg gacagaccag cctcgagcag
     1621 gaagtcgatc gactgctggc gcgtccagcg cagggcgtga agccccgtgt cgacgaccag
     1681 ccgggccgcc cgccaggcga ccgcgtcgag catgccgaac cgctcggcct cgttccggaa
     1741 gaggcccatc tcgtcggcca gat
//
LOCUS       DATDDI010000298         4395 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_630872, whole genome shotgun sequence.
ACCESSION   DATDDI010000298 DATDDI010000000
VERSION     DATDDI010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4395
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630872"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIU37_04215"
     CDS             <1..324
                     /locus_tag="VIU37_04215"
                     /inference="COORDINATES: protein motif:HMM:NF013504.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0030245 - cellulose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 6 protein"
                     /protein_id="HEY6013180.1"
                     /translation="GATHFVIDTSRSGRGPWTATTSYPDSQDWCNPPGRGLGLRPTLD
                     TGLPLLDAYLWIKIPGESDGTCTRGGPAGAIDPEWRVVDPAAGQWFPEQALELARLAK
                     PPLGP"
     gene            complement(343..795)
                     /locus_tag="VIU37_04220"
     CDS             complement(343..795)
                     /locus_tag="VIU37_04220"
                     /inference="COORDINATES: protein motif:HMM:NF021538.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 family protein"
                     /protein_id="HEY6013181.1"
                     /translation="MYDLIKYVHVLAAITWVGGAFYAQMLALQIQRSNDPGDIPKFGR
                     HVEYIGTRVFLPASIILFVAGAILVGQRWSFSQAWVSIAIVLWLLSVLAGAVYLGPRM
                     KRIGELFAAEGPSSVAARSLLDRLFLVSRLELVSFVVIVFLMVVKPGV"
     gene            962..1474
                     /locus_tag="VIU37_04225"
     CDS             962..1474
                     /locus_tag="VIU37_04225"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY6013182.1"
                     /translation="MQSTDLGLLILRLVLGLTFAGHGAQKAFGWWNGPGIVGWRGAIT
                     RMGFQPVELFLVLSIGAELVGGLLLAFGLFTPLAAAILIGQLVVIISKAHLPKGFWNT
                     NGGYEYALALAAGVIAVTFIGAGSISLDHALGFAFSDAARAGFLLVGLLGGLAALGAS
                     RLAQPRAVHA"
     gene            complement(1619..2464)
                     /locus_tag="VIU37_04230"
     CDS             complement(1619..2464)
                     /locus_tag="VIU37_04230"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013183.1"
                     /translation="MTAMTSTGARAGAVSGSLGASLGREVNATFAIAWREILRAIKSP
                     ASIGFTVLFPVIFMGIMGGSISQNLGAALPYAYLPFMLIGMIANTMYQGTITGVTNLV
                     EERENDFTAELFVAPISRYAVLLGKIIGSGVASLISLVGIIAMIFVMQIPIDLGDLLR
                     VLALAPILALAGGALGVFFIGFVQDPKVAGLGVALLVFPQMFLSGALIPIANSSGILG
                     LLAKLMPMTYSIDLARNIFYAGKPEYAAVVLHPAWLDLGVTAALFLVFTTVGTYLFVR
                     ADRNR"
     gene            complement(2461..3417)
                     /locus_tag="VIU37_04235"
     CDS             complement(2461..3417)
                     /locus_tag="VIU37_04235"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013184.1"
                     /translation="MEPIIQVEHLVKRYKKSQVAAVDDISFDVQPGELFAFLGPNGAG
                     KTTTISILTTILSKTSGRVTIAGHDLDREATAVRRNIGIIFQNPSIDQHLSGEENIRL
                     HVAIYGLYGYRPLYRAMPAEYRERVERLAHVVGLDDDLFRPLKSFSGGMKRKLEIIRS
                     LMHRPGVLFLDEPTSGLDPVSRHDLWAYLREVRIEDGTTVFLTTHYLEEAEEADRVCV
                     IDHGKLAIIGTPEELKRQLLERAIVLDAEDRPALLTELTALGLTPAVDATGLIRVPYD
                     EQTAQRVIARIDTPLSVLRVHEPSLEEAYVELLRKPDEEAAA"
     gene            complement(3494..>4395)
                     /locus_tag="VIU37_04240"
     CDS             complement(3494..>4395)
                     /locus_tag="VIU37_04240"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEY6013185.1"
                     /translation="LHLVSADDYLKLHPAILVTLRALAPRDQFRNAEVSDVDSLVTAA
                     LDFATEPRDNAAMHDHLAALAAAEGRAVTDVWWRLRREGPFIRTPSEVPWSFSRRPAY
                     VAASAWLPGRAFATEDQALIHLVRRYLGAFGPATIADLRSWSHVSAARLRPAIAAIAD
                     IVELRDEAGRTLLDLEGAPRPAADVPAPPRFLPMWDSVLLAHDDRTRVLPTGYRAAVV
                     SRNGDVLPTFLVDGRVAGLWWVEPDGAATRIVLEPFERIPKAARRSLEDEAERLRAFH
                     EPIEPRVFDRYRRSAARGALPGR"
BASE COUNT          695 a         1485 c         1575 g          640 t
ORIGIN      
        1 ggtgccacgc acttcgtcat cgacacgagc cgcagcgggc gaggaccgtg gaccgcgacg
       61 acgtcgtacc cggacagcca ggattggtgc aacccgccgg ggcgcgggct gggactgcgc
      121 ccgacgctgg acacgggcct gccgctcctc gacgcgtacc tctggatcaa gatcccgggc
      181 gaatccgacg ggacctgcac tcggggagga ccggcgggcg ccatcgatcc ggagtggcgc
      241 gtcgtcgatc cggcggccgg gcaatggttc ccggagcagg ccctcgagct cgcgcgtctg
      301 gcgaagccgc ccctcggtcc gtaggggccg gccccgaacc ggtcagacgc cgggcttgac
      361 gaccatcagg aagacgatca cgacgaagct gacgagctcg aggcgcgaca cgaggaagag
      421 ccggtcgagc agggaccgcg ccgcgaccga gctcgggccc tcggccgcga acagctcgcc
      481 gatccgcttc atccgcggcc cgaggtagac ggcgccggcg aggacggaca gcagccagag
      541 cacgatcgcg atcgacaccc aggcctggct gaagctccag cgctgaccga ccaggatggc
      601 gcccgccacg aacaggatga tcgaggccgg gaggaagacc cgcgtcccga tgtactccac
      661 gtgacggccg aacttcggga tgtcccccgg gtcgttcgaa cgctggatct ggagcgccag
      721 catctgggcg tagaacgcac cgccgaccca ggtgatcgcg gccaggacgt gcacgtactt
      781 gatcaggtcg tacaagcgga ccccctttcg ccgcgcagga taccgactcc gccgagcgtc
      841 ctgcagggcg cctgcgatgc ccgccacacg tgtcgcgatg cgcctgcaag cgatccgggc
      901 taggattgtt gtgcgcgcaa caatctgtcc aggcatcgcg cgctcgcaca gggacgcagg
      961 catgcaatcc accgatctcg gtctcctcat cctccggctc gttctcggac tcacgttcgc
     1021 cgggcacggc gcacagaagg cgttcggctg gtggaacggt cccggcatcg tcggctggcg
     1081 cggcgcgatc acccgcatgg gcttccagcc ggtcgagctg ttcctcgtcc tgtcgatcgg
     1141 cgccgagctc gtcggcgggc tgctcctggc gttcgggctg ttcaccccgc tggccgcggc
     1201 gatcctcatc ggccagctcg tggtgatcat cagcaaggcc cacctgccga aggggttctg
     1261 gaacacgaac ggcggctacg agtacgcgct ggccctcgct gccggcgtga tcgcggtcac
     1321 gttcatcggg gccgggtcca tctcgctcga tcacgcgctg ggcttcgcct tcagcgacgc
     1381 ggctcgggcc gggttcctgc tggtcggcct gctcggcggc ctggccgccc tgggtgcctc
     1441 caggctggcg cagccgcggg ccgtgcacgc ctagggcgtc agcgggcgcc gacgagaagc
     1501 acgaacccac ggagatcgtt cagcttggct cgaacgatct cgattcggcg tcggcggcac
     1561 cccctggcgc ccgcggaccc gagcgatccc gcgacccgct ccccgcgggc caggcgccct
     1621 accggtttcg gtcggcccgc acgaacaggt acgtcccgac agtggtgaag acgaggaaca
     1681 gggcggcggt gacgcccagg tccagccagg ccgggtggag caccacggcg gcgtactcgg
     1741 gcttgcccgc gtagaagatg ttccgggcga ggtcgatgct gtaggtcatc ggcatcagct
     1801 tggccaggag gccgaggatc ccgctcgagt tggcgatcgg gatgagcgcc cccgacagga
     1861 acatctgcgg gaagaccagc agggccacgc cgagcccggc gaccttgggg tcctggacga
     1921 acccgatgaa gaacacgccc agcgctccgc cggcgagtgc gaggatcggc gccagcgcga
     1981 ggacccggag caggtcgccg aggtcgatcg ggatctgcat cacgaagatc atcgcgatga
     2041 tcccgacgag cgagatcagc gaggcgactc ccgagccgat gatcttgccg agcagcaccg
     2101 cgtagcgcga gatcggagcg acgaacagtt cggcggtgaa gtcgttctcg cgctcctcga
     2161 ccaggttggt cacgccggtg atcgtgccct ggtacatcgt gttggcgatc atcccgatca
     2221 acatgaacgg caaataggcg tacggcagcg ccgcgcccag gttctggctg atgctgccgc
     2281 ccatgatccc catgaagatc accgggaaga ggacggtgaa gccgatcgag gcggggctct
     2341 tgatcgcccg caggatctcg cgccaggcga tcgcgaacgt ggcgttcacc tcgcgaccga
     2401 ggctggcgcc caggctgccc gagacggcac ccgcgcgcgc cccggtcgat gtcatggcgg
     2461 tcatgccgcg gcctcctcgt cgggcttgcg gaggagctcc acgtaggcct cctcgagact
     2521 gggttcgtgg actcggagga ccgacagcgg cgtgtcgatc cgcgcgatca ctcgctgggc
     2581 ggtctgctcg tcgtagggca cgcggatcag ccccgtggcg tcgacggcgg gcgtgagacc
     2641 gagggcggtc agctcggtga gcagcgccgg ccggtcctcg gcgtcgagga cgatcgcccg
     2701 ctccagcaac tggcgcttga gctcttcggg cgttccgatg atcgcgagct tgccgtggtc
     2761 gatcacgcag acgcggtcgg cctcctcggc ctcctcgagg taatgggtgg tcaggaagac
     2821 ggtcgtgccg tcctcgatcc ggacctcgcg caggtaagcc cacaggtcgt gccggctgac
     2881 cgggtcgagg ccggacgtcg gctcgtcgag gaacaggacc ccgggccggt gcatcaggct
     2941 gcggatgatc tcgagcttgc gcttcatgcc gcccgagaag gacttgagcg gcctgaacag
     3001 gtcgtcgtcg aggccgacga cgtgggccag gcgctcgacg cgttcgcggt attcggcggg
     3061 catcgcgcga tacagcgggc gatagccgta cagcccgtag atcgcgacgt gaaggcggat
     3121 gttctcctcg ccggacaggt gctgatcgat gctcgggttc tggaagatga tcccgatgtt
     3181 gcggcggacc gcggtcgcct cgcggtccag gtcgtggccc gcgatggtca cccgcccgct
     3241 cgtcttggac aggatcgtcg tcaggatgga gatggtcgtg gtcttgccgg caccgttcgg
     3301 cccgagaaaa gcaaacagct cgcccggctg gacatcaaag ctgatgtcat cgacagccgc
     3361 gacctgtgac ttcttgtagc gcttgacgag gtgctcgacc tgaatgatgg gttccatgac
     3421 cgccatgctc gatggcgatc gtggaggcgc catggagacg cgatggcaag gtggtcggag
     3481 acggcctgac cgctcagcga ccggggaggg cgccgcgggc ggcgctcctc cggtagcggt
     3541 cgaagacccg cggctcgatc ggttcgtgga acgcacgcag ccgctccgcc tcgtcctcga
     3601 ggctgcgccg ggccgccttc gggatacgct cgaacggctc cagcacgatc ctcgtcgcgg
     3661 ccccgtccgg ctcgacccac cagaggcccg cgacgcgacc gtcgaccagg aacgtgggca
     3721 ggacgtcgcc gttccgcgac acgacggcgg cgcggtaccc ggtcggcagg acgcgggtcc
     3781 gatcgtcgtg ggcgagcagg acgctgtccc acatcggcag gaagcgcggc ggcgccggga
     3841 catcggccgc cgggcgcggc gcgccctcga gatcgagcaa cgttcgaccg gcctcgtccc
     3901 gcagctcgac gatgtcggcg atcgccgcga tcgccgggcg caatcgcgcc gccgagacat
     3961 gcgaccacga ccgcaggtcc gcgatcgtcg ccggcccgaa cgctccgaga tacctccgga
     4021 cgaggtgaat gagggcctgg tcctcggtcg cgaacgcccg tcccggaagc caggcgctcg
     4081 cggcgacgta ggcgggtcgc cggctgaacg accacggcac ctcggacggg gtccggatga
     4141 acgggccttc tcgccggagc cgccaccaga cgtcggtcac cgcccggccc tcggcggccg
     4201 cgagcgccgc caggtggtcg tgcatcgcgg cgttgtcgcg cggctcggtg gcgaagtcga
     4261 gcgcggcggt caccagcgaa tcgacgtcgc tcacctcggc gttgcggaac tggtcgcgcg
     4321 gcgcgagggc acggagcgtg acgaggatcg cggggtggag cttcagatag tcgtctgcgc
     4381 tgacgaggtg gaggg
//
LOCUS       DATDDI010000299         1870 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_506079, whole genome shotgun sequence.
ACCESSION   DATDDI010000299 DATDDI010000000
VERSION     DATDDI010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506079"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VIU37_04245"
     CDS             complement(<1..698)
                     /locus_tag="VIU37_04245"
                     /inference="COORDINATES: protein motif:HMM:NF014376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6013186.1"
                     /translation="MEAPLGGSAIRAWKPPVPGIREVLHARFTDHAYPPHTHDTWTLF
                     IVDDGAIRYDLDRHPRGADGAIVGLLPPHVVHDGRPGAPVGYRKRVLYLETSLLPERL
                     IGPAVDRPEIPVPGLRREISRLHDRLGCHDDALEAETRLAFVAERIRAALGEAVERDG
                     LPGHRLAERLRADLDAHLFEPITLAEAAARCGSGTTPMARAFTDAFGIPPHRYLIGRR
                     LDAARDRILRGQPLA"
     gene            747..1334
                     /locus_tag="VIU37_04250"
     CDS             747..1334
                     /locus_tag="VIU37_04250"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEY6013187.1"
                     /translation="MEQLLALVGFSVVSSVTPGPNNVLLWGSGASFGFRRSLRHVVGT
                     ALGIGMMALAVAAGLWALLTTVPEITFGMKLGGSLYLLYLAYQIAGASAIQQGAVARP
                     LGVVQAAIFQVINPKAWVFAVGAITTFRPAGVSMVAGSVLVAATMMVVVVPTAAVWAG
                     GGRVLGPLMLNPRAHRIVSLGLAVLLAGTVAFVWL"
     gene            complement(1397..>1870)
                     /locus_tag="VIU37_04255"
     CDS             complement(1397..>1870)
                     /locus_tag="VIU37_04255"
                     /inference="COORDINATES: protein motif:HMM:NF012696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEY6013188.1"
                     /translation="RALAENARYAAQFDQSALPASPGRKLAVLACMDARLTVEDALGL
                     RTGDAHIIRNAGGLATDDAIRSLVISQQLLGTEEVIVIEHTGCGMLTFRDDEVRRDIA
                     ARTGADVDLPLGAFEDLEANLRAQVGRIRSHPWIKDVPVHGLVYEVETGRLREVA"
BASE COUNT          240 a          650 c          689 g          291 t
ORIGIN      
        1 gcgagcggct ggccccggag gatccggtcg cgtgccgcgt ccagccggcg accgatcagg
       61 tagcgatggg gagggatgcc gaaggcgtcg gtgaatgccc gggccatggg cgtcgtgccc
      121 gacccacaac gtgccgccgc ctcggcgagg gtgatcggct cgaacaggtg ggcgtcgaga
      181 tcggcccgga ggcgctccgc gagccggtgg ccgggcagac cgtctcgttc gacggcttca
      241 ccgagcgccg cccggatccg ctccgcgacg aacgccagcc gggtctcggc ctcgagggcg
      301 tcgtcgtgac acccgagccg gtcgtggagt cgtgagatct cacgacgaag gccggggacc
      361 gggatctccg ggcgatcgac cgcgggcccg atcaggcgct cgggcaggag gctggtctcc
      421 aggtacagga cccgcttccg atacccgacc ggcgcacccg gccggccgtc gtggacgaca
      481 tgcggcggca gcaacccgac gatcgcgccg tccgcgccgc gaggatgtcg atccaggtcg
      541 tagcggatcg ccccgtcgtc gacgatgaac agcgtccacg tgtcgtgggt gtggggcggg
      601 taggcatgat ccgtgaaccg cgcgtggagg acctcgcgga tccccggcac cggcggcttc
      661 caggcccgga tcgccgagcc gccgagtggt gcctccatcg caggatcgta caagacccgg
      721 gcgcaccggc cgtctacggt caccggatgg agcagctcct cgccctcgtc gggttctcgg
      781 tcgtcagctc ggtcacgccc ggtcccaaca acgtcctgct gtggggttct ggtgcgtcat
      841 tcgggttccg ccggtcgctc cggcacgtcg tcggaacggc gctcgggatc gggatgatgg
      901 ccctcgcggt ggccgccggg ctctgggcgt tgctcacgac ggtccccgag atcacgttcg
      961 gcatgaagct cggcgggtcc ctctacctgc tctatctcgc gtaccagatt gccggtgcga
     1021 gcgccatcca gcagggcgcg gtcgctcggc cgctcggcgt ggtccaggcc gccatcttcc
     1081 aggtgatcaa tcccaaggcc tgggtcttcg cggtcggagc gatcacgacg ttccggccgg
     1141 cgggcgtgtc gatggtcgcc gggagcgtgc tggtcgcggc gacgatgatg gtcgtcgtgg
     1201 tcccgacggc cgccgtgtgg gccggcggcg gccgcgtgct cggcccgctg atgctgaacc
     1261 cgcgcgcgca ccgcatcgtc agccttggcc ttgccgtgct gctcgcgggg acggtggcct
     1321 tcgtctggct ctgatgtccg gcccgaggga tcgggcgggc gggcgaccgg ggatcggccg
     1381 cccgccctgc cctgcgtcag gcgacctcgc gaaggcgccc cgtctcgacc tcgtagacca
     1441 gtccgtggac cggcacgtcc ttgatccacg gatggctgcg gatgcggccg acctgcgcgc
     1501 gcaggttcgc ctcgagatcc tcgaacgcac ccagcggcag gtccacgtcc gccccggtcc
     1561 gggcagcgat gtcgcggcgg acctcgtcgt cccggaacgt gagcatcccg cacccggtgt
     1621 gctcgatcac gatgacttcc tcggtcccga ggagctgctg gctgatcacc agcgaacgga
     1681 tcgcgtcgtc cgtggcaagt ccaccggcgt tacggatgat gtgggcatcc ccggtcctca
     1741 ggccgagggc gtcctcgacc gtcaggcgag cgtccatgca cgcgaggacg gccagcttgc
     1801 gcccgggtga ggcggggagt gcggactggt cgaactgcgc ggcgtatcgc gcgttctcgg
     1861 cgagcgcccg
//
LOCUS       DATDDI010000300         2631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_6724, whole genome shotgun sequence.
ACCESSION   DATDDI010000300 DATDDI010000000
VERSION     DATDDI010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6724"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..401)
                     /locus_tag="VIU37_04260"
     CDS             complement(<1..401)
                     /locus_tag="VIU37_04260"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291634.1"
                     /note="catalyzes the reaction of glycine with
                     5,10-methylenetetrahydrofolate to form L-serine and
                     tetrahydrofolate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEY6013189.1"
                     /translation="MSISVPKGLALDSIADVDPDLWAAMLGERRRQHDKIELIASENY
                     VSAAVMEAQGSWLTNKYAEGLPGKRYYGGCEFVDVAERLAQERALALYPGAEHVNVQP
                     HSGAQANMAAYFSVLDPGDRILGMSLAHGGHL"
     gene            533..1636
                     /locus_tag="VIU37_04265"
     CDS             533..1636
                     /locus_tag="VIU37_04265"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF013345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEY6013190.1"
                     /translation="MTQTRLDADALARIETPAVVVDLDRVDANIARMATYMRDRDVAL
                     RPHAKTHKSLELGRRQLAAGAVGLTVATIGEAEVFAAGGIDDLFIAYPLIADRGKAER
                     LRQLAERATLSIGVDSTTGAEAIAAAVRGAARRPRILVEIDCGGRRTGVLPDAAGDLA
                     VRCRALGLEVVGVFTHAGHAYAGPEARAGAASDEVSGLAAAADSLRAEAIEPIVVSAG
                     STPTAMLSARDVVTEERPGTYVFGDRLQAALAGDPESGVALLVAATVVSHGARGGFVV
                     DAGAKILAKDVAPFIDGHGAVLGWDATISRVSDHHGVVELPAGAARPAIGEVVLVVPN
                     HVCPVVNLVDEYLVVRDGRLVDRWPVDARGRNS"
     gene            complement(1658..2314)
                     /locus_tag="VIU37_04270"
     CDS             complement(1658..2314)
                     /locus_tag="VIU37_04270"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY6013191.1"
                     /translation="MIATVVRDDPAGRAAAIEVLRDGGVVALPTDTVYGICVALGTPD
                     GVERLFRVKRRPPDKGIMLLLENAAQAREIGIMTPAAVALADACWPGGLTVVVPLRPG
                     VEVPAALTSGAPTIGLRVPDHEAPRTLAAALGPLPATSANVSGLPEAPDAAAILAQLG
                     DSIELVLDGGPAHGGPASTVVDCTDELPRVLRPGAVPLDRVIAILDGAGVVHRLRETV
                     "
     gene            complement(2311..>2631)
                     /locus_tag="VIU37_04275"
     CDS             complement(2311..>2631)
                     /locus_tag="VIU37_04275"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HEY6013192.1"
                     /translation="PLGATLAIGDQWNDLEMLSEVGHGTAMPSAPRAVQAAARYIAPG
                     LAEEGVARMIEALVLAPPADARASARRLAAAAREAVAAAREAEAGIASKEVALGLPAE
                     RIPA"
BASE COUNT          342 a          964 c          987 g          338 t
ORIGIN      
        1 aggtgcccgc cgtgggcgag gctcatgccc aggatgcggt cgccgggatc gaggacgctg
       61 aagtaggccg ccatgttggc ctgggcgccg gagtggggct ggacgttgac gtgctcggca
      121 cccgggtaga gggcgagggc ccgctcctgg gcgagacgct cggcgacgtc gacgaactcg
      181 cagccgccgt agtagcgctt gcccggcagg ccctcggcgt acttgttcgt cagccacgag
      241 ccctgggctt ccatgaccgc cgcggagacg tagttctcac tggcgatcag ctcgatcttg
      301 tcgtgctgcc ggcgccgctc gccgagcatg gccgcccaca ggtcagggtc gacgtccgcg
      361 atcgaatcga gcgccaggcc cttcgggacg gagatgctca tggtgtcgcc ggctccttcc
      421 tgccgttccg cgaaccctcg gcagccgccg gccctcagcc gacgccccac ggcggtatct
      481 tcccacgaac gacccgggcg acgcggtcgc ccgtccgccg ggaggtgaat ccgtgaccca
      541 gacccgactc gacgccgacg cccttgcccg gatcgagacg cccgcggtcg tggtggacct
      601 cgaccgggtc gacgccaaca tcgcccgcat ggcgacctac atgcgggacc gggacgtggc
      661 cctgcgcccc cacgccaaga cgcacaagag cctcgagctc gggcggcgac agctggccgc
      721 aggcgcggtc gggttgacgg tcgcgaccat cggcgaggcc gaggtgttcg ccgccggcgg
      781 gatcgacgac ctgttcatcg cctacccgct gatcgccgac cgcggcaagg ccgaacgcct
      841 gcgacagctc gcggagcgag caacgctgtc gatcggcgtg gattccacga ccggtgcgga
      901 ggccatcgcc gcggccgtcc ggggagcggc gcgtcggcca cggatcctgg tcgagatcga
      961 ctgcggcggg cggcggacgg gggtgctccc ggacgcggcc ggggacctgg ccgtgcgatg
     1021 ccgggccctt ggcctcgagg tggtcggcgt cttcacccat gccggccacg cgtacgccgg
     1081 gcccgaggca cgggccggcg cggcaagcga cgaggtgtcg ggtctggcgg cagccgcgga
     1141 ttcgctccgg gccgaggcca tcgagccgat cgtggtcagc gccggctcga cgccaacggc
     1201 gatgctctcg gcccgggacg tcgtcaccga ggagcggccg gggacgtacg tcttcggcga
     1261 ccggttgcag gccgcgctcg ccggggaccc ggagtcgggc gtcgccctcc tcgtcgcggc
     1321 aacggtcgtc agtcacggcg cccgcggcgg gttcgtcgtg gacgccggag ccaagatcct
     1381 ggccaaggat gttgccccgt tcatcgacgg gcatggagcg gtgctcgggt gggacgcgac
     1441 gatcagccgg gtgtccgacc accacggcgt ggtcgagctt ccggcaggtg ccgcccggcc
     1501 cgcgatcggc gaggtggtcc tggtcgtccc gaaccacgtc tgccccgtcg tcaacctcgt
     1561 ggacgagtac ctcgtggtgc gcgacggccg gctcgtggat cgctggccgg tggacgcccg
     1621 cggccggaac agctgatccg gcgtggaccg ggacgcccta gaccgtctcg cgcaaccggt
     1681 ggaccacacc ggcgccgtcg aggatcgcga tgacgcggtc gagcgggacg gcgcccggcc
     1741 gcaggacccg cggcagctcg tccgtgcagt cgacgaccgt cgacgccggt ccgccgtgcg
     1801 ccgggccccc gtcgaggacg agctcgatcg aatcgccgag ctgggcgagg atcgccgcgg
     1861 cgtcgggcgc ctccggcagg cccgagacgt tggccgaggt ggccggcagc ggtcccagcg
     1921 ccgccgcgag cgtccgcggc gcctcgtggt ccggcacgcg caggccgatc gtcggggcgc
     1981 ccgaggtcag ggctgccggc acctcgacgc cgggacgcaa cgggaccacc accgtcaacc
     2041 cgcccggcca gcacgcatcg gcgagggcaa cggccgccgg cgtcatgatc ccgatctcgc
     2101 gcgcctgggc ggcgttctcc agcagcagca tgatcccctt gtccggcgga cgccgcttca
     2161 cgcggaagag gcgctcgacg ccgtccggcg tcccgagggc gacgcagatg ccgtagacgg
     2221 tgtcggtcgg cagggccacg acaccgccgt cgcggagcac ctcgatcgct gccgcgcggc
     2281 cggccggatc gtcgcggacg accgtggcga tcacgccggg attctctccg ccggcagtcc
     2341 gagggcgacc tccttggagg cgattcccgc ctcggcctcc cgagcggccg cgaccgcctc
     2401 gcgcgccgcc gcggccagtc gccgggcgga cgcccgggca tccgcgggcg gggcgagcac
     2461 gagcgcttcg atcatccggg caacgccctc ctcggccaga ccgggggcga tgtagcgggc
     2521 ggccgcctgg acggcgcgcg gcgcgctcgg catcgccgtg ccgtgaccca cctcggagag
     2581 catctcgagg tcgttccact ggtcgccgat cgccagcgtg gcgcccaggg g
//
LOCUS       DATDDI010000301         1752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_526682, whole genome shotgun sequence.
ACCESSION   DATDDI010000301 DATDDI010000000
VERSION     DATDDI010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526682"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VIU37_04280"
     CDS             complement(<1..485)
                     /locus_tag="VIU37_04280"
                     /inference="COORDINATES: protein motif:HMM:NF012795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HEY6013193.1"
                     /translation="MSRHTDTVADAIAHPEREQPYAELGLRPDEYERIREILGRRPTS
                     AELAMYSVMWSEHCSYKSSKVHLKQFSEIPQETPVGKMLAGIGENAGVIDVGQGYAVT
                     FKVESHNHPSYVEPYQGAATGVGGIVRDILAMGARPVAVMDPLRFGPLEAADTHRVLP
                     G"
     gene            complement(482..1165)
                     /gene="purQ"
                     /locus_tag="VIU37_04285"
     CDS             complement(482..1165)
                     /gene="purQ"
                     /locus_tag="VIU37_04285"
                     /inference="COORDINATES: protein motif:HMM:TIGR01737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEY6013194.1"
                     /translation="MSLGMRIGVVTFPGSLDDQDAARAVRVVGGEAVALWHADADLHG
                     VDAVILPGGFSYGDYLRCGAIARFAPVMTPLVEAAVGGLPVLGICNGFQILCETHLLP
                     GALVRNDHRKFVCRDQLLRIENNRTPWTSSYDDDAEITVVLKNGEGGFVADDETLDRL
                     EGEGQVVARYLEVNPNGSRRDIAGISNARGNVVGLMPHPEHAVEALTGPSTDGLGFFT
                     SILKGLVEA"
     gene            complement(1162..1410)
                     /gene="purS"
                     /locus_tag="VIU37_04290"
     CDS             complement(1162..1410)
                     /gene="purS"
                     /locus_tag="VIU37_04290"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF004630.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEY6013195.1"
                     /translation="MARVVVDVMLKPEILDPQGKAVEGALGRLGLAGVTSVRQGKSFA
                     LELDGEVDDARLAKIHELAGALLSNPVIEDYVIREVTA"
     gene            complement(1528..>1752)
                     /locus_tag="VIU37_04295"
     CDS             complement(1528..>1752)
                     /locus_tag="VIU37_04295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013196.1"
                     /translation="GRGTGSSVREVVASVAAAIGVPLDAEVVGRRPGDPAVLVASAAR
                     ATAELGWTATRDLDAMTASAWSAFRAAGHA"
BASE COUNT          232 a          620 c          653 g          247 t
ORIGIN      
        1 atcccgggca ggacgcggtg ggtgtcggcg gcctccagcg gaccgaaccg cagcgggtcc
       61 atcaccgcga cgggtcgcgc gcccatcgcg aggatgtcgc gaacgatgcc gccgaccccg
      121 gtggccgcgc cctggtacgg ctcgacgtac gacgggtggt tgtgcgactc gaccttgaac
      181 gtgaccgcgt atccctggcc gacgtcgatc acgccggcgt tctcgccgat gccggcgagc
      241 atcttgccga ccggcgtctc ctgggggatc tcggagaact gcttgaggtg caccttgctc
      301 gacttgtagg agcagtgctc gctccacatg acgctgtaca tggcgagctc ggcgctcgtc
      361 gggcggcggc cgaggatctc gcggatccgc tcgtactcgt cggggcgcag gccgagctcg
      421 gcgtacggct gctcgcgctc ggggtgggcg atggcgtcgg cgacggtgtc ggtgtggcgg
      481 ctcatgcctc gacgagaccc ttcaggatcg aggtgaagaa cccgagaccg tcggtgctcg
      541 ggccggtgag cgcctcgacg gcgtgctcgg ggtgcggcat gagtccgacg acgttgccgc
      601 gcgcgttgct gatgccggcg atgtcgcgcc ggctgccgtt ggggttgacc tcgaggtagc
      661 gggccacgac ctgcccctcc ccctcgagcc ggtccagcgt ctcgtcgtcc gcgacgaagc
      721 cgccctcgcc gttcttgagg acgacggtga tctcggcgtc gtcgtcgtac gacgacgtcc
      781 agggggtgcg gttgttctcg atgcgcagga gctggtcgcg gcagacgaac ttgcggtggt
      841 cgttgcgtac cagcgccccc ggcagcaggt gcgtctcgca caggatctgg aagccgttgc
      901 agatgcccag caccggcagc ccaccgaccg ccgcctcgac gagcggagtc atcacgggcg
      961 cgaaccgcgc gatggcgccg cagcgcaggt agtcgccgta ggagaagccg ccggggagga
     1021 tcaccgcgtc gacaccgtgc aggtcggcgt ccgcgtgcca gagggcgacc gcctcgccgc
     1081 ccacgacgcg caccgcgcgc gccgcgtcct ggtcgtcgag cgagccgggg aaggtgacga
     1141 cgccgatccg catgccgagg ctcacgcggt gacctcgcgg atcacgtagt cctcgatgac
     1201 cgggttggac agcagcgcgc cggcgagctc gtggatcttc gccagcctcg cgtcgtccac
     1261 ctcgccgtcc agctccagcg cgaagctctt gccctggcgg acggaggtga ccccggcgag
     1321 gccgaggcga ccgagcgcgc cctccacggc cttgccctgc gggtccagga tctcgggctt
     1381 gagcatgacg tcgacgacga cgcgggccac ggcgcgctcc aagggagtgg atgaggcggt
     1441 acgacgcatc ctacccagcc gccggagccc tcccgaccgc cgcgtccggc tgcgccggcg
     1501 ggggtgcgcc gggttcggga cgcgggctca ggcgtgaccc gcggcgcgga aggcggacca
     1561 ggcgctggcc gtcatggcgt cgaggtcgcg ggtggccgtc cagccgagct ccgccgtcgc
     1621 gcgggccgcc gacgccacga ggacggcggg gtcgcccggc cgccggccga cgacctcggc
     1681 gtcgagcggt acgccgatcg ccgcggccac cgacgccacg acctcgcgga cgctggaccc
     1741 cgtcccacgg cc
//
LOCUS       DATDDI010000302         1773 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_734932, whole genome shotgun sequence.
ACCESSION   DATDDI010000302 DATDDI010000000
VERSION     DATDDI010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_734932"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1773
                     /locus_tag="VIU37_04300"
     CDS             <1..>1773
                     /locus_tag="VIU37_04300"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013197.1"
                     /translation="EFLRVASAAGQRVEPALLADAAGLDEAAVYDALREAVGRQVLVP
                     HPAAGTERYAFRHALLQEAVYDDLLPGERTRLHSAFARALEATAAADGSRTAELAHHW
                     YAAHDLPRALQLAVRAGDEAERRYAYPEAVEQYERAADIWDQVADATTRAGRDRVDLL
                     AALANVSGYHDPARAVAHIQAAIRAVDATTDPVRCGRLNERLGRYAWIAGQGELAKQA
                     YRAAVDVVPAEPPSEVRATAMAGFAQILMLGGRYTESRAMAEEALALARSVGARSTEG
                     HALNTRGLSRGVAGDVDGAMDDLAAALRIAEEVDSVDDIGRAFANTTWMLELAGRLEE
                     AIAVAERGVAATAELGLMRFFGTHLLCNIASCQYRLGNWDEAEEAVRRADEAGPFGIN
                     EILVQELLARFALARGRFDEAARRLQPLAAVAERAVDIQFVGPVEGSLAELALWQGRP
                     QAAADHVVASLRLIDHSPEIRVGEIYALGLRANADLAELARARRSTVQEDAALASGDA
                     LLEGIRRRHADVVETRPSVAHLSEVWRLLCEAEATRLHRRPDPRAWTACAEAWGRLGQ
                     PYPAAYARWREAEARLETRGEREPA"
BASE COUNT          231 a          650 c          668 g          224 t
ORIGIN      
        1 gagttcctgc gcgtcgcctc cgcggcgggc cagcgcgtgg agccggccct actcgccgac
       61 gccgcggggc tcgacgaggc cgcggtctac gacgccctcc gcgaggccgt gggccggcag
      121 gtcctcgtcc cacacccggc cgccggcacc gagcgctacg cgttccggca cgccctgctc
      181 caggaggcgg tctacgacga cctgctgccc ggggagcgga cccggctcca ctcggcgttc
      241 gcgcgcgccc tcgaggcgac cgcggcggcg gatgggtccc ggacggccga gctcgcccat
      301 cactggtatg ccgcgcacga cctgccgcgc gccctccagc tcgcggtgag ggctggcgac
      361 gaggccgagc ggcgctacgc ctatccggag gcggtcgaac agtacgaacg cgccgccgac
      421 atctgggacc aggtcgccga tgcgacgacc cgcgccggcc gcgatcgggt cgacctgctg
      481 gccgcgctcg ccaatgtgtc gggctaccac gacccggcgc gcgccgtcgc ccacatccag
      541 gcggcgatcc gtgcggtcga cgccacgaca gaccccgtcc ggtgcggccg gctcaacgag
      601 cggctcggcc ggtacgcctg gatcgcgggt cagggcgagc tcgccaagca ggcctaccgg
      661 gccgccgtcg acgtcgtgcc ggcggagccg ccgtcggagg tgcgggccac ggcgatggct
      721 gggttcgccc agatcctgat gctcggcggc cgctacaccg agtcgcgggc aatggcggag
      781 gaggccctgg cgctcgcccg aagtgtcggc gcccgcagca ccgagggtca cgcactcaac
      841 acgcgcggtc tcagccgagg cgtcgcgggc gacgtggacg gtgcgatgga cgacctcgcg
      901 gccgcgctgc ggatcgccga ggaggtcgac agtgtcgacg acatcggccg ggcgttcgcg
      961 aacacgacat ggatgctcga gctggccggc cggctggagg aagcgatcgc ggtggccgaa
     1021 cgcggcgtgg ccgcgaccgc ggagctcggc ctgatgcggt tcttcgggac ccacctgctc
     1081 tgcaacatcg cgagctgcca gtaccgcctt ggcaactggg acgaggccga ggaggcggtc
     1141 cgacgggccg acgaggccgg tccgttcggg atcaacgaga tcctggtcca ggagttgctg
     1201 gcccggttcg ccctcgcccg cggccggttc gacgaggcgg cccggcgtct gcagcccttg
     1261 gcggccgtcg ccgagcgcgc cgtcgacatc cagttcgtcg gtcccgtgga ggggagtctc
     1321 gccgagctgg ccctgtggca gggtcggccg caggccgccg cggatcacgt cgtcgcctcg
     1381 cttcgactga tcgaccattc cccggagatc cgggtcggcg agatctatgc cctcgggttg
     1441 cgggcaaacg cggacctggc ggagctcgcc cgtgcccggc gatcaaccgt ccaggaggat
     1501 gcggccctcg ccagcggcga cgcgctgctc gagggaatcc gccgtcgcca tgccgacgtc
     1561 gtcgaaaccc gtccgtcggt cgcgcacctg tcggaggtct ggcggctgct atgcgaggcc
     1621 gaggcgacac gcctccatcg ccgcccggac ccgcgggcgt ggacagcgtg tgcagaggcc
     1681 tgggggcgac tcggccagcc gtacccggcc gcgtatgccc gctggcggga ggcggaggcc
     1741 cggctggaga cccgcggcga gcgcgaaccg gcc
//
LOCUS       DATDDI010000303         3618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_547774, whole genome shotgun sequence.
ACCESSION   DATDDI010000303 DATDDI010000000
VERSION     DATDDI010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3618
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_547774"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VIU37_04305"
     CDS             complement(<1..485)
                     /locus_tag="VIU37_04305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013198.1"
                     /translation="MSDPAVAPYGAWASPIRIDDVVGDLIGLAEPWLDGDEAYWLEAR
                     PSEGGRRVLVRLGPDGSIADLTPVPFNVRTRVHEYGGGSYTVAGGVVVFSNFADNRLY
                     RLDPGAEAAVPITLVGPWRFADLRVDARRLRVLAVREDHSGSGQARASIVAIPLNGTA
                     PP"
     gene            complement(490..1767)
                     /gene="ahcY"
                     /locus_tag="VIU37_04310"
     CDS             complement(490..1767)
                     /gene="ahcY"
                     /locus_tag="VIU37_04310"
                     /inference="COORDINATES: protein motif:HMM:TIGR00936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEY6013199.1"
                     /translation="MTTTETTPAHDVTDLGLAAEGIRRIEWAEREMPVLRLIRERFER
                     DRPLAGLRIGACLHVTTETANLMRTLKAGGATVVLAASNPLSTKDDVAAALVAEYGIS
                     VYARRGEDRDTYYAHLDAVADTHPQLTMDDGCDLVSLLHSSRPTQVGEVLAGTEETTT
                     GVIRLRAMAADGALGFPVIAVNEAQTKHLFDNRYGTGQSTLDGILRATNILIAGRKVV
                     VAGYGWVGKGIASRMAGHGAHVTVVEVDPVRALEALMDGYQVKTHADAAAWGELFITA
                     TGNVNVFRREHFEAMGDGAIMANSGHFDAELDLAALRALAEGHVRDVRENVQEFDIGG
                     KRLNLVAEGRLVNLGAAEGHPAAVMDMSFANQALSAEYVALHHAELEPRVYVVPEAID
                     AEVARLKLAALGITLEPMTAEQAAYVASWRHGT"
     gene            complement(1764..2630)
                     /locus_tag="VIU37_04315"
     CDS             complement(1764..2630)
                     /locus_tag="VIU37_04315"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013200.1"
                     /translation="MATVAVSRRDAVVARLTTDRPLLRAFLEQDRLYAAYAICDLEER
                     EFSRTRWGLAWAGDAPIALVLEYSGPTPQPLFVMGRLDGIEVVLRDLIHPRVAFVAAP
                     PGVLPAVATAYRIDPGPAMVRMWVDRERFRPYPATVQRLLPVEIGDLNRLYQLGFASW
                     LPASTIAEGVYYGLRVNGQLVAAAGTHVISRTARLAVVGNVLTHGDFRGRGFATAVTG
                     AVTAELLRSCDQVVLNVRADNPPALAAYRRLGYAEHVRFEERLVHRLGSPWPDLATSF
                     RRWFNRRETDRS"
     gene            complement(2630..>3618)
                     /gene="mtnA"
                     /locus_tag="VIU37_04320"
     CDS             complement(2630..>3618)
                     /gene="mtnA"
                     /locus_tag="VIU37_04320"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF004326.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HEY6013201.1"
                     /translation="KMRTSRPYARRATLRGSANALINSRPTAVNLRWAVDRMMARYDA
                     IGDLSEDGDAIADALRAEADAIVFEATTDHGRMAGFGLGILPLPADRPVRILTHCNTG
                     PLAGGQFGTALGVVQAAHNADVPLHVWVDETRPYLQGARLTAWELAQAGVDHTLIPDV
                     AAGHLMARGEVDVVLVGGDRVAANGDTANKIGTYTLAVLAARHRIPFYVVAPTSSIDL
                     DTPDGSAIPIEERKAEEVLEFRGVRVAPIGTQVRNPAFDVTPAELIDGIVTEEGVVRA
                     PFESGLRAAVAAGLARWGRGRPPGAGAGDPAVPADGPATGDPAAPPDAAVAG"
BASE COUNT          486 a         1284 c         1353 g          495 t
ORIGIN      
        1 ggtggggccg tcccgttgag cgggatcgcc acgatcgacg cccttgcctg gccggatccg
       61 gaatggtcct cgcggaccgc gagcacccgg agccgacgcg catcgacccg caggtcggcg
      121 aaccgccacg gcccgacgag cgtgatggga acggcggcct cggcgcccgg gtccagccgg
      181 tacagccggt tgtcggcgaa gttggagaag acgaccacgc cgccggcgac cgtgtaggat
      241 ccgccgccgt actcgtggac ccgggtccgg acgttgaacg gcaccggcgt caggtcggcg
      301 atggacccgt ctggcccgag tcggacgagg acacgccggc cgccctcgga cgggcgggcc
      361 tcgagccagt aggcctcgtc gccgtcgagc cagggctcgg ccagcccgat caggtcgccg
      421 acgacgtcgt cgatccggat cggcgacgcc cacgcgccgt atggcgcgac cgcggggtcg
      481 gacacgcgac taggtcccgt ggcgccagga tgcgacgtag gccgcctgtt cggcggtcat
      541 cggctcgagc gtgatcccca gcgccgccag cttgagcctc gccacctcgg cgtcgatcgc
      601 ctccgggacg acatagaccc gcggctcgag ctcggcatgg tggagcgcga cgtactcggc
      661 cgacagggcc tggttggcga agctcatgtc catgacggcc gccggatggc cctcggccgc
      721 ccccaggttg acgagccggc cctcggcgac gaggttcagc cgcttgccgc cgatgtcgaa
      781 ctcctggacg ttctcgcgga cgtcgcgcac gtgtccctcg gccagggcgc gcagcgcggc
      841 caggtcgagc tcggcgtcga agtggccgga gttggccatg atcgccccgt cgcccatcgc
      901 ctcgaagtgc tcacggcgga agacgttgac gttgccggtg gcggtgatga acagctcgcc
      961 ccaggcggcc gcgtcggcgt gggtcttgac ctggtagccg tccatcagcg cctcgagcgc
     1021 gcggaccggg tcgacctcga cgaccgtgac atgggcgccg tggccggcca tccgggaggc
     1081 gatccccttg ccgacccagc cgtagccggc gaccacgacc ttgcggccgg cgatcaggat
     1141 gttggtcgcc cgaaggatcc cgtcgagggt gctctggccg gtcccgtagc ggttgtcgaa
     1201 gaggtgcttg gtctgggcct cgttgaccgc gatgaccggg aagccgagcg cgccgtcggc
     1261 ggccatggcc cgcagccgga tcacgccggt cgtcgtttcc tcggtcccgg ccaggacctc
     1321 gccgacctgg gtcggccggc tgctgtgcag gagcgagacg agatcgcagc cgtcgtccat
     1381 cgtcagctgc gggtgggtgt cggcgaccgc gtcgaggtgg gcgtagtacg tgtcgcggtc
     1441 ctcgccgcgc cgggcgtaga ccgagatccc gtactcggcc accagggcgg ccgcgacatc
     1501 gtccttggtg gacagcggat tgctggcggc cagcacgacc gtcgcgccgc ccgccttgag
     1561 cgtccgcatc aggttggccg tctcggtggt gacatgcagg caggccccga tccgcagccc
     1621 ggccagcggc cggtcgcgct cgaaccgctc gcggatgagg cgcaggacgg gcatctcgcg
     1681 ctccgcccat tcgatccgtc ggatcccctc ggccgccagg ccgaggtccg tcacgtcgtg
     1741 ggcgggagtc gtctcggtgg tggtcatgag cggtcggtct ccctgcgatt gaaccagcgg
     1801 cggaatgacg tggcgaggtc cggccacgga gagccgaggc gatggacgag ccgctcctcg
     1861 aagcggacgt gctcggcgta cccgaggcgg cgataggcgg cgagcgccgg cgggttgtcg
     1921 gcgcggacgt tgagcacgac ctggtcgcac gaccgcagga gctcggcggt gacggcgccg
     1981 gtcaccgcgg tcgcaaaccc gcggccgcgg aagtcgccat gggtgaggac gttgcccacg
     2041 acggccagcc gggcggtccg gctgatcacg tgcgtccccg cggcggccac cagctggccg
     2101 ttcacccgga ggccgtagta cacgccctcg gcgatcgtcg aagccgggag ccacgacgcg
     2161 aacccgagct ggtagagccg gttgaggtcc ccgatctcga cgggcaggag tcgctggacg
     2221 gtggcggggt atgggcggaa ccgctcgcga tcgacccaca tccggaccat cgccgggccc
     2281 gggtcgatcc ggtatgccgt cgccacggcc ggcaggacgc cgggcggtgc cgcgacgaag
     2341 gcgacgcgcg ggtggatgag gtcccgaagc acgacctcga tgccgtcgag ccggcccatc
     2401 acgaacagcg gctgcggggt gggcccgctg tactcgagga cgagcgcgat cggcgcgtcc
     2461 ccggcccatg ccagccccca gcgcgtcctc gagaactcgc gctcctcgag atcgcagatc
     2521 gcgtaggccg cgtagaggcg gtcctgctcg aggaaggcgc ggaggagcgg gcgatcggtc
     2581 gtcaggcggg cgacgacggc gtcgcgacgg ctgaccgcga ccgtcgccat cagccggcca
     2641 cggccgcatc ggggggcgcg gccggatccc cggtcgcggg cccgtctgca ggtacggccg
     2701 ggtcgccggc cccggcaccc ggcggcctgc ccctccccca acgcgccagg ccggcggcga
     2761 cggccgctcg caggccggac tcgaacgggg cgcggacgac gccctcctcg gtcacgatgc
     2821 cgtcgatcag ctcggccggg gtgacatcga acgcggggtt gcggacctgg gtgccgatcg
     2881 gcgccacgcg gacgccgcgg aactcgagga cctcctcggc ctttcgctcc tcgatcggga
     2941 tcgcgcttcc gtcgggcgtg tccaggtcga tcgagctcgt gggggcgacc acgtagaacg
     3001 ggatccggtg acgggccgcg aggacggcca gcgtgtacgt cccgatcttg ttggccgtgt
     3061 cgccgttggc ggccacccgg tcgccgccga cgaggacgac gtccacctcg ccgcgtgcca
     3121 tcaggtgtcc cgccgcgacg tccgggatca gggtgtggtc gacgcccgcc tgggcgagct
     3181 cccaggcggt gagcctcgcg ccctggaggt acggccgggt ctcgtccacc cacacgtgga
     3241 gcggcacgtc ggcgttgtgt gccgcctgga cgaccccgag cgcggtgccg aactggccgc
     3301 ccgccagcgg cccggtgttg cagtgggtca ggatccggac gggccggtcc gccggcagcg
     3361 ggaggatccc cagcccgaac ccggccatcc ggccgtgatc cgtcgtcgcc tcgaacacga
     3421 tcgcgtcggc ctcggcgcgg agggcgtcgg cgatcgcgtc gccatcctcg gacaggtcac
     3481 cgatcgcgtc gtagcgggcc atcatccgat cgacggccca gcggaggttg accgccgtcg
     3541 gacgcgaatt gatcagcgcg ttggccgatc cccgcagcgt cgcccgccgc gcgtacggcc
     3601 gtgaggtccg catcttct
//
LOCUS       DATDDI010000304         2507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_672441, whole genome shotgun sequence.
ACCESSION   DATDDI010000304 DATDDI010000000
VERSION     DATDDI010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672441"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2006)
                     /locus_tag="VIU37_04325"
     CDS             complement(<1..2006)
                     /locus_tag="VIU37_04325"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013202.1"
                     /translation="MSLTRLAWRSLRARTLRSLLSGLGVALGVAVLFAGLATNAGIES
                     SVNSTVRDLVGRADLRVAAFGERGLTPETVRAIKETPGVEVIAPALQRRTYLGPSLDA
                     GQALPPPVTVLGIDPVAEPQLHDLHLVAGSLLREPTEPSALISEQLANEDGLTVGAPI
                     TMQGTGDRVTYRVIGILAGEGPLNGAFGRIVVVPLQTAQAVFGDDAVTRVDIGVAAGT
                     DVGTVSDALVSRLVTQPYVLSTPQDIAATLRNSTSDFQATTALIAAIALFAGAFLIFN
                     TLSMTVVEQVRDVGLLRAAGATRRQVTRFMLSQALVLGAFGSLLGIGLGALLAAGMVA
                     YVRTIGSVTLQRPAIPPDAAVLAVLVGIGVTLAAALEPARRAGRIQPVEALKARLDLP
                     SARRARLRWLVGVFVIVTIVGLVAAPRGAGVVQALVVYAVLLVGTLCIPLILPAVARL
                     AGIPFRLVLRFEERLARSAVVRDPSRSTLTLGALTIGLAMIVALGGVGQHARAAAGAW
                     IADVVPGELILSSIRPVAPDEGVEADLRAAVPSIARISPIATFDVALQGARTDAAAVV
                     GADLAADGRLRFTAGDRASALAAIDAGGATIVPAGLADHLGLGVGQTLTVPTDSGTPL
                     ALRVVGIVERSIPGSSGEALLVGWKDATLLGVAGADAFAIRFAS"
     gene            complement(2016..>2507)
                     /locus_tag="VIU37_04330"
     CDS             complement(2016..>2507)
                     /locus_tag="VIU37_04330"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013203.1"
                     /translation="TGFVFQSFNLIPLLDVVENVALPFTIAGGDPTKGELADRIRDVI
                     ELVDLTGKEHHKPDQLSAGEQQRVAVARALVTRPALLFADEPTGNLDYTTGTEILDAL
                     KRSCVERGQTIVLVTHDAKAAAYADRVMVVGDGQIRETIELGRRDTHEATPLIARLAQ
                     LGL"
BASE COUNT          378 a          909 c          925 g          295 t
ORIGIN      
        1 tccgacgcga accggatggc gaacgcatcg gcgcccgcca cgcccaggag ggtcgcgtcc
       61 ttccagccga cgagcagcgc ctcgccgctg gatccgggga tcgatcgctc gacgatgccg
      121 acgaccctga gggcgagcgg cgtgccgctg tccgtcggca ccgtgagggt ctgcccgacc
      181 ccgaggccca ggtggtcggc cagcccggcg ggcacgatcg tggcgccacc cgcgtcgatc
      241 gcggccaggg cggaggcgcg gtcaccggcg gtgaaccgga gccggccatc ggcggccagg
      301 tccgcgccga ccaccgcggc ggcatcggtc cgggcaccct ggagcgcgac gtcgaacgtg
      361 gcgatcgggc tgatccgggc gatgctcggc accgcggccc ggaggtcggc ctcgaccccc
      421 tcgtcgggcg cgaccggtcg gatcgacgac aggatcagct caccgggcac gacgtccgcg
      481 atccaggcac ccgcggccgc ccgggcgtgc tgccccaccc cgccgagcgc gacgatcatc
      541 gccagcccga tcgtcagggc ccccagcgtc agggtcgatc ggctcggatc gcggaccacg
      601 gcactccggg ccagccgctc ctcgaagcgg agaaccagcc ggaacgggat cccggccagg
      661 cgcgccacgg ccggcaggat cagcgggatg cacagcgtcc cgacgagcag gaccgcgtag
      721 acgacgagcg cctggacgac gccggcgcca cgcggcgccg cgaccagacc gacgatcgtc
      781 acgatgacga acacgcccac cagccatcga agccgggcgc gccgagccga cggcaggtcg
      841 agccgcgcct tgagcgcctc gaccggctgg atccggccgg cccgccgggc aggctcgagc
      901 gccgcggcca gcgtcacgcc gatccccacg agcaccgcga ggacggcggc atccggcggg
      961 atcgccggac gttggagcgt gaccgatccg atcgtccgga cgtaggcgac catgccggcc
     1021 gccagcaggg ccccgagccc gatcccgagc agcgacccga acgcgccaag caccagcgcc
     1081 tggctcagca tgaaccgcgt cacctggcgc cgcgtggcgc cggccgcgcg cagcaggccc
     1141 acgtcgcgga cctgctcgac gaccgtcatc gacagcgtgt tgaagatgag gaatgcgcca
     1201 gcgaacaggg cgatcgccgc gatgagcgcg gtggtcgcct ggaagtccga ggtcgaattg
     1261 cgcagggtcg ccgcgatgtc ctgcggcgtg gacagcacgt acggctgggt cacgagccga
     1321 gacacgagcg catccgaaac cgtcccgacg tcagtgccgg ccgcaacgcc gatgtcgacg
     1381 cgggtcaccg cgtcgtcccc gaacaccgcc tgggccgtct ggagtggcac cacgacgatc
     1441 cggccgaacg cgccgttcag cggcccctca ccggccagga tgccgatcac ccggtaggtc
     1501 acccgatcgc cggtcccctg catcgtgatc ggggccccca ccgtcagccc gtcctcgttc
     1561 gcgagttgct cggagatcag ggcgctgggc tcggtcggct cgcgcagcag cgaaccggcg
     1621 acgagatgga gatcgtgaag ctgcggctcg gcgacggggt cgatgccgag gaccgtcacc
     1681 ggcgggggca gcgcctggcc cgcgtcgagg ctcggtccga gataggtgcg ccgctggagg
     1741 gccggcgcga tcacctcgac gccgggcgtc tccttgatcg cccggacggt ttccggcgtg
     1801 aggccgcgtt cgccgaaggc ggccacccgg aggtcggccc gaccgaccag gtcgcggacg
     1861 gtgctgttga ccgaggattc gatcccggcg ttggtggcca ggccggcgaa caggaccgcg
     1921 acgccgagcg cgacgccgag cccgctcaac aacgagcgga gggtccgggc gcggaggctt
     1981 cgccaggcga gccgcgtcag ggacacggtc gcgccctaga gcccgagctg ggcgagccgg
     2041 gcgatcagcg gtgtggcctc gtgggtgtcc cgccggccga gctcgatggt ctcgcggatc
     2101 tgcccgtcgc cgacgaccat gacccgatcg gcgtaggccg ccgccttggc gtcgtgggtg
     2161 accagcacga tcgtctggcc gcgttccacg caggaccgct tgagcgcatc gaggatctcg
     2221 gtgccggtcg tgtagtcgag gttgccggtg ggctcatcgg cgaacaggag cgccgggcgg
     2281 gtcacgagcg cgcgcgccac ggccacgcgc tgctgctcgc cggccgacag ctggtcgggc
     2341 ttgtggtgct ccttgccggt caggtcgacg agctcgatga cgtcgcggat gcgatcggcc
     2401 agctcgccct tggtcgggtc gccgccggcg atcgtgaacg gcagcgcgac gttctccacg
     2461 acgtcgagca gcgggatcag gttgaacgac tggaacacga agccggt
//
LOCUS       DATDDI010000305         3665 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_401957, whole genome shotgun sequence.
ACCESSION   DATDDI010000305 DATDDI010000000
VERSION     DATDDI010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401957"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1484
                     /locus_tag="VIU37_04335"
     CDS             <1..1484
                     /locus_tag="VIU37_04335"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF004837.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase"
                     /protein_id="HEY6013204.1"
                     /translation="FATRTHRLANALVELGVSAGDRVSFVTFNTHQLLEAYYGVIEAG
                     AVLNPINIRLAPHEIAYILDHAASKVVFYHRDFAPLVEAIRPQLATRPTLVVLDGEPG
                     GPADHEFEALLATGSPDPLHPDIDENGLAELFYTSGTTGLPKGVAMTHRELYLHAMSA
                     QVGLGFTEEDVVLHVVPLFHVNGWGVPHFLTMIGGQHVMLRRFDPTSLMTMVERHRVT
                     RLLGVPTIFNAVLHSRERARFDLSSLKQLIIGGAPASPDLVKALEAEIGAQAMVGYGL
                     TETSPIITLAEPRRVLTDSEPPERRQERLSMTGWAIPGVRIRVVEADGVDVRPDGQQI
                     GEIVVRGNTVMDGYYRDPEATQETIRDGWLHTGDMATIDEAGYVLIKDRSKDIIISAG
                     ENISSVEIEVVLGAHPAVLESAVVAAPDDKRGEVPIGIVVLKPDVEVTPKELRAWCRE
                     RLAAHKVPREIHFRDALPKGGTGKILKAELREPFWAGLASRVH"
     gene            complement(1498..1860)
                     /locus_tag="VIU37_04340"
     CDS             complement(1498..1860)
                     /locus_tag="VIU37_04340"
                     /inference="COORDINATES: protein motif:HMM:NF025062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEY6013205.1"
                     /translation="MNAAEISKAIAAHSAWKHRLANAIATGSDASTPDKVRTDNLCDF
                     GKWLYSADLSMRADPHYAGVKAAHAAFHVAASEVLALAIAGKKADAEKAMASGSVFLT
                     ASVKVTSAMMTWQAALAS"
     gene            2096..2656
                     /locus_tag="VIU37_04345"
     CDS             2096..2656
                     /locus_tag="VIU37_04345"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6013206.1"
                     /translation="MQSTPALGIARTADTHPDRHLLRARDLVDAHYSEPLDVADLAGV
                     AGLSRSRFSAEFRRAFGESPHVYLLTRRLERAAALLRTTDYNVADICMTVGLSSVGSF
                     TTSFRRMYGQTPTAYRASGPPASLLARIPACVVHAYSRPQNRTFREDDRVASSIALTS
                     SSNDAARDGGPDDQDRQRATVGARPG"
     gene            2610..3032
                     /locus_tag="VIU37_04350"
     CDS             2610..3032
                     /locus_tag="VIU37_04350"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013207.1"
                     /translation="MIRIASAQLWVRDQDEALDFWTRKVGMEVTSDVTVPEMGNFRWL
                     AVSPPGQPDIAIVLMAIPGAPVMDGATADDVRSLMSRGFAGTVFLTTDDCRRSYEELR
                     ARGVEFSEEPEDRPYGVDAGFHDPSGNSVRLTQVRPMA"
     gene            complement(3063..3434)
                     /locus_tag="VIU37_04355"
     CDS             complement(3063..3434)
                     /locus_tag="VIU37_04355"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013208.1"
                     /translation="MIGATAVVATIPVSDLDRARTYYGETLGLTILWENAASIRFRCG
                     DASELSTFRRPGTATEHTLAHFEVADVEATVRELVGKGVEFVDYADGPLRTTGHIAQL
                     GPARGAWFRDPDGNFLGLRQG"
BASE COUNT          550 a         1300 c         1262 g          553 t
ORIGIN      
        1 ccttcgcgac ccggacccat cgcctcgcga acgccctcgt cgagctcggg gtgagcgccg
       61 gggatcgcgt ctcgttcgtc acgttcaaca cgcaccagct gctcgaggcg tactacggcg
      121 ttatcgaggc cggcgccgtg ctcaacccga tcaacattcg gctggccccg cacgagatcg
      181 cctacatcct cgatcacgcc gcatcgaaag tcgtcttcta tcaccgcgac ttcgcgccgc
      241 tggtcgaggc gatccgcccg cagctggcga cccgcccgac gctcgtggtc ctcgacggcg
      301 agcccggggg gccggcggat cacgaattcg aggcgctgct cgcgaccggg tcccccgacc
      361 cgctccaccc cgacatcgac gagaacgggc tggccgagct cttctacacc agcggcacca
      421 ccgggctgcc caagggcgtc gccatgaccc accgcgagct ctatctccac gcgatgtccg
      481 cccaggtcgg actgggcttc acggaggagg acgtggttct ccatgtcgtc ccgctcttcc
      541 acgtcaacgg ctggggcgtc ccgcacttcc tgacgatgat cggcggacag cacgtcatgc
      601 tccgccgctt cgatccgacc tcgttgatga cgatggtcga acgccaccgg gtcacccggc
      661 tcctcggcgt tccgacgatc ttcaacgcgg tgctccacag ccgcgagcgg gcgcgcttcg
      721 acctgtcgag cctcaagcag ctgatcatcg gcggcgctcc ggcgtcgccg gatctcgtca
      781 aggctctgga ggcggagatc ggcgcgcagg cgatggtcgg ctacggcctg accgagacgt
      841 cgccgatcat caccctggcc gagccgcgac gggtgctcac cgacagcgaa ccgcccgagc
      901 gccgccagga gcgcctgtcg atgaccggct gggcgatccc gggtgtccgg atccgggtgg
      961 tcgaggccga cggcgtcgac gtgcgccccg acggccagca gatcggcgag atcgtcgtcc
     1021 gcggcaacac cgtgatggac ggctactacc gcgatcctga ggcgacccag gagacgatcc
     1081 gggacggctg gctgcatacc ggcgacatgg ccacgatcga cgaggccggc tacgtgctga
     1141 tcaaggatcg gtcaaaggac atcatcatca gcgccgggga gaacatctcg tcggtcgaga
     1201 tcgaggtcgt gctgggcgcc catccggccg tgctcgagag cgccgtcgtg gccgctcccg
     1261 acgacaagcg aggcgaggtc ccgatcggca tcgtcgtcct caagcccgac gtcgaggtga
     1321 ctcccaagga gctgcgggcg tggtgccgcg agcggctggc ggcgcacaag gtgccgcgtg
     1381 agatccattt ccgcgacgcc ctcccgaagg gcggcacggg gaagatcctc aaggccgagc
     1441 ttcgcgagcc cttctgggca gggctggcgt cgcgcgtcca ctgacccacc gccggactca
     1501 ggaggccagg gccgcctgcc acgtcatcat ggccgaggtg accttcaccg acgccgtgag
     1561 gaagacgctc ccggaggcca tcgccttctc ggcgtccgcc ttcttgccgg cgatggccag
     1621 cgcgagcacc tccgacgcgg cgacgtggaa ggccgcatgg gcggccttga ccccggcgta
     1681 gtgggggtcg gcccgcatcg agagatcggc cgagtacagc cacttcccga aatcgcacag
     1741 gttgtcggtc cggaccttgt ccggcgtcga cgcgtcggaa ccggtcgcga tggcgttggc
     1801 gagccgatgc ttccacgcgc tgtgggcggc gatggccttg gagatctccg cggcgttcac
     1861 tggcatggat ccttgctcct gctggctggc gtgcgtgcca ctcgtcgtgc agccccttcc
     1921 gggatgccag gcaagtaggt aaccgccagg ccggcctggc aatcggggag caccctgcaa
     1981 ttgggcgctg ccgcccgagc tcagtcgccg acggcgaccc cgctccggcc acggcccggc
     2041 cgcgccggac ggccgcgtgg tcgccaaggt cggcgcggtc cgggatactg cgcgcgtgca
     2101 atcgacgcca gccctcggga tcgcacggac ggcagacacc cacccggatc ggcatctgct
     2161 gcgcgcgagg gacctcgtgg acgcgcacta ctccgagccg ctcgacgttg ccgacctggc
     2221 cggggtcgcc ggcctctccc gcagccgctt cagcgcggag ttccgccggg ccttcggcga
     2281 gtcaccacac gtctatctgc tgacccgccg gctcgagcgg gcggcggccc tccttcgcac
     2341 cacggactac aacgtcgcgg acatctgcat gaccgtcggc ctgtcgagcg tcggttcgtt
     2401 cacgacgagc ttccggagga tgtacgggca gacgccgacg gcctaccggg cgagcggccc
     2461 cccggcctcg ctgctggcga ggatccctgc ctgcgtcgtc cacgcctaca gccggccgca
     2521 gaaccggacg tttcgagaag acgatcgggt ggcatcgtcc atagccttga cctcgtcgtc
     2581 caacgatgca gctcgagacg gaggccccga tgatcaggat cgccagcgcg caactgtggg
     2641 tgcgcgacca ggatgaagcg ctcgacttct ggacccgcaa ggtcgggatg gaagtcacgt
     2701 ccgatgtgac cgtccccgag atgggcaact tccgctggct ggcggtgtcg ccgcccggcc
     2761 agcccgatat cgccatcgtg ctgatggcga tccccggcgc ccccgtcatg gacggtgcga
     2821 ccgccgacga cgtgcggagc ctgatgtcgc ggggattcgc cggcacggtg ttcctgacga
     2881 ccgacgactg ccgccgctcc tacgaggagc tgcgggcgcg gggcgtcgag ttcagcgagg
     2941 agccggagga ccggccgtac ggcgtggatg ccgggttcca cgacccgtcg ggcaactccg
     3001 tgaggctgac ccaggtccgc ccgatggcgt gatccggggg gccgagggcc ggccctcggc
     3061 ggtcagccct ggcggaggcc caggaagttg ccgtccgggt cacggaacca ggcgccgcgg
     3121 gctggtccga gctgggcgat atgcccggtc gtccggagcg gcccgtcggc atagtcgacg
     3181 aactcgacgc ccttgcctac gagctcgcga accgtcgcct cgacgtcggc cacctcgaag
     3241 tgggcgagcg tgtgctccgt ggccgtgccg ggccggcgga aggtcgacag ctcgctggca
     3301 tcaccgcagc ggaagcggat cgaggccgcg ttctcccaaa ggatggtcag gccgagcgtc
     3361 tcgccgtagt aggtcctggc tcggtcaagg tcgctcaccg ggatggtggc cacgaccgcc
     3421 gttgcaccga tcatcgtcat gtcccctgat gaatgcgtac gggcggccgc gccgggcacg
     3481 gccgcccgcg gccgctcagt aggctcgggc ctcggactcg ttggcgatcc agacctgcgg
     3541 tgtccccacc accccgccgc gtgccatcgc ctccgggagt gacggatcct ggctgaaggc
     3601 ccgggcaccg tcgagggtgg cgaactcgtt gacgatgacg accgagttcg ggtcggacag
     3661 gtcgc
//
LOCUS       DATDDI010000306         1887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_443354, whole genome shotgun sequence.
ACCESSION   DATDDI010000306 DATDDI010000000
VERSION     DATDDI010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443354"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..>1887)
                     /locus_tag="VIU37_04360"
     CDS             complement(273..>1887)
                     /locus_tag="VIU37_04360"
                     /inference="COORDINATES: protein motif:HMM:NF022449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HEY6013209.1"
                     /translation="IHFLGGATTVTGSQFLLTTERATVLIDCGMFQGSPNESIRNRIP
                     FAFEPGSLDAVLLTHAHLDHCGLLPLLVKEGYAGPIHATAGTIELATLVLLDSGKLHE
                     EFAKREARWEKRHPDRVAEDDRAEEAAYEAALAIARSEDEPGAAAAAGDTEHVPTTIE
                     PAAPPTWPRDPEADLRAQPPHLAIDLDEPLYTARDAEGTLSHFRPVRYGEEIEVAAGI
                     SATFVDAGHILGSAIIRLRIQGDGGEERVIVFSGDLGRPGTPILRDPTPMDGADYVLV
                     ESTYGGREHEPEAEAIRVLAETIRMVADAGGVLLVPSFAIGRTQEVVWELDRLIERGE
                     IPLLPLYLDSPMASKASDVYRHHPEDYDEETASLLRSGASPLDYPKQIVVNDVKQSEA
                     IARAPRPYMIVASNGMLTGGRVVGHLRNLIDDPKATILFVGYQGEGTLGAHLQAGARE
                     VKLDGQVRRVRCQVRSISGFSAHADESELLDWLGHFIAGKQPGEPGYPRRVFLVHGDP
                     EAQIAMEPKVRDLGFATHVPHWHERVTLD"
BASE COUNT          260 a          651 c          693 g          283 t
ORIGIN      
        1 gatggtccgg catgggattc ccaatgcctc ccgcgttccg cctgatgcgc cccggcgttc
       61 gatcgcccgg caaagcggaa ccggcgcagc ggccccagaa atgggtgacg cccgaaggcg
      121 gatgtctccg ccatcgggca tcaggccgaa tcccccggaa tgaggccacg gagaccgtac
      181 caaagtcctg ggtccagcgc aagagtccgg ccgtcagtac gtggtgctgc ccggcaccga
      241 cgggcgtgcc ggtgggcggg cccaggctcg ggtcagtcca gggtgacccg ctcgtgccag
      301 tgcgggacgt gcgtcgcgaa acccaggtcg cgcaccttcg gctccatcgc gatctgcgcc
      361 tccgggtcgc cgtggacgag gaagacccgg cgagggtagc cgggttcgcc cggctgcttg
      421 ccggcgatga agtgaccgag ccagtcgagg agctcgctct cgtcggcgtg cgcggaaaag
      481 ccgctgatcg agcggacctg gcaccggacc cggcggacct ggccgtccag cttgacctcg
      541 cgggcccccg cctgcaggtg cgcaccgagc gttccctcgc cctggtagcc gacgaacagg
      601 atcgtcgcct tcgggtcgtc gatcaggttg cgcaggtggc cgacgacccg gccgccggtc
      661 agcatgccgt tcgaggcgac gatcatgtac ggccgcggcg ccctggcgat cgcctccgac
      721 tgcttgacgt cgttgacgac gatctgcttc gggtagtcga gcgggctcgc cccggaccgg
      781 agcaggctcg cggtctcctc gtcgtagtcc tcgggatggt gccggtagac gtcggacgcc
      841 ttcgaggcca tcggcgagtc caggtagagc ggcaggagcg ggatctcgcc acgctcgatc
      901 agccggtcga gctcccacac gacctcctgg gtccgcccga tcgcgaacga cgggacgagg
      961 agcacgccgc cggcgtcggc gaccatccgg atcgtctcgg ccagcacgcg gatcgcctcc
     1021 gcctcgggct cgtgctcgcg cccgccgtag gtcgattcga cgaggacgta gtcggcgccg
     1081 tccatcggcg tcgggtcgcg gaggatcggg gtgccggggc ggcccaggtc cccgctgaac
     1141 acgatgaccc gctcctcgcc gccgtcgccc tggatccgca gccggatgat ggcggaaccc
     1201 aggatgtgcc cggcgtcgac gaacgtggcc gatatcccgg cggccacctc gatctcctcg
     1261 ccatagcgga ccgggcggaa gtggctcagc gtcccctccg catcccgcgc ggtgtagagc
     1321 ggctcgtcca ggtcgatcgc gagatggggc ggctgggcgc gaaggtcggc ctccgggtcg
     1381 cgcggccagg tgggcggtgc ggccggctcg atggtcgtgg ggacgtgctc ggtatcgccc
     1441 gcggcggcgg ccgcaccggg ttcgtcctcg gaccgggcga tcgcgagcgc ggcctcgtag
     1501 gccgcctcct ccgcccggtc gtcctcggca acgcggtcgg ggtgtcgctt ctcccagcgg
     1561 gcctcgcgct tggcgaactc ctcgtggagc ttgcccgagt cgaggaggac gagcgtcgcg
     1621 agctcgatcg tgccggcggt ggcgtggatc ggcccggcat agccctcctt gacgagcagc
     1681 gggagcagcc cgcagtggtc caggtgcgca tgggtcagca ggaccgcgtc gaggctgccc
     1741 ggctcgaacg cgaacgggat ccggttgcgg atcgactcgt tcgggctgcc ctggaacatc
     1801 ccgcagtcga tgagcaccgt cgcccgttcg gtggtaagca ggaattgcga gccggtgacg
     1861 gtcgtcgcgc caccgaggaa atggatg
//
LOCUS       DATDDI010000307         1849 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_152357, whole genome shotgun sequence.
ACCESSION   DATDDI010000307 DATDDI010000000
VERSION     DATDDI010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152357"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VIU37_04365"
     CDS             complement(<1..553)
                     /locus_tag="VIU37_04365"
                     /inference="COORDINATES: protein motif:HMM:NF023853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase III"
                     /protein_id="HEY6013210.1"
                     /translation="MTARTTAISGIAAHRVAKTQDYLESAGADIYGQYVFDDVAQRKY
                     LAKPIYQKLRQTIDGHEPFDLAIVDAVAHGVKEWALGQGATHYTHWFVPMTGSTAEKH
                     DSFLTPTGDGRTIAEFSGKNLVQGEPDASSFPSGGIRATFEARGYTAWDVTSPIFLQV
                     EPNGVTLTIPTAYVSFTGEALDHK"
     gene            complement(732..>1849)
                     /locus_tag="VIU37_04370"
     CDS             complement(732..>1849)
                     /locus_tag="VIU37_04370"
                     /inference="COORDINATES: protein motif:HMM:NF016995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HEY6013211.1"
                     /translation="TLDRTPKLWRGVREVRVEQPEPFFDPRLPDRAAMTGLTAEAVQR
                     VLRRNGLHVREATAADGRRFLYGDRHQYTKLATLLTHAGLVTFLVAAAVTSRLGDEQG
                     LVVPEGSSLTVQPIGTPGLLLVKNLDFEAPGFDTGQAADFTTDLAVYQDGREIARKTI
                     RVNDPLSVAGYTFHQNGFGPAPYLVVRDTAGRPLWDGAVPLTDAAAGSPYGIQGVPGT
                     DIGLQLLLRKEADGTGVVLVLPYRVVGTYPDGTPIPQNYAPLALAKGETGVASDARLS
                     IELRDVGEYTLLIAKRDPGQGLVWLAFGLLIAGITITFYRPRRRVWTRLTPDGRLGIV
                     WRSDRYVDVEHEFGRLLDQLVAARDPERPAPSGPAPG"
BASE COUNT          251 a          637 c          683 g          278 t
ORIGIN      
        1 tcttgtggtc gagcgcctcg cccgtgaacg agacgtaggc ggtcgggatc gtgagcgtga
       61 cgccgttcgg ctcgacctgc aggaagatcg gcgaggtgac gtcccaggcg gtgtagccgc
      121 gcgcctcgaa cgtggcgcgg ataccacccg acgggaagga gctcgcgtcc ggctcgccct
      181 ggaccaggtt cttgccagag aactcggcga tcgtccggcc gtcgccggtc ggggtcagga
      241 acgagtcgtg cttctcggcg gtcgagccgg tcatcggtac gaaccagtgc gtgtagtgcg
      301 tggcgccctg gcccagggcc cactccttca cgccgtgcgc gaccgcgtcc acgatcgcca
      361 ggtcgaacgg ctcgtggccg tcgatcgtct gccggagctt ctggtagatc ggcttggcca
      421 ggtacttgcg ctgggccacg tcgtcgaaga cgtactggcc gtagatgtcc gcgccggcgc
      481 tctccaggta gtcctgcgtc ttggcgaccc ggtgcgcggc gatccccgag atggcagtcg
      541 ttcgagcggt catgggtctc ctgtctgtgc ggtcggctcc ggcgtccgtc cgactcgggg
      601 acggggcaga cggcaccacg gttcggctgc ggaaccgcct gtcgtgacga tagcagcggg
      661 ccaggttgcg gttcagcacc gacccgagac ccgcaacgtt gcggctggcg gacgaccgcc
      721 gccgcgggcg atcagcccgg tgccggaccg ctcggcgccg gtcgctccgg gtcccgggcg
      781 gccacgagct ggtcgagcag gcggccgaac tcgtgctcga cgtcgacgta ccgatccgac
      841 cgccagacga tcccgaggcg accgtccggc gtcagcctgg tccagacgcg ccggcgcggc
      901 cggtagaacg tgatcgtgat cccggcgatc agcagcccga acgcgagcca gacgaggccc
      961 tggccaggat cgcgcttggc gatgagcagg gtgtactcgc cgacgtcgcg cagctcgatg
     1021 ctcagtctgg cgtccgacgc gacgccggtc tcgcccttgg ccagcgccag cggcgcgtag
     1081 ttctgcggga tcggcgtgcc gtccgggtag gtaccgacca cccggtatgg caggaccagg
     1141 acgacacccg tgccgtcggc ctccttccgg agcaggagct gcagcccgat gtcggtcccg
     1201 ggcacgccct ggatcccgta cggcgagccg gcggcggcgt cggtcagggg cacggcgccg
     1261 tcccacagcg gccggccggc cgtgtcgcgg accaccaggt agggggccgg cccgaacccg
     1321 ttctggtgga acgtgtagcc ggccaccgac agcggatcgt tgacccggat ggtcttgcgg
     1381 gcgatctcgc ggccgtcctg gtagacggcc aggtcggtcg tgaagtcggc ggcctggccg
     1441 gtgtcgaagc cgggcgcctc gaagtccagg ttcttgacca gcagcagccc gggcgtcccg
     1501 atcggctgga cggtgagcga gctgccctcc ggtacgacca ggccctgctc gtcgccgagc
     1561 cgcgatgtga ccgccgccgc gaccaggaag gtgaccaggc cggcatgcgt gaggagcgtc
     1621 gcgagcttgg tgtactgatg ccggtcgccg tacaggaatc gccggccgtc ggcggcggtc
     1681 gcctcccgca cgtggagtcc gttccggcgc agcacgcgct gaacggcctc ggcggtcagc
     1741 ccggtcatcg ccgcgcggtc cgggaggcgc ggatcgaaga acggctctgg ctgctcgacg
     1801 cgcacctcgc gaacgccccg ccacagcttc ggcgtccggt ccagggtgc
//
LOCUS       DATDDI010000308         1871 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_131586, whole genome shotgun sequence.
ACCESSION   DATDDI010000308 DATDDI010000000
VERSION     DATDDI010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131586"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VIU37_04375"
     CDS             complement(<1..482)
                     /locus_tag="VIU37_04375"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY6013212.1"
                     /translation="MTSEASDTLDAMWVRGGAAELASDEAWLRAMVEVESALAAASAV
                     AGFIPHADASRIESVLSELVLDTAAIAREASATGTPIVPLVERIRAAVGPEVAGSVHR
                     GATSQDILDSATMLIARRALTPILEDLLGASEAAAGLAALHRTTPIAGRTLLQRAVPT
                     T"
     gene            complement(472..1020)
                     /gene="pcaG"
                     /locus_tag="VIU37_04380"
     CDS             complement(472..1020)
                     /gene="pcaG"
                     /locus_tag="VIU37_04380"
                     /EC_number="1.13.11.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018578 - protocatechuate 3,4-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0046278 - 3,4-dihydroxybenzoate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protocatechuate 3,4-dioxygenase subunit alpha"
                     /protein_id="HEY6013213.1"
                     /translation="MDTGTAQLPTPSQTVGPFFAVALPWPEGPFVVDAQSDGAFWIRG
                     VVTDGAGEPIPDALIETWQADPDGRFPERPDAPFRGFGRCPTDATGTYGICTVRPGAV
                     PGPDGAPQAPHIDVAVFMRGLLRPVITRIYLPDDPATETDPLLASIPERDRKTMIATR
                     TDDGYRFDIRLQGEGETAFFDL"
     gene            1272..>1871
                     /locus_tag="VIU37_04385"
     CDS             1272..>1871
                     /locus_tag="VIU37_04385"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6013214.1"
                     /translation="MSEQELREGSRLSRRAVLKAAALGTMATGISAFLAACGVKTSSS
                     GAASSAASAGSSVAPSGGASVAPSAAEAIPFKIGFVSPQTGPAAGFGEPDPYVIGLVQ
                     DKLNQGFQAGGKNYAITIVQKDGQSDPAKAAQVANDLITTDKVDLILATSTPENNNPI
                     ADAAEAAGVPMIATVEPWEAFVFPRQKDPAKPVPFKFTYI"
BASE COUNT          294 a          642 c          664 g          271 t
ORIGIN      
        1 gtcgtgggga ccgcgcgctg caggagggtg cggccggcga tcggggtcgt ccgatggagg
       61 gccgcgagcc cggcagccgc ctccgacgcg ccgaggagat cctcgagaat cggcgtcagc
      121 gcgcgacggg cgatcaacat cgtcgcgctg tccaggatgt cctggctggt ggcaccccgg
      181 tggaccgacc cggcgacttc cgggccgacg gcggcgcgga tgcgttcgac gagcggcacg
      241 atcggggtac cggtggccga tgcctcgcgg gcgatcgcgg cggtgtcgag gacgagctcg
      301 ctcaggacgg actcgatccg gctggcgtcc gcgtgcggga tgaatccggc gaccgcgctc
      361 gccgcggcca gcgcgctctc gacctcgacc atcgcgcgga gccaggcctc gtccgacgcc
      421 agctcggccg ccccaccccg aacccacatg gcatcgagcg tgtcgctcgc ctcagaggtc
      481 aaagaaggcg gtctcccctt cgccctggag gcggatgtcg aaccgatatc cgtcgtcggt
      541 gcgggtcgcg atcatcgtct tccggtccct ttcgggaatc gaggccagca gcgggtcggt
      601 ctcggtcgcg gggtcgtccg gaaggtagat ccgggtgatg accggccgca gcagcccgcg
      661 catgaagacc gcgacgtcga tgtggggcgc ctgaggcgcg ccgtcggggc ccggaaccgc
      721 gcctggcctc acggtgcaga tgccatacgt cccggtggcg tcggtggggc atcgcccgaa
      781 cccgcgaaac ggggcgtccg gtcgctcggg gaagcgcccg tcgggatcgg cctgccacgt
      841 ctcgatcagg gcatcgggga tcggttcacc ggcgccgtcg gtgacgacgc cgcggatcca
      901 gaaggccccg tcgctctgcg cgtcgacgac gaacgggcct tccggccagg ggagcgccac
      961 cgcgaagaac ggaccaacgg tctgcgaggg cgtcggcagc tgtgcggtgc ccgtatccat
     1021 ggtgtctccg tgtcgatgct gtcggtcgac ccgcaccgta gtgtgacagc ccccttgcca
     1081 caaggattgc gtccactgag tggacacatg ccttgcattg ccgagtgggc ttccataggg
     1141 tccaacggac catcgccaaa tgggccgaat ggcacttgca ttgcgtgcaa tccccgcccc
     1201 gtgcgcctgc acgcaggcca ccggaagttg ccgttgggtc gctggagcgt gctcgaggag
     1261 gagaacaacc gatgtccgag caggagctaa gggaaggctc acgtctgtcg cgacgggcgg
     1321 tcctgaaagc ggcagccctc gggacgatgg cgaccggcat ttcggccttc ctggccgcct
     1381 gcggggtcaa gacgtccagc tccggcgcag ccagctcggc cgcctcggcc ggctcgagcg
     1441 tggccccgag cggcggggcg agcgtggccc catcggccgc cgaggcgatc ccattcaaga
     1501 tcggcttcgt cagcccgcag acgggcccgg cggccggctt cggcgagccg gacccgtacg
     1561 tcatcggtct cgttcaggac aagctcaacc agggcttcca ggcgggtggc aagaactacg
     1621 cgatcacgat cgtccagaaa gatggccagt ccgacccggc caaggccgcc caggtcgcca
     1681 acgacctgat caccaccgac aaggtcgacc tgatcctcgc gacctcgacg cccgagaaca
     1741 acaatccgat cgccgatgcg gccgaggccg cgggggtgcc gatgatcgcc acggttgagc
     1801 cctgggaggc gttcgtcttc ccgcgccaga aggacccggc gaagccggtg cccttcaagt
     1861 tcacctacat c
//
LOCUS       DATDDI010000309         1539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_69190, whole genome shotgun sequence.
ACCESSION   DATDDI010000309 DATDDI010000000
VERSION     DATDDI010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69190"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VIU37_04390"
     CDS             complement(<1..366)
                     /locus_tag="VIU37_04390"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF017026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6013215.1"
                     /translation="MPEPEPADEPAARYDALAGGYARHWGPVIQPAAIALLDRLDGQP
                     ARGTRVLDLGTGTGTLAVEALARWPWLRVTGVDPSRPMLDLAEAAVTRAVVAGAVAPG
                     EQPGPPFTAVAAFADELPFE"
     gene            563..964
                     /locus_tag="VIU37_04395"
     CDS             563..964
                     /locus_tag="VIU37_04395"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6013216.1"
                     /translation="MQRILLAYDGGEPARRALDTTIELSKLTGATVAVVSVVPFHPGR
                     IGADPWDSTEDHAQELIDARRTLHEAGIEAELLEPIGDPAQRIEEVADKGNYDTIVIG
                     SRGLSAVGRVLQGSVSSHVATHAKSTVIVAR"
     gene            complement(1031..1171)
                     /locus_tag="VIU37_04400"
     CDS             complement(1031..1171)
                     /locus_tag="VIU37_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013217.1"
                     /translation="MPAKTEKQRRFMGAELERKREGKKTQTGMSEKELEKMASKPHAK
                     KG"
     gene            1270..>1539
                     /locus_tag="VIU37_04405"
     CDS             1270..>1539
                     /locus_tag="VIU37_04405"
                     /inference="COORDINATES: protein motif:HMM:NF016365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 family protein"
                     /protein_id="HEY6013218.1"
                     /translation="MFLSGTVLNALTIVIGATAGLPVAGRFSDRLRESLTIGIGVFTL
                     GIGASMTLPIFSDPAAAVGDSLVVLTSLLVGVVVGEWLRLQDRLEA"
BASE COUNT          185 a          572 c          555 g          227 t
ORIGIN      
        1 ctcgaacggc agctcgtcgg cgaaggccgc gacggccgtg aacggcggcc cgggttgctc
       61 gcccggcgcc acggcccccg cgacgacggc ccgcgtgacg gccgcttctg cgaggtcgag
      121 catcggccgc gacgggtcca cgcccgtgac ccggagccac ggccagcgag ccagcgcctc
      181 gaccgcgagc gtgccggttc cggtcccgag atcgagcacg cgcgtcccgc gggccggctg
      241 cccgtcgagc cgatccagga gcgcgatcgc cgccggctgg atgaccgggc cccaatgccg
      301 ggcgtagccg ccggccaggg cgtcgtagcg tgccgccggc tcgtcggcgg gctcgggctc
      361 gggcatcggg cggatggtac gaccgaggcc cgtgcgcccc gcacccgtgc cgcgtcggga
      421 tggctggccg tgatcggtcg gtccggaccg ccgcgatcgg gccggtcggc cgctgttccg
      481 gccgcggttc gagccgaggc tggagcctgg agcggtcgac ccgcggtggc cgcgctcccc
      541 gcgctcgaac aaggagccat cgatgcagcg aatccttctc gcctacgacg gtggcgagcc
      601 cgcccgccgg gccctcgaca ccaccatcga gctgtccaag ctcaccggcg cgaccgtcgc
      661 cgtcgtgagc gtcgtcccgt tccatcccgg ccgcatcggc gccgacccgt gggattccac
      721 cgaggaccac gcccaggagc tgatcgacgc ccgcaggacc ctccacgagg ccggcatcga
      781 ggccgagctc ctggagccga tcggcgatcc ggcgcagcgg atcgaagagg tcgccgacaa
      841 gggcaactac gacacgatcg tgatcgggtc gcgcggcctc agcgcggtcg ggcgcgtgct
      901 ccagggcagc gtctcgagcc acgtcgcgac gcacgccaag tcgacggtca tcgtcgcccg
      961 ctgagcctca cggtggcggc ccgcgggggg cgggccgccg cagtccctgc gccaggtcgc
     1021 cgaggcgcgg tcaacccttc ttggcgtggg gcttgctcgc catcttctcg agctccttct
     1081 cggacatgcc cgtctgggtc ttcttgccct cgcgcttgcg ctcgagctcg gcgcccatga
     1141 agcggcgctg cttctcggtc ttggccggca tcggagcctc ctttccggtc cgatcgaccg
     1201 tggcgggcgt gacgtgacag ccgcatctcc gctggacgga caggcgtgtg gcgctcctac
     1261 catgcggcga tgttcctcag cgggaccgtc ctcaacgcgc tgacgatcgt cattggcgca
     1321 acggcggggc tgcccgtggc cggccggttc tcggatcgcc tccgggaatc gctcaccatc
     1381 gggatcggcg tgttcacgct cgggatcggc gcgtcgatga cgctgccgat cttcagcgat
     1441 cccgccgcgg ccgtcggcga ttcgctcgtc gtgctgacga gcctgctcgt cggcgtggtc
     1501 gtcggcgagt ggcttcggct gcaggaccgg ctcgaggcg
//
LOCUS       DATDDI010000310         3053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_27485, whole genome shotgun sequence.
ACCESSION   DATDDI010000310 DATDDI010000000
VERSION     DATDDI010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27485"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..203)
                     /locus_tag="VIU37_04410"
     CDS             complement(<1..203)
                     /locus_tag="VIU37_04410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013219.1"
                     /translation="MDPRIVLPAVTSVLALVFAVALFDQWRERRGGFQLIWAFGMLFY
                     GVGAGCEALGAFSGWNELLYRTW"
     gene            complement(205..837)
                     /locus_tag="VIU37_04415"
     CDS             complement(205..837)
                     /locus_tag="VIU37_04415"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013220.1"
                     /translation="MPAERWLSLGPASRLVGVDPDTLRRWADDGRVEAFVTPGRHRRF
                     DRRALERLAATGRGETRSLASLGASSERLRRVYRRTYTSDAPARKAAADHAGDRERYR
                     QDGRQLIEALIAHLDADRADEAARRQTEADALALVDAFARRLQAGGMGLAEAIALFVA
                     ARRPFLAELAHLGRRRTLDAARLGDLYADATGLLDRLLLRVVDTYQAAAG"
     gene            complement(1098..1451)
                     /locus_tag="VIU37_04420"
     CDS             complement(1098..1451)
                     /locus_tag="VIU37_04420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013221.1"
                     /translation="MEIMGVQIRTIGRDNGATRCDGCQGIIEGTPWRVNLLDIVAAEA
                     PVAWTQRPAVNPGPFQFHADPACVRRWMAAKGYLFCRRGEVREIMRPVAIPGDEPRLG
                     LCDGIHRDDHEFVPA"
     gene            complement(1531..1722)
                     /locus_tag="VIU37_04425"
     CDS             complement(1531..1722)
                     /locus_tag="VIU37_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6013222.1"
                     /translation="MANTILESECIACAACEPECPNGAISSADNTFVIDPALCDECAA
                     TGGDSACKAVCPVEAIVAA"
     gene            complement(1754..2197)
                     /locus_tag="VIU37_04430"
     CDS             complement(1754..2197)
                     /locus_tag="VIU37_04430"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6013223.1"
                     /translation="MANPLNLPMVTRSLRNLVSRPATRRYPTVVRPPFKGARGTLEFD
                     LESCVLCGLCVRRCPTVALTCNRDERLFAIEQLRCIACGVCVDACNKHSLSLSPNRRP
                     VHTRAEIGTDGRRPGYEEWHKPEPEPAPAAATAAASPGPTEPVPA"
     gene            complement(2199..>3053)
                     /locus_tag="VIU37_04435"
     CDS             complement(2199..>3053)
                     /locus_tag="VIU37_04435"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013224.1"
                     /translation="ALEDIMAVDVPDRARWLRLVWAELSRVQSHLLWLGLGADAFGFE
                     NLLMQCWRMREEVLDVFEQTTGGRIIHSVNRIGGVRRDIADSELTAIVERLDRLAIGF
                     EATARVFRTDPSIRHRLEGVGVLSGDDARRLGAVGPMARASGIPLDTRLLGEHLYDRL
                     EIEPIVETGGDCLARVLVRVREVQQSIGLIHQLVDRMPKGDDLPIDTKVRGMPQGETF
                     VRLEQPRGEVAYYVRANGTKFLERFRARTPTFANIPSMIHLVKGCDLADVPNIVLTID
                     PCISCTER"
BASE COUNT          439 a         1061 c         1136 g          417 t
ORIGIN      
        1 taccaggtcc ggtacaggag ctcgttccag ccactgaagg cgccaagcgc ctcgcagccc
       61 gcgccgaccc cgtagaacag catcccgaac gcccagatca gctggaatcc gccccggcgc
      121 tcgcgccact ggtcgaacag cgccaccgcg aagacgaggg cgagcaccga ggtgacggcc
      181 gggaggacga tccggggatc cacgtcagcc cgccgcggcc tggtaggtgt cgaccacgcg
      241 gagcaggagc cggtcgagca agccggtcgc atcggcatac aggtcgccca gccgtgcggc
      301 gtcgagcgtc cgacggcgtc cgagatgggc cagctcggcg aggaacggtc ggcgagcggc
      361 cacgaacagg gcgatcgcct cggcgaggcc catcccgccc gcctgcaggc gtcgcgcgaa
      421 cgcgtccacg agcgccaagg cgtcggcctc ggtctggcga cgggcggcct cgtccgcccg
      481 gtcggcgtcg agatgcgcga tcagggcctc gatgagttgc cgtccgtcct ggcggtaccg
      541 ttcgcggtcg ccggcatgat cggccgcggc ctttctggcc ggcgcgtcgc tggtgtaggt
      601 ccggcggtag acgcgccgca gccgttccga gctggcaccc aggctggcca gcgagcgcgt
      661 ctcgccccgc ccggtggccg ccagccgctc gagcgcccgg cgatcgaacc ggcggtggcg
      721 gcccggtgtg acgaacgcct cgacgcggcc atcgtcggcc cagcggcgca gggtgtccgg
      781 atcgacgccg acgagccggc tcgcgggacc gagagacagc cagcgttcgg cgggcacgtg
      841 tcggttcgat cgtgtcggac gagcgctgac cgggggaact gacacgtggg cctcgcggga
      901 gggagtgacg acgggccggg cgagcatcgg ggggatacgc tcggagaccg gcccgtcgac
      961 ggtgaaaggc aaccttggaa tctaggtgaa tctaggtacc ggggattcac ccggtgggcc
     1021 gaggataggt cccggatcgc gcgaccgtca agcgtccctc gacggcgcct ccggacggcg
     1081 ccgggcgcaa ctccggatca ggcggggacg aactcgtggt cgtcgcggtg gatcccgtcg
     1141 cacaggccga ggcgcggctc gtcgccgggg atggcgacgg ggcgcatgat ctcgcggacc
     1201 tcgccacggc ggcagaagag gtagcccttc gccgccatcc agcggcgcac gcaggccggg
     1261 tcggcgtgga actggaacgg gcccgggttc accgcgggac gctgcgtcca ggcgaccggc
     1321 gcctcggccg cgacgatgtc cagcaggttc acccgccagg gcgtgccctc gatgatcccc
     1381 tggcagccgt cgcaccgtgt cgccccgttg tcgcgcccga tcgtgcggat ctggacgccc
     1441 atgatctcca tcgcgggcga tggtagcagg gagcgtcgga tggccgtcgc cgcccccggc
     1501 gcgtgaatgc cggcggcacg ccgccgggcg tcaggccgcg acgatcgcct cgaccgggca
     1561 gacggccttg caggccgaat cgccacccgt cgccgcgcac tcgtcgcaca gcgccgggtc
     1621 gatcacgaag gtgttgtccg ccgagctgat cgcaccgttc gggcactcgg gttcgcacgc
     1681 cgcgcaggcg atgcattcgc tttccaggat cgtgttcgcc accgaagagt cctcctgctg
     1741 gttcgggccg ggttcaggcc ggcacgggtt cggtcggtcc ggggctggcg gcggccgtgg
     1801 cggccgctgg cgccggttcg ggttcgggct tgtgccactc ctcgtagccc ggccggcgac
     1861 cgtccgtgcc gatctcggcg cgggtgtgga ccggccgccg gttgggcgac aggctgaggc
     1921 tgtgcttgtt gcaggcgtcc acgcacacgc cgcaggcgat gcagcggagc tgctcgatcg
     1981 cgaacagccg ctcgtcgcgg ttgcaggtga gcgcgaccgt ggggcagcgc cggacacaga
     2041 ggccgcacag cacgcaggat tcgagatcga actcgagcgt cccgcgggcg cccttgaacg
     2101 gcggacggac gacggtcggg tagcgccgcg tggcgggccg ggacaccagg ttgcgcaggc
     2161 tgcgtgtgac catcggcagg ttgagcgggt tggccatctc agcgctccgt gcagctgatg
     2221 caggggtcga tggtcagcac gatgttcggc acgtcggcca ggtcgcagcc cttgaccagg
     2281 tggatcatcg acgggatgtt ggcgaacgtc ggcgtgcgcg cccggaaccg ctcgaggaac
     2341 ttcgtgccgt tcgcccggac gtagtaggcg acctcgccgc gcggctgctc cagccggacg
     2401 aacgtctcgc cctggggcat cccgcgcacc ttcgtgtcga tcgggaggtc gtcgcccttc
     2461 ggcatccggt ccacgagctg gtggatgagc ccgatggact gctggacctc gcgaacgcgc
     2521 acgagcaccc gggcgaggca gtcgccgccg gtctcgacga tcggttcgat ctcgagccgg
     2581 tcgtacaggt gctcgccgag cagccgggtg tcgagcggga tcccggatgc acgggccatc
     2641 ggcccgacgg caccgagccg gcgggcgtcg tcgccactga gcacgccgac cccctccagg
     2701 cgatgccgga tcgacgggtc ggtccggaag accctggccg tcgcctcgaa gccgatggcc
     2761 aggcggtcga gccgctcgac gatcgccgtc aactccgagt cggcgatgtc ccggcgcacg
     2821 ccaccgatgc gattgaccga gtggatgatc cggccgccgg tcgtctgctc gaacacgtcg
     2881 aggacttcct cgcgcatccg ccagcactgc atcagcaggt tctcgaaccc gaaggcgtcc
     2941 gcgccgaggc cgagccacag gaggtggctc tggacccggg acagctcggc ccagacgagc
     3001 cgcagccagc gcgcccggtc ggggacgtcc accgccatga tgtcctcgag ggc
//
LOCUS       DATDDI010000311         4018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_443472, whole genome shotgun sequence.
ACCESSION   DATDDI010000311 DATDDI010000000
VERSION     DATDDI010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443472"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VIU37_04440"
     CDS             complement(<1..417)
                     /locus_tag="VIU37_04440"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY6013225.1"
                     /translation="MTDRQGRDLPLDAHLHTDLSPDSDVPIDDYAAAALERGIAELAI
                     TDHVDFEPGAPAFGYASFADRERVVREAAERWGPRGVTIRFGVELTYDRSWESDIRDH
                     LARHAYDFTIGSVHDRVESVYHPSRVRGWVAGRSLAE"
     gene            complement(446..1663)
                     /locus_tag="VIU37_04445"
     CDS             complement(446..1663)
                     /locus_tag="VIU37_04445"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF005394.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008890 - glycine C-acetyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HEY6013226.1"
                     /translation="MTQLPDPLAFLADEVAALRERHLYRPLRVMSSAQGPIVSVDDRR
                     LISLSSNDYLGLTHHPRVCRAAEQAVREFGAGSGAVRTIAGTMTMHEALEAELAAFKE
                     TPAVLTFQSGFTANTGVIPTITGETDLIVSDALNHASIIDGMRLSKAPRQVFPHGDVD
                     ALREILREATEQGRPGGGAYHLILVVTDGVFSMDGDIARLPEIVEAAEAFGAAVMVDD
                     AHASGVLGRNGRGSVDHFGLHGRVAIQVGTLSKAVGSLGGYVAGSIALREILTQRARP
                     FLFSTSHPPAVVAACREAIRVMQDEPELQDRLWANTRRFKAELTRLGFDTGHSETPIT
                     PVMMGDPETAGRFSDRLIEEGVFVQPVVFPTVAMDKARLRTIVTAAHADEQLDAVLAA
                     FDRVGHELGLVSG"
     gene            complement(1660..2688)
                     /gene="tdh"
                     /locus_tag="VIU37_04450"
     CDS             complement(1660..2688)
                     /gene="tdh"
                     /locus_tag="VIU37_04450"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008743 - L-threonine 3-dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HEY6013227.1"
                     /translation="MLALVKARPEAGLELRDVPIPEIGINDVLIRVHKTGICGTDLHI
                     EAWDPWAAATIKPPLVVGHEFVGEVADIGSNVADLHPGDIVSGEGHVVCGRCRHCRAG
                     RYHLCANTQGLGVNRDGAFAEFVALPVTNVWHHWPGIDQDVMAVFDPFGNAVHTALAF
                     PVLGEDVLVVGAGPIGLMATAVVRHAGARYVVVSEPNAYRRGLAARMGATRVTDPGAE
                     TLADVQADLQMVEGFDVVLEMSGNAGALRDALSNMAHGGSMAILGIPTAEIPIDVNQI
                     VFKQLTIQGIYGREMYETWYKMSVMLTSGLDISPAITHRFGFREYAAAFAAARAGDSG
                     KVIMDWTS"
     gene            complement(2720..3472)
                     /locus_tag="VIU37_04455"
     CDS             complement(2720..3472)
                     /locus_tag="VIU37_04455"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY6013228.1"
                     /translation="MRQTSYVPRPGKIICVGLNYRGHVAEGGRGLPVRPLLFAKFGNA
                     VIGDGDPIVRPEGTHALDLEVELGVVIGTRAHRVPEARALDHVAGYVVVNDVSARDWQ
                     GTKQALREGETGDGQWLRAKGSDTFLPVGPVFVGADEIPDPQALRLQSWRIPGSGPDQ
                     GRLVPMQDGSTADMIWSVAELIEYISRVITLEPGDLVVTGTPSGVGVFRDPPVFLEPG
                     DRARCEIEQIGIVENPVVDWSDVTGDDGRAHH"
     gene            complement(3486..>4018)
                     /locus_tag="VIU37_04460"
     CDS             complement(3486..>4018)
                     /locus_tag="VIU37_04460"
                     /inference="COORDINATES: protein motif:HMM:NF022747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3105 domain-containing protein"
                     /protein_id="HEY6013229.1"
                     /translation="HHVSVGEKVTYTYCPPASGAHDNASGAGPIAARLYGPNDTALPD
                     GWVHNLEHGAMVILYRGRDGDPGITGDGQAALRTLFDGFPPSPVCGIAKGTSQGPVIA
                     RFDEMATPYAAIVWDRVLPLQTLDTAQILAFWQQWGEKTNPEPQCAPPSAGPSAAPST
                     APSAAPSTESSAPSPS"
BASE COUNT          598 a         1406 c         1422 g          592 t
ORIGIN      
        1 ctcggccaac gatcgtccgg cgacccagcc gcgcacgcgt gacgggtggt agaccgactc
       61 gacccggtcg tgcacggagc cgatcgtgaa gtcgtaggca tggcgcgcca ggtggtcgcg
      121 gatgtcggat tcccagctgc ggtcgtaggt cagctcgacc ccgaagcgga tcgtcacgcc
      181 gcgcgggccc catcgctcgg ccgcctcgcg gacgacgcgc tcgcgatcgg cgaaggacgc
      241 gtacccgaag gccggagcac ccggctcgaa gtccacgtgg tccgtgatgg ccagctcggc
      301 gatgccccgc tcgagggcgg ccgccgcata gtcgtcgatc gggacatcgc tgtccggcga
      361 caggtccgtg tggagatgtg cgtcgagcgg caggtcccgt ccctggcggt cggtcacctc
      421 gtgcgcgcct ccggcgacac cacgatcacc ccgagacgag gcccagctcg tgcccgaccc
      481 ggtcgaacgc ggcgaggacg gcgtccagct gctcatcggc gtgggcggcc gtcacgatcg
      541 tgcgcagcct ggccttgtcc atcgccacgg tcgggaagac gaccggctgg acgaagacgc
      601 cctcctcgat caaccggtcg ctgaaccggc cggcggtctc ggggtcgccc atcatcaccg
      661 gcgtgatcgg cgtctcggag tggcccgtgt cgaaaccgag ccgcgtgagc tcggccttga
      721 accggcgcgt gttcgcccac aaccggtcct gcagctccgg ctcgtcctgc atgacccgga
      781 tcgcctcgcg gcaggcggcc accacggccg gcgggtgcga cgtcgagaac aggaacggcc
      841 tggcccgctg ggtgaggatc tcgcggaggg cgatcgatcc ggccacgtag cccccgagcg
      901 agccgaccgc cttgctgagc gtgccgacct ggatcgcgac ccggccgtgg agcccgaagt
      961 ggtcgaccga gccgcggccg ttgcgaccga gcacccccga ggcgtgggcg tcgtcgacca
     1021 tgacggccgc accgaacgcc tcggccgcct cgacgatctc gggcagccgc gcgatgtcgc
     1081 cgtccatcga gaacaccccg tccgtcacga cgagaatcag gtgataggcg ccgcctcccg
     1141 gccggccctg ctccgtcgcc tcgcgcagga tctcccggag ggcatcgacg tctccatgcg
     1201 ggaagacctg ccgaggtgcc ttggagaggc gcatgccgtc gatgatcgac gcgtggttga
     1261 gcgcgtcgga cacgatcagg tccgtctcgc cggtgatcgt cgggatgacg cccgtgttcg
     1321 cggtgaaccc ggactggaag gtgaggacgg cgggcgtctc cttgaatgcc gcgagttccg
     1381 cctcgagcgc ctcgtgcatg gtcatcgtgc cggcgatcgt gcggaccgcg ccgctccccg
     1441 cgccgaactc gcgaacggcc tgctcggccg cgcggcacac gcgcggatgg tgggtcaggc
     1501 cgaggtagtc gttggacgac aggctgatca ggcgccggtc gtcgaccgac acgatcggcc
     1561 cctgggccga cgacatgacc cgcaacgggc ggtagaggtg gcgctcgcgg agggcggcga
     1621 cctcgtcggc gaggaaggcg agcggatcgg gaagctgggt catgacgtcc aatccatgat
     1681 gaccttgccg gaatcgccgg cccgggcggc ggcgaacgcc gcggcatact cgcggaagcc
     1741 gaaccggtgg gtgatcgccg ggctgatgtc cagcccggac gtgagcatga ccgacatctt
     1801 gtaccaggtc tcgtacatct cccggccgta gatgccctgg atcgtcagct gcttgaagac
     1861 gatctggttg acgtcgatcg ggatctccgc cgtcgggatt ccaagaatgg ccatcgagcc
     1921 accatgggcc atgttcgata gggcatcgcg cagcgcgccg gcgttgcccg acatctccag
     1981 cacgacgtca aagccctcca ccatctggag atcggcctgg acgtcggcaa gcgtctcggc
     2041 ccctggatcc gtgacgcgcg ttgctcccat gcgggccgcc agcccccggc ggtacgcgtt
     2101 cggctcgctc acgacgacgt agcgagcgcc ggcatggcgg accaccgcag tcgccatgag
     2161 cccgatcggc ccggcgccga cgacgagcac gtcctcgccg aggacaggaa aggcgagcgc
     2221 cgtgtggacc gcgttcccaa acggatcgaa gaccgccatg acgtcctggt cgatgcccgg
     2281 ccagtggtgc cagacgttcg tcacgggcag ggcgacgaac tcggcaaacg cgccgtcccg
     2341 gttgacgccc agcccctgtg tgttggcaca gaggtgatag cggccggccc ggcagtgccg
     2401 gcagcgccca cacacgacgt gcccctcgcc gctgacgatg tccccgggat ggaggtcggc
     2461 aacgtttgag ccgatatcgg ccacctcgcc gacgaactcg tgacccacga cgagcggcgg
     2521 cttgatcgtg gcggcggccc agggatccca ggcctcgatg tggaggtccg tcccgcagat
     2581 cccggtcttg tgaacccgga tcaggacgtc gttgatgccg atctcgggga tcgggacgtc
     2641 gcgtagctcg agaccggctt cggggcgggc cttgaccagg gcaagcatcg agttgggcct
     2701 cccggctccg gtacgggcgt caatgatgcg cgcggccgtc gtcccccgtg acgtccgacc
     2761 agtcgacgac gggattctcc acgatgccga tctgttcgat ctcgcagcgg gcgcggtcgc
     2821 ccggttcgag gaagaccggc ggatcgcgga agaccccgac gcccgacggg gttccggtga
     2881 cgacgaggtc gcccggctcg agcgtgatga cccggctgat gtactcgatc agctcggcga
     2941 cgctccagat catgtccgcc gtgctgccgt cctgcatcgg gaccaggcga ccctggtcgg
     3001 gacccgagcc cgggatccgc cacgactgca ggcggagtgc ctgcgggtcg gggatctcgt
     3061 ccgccccgac gaagaccggc ccgactggca ggaacgtgtc cgagcccttc gcccggagcc
     3121 actgaccgtc gcccgtctcg ccctcgcgaa gtgcctgctt cgtcccctgc caatcgcgcg
     3181 cgctcacgtc gttcaccacg acgtacccgg ccacgtgatc gagcgcccgc gcctccggca
     3241 ctcgatgcgc cctcgtcccg atcacgaccc cgagctcgac ctcgaggtcc agggcatgcg
     3301 taccctccgg tcgcacgatc gggtcgccgt cgccgatgac ggcgttgccg aacttggcga
     3361 acagcagcgg ccggacgggg agcccgcggc cgccttccgc gacgtggccg cggtagttga
     3421 ggccgacgca gatgatcttg cccggacgcg ggacgtacga ggtctgacgc atcgcgccgg
     3481 ccaggtcagc tcgggctcgg ggcgctggac tcggtgctgg gagcggcgct cggcgcagtg
     3541 ctgggagcgg cgctcggccc cgcgctcggt ggcgcgcact gcggctccgg gttggtcttc
     3601 tcgccccatt gctgccagaa cgccaggatc tgggccgtgt ccagcgtctg gagcggcagg
     3661 acacggtccc agacgatcgc ggcgtacggc gtggccatct cgtcgaaacg ggcgatcacc
     3721 ggcccctggc tggtgccctt ggcaatgccg cagaccggac tcggcgggaa cccgtcaaag
     3781 agcgtccgga gggccgcctg gccgtcgccg gtgatcccgg gatccccgtc gcggccgcgg
     3841 tacaggatga ccatcgcgcc gtgttcgagg ttgtggaccc agccatccgg gagcgcagtg
     3901 tcgttgggcc cgtagaggcg agcggcgatc gggccggcgc cggacgcgtt gtcgtgcgca
     3961 cccgaggccg gcgggcaata cgtgtaggtg accttctcgc cgacgctgac gtggtgcc
//
LOCUS       DATDDI010000312         3296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_485350, whole genome shotgun sequence.
ACCESSION   DATDDI010000312 DATDDI010000000
VERSION     DATDDI010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485350"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="VIU37_04465"
     CDS             <1..620
                     /locus_tag="VIU37_04465"
                     /inference="COORDINATES: protein motif:HMM:NF013593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsH"
                     /protein_id="HEY6013230.1"
                     /translation="GHALVAKLLPGADPIHKVTIIPRGMALGLTQQLPMDEKHTYPRE
                     YLLNNLVILFGGRVAEELVLNHMTTGAGNDIEKATDLARRMVTEFGMSDRLGPLSFGK
                     RDELVFLGREIGEQRNYSDEVAKTIDEEVRAIIDKAYERATDVLTVHRDKLIALAEKL
                     VAEETVDSDAFEALFSDMPPKEELHGIPTIVGPGQPVPEANPQPA"
     gene            697..2082
                     /locus_tag="VIU37_04470"
     CDS             697..2082
                     /locus_tag="VIU37_04470"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF006053.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEY6013231.1"
                     /translation="MPDRDAALEAHLGETRDSRYTTLFEFLRIPSISALPDHAADCRR
                     AAGWVADALTAAGVEHAEVCETDGHPVVYADWLHAPGAPTVLVYGHYDVQPVDPLELW
                     TSPPFVPVIEGRRLLARGAADDKGQIHAHVMAAAALLATRGAMPVNVRYLFEGEEESG
                     SVNLDRWLQANQARLAADAVVVSDTGFFEGNVPAITTGLRGLMYAQIDVVGHKVDLHS
                     GGFGGTVENPANALAQIIAALKGPDGRIRIPGFYDDVMPLTDADRADFAALPFDEAAY
                     LERLGLPALAGEVGYTTLERRGGRPTLDVNGLWGGFSGAGSKTIIPAHAHAKVSCRLV
                     ASQEPGRVFEQLKAYVEQIAPPGVTTTVTFLGGGRPSLTPKDHPATCAAARAIEATFG
                     RSPVYIREGGSIPVTASFERILGLPVVLLGIVQPDCNAHAPNEWLDLDNYETGIRTFA
                     RLFDELTDVRT"
     gene            2161..3237
                     /locus_tag="VIU37_04475"
     CDS             2161..3237
                     /locus_tag="VIU37_04475"
                     /inference="COORDINATES: protein motif:HMM:NF015736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6013232.1"
                     /translation="MSTEAPDTTVKAPAWQLETANGSLKPRSALDVLVDLNDKVTTGN
                     VAEYQPVPLGFTPLDKTIGSGLRTGELLLIGGAQGTGKTTMALQMARNVASGGQANVL
                     YICFEHDEQYLLNRLIAMESALAHLPHKTGAIKVQDVRKEILGTWMAEGEANAQMANN
                     PRLRPSMDRIARYGQNLFLMRGNQTASTIDNIRKLVQEHRRLSGDRRLAVFVDYLQKV
                     PQIPEPENETEKVTYLINGLKDIALAEDVPMVCIVAADKEGLKASRLRNYHLRGSSAI
                     NYEADIILILNEKYQIVAKVNIEFNPYQAQRFRDWVIISVEKNRGGQDAVDLEFEKHF
                     EFSCFDPNGRTVQEKLIEERLYND"
BASE COUNT          587 a         1121 c         1098 g          490 t
ORIGIN      
        1 cgggtcatgc gctggtggcg aagctcttgc cgggcgccga tccgattcac aaggtgacga
       61 ttattccgcg cggcatggct ctgggcttga cccagcagct gccgatggac gaaaagcaca
      121 cttacccgag agagtatctc ctcaataacc tggtcattct ttttggtgga cgtgtcgccg
      181 aagaactggt gctcaaccac atgaccacgg gcgcaggaaa tgacatcgag aaggcgaccg
      241 atctcgcccg acggatggtc accgagttcg ggatgagtga tcggctcggc ccgctctcct
      301 tcgggaagcg cgacgagctg gtcttcctcg gtcgggagat cggcgagcag cgcaactaca
      361 gcgacgaggt cgccaagacc atcgacgaag aggtccgggc gatcatcgac aaggcgtatg
      421 agcgagcgac ggacgtcctg acggtccacc gcgacaagct catcgccctg gccgagaagc
      481 tggtggccga ggagacggtc gactccgacg ccttcgaggc cctcttcagc gacatgccgc
      541 ccaaggaaga gctccacggg atcccgacga tcgtcggacc cggccagccc gtccctgagg
      601 cgaacccgca gccggcctga ccagcggctg aacacgagcg cgagtcaatc gacgagcggg
      661 ccggcgacgg cccgctcgtt ccatgaggtg aggtcgatgc cagatcgcga cgctgccctg
      721 gaagcccacc tgggtgagac ccgggattcg cgctacacga cattgttcga gttcctccgg
      781 atcccgagca tctcggccct gccggatcac gccgcggact gccggcgagc cgccggctgg
      841 gtggccgatg ccctcacggc cgcgggcgtg gagcatgccg aggtctgcga gaccgatggg
      901 caccccgtcg tttacgcgga ctggttgcac gcacccggcg cgccgaccgt gctggtgtac
      961 gggcactacg acgtccagcc cgtcgatccg ctcgagctct ggacgtcgcc cccgttcgtc
     1021 ccggtgatcg agggtcggcg cctgctcgcc cgtggcgcgg ccgatgacaa gggccagatc
     1081 cacgcgcacg tgatggccgc ggcggcgctc ctggcgacgc gcggcgccat gcccgtgaac
     1141 gtcagatacc tgttcgaagg cgaggaggag tcgggctcgg tcaacctcga ccgctggctc
     1201 caggcgaacc aggctcgact ggcggcggac gccgtggtgg tcagcgacac gggcttcttc
     1261 gaggggaacg tgccggcgat cacgaccggg ttgcgcgggc tgatgtacgc ccagatcgac
     1321 gtggtcgggc acaaggtcga tctccactcg ggtggcttcg gcgggaccgt ggagaacccg
     1381 gccaacgcgc tggcccagat catcgccgcg ctcaagggac cggacgggcg gatccggatc
     1441 cccggcttct acgacgacgt gatgccgctc accgacgccg atcgcgcgga cttcgcggcc
     1501 ctgccgttcg acgaggccgc ctatctcgag cggctcggtc tcccggccct cgccggggag
     1561 gtcggctaca cgacgctcga gcgccgcggt ggccggccga cgctcgacgt caacggcctg
     1621 tggggtggct tcagcggcgc gggcagcaag acgatcatcc cggcccatgc gcatgccaag
     1681 gtcagctgcc ggctggtcgc gtcacaggag ccgggtcggg tcttcgagca gctcaaggcc
     1741 tacgtcgagc agatcgcccc gcccggcgtc accacgaccg tcacgttcct cggcggcgga
     1801 cggcccagcc tgacgcccaa ggatcacccg gcgacgtgcg ccgcggcacg ggcgatcgag
     1861 gcgacgttcg gccgctcgcc ggtctacatc cgggagggcg gctcgatccc ggtcacggcc
     1921 agcttcgaac ggatcctcgg gttgccggtc gtcctgcttg ggatcgtcca gcctgactgc
     1981 aacgcgcatg ccccgaacga gtggctcgac ctcgacaact acgagaccgg catccggacg
     2041 ttcgcacgct tgttcgatga actgacggat gtgcggacct gagaggtctg ggtagatgaa
     2101 tcgcgggcag gcgggtgcta ccctacggcg accgccaacc cccggggagg aatggaccgc
     2161 gtgagtaccg aagctcccga tacgaccgtc aaggcgccag cgtggcagct cgagaccgcc
     2221 aacggcagtc tcaagccgcg ttcggcgctc gacgtgctcg tcgacctcaa cgacaaggtg
     2281 accaccggga acgtcgccga gtaccagccg gtgcccctcg gcttcacccc gctcgacaag
     2341 accatcggtt ccggcctgcg gaccggggag ctgctgctga tcggcggcgc ccagggcacc
     2401 ggcaagacga cgatggcgct ccagatggcc cgcaacgtcg cctcgggcgg tcaggcgaac
     2461 gtgctgtaca tctgcttcga gcatgacgag cagtacctcc tcaaccggct gatcgcgatg
     2521 gaatcggcgc tcgcccacct cccgcacaag acgggcgcga tcaaggtcca ggacgtccgc
     2581 aaggagatcc tggggacctg gatggccgag ggcgaggcca acgcccagat ggccaacaat
     2641 ccgcgccttc ggccgtcgat ggaccggatc gcccggtacg gccagaacct cttcctgatg
     2701 cgcggcaacc agaccgcgag cacgatcgac aacatccgca agctggtcca ggagcatcgc
     2761 cgcctgtccg gcgaccggcg cctggccgtg ttcgtggact atctccagaa ggtgccgcag
     2821 atccccgagc ccgagaacga gaccgagaag gtcacctacc tgatcaacgg gctcaaggac
     2881 atcgccctgg ccgaggacgt cccgatggtc tgcatcgtgg ccgccgacaa ggagggcctc
     2941 aaggcctctc gcctgcgcaa ctatcacctg cgtggctcgt cggcgatcaa ctacgaggcc
     3001 gacatcatcc tgatcctgaa cgagaagtac cagatcgtcg ccaaggtcaa catcgagttc
     3061 aacccgtacc aggcgcagcg cttccgcgac tgggtgatca tctcggtgga gaagaaccgg
     3121 ggcgggcagg acgcggtgga cctggagttc gagaagcact tcgagttctc gtgcttcgac
     3181 ccgaacggcc gaaccgtgca ggagaagctc atcgaggagc gcctctacaa cgactgagcg
     3241 gccggctgat ccgccgccat cgcggcgttg tcgcctccgc gcgtcgctca cgcacc
//
LOCUS       DATDDI010000313         4026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_173261, whole genome shotgun sequence.
ACCESSION   DATDDI010000313 DATDDI010000000
VERSION     DATDDI010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173261"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..996)
                     /gene="gcvT"
                     /locus_tag="VIU37_04480"
     CDS             complement(<1..996)
                     /gene="gcvT"
                     /locus_tag="VIU37_04480"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEY6013233.1"
                     /translation="MTEAHEPTVHRTPLTEVHRELGARLIEFGGWLMPVQYGSILEEH
                     RAVRERVGLFDLSHMGELHVEGPDAGAALAAALVTNPPSLAIGRAQYSMICMPDGGVI
                     DDLIVYRLAESRFLVVANAGNAATVSDTLAERLGRFKAVLDDRSLATGLLAVQGPLAA
                     GVLGPLTDVDLGTLRYYAIAEGAVAGIPAMVARTGYTGEDGFEVFVDTDRTAELWAIL
                     LAAVRSAGGLPVGLGARDTLRLEAGMPLYGNELDRSTNPYEANLGRVVKLAKPGDFVG
                     RSALERVARDGVERTLVGLVMRGRGIARHGYPVWSGERASGVVTSGTQSPSLGEAI"
     gene            complement(993..1475)
                     /locus_tag="VIU37_04485"
     CDS             complement(993..1475)
                     /locus_tag="VIU37_04485"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY6013234.1"
                     /translation="MVRLRAATATSAGGVVVRRESGRAWLVVGSRRRERDGWTWTLPK
                     GTPKPGETREETALREVAEETGLEVRITGPLDSIEYWFVQSGQRIHKTVHYFMMEPTG
                     GDLANHDHEFEQVRWIPFAEAPSMLTFETERTLVARAATLVGETAPVGGEVQSAESLP
                     "
     gene            complement(1809..2831)
                     /locus_tag="VIU37_04490"
     CDS             complement(1809..2831)
                     /locus_tag="VIU37_04490"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HEY6013235.1"
                     /translation="MKPWGRLPGDDPERDRAEREAAIEAAGIDLHPVSPAEHAHPHER
                     SGAGEPPVIGIVGAGAVGTALGVALSRAGWPVHAVSSRDAARRERFRSLVTVTRTFVD
                     PEALVEEVELIVLAVPDDVIAPLAGGLRMYSGQAMVHTSGAVGAEVLAPAMAAGTQIG
                     SFHPLVAFADTERAVAALHGATVAIEGDDQLAALLARMAEAMGAVPVRLAPGSKPAYH
                     AAAVLAAGGFVALLDAIAELGRAAGLDEAGSLTIYGPLIEGTLANARALGIRAALTGP
                     ITRGDVGTVRAHLAALRDLAPDALDLYVAAGHREITLAEGRGALAPAAATAMRGLLAG
                     ALARRD"
     gene            2954..>4026
                     /locus_tag="VIU37_04495"
     CDS             2954..>4026
                     /locus_tag="VIU37_04495"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY6013236.1"
                     /translation="MPRIDPFGARAALGAGLPDCYRLDVLGDLVDLPAMPVTIKILLE
                     NLLRHAGHGIVRTQDVETLASWRPGVAAEAEIPFMPSRVVLQDFTGVPAIVDLAVMRD
                     AMADLGGDPGRVNPLVPADLVIDHSVQVDRFGTPAAFAFNVDREYDRNGERYQLLRWA
                     QTAFRDLRVVPPGTGIIHQVNLEFLASVITDREAADGSGGRVAFPDTVVGTDSHTTMV
                     NGLGVLGFGVGGIEAEAVLLGQPLYQPMPHVVGVRLHGTLPSGSTATDLVLVVTEMLR
                     THGVVGSFVEFAGDGLAGLSLADRSTISNMSPEFGATATLFPIDDETLAHLRLTGRSA
                     ERVELVERYARAQGLWREPGDGPA"
BASE COUNT          552 a         1519 c         1429 g          526 t
ORIGIN      
        1 gatcgcctcg ccgagcgacg gcgactgggt cccgctcgtc accacgcccg acgcgcgctc
       61 gccggaccac accgggtatc cgtgccgggc gatgcctcgt ccgcgcatga cgaggccgac
      121 gagggttcgt tcgacgccgt cgcgggcgac ccgctcgagg gccgagcggc cgacgaagtc
      181 gcccggcttg gcgagcttga cgacccgacc gaggttcgcc tcgtacgggt tggtcgatcg
      241 gtcgagctcg ttcccgtaga gcggcatccc ggcctcgagc cggagcgtgt cgcgtgcgcc
      301 cagtccgacc ggcaggccgc ccgccgaccg gaccgcggcg agcaggatcg cccacagctc
      361 ggccgtgcga tcggtgtcga cgaacacctc gaacccgtcc tccccggtgt acccggtccg
      421 ggccaccatc gccggaatcc ccgcaaccgc cccttcagcg atggcgtagt agcgcagcgt
      481 gccgagatcc acgtccgtca gcggccccag gacgccggct gccaggggac cctggacggc
      541 aagcagcccg gtcgccagcg agcgatcgtc gagcacggcc ttgaaccgcc caagccgctc
      601 ggcgagcgtg tccgagaccg tggcggcgtt gcccgcgttg gcgacgacca ggaacctcga
      661 ctcggccagc cgatagacga tcaggtcgtc gatgacccca ccgtccggca tgcagatcat
      721 cgagtactgg gcgcggccga tcgcgaggct cggcgggttc gtgaccagcg cggcggcgag
      781 cgcggcgccc gcgtcgggcc cttccacgtg gagctcgccc atgtgcgaaa ggtcgaacag
      841 cccgacgcgc tcccggacgg cccggtgctc ctcgaggatc gacccgtact gcacgggcat
      901 cagccaaccg ccgaactcga tcaggcgggc gccgagctcc cgatggacct cggtcagcgg
      961 agtccgatgg acggtcggct cgtgggcctc ggtcacggca gcgactcggc cgactgaacc
     1021 tcgccaccga cgggcgccgt ctcccccacc aacgtggcgg cccgcgccac cagggtccgc
     1081 tcggtctcga acgtcagcat cgaaggcgcc tcggcgaagg ggatccagcg aacctgctcg
     1141 aactcgtggt cgtggttggc caggtctccg ccggtcggct ccatcatgaa gtagtggacg
     1201 gtcttgtgga tgcgctgccc ggactggacg aaccagtact cgatcgagtc gagcggtccg
     1261 gtgatccgca cttcgagccc ggtctcctcg gccacctcgc ggagggcggt ctcctcacgg
     1321 gtctcgcccg gcttcggcgt gcccttcggg agcgtccagg tccagccgtc acgctcgcgg
     1381 cgccggctcc cgacgaccag ccacgctcgg ccggattcgc ggcgaacgac gacaccgccg
     1441 gcggacgtgg cggtcgcggc cctcagacgg accacggcgc cgatgcggcg cgcggacgtc
     1501 ggggccccgc cccagatcgc ccggagcggg cccagcgcat caccactcgg gggcccagct
     1561 gaccgctgtg ctgtgcttgc ggccgagcgg gctggatcga gcgccagccg gctcgaagcc
     1621 gggtgagcgg ggccacatcg ggaccatgga gcaccgtcga acgtgttccc ggcgcgcgga
     1681 acggatcggc cgggcgcagg cccaggcggc gctcgcggac ccggttcgat ggacgcacga
     1741 agcgagccgc cggacgggct gcgtacttgg cggcgatgct gtggtccatg ggccgcaatg
     1801 gtacccgttc agtcgcgccg cgcaagcgcg ccggccagga gtccgcgcat ggccgtcgcc
     1861 gccgccggtg caagcgcgcc ccgcccctcg gccagggtga tctcccggtg gcccgcggcg
     1921 acgtacaggt ccagcgcgtc aggggcgaga tcgcgcagcg cggcgaggtg ggcgcgaacc
     1981 gtcccgacgt cgccccgggt gatcggcccg gtgagcgccg cgcggatccc gagggcgcgg
     2041 gcattggcca gcgtgccctc gatcagcggg ccgtagatgg tgagcgatcc ggcctcgtcg
     2101 agcccggccg cgcgcccgag ctcggcgatg gcgtcgagca gggccacgaa cccaccggcc
     2161 gccagcaccg ccgctgcgtg ataggccggc ttcgaacccg gcgccagccg gaccggcacg
     2221 gcgcccatcg cctcggccat cctggccagc agcgccgcca gctggtcgtc gccctcgatg
     2281 gcgaccgtcg cgccgtgcag cgctgcgacg gcccgttcgg tgtcggcgaa ggccacgagc
     2341 gggtggaacg agccgatctg cgtgccggcc gccatcgccg gcgcgaggac ctcggcgccg
     2401 acggccccgc tcgtgtggac catcgcctgc ccgctgtaca tccggagccc gccggccagc
     2461 ggcgcgatca cgtcgtcggg cacggcgagc acgatcagct cgacctcctc gaccagtgcc
     2521 tccggatcga cgaacgtgcg cgtgaccgtg accaggctcc ggaaccgctc gcgcctggcc
     2581 gcgtcccggc tcgacaccgc gtggaccggc cacccggcgc gcgaaagggc gacgccgagc
     2641 gccgtcccga ccgcgccggc gccgacgatc ccgatgaccg gcggttcgcc ggccccggat
     2701 cgctcgtgcg gatgggcatg ctcggccggc gagaccgggt ggaggtcgat cccggccgcc
     2761 tcgatggcgg cctcgcgctc ggcgcgatcc cgctccggat cgtcgcccgg caggcggccc
     2821 cagggcttca ccgactagtc atcggtcgcg ctcgaacgag cggagccggc gacgcacgca
     2881 tcgaccgccc agcgcggcgg aagcggtagg cttgtcatcc ttcgagtgta gcgagcgagt
     2941 gaggaccgac gagatgccac ggatcgaccc tttcggcgcg cgggctgcac tcggcgcggg
     3001 ccttccggac tgctaccggc tcgacgtcct gggcgacctc gtggacctgc ccgccatgcc
     3061 ggtcacgatc aagatcctgc tcgagaacct gctccgccac gccggtcacg ggatcgtccg
     3121 gacccaggac gtcgagacgc tggcctcgtg gcggcccggc gtggccgccg aggccgagat
     3181 cccgttcatg ccgtcgcggg tggtgctcca ggacttcacc ggcgtccccg cgatcgtgga
     3241 cctggccgtc atgcgcgacg cgatggccga cctcggcggc gacccgggca gggtcaaccc
     3301 gctcgtcccg gccgacctgg tcatcgacca ctccgtccag gtcgaccggt tcgggacgcc
     3361 ggccgccttc gcgttcaacg tcgatcgcga gtacgaccgc aacggcgagc gctaccagct
     3421 cctccgctgg gcgcagacgg ccttccggga cctgcgcgtc gtgccaccgg gcacggggat
     3481 catccaccag gtcaacctgg agttcctggc cagcgtgatc accgaccgcg aagcggccga
     3541 cggctccggt ggccgggtcg ccttcccgga cacggtggtc ggcaccgact cgcacaccac
     3601 gatggtcaac ggcctgggcg tcctgggctt cggcgtcggc ggcatcgaag ccgaggccgt
     3661 gctgctgggc cagccgctct accagccgat gccgcacgtg gtcggcgttc gactgcacgg
     3721 gacgctgccg agcggctcga ccgcgaccga cctcgtcctg gtggtcaccg agatgctgcg
     3781 gacccacggg gtcgtcgggt cgttcgtcga gttcgccggc gacgggctgg ccggcctgtc
     3841 gctcgccgat cgatccacga tcagcaacat gagcccggag ttcggcgcga ccgccacgct
     3901 cttcccgatc gacgacgaga cgctcgccca cctccgcctc accggccgat cggccgaacg
     3961 ggtcgagctc gtcgagcgct atgcccgcgc ccagggcctc tggcgcgagc ccggcgacgg
     4021 gcccgc
//
LOCUS       DATDDI010000314         2392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_89926, whole genome shotgun sequence.
ACCESSION   DATDDI010000314 DATDDI010000000
VERSION     DATDDI010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89926"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..616
                     /locus_tag="VIU37_04500"
     CDS             <1..616
                     /locus_tag="VIU37_04500"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY6013237.1"
                     /translation="PAAEWRRSIQLLRTAPSATTAALVRPAAMADFDLLAGHLVALNG
                     LDAARRQAFVDSATVREVEPGTAVIKQGDASDSAYFVLDGRLVAGVPEPDGGYRSLST
                     MVTGDFFGEIAALTGSPRTSNVLAEEPSTLVEVPAASLRALMDVPALGSLFMSTLTER
                     LGRTTGADRPRLSGLDQDALRDLRTPRPAVEALPRTYHDEPAVG"
     gene            721..933
                     /locus_tag="VIU37_04505"
     CDS             721..933
                     /locus_tag="VIU37_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013238.1"
                     /translation="MADKRIHLPKEGLVDPRQRTPGEHFLDVSDDVQGHGFPLPAPPA
                     DFLKRGPGHGGEALPAGDDVEEPEHR"
     gene            complement(1006..1842)
                     /locus_tag="VIU37_04510"
     CDS             complement(1006..1842)
                     /locus_tag="VIU37_04510"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY6013239.1"
                     /translation="MPERMLPAWSDAFAGAARTRLTRERPFGTLDRRAVFGDSRGEGV
                     TVAIIDSGVEADHPAIGGRLVRSLRVELGDDGPRVVEDDDGADLVGHGTACAGIVHAI
                     APAADLVSIRVLGADNRGAGPSFAAAIEWAIGQGFGVVNLSLSSRSEAMAERFHELAD
                     EAYFANTLLVSAANNVVGASYPSLFAAVVSVAAHDAGDPDAWFYNPAPPVEFGAHGLD
                     VDVAWRGGTRIRATGNSFAAPHLAGRAALLRSRYPHASPFEIKALLAATASDPGTAAA
                     PT"
     gene            complement(1853..>2392)
                     /locus_tag="VIU37_04515"
     CDS             complement(1853..>2392)
                     /locus_tag="VIU37_04515"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY6013240.1"
                     /translation="GYAFATGQPLAIADVATDPRFERETAERTGYVPRSLLAVPLVDE
                     EGIVGVMEWLDRLDGAPFDLNDLEVATRVAAAATATARATGLDRAAGRLLRRALEAAL
                     ADATANDADAIDADAIDALVAEVSTELAGDDPLWRLADRIGQLRAADPDDVDLAVDWL
                     DALLARTRRRSRPGRRSRG"
BASE COUNT          320 a          895 c          889 g          288 t
ORIGIN      
        1 gccggccgcc gagtggcggc gctcgatcca gctgctgcgg accgcgccga gcgccacgac
       61 cgccgcgctg gttcggccgg ccgcgatggc cgacttcgac ttgctggccg gccacctggt
      121 cgcgctgaac gggctggatg ccgcgcgccg ccaggcgttc gtcgacagcg cgaccgttcg
      181 cgaggtggag ccgggcacgg ccgtcatcaa gcagggcgat gcgagcgact cggcctactt
      241 cgtgctcgac gggcgcctcg tggccggcgt gcccgagccc gacggcggct accgctcgct
      301 gtcgacgatg gtgaccggcg acttcttcgg cgagatcgcg gcgctgaccg gcagcccgcg
      361 cacctcgaac gtcctcgccg aggagccctc gaccctggtg gaggtcccgg cggcgagcct
      421 gcgggcgctg atggacgtgc ccgcgctcgg ctcgctgttc atgtcgacgc tgaccgagcg
      481 actcggccgc accaccggcg ccgaccgccc gcggctgtcc gggctcgacc aggacgcgct
      541 ccgcgacctg cgcacgccgc gaccggcggt cgaggccctg ccgcggacct atcacgacga
      601 gccggctgtc ggctagccga caggatggcg gtcgggccgc ggctgggcgg actcgacgcg
      661 accggctacg gtagcggaca tcgaggccgt gtccagcacg gtggaagggg aacgaaggcg
      721 atggcagaca agcgaatcca tctaccgaag gaggggttgg tcgacccgcg acagcggacg
      781 cccggcgagc acttcctcga cgtcagcgac gacgtccagg gccacgggtt cccactgccg
      841 gcgccgccgg ccgacttcct gaagcgcggg ccgggccacg gcggcgaggc gctgccggcc
      901 ggcgacgacg tcgaggagcc cgaacaccgc tgatcgcatt ggggggcctg caacccggaa
      961 gacaccgccc gctcctcccg ggcggtgtct ccatgtcgag cggcgtcagg tcggtgcggc
     1021 ggccgtcccc gggtccgagg ccgtcgccgc caggagggcc ttgatctcga acgggctggc
     1081 gtgcgggtac cgggagcgga ggagcgccgc ccgtccggcc aggtgcggcg cggcgaacga
     1141 gttgccggtc gcccggatcc gcgtgccgcc gcgccacgcg acgtcgacgt cgaggccgtg
     1201 cgccccgaac tcgacgggcg gcgccgggtt gtagaaccag gcgtccggat cgccggcgtc
     1261 gtgcgcggcc acggacacga cggcggcgaa caacgacggg tatgacgccc cgacgacgtt
     1321 gttggcggcc gacacgagca gcgtgttggc gaagtacgcc tcgtcggcga gctcgtggaa
     1381 ccgctccgcc atcgcctcgc tccgcgacga caggctgagg ttgacgacac caaacccctg
     1441 cccgatcgcc cactcgatgg cggcggcgaa cgacggtccg gcgccgcggt tgtcggcgcc
     1501 gagcacccgg atcgagacga ggtccgcggc gggcgcgatc gcatggacga tcccggcaca
     1561 cgccgtgccg tggccgacca ggtcggcgcc gtcgtcgtcc tcgacgaccc gcgggccgtc
     1621 atcgcccaac tccacccgca ggcttcgcac cagccgaccg ccgatcgccg gatgatcggc
     1681 ctcgacaccg gaatcgatga tcgccacggt gacgccctcg ccccggctgt cgccgaacac
     1741 cgcgcggcgg tccagcgtgc cgaatgggcg ttcgcgcgtg agtcgcgtcc gcgccgcgcc
     1801 ggcgaaggcg tcgctccagg ccgggagcat gcgttccggc acgggccctc gatcagccgc
     1861 gcgagcgccg gccgggccgg cttcgccggc gcgtacgcgc caggagcgcg tccagccagt
     1921 cgacggccag gtccacgtcg tcggggtccg ccgcccgcag ctggccgatc cggtcggcga
     1981 gccgccaaag cggatcgtca ccggcgagct cggtcgagac ctcggccacg agggcgtcga
     2041 tcgcgtccgc gtcgatcgcg tccgcgtcgt tggccgtcgc atcggccagc gccgcctcca
     2101 gcgcgcgccg cagcagccgg ccggccgccc ggtcgagacc ggtggcgcgg gcggtggccg
     2161 tggccgcggc ggcgacccgg gtcgcgacct cgaggtcgtt caggtcgaac ggggcgccgt
     2221 cgagccggtc cagccactcc atgaccccga cgatcccctc ctcgtcgacg agcggcacgg
     2281 cgagcaatga gcgcggcacg tagcccgtcc gctcggccgt ctcacgctcg aagcgcgggt
     2341 cggtcgcaac gtcggcgatc gccagtggct gcccggtggc aaaggcgtac cc
//
LOCUS       DATDDI010000315         1910 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_589500, whole genome shotgun sequence.
ACCESSION   DATDDI010000315 DATDDI010000000
VERSION     DATDDI010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589500"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..775
                     /locus_tag="VIU37_04520"
     CDS             <1..775
                     /locus_tag="VIU37_04520"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEY6013241.1"
                     /translation="EKLPDITEFARVYQGVEPITEPVPVQPTAHYAMGGIPTDIATRV
                     IRDASNTVVPGLYAAGECACVSVHGANRLGTNSLVDLLVFGRRAGRQMAADIGGVGFA
                     DLPANAEDAVRDEIESLRGRRTGESTAHIRRDLADVMMDNVGVYRDEALLTEALRKVR
                     ALAERYTRASVQDKGKTFNTDLLEAREVGYLLDCAETTVVSALARKESRGAHAREDYP
                     ERDDVNFLTHTLATRAEGGPKLSYKPVTITRFEPKPRVY"
     gene            792..1496
                     /locus_tag="VIU37_04525"
     CDS             792..1496
                     /locus_tag="VIU37_04525"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF004616.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEY6013242.1"
                     /translation="MQVDLRILRFDPERDERPHWESYSVEADPKLDRVLDLLHRVKWE
                     QDGTLTFRRSCAHGVCGSDAMLINGRNRLACKLRVEQLGARRITVAPLPGLPVVKDLV
                     VDMDGFFDKLRSVQPFLINEGPPPERERLQSPADRAVYDDTTKCILCAACTTSCPSFW
                     AQPSYVGPAAIVAAHRFIFDTRDQGGDERLEILADKDGVWRCRTIFNCTDACPRGIKI
                     TQAILEVSAAIVERGV"
     gene            1628..>1910
                     /locus_tag="VIU37_04530"
     CDS             1628..>1910
                     /locus_tag="VIU37_04530"
                     /inference="COORDINATES: protein motif:HMM:NF024848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase-like protein"
                     /protein_id="HEY6013243.1"
                     /translation="MRRPDARDPRATPDASISEYLGIQTNNVAEYTGTMRALALAREL
                     GAREVELLLDSKLIVEQLTGRWRVKDVKLIPLWTACRQTLAGFDRWSAGH"
BASE COUNT          295 a          695 c          653 g          267 t
ORIGIN      
        1 ggagaagctg ccggacatca ccgagttcgc ccgggtctac cagggggtcg agccgatcac
       61 cgagccggtc ccggtccagc ccacggccca ctacgccatg ggcggcattc cgaccgacat
      121 cgcgacccgg gtgatccggg acgcgtcgaa caccgtcgtg cccgggctgt acgccgccgg
      181 cgagtgcgcc tgcgtgagcg tccacggggc gaaccgcctt ggcaccaact cgctggtcga
      241 cctgctcgtg ttcggtcgcc gggccggacg ccagatggcc gccgacatcg gcggcgtcgg
      301 gttcgccgac ctgccggcga acgccgagga tgcggttcgc gacgagatcg aatcgctccg
      361 cggtcgccgg accggcgaga gcaccgccca catccggcgc gacctggcgg acgtgatgat
      421 ggacaacgtc ggggtctacc gcgacgaggc cctgttgacc gaggccctgc ggaaggtgcg
      481 ggccctcgcc gagcgctaca cgcgggcctc cgtgcaggac aagggcaaga ccttcaacac
      541 cgacctgctc gaggcgcgcg aggtgggcta cctgctcgac tgcgccgaga ccaccgtcgt
      601 gtcggcgctc gcgcgcaagg agagccgtgg cgcgcacgcc cgcgaggact acccggagcg
      661 cgacgacgtc aacttcctga cccacacgct ggccacgcgc gccgagggcg gaccgaagct
      721 ctcctacaag ccggtcacca tcacccgctt cgaaccgaag ccacgggtct actgagccag
      781 gctggacgag catgcaggtc gacctccgaa tcctccgctt cgaccccgag cgcgacgagc
      841 gtccgcactg ggagtcgtat tcggtcgagg ccgacccgaa gctcgatcgc gtgctggacc
      901 tgctgcatcg cgtcaagtgg gaacaggacg gcacgctgac cttccggcga tcctgtgctc
      961 acggcgtgtg cggctccgac gcgatgctca tcaacggccg caaccggctg gcctgcaagc
     1021 tccgggtgga gcagctcggg gctcgccgga tcacggtcgc gcccttgccc gggctgccgg
     1081 tggtcaagga cctcgtcgtc gacatggacg gcttcttcga caagctgcgg agcgtgcagc
     1141 cgttcctgat caacgaaggc ccgccacccg agcgcgagcg gctccagtcg ccggccgacc
     1201 gggcggtcta cgacgacacg accaagtgca tcctctgcgc ggcctgcacc acctcgtgcc
     1261 cgtcgttctg ggcgcaaccc tcgtacgtcg ggccggcggc catcgtggcg gcccaccgct
     1321 tcatcttcga cacgcgcgac cagggtggtg acgagcgcct cgagatcctc gccgacaagg
     1381 acggggtctg gcgctgccgg acgatcttca actgcacgga cgcctgtccg cgcgggatca
     1441 agatcaccca ggcgatcctc gaagtcagcg cggcgatcgt ggagcgaggg gtctgagcga
     1501 gccgctcttt cccgagctcg aggtcgtccc cgccgcgcgc gagcgcgggc ccggcttcct
     1561 gatccggacc gacggcgccg ctcgaggcaa ccccggtccg gcgtcgctgg gcgcggctct
     1621 gttcgacctg cggcggcccg atgcgcgcga cccccgggcg acccccgatg cctcgatctc
     1681 ggagtacctc gggatccaga cgaacaacgt ggccgagtac accgggacca tgcgggccct
     1741 ggcactggcg cgcgagctcg gtgcgcgcga ggtcgagctg ctcctggact cgaagctcat
     1801 cgtggagcag ctcaccggtc gctggcgggt caaggacgtc aagctgatcc cgctctggac
     1861 ggcctgccgc cagaccctcg ccggcttcga tcgctggagc gccggccacg
//
LOCUS       DATDDI010000316         2390 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_651758, whole genome shotgun sequence.
ACCESSION   DATDDI010000316 DATDDI010000000
VERSION     DATDDI010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_651758"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VIU37_04535"
     CDS             <1..524
                     /locus_tag="VIU37_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018287644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013244.1"
                     /translation="QLNFGGNTDFLNMLERERLESKKISKTNAVTSMLDYELDADDVH
                     VGPSDHVPWLLDRKWCYIRMEGTTYGDVPLNAELKLEVWDSPNSAGVITDAIRCLKLG
                     LDRGLKGTLVAPASYFMKSPPMQIHDDIAFNRVEAFIRGDDNETLVGTEAPPKRALKR
                     MAGSKAKVAAAAK"
     gene            521..1618
                     /locus_tag="VIU37_04540"
     CDS             521..1618
                     /locus_tag="VIU37_04540"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013245.1"
                     /translation="MTERQRQLEAPHRRGGKSSPRVVERAAVAGYRATTWLLGVLPAG
                     VGRAVIGRLSQASYWAWPAKRRWSNQNFGHVLGLPPEDPRVRSLALRAYREYGRYLVE
                     LMRLPTLPPEEVSDLADLDAEDIRSIWGDHPTGGLILAAGHVGNNEAVAAGIAHHGLP
                     ISVVADDSAFPEMYELLRHQRESWGVRMIPWRNLREIFGVLRRREMLALLVDWGYRSD
                     GIPVRLMGAWTTMPAGPATLAAKTGSRILPVGIRRHEGGRFGVTWPDPITVASSDPAE
                     LQRATQAMADALGETIRLAPEQWYSFKPIWPAGEAEAADLERRARLMQAGVPDPGPNR
                     GLPRDEADAAAGAVESEGPRSGGTATEEAAG"
     gene            1615..>2390
                     /locus_tag="VIU37_04545"
     CDS             1615..>2390
                     /locus_tag="VIU37_04545"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013246.1"
                     /translation="MTLRTRGLIAASWLACHLPEVPLVRLAELCGEAWYRLAPSRAAQ
                     ARRNLRRVCRALAAEGRGTPAAKAAADDPRALERLVRAAFRHSARYYLEVARTPCLTA
                     REIERRLVVETPEAVAEAFGAGRPVIFVGLHFGAIELPALFLASRVGDAVAPMETIAD
                     AGLQEYFVRTRGAAGVRIVGLREARRELLNALRDGTSVGLVGDRDLTGGGLPIPLFGA
                     PANLPLGPAMLAVESGAPLYVVGVRRTGSARYRGGLEGVPV"
BASE COUNT          338 a          867 c          865 g          320 t
ORIGIN      
        1 accagctcaa cttcggtggc aacacggact tcctgaacat gctcgagcgc gaacgcctcg
       61 agtccaagaa gatcagcaag acgaatgccg tgacctcgat gctcgactac gagctcgacg
      121 cggacgacgt ccatgtcggc ccgtcggacc acgtgccgtg gctgctcgac cggaagtggt
      181 gctacatccg gatggagggc acgacctacg gtgacgtgcc gctcaacgcg gagctcaagc
      241 tcgaggtctg ggacagcccg aacagcgccg gtgtcatcac cgatgccatc cgctgcctca
      301 agctcggcct cgatcgcggg ctgaagggca cgctcgtggc cccggccagc tacttcatga
      361 agagcccgcc gatgcagatc cacgacgaca tcgcgttcaa tcgcgtcgag gcgttcatcc
      421 gcggcgacga caacgagacg ctcgtcggga ccgaggcacc gcccaagcgg gcgctcaagc
      481 ggatggccgg cagcaaggcc aaggtggccg ccgccgccaa gtgaccgagc ggcagcgcca
      541 actcgaagcg ccgcaccggc gcggcggcaa gtcgagcccg cgcgtcgtcg agcgggcagc
      601 cgtcgccggc taccgggcca cgacctggtt gctcggcgtc ctgcccgccg gcgtcgggcg
      661 cgcggtcatc ggccgcctgt cgcaggcctc ctactgggcg tggccggcca agcgccgctg
      721 gtcgaaccag aatttcggcc acgtcctcgg cctcccgccg gaggatccgc gggtgcgcag
      781 cctcgcgctg cgcgcctacc gggagtacgg gcgctacctg gtcgagctga tgcggttgcc
      841 gacgttgccg cccgaagaag tcagcgacct cgcggatctc gatgccgagg acatccggtc
      901 gatctggggc gaccatccca ccggggggtt gatcctggcg gccggtcacg tcggcaacaa
      961 cgaggccgtg gcggccggga tcgcgcacca tgggctgccg atcagcgtgg tggccgacga
     1021 ctccgcgttc cccgagatgt acgagctgct ccgccaccag cgcgagagct ggggcgtccg
     1081 gatgatcccg tggcgcaatc tccgcgagat cttcggcgtg ctccgacgac gcgagatgct
     1141 ggcgctgctc gtcgactggg gctaccggag cgacggcatc ccggtccggc tgatgggtgc
     1201 ctggacgacg atgccggccg ggccggcgac cctggcggcc aagaccgggt cgcggatcct
     1261 gccggtcggg atccggcgtc acgaaggcgg ccggttcggc gtcacctggc cggatccgat
     1321 caccgtcgcc tcatccgatc cggccgagct ccaacgagcc acccaggcga tggccgacgc
     1381 cctgggcgag acgatccgcc tggcacccga gcagtggtac agcttcaagc cgatctggcc
     1441 ggcgggcgag gccgaggccg ccgacctcga acgacgcgcc aggctgatgc aggccggggt
     1501 ccccgatccc ggcccgaacc gcggcctgcc ccgtgacgaa gccgatgcgg ccgccggggc
     1561 cgtcgaatcc gaagggccac gctcgggcgg gaccgcgacg gaggaggcgg ccgggtgacc
     1621 ctcaggaccc ggggcctgat cgccgcgtcc tggctggcct gtcacctgcc cgaggttcca
     1681 ctcgttcgcc tggccgagct gtgcggcgag gcctggtacc gccttgctcc ctcacgcgcg
     1741 gcgcaggcgc gacgcaacct ccgacgggtg tgtcgcgcgc tggcggccga gggccgcggc
     1801 acgccggccg cgaaggcggc cgcggacgac cccagggcgc tcgagcgcct cgttcgagcc
     1861 gccttccgcc acagcgcccg gtactacctc gaggtcgcgc ggaccccctg cctgaccgcg
     1921 cgcgagatcg agcgccggct ggtcgtcgag acccccgagg cggtggccga ggcgttcggc
     1981 gcggggcggc cggtcatctt cgtcggcctc cacttcggcg cgatcgagtt gccggcgctg
     2041 ttcctcgcgt cgagggtcgg cgacgcggtc gccccgatgg agaccatcgc ggacgcgggg
     2101 ctccaggagt acttcgtccg aacccggggc gcggccggcg tccggatcgt gggtctgcgg
     2161 gaagcgcgcc gcgagctgct caacgcgctc cgcgacggga cctcggtcgg cctcgtcggc
     2221 gatcgggacc tgaccggcgg cgggctgccg atcccgctgt tcggggcgcc ggcgaacctg
     2281 ccgctcggcc ccgccatgct ggccgtcgag agcggcgccc cgctctacgt ggtcggcgtc
     2341 cggcgcacgg ggagcgcccg ctaccgaggt gggctcgaag gcgttcccgt
//
LOCUS       DATDDI010000317         1928 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_256795, whole genome shotgun sequence.
ACCESSION   DATDDI010000317 DATDDI010000000
VERSION     DATDDI010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256795"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(182..514)
                     /locus_tag="VIU37_04550"
     CDS             complement(182..514)
                     /locus_tag="VIU37_04550"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEY6013247.1"
                     /translation="MICRQVRDLAHGADPDVVETIKRTVQPYFVLKGNIAALLAAKDH
                     VTVFLYDGGLAPDPDRIITGGHGNKTGRMIAIQQGEPINAPALTAIFRAIIANNRAGG
                     WRKLRPAG"
     gene            760..1233
                     /locus_tag="VIU37_04555"
     CDS             760..1233
                     /locus_tag="VIU37_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013248.1"
                     /translation="MGGFLIYAVVLAVVGGATWWLMSQDMAAGPWLLAAVLIGHGVVH
                     TMFAISPAATSGGPEWPFDVARSWAVTGAGLDLNVVRAVGAVLIAVVVGGFALAALST
                     VGLVVPAGWWPAAVGGSAVVSIVVLVLFFNPQLVLGIGIDAVLLWAVATKAWVPA"
     gene            complement(1432..>1928)
                     /locus_tag="VIU37_04560"
     CDS             complement(1432..>1928)
                     /locus_tag="VIU37_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013249.1"
                     /translation="GGDGIGLTVGDFSTARVNGRFRLAYLVFNTIMNLTTQEAQVACF
                     RNVADHLEPGGCFVIETGVPDLRRLPPGERYVIFDFGAAHWGIDEYDVLSQGLVSHHF
                     QRQRDGTIEKSSGPFRYVWPAELDLMARLAGLRFRERWADWGREPFTTESRSHVSVWE
                     KPLG"
BASE COUNT          254 a          654 c          704 g          316 t
ORIGIN      
        1 acggcgatgg ccgccatgat cccggcggtg acgagcagct ggtcgcgcgt cagcggcggg
       61 tcgggctcgc ggctcgtggg gggcatcggc ggattctagg ggaggtccag gccggcggcg
      121 gcaccgggct cacctcgcgt cggccttggc gccggcgccg cccgccggcc cgaccgcgcc
      181 ttcagccagc cggtctgagc ttgcgccagc cgccggcgcg attgttggcg atgatcgccc
      241 ggaagatggc cgtcagggcc ggcgcattga tgggctcgcc ctgctggatc gcgatcatcc
      301 gcccggtctt gttgccgtga ccgccggtga tgatccggtc gggatcgggg gcgagcccgc
      361 cgtcgtacag gaagacggtg acgtggtcct tcgcggcaag cagcgcggcg atattgccct
      421 tgaggacgaa atagggctgg accgtccgct tgatggtctc gacgacgtcg ggatcggcgc
      481 cgtgggcgag gtcccggacc tgccggcaga tcacctgctg ccagtccggg agcggatgta
      541 ggcgtcgacc cgcggatcct tcacgtagct cacgtccaca cctcattcga tctcatggcc
      601 cgctactcgt tggacgccgc ccggcgcccg gaatcatcgg cgccgagcgc gacgaacagg
      661 tcacctggcc cttgcccgac gtcctccgcc accctcagcc tgacgacacg ggttgcgccg
      721 tgcggcccgg catggtcgag agaggcaaac gtgaaggcaa tgggcgggtt tctcatctat
      781 gccgtcgtgc tggcggtggt cggtggcgcg acctggtggc tgatgtcgca ggacatggcc
      841 gccgggccat ggctactcgc ggccgtgctg atcggccacg gcgtggtgca cacgatgttc
      901 gccatcagcc cggccgccac gagcggcggg ccggagtggc cgttcgacgt ggcgcgctcg
      961 tgggccgtca ccggggcggg cctcgacctc aacgtcgtcc gcgccgtcgg tgcggtcctc
     1021 atcgcggtcg tggtcggcgg cttcgctctc gccgcgctct ccacggtcgg actggtggtg
     1081 ccggccggct ggtggccggc cgccgtgggt ggctctgccg tcgtctccat cgtggtgctc
     1141 gtgttgttct tcaatcccca gctggtgctc gggatcggca tcgacgccgt gctgctctgg
     1201 gcggtcgcga cgaaggcgtg ggtgcccgcc tagcggtccc gccaggttcc cggctccgca
     1261 gacgagccga acggctctcg acggcaccgg gtccgggaag acagagtcgt gggcacatcg
     1321 gggcaggttc cgtggcccga ccgtccgtgg ccgcgagatc cgtcagggcg cggtggccgc
     1381 cggggtcgga ctgccggcct cctagcgtcg cgagcgatgc cgtcgacttg ctcagccgag
     1441 cggcttctcc cagaccgaca cgtgtgagcg gctctcggtc gtgaacggct ccctccccca
     1501 gtcggcccag cgctcgcgga atcggaggcc ggcgagccgg gccatcaggt cgagctcggc
     1561 cggccagacg taacgaaacg gccctgaaga cttctcgatc gtgccatccc gctgccgctg
     1621 gaaatggtgc gataccaggc cctgggagag gacgtcgtac tcgtcgatcc cccagtgcgc
     1681 agcgccgaag tcgaagatca cgtatcgctc gcccggcggc agccgccgga gatcgggcac
     1741 gccggtctcg atgacgaagc agccgccggg ttcgaggtgg tccgcgacgt tgcggaagca
     1801 ggcgacctga gcctcctgcg tcgtcaggtt catgatcgtg ttgaagacga ggtaagcgag
     1861 gcggaagcgc ccgttcaccc tggccgttga gaagtcgccg accgtgagcc cgatgccgtc
     1921 gccgcccg
//
LOCUS       DATDDI010000318         1585 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_339732, whole genome shotgun sequence.
ACCESSION   DATDDI010000318 DATDDI010000000
VERSION     DATDDI010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339732"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VIU37_04565"
     CDS             complement(<1..884)
                     /locus_tag="VIU37_04565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013250.1"
                     /translation="MPKLPRPLAAPTIALALIVSGAPLSLLPPSVASAAVVAPYVSAG
                     REPLAPGVDHDWGRITTTIGSQAVNFVEVDQSNPSIVFEESLSNGRVTGLERVSSQAL
                     SHSFEAHRVIAAINGDVWAGFSSDAESAPNGLDVEAGELITAGTAGRPTFGVGADGRP
                     ILGSPLVTTTLTTTTLGQFAINRINQLRRSGELALYTPHFNSRTSSVASGVDIILTGI
                     ALPIRTSGTWTGIVQQTRIADGGGPIDPGTVVITVPSTSPLVNLQPGEQVTLTTTVTP
                     GWESVTQAVGGREWIVRDG"
     gene            complement(950..>1585)
                     /locus_tag="VIU37_04570"
     CDS             complement(950..>1585)
                     /locus_tag="VIU37_04570"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEY6013251.1"
                     /translation="RGEVDAHGGGALVAGDIGPSGAIMAPTGTLDYAEAVDVFAEQAA
                     ALIAGGVDLIWIETMSDLTEIKAAIEGVRRASPGIPLVATMTFDTRGRTMMGVSPEQA
                     VTSLTSWGADAIGGNCGNGPDELVGVVTRMRAADPDALLVAKSNAGMPELVDMRAVYR
                     SDPAEMAAQAVVMREAGATIIGGCCGTTPAHLSEMAARLVGNAPDSADAVG"
BASE COUNT          209 a          555 c          592 g          229 t
ORIGIN      
        1 ccgtcgcgga cgatccattc gcgaccgccg accgcctggg tgaccgactc ccagccgggc
       61 gtcaccgtcg tcgtgagggt gacttgctcg ccgggctgca ggttgacgag cggcgaggtg
      121 gacgggacgg tgatgacgac cgtgccggga tcgatcgggc ccccgccgtc ggcgatccgc
      181 gtctgctgga cgatcccggt ccaggtgccc gacgtccgga tcggcagcgc gatcccggtg
      241 aggatgatgt ccacgccgga cgcgacgctg ctcgtccggc tgttgaagtg cggcgtgtac
      301 agcgccagct ccccggatcg ccggagctgg ttgatccggt tgatggcgaa ctggccgagc
      361 gtcgtcgtcg tgagcgtcgt cgtcaccagc ggcgagccga ggatcggccg tccgtccgcg
      421 ccgacgccga aggtcggccg gccggcggtc ccggcggtga tcagctcgcc ggcctcgacg
      481 tcgagcccgt tcggcgccga ctcggcgtcg ctcgagaagc ccgcccagac gtcgccgttg
      541 atcgcggcga tgacgcggtg ggcttcgaac gagtggctga gcgcctggct gctgacccgt
      601 tcgagaccgg tcacccgtcc gttggacagc gattcctcga acacgatcga ggggttggac
      661 tggtcgacct cgacgaagtt cacggcctgg ctgccgatcg tcgtcgtgat ccggccccag
      721 tcgtggtcga cgcccggcgc gagcggctcg cgcccggcgg agacgtacgg ggcgacgacg
      781 gccgccgacg cgaccgaggg tggaagcagc gagagcggcg cgcccgagac gatcaacgcg
      841 agggcgatcg tcggggcggc gaggggcctc ggcagcttgg gcaaacgtgc tctcggtagg
      901 aacgcgggga cgctgggtga cgggccggaa cccgggcgct tgctgccggt cagcctaccg
      961 catccgccga atcgggtgcg ttgccgacga gccgcgcggc catctcggac aggtgcgcgg
     1021 gcgtcgtgcc gcagcagccg ccgatgatcg tcgcgccggc ctcccgcatg acgacggcct
     1081 gggcggccat ctcggccgga tcgctgcgat agacggcccg catgtcgacc agctcgggca
     1141 tgccggcatt ggacttggcg acgagcagcg cgtcggggtc ggccgcccgc atccgggtga
     1201 ccacgccgac cagctcgtcc ggtccgttgc cgcagttccc gccgatcgcg tccgcgcccc
     1261 agctcgtgag cgaggtgacc gcctgctcgg gcgagacgcc catcatcgtg cggccgcggg
     1321 tgtcgaacgt catcgtggcc acgagcggga tgccgggcga agcgcgccgc acgccctcga
     1381 tggcagcctt gatctcggtc aggtcggaca tcgtctcgat ccagatcagg tccacgccgc
     1441 cggcgatcag cgccgcggcc tgctcggcga agacgtcgac cgcctccgcg tagtcgagcg
     1501 tgccggtggg cgccatgatc gccccgctcg gtccgatgtc gccggccacg agtgcgccgc
     1561 cgccgtgggc gtcgacctcg ccgcg
//
LOCUS       DATDDI010000319         3683 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_714489, whole genome shotgun sequence.
ACCESSION   DATDDI010000319 DATDDI010000000
VERSION     DATDDI010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_714489"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1423)
                     /locus_tag="VIU37_04575"
     CDS             complement(<1..1423)
                     /locus_tag="VIU37_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013252.1"
                     /translation="MADRFKIGEGFVSIDTEDDTSTGLARIKGSVDRFIDNVQAKVRS
                     GFKDGFDAAADAAERRMATFRRDVEGELDRIAAKRTRIDVDILSAAEKIIKLRKEAET
                     ATVDRKLKINAEIAAASADIKVLKREAEDLDGKKIELEAKLRNGPETLFEIKELDKAS
                     NDWIKTTLNMASSVGRIVGTISGLLSLLGPTVNGIVGASVATGQWLVAVSPLAALLPT
                     LAASVSVLGLTVKAVLPSLAESFSPVTDAAKELQKELGNAAQKGVSGLAEAFVKANFP
                     EIEKGTMRIAEAINYVVTKVLAWTATAEGQRAVGQIIDAAAGAAERLAPSIAALVISF
                     GNFVGRVGDPAIGALSNIFRDLMDKTNGWIDSLTREDITSGIDKVKDAAGAFTDKLKA
                     ARDVIEWMANNRDTITRISDALAGIGVVLGIATGGWVAAVAGAVTLILNHFEVVKQAA
                     SDVGKWFTNVWQTIANDPWVKAII"
     gene            complement(1438..1713)
                     /locus_tag="VIU37_04580"
     CDS             complement(1438..1713)
                     /locus_tag="VIU37_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013253.1"
                     /translation="MFYRIDGVADGEFGGLSSARFVQLCERLFAYRGAMRARAQQQAD
                     QDARERPAAAAGPARAPAAGRTGEVREVGSSRAELRRDPVLASVIDF"
     gene            complement(1776..2294)
                     /locus_tag="VIU37_04585"
     CDS             complement(1776..2294)
                     /locus_tag="VIU37_04585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013254.1"
                     /translation="MALIVNPQETSEGAEDPATAPDVAAVVLGRPHVEEEPSPQQPAG
                     APEWGTADAEQGPADGEQESDSIVLFTLDGINYYVPRKPGPNVALAYLRDVRHHGEEY
                     ARAGLLERFIGEDGMDALADYEDLKDEDMAAIWQLVEKHVLGGVNRGNRQARRAPADR
                     ARPRTSPAGKRA"
     gene            complement(2332..2895)
                     /locus_tag="VIU37_04590"
     CDS             complement(2332..2895)
                     /locus_tag="VIU37_04590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013255.1"
                     /translation="MATTSSNLVQGPADLYTATFGATEPADSAVASVPSASTWHDVGG
                     TLEGTTLTVTQEYAELVVDQLVDIPERRLTKRELTVASRMAEPTLDNFILALNGGTVT
                     ASAAYSSYDPDTASSVTQPTYKALMVDGWAPGTAMRRRLITRKALSVEAIETAWKKED
                     QSALSVTWASHYVSSVIKPFRLVDQLT"
     gene            complement(3015..3323)
                     /locus_tag="VIU37_04595"
     CDS             complement(3015..3323)
                     /locus_tag="VIU37_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013256.1"
                     /translation="MTGLFALYGPATGDLLTFGGRPIVHTSREELEWLLPSCRVVPVT
                     DQDLRRRSPLPAMPISEHPALAGLSWPLDRAEFRTDSRGGSGPPSGRIRLWTSVGTTG
                     "
     gene            complement(3320..>3683)
                     /locus_tag="VIU37_04600"
     CDS             complement(3320..>3683)
                     /locus_tag="VIU37_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013257.1"
                     /translation="LPKDPATWGTDRVFTTVQVAGGTPNNDVPIAAPVFEVTCWAAPA
                     VGGSRRPPWNEANARAEAVRAAVLAHRDVPRAVTLPAGYGPARVLQAAMRTEPRRALG
                     DRADYAAYTFDLQMWWTP"
BASE COUNT          519 a         1237 c         1252 g          675 t
ORIGIN      
        1 cgatgatcgc tttcacccac gggtcgttag cgatggtttg ccacacgttc gtgaaccact
       61 tcccgacatc ggaagcggcc tgtttgacga cctcgaaatg gttcaggatc agagtcaccg
      121 caccggcgac cgcggcgacc catccacccg tagcgatacc gaggacgacc ccaataccgg
      181 cgagggcatc tgaaatcctt gtgatggtgt ccctgttgtt cgccatccat tcgatgacat
      241 cgcgggcggc tttcaattta tccgtgaagg cgcccgcggc atctttcacc ttgtcgattc
      301 cggacgtgat gtcttcgcgg gtgagactgt cgatccaccc gttcgttttg tccatgaggt
      361 cgcggaagat gttggaaagt gctccgatcg ctgggtcacc gacgcggccg acgaagtttc
      421 cgaacgagat cacgagagcg gcgatcgagg gggccaggcg ctccgccgcg ccggccgccg
      481 cgtcgatgat ctgtccgacg gcgcgttgcc cttcggccgt cgcagtccat gcgaggacct
      541 tggtcacaac ataattgatc gcttcggcga tccgcatggt tcccttttcg atttcaggga
      601 agtttgcttt tacgaatgct tccgctaggc cggacacgcc tttctgtgcg gcgttcccga
      661 gttccttctg tagctccttc gctgcgtcgg tgaccggcga gaacgactcg gcgaggctgg
      721 gaagcaccgc cttgactgtg aggccgagga cggacactga cgccgcgagc gtgggcagga
      781 gcgcggccag tggcgacacg gcgaccagcc attgcccggt ggcgacagat gcgccgacga
      841 tgccgttgac ggtggggccg aggagtgaca ggagaccgga gatcgttccg acgatccgtc
      901 cgaccgatga cgccatgttg agggtcgttt ttatccagtc gttggacgct ttatcgagtt
      961 ccttgatctc gaatagggtt tctgggccgt tccttagttt cgcttcgagt tcgattttct
     1021 ttccgtcgag gtcctcggct tcccgcttga ggaccttgat gtcggcggat gctgcagcga
     1081 tctcggcgtt gatctttagc ttgcggtcaa ctgtcgcggt ttccgcttcc ttgcggagct
     1141 tgatgatttt ctctgcggcg gacaggatgt cgacgtcaat cctcgtgcgt ttcgcggcga
     1201 tgcggtccag ttcgccctcg acgtcgcggc ggaacgttgc cattctgcgt tccgccgcgt
     1261 ccgcggccgc gtcgaacccg tccttgaaac ctgaacggac cttcgcctgt acgttgtcaa
     1321 tgaaccggtc gacgcttccc ttgatgcggg ccaggccggt cgaggtgtcg tcctccgtgt
     1381 cgatggacac gaatccctcg ccgatcttga accggtcggc catggccgca cctctcgcta
     1441 gaagtcgatc acagacgcga ggaccgggtc acggcgcaac tccgcacgcg acgacccgac
     1501 ctcacgcacc tcacccgtcc ggccggccgc aggggcccgg gccgggcctg cagcagccgc
     1561 cgggcgctcc cgggcgtcct ggtccgcctg ctgctgcgcg cgggcccgca tcgccccccg
     1621 gtaggcgaac aggcgctcgc acaactgcac gaaccgcgcc gacgacagac ccccgaactc
     1681 cccgtccgcc accccgtcga tccggtagaa cacccggaaa tcggcgtcga tgtcgtcgag
     1741 gtagtcgggg atccacgcca gttcctcgcc acgggtcagg cccgcttccc cgccgggctg
     1801 gtcctcggcc tcgcccggtc cgccggtgcc cgccgggcct gacggtttcc ccggttcacc
     1861 ccgccaagga cgtgcttctc caccagctgc cagatcgcgg ccatgtcctc gtccttgagg
     1921 tcttcgtagt cggccagggc atccatgccg tcctcgccga tgaaccgctc gagcaggccg
     1981 gccctggcgt actcctcgcc gtggtggcgg acgtcgcgca ggtaggcgag ggcgacgttc
     2041 gggccgggct tacggggcac gtagtagttg atgccgtcga gggtgaacag gacgatgctg
     2101 tcgctctcct gctcgccgtc ggcgggcccc tgctccgcgt cggcggtgcc ccactccggg
     2161 gcgccggccg gctgctgcgg tgacggttcc tcctcgacgt gcgggcggcc gaggaccacg
     2221 gcggcgacat cgggtgccgt cgccgggtcc tcggcgccct cggacgtctc ctgcgggttc
     2281 acgatcaatg ccacggtgtt tctcctcctc gtggaacgtg gcggacaggg atcaggtgag
     2341 ctggtcgacc agccggaacg gcttgatcac cgacgagacg tagtggctgg cccacgtcac
     2401 cgacagggcc gactggtcct ccttcttcca cgccgtctcg atggcctcga cggacagggc
     2461 cttgcgggtg atgagccggc gccgcatcgc ggtaccgggc gcccacccgt cgaccatcag
     2521 cgccttgtac gtgggctgcg tcaccgacga cgccgtgtcc gggtcgtagc tcgagtaggc
     2581 cgcggacgcc gtcaccgtcc cgccgttcag ggcgaggatg aagttgtcga gggtcggttc
     2641 cgccatccgc gacgcgacgg tgagctcccg cttggtcagg cgccgctccg ggatgtccac
     2701 gagctggtcg acgaccagtt cggcgtactc ctgcgtgacg gtcagcgtgg tgccctcgag
     2761 ggtgccgccg acgtcgtgcc acgtcgacgc cgacgggacc gacgccaccg cggagtcggc
     2821 cggttcggtc gcgccgaacg tggcggtgta gaggtccgcg ggaccctgaa cgagattcga
     2881 cgaggtggtg gccatcgcct attccttccc ttccgtgatg ctgcctgccg gggtgcgggg
     2941 gtgcagcgcc cggggaatga caccgtcgta cggttcgtcc tcgtcgtaga ggattgcccc
     3001 ggcgcggtgc aggtctatcc agtcgtgccg accgacgtcc acaacctgat ccggccggaa
     3061 ggtggtcctg atccgccgcg ggaatcggtc cggaactctg cgcggtccag gggccacgac
     3121 aggcccgcca gggccggatg ctcgctgatc ggcatcgccg gcagcggcga ccggcggcgc
     3181 aggtcctggt cggtcaccgg gacgacccgg cagctgggca gtagccattc caactcctca
     3241 cggctggtgt ggacgatggg ccggcccccg aaggtcagta ggtcgccggt ggcgggcccg
     3301 tagagggcga acaggccggt catggtgtcc accacatctg caggtcgaag gtgtaggcgg
     3361 cgtagtcggc gcggtcgccg agggcccggc ggggttcggt gcgcatcgcg gcctgcagga
     3421 cccgtgccgg gccgtacccg gcgggcaggg tgacggcccg ggggacgtcg cggtgggcca
     3481 gcacagccgc gcgtacggcc tctgcgcggg cgttcgcctc gttccacggc ggccgccgcg
     3541 acccaccgac cgcgggggca gcccagcagg tcacctcgaa caccggcgcg gcgatcggca
     3601 cgtcgttgtt cggggtgccg ccggcgacct gcacggtggt gaacacccgg tcggtgcccc
     3661 acgtggcggg gtccttcggc agg
//
LOCUS       DATDDI010000320         1667 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_548166, whole genome shotgun sequence.
ACCESSION   DATDDI010000320 DATDDI010000000
VERSION     DATDDI010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548166"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1029
                     /locus_tag="VIU37_04605"
     CDS             <1..1029
                     /locus_tag="VIU37_04605"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY6013258.1"
                     /translation="VLENNSADTVLILAGDHIYKMDYQPFVAAHRRHRADVTIAVRRV
                     PLAEASRMGILGMDENDRVVEWQEKPKQPKSDLASMGVYVFNKKTLQRWLSEDLVDFG
                     ANVVPAMLDAGARVFGYRYNGYWQDVGTIQSFWEANMALLDDDPALDLYDKEWVIHTR
                     SEERAPAKVGPTAQVHRSLISHGCVIAGTVVNSVLSPGVRVDVGAVVRESIVMFDSVI
                     RSGAVVDRAILDKEVVIGPGAIVGDGPIDDRPNRHEPGRLNTGITVVGKHAIVPRGAR
                     IGRNVRIAADVRTSDFTGRVVRSGESVDAGSGRSRARSARASAESAPEEHAIRAIGGG
                     GRQVAPED"
     gene            1104..>1667
                     /locus_tag="VIU37_04610"
     CDS             1104..>1667
                     /locus_tag="VIU37_04610"
                     /inference="COORDINATES: protein motif:HMM:NF022182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HEY6013259.1"
                     /translation="MSSAESGSRPVGPADVEGWFTELGLASSERAEREGIASWDLVLD
                     GRRRFGLRITVILDPALAIICWAHYAPPINDMFRKSYRKLLRWNDEFPFAKFSVGEDG
                     RPLLAVELPIALAGADELGLAIARILGIADQLLEESREWLWIGGRIPDQGDRRSGNAA
                     FLDRYAGRLAELGGLPEPDAAGPAPGPT"
BASE COUNT          242 a          587 c          594 g          244 t
ORIGIN      
        1 gtgctggaga acaacagcgc cgacaccgtg ctgatcctgg ccggcgacca catctacaag
       61 atggactacc agccgttcgt ggcggcccat cgtcgccacc gcgcggacgt gacgatcgcc
      121 gtccggcgcg tccccctggc cgaagcctcg cggatgggga tcctcggtat ggacgagaac
      181 gaccgggtcg tcgagtggca ggagaagccc aagcagccca agagcgatct cgcctcgatg
      241 ggggtctacg tcttcaacaa gaagaccctc cagcgctggc tgtcggagga cctcgtcgac
      301 ttcggggcca acgtcgtccc ggccatgctc gacgccggtg cacgcgtctt cggctaccgc
      361 tacaacggct actggcagga cgtcggcacg atccagtcgt tctgggaggc caacatggcg
      421 ctcctcgacg acgacccggc gctcgacctg tacgacaagg aatgggtcat ccacacgcga
      481 tccgaggagc gcgccccggc caaggtgggg ccgaccgccc aggtccatcg cagcctgatc
      541 agccacggtt gcgtgatcgc gggcacggtg gtcaactccg tgctgtcgcc cggcgtcagg
      601 gtcgacgtcg gtgccgtggt gcgcgagtcg atcgtgatgt tcgactcggt catccggtcg
      661 ggcgccgtcg tggaccgcgc gatcctcgac aaggaggtcg tcatcggccc gggcgcgatc
      721 gtcggcgacg gcccgatcga cgatcggccg aaccgccacg agccgggtcg cctgaacacc
      781 gggatcaccg tcgtcggcaa gcacgcgatc gtgccgcgtg gggctcggat cgggcgcaac
      841 gtccggatcg cggccgacgt ccggacctcc gacttcaccg gccgggtcgt gcgcagcggc
      901 gagtccgtgg atgccggttc gggccgctcg cgagcgagat cggcgcgagc atcggccgaa
      961 tcggcaccgg aagagcacgc gatccgggcc atcggcggcg gcggtcgtca ggtcgccccc
     1021 gaggattgag cccggtccgc ccgggccctt cgcccgcgga cccgggccct gccggcgtcg
     1081 atctcggata gactccccgg gccatgtcat ccgccgagtc gggctcgcgc cccgtgggcc
     1141 ccgccgatgt cgagggctgg ttcaccgagt tgggccttgc ctcgtccgag cgcgccgagc
     1201 gcgaggggat cgccagctgg gacctcgtgc tcgacggccg ccgccggttc gggttgcgga
     1261 tcacggtgat cctggatccc gcgctggcga tcatctgctg ggcgcactac gcgccgccga
     1321 tcaacgacat gttccgcaag tcgtaccgca agctgctgcg ctggaacgac gagttcccgt
     1381 tcgccaagtt ctcggtcggg gaggacgggc ggccgctcct ggcggtcgag ctgccgatcg
     1441 cgctggccgg cgccgacgag ctcggcctgg cgatcgcgcg gatcctcggc atcgccgacc
     1501 agctcctcga ggaatccagg gagtggctgt ggatcggtgg ccggatcccg gaccagggtg
     1561 accgccgctc cgggaacgcg gccttcctcg atcgctacgc cggacggctg gccgagctgg
     1621 gcgggctgcc agagccggac gccgccgggc cggcgccggg ccccacc
//
LOCUS       DATDDI010000321         2346 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_589669, whole genome shotgun sequence.
ACCESSION   DATDDI010000321 DATDDI010000000
VERSION     DATDDI010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589669"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VIU37_04615"
     CDS             <1..537
                     /locus_tag="VIU37_04615"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6013260.1"
                     /translation="ERFGRLDIVVNAVGGGAGKVVFDAECYPRDAWDWIMELNVRSTL
                     VATQAAVKSMIAAGHGGRVVNISSVRAQLGINTGYSAYVAAKGAISSLTRQWATEWAK
                     YGIRVNAIMPTFVDTPQVASLLADPTFKAGVVGRIPLGRVGETSDLVGAAIFLVSDAS
                     SFVTGQILGIDGGLTATQ"
     gene            558..1451
                     /locus_tag="VIU37_04620"
     CDS             558..1451
                     /locus_tag="VIU37_04620"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6013261.1"
                     /translation="MPPATLDLERVTPNIYTTTRLRGCNPSFVTTSDGVVVIDTPQLP
                     TRAVAMRAEAESHGPIRYVINTEHHVDHIFGNYWFKGMPVVEHQGLYDNFMVVTPDLD
                     PYAYALEAVPTDDPDAAPIVPDRDTYYADPNKGTIVFTGDLTLHVGDHTFRLLHTPGH
                     TPGQVAVHVPEERAVFTGDTIFHGCQTWLMTSNVDQWLEALERIRQLDVDHLIPGHGP
                     VTNLKSVDAQRHVLLEWKAAVAEAVAKGWTREETVERVRFDDKFGPVDIGQGYMMDHI
                     QTLNAGSLWGKLTALGYARGR"
     gene            complement(1512..>2346)
                     /locus_tag="VIU37_04625"
     CDS             complement(1512..>2346)
                     /locus_tag="VIU37_04625"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY6013262.1"
                     /translation="RTDGDGDRMHWHEYLEIALCLEGTGRFVFGRRAHAIEPGDVFLV
                     DNSHPHVARPDPGGSLRLLLVLFRPELVAGPGCRAFDSGYLAPFRAADERALQRIPCG
                     TPLAAELAPILHELASVAARRDPDDRHVLDAVLRLALGVLVRNCPTNEDEVGRTDAAR
                     REQIRPVLSYVEAHCRERVTLDEVAEVVHLSPSRVRHVFRDVSGVGFKEYATRVRLTE
                     AKRLLLATDLSVAEVAHSVGYTNVHQFYTVFHRYSSLLPAEYRRYYTPAGSGEREAVT
                     G"
BASE COUNT          373 a          849 c          806 g          318 t
ORIGIN      
        1 gagcgcttcg gccggctcga catcgtggtc aacgcggtcg gcggtggcgc cggcaaggtc
       61 gtgttcgacg ccgagtgcta cccccgcgac gcgtgggact ggatcatgga gctcaacgtc
      121 cggagcaccc tggtcgcgac ccaggccgcg gtcaagtcga tgatcgcggc cgggcacggc
      181 ggacgggtgg tcaacatctc gtcggtccgc gcccagctcg ggatcaacac cggctactcc
      241 gcgtacgtcg cggccaaggg cgccatcagc tcgctgaccc gccagtgggc gaccgagtgg
      301 gcgaagtacg ggatccgggt caacgcgatc atgccgacct tcgtggacac gccacaggtg
      361 gcgtcgctcc tggccgatcc gacgttcaag gcgggggtcg tcggccgcat cccgctcggc
      421 cgggtcggcg agacgagcga cctggtcggc gccgcgatct tcctcgtctc cgacgcctcg
      481 tcattcgtga ccggccagat cctcggtatc gacggcggcc tgaccgccac gcagtagcac
      541 ctggagagcc caaccccatg ccacccgcca cgctggacct cgaacgcgtc acgccgaaca
      601 tctacacgac gacccggctg cgcggctgca acccgagctt cgtgaccacc tcggacggcg
      661 tggtcgtcat cgacacgccg cagctcccga cccgcgcggt cgcgatgcgc gccgaggccg
      721 agtcgcacgg cccgatccgc tacgtcatca acaccgagca ccacgtcgac cacatcttcg
      781 gcaactactg gttcaagggc atgccggtcg tcgagcacca ggggctctac gacaacttca
      841 tggtcgtgac gccggacctc gacccgtacg cgtacgcgct cgaggcggtg ccgacggacg
      901 accccgacgc ggcccccatc gtgcccgatc gcgacacgta ctacgccgac ccgaacaagg
      961 gcacgatcgt gttcaccggc gacctcacgc tccacgtcgg cgaccacacg ttccggctcc
     1021 tgcacacgcc gggccacacg cccggacagg tcgcggtcca cgttcccgag gagcgcgcgg
     1081 tcttcaccgg agacacgatc ttccacggct gccagacgtg gctgatgacc tccaacgtcg
     1141 accagtggct ggaggcgctc gagcggatcc gccagctcga cgtcgaccac ctgatccccg
     1201 gccacggccc ggtgacgaac ctcaagtccg tcgatgccca gcggcacgtc ctgctcgagt
     1261 ggaaggccgc cgtcgccgag gccgtcgcga agggctggac ccgcgaggag acggtcgagc
     1321 gggtgcgctt cgacgacaag ttcggcccgg tcgacatcgg gcagggctac atgatggatc
     1381 acatccagac gctcaacgcc gggtcgctct ggggcaagct caccgcgctc gggtacgccc
     1441 ggggccgctg acccgcgacg atcgcgatcg cggtggcgtc gcggcggcgc ctggcccacg
     1501 gccgtcgggt cctacccggt gaccgcctcg cgctctcccg atccggccgg cgtgtagtac
     1561 cggcgatact cggccggcag caacgagctg tagcggtgga acaccgtgta gaactggtgc
     1621 acgttggtgt agccgacgct gtgggcgacc tcggccacgc tgagatcggt ggcgagcagg
     1681 agccgcttcg cctcggtcag ccggacccgg gtcgcgtact ccttgaagcc cacgccactg
     1741 acgtcccgga acacgtgacg gacgcgcgag ggactcaggt ggacgacctc ggcaacctcg
     1801 tcgagggtga cccgctcgcg gcagtgcgcc tccacgtacg acaggaccgg ccggatctgt
     1861 tcgcgccggg cggcatcggt gcggccgacc tcgtcctcgt tcgtcgggca gttgcgcacc
     1921 aggacgccga gggcgagccg taacaccgcg tccaggacgt gccggtcgtc cggatcgcga
     1981 cgggccgcga cggacgcgag ctcgtggagg atcggcgcca gctcggcggc cagcggcgtc
     2041 ccgcacggga tccgttgcag cgctcgctcg tcggccgcgc ggaacggggc gaggtagccg
     2101 gaatcgaacg cccggcaccc cgggccggcc accagctccg gacggaacag cacgaggagc
     2161 aggcggagcg agccaccggg gtcggggcgg gcgacgtgcg ggtgcgagtt gtcgaccagg
     2221 aagacgtcgc cgggctcgat cgcgtgggct cgccggccga acacgaaccg gcccgtgccc
     2281 tcgaggcaga gcgcaatctc caggtactcg tgccagtgca tccggtcgcc gtcgccatcg
     2341 gtccgg
//
LOCUS       DATDDI010000322         2407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_152750, whole genome shotgun sequence.
ACCESSION   DATDDI010000322 DATDDI010000000
VERSION     DATDDI010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152750"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(314..520)
                     /locus_tag="VIU37_04630"
     CDS             complement(314..520)
                     /locus_tag="VIU37_04630"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEY6013263.1"
                     /translation="MTDLLIPLLIILVLVVMWRGPKTLPKLGEALGRGVREAKTEAAK
                     AQDEIQARVGDANKPTGDGTDPPA"
     gene            583..2316
                     /locus_tag="VIU37_04635"
     CDS             583..2316
                     /locus_tag="VIU37_04635"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013264.1"
                     /translation="MLLVFGPRSASYDFGPHHPLTPRRFGPGIDLLRTLGAEPGLAPE
                     PAADEELLRCHERRYLEVVKRFSVSPFGEDARSGIGEGGDDPPFAGMHEAGAMVAGGS
                     LRAVEAVLRGDVEHAFHPGGGLHHAMPARASGFCIYNDPALAIARARQDGLRVLYVDL
                     DVHHGDGVQAIHWDDPGVLTLSFHESGRYLFPGTGGVGELGEGVAAGTSVNVQMEPGT
                     GEGAWLAAVQLLVPELAAAFGPDIVVSQHGADSHAWDPLAHLRVTTTAMGLAARVVDA
                     VAHRFAGGRWLATGGGGYDAYRVVPRSWSLVWLAGMHREAPAATAADWRERWAAEAAR
                     YGQAPLPGTFDDGPNAGLPMDDGQAAAEARSRETTALVRRLVVPRLLREAHGRGWWDP
                     AARSAASPGAASPVASSGSGPSGAGSPGPVIVSGIDAAAWSRLSLAPRVVPPADPDAG
                     HALILAAIRDGATVSVAIAGDLVVGAVVAAPPGPEGRRDLLALGVAPAHRRAGLATRL
                     LADGLADRAEITLAERDPVEPLDAGLRGRVAAVLLERAGFALGRAGDAVSSSGPSSVV
                     GIRGPGRPNHE"
BASE COUNT          282 a          853 c          911 g          361 t
ORIGIN      
        1 gtttgacacg actttcagcc cgtcgcttta atgtcccgtg cgcctttaag ccgcgacata
       61 ccactgccat gccaaagcaa gaaactctga ccccgcgcca gcgcgtccat ctggccctcg
      121 agcaccgaat cccggatcgg gtgccgattg acctgggcgg caaaagtccg gccgccgatc
      181 gagagcggcg tccggtgcga tccgggtccg ggtcgggcgg tcagggcctc gagctcgtca
      241 ggcgtcatcg gacagcgttg tggagcagcg tcggtcagcg cggcgcgtga cgtccgctga
      301 cggctcggcc gcctcaggca ggcgggtcgg tgccgtcgcc ggtcggcttg ttcgcgtcgc
      361 ccacccgagc ctggatctcg tcctgggcct tggcggcttc ggtcttggcc tcccggacac
      421 cccggccgag cgcctcgccg agcttgggca gcgtctttgg cccgcgccac atgacgacca
      481 gcaccaggat gatgaggagc gggatgagca gatcggtcat gggcggatgg tacatcgcgg
      541 tcgcgcgccg ccgatcacgc tcgcggcggt atcgtgcgac ccatgctcct ggtcttcggg
      601 ccacgctccg ccagctacga cttcggtccg caccacccgt tgacgccgcg ccggttcggt
      661 ccggggatcg acctgctccg gacgctcggc gcggagcccg ggctggcccc cgagccggcg
      721 gccgacgagg agctgctgcg ctgccacgag cggcgctacc tcgaggtcgt caagcggttc
      781 tcggtctcgc cgttcggcga ggacgcccgg tccgggatcg gtgaaggcgg tgacgatccg
      841 ccctttgccg gcatgcacga ggcgggcgcg atggtcgccg gcgggtcgct ccgggcggtc
      901 gaggcggtac tccgtggcga cgtcgagcac gccttccacc ccggcggcgg cctgcaccac
      961 gcgatgccgg cccgggcgtc cggcttctgc atctacaacg acccggcgct ggcgatcgcg
     1021 cgggcgcggc aggacgggct gcgggtcctc tacgtggacc tggacgtcca ccacggcgac
     1081 ggggtccagg cgatccattg ggacgacccc ggggtgctga cactgtcctt ccacgagagc
     1141 gggcgatacc tgttccccgg cacgggcggg gtgggggagc tgggcgaggg cgtcgcggcc
     1201 gggacttcgg tcaacgtgca gatggagccc gggacgggcg agggtgcctg gctggcggcc
     1261 gtccaactgc tggtcccgga gctcgcggcc gccttcggtc ccgacatcgt cgtgtcgcag
     1321 cacggggccg attcgcacgc ctgggatccg ctggcgcatc tgcgggtgac gacgaccgcg
     1381 atgggcctgg cggcccgggt cgtggatgcc gtggcgcatc ggtttgctgg cgggcgctgg
     1441 ttggccaccg ggggtggtgg gtatgacgcc taccgggtgg tcccgcgatc ctggagcctg
     1501 gtctggctgg cggggatgca tcgggaggcg ccggccgcga cggccgcgga ctggcgggag
     1561 cgatgggccg ccgaggccgc ccggtacggc caggcgccgc tgccggggac gttcgacgac
     1621 ggcccgaatg cggggttgcc gatggacgac ggtcaggcag ccgccgaggc ccgctcccgg
     1681 gagacgaccg cgctcgtgcg gcggcttgtc gtgccgcggc tcctccgcga ggcgcatggg
     1741 cgcggctggt gggatccggc ggcgcggtcg gcggcgtccc ccggcgccgc gtcacccgtg
     1801 gcgtcgagcg ggtcgggccc cagcggagca ggctctcccg gtcccgtcat cgtgtccggc
     1861 atcgatgccg cggcctggtc gcgtctgtcg ctcgccccgc gcgtcgtccc gcctgccgat
     1921 cccgatgccg gtcacgccct gatcctggct gcgatccgcg acggcgcgac agtgtcggtg
     1981 gcgattgccg gcgacctcgt cgtgggtgcg gtcgtcgccg cgccgcccgg accggaaggc
     2041 cgccgcgacc tgctcgccct gggcgtcgcg ccggcccatc ggcgagccgg cctcgccacg
     2101 cgactgctcg ccgacgggtt ggcagaccga gccgagatca cccttgccga gcgggacccg
     2161 gtcgagccgc tggacgccgg ccttcgaggc agggtcgccg cggtgctgct cgagcgcgcg
     2221 ggattcgcgc tcgggcgcgc cggtgacgcc gtctcctcga gcggcccatc gtccgtcgtc
     2281 gggatccgcg gcccgggaag gccgaatcac gaatagaacg gctggtctat ttgcggaaga
     2341 cggcctatac tgaccgtccc gtgggagccc cgatccgaac ccgacgcccg ccacgatcga
     2401 cgctgcc
//
LOCUS       DATDDI010000323         4407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_131999, whole genome shotgun sequence.
ACCESSION   DATDDI010000323 DATDDI010000000
VERSION     DATDDI010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4407
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131999"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3182
                     /locus_tag="VIU37_04640"
     CDS             <1..3182
                     /locus_tag="VIU37_04640"
                     /inference="COORDINATES: protein motif:HMM:NF027518.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000030 - mannosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006493 - protein O-linked glycosylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phospholipid carrier-dependent
                     glycosyltransferase"
                     /protein_id="HEY6013265.1"
                     /translation="QLLLGYDDGRVATLDATALGSVAVDLGPSPKALATLDHPVAHLL
                     LTADGTSVVAASAGRLSVVDLISGEVAGSLDLPGIADLALGGSGTALVATLADVPDPK
                     AAASSLADILGGTAADYETKLASPAAGTTVVLGSPGTGDVRKALDKAIADGHLPGIGV
                     EDVPRVAVATSGGVAFVDPARVSLVTTMPLEGGAHGLAMVTGLDNPRLYATTGGPDAP
                     GYEVFAIGGDAAKESPVDQGKHPLPAPATRIVFDDATQMVHILGRIPGSTGSDADPWT
                     VYVVEPHANAVFADARLPAGFAPSALAADVAADYPSADRQQLLVFAGDGTAASIAIGS
                     HAFAWRLPGVIAGALTAGLLFLLARILFRRRLVAVLAGLFVLVDGMFFVQARIGMNDV
                     YVGLFIVAAYTVFAAIWTGWWRGRLAFWLGMPIVGVLLGLALASKWVAAYAIGALVLL
                     LLVRSALGRVLAILGLVGLTSVLGYMAISVPGGGGFGNLTFLLIMVAITLLAVVVAIL
                     HPIAWTDDELRLAGVAPGALGTLMFFAALAVGKLQTAYVLGSVSVTPLLLAIALGLGS
                     LVVAGLFSLGGRRGFGPLAGPPDPDDPVRLLEPPAPAPDGWLRPGTSLGLPLAWAAAC
                     LVALPLAVYVLSYLPWAMVEGHRIVSAWPGLWADWPPGHTGQTLLDLTGQMYRYHNGL
                     TDPHPASSPWWAWPLDLKPVWFYQEGLAASTSASIYDAGNVVIWWLGIPAMAFAGLMA
                     YRRRSLALALIAIGFAAQWISWARIDRAAFQYHYYTALPFVVLGLAYFVAELWHGASR
                     YTWLVARVAAALAIILPALLWVLSRPLCGFVDVVSVNPGSQACPAVIPDFVLTSRTAG
                     LTIVIAVGLIALVLRFLDFDAGGRGARDLTAAFTSLAKVGGALIVALIVAALLPDSPI
                     LTLTNLPVEPIALMIGVPLGYFALQVLGARDPRRFVAGYVVAAVGWFAILYPNVAALP
                     LPASIVNAYQGILPTYLYAFQFPVSKIDRNIPTPILTPTFALLAAALVVACLVVAYST
                     WVWRVALADSTASSSADEADDGRILTGGA"
     gene            complement(3083..4333)
                     /locus_tag="VIU37_04645"
     CDS             complement(3083..4333)
                     /locus_tag="VIU37_04645"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6013266.1"
                     /translation="MKIGLVCPYIYPESGGVAQHVRFLYENLRLRGHDVRIITASHGP
                     QRASEGDILRIGVGFSMPTNGSVGTLTFSPRYIVQVRRMIERERFDLLHFHEPFVPFL
                     SLFLLRESRSVNVATFHAYAGFSPSYELGSRVMGGYAARLHGRIAVSAAARHFIDRFF
                     PGDYKVIPNGVDVPRFASAVPIARWQDGTPNVLFVGRHEPRKGLLDLLKAHRILRKTG
                     AGNRLLVVGSGPQEREARRYVATRGLQEVEFLGRVSDGEKAQLFRTVDVFAAPATGRE
                     SFGIVLLEAMAAGAPIVASDIHGYKGVVRRGREGLLVPPHEPKELAAAIARLLADPAL
                     RAQMSAAGRLRAEDFSWPRVAARVEEYYGFVIRRLAATGSLPEDFRAEVPQAPPVRIR
                     PSSASSAEDDAVESASATRQTQVE"
BASE COUNT          518 a         1626 c         1563 g          700 t
ORIGIN      
        1 ggcagctgct cctcgggtat gacgacggcc gggtcgcgac gctggacgcc acggcgctcg
       61 ggtcggtcgc ggtggacctc ggcccgtccc ccaaggccct ggccaccctc gaccatcccg
      121 tcgcgcacct cctgctgacc gccgacggga cgtcggtcgt ggccgcctcg gccggccggc
      181 tgagcgtggt cgatctcatc agcggcgagg tggccgggag cctggacctg ccggggatcg
      241 cggatctcgc cctcggcggc tccgggacgg ccctcgtggc aaccctcgcc gacgtcccgg
      301 acccgaaggc ggcggcgtcg tcgctcgcgg acatcctggg cgggaccgcc gccgactacg
      361 agacgaagct ggccagcccg gcggcgggga cgacggtcgt gctcgggagt cccgggaccg
      421 gggacgtccg caaggcgctc gacaaggcca tcgccgacgg gcacctgccc ggcatcggtg
      481 tcgaggacgt gccgcgtgtc gccgtcgcca cgagcggcgg cgtcgcgttc gtcgaccctg
      541 cccgtgtctc gctcgtcacc accatgccgc tcgagggcgg cgcccatggc ctggcgatgg
      601 tcaccggcct ggacaacccg cggctgtacg ccacgaccgg tggcccggac gccccgggat
      661 acgaggtctt cgccatcggc ggggacgcgg cgaaggagag cccggtcgac cagggcaagc
      721 acccgctccc ggcgccggcc acccggatcg tcttcgacga cgccacccag atggtccaca
      781 tcctgggcag gatcccgggc tcgaccgggt cggacgcgga tccatggacg gtctacgtcg
      841 tcgagccgca cgccaacgcc gtcttcgccg acgcgcggct gccggccggg ttcgccccat
      901 ccgcgctcgc cgccgacgtc gccgccgact atccgtcagc cgatcgccag cagctgctcg
      961 tcttcgccgg cgacggcacg gccgcgtcga tcgcgatcgg ctcccacgcc ttcgcctggc
     1021 gcctgcccgg cgtgatcgcc ggggcgctga ccgccggcct gctcttcctg ctggcacgga
     1081 tcctgttccg gcgccggctc gtggcggtcc tggccggcct gttcgtgctc gtcgacggga
     1141 tgttcttcgt gcaggcgcgg atcggcatga acgacgtcta cgtcgggttg ttcatcgtgg
     1201 cggcgtacac ggtctttgcc gcgatctgga ccgggtggtg gcgcggcagg ctggcgttct
     1261 ggctcggtat gccgatcgtg ggcgtcctcc tggggctcgc gctggcgagc aaatgggtcg
     1321 ccgcctacgc gatcggcgcg ctggtgctcc tcctgctcgt ccgcagcgcg ctcggccgcg
     1381 tgctcgcgat cctggggctg gtcggattga cgtccgtgct cggctacatg gcgatcagcg
     1441 tgcccggcgg gggagggttc gggaacctga cgttcctgct gatcatggtc gccatcaccc
     1501 tgctggccgt ggtcgtcgcc atcctccacc ccatcgcctg gaccgacgac gagctccggc
     1561 tcgcgggcgt cgctcccggc gcgctcggga cgctcatgtt cttcgcggca ctggcggtcg
     1621 ggaagctgca gaccgcttac gtcctcggct cggtctcggt cacgccgctg ctgctggcca
     1681 tcgcgctcgg actcggctcg ctggtcgtcg ccgggctctt ctcgctcggc gggcgccgcg
     1741 ggttcggtcc gctggccggc ccaccggacc ccgacgatcc ggtccgcctg ctcgagccgc
     1801 cggcccccgc ccccgacggc tggctccggc cgggcacgag cctgggcctg cccctggcct
     1861 gggcagcggc ctgcctggtc gccctgccac tggccgtcta cgtgctgtcg tacctgccgt
     1921 gggcgatggt cgaggggcac cggatcgtgt cggcctggcc ggggttgtgg gcggactggc
     1981 cgcccgggca caccggccag accctgctgg acctgaccgg ccagatgtac cgctaccaca
     2041 acggcctgac cgacccgcac ccggcgtcct caccatggtg ggcctggccg ctcgacctca
     2101 agccggtctg gttctaccag gagggcctgg cggcatccac ctcggcctcg atctacgacg
     2161 cgggcaacgt cgtgatctgg tggctgggga tcccggccat ggccttcgcg gggctcatgg
     2221 cgtaccggcg gcgcagtctg gcgctcgcgc tgatcgcgat cgggtttgcc gcccagtgga
     2281 tctcctgggc gcggatcgac cgcgcggcct tccagtacca ctactacacc gcgctcccgt
     2341 tcgtggtcct cggcctcgcc tacttcgtgg ccgagctctg gcacggcgcg tcgcggtaca
     2401 cgtggctcgt cgcccgggtc gccgcggcgt tggcgatcat cctgccggcg ttgctctggg
     2461 tcctgtcgcg gccgctgtgc gggttcgtcg acgtcgtgtc ggtgaacccg ggctcgcagg
     2521 cctgccccgc ggtcatcccg gacttcgtcc tgacctcgcg gacggccggc ctgacgatcg
     2581 tgatcgcggt cggcctcatc gcgctcgtgc tgcgcttcct cgacttcgac gccggtggac
     2641 ggggcgcccg cgacctgacc gccgcgttca cctcgctcgc caaggtcggc ggtgccctga
     2701 tcgtggcgct catcgtggcc gcgctgctcc ccgacagccc gatcctgacg ttgaccaacc
     2761 tgccggtcga accgatcgcg ctgatgatcg gggtcccgct cgggtacttc gcgctccagg
     2821 tcctcggggc gcgcgatccg cggcggttcg tggcgggcta cgtcgtggcg gcggtgggct
     2881 ggttcgcgat cctctacccg aacgtcgcgg ccctgccgct cccggcgtcg atcgtgaacg
     2941 cctaccaggg gatcctgccg acctacctgt acgctttcca gttcccggtc agcaagatcg
     3001 atcgcaacat ccccacgccg atcctgacgc cgacgttcgc gctgctcgcc gcggcgctcg
     3061 tcgtcgcctg cctggtcgtc gcctattcga cctgggtctg gcgcgtcgcg ctggccgatt
     3121 cgacggcgtc gtcctccgcc gacgaagccg acgacgggcg gatcctgacc ggcggggcct
     3181 gaggcacctc cgcccggaag tcctcgggca gcgatccggt ggcggccagc cggcggatga
     3241 cgaacccgta gtactcctcg acccgtgccg ccaccctggg ccagctgaag tcctcggcgc
     3301 gaagccggcc ggcggcactc atctgcgcgc gcagcgcggg atccgcgagc agccgcgcga
     3361 tcgcggcggc aagctccttg ggctcgtggg gcggcacgag caatccctcc cggccgcgcc
     3421 ggacgacgcc cttgtagccg tggatgtccg acgccacgat cggcgcgccg gcggccatcg
     3481 cctcgagcag cacgatcccg aacgattcgc gaccggtggc cggcgccgcg aacacgtcga
     3541 ccgtccggaa cagctgggcc ttctcgccgt ccgacacgcg gccgaggaac tcgacctcct
     3601 ggagcccgcg cgtcgcgacg tagcgccgcg cctcgcgctc ctgcggtccg gacccgacca
     3661 ccagcagccg gttcccggcg ccggtcttgc gcaggatccg gtgggccttg agcaggtcga
     3721 gcaggccctt gcgtggctcg tggcgcccga cgaacaggac gttcggcgtg ccgtcctgcc
     3781 agcgggcgat cggcaccgcc gaggcgaacc ggggcacgtc gacgccgttc gggatgacct
     3841 tgtagtcgcc ggggaagaag cggtcgatga agtggcgggc ggccgcgctg accgcgatcc
     3901 ggccgtgcag ccgcgcggcg tagccaccca tcacccggct gccgagctcg taggagggcg
     3961 agaagccggc gtaggcatgg aacgtcgcca cgttgacgct gcgcgattcc cggagcagga
     4021 agagcgacag gaacggcacg aatggctcgt ggaagtggag caggtcgaag cgctcgcgtt
     4081 cgatcatccg gcggacctgg acgatgtagc gcggcgagaa cgtgagcgtc ccgaccgagc
     4141 cgttggtcgg catgctgaag ccgacgccga tccgcaggat gtcgccttcc gaggcgcgct
     4201 gcgggccgtg gctggcggtg atgatccgga cgtcgtgtcc gcgcaggcgc aggttctcgt
     4261 agaggaaccg gacgtgctgg gcgacgccgc ccgattccgg gtagatgtac ggacagacga
     4321 gcccgatctt cacggctgct tgcgctcctc cggccctgcc tgctcgaacc gcggcggccg
     4381 gagccgcccg ccgggatagc cgtgatc
//
LOCUS       DATDDI010000324         1809 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_527142, whole genome shotgun sequence.
ACCESSION   DATDDI010000324 DATDDI010000000
VERSION     DATDDI010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527142"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VIU37_04650"
     CDS             <1..462
                     /locus_tag="VIU37_04650"
                     /inference="COORDINATES: protein motif:HMM:NF015922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HEY6013267.1"
                     /translation="GVIGIRLAREGDYVVGMSVVQQDTDLLVLTETGYGKRVPLGEFR
                     PMHRGSQGVRLISLEGRKTGHVAAVQQVTDVDEELLLISAGGQVVRTDVRTINRQHAQ
                     ARGVITMRLNEGDKVVGIAAFRAGLAEQDGMGDDGGPETAGPDPTGTGSGG"
     gene            512..1597
                     /locus_tag="VIU37_04655"
     CDS             512..1597
                     /locus_tag="VIU37_04655"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:NF002320.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEY6013268.1"
                     /translation="MYADQFEIYHGNSNPDLARKICRYLGTEPGRAEVFQFANENIFV
                     KILENVREKDVFLVQPTNHPVNQSIMELLIMIDAFKRASAGRITAVIPFYAYGRSDKK
                     DQPRVPITARLIADMITVAGADRVLTMDLHQGQIQGFFNIPVDELTAVHMLSNYYRHK
                     RIEDPVVVTDLGFAKRARTFAELLDAPLAIIEKRRVGNLDRAELMNVIGDVKGKRAII
                     VDDEIDTAGTLVEIVRALEREGVTEIYACATHGVLSDPAVDRIRDSSLREIVLTDSVP
                     LPERKRLPKITTLSVAPLIGEAIKRIHRGESVGALFSSEVSLTQEMLLWEDGSEGRLD
                     TREDGGSDDPEPPTAAMAASASAQVRD"
     gene            1597..>1809
                     /locus_tag="VIU37_04660"
     CDS             1597..>1809
                     /locus_tag="VIU37_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013269.1"
                     /translation="MTLQLHRPDGEGGLEPRPVSDQNWRNQLRSPRWGRSLPGSRLPD
                     LRNTEMNPTSRLRSVLFWAGLGLLTFV"
BASE COUNT          312 a          635 c          606 g          256 t
ORIGIN      
        1 ggcgtcatcg gcatccggct ggcccgcgag ggcgactacg tcgtcggcat gagcgtggtc
       61 cagcaggaca ccgacctcct cgtgctgacc gagacgggct acggcaagcg ggtcccgctg
      121 ggcgagttcc gcccgatgca ccggggctcg cagggcgtcc gcctgatcag cctcgagggc
      181 cgcaagacgg gccatgtcgc ggccgtccag caggtcaccg acgtggacga ggagctgttg
      241 ctcatctccg ccggcggcca ggtcgtccgg accgacgtcc ggaccatcaa ccgccagcac
      301 gcccaggccc gcggcgtcat caccatgcgc ctcaacgagg gcgacaaggt ggtcggcatc
      361 gccgcattcc gggcggggct tgcggagcag gacggcatgg gcgacgatgg cggccccgaa
      421 acggccgggc ccgacccgac cggcacgggg agcggcgggt gacgccgtcg tgacgggcct
      481 gtcggccctg ggcggacggg aggcgacgcg cttgtacgca gatcagttcg agatctacca
      541 cggcaactcg aacccggacc tcgcgcgcaa gatctgccgc tacctcggca cggagccggg
      601 gcgcgcggaa gtcttccagt tcgccaacga gaacatcttc gtcaagatcc tggagaacgt
      661 ccgcgagaag gacgtgttcc tggtccagcc gaccaaccac ccggtcaatc agtcgatcat
      721 ggaactgctg atcatgatcg atgccttcaa gcgggcgagc gccggccgga tcaccgcggt
      781 catcccgttc tacgcctacg gccggtcgga caagaaggac cagccccggg tgcccatcac
      841 cgcccggctg atcgccgaca tgatcacggt ggccggcgcg gaccgggtcc tgaccatgga
      901 cctccaccag ggccagatcc agggcttctt caacatcccg gtcgacgagc tgaccgcggt
      961 ccacatgctg tcgaactact accggcacaa gcggatcgag gatcccgtcg tggtgaccga
     1021 cctcggcttc gccaagcggg ctcgaacgtt cgccgagctg ctcgacgctc ccctggcgat
     1081 catcgagaag cgccgggtcg gcaacctcga ccgggccgag ctgatgaacg tcatcggcga
     1141 cgtcaagggc aagcgcgcga tcatcgtcga cgacgagatc gacaccgccg ggacgctcgt
     1201 cgagatcgtc cgcgcgctcg agcgcgaggg tgtcacagag atctacgcgt gtgccacgca
     1261 cggcgtgttg agcgacccgg ccgtcgaccg gatccgggac tccagcctgc gcgagatcgt
     1321 cctgaccgac tccgtcccgc tgcccgagcg caagcggctc ccgaagatca ccacgttgtc
     1381 cgtcgcgccg ctgatcggcg aggcgatcaa gcggatccat cgtggcgaat cggtcggcgc
     1441 gctcttctcg agcgaggtct cgctgaccca ggagatgctg ctctgggagg acggctccga
     1501 aggcaggctc gatacgagag aggacggtgg ctccgacgat ccggagcctc caacagccgc
     1561 catggccgca tcggcttccg cacaggtacg agactgatga ccctccagct ccaccgcccc
     1621 gacggcgagg gcggactcga accgcgaccc gtctccgacc agaactggcg caaccagctg
     1681 cgctcgccgc gctgggggag aagcctgccc gggtcgcgcc tgccggacct ccgcaacacg
     1741 gagatgaacc ccacgtcgcg gctccgctcg gtgctgttct gggcgggtct cggcctcctg
     1801 acgttcgtg
//
LOCUS       DATDDI010000325         2068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_110981, whole genome shotgun sequence.
ACCESSION   DATDDI010000325 DATDDI010000000
VERSION     DATDDI010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110981"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..983)
                     /locus_tag="VIU37_04665"
     CDS             complement(144..983)
                     /locus_tag="VIU37_04665"
                     /inference="COORDINATES: protein motif:HMM:NF014420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     component T"
                     /protein_id="HEY6013270.1"
                     /translation="MDSATTDGVGRLSADDAAFLARLAPSAPSAYHRLNPLTKAVAAT
                     VESLGAFVVGGYLGPLAIIALAVLPAAVIAGVAGRLVRISALLTLPIAISVVLVSVFT
                     RAGTTVLFTIGPFDATAEGVDFAGQTLVRLFAISTSIGLFGLTTEPRSFVLDLERRRL
                     SPRFAFVALATLEAVPAMVERSSVIASAQRARGLDTEGSIRARLRGILPLVGPVILSS
                     LTEVEERSLALEVRAFGRPGRRQLLWRLPDSARQLLARALMLGALLAAIALRLAGAFP
                     RLP"
     gene            complement(987..>2068)
                     /locus_tag="VIU37_04670"
     CDS             complement(987..>2068)
                     /locus_tag="VIU37_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013271.1"
                     /translation="MAQSWVRSIIGLVAFFLVLIVGISVTGSIDFTPDPNTGLIAAGN
                     TLVSVLVIAMLVGLVVYAATEYAQTRRLDSITSQFDTRTIVLIPIAIAINIILGQTVA
                     AVLKVPIYLDSIGTILVVVLAGPIAGALTGALANLIWTYVLPAPFHSDYAAPFFIVAV
                     EIGLVAGIFGRLGFFRSRPNTSTGLLALGGAVVVVIVAAIGYYGFVPFYSGGDVTFFA
                     PQAEGAASPDILFVILGWVVAALLVGAVVGLLALLFVRRDLGAAYVFVAGLLCGILSA
                     IISAPISTVFFGGVTGSGTDLLVATFQKAGSDLGTAVLQQGLLSDPIDKTLTFFVVFA
                     ILGALSRRFVARFPQGERAVGLTEG"
BASE COUNT          372 a          704 c          760 g          232 t
ORIGIN      
        1 ccaggcagag cgtggacttg ccggcctcgt tgggcccgac cagcccgacg atctcgccgt
       61 cgtggaggcg caggtcgacg tcgtggagca cgggcctggc gtagccggcg tagcggtagg
      121 tggccccggt cagctcgagc atgtcagggc agcctcggga aggcgccggc gagacgcagc
      181 gcgatggccg cgagcagggc gccgagcatc agcgccctgg ccagcagctg gcgagcgctg
      241 tccggcagcc gccacagcag ctgtcgccgc cccggccggc cgaacgcccg gacctcgagg
      301 gcgaggctgc gctcctcgac ctcggtcagc gacgacagga tcaccggacc gacgagcggc
      361 aggatcccgc gaagccgggc gcggatgctg ccctcggtgt cgaggccgcg cgcccgctgc
      421 gcgctggcga tcacgctgga gcgttcgacc atggccggca cggcctcgag cgtcgccagg
      481 gccacgaacg cgaagcgtgg cgacaaccgc cgtcgctcga ggtcgaggac gaagctgcgc
      541 ggctcggtgg tcagcccgaa cagcccgatc gaggtggaga tcgcgaagag ccgcacgagc
      601 gtctggccgg cgaagtcgac gccctcggcc gtggcgtcga acgggccgat cgtgaacagc
      661 accgtcgtcc cggcgcgcgt gaacacgctg accagcacga ccgagatcgc gatcggcagc
      721 gtcagcagcg ccgagatccg gacgagccgg ccggccaccc cggcgatcac cgccgccggc
      781 aggaccgcca gcgcgatgat cgccagtgga cccaggtagc cgccgacgac gaacgccccc
      841 agcgactcga cggtcgcggc gaccgccttg gtgagcgggt tcagccggtg gtaggcgctc
      901 ggggccgagg gcgccagccg ggcgaggaag gcggcgtcgt ccgccgacag gcgaccgacg
      961 ccgtccgttg tcgcggagtc gatgggctat ccctccgtca gcccgacggc ccgttcgccc
     1021 tgcgggaagc gcgccacgaa ccgccggctc agcgcgccaa ggatcgcgaa cacgacgaag
     1081 aaggtcaggg tcttgtcgat gggatcggac agcaggccct gctggagcac cgccgtcccg
     1141 aggtccgagc ccgccttctg gaacgtcgcg acgagcaggt ccgtgccgga gccggtcacg
     1201 ccgccgaaga agacggtcga gatgggagcg gaaatgatcg ccgacaggat cccgcacagc
     1261 aggcccgcga cgaagacgta ggccgcgccg aggtcccggc gcacgaacag cagcgccagc
     1321 agcccgacga ccgcaccgac gagcagggcc gcgacgaccc agccgaggat cacgaacagg
     1381 atgtccggcg aggcagcgcc ttcggcctgc ggcgcgaaga aggtgacgtc cccgccgctg
     1441 tagaacggca cgaagccgta gtacccgatc gccgcgacga tcaccacgac gaccgcgccg
     1501 ccgagggcca ggaggcccgt cgaggtgttc ggccgactgc ggaagaagcc gagacggccg
     1561 aagatgccgg cgaccagccc gatctcgacc gcgacgatga agaacggcgc cgcgtagtcg
     1621 gaatggaacg gtgccggcag gacataggtc cagattaggt tggccaacgc cccggtcagt
     1681 gcgcccgcga tggggccggc gagcacgacg accaggatcg tcccgatcga gtcgagatag
     1741 atcggcacct tgagcacggc cgccacggtc tggccgagga tgatgttgat cgcgatggcg
     1801 atcgggatga ggacgatcgt tcgcgtgtcg aactggctcg tgatcgagtc gagccgcctg
     1861 gtctgcgcgt actccgtggc cgcgtagacg acgaggccga ccagcatcgc gatgaccagg
     1921 acgctgacca gcgtgttgcc ggcggcgatc aggcccgtgt tcgggtcggg cgtgaagtcg
     1981 atcgaacccg tcacgctgat cccgacgatg agcacgagga agaacgcgac gagcccgatg
     2041 atcgagcgga cccagctttg cgccatgg
//
LOCUS       DATDDI010000326         2662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_110999, whole genome shotgun sequence.
ACCESSION   DATDDI010000326 DATDDI010000000
VERSION     DATDDI010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110999"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..774)
                     /locus_tag="VIU37_04675"
     CDS             complement(<1..774)
                     /locus_tag="VIU37_04675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013272.1"
                     /translation="MADTSPARGRWAFRPVPPEPRSIVELIRGGTLDSELAAMTWLLL
                     EGGVPLLVAGEDQGTGKSTLLGALLDFVPPEIRVVELAGAAETFDWLPQASELGWPGG
                     PRPGRAGHEVPRSGSARVVVKPDTTLLLAAELSDHLPAYTWDGAARIAVRAASIGYGL
                     AATMHADSLDAVFSDLRRSPVGLTDDELSHLGVVLVLRRPDGGRRRVVAAHYVRPVSR
                     DVHGHVQRLGPAVLATWDPAADRLEHFGWGVIPELAARVR"
     gene            complement(861..1679)
                     /locus_tag="VIU37_04680"
     CDS             complement(861..1679)
                     /locus_tag="VIU37_04680"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEY6013273.1"
                     /translation="MDVAAARSAFDYPPIEGAFKVLSSKDQAGATVRDVTYASVGGRT
                     VSAWLVEPAGKGPFAAALFLHWYATNEPDGNRTEFLDEAVALAATGVVSLLPQEVFPW
                     AVPPAGASADRQAVIDQVVDLRAGLDLLLARPEVDPNRVAVVGHDFGGMYAALVAGLD
                     PRVDVAVVMAGVPHFADWYLRYWHPVPRADEPAYRATMLDVDPVTFLPDAPGALLFQF
                     ASSDQYVSTGAIDTWNAAAPEGAQTKTYDWNHSLRTEAARRDRDDFLATELGAD"
     gene            complement(1883..>2662)
                     /locus_tag="VIU37_04685"
     CDS             complement(1883..>2662)
                     /locus_tag="VIU37_04685"
                     /inference="COORDINATES: protein motif:HMM:TIGR02276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013274.1"
                     /translation="VNAIDPATNAVVRTFAVPEGPCGVAVGFGSVWVSGGSRTVARLD
                     PVSGEQLAAIAIPGEIYDVQVGPDAVWASDRSSGSLVRIDPATNVVSATYDIGASADG
                     FRIAADAIWVASDRDAAVIRVDPTDGSVVATIPVGIKPNWVAIADASIWVENTGDGTV
                     SRIDPATNAVTGTFKVGRGPVYLAVAGGRLWVANGLARSVSVLDASSGEPVADIGFET
                     GVHGLAAAAGSIWVLDLHGPSFLGNLKGTTVWRLDPHGLDR"
BASE COUNT          397 a          959 c          972 g          334 t
ORIGIN      
        1 gcggacgcgg gccgcgagct ccggaatcac gccccagccg aagtgctcga gccgatcggc
       61 cgccgggtcc caggtcgcca ggacggccgg gccgagacgc tgcacgtggc cgtgcacgtc
      121 ccgcgacacc ggcctgacgt agtgggcggc gaccacgcgc cggcggcctc cgtcggggcg
      181 gcgcaggacc agcacgacgc cgagatgcga cagctcgtcg tcggtcaggc ccacgggcga
      241 ccggcgcagg tcgctgaaga cggcgtcgag ggagtcggcg tgcatcgtgg cggccaggcc
      301 gtagccgatc gaggctgcgc gaaccgcgat ccgggctgcg ccgtcccagg tgtacgcggg
      361 caggtgatcg gacagctcgg ccgcgagcag cagcgtcgtg tccggcttga ccacgacacg
      421 cgccgagccc gatcgcggaa cctcgtgtcc cgccctcccc gggcgtgggc cacccggcca
      481 gccgagctcc gaggcttgcg gcagccagtc gaacgtctcg gccgcaccgg ccagctccac
      541 gacccggatc tccggcggca cgaagtcgag cagcgcgccg aggagggtcg acttgcccgt
      601 cccctggtcc tcgccggcca cgagcagcgg cacgccaccc tcgagaagga gccaggtcat
      661 cgccgccagc tcggaatcga gcgtgccgcc acggatcagc tcgacgatgg agcgcggttc
      721 cggtggaacg gggcgaaagg cccaccggcc ccgcgcgggg gaggtgtcgg ccacggtgac
      781 tccagcggag cgggaatgga tgggtcggaa cgggagcgta cggccggggt cccggagcgt
      841 caaacgctgg caacctggtt ctagtcggca ccgagctcgg tggcgaggaa gtcgtcccgg
      901 tcgcggcgag ccgcctcggt ccggaggctg tggttccagt cgtaggtctt ggtttgcgcg
      961 ccctccggcg cggccgcgtt ccaggtgtcg atcgcacccg tcgagacgta ctggtccgag
     1021 ctggcgaact ggaagaggag cgccccggga gcgtccggca ggaaggtcac cggatcgacg
     1081 tcgagcatcg tcgcccggta ggcgggctcg tcggcacggg gcacgggatg ccagtagcgc
     1141 aggtaccagt ccgcgaagtg gggcacaccg gccatgacca ccgcgacgtc gactcgcgga
     1201 tcgagcccgg cgaccagggc agcgtacatc ccgccgaagt cgtggccgac gacggccacg
     1261 cggttcgggt ccacctcggg ccgggccagg aggaggtcga ggccggctct caggtcgacg
     1321 acctggtcga tcaccgcctg ccggtcggcg gaggcgccgg ccggcgggac ggcccacggg
     1381 aagacctcct gcggcagcaa cgagacgaca ccggtcgcgg ccagggcgac agcttcgtcg
     1441 aggaactccg tccggttgcc gtcgggctcg ttcgtcgcgt accagtgcag gaacagtgcc
     1501 gccgcgaacg gtcccttccc ggccggttcg accagccagg cggagacggt ccgtccgccg
     1561 acggacgcat aggtcacgtc gcggacggtg gcgcctgcct ggtccttcga gctcagcacc
     1621 ttgaatgccc cttcgatcgg tgggtagtcg aacgctgatc gcgccgccgc gacgtccacc
     1681 gatgggaccg ggctcgccgt cgcggctgac gtgggcgatg ccgtcgccga tggcaccgcc
     1741 gagcgcgccg tgctcgtgtc gacgggagcc acggccgacg ccgatccgga gcgggtggca
     1801 gtcggagcgc agccgaccac gaccagcgcg gcgagcacga ccaagactcc gggccacggc
     1861 acgacgccgc gccgactgcc gctcatcggt cgagaccgtg cgggtccagg cgccagacgg
     1921 tggtgccctt caggttgccc aggaagctcg gaccgtggag atcgaggacc cagatcgagc
     1981 cggcggcggc cgccagcccg tggacgccgg tctcgaaccc gatgtcggcg accggctcgc
     2041 cgctgctcgc gtcgaggacg ctcacggacc tggcgaggcc gttggccacc cagagccgcc
     2101 cgccggcgac cgcgaggtag accggcccgc gacccacctt gaacgtgccc gtgaccgcgt
     2161 tggtcgccgg atcgatccgg ctcacggtgc cgtcgccggt gttctcgacc cagatcgatg
     2221 cgtcggcgat ggccacccag ttgggcttga tcccgaccgg gatcgtcgcc accaccgagc
     2281 cgtccgttgg gtccacccgg atcacggcgg catcgcgatc gctcgccacc cagatggcgt
     2341 cggcggcgat cctgaacccg tcggcgctcg ctccgatgtc gtacgtcgcg ctgacgacgt
     2401 tcgtggcggg atcgatccgg acgagcgagc cacttgaccg gtccgacgcc cagacggcgt
     2461 ccggcccgac ctggacgtcg tagatctcgc cgggaatggc gatcgccgcc agctgttcac
     2521 cgctcaccgg atcgagccgg gccacggtcc ggctcccgcc gctgacccag accgagccga
     2581 acccgaccgc cacgccgcag ggcccctcgg gcaccgcgaa cgtccgaacc acggcgttcg
     2641 tcgcgggatc gatcgcgttg ac
//
LOCUS       DATDDI010000327         2643 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_464882, whole genome shotgun sequence.
ACCESSION   DATDDI010000327 DATDDI010000000
VERSION     DATDDI010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464882"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..736)
                     /locus_tag="VIU37_04690"
     CDS             complement(<1..736)
                     /locus_tag="VIU37_04690"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY6013275.1"
                     /translation="MIPIARPDLGQEEIDAVTEVLSSGMIAQGRKVAELEGLWAEFIG
                     VKHAIAMSNGTAALMSIFAGIDLEPGDEVITVAHTFAATANAILYTGATPVFVDIEPD
                     TYLIDAKRIEAAITPRTKAICPVHLFGLTADMDMIQAIADRYGLAVVEDACQAHGATF
                     RGRRAGSFGHGAWSLYATKNMTTAEGGFVTTDDDKLADWLRRYRNQGMRTRYQFEMLG
                     FNFRLTDLAAAIGLVQLAKLDRNTERR"
     gene            complement(733..1410)
                     /locus_tag="VIU37_04695"
     CDS             complement(733..1410)
                     /locus_tag="VIU37_04695"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY6013276.1"
                     /translation="MIDPSARVHASADLEADVSVGPGTSIWHRAQIRTGARIGRDCVI
                     GRDVFVDEGVPLGDRVKVQNGALIYHGVTVEDSVFIGPGAILTNDRHPRAITATGSLA
                     RDADWTVSPIAIKHGASIGAGAVVVAGCDVGRYAMVGAGAVVTHEVPDHAVVAGNPAR
                     GIGWACACGQRLIDSTGHPAPATRERYARDPELSCPVCGRRYAFTLEEGILHERQGPA
                     VAQGARP"
     gene            complement(1508..2164)
                     /locus_tag="VIU37_04700"
     CDS             complement(1508..2164)
                     /locus_tag="VIU37_04700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013277.1"
                     /translation="MTDPTAADPTPTRPTKITRARATTSDVPKRAPRAKPPAPADAAA
                     ADAAAADAAPAALRQSPVRADRIEIREGGADHVEADRVSVTQGGITSVDADKVDVRLG
                     GIVYAHGDEISVNLGGVTLARAEHLTVERGGIGAAFAREASLTQAYARSVLAQDVRVD
                     QGLIGTVVTGHATFDRPSGVLMLIAGRVDGPVNALLDWRGALVFGAAFGVVWGLIRRR
                     "
     gene            2340..>2643
                     /locus_tag="VIU37_04705"
     CDS             2340..>2643
                     /locus_tag="VIU37_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013278.1"
                     /translation="MRRPVLAGAGILVVAGVVAIGALLAGGFPGSDGPGPSEPAAARS
                     GDPEGLVTASPSTAPSPTPTPTPSPSPTPVLVPAPLTGRLVTPDIAARRPIAVMIDD"
BASE COUNT          353 a          941 c          962 g          387 t
ORIGIN      
        1 gccgccgttc cgtgttccgg tcgagcttcg cgagctggac gagcccgatc gccgccgcga
       61 ggtcggtcag ccggaagttg aacccgagca tctcgaactg gtagcgcgtc cgcatgccct
      121 ggttccggta gcggcgcagc cagtcggcga gcttgtcgtc gtcggtggtg acgaagccgc
      181 cctcggcggt cgtcatgttc ttggtcgcgt acaggctcca ggcgccgtgg ccgaagctgc
      241 cggcccgccg cccgcggaac gtcgcgccgt gcgcctggca ggcatcctcc acgacggcca
      301 gcccgtagcg gtcggcgatg gcctggatca tgtccatgtc ggcggtcagg ccgaacaggt
      361 ggaccgggca gatcgccttg gtccgcggcg tgatcgccgc ctcgatccgc ttggcgtcga
      421 tcaggtacgt gtcgggctcg atgtcgacga agaccggcgt ggcaccggtg tacaggatcg
      481 cgttggccgt ggccgcgaac gtgtgggcga cggtgatgac ctcgtcgccc ggctccaggt
      541 cgatgcccgc gaagatcgac atcagcgccg cggtgccgtt ggacatcgcg atcgcgtgct
      601 tcacgccgat gaactcggcc cacaggccct cgagctcggc gaccttgcgg ccctgcgcga
      661 tcatgccgct gctcaggacc tcggtgacgg cgtcgatctc ttcctggccg agatccgggc
      721 gggcaatggg gatcatgggc gcgctccttg tgcgacagcg ggaccctgtc gctcgtgcag
      781 gattccttct tcgagcgtga acgcgtagcg acgtccacac acgggacaac tcaattcagg
      841 gtcgcgggcg tagcgctcgc gcgtggcggg ggccggatgg ccggtcgaat cgatcaggcg
      901 ctggccacac gcgcacgccc agccgatgcc ccgcgcgggg tttccggcga cgaccgcgtg
      961 atcggggacc tcgtgggtga ccacggcgcc ggcgccgacc atcgcgtaac ggcccacgtc
     1021 gcaaccggcc acgacgaccg cgccggcgcc gatcgaggcg ccgtgcttga tggcgatagg
     1081 gctgacggtc cagtccgcgt cgcgggcgag gctgccggtg gccgtgatcg cgcgcggatg
     1141 gcgatcgttg gtcaggatgg cgcctgggcc gatgaacacg gagtcctcga ccgtgacgcc
     1201 gtggtagatc agcgcgccgt tctggacctt gacgcggtcg ccgagcggga cgccctcgtc
     1261 gacgaacacg tcccggccga tcacgcaatc gcgcccgatc cgggcgccgg tcctgatctg
     1321 ggcacggtgc cagatgctgg tcccgggccc cacggacacg tccgcttcga ggtccgcgct
     1381 ggcatggacg cgcgcggaag ggtcgatcac gggtggcatc tcctggacga tgcgggcggg
     1441 gggacgagcc gaccgagtat atcgtcccgc tgcccgaacc gccccgggag ccggccgagg
     1501 gagccggtca gcgacgccgg atcagacccc agacgacgcc gaacgcggcc ccgaacacga
     1561 gcgccccacg ccagtcgagc agcgcgttca ccggtccgtc cacccgcccg gcgatgagca
     1621 tcagcacacc gctgggccgg tcgaacgtgg catgcccggt caccacggtc ccgatcaggc
     1681 cctggtcgac gcggacgtcc tgtgccagga ccgagcgggc gtaggcctgg gtgaggctgg
     1741 cctcgcgggc gaacgcggcg ccgataccgc cgcgctcgac cgtcaggtgc tcggcgcggg
     1801 cgagcgtcac gccgccgaga ttcaccgaga tctcgtcccc atgggcgtag acgatgccgc
     1861 ccagccggac atcgaccttg tcggcgtcga ccgaggtgat cccaccctgg gtgacggaga
     1921 cgcggtcagc ctccacgtgg tcggcgccgc cctcccggat ctcgattcga tccgcgcgaa
     1981 ccggcgactg ccggagtgcc gccggggccg catcggccgc agccgcatcg gccgcagccg
     2041 catcggccgg ggccggtggc ttcgcgcggg gtgcccgctt cgggacgtcc gatgtcgtgg
     2101 cgcgcgcccg ggtgatcttg gttggccggg ttggagtcgg atcggcggca gtcggatcgg
     2161 tcatcggacc ttcctcgatc gggcggtcgc gcgagcggat ggagggctcg ggccgcgtgt
     2221 ctggacccag actacgctct cagacttgcc tcgtcctgta tcctccgccc ggcaccgcgg
     2281 cgtctcccgt gggccgatcg gtccggctcg atggagggga cgcagcgagt gttcgaacga
     2341 tgaggcgacc ggtcctggcc ggggcgggca tcctggtggt ggccggcgtc gtcgcgatcg
     2401 gggcgctcct tgccggcggg ttcccggggt cggacggccc cgggcccagc gaaccggccg
     2461 cggcccgctc cggcgatccg gaaggcctgg tcacggcgag cccgtccacc gctccgagcc
     2521 cgacgccaac acccacgccg agccccagcc cgacgccggt cctcgtcccg gcgccgctca
     2581 ccggccggct cgtgaccccg gacatcgccg cccggcgccc gatcgcggtc atgatcgacg
     2641 acc
//
LOCUS       DATDDI010000328         1603 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_298428, whole genome shotgun sequence.
ACCESSION   DATDDI010000328 DATDDI010000000
VERSION     DATDDI010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298428"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..1059)
                     /locus_tag="VIU37_04710"
     CDS             complement(142..1059)
                     /locus_tag="VIU37_04710"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY6013279.1"
                     /translation="MPDRDQRPAGTRSIEAIQDDFRSRNYIADRSVATAVFLALELER
                     PLLLEGEAGVGKTELAKVLAASLDTRLIRLQCYEGLDVNTAVYEWNYPRQMLEIRLLE
                     ARGEAERATAHDIFGPDFLIRRPLLQALEASDGAAPVLLIDEIDRADEEFEAYLLEIL
                     SDFQVTVPEIGTIRAERPPRVILTSNRTREVHDALKRRCLYHWIDYPTAQKEYEIVLA
                     KVPESPERLAREVVAFVHRLRQADLTKVPGIAETLDWAAALLSLGARELAPELVDETL
                     GVVLKYEEDIRHVRGATAEHMLAQASATI"
     gene            complement(1089..1376)
                     /locus_tag="VIU37_04715"
     CDS             complement(1089..1376)
                     /locus_tag="VIU37_04715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013280.1"
                     /translation="MAIATLGGRIVRRGVPAHPGSMLWLARVGRTAILGLPTCGAYSK
                     ATAADLLLPRLLSGEPASERTVAKLGHGGILTRSQRFRFPPYARELDAPDG"
BASE COUNT          224 a          563 c          596 g          220 t
ORIGIN      
        1 ccgtcgtcac gccgtcggcc ttcagcgccc gggcgaaccc gaccgcccgc gcgagcatga
       61 gcgggccgtc gacctcgatg accggcgggt cggccgcgcg ttgcccgtcc acgctctcgc
      121 ccatcgccgg acggaggccg atcagatcgt cgccgacgcc tgcgcgagca tgtgctcggc
      181 cgtggcgccg cggacgtggc ggatgtcctc ctcgtacttg aggaccacgc cgagcgtctc
      241 gtcgacgagc tcgggcgcga gctcacgggc gccgagggac aggagcgcgg ccgcccagtc
      301 gagcgtctcg gcgatcccgg ggaccttggt caggtcggcc tggcgaaggc gatggacgaa
      361 ggccacgacc tcgcgggcca ggcgctcggg ggactccggc accttcgcca ggacgatctc
      421 gtactccttc tgggcggtcg gatagtcgat ccagtggtac aggcagcgac gcttcagcgc
      481 gtcgtggacc tcgcgggtcc ggttcgaggt caggatcacg cgcggcgggc gttcggcccg
      541 gatcgtgccg atctcgggga ccgtcacctg gaagtccgac aggatctcca ggaggtacgc
      601 ctcgaactcc tcgtcggcgc ggtcgatctc gtcgatcagg aggaccggcg cggcgccgtc
      661 cgacgcctcg agcgcctgga ggagcggccg ccggatcagg aagtccggcc cgaagatgtc
      721 gtgggcggtg gcccgctcgg cctcgccccg cgcctcgagc agacggatct cgagcatctg
      781 gcgcgggtag ttccactcgt agaccgcggt gttgacgtcc aggccctcgt agcactggag
      841 ccggatgagc cgggtgtcga gcgacgcggc gagcaccttg gccagctcgg tcttgccgac
      901 gccggcctcg ccctcgagga gcagcgggcg ctccagctcc agggccagga agacggccgt
      961 cgcgaccgac cggtccgcga tgtagttgcg gctccggaag tcgtcctgga tcgcctcgat
     1021 ggaacgggtg ccggcggggc gctggtctcg gtcaggcatc gtgggcgcga tcctacacgg
     1081 cgatggcgtc agccatccgg cgcgtccagc tcgcgggcgt agggcgggaa ccgaaaccgc
     1141 tggctgcggg tcaggatccc gccgtgacca agcttcgcga cggtccgttc cgaagccggc
     1201 tcgcccgaca gcagccgcgg cagcagcagg tccgcggcgg tcgccttcga gtaggcgccg
     1261 caggtcggca ggcccaggat cgcggtccgc ccgacgcgag ccagccagag catcgatccc
     1321 gggtgggccg gcacgccacg ccggacgatc cgcccgccga gggtcgcgat ggccacgaag
     1381 cacgtgctgg tcgaccgatt cgacccggcg acgtaccgga tcctggtggg cgcgatccta
     1441 cacggcgagc gcgtcagcca tccggcgcgt ccagctcgcg tgcgtagggc gggaaccgga
     1501 accgctggct gcgggtcagg atcccaccgt ggccgagctt cgcgacggtc cgttccgagg
     1561 cgggctcgcc cgacagcagc cgtggcagca gcaggtccgc ggc
//
LOCUS       DATDDI010000329         1983 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_28048, whole genome shotgun sequence.
ACCESSION   DATDDI010000329 DATDDI010000000
VERSION     DATDDI010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28048"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VIU37_04720"
     CDS             <1..612
                     /locus_tag="VIU37_04720"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY6013281.1"
                     /translation="DQVMVPVGVVQQYFVGGKSVRSIGVSVAKADEMTAASTAITSLL
                     TERHGLSATDTADFNVFNQTQLLDAASSISGTLTLLLGGIASISLVVGGIGIMNIMLV
                     SVRERTREIGIRKAIGARGRDILAQFLVEALTLSLLGGLIGIVVGLGASAVIGQLAGW
                     GFHFNPATVVAAVLFSLAVGVVFGVWPARQAARLDPITALRYE"
     gene            626..1237
                     /locus_tag="VIU37_04725"
     CDS             626..1237
                     /locus_tag="VIU37_04725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013282.1"
                     /translation="MSFDPNQPAGPEPGPAPHESASFSPQPVVPSAPAVQVSKRASSG
                     GWLNVILIVAAVVAVGGVAFAVGRNTAPAATPARGNGLFGNGTFPRGSFEPGASGAPG
                     AGLFGGGLRGEAGFNLSGTVQSVTGDTLTITTANGQTLEFTLGADTTYSTKAPAAAAD
                     VKPGSKVEVQLQLGADGFRPNANASAAPSAGPVGTAGSVTVVP"
     gene            1259..1930
                     /locus_tag="VIU37_04730"
     CDS             1259..1930
                     /locus_tag="VIU37_04730"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013283.1"
                     /translation="MHLLVVEDDPRLVRLLRRLLEEDRHVVETATTGQDGLEIAEAAP
                     GIEVVILDIGLPDISGLEVARRIRAAGSEVAILMLTARDTIGDRVTGLDAGADDYLVK
                     PFAYEELAARLRALGRRGARVRPEPKLVAGPIVLDETSRRVTLDGRSIDLSPREFSLL
                     ECLLRHPGQTLSRDQLLDQAWPFSVAVTPNAVDAYVHYLREKLGAAGRLIETVRGVGY
                     RLAEG"
BASE COUNT          276 a          729 c          703 g          275 t
ORIGIN      
        1 gaccaggtca tggtgccggt cggcgtcgtc cagcagtact tcgttggcgg caagagcgtg
       61 cggagcatcg gcgtcagcgt ggcgaaggcc gacgagatga cggccgcgag cacggcgatc
      121 acctcgctgc tcaccgagcg ccacggcctg agcgcgaccg acacggccga cttcaacgtc
      181 ttcaaccaga cccagctgct cgacgcggcc agctcgatca gcgggacctt gaccctcctg
      241 ctcggaggga tcgcctcgat ctcgctggtc gtcggcggca tcgggatcat gaacatcatg
      301 ctggtctcgg tccgcgagcg gacacgcgag atcgggatcc gcaaggcgat cggcgcgcga
      361 ggccgcgaca tcctcgccca gttcctggtg gaggcgctga cgctgtcgct cctcggcggg
      421 ctgatcggga tcgtcgtcgg cctcggcgcc tccgccgtca tcggccagct cgccggctgg
      481 ggcttccact tcaatccggc cacggtcgtg gccgccgtcc tgttcagcct cgcggtcgga
      541 gtggtgttcg gcgtctggcc ggcgcgccag gccgcccgcc tcgacccgat cacggccctg
      601 cgctacgaat gagaaggaga ctcgcgtgag cttcgatccc aaccagccgg ccggccccga
      661 gccgggaccc gctccccatg agagcgcctc gttcagcccg caaccggtcg tgccgagtgc
      721 gcccgcggtg caggtctcga agcgcgcgtc gtccggcggg tggctgaacg tcatcctgat
      781 cgtggcggcg gtggtcgccg tgggcggcgt cgcgttcgcc gtcggccgca acaccgcccc
      841 ggccgcgacg ccggcgcgcg gcaacggact gttcggcaac ggcaccttcc cgcgtggcag
      901 cttcgagccg ggggcatcgg gcgcgccggg cgccgggctg ttcggtggcg ggctccgcgg
      961 cgaggccggc ttcaacctct ccggcacggt ccagtccgtc accggcgaca ccctgacgat
     1021 cacgacggcc aacggccaga cgctcgagtt cacgctcggc gccgacacga cgtacagcac
     1081 caaggccccg gcggcggcgg ccgacgtcaa gccgggatcc aaggtggagg tccagctgca
     1141 gctcggcgcc gacgggttcc gtccgaacgc gaatgccagc gccgcgccgt cggcaggccc
     1201 ggtgggcacg gccggcagcg tcacggtcgt cccgtagcga aggcgtaggc tgacggccat
     1261 gcacctgctc gtcgtcgaag acgacccgcg actcgtccgg ctgctgcgcc ggctgctcga
     1321 ggaggaccgc cacgtcgtgg agaccgccac gaccgggcag gacggcctcg agatcgccga
     1381 agcggcgccc ggcatcgagg tcgtcatcct cgacatcggc ctgcccgaca tctccgggct
     1441 ggaggtcgcg cggcggatcc gggcggccgg gtccgaggtc gccatcctga tgctgacggc
     1501 ccgggacacg atcggcgacc gggtgaccgg gctggacgcg ggcgccgacg actacctggt
     1561 caagccgttc gcgtatgaag agctcgcggc gaggctccgc gcgctcgggc gacgcggggc
     1621 gagggtccgg ccggagccca agctcgtcgc cgggccgatc gtccttgacg agacgtcgcg
     1681 ccgggtgacc ctcgacggtc gctcgatcga cctgagtccg cgcgagttct cgctgctcga
     1741 gtgcctgctc cgccacccgg gtcagacgct gtcacgcgac cagctcctcg accaggcctg
     1801 gccgttcagc gtcgccgtca cgcccaacgc cgtcgacgcc tacgtccact acctgcgcga
     1861 gaagctcggt gccgccgggc ggctcatcga aaccgtccgc ggcgtgggct accgcctggc
     1921 ggaaggctga catgcccgac gggatcgcga ccccacccga gacgaccgct ccggagctcg
     1981 ccg
//
LOCUS       DATDDI010000330         1711 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_402665, whole genome shotgun sequence.
ACCESSION   DATDDI010000330 DATDDI010000000
VERSION     DATDDI010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402665"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VIU37_04735"
     CDS             <1..338
                     /locus_tag="VIU37_04735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013284.1"
                     /translation="APRAGGDQLVQIADQLARMSSTPSVPFERVLASLPARLAPGTLV
                     LTISSQDPLRFAPALRRLRASGYEHRHVSLGPAAVAHATRARLAGLDAVAGALDPDWR
                     TSASLNLAG"
     gene            313..1650
                     /locus_tag="VIU37_04740"
     CDS             313..1650
                     /locus_tag="VIU37_04740"
                     /inference="COORDINATES: protein motif:HMM:NF024948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4129 domain-containing protein"
                     /protein_id="HEY6013285.1"
                     /translation="MQASTSPADLGRWLLGLLPASATAIAEGAWIAVVYGALQFGLSR
                     GSGTVGLWAFVAVAAVAMFVVRVAPSGAAHYLAVATLVLGAAVAGWLSDPAVRTVVAD
                     GQLGGLITAGWGWLLGLAAWRGTRHRDPSTEDAVVAPLLTWIVPGLAVPWLIGSGSSE
                     RQAFVDAALPTTLLFVTAGLIAVGLARLETLGQLVGVDWRRNRAWVSMLVGVVGLVAL
                     IAVPTAWLLNASAEASTRTLLGPAVAVADAVAGMAAPVQDAIGGLLPGGSAGQPAYPP
                     GGVPTSSLATWIDAFVLTGVLMVMVGVLLVFRRIMTSRPRPEQPPPEIEERYPIPPPP
                     LPGGLGWIRLPRLGRRREIVPRTASEAYLVVLDRLEPDERLRRTPSESPAAHARRLRD
                     MGAGTLSLDLLAADFELERYRGATLTPSEIRRAIERARAGARLGRASLKGAQG"
BASE COUNT          177 a          633 c          640 g          261 t
ORIGIN      
        1 tggcgccccg ggcgggcgga gaccagctcg tccagatcgc ggaccagctc gcccggatga
       61 gctccacgcc ttcggtgccg ttcgagcgtg tcctggcctc cctccccgcc cggctggcgc
      121 ctggaacgct cgtcctcacc atcagcagcc aggacccgct ccggttcgca ccggccctcc
      181 gccggctgcg agcgagcggg tacgagcacc ggcacgtcag cctcggaccg gcagccgtgg
      241 cccatgccac gagagcgcgg ctggcaggtc tcgatgccgt cgccggtgcc ctcgacccgg
      301 attggcgaac gagtgcaagc ctcaacctcg ccggctgacc tcggtcgctg gctgctcggc
      361 ctgctgcccg cgtcggcgac ggcgatcgcg gagggcgcct ggatcgcggt cgtctacggg
      421 gcgctgcagt tcggcctgtc gcgaggcagc gggaccgttg gcctgtgggc cttcgtcgcc
      481 gtcgcggccg tcgcgatgtt cgtcgtccgg gtcgcgccct ccggagcggc ccactacctc
      541 gccgtcgcga ccctggtcct cggggccgcc gtcgccggtt ggctgtcgga cccggccgtc
      601 cggacggtcg tggcggacgg gcagctgggc ggcctgatca cggccggctg gggatggctg
      661 ctcggcctgg ccgcgtggcg cggcactcgt catcgcgacc cgtcgaccga ggacgcggtc
      721 gtggccccgc tcctcacctg gatcgtgccc ggcctggccg tcccctggct gatcggatcc
      781 gggtcgagcg agcgccaggc attcgtcgac gccgccctcc cgacgacgct cctgttcgtg
      841 acggccggcc tgatcgccgt cgggctggcc cggctcgaga cgctcgggca gctcgtcggc
      901 gtcgactggc gacggaaccg ggcgtgggtg tccatgctcg tcggcgtggt cggcctggtg
      961 gcgttgatcg cggtccccac ggcctggctg ctcaacgcct ccgccgaggc gagcacgcgc
     1021 accctgctcg gaccggcggt cgcggtcgcg gatgcggtgg ccggcatggc cgcgccggtc
     1081 caggacgcga tcggcgggct cctgccgggc gggtcggcgg ggcagccggc gtacccaccc
     1141 ggtggcgtgc ccacgtcctc gctggcgacc tggatcgacg ccttcgtcct gaccggcgtg
     1201 ctcatggtca tggtcggcgt cctgctggtc ttccgtcgaa tcatgacgag ccggccgcga
     1261 ccggagcagc cgccgccgga gatcgaggag cgatatccga ttccgccgcc tccgctgccg
     1321 ggcggcctgg gctggatccg gctgccacgg ctcggccgcc ggcgcgagat cgtgccgcgg
     1381 accgcgagcg aggcctatct cgtggtcctc gaccgcctcg agccggatga gcgtctccgc
     1441 cggacgccgt cggaatcgcc tgcggcgcac gctcgtcgcc tgcgcgacat gggggccggg
     1501 acgctgtcgc tggacctgct cgcggcggac ttcgaactcg agcggtaccg tggcgcgacc
     1561 ttgaccccgt ccgagatccg acgcgcgatc gaacgagccc gggccggcgc gcgcctcggg
     1621 cgagccagcc tgaagggagc gcagggttga ccgtcgtcct ggtcggggtg ggagggttcg
     1681 cgggcgcgat ctcgcgctac ctcgtggatg g
//
LOCUS       DATDDI010000331         2570 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_173799, whole genome shotgun sequence.
ACCESSION   DATDDI010000331 DATDDI010000000
VERSION     DATDDI010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173799"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..1501
                     /locus_tag="VIU37_04745"
     CDS             23..1501
                     /locus_tag="VIU37_04745"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEY6013286.1"
                     /translation="MSLASRRSPAFLADPRWIALLVLCAGMLMIVLDATIVNVALPSI
                     QHDLDFSQAGLAWVVNAYLVAFGGLLLLAGRLGDLLGRKRVFLAGMTLFTLASLACGL
                     SINQEMLIASRFVQGIGGAMTSAVVLGMIVTMFTEPGERARALGAYSFVASAGASLGL
                     LLSGVLTEAINWHWIFFVNLPIGIVTAILALRVLPWDRGIGLHRGADALGAILVTASL
                     MLGVTTIVRTSEVGWDSPQTLALGGVAVALLLAFAIRETRTHNPLLPLRIFRSRVTVG
                     ANIVQAFMTAAMFSMFFLGSLYLERVAGMDPIAIGLAFLPFSVGIGVFSLGASARLVT
                     RFGARNVLVPSLVLMTGALLWLTRAPVQASYVVDVLPSMLLVGVGGGLGFPALVSLAM
                     ADATPGDAGIASGLVNTTQQVGGALGLAVLATLSSARTSVQLAIGDPPRMALTTGFHL
                     AFGIGAGLTIAAIAVTILLVRPAETDARAAARAGSPATEPLA"
     gene            complement(1498..2478)
                     /gene="deoC"
                     /locus_tag="VIU37_04750"
     CDS             complement(1498..2478)
                     /gene="deoC"
                     /locus_tag="VIU37_04750"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEY6013287.1"
                     /translation="MTATRHPESLARERAHELIRAWDARPGPLGNLLGRVTAVDEVGV
                     EQRVDALKKRSIKKASKLWALNLAVSMIDLTTLEGKDTPGKVRALCVKAMRPQPGDPT
                     IPSVAAVCVYPALVAEAKAALRGSSVKVASVATGFPSGQTFRHVKVAEVRAAVDAGAD
                     EVDMVIDRGAFLSGDYLTVFEEIVEVKEAAGEAHLKVILETGELETYDNVRRASVLAM
                     AAGADFIKTSTGKVTPAATLPVTLVMLEAIRDFERSTGRQVGMKPAGGIRVAKEAIQY
                     LVVLYETLGPRWMSPDWFRFGASSLLNDILMQIEFQRTGRYQDPDDFTLD"
BASE COUNT          327 a          928 c          875 g          440 t
ORIGIN      
        1 ccccgaagga gctcgattcc gcatgtccct cgcatcgcgc cgctcgccgg cattcctcgc
       61 cgatccacgc tggatcgccc tgctcgtcct gtgcgccgga atgctcatga tcgtgctcga
      121 cgccacgatc gtgaacgtcg ccctcccgtc aatccagcac gacctcgact tctcgcaggc
      181 cgggctcgcc tgggtcgtga acgcctatct cgtggccttt ggtgggctcc tcctgctggc
      241 cggccggctc ggcgacctcc tcggccggaa gcgggtcttc ctggccggca tgacgctgtt
      301 cacgctcgcc tcgctggcct gcggtctgtc gatcaaccag gagatgctga tcgcgtcccg
      361 cttcgtgcag ggcatcggcg gggccatgac ctcggccgtc gtcctgggca tgatcgtcac
      421 gatgttcacc gagccgggcg agcgagctcg cgcgctcggt gcctacagct tcgtcgcctc
      481 ggccggggcc tcgctcggac tgctgctcag tggcgtcctc accgaggcca tcaactggca
      541 ctggatcttc ttcgtcaacc tgccgatcgg gatcgtgacg gcgatcctgg cgctgcgcgt
      601 cctcccctgg gatcgcggca tcggcctgca tcgcggtgcg gacgcgctcg gcgcgatcct
      661 cgtcacggcc tcgctgatgc tcggcgtcac gacgatcgtc cgcacgagcg aggtcggctg
      721 ggattcgccc cagaccctcg cgctcggggg cgtggccgtc gcgctgctgc tcgccttcgc
      781 gatccgcgag acccggacgc acaacccgct cctgccactc cggatcttcc gatcccgggt
      841 cacggtcggg gccaacatcg tccaggcgtt catgaccgcc gcgatgttca gcatgttctt
      901 cctcgggtcg ctctacctgg agcgagtcgc ggggatggac ccgatcgcca tcgggctcgc
      961 gttcctgccg ttcagcgtcg gcatcggggt tttctcgctc ggcgcgtccg cccggctggt
     1021 cacgcggttc ggcgcacgga acgtgctcgt ccccagcctc gtgctgatga cgggagcgct
     1081 gctgtggctg acccgcgcgc ccgtccaggc cagctacgtc gtcgacgtcc tgccgtcgat
     1141 gctcctggtc ggggtcggcg gcgggctcgg cttcccggcg ctcgtgtcgc tggcgatggc
     1201 cgacgccacg cccggcgacg ccggcatcgc ctccggcctc gtgaacacga cgcagcaggt
     1261 cggcggcgcg ctcggactgg ccgtcctggc cacgctgtcg agcgcacgga ccagcgtcca
     1321 gctggccatc ggcgacccgc cgaggatggc gctgacgacg gggttccacc tcgccttcgg
     1381 gatcggcgcc ggactgacca tcgcggcgat cgcggtcacg atcctgctcg tgcgaccggc
     1441 tgagaccgac gcgcgtgcgg cggcccgggc gggctcgccg gcgaccgaac cgctcgccta
     1501 gtcgagcgtg aagtcgtccg ggtcctggta gcggccggtc cgctggaact cgatctgcat
     1561 caggatgtcg ttgagcagcg acgacgcccc gaagcggaac cagtcggggc tcatccagcg
     1621 cggaccgagc gtctcgtaca ggacgacgag atactggatc gcctccttgg cgacccggat
     1681 cccgccggcc ggcttcatcc cgacctggcg cccggtcgag cgctcgaagt cgcggatggc
     1741 ctcgagcatg accagggtga ccggcagggt cgccgccggg gtgaccttgc cggtcgacgt
     1801 cttgatgaag tcggcgccgg cggccatcgc caggacgctg gcccgtcgga cgttgtcgta
     1861 ggtctcgagc tcgccggtct cgaggatcac cttgaggtgc gcctcgccgg ccgcctcctt
     1921 gacctcgacg atctcctcga agaccgtcag gtagtcgccc gacaggaagg cgccgcggtc
     1981 gatgaccatg tcgacctcgt cggcaccggc gtcgaccgcc gcgcggacct cggcgacctt
     2041 gacgtgacgg aaggtctgac cggatggaaa gccggtcgcg acgctggcga ccttcacgct
     2101 cgagccgcga agggcggcct tggcctcggc caccagcgcc ggatacacgc acaccgcggc
     2161 gaccgacggg atcgtggggt caccgggctg cgggcgcatc gccttgacgc acagggcccg
     2221 gaccttgccc ggcgtgtcct ttccctcgag ggtggtcagg tcgatcatcg acacggccag
     2281 attgagcgcc cacagcttgg aggccttctt gatcgagcgc ttcttgagcg cgtcgacccg
     2341 ctgctccacg ccgacctcgt cgaccgcggt gacccgcccg agaaggttcc cgagcggccc
     2401 cgggcgcgcg tcccaggcac ggatgagctc gtgtgcgcgc tcgcgcgcga gggattcagg
     2461 atgccgagtc gcggtcatgg gacggagagg atacacctcg tccgagcgtg tttcgagcgc
     2521 ggcccgagcg tggcgcttcg ccggatcgtg cgcggtccga atccgtcgct
//
LOCUS       DATDDI010000332         1692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_506817, whole genome shotgun sequence.
ACCESSION   DATDDI010000332 DATDDI010000000
VERSION     DATDDI010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506817"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VIU37_04755"
     CDS             complement(<1..786)
                     /locus_tag="VIU37_04755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEY6013288.1"
                     /translation="MRIATWNVNSLKARQEAVERWLERAAPDILLLQETKLTDGDAPV
                     MTFAMAGYQLIHHGEGRWNGVAVAARDGLAVSDVVTNFGDGPVRDSGPGGTGAEVTSE
                     DDFNPFDEARMLAVTVDGLRVVSLYAPNGRIVGSPFYTGKLAWFERLERWIRETGATG
                     GPAVLGGDLNVAPTDKDVWDAAAVHGGTHVSEPEREAFRALLATGLVDGYRQVHDESG
                     RFSWWDYRAGMFHKNLGMRIDHLLVSAPVAARIVGAEIDRDARK"
     gene            complement(797..1474)
                     /locus_tag="VIU37_04760"
     CDS             complement(797..1474)
                     /locus_tag="VIU37_04760"
                     /inference="COORDINATES: protein motif:HMM:NF036876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5612 domain-containing protein"
                     /protein_id="HEY6013289.1"
                     /translation="MVRRRAAEAAAIRFDLVDRPEAISAVTARVNELGGRIRALATVR
                     ETDGDPPLTEIELEVEGVTQDALSNGLESLPDVRSIHRTRALDQVFGKRVIVVGGGAQ
                     VAQVALGAVSEADRHNLRGERISVDTIPLVGEAHIAAAVRAVADLPRARLLVLAGSIM
                     GGDISVAADELRAVGIPIIALNMVGSITEHVDLVVSDPVQAGTMAVMAVAETATFDLS
                     RQRGRRY"
     gene            complement(1474..>1692)
                     /locus_tag="VIU37_04765"
     CDS             complement(1474..>1692)
                     /locus_tag="VIU37_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013290.1"
                     /translation="GDRGVNITGIVGVAEDTDGALMLTTSDAAATREAFAGLGLAYEE
                     HDPAGGVEPDSMSVSDLRPGAAGRGSLG"
BASE COUNT          232 a          629 c          591 g          240 t
ORIGIN      
        1 cttgcgggcg tcccggtcga tctcggcgcc cacgatccgt gcggccaccg gcgcggaaac
       61 cagcagatgg tcgatccgca tgccgaggtt cttgtggaac atgccggcgc ggtagtccca
      121 ccacgagaac cggccgctct cgtcgtggac ctggcgatag ccgtcgacga gacctgtcgc
      181 cagcagggcg cggaacgcct cgcgctccgg ctccgacaca tgggtgccgc cgtggaccgc
      241 cgccgcgtcc cagacgtcct tgtcggtcgg ggcgacgttg aggtcgccgc cgagcacggc
      301 tggaccaccg gtcgcgccgg tctcccggat ccagcgctcg agtcgctcga accaggcgag
      361 cttgcccgtg tagaacggcg aaccgacgat ccggccgttc ggggcgtaga gactgacgac
      421 ccgcaggccg tcgacggtca cggccagcat ccgcgcctcg tcgaacgggt tgaagtcatc
      481 ctcgctggtc acctcggcgc cggtgccgcc cggacccgag tcgcggaccg gcccatcgcc
      541 gaagttggtg accacgtcgc tcaccgcgag cccgtcccgg gccgcgacgg ccaccccgtt
      601 ccagcggcct tcgccgtggt ggatcagctg gtaacccgcc atcgcgaagg tcatgaccgg
      661 cgcgtcgccg tcggtgagct tcgtctcctg gagcagcagg atgtccgggg cggcccgttc
      721 cagccagcgt tcgacggcct cctggcgggc cttgagcgag ttgacgttcc aggtcgcgat
      781 acgcacgggc gatccgctag taccggcgtc cgcgctggcg ggacaggtcg aacgtcgccg
      841 tctcggccac cgccatcacc gccatcgtgc cggcctggac cgggtccgag acgaccaggt
      901 cgacgtgctc ggtgatggaa ccgaccatgt tgagggcgat gatcgggatc cccaccgccc
      961 ggagctcgtc cgccgccacg ctgatgtcgc cgcccatgat cgatccggcg aggaccagca
     1021 gccgtgcgcg cggcaggtcc gcgacggcgc ggaccgcggc ggcgatgtgc gcctcgccga
     1081 cgagcgggat cgtgtccacg ctgatccgct cgccgcgaag gttgtgccgg tccgcctcgc
     1141 tgaccgcgcc gagcgccacc tgcgcgacct gggcaccgcc gccgacgacg atcacgcgct
     1201 tgccgaagac ctggtcgagc gcccgggtcc ggtggatcga gcggacatcg ggcaggctct
     1261 cgagcccgtt cgacaacgcg tcctgggtga caccctcgac ctcgagctcg atctcggtca
     1321 ggggcggatc gccgtcggtc tcgcggacgg tggcgagcgc ccggatgcgg ccgccgagct
     1381 cgttgacccg ggcggtgacc gccgagatcg cctcgggccg gtcgaccagg tcgaaccgga
     1441 tcgccgccgc ctcggcggcc cgtcgtcgga ccatcagccg agcgaacccc gtcccgcggc
     1501 acccgggcgc aggtcgctga ccgacatcga gtcgggctcc accccgccgg ccgggtcgtg
     1561 ctcctcgtag gccagtccga gaccggcgaa cgcctcgcgg gtggcagccg cgtccgacgt
     1621 cgtgagcatc agggcgccat cggtgtcctc ggccaccccg acgatcccgg tgatgttgac
     1681 gccgcgatcg cc
//
LOCUS       DATDDI010000333         3284 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_194676, whole genome shotgun sequence.
ACCESSION   DATDDI010000333 DATDDI010000000
VERSION     DATDDI010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194676"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VIU37_04770"
     CDS             complement(<1..449)
                     /locus_tag="VIU37_04770"
                     /inference="COORDINATES: protein motif:HMM:NF017051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013291.1"
                     /translation="MARARERVVALVTHARTVPAIERGRFAAQLREGPAGGAILVETC
                     HRVEAYLVTPHDPAQVAEALLLPAGGGVLTGRDAVRHAIAVAVGSDSVVVGEDQILHQ
                     LRGAVAAARSEGRLDSELERLFALALRAGRRARSWRQGRQPSLADLAL"
     gene            complement(449..1171)
                     /locus_tag="VIU37_04775"
     CDS             complement(449..1171)
                     /locus_tag="VIU37_04775"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013292.1"
                     /translation="MARRPGPDRTWVGLSEASRLLGVSPATLRRWSDAGRLRVFTTPG
                     GHRRFSRATLERLLPADRSKRPSLSGAGLTPTRIARTYRRLGRAGADMPWVVALDDRQ
                     RLVFRERGQALAASLLQHLDAATPEATAHHLKEASVTAADYGRLAASLGLSLSQTVEG
                     FLRFRAPFHHELAVAARRRGFDAAETAELLEVAERAMDHLLVATMTGHSVSAGRAQRG
                     MPLTDHPTAGEPPTREPSSEPS"
     gene            complement(1337..2776)
                     /locus_tag="VIU37_04780"
     CDS             complement(1337..2776)
                     /locus_tag="VIU37_04780"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013293.1"
                     /translation="MTRTRSSAAWAFAITAIALFMVSLDNLVVTTALPVIRRDLGSSL
                     QDLEWMVNAYTLTFAVLLLTGAALGDRFGRRRLFAIGLVIFTAGSAAAALAPSSTVLI
                     AARAVQGLGGAIVIPLTLTILSASVSPQRRALALGAWGGIGGLAIAVGPLVGGAIAQG
                     VNWHWIFWLNVPVGIVAIVLATLRLPESRGPEGRLDLLGLGLASGGLLGLVWAVIHGN
                     DDGWTNPGILGAFAVGALLLILFAAWERRAANPMLPLHMFRSRAFAAANAVSLLMYFG
                     MFGSIFLLSQFFQVVQGLNPFEAGLRVLPWTAMPAVVAPIAGLLAGRIGSRPILVSGL
                     ALMAAGLAWLAAVSSPTVPYAAFVPAFVVSGIGMGMFFAPIANVVLSAVYPEEEGKAS
                     GANNAIREVGGVFGVAVLASVFSANGSFASPQAYVDGLVPAVWVGAAVVAVAAVVALA
                     IPARVAAGIRRPVTVPELVRTRTEVDLAG"
     gene            complement(2838..>3284)
                     /locus_tag="VIU37_04785"
     CDS             complement(2838..>3284)
                     /locus_tag="VIU37_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013294.1"
                     /translation="DRAGVSQPYLFQLFGTKKDLFIEAVHACFARTRSTFEASAAAVA
                     AGSGDPAAVLEAMGCSYHDLLRDRDMLRLQLHAYAACDDPEIRAVVRGEWSVLHETVT
                     RLSGADPAAIHAWFAEGMLLNVAAALGNLDDAVDLKLDLGGAFAWH"
BASE COUNT          543 a         1141 c         1238 g          362 t
ORIGIN      
        1 agcgcgagat cggccagcga cggctgccgg ccctggcgcc aggaccgggc gcgccgaccg
       61 gcgcgcagcg cgagcgcgaa cagtcgttcc agctcggaat cgaggcgtcc ctccgatcgc
      121 gccgcggcga cggcgccgcg aagctgatgg aggatctggt cctcgccgac caccacggag
      181 tccgagccga cggcaacggc gatcgcgtga cggaccgcgt cgcgcccggt gaggacgccg
      241 ccgccggcgg gcagaaggag cgcctccgcg acttgcgccg gatcgtgcgg cgtgaccagg
      301 tacgcctcga cccggtggca cgtctcgacc aggatcgcgc cgcccgccgg cccctcccgc
      361 agctgtgccg cgaaacggcc gcgctcgatc gccgggaccg tccgggcgtg ggtcacgagg
      421 gccacgaccc gctcgcgtgc ccgcgccatc aggacggctc cgatgagggc tcgcgcgtgg
      481 gcggctcgcc ggcggtcggg tggtcggtga gcggcatgcc gcgctgggca cggccggcgg
      541 acacgctgtg cccggtcatg gtcgcgacca gcagatggtc catggcacgc tcggcgacct
      601 cgaggagctc cgccgtctcc gcggcgtcga acccgcgccg gcgggcggcc accgccagct
      661 cgtgatggaa cggcgcgcga aaccggagga atccctcgac ggtctggctg agggacaggc
      721 cgagcgaggc cgccagccgg ccgtagtcgg cggccgtcac cgacgcctcc ttcaggtggt
      781 gggccgtcgc ctcgggcgtc gcggcgtcga ggtgctggag gaggctggcg gcgagcgcct
      841 gcccccgttc acggaacacg aggcgctgcc gatcgtcgag cgcgaccacc cacggcatgt
      901 cggcgccggc gcggccaagc cgccggtacg ttcgcgcgat ccgcgtcggg gtgaggccgg
      961 cgccgctgag ggacgggcgc ttcgaccggt ccgccgggag caggcgctcg agggtggctc
     1021 gcgagaaccg tcgatggccg ccgggagtgg tgaagacgcg gagtcgcccg gcgtcgctcc
     1081 agcgacggag ggttgccggc gagacgccga gcaggcggct ggcctcggac aggccaaccc
     1141 aggtgcgatc ggggccggga cgacgggcca aaatctaccc aaatctatct gaaggtggac
     1201 gacccgctca atgtagcacg gaagccgggc ggcccccgcc gagccgcctg gcgagcaggg
     1261 ctgggttgcg cccggaggaa caggatcggc cggcgacccc ggtgggccgc cggccgagcg
     1321 gtccggcgag gtttgctcag ccggccaggt ccacctcggt tcgggttcgt accagctccg
     1381 gcacggtgac cgggcggcgg atcccggcgg cgacgcgggc cgggatggcc agcgccacga
     1441 cggcggccac ggccacgacg gccgccccga cccagacggc ggggacgagg ccgtcgacgt
     1501 aggcctgcgg gctggcgaac gaaccgttgg ccgagaagac cgatgccagg accgcgacgc
     1561 cgaacacgcc gccgacctca cggatggcgt tgttggcacc cgacgccttg ccttcctctt
     1621 cggggtagac ggctgacagg acgacgttgg cgatcggggc gaagaacatc cccatcccga
     1681 tcccgctcac gacgaaggcc ggcacgaacg cggcgtaggg cacggtcggg ctgctcaccg
     1741 cagcgagcca cgccagcccg gcggccatga gcgcaagccc cgagaccagg atcggacggg
     1801 acccgatccg cccggccagc agcccggcga tgggcgccac gacggccggc atcgccgtcc
     1861 acggcaggac ccggagcccc gcctcgaacg ggttcaggcc ctggacgacc tggaagaact
     1921 gggacagcag gaagatcgat ccgaacatcc cgaagtacat cagcagcgag acggcgttgg
     1981 cggcggcgaa cgcgcggctg cggaacatgt ggagcggcag catcgggttg gcggcgcggc
     2041 gctcccaggc cgcgaacagg atgaggagca gggcgccgac ggcgaaggcg ccgaggatgc
     2101 cggggttggt ccacccgtcg tcgttgccgt ggatgaccgc ccagacgagc ccgagcaggc
     2161 cgccgctggc gagcccaagt cccaggaggt cgagccggcc ttcgggtccg cgcgattccg
     2221 gcagacgaag ggtggccagc acgatggcga cgatgccgac cggaacgttg agccagaaga
     2281 tccagtgcca gttgacgccc tgggcgatgg cgccgccgac gagcggcccg accgcgatcg
     2341 ccaggccgcc gatcccgccc caggcaccga gcgccagggc gcgccgctgc ggggagaccg
     2401 acgcggacag gatcgtcagg gtcagcggga tcacgatggc cccacccagc ccctggaccg
     2461 cgcgtgcggc gatcagcacc gtgctcgacg gggcgagcgc ggcggcggcc gagccggccg
     2521 tgaagatgac cagcccgatc gcgaacaacc gacggcggcc gaagcggtcg ccgagggccg
     2581 cgccggtgag caggagcacg gcgaaggtca gcgtgtaggc attgaccatc cactcgagat
     2641 cctggagcga tgagccgaga tcgcgccgga tcaccgggag cgcggtggtc acgacgaggt
     2701 tgtcgagcga gaccatgaac aacgcgatgg ccgtgatggc aaaggcccag gcggccgacg
     2761 agcgcgtgcg agtcatggga cgagactcct tcctagttag tactcactaa gtaacgacga
     2821 caaaaaaggg gcggcgatca gtgccaggca aaggcacctc cgaggtcgag cttgaggtcg
     2881 acggcgtcgt cgaggttgcc gagcgcggcc gccacgttga gcagcatgcc ctccgcgaac
     2941 caggcgtgga tcgccgccgg atcggctccc gacaaccgcg tgaccgtctc gtggaggacc
     3001 gaccattccc cgcgaaccac ggcgcggatc tcgggatcgt cacaggccgc gtacgcgtgg
     3061 agctggagtc gcagcatgtc ccggtctctg agcaggtcgt ggtagctgca gcccatcgcc
     3121 tcgagcacgg cggcagggtc gcccgacccg gccgcaaccg ccgcggcact ggcctcgaac
     3181 gtcgagcggg tgcgcgcgaa gcacgcatgg accgcctcga tgaacaggtc cttcttcgtg
     3241 ccgaacaact ggaacaggta cggctgcgag acgcccgccc ggtc
//
LOCUS       DATDDI010000334         1507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_527423, whole genome shotgun sequence.
ACCESSION   DATDDI010000334 DATDDI010000000
VERSION     DATDDI010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527423"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VIU37_04790"
     CDS             complement(<1..680)
                     /locus_tag="VIU37_04790"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY6013295.1"
                     /translation="MTTMSEIGPVGEMPPEQLVRAAGLVREGRMVSLAATRYPGMPLF
                     PGHPPFQVLNYRTPRGIRVTGAKPWGPINDAGLGYMAEYVMATSHSGAHMDALAHMTV
                     DDDMHWYGGGTADEHLTDFGPTFGDASHLPPFFTRGVLLDAPGYRGIDCLPRGSAIDA
                     AECDAICAAQGVEVRPWDVVVVRTGYMGLWPDVEAMAAHKTPGPDISAARWLLERGVV
                     ATGSDTET"
     gene            complement(677..>1507)
                     /locus_tag="VIU37_04795"
     CDS             complement(677..>1507)
                     /locus_tag="VIU37_04795"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6013296.1"
                     /translation="DELGAPLDWVTVVMGDTAVVPSDQQTSASRSTVLMGNAVLAACR
                     KIQDDVRAMAARLHGVDAASIAVDHGTVRLPDRELPIVDVVKAGLGRLGGELIGNGEM
                     RKDAEPDHPLGGSAAFFEFNCTAVEAGVDEETGDVTILRHVTVSDVGRAINPLQVRMQ
                     DEGAAIQGLGHTLMEHYIFDETGRIRNLGAIDYRIPTSMDLPLEMVSATIENADGPGP
                     YGSKGMSEGALLCVAPAVAAAVHDATGAVIRDLPLTPERVWRALGERPSGASRGEGTE
                     "
BASE COUNT          198 a          539 c          548 g          222 t
ORIGIN      
        1 tacgtctcgg tgtcgctgcc ggtggcgacg acgccacgct cgagcagcca gcgcgccgcg
       61 gagatgtcgg ggcccggcgt cttgtgggcg gccatcgcct cgacgtcggg ccacaggccc
      121 atgtagccgg tccggacgac caccacgtcc cacggccgca cctccacccc ctgcgcggcg
      181 cagatggcat cgcattcggc ggcgtcgatc gccgaaccgc ggggcaggca gtcgatgccc
      241 cggtagcccg gtgcgtcgag gagcacgccg cgggtgaaga acggcggcag gtgggacgcg
      301 tcgccgaacg tcgggccgaa gtcggtgagg tgctcgtcgg ccgttccgcc gccgtaccag
      361 tgcatgtcgt cgtcgacggt catgtgggcg agggcgtcca tgtgggcgcc ggaatgcgac
      421 gtggccatga cgtactcggc catgtagccg agtccggcgt cgttgatcgg tccccacggc
      481 ttggcgccgg tgacgcggat cccgcggggc gtccggtagt tcagcacctg gaagggcgga
      541 tgaccgggga acagcggcat gcccgggtag cgggtggccg ccagcgagac catccgaccc
      601 tcgcgaacca ggccggcggc tcgaaccagc tgctccggcg gcatctcgcc gaccgggccg
      661 atctcggaca tcgtcgtcat tccgtgccct cccccctgct cgccccggac ggccgctcgc
      721 cgagcgctcg ccagacgcgc tccggcgtga gcggcaggtc tcggatgacg gcgccggtgg
      781 cgtcgtggac cgccgcggcc acggccgggg cgacgcacag gagcgcgccc tcgctcatgc
      841 ccttggagcc gtacgggccc ggaccgtcgg cgttctcgat cgtcgcgctg accatctcga
      901 gcggcaggtc catgctcgtc gggatccggt agtcgatcgc gccgaggttc cggatccggc
      961 cggtctcgtc gaagatgtag tgctccatca gcgtgtggcc gaggccctgg atcgcggcgc
     1021 cctcgtcctg catccggacc tggagcggat tgatcgcgcg acccacgtcc gacacggtca
     1081 cgtgccgcag gatcgtgacg tcgccggtct cctcgtccac gccggcctcg acggcggtgc
     1141 agttgaactc gaagaaggcg gcgctcccgc cgagcggatg atccggctcg gcgtccttgc
     1201 gcatctcgcc gttgccgatc agctccccgc ccagccggcc gagtcccgcc ttgaccacgt
     1261 cgacgatcgg cagctcgcgg tcgggcagcc ggacggttcc gtggtcgacg gcgatcgagg
     1321 ccgcgtcgac gccgtggagc cgcgcggcca tggcccggac gtcgtcctgg atcttgcgac
     1381 aggcggcgag cacggcgttg cccatcagga ccgtcgaccg gctggccgag gtctgctggt
     1441 cggacggaac gaccgcggtg tcgcccatga cgacggtgac ccagtcgagc ggcgcgccga
     1501 gctcgtc
//
LOCUS       DATDDI010000335         2908 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_361180, whole genome shotgun sequence.
ACCESSION   DATDDI010000335 DATDDI010000000
VERSION     DATDDI010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361180"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIU37_04800"
     CDS             <1..240
                     /locus_tag="VIU37_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013297.1"
                     /translation="LIGYGGGAIALQGIKSGERYGTVMQMPATEGRLGTEQLINAIRT
                     GTPAPGMDPLETLPEGGVVTSANVDTFLPLAEWPG"
     gene            287..1780
                     /locus_tag="VIU37_04805"
     CDS             287..1780
                     /locus_tag="VIU37_04805"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEY6013298.1"
                     /translation="MVHLEVRGLGKSFGATRALDDVSIEIERGTVHAFVGENGAGKST
                     LGKIVAGVFPPDQGDLVLRGTPVAFRSPREALERGIAIVAQEVALVPQLTVAQNVFLG
                     AEPRRAGLIDRRAMAKRFDRLATESGFDLDGHAVVGRLSIAEQQQVEILRSLARQADL
                     IVLDEPTASLSAKETERLHEIVRSLRAGGRTVILVSHFLAEVLELADTITVLRDGRVV
                     RTGPASVETESSLVAAMLGRPAARAYPAKQPARPDSPVVLSVRHLSAPGVRDVSLELR
                     SGEIVGVAGLIGAGRSELARAIYGANPLTAGEVQAGASRVGSTPAASLQAGVAMIPES
                     RKDDGLFLRRPIRENVSLSTVASFATFGFVRRGRERKAVGTALQSVAGSSLLEAAAGA
                     LSGGNQQKLLFARTLLVHPGVLIADEPTRGVDVGSKHDLYELIVRLAADGMAVLFISN
                     EMEEILGLAHRVVVMRQGRLVAELAGEDMTEAAILEAAFGTVAGTAA"
     gene            1777..2763
                     /locus_tag="VIU37_04810"
     CDS             1777..2763
                     /locus_tag="VIU37_04810"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013299.1"
                     /translation="MTASEQAIPERAVPTLSQRAQGAIQRFGIGIPFAITFVVLSLIS
                     PPFLRSQNLTNILDQQSGIIIVACAGSVVLIAGGIDLSIGAIYGLAGAIALNTASSVS
                     SPLGVVAGLAVGLAVGLVNGIVVTRFRINALIGTLAMSFVVAGIAAIVTKGNLVVAFD
                     HPDFQQFAATRILGITSAAWMMIVIAILATITLSRTTFGRYIYAAGGNAQAARLGGVR
                     VDAIRVATFALSGMAAGLAGTIDSSRVLSAQATSGGQFLTFTVLTGIIVGGTSILGGE
                     GSMQRTVVGCLFVALVANGFNLLGLDPFYQQVTLGVILLLAVGLDAWSRRFE"
BASE COUNT          405 a         1045 c         1001 g          457 t
ORIGIN      
        1 ctgatcggct acggcggcgg cgcgatcgcg ctccagggca tcaagagcgg cgagcgctac
       61 ggcacggtca tgcagatgcc cgcgaccgag ggtcgcctcg gcaccgagca actgatcaac
      121 gccatccgga ccgggacccc cgcgccgggc atggatccgc tcgagacgct gccggagggt
      181 ggcgtcgtca ccagcgccaa cgtcgatacc ttcctcccgc tcgcggagtg gccgggctga
      241 gcgaccgaac cgccatcgcc gcgtgatggc cgcacaggta cccaccatgg tccatctcga
      301 agtccgcggg ctgggcaagt ccttcggggc gacccgtgcc ctcgacgacg tctcgatcga
      361 gatcgaacgc ggcaccgtcc acgccttcgt gggtgagaac ggggccggga aatcgaccct
      421 cggcaagatc gtggccggtg tcttcccgcc ggaccagggc gacctggtcc tgcgggggac
      481 gccggttgcg ttccggtcgc cgcgcgaggc gctcgaacgg gggatcgcga tcgtcgccca
      541 ggaggtcgcg ctcgttcccc agctgaccgt ggcccagaac gtcttcctgg gcgccgagcc
      601 gcggcgcgcc ggtctcatcg accgtcgcgc catggccaag cggttcgatc gcctcgcgac
      661 cgaatccggc tttgacctcg acggccatgc cgtcgtcggc cgtctctcga tcgccgagca
      721 gcagcaggtc gagatcctcc gatcgctggc ccggcaggcc gacctgatcg tcctcgacga
      781 gccgaccgcg agcctctcgg ccaaggagac ggaacggctc cacgagatcg tccgctcgct
      841 ccgcgccggt ggacgaacgg tcatcctcgt ctcgcacttc ctggccgagg tgctcgagct
      901 ggccgacacg atcacggtgc tccgcgacgg gcgtgtcgtc aggacgggcc ccgccagcgt
      961 cgagaccgag agcagcctcg tcgccgcgat gctcggccgg ccggcggccc gcgcctatcc
     1021 cgccaagcag ccggcccgcc ccgacagccc ggtcgtgctg tcggtccggc acctgtccgc
     1081 ccccggcgtg cgcgacgtct cgctcgagct ccgatccggt gagatcgtcg gcgtcgcggg
     1141 actgatcggc gccggccgga gcgagctcgc ccgtgccatc tacggtgcga atccgctgac
     1201 cgccggtgag gtccaggccg gtgcgagccg ggtcggcagc acgcccgccg cctcgctgca
     1261 ggccggggtc gccatgatcc ccgaatcccg aaaggacgac gggctgttcc tccgccgtcc
     1321 catccgcgag aacgtcagcc tgtcgaccgt cgcctcgttc gccacgttcg ggttcgtccg
     1381 gcgcggacgg gagcggaagg cggtcggcac ggcgctccag tcggttgccg ggtcgtcgtt
     1441 gctcgaggcc gcggccggtg cgctgtcggg tggcaaccag cagaagctgc tcttcgcgag
     1501 gacgctcctg gtccacccgg gcgtgctgat cgcggacgag ccgacgcgtg gcgttgacgt
     1561 cggttccaag cacgacctct acgagctgat cgtgcgcctc gccgccgacg gcatggccgt
     1621 gctgttcatc tcgaacgaga tggaggagat cctcggtctc gcccaccggg tcgtcgtcat
     1681 gcgccaggga cgactcgtcg cagagctggc aggagaggac atgacggaag cggcgatcct
     1741 ggaagcggcg ttcggcacgg tcgcggggac ggccgcatga cggcgtcgga gcaggccatc
     1801 ccggagcgcg cggtcccgac cctgagccag cgcgcgcagg gtgcgatcca gcggttcggg
     1861 atcggcatcc cgttcgcgat cacgttcgtg gtgctgagcc tcatcagtcc gccgttcctg
     1921 cgatcccaga acctgacgaa catcctcgac cagcagtccg ggatcatcat cgtcgcctgc
     1981 gccgggtcgg tggtcctcat cgccggcggg atcgacctgt cgatcggcgc gatctacggc
     2041 ctcgccgggg cgatcgcgct caatacggca tcgtcggtgt cgagcccact cggcgtcgtc
     2101 gcgggcctcg cggtcgggct tgccgtcggc ctcgtaaacg gcatcgtggt gacgcgcttc
     2161 cggatcaacg cgctgatcgg cacgctggcg atgtccttcg tcgtcgccgg gatcgcggcg
     2221 atcgtgacca agggcaacct cgtggtcgcg ttcgatcacc cggacttcca gcagttcgcg
     2281 gcgacgcgga tcctcggcat cacgagcgcg gcctggatga tgatcgtcat cgcgatcctg
     2341 gccacgatca cgctcagccg gaccaccttc gggcgataca tctatgccgc cggcggcaac
     2401 gcgcaggccg cgcgcctggg cggggtccgc gtcgacgcga tccgggtcgc gacgttcgcg
     2461 ttgagcggca tggccgccgg gctggccggc acgatcgact cgtctcgggt cctgagcgcg
     2521 caggccacga gcggcgggca gttcctgacg ttcacggtcc tgaccggcat catcgtcggc
     2581 ggcacgagca tcctcggcgg cgagggctcg atgcagcgga cggtggtcgg ctgcctgttc
     2641 gtggccctcg tggccaacgg gttcaacctg ctcggcctcg accccttcta ccaacaggtc
     2701 acactcggcg tcatcctgct cctggcagtc ggcctggacg cctggtcccg ccggttcgag
     2761 taagacgcct gaggcttcgc gatgcatcac gtctcccata tcgactggtc gttcatcgac
     2821 cggcctacgc cgccgtcggc gaccgcatcc ggcctggcgc gacagcgcct catcggtccg
     2881 gaccagggcg cggtccacac cgagatcg
//
LOCUS       DATDDI010000336         2098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_277966, whole genome shotgun sequence.
ACCESSION   DATDDI010000336 DATDDI010000000
VERSION     DATDDI010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277966"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..964)
                     /locus_tag="VIU37_04815"
     CDS             complement(146..964)
                     /locus_tag="VIU37_04815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013300.1"
                     /translation="MTSAEASPPTRTLGDPLAEALRLISLADDRGLQVRLMGGLAFHA
                     QAPTWTARIDRDGRDLDLATRARDRKAVVDLLVAEGYTPDRQYNALYGHKQLYFVDVP
                     RRRPVDILVDKLEMCHQFEFSGRLGAAHPTLPLAELLLSKLQIVKINRKDVLDALILL
                     AEHPLGEADGTGEADDKRSMINVRRIVELTSSDWGWWRTMTGNLAKLEGFLAGDVQPN
                     ELDVGRPLRFDPAAQIVALRARIDAAPKSARWRMRARVGDRVSWYELPEEVGHG"
     gene            complement(1217..>2098)
                     /locus_tag="VIU37_04820"
     CDS             complement(1217..>2098)
                     /locus_tag="VIU37_04820"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEY6013301.1"
                     /translation="GGDVLVDPNDGCNILQEYVVLSLSVTQDCANPDPAQHPNAFLDI
                     NDATTYKVAPPDINARFIAPFVADDQNIDNWLAGGNSIWFQKKGFAIRSGSEWQNVYN
                     LGGSGVRVATAMAYSGDTAIAAWCGPCNNAGFTRGVAVGSYDGTNWTWAESPLTGVPN
                     RYVGGVAIDGDGNLYLAMNGFNRRFTEGPGAGVGHIFKSTDDGATWTDIGGDPTAAGK
                     FPDVPANSIKVLPGGGIVVGTDLGVVYSADGGGTWTRLGGNFPATVAMDVELGPDGNI
                     YAATHGRGIWRIDASGL"
BASE COUNT          300 a          714 c          747 g          337 t
ORIGIN      
        1 aggcggccgc caggacacgc agtctccgtc tcatcggatc tccctcacgg atacgactcg
       61 tcccccggag gcgggcccac cgtagccgcc atgggccatt cgggggaggg ccgttcgtac
      121 cgttggcggt gcgccccggc aacgatcagc cgtggccgac ctcttcgggc agttcgtacc
      181 agctcacccg gtcgccgacg cgtgcccgca tccgccacct ggcggatttc ggggccgcgt
      241 cgatgcgcgc gcggagggcg acgatctggg cggcggggtc gaaccgcagc ggccggccga
      301 cgtcgagctc gttcggctgg acgtcgccgg ccaggaagcc ctcgagcttg gcgaggttgc
      361 cggtcatcgt ccgccaccaa ccccagtcgg acgaggtcag ctcgacgatc cgccggacgt
      421 tgatcatcga ccgcttgtcg tcggcctcgc cggtaccgtc cgcctcgccg agcgggtgct
      481 ccgccagcag gatcagcgcg tcgagcacgt ccttgcgatt gatcttgacg atctgcagct
      541 ttgacagcag cagctccgcc agcggaagcg tcgggtgggc cgcgccgagg cgaccggaga
      601 actcgaactg gtggcacatc tcgagcttgt cgaccaggat gtcgacgggc cgccgccgcg
      661 gcacgtccac gaagtacagc tgcttgtggc cgtacagcgc gttgtactgc ctgtccggcg
      721 tgtagccctc ggcgaccaac aggtccacca cggccttgcg atcgcgagcc cgggtcgcca
      781 ggtccaggtc gcgcccgtcg cggtcgatcc gggcggtcca ggtcggcgcc tgcgcgtgga
      841 acgcgagccc gcccatcagc cggacctgga gccctcgatc gtcggccagc gagatcagcc
      901 gcagcgcctc cgcgagcggg tcgccgaggg tccgcgtggg gggcgaggct tcggccgagg
      961 tcatcgtggc agcgggctcc gagttcgagc tgggacgggc gaattcggca ggcatccgcc
     1021 tcgggtcgcg aggggccgcc agtataccgg cggggtctct cgcgttcgtg cgaagcccgg
     1081 ccggcgggat gcggcggacc gtgacccgaa ccggggcctg ttgcggacga cgattccctg
     1141 tccatccgca gacaggagaa aaggcccgcc ggcgaaccgg cgggccttct cgtttgacgt
     1201 tccgacgtct gaagggctag agccctgaag cgtcgatcct ccagatgccg cgaccgtggg
     1261 tcgccgcgta gatattgccg tcgggtccga gctccacgtc catggcgacc gtcgccggga
     1321 agttcccgcc gagccgggtc caggtgccgc ccccgtcggc gctgtagacg acgccgagat
     1381 cggtgccgac cacgatcccc ccacccggga ggaccttgat gctgttggcg gggacgtcgg
     1441 ggaacttgcc cgcggcggtt ggatcgccac cgatgtcggt ccaggtggcc ccgtcgtcgg
     1501 tcgacttgaa gatgtgcccg acgccggcac cgggtccctc ggtgaagcgg cggttgaagc
     1561 cgttcatcgc gagatacagg ttgccgtcgc cgtcgatcgc cacgccgccg acgtaccggt
     1621 tcggcacgcc ggtgaggggt gactcggccc atgtccagtt cgtgccgtcg tagctaccga
     1681 cggccacgcc gcgggtgaaa ccggcgttgt tgcacgggcc acaccacgcg gcgatggccg
     1741 tgtctcccga gtacgccatg gcggtggcga cacgaacgcc cgagccgcca aggttgtaca
     1801 cgttctgcca ctcggagccg gaccggatgg cgaagccctt cttctggaac cagatgctgt
     1861 tgccaccggc cagccagttg tcgatgttct ggtcatcggc cacgaacggc gcgatgaacc
     1921 gggcgttgat gtcgggcggc gccaccttgt aggtcgtcgc gtcgttgatg tcgaggaacg
     1981 cgttcgggtg ctgcgcgggg tcggggttcg cgcagtcctg cgtgaccgac agcgacagga
     2041 ccacgtactc ctggaggatg ttgcagccgt cgttcgggtc gacgaggacg tcgccgcc
//
LOCUS       DATDDI010000337         1862 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_111267, whole genome shotgun sequence.
ACCESSION   DATDDI010000337 DATDDI010000000
VERSION     DATDDI010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111267"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..378)
                     /gene="rplL"
                     /locus_tag="VIU37_04825"
     CDS             complement(4..378)
                     /gene="rplL"
                     /locus_tag="VIU37_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEY6013302.1"
                     /translation="MATLTQDDLLGAIDKMTVLELSEFIKRFEERYGVTAAAPVAAAA
                     AAPAAASGDGAAPAATEEQTEFTATLTEIGPNKIPVIKVVRELTGLGLKEAKDLVDAT
                     PKAVMSSTGRRGRRRTTRSGPA"
     gene            complement(442..969)
                     /gene="rplJ"
                     /locus_tag="VIU37_04830"
     CDS             complement(442..969)
                     /gene="rplJ"
                     /locus_tag="VIU37_04830"
                     /inference="COORDINATES: protein motif:HMM:NF000955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEY6013303.1"
                     /translation="MPTEAKRETVVELRAELAQARTLIVSEYRGLKVKEIAEIRRALR
                     KQDVTYRVVKNRLLRIAADDSVGAALGPLLTGPTAIAFGNDEARTAKAVIDATRPYNR
                     VVRITGGVLGDRAIGAEDVTRLAALPSREVLLAKLAGGMQAPMSSLASLFAAPLRNLG
                     YALQQVADQKARAGS"
     gene            complement(1408..>1862)
                     /locus_tag="VIU37_04835"
     CDS             complement(1408..>1862)
                     /locus_tag="VIU37_04835"
                     /inference="COORDINATES: protein motif:HMM:NF012890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEY6013304.1"
                     /translation="EALRAGADEVGGEDLVKKIEAGWLEFDVALATPDSMGMVGKLGK
                     ILGRRGLMPNPKAGTITFDLERAVKEVKGGRVEFRVDKAGIVHVAVGKSSFEAPAIVE
                     NLAALVDAINRAKPTGAKGQYLKALTIASSMGPGIRVDVPGVLAAAVA"
BASE COUNT          216 a          645 c          692 g          309 t
ORIGIN      
        1 ggatcacgct gggccgctcc gggtcgtccg gcggcgcccc cttcggcccg tggagctcat
       61 gacggccttc ggggtcgcgt cgacgagatc cttggcctcc ttgaggccga ggccggtcag
      121 ctcgcggacg accttgatca ccgggatctt gttcggtccg atctcggtca gggtggccgt
      181 gaactcggtc tgctcctcgg tcgcggccgg tgcggcgccg tcgcccgagg cggcagccgg
      241 cgctgcggcg gcggcggcca cgggggccgc ggcggtcacg ccgtagcgct cctcgaagcg
      301 cttgatgaac tcggacagct cgagcacggt catcttgtcg atcgcgccga gcaggtcgtc
      361 ctgggtcagg gttgccatgt cagttgctcc ttcgggtggt tgtcggggtg gtgaagcgaa
      421 cggggccgcg aggatccggc actacgagcc ggcacgcgcc ttctggtcgg cgacctgctg
      481 cagggcatac cccaggttgc gcagcggggc cgcgaagagg ctggcgagcg agctcatcgg
      541 cgcctgcatg ccgccggcca gcttggccag cagcacttcg cgcgacggga gcgccgcgag
      601 ccgggtgacg tcctcggcac cgatcgctcg gtcgcccagc acgccgccgg tgatccgcac
      661 gacacggttg tacggccggg tcgcgtcgat gacggccttg gcggttcgcg cctcgtcgtt
      721 cccgaaggcg atcgccgtcg ggccggtcag gagcgggccg agcgcggcgc cgaccgaatc
      781 atcggcggcg atccgcagca ggcggttctt gacgacgcga taggtgacgt cctgcttgcg
      841 cagggcgcgc cggatctcgg cgatctcctt caccttgagg ccgcggtact cggagacgat
      901 cagcgtccga gcctgggcga gctccgcccg cagctcgacg accgtctcgc gtttggcctc
      961 cgtgggcatg ggccactcct ttcgggtcgg cagttccgac cgttccttcg gcacgcgggc
     1021 cggcgtgcgg cggtggggcc cgatcggcga tcgggggccc ctgcgacggc ccatggcgcc
     1081 ctccgaggag ggtcgacccc gttgcgcagg ggcgctgccc acccgaaggt ggagcggcac
     1141 cggtctgcct cggcgtgctc gtcggcgtcc ccggccgacc gcttcgcgtc ggcttgggcg
     1201 aatgctccgc attcgcgtct cccgacgcgg gagtcgattg gcaggtccgg tccggcggat
     1261 caagccccgt ccgtcacggc ctcgcggtcg tggcgggctg cgggcgcagg ctgtctgcgg
     1321 cggtccgtca aatccatatg ttcgggtggc gcctctcggt cgtcaccgca cctggtggcc
     1381 ggcgcgggcc ggcggggaac tgggagatca ggcgaccgcg gccgccagga cgccggggac
     1441 atcgacccgg atgcccgggc ccatgctgct ggcgatggtc aatgccttga ggtactggcc
     1501 cttggcgccg gtcggcttgg cgcggttgat cgcgtcgacc agggccgcga ggttctcgac
     1561 gatggcgggg gcctcgaagc tgctcttgcc gacggcgacg tggacgatcc ccgccttgtc
     1621 gacgcggaac tcgacccggc cgcccttcac ttccttgacg gcgcgctcga ggtcgaaggt
     1681 gatggtgccg gccttggggt tcggcatcag gccgcgtcgt ccgaggatct tgccgagctt
     1741 gccgaccatg cccatcgagt cgggagtcgc cagagcgacg tcgaactcga gccagccggc
     1801 ctcgatcttc ttcaccaggt cctcgccgcc gacctcgtcc gcgccggcgc ggagcgcctc
     1861 ct
//
LOCUS       DATDDI010000338         1717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_49090, whole genome shotgun sequence.
ACCESSION   DATDDI010000338 DATDDI010000000
VERSION     DATDDI010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49090"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VIU37_04840"
     CDS             complement(<1..761)
                     /locus_tag="VIU37_04840"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6013305.1"
                     /translation="MFRRARVRLTVLYIALFALVLGVFSIAFYLGFLTILAPAFDIGP
                     ELTTEAFAQAAYQVTVERIGLALIVGNVVVVVLVGIAAWILAARTLRPIDEAHARQRR
                     FVADASHEMRTPLAAMRSSAESALAAPASEDELRAALAIVASSAERLTRITNDLLMLA
                     RSEELPNRRPGPIDLSVVVSETAETFAIAHPELPRARLSLAADLRVSADPSEIGRIVA
                     NLLDNAIRYSGGANARPVRVVTRMADGEALVEVTD"
     gene            complement(761..1441)
                     /locus_tag="VIU37_04845"
     CDS             complement(761..1441)
                     /locus_tag="VIU37_04845"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013306.1"
                     /translation="MRILIVEDEAAIATAVKRALTADGHAVDIVSDGRQALDWAATYP
                     FDLVLLDVVLPGMDGFAVCSALRDAGVAASIMMLTALDDVQDRITGLDRGADDYLAKP
                     FSMDELKARIRALGRRRLEDRKPRIRIEDLELDPATRDVWRGDRAIHLTAREFALLEL
                     MARHPDQVFTRDRLIDTLWDADFAAESNVVEVYIRSLRRKVDGGRRDGLIETVRGTGY
                     RIRTKAPR"
     gene            complement(1496..>1717)
                     /locus_tag="VIU37_04850"
     CDS             complement(1496..>1717)
                     /locus_tag="VIU37_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013307.1"
                     /translation="PHLADFILASVLKRRGIDGLAELPDEAEWASHAAFAGRWDARSS
                     GRWTGPRPSVARAGGRVKARSPRPAVRLD"
BASE COUNT          253 a          607 c          613 g          244 t
ORIGIN      
        1 tcatcggtga cctcgacgag cgcctcgccg tcggccatcc tggtcacgac ccgaacgggc
       61 ctggcgttcg ccccgccgct gtaccggatg gcattgtcga ggaggttggc gacgatccgg
      121 ccgatctcgc tcggatcggc cgacacccgc aggtccgcgg caagcgacaa ccgggcgcgg
      181 ggcagctcgg ggtgcgcgat cgcgaacgtc tcggccgtct ccgagacgac cacggagagg
      241 tcgatcggtc cgggccggcg gttcgggagc tcctcgctgc gggccagcat cagcagatcg
      301 ttggtgatcc gcgtcaggcg ctcggcggag ctggccacga tcgcgagcgc cgctcgcagc
      361 tcgtcttccg aggcgggcgc cgccagcgcg ctctcggccg acgagcgcat ggccgccagc
      421 ggcgtccgca tctcgtgcga cgcgtcggcg acgaaccgcc gctgccgcgc atgtgcctcg
      481 tcgatcggtc gcagggtccg ggccgccagg atccaggcgg cgatccccac gagcacgacc
      541 accacgacgt tgcccacgat caaggcgagc ccgatccgct ccacggtgac ctggtaggcc
      601 gcctgcgcga acgcctcggt ggtgagctct gggccgatgt cgaaggccgg ggcgaggatc
      661 gtcaggaagc cgaggtagaa ggcgatgctg aacacgccga ggacgagggc gaagagcgcg
      721 atgtacagga ccgtcaggcg gacccgcgcg cgtcggaaca tcatcgcggc gccttcgtcc
      781 gaatccggta cccggtgccc ctgaccgtct cgatcaatcc gtcccgccgg cccccgtcga
      841 ccttccggcg gagggagcgg atgtagacct cgacgacgtt cgattcggcg gcgaaatccg
      901 cgtcccacag cgtgtcgatg agccggtccc gcgtgaacac ctggtcgggg tggcgtgcca
      961 tgagctcgag cagggcgaac tcgcgcgcgg tcaggtggat cgcgcgatcg ccgcgccata
     1021 cgtcgcgggt cgccgggtcg agctcgagat cctcgatccg gatccgcggt ttgcggtcct
     1081 ccaggcggcg tcggcccagc gcccggatcc gtgccttcag ctcatccatg ctgaacggct
     1141 tggccaggta gtcgtcggcc ccgcggtcga ggccggtgat ccgatcctgg acgtcgtcga
     1201 gggcggtcag catcatgatc gacgcggcga cgccggcgtc gcgcagggcc gagcacacgg
     1261 cgaacccgtc catcccgggc agcaccacgt cgagcaggac gagatcgaac ggatacgtgg
     1321 cggcccagtc gagcgcctgc cggccgtcgc tcacgatgtc cacggcgtgg ccgtcggccg
     1381 tcagcgcgcg cttgacggcc gtcgcgatcg cggcctcgtc ctcgacgatc aggatccgca
     1441 cgcagcgtcc tccggaccgg acgtcgactc gacgtcgcgg gtcatgcgct cgatcctaat
     1501 ccagtctgac cgcgggccgc ggcgatcggg ctttcacgcg tccacccgca cgggcgacgg
     1561 acggtcgagg tccggtccag cgcccgctgg aacgagcatc ccagcgaccg gcgaacgcgg
     1621 cgtggctggc ccattcggcc tcgtccggca gttcggccag gccgtcgatg ccgcgtcgct
     1681 tcaggacgga cgccaggatg aagtcggcca ggtgcgg
//
LOCUS       DATDDI010000339         1827 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_590143, whole genome shotgun sequence.
ACCESSION   DATDDI010000339 DATDDI010000000
VERSION     DATDDI010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590143"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..647
                     /locus_tag="VIU37_04855"
     CDS             177..647
                     /locus_tag="VIU37_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013308.1"
                     /translation="MTVPTTAVPEITHPCVRCGAPVPIDVGLCERCNPLGLRDSSASQ
                     VHGIAIGGVAAAVIGLAIVARLAISGVGPFDATIVSATPDAAGLAITLQVTNTGSSAG
                     QTTCRVQDPADRNGGIGGLILSPRIGPGQTLSFTKHLDELGSDVRPLSVECSTP"
     gene            644..1444
                     /locus_tag="VIU37_04860"
     CDS             644..1444
                     /locus_tag="VIU37_04860"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY6013309.1"
                     /translation="MTDPADDLEFARELGCRAGIVLMDHYERLEQIDYKSARDVVTEA
                     DHLSEALIVEHIHERYPADAILAEETGEHRAVAGEAPTSGRGRVWIVDPLDGTVNYAN
                     GIPVFCVSIGLVVDGVPTVGVIVDPTRDEWFGATADGPATLNGRPIRASVKDKVSDFV
                     ISMALSGRSAVTRSRNVRKAIRIPRSMGSAALALAYVGNGRFDAFVQQGGLSAWDVAA
                     AGLIAERGGARVTAMDGGPWFDLAHSPRSIGILAAPAAHHEALLALVR"
     gene            complement(1456..>1827)
                     /locus_tag="VIU37_04865"
     CDS             complement(1456..>1827)
                     /locus_tag="VIU37_04865"
                     /inference="COORDINATES: protein motif:HMM:NF013527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HEY6013310.1"
                     /translation="AVVGDSSDGYPGLPGWGAKSAAAVLLRYGHLEDVPSHASGWKVP
                     GVGGTRAISLAASLREHWAEAMLYRDLARLRTADDGVQIRQHDPDELRWEGVPRADWE
                     AFCEEWGLERLARRPHRWLED"
BASE COUNT          245 a          678 c          665 g          239 t
ORIGIN      
        1 cgcgagacgt gggcgcgctg gcgggaggcc ggcgccgacg gcgcgatcgt cctggcccgg
       61 acgaccgagg acgtggacgc cctggtgggg gccgtcgacc gctggtaggc gcgccacgtg
      121 cgccggcccg acccggccgg cggctcgatg gccccgttcg tggcaacatc tcggccgtga
      181 ccgtccccac gaccgccgtc cccgagatca cccatccctg cgtccggtgc ggcgcgcccg
      241 tcccgatcga tgtcggcctg tgcgaacgct gcaacccgct cggcctgcgg gactcgtccg
      301 cgtcgcaggt ccacggcatc gccatcggcg gcgtcgccgc cgcggtgatc ggcctggcga
      361 tcgtggcccg cctggccatc agcggcgtcg ggccgttcga cgcgaccatc gtgtccgcga
      421 cgccggacgc cgcgggcctg gcgatcaccc tccaggtcac caacacgggg agcagcgccg
      481 gccagaccac ctgtcgcgtc caggacccgg ccgaccggaa cggcgggatc ggcggcctca
      541 tcctcagccc caggatcggg ccgggccaga ccctgtcgtt caccaagcac ctcgacgagc
      601 tcggttccga cgtccggccg ctgtcggtcg aatgcagcac gccgtgaccg atccggcgga
      661 cgacctggag ttcgccaggg agctcggctg ccgggcgggc atcgtgctga tggaccacta
      721 cgagcggctc gagcagatcg actacaagag tgcccgcgac gtggtcacgg aggcggacca
      781 cctgtcggag gccctgatcg tggagcacat ccacgagcgc tacccggccg acgccatcct
      841 ggccgaggag acgggcgagc accgcgccgt cgccggcgag gcgcccacct cgggccgcgg
      901 gcgggtctgg atcgtggatc cgctcgacgg gaccgtgaac tacgccaacg gcatcccggt
      961 cttctgcgtc tcgatcggac tggtcgtcga cggcgtgccc acggtcgggg tgatcgtcga
     1021 tccgacccgc gacgagtggt tcggggcgac ggcggacggg ccggcgaccc tcaacggacg
     1081 cccgatccgg gcctcggtca aggacaaggt gtccgacttc gtgatctcga tggcgctcag
     1141 cgggcggtcc gccgtgacgc ggtcgcgcaa cgtccgcaag gcgatccgca tcccgcgctc
     1201 gatgggatcc gccgcgctcg cgctcgcgta tgtcggcaac ggccggttcg acgcgttcgt
     1261 ccagcagggc ggcctgtccg cgtgggacgt ggcggcggcg gggctgatcg ccgagcgtgg
     1321 cggcgcccgg gtgacggcga tggacggcgg accgtggttc gacctcgccc acagcccgcg
     1381 atcgatcggg atcctggcgg cgcccgccgc ccaccacgag gcactgctgg cgctcgttcg
     1441 ctgaggtcga gcctgtcagt cctcgagcca gcgatgcggt cgccgggcca gccgctcgag
     1501 gccccattcc tcgcagaacg cctcccaatc cgcccgcggg acgccctccc agcggagctc
     1561 gtcggggtcg tgctggcgga tctggacacc gtcgtcggcg gtcctgaggc gagccaggtc
     1621 gcggtagagc atcgcctccg cccagtgctc gcgcagcgag gcggccagcg agatcgcacg
     1681 cgtgccgcca acgccgggga ccttccagcc cgaggcgtgc gacggcacgt cctcgaggtg
     1741 gccgtagcgc aggagcacgg cggccgcgga tttcgcgccc cagcccggga gcccgggata
     1801 gccgtccgac gaatcgccga cgaccgc
//
LOCUS       DATDDI010000340         4161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_111311, whole genome shotgun sequence.
ACCESSION   DATDDI010000340 DATDDI010000000
VERSION     DATDDI010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111311"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1014)
                     /locus_tag="VIU37_04870"
     CDS             complement(<1..1014)
                     /locus_tag="VIU37_04870"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6013311.1"
                     /translation="MLPASRIAGDRPVPHIVTELPGPKARAHVEFDETWTSPSLPRAY
                     PIVPVRGDGLTVEDIDGNLFLDFAAGIAVNSTGHSHPKVVAAIKEQAAELIHFSASDF
                     YLPIYPETCREIARIAPISGRKRVYLGNSGTEVVETAIKLARFATRRPYVVAFLGAFH
                     GRTYGSVSLTASKAKYHAGFAPLLPGIFHAPYGRVEDLRWFDEVLFDKLAPANEVAAI
                     IVEPIQGEGGYIVPEDGFLQGLRRICDEHGILLIADEIQSGAGRTGKMWAIEHWGVEP
                     DILLVAKGIASGMPLAAMVTRAEIMESWSIGAHGSTYGGNPVACAAALATIELLEGGL
                     VDNA"
     gene            1198..3342
                     /locus_tag="VIU37_04875"
     CDS             1198..3342
                     /locus_tag="VIU37_04875"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY6013312.1"
                     /translation="MSLTTLVQSASRLTTRPAPGDVARRASPLFERAIRRLWLQDRPL
                     AELRWAAVTLAAMAFLGLVAGLLHASGDFGRVRLVAAPAALLVAGAAWGPWATRLAHS
                     PAVRLWLGPAVLAVAIVGGGMTDLATLQLPPAAPMVALALAFAAMTPGYLIAAGFVLG
                     TASLIFLAHTFAAFAPDVTSQSTDRFVVNVVVTLLASSGMAIVVRFATEAEARANQLA
                     ARSRERLDVLQRVNDIVGRFDGTQPIRSVVQGVVDDVARDFDIALISMYLPDADGRLS
                     MVGVAGYHEAFHTIQPGVGVIGRAAASRAIQFVPDVLADPDYRAARLDVRSEVAVPVV
                     HSGELLSIVNFEGTEDRPIGPSQVALAEMLAHSLAGALRSARLDDERRERLHAIERVM
                     AVSRALVADLDRPRIVESIVEAAVELLDADVAALFSRGPDGAYRLEAGSGFPRAALGL
                     EVPPGLGLTRRAILERVRTVGVNELASWPAEYRAERPGGETPHAAMAVPILVDGRAAA
                     VLLVSRVGAERTFSELEGGIADLLVAQVAIALHNADLHARVAESALRDPLTGLLNRRY
                     FDEAIETAYATARRSAGPLSLIVLDLDHFSAVNNEHGHSAGDAVLRRVAQAIRNAVRD
                     GDVVVRYGGEEFVVIAPGTDEEVAVEIAERIRNAVIRAGEVPVDGRLVPVTTSAGVAC
                     LVDEPDGHGLFRAADSALLVAKRGGRNRVARI"
     gene            complement(3385..>4161)
                     /locus_tag="VIU37_04880"
     CDS             complement(3385..>4161)
                     /locus_tag="VIU37_04880"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6013313.1"
                     /translation="EVGMRLFHSFSKTWPRPCIVEMGGKNPAIVSRKADLDEAAEGIM
                     RSAFGFGGQKCSANSRVYVERPVHDELVRRLVEKTEAITIGDPLVRANWMGPIIDQRA
                     VDRYQAAVSEARRDGTVFVGGERLSDAGMERGYYVEPTVVGNLPTSHRLFRDELFAPL
                     TAVAPVDSLDEALALANDSVYGLTAGVYSEDPAEVQQFLDRAEAGVLYVNRRAGATTG
                     AWPGIQAFGGWKGSGSTGKAGLSMYYVAQFMREQSHTVVD"
BASE COUNT          566 a         1505 c         1480 g          610 t
ORIGIN      
        1 ggcgttgtcc accaggccgc cctcgagcag ctcgatcgtc gccagcgccg cggcgcaggc
       61 gaccgggttg ccgccgtagg tcgagccgtg ggcaccgatc gaccacgatt ccatgatctc
      121 ggcccgggtg accatcgccg cgagcggcat gccggacgca atgcccttgg cgacgagcag
      181 gatgtccggc tcgacgcccc agtgctcgat cgcccacatc ttgccggtcc ggccggcacc
      241 cgactggatc tcgtcggcga tcagcaggat cccgtgctcg tcgcagatcc ggcgaaggcc
      301 ctggaggaag ccgtcctcgg ggacgatgta cccaccctcg ccctggatcg gctcgacgat
      361 gatcgccgcg acctcgttgg ccggggcgag cttgtcgaac aggacctcgt cgaaccagcg
      421 caggtcctcc acccgcccgt acggcgcatg gaagatgccc ggcagcagcg gcgcgaaccc
      481 ggcgtggtac ttcgccttcg aggcggtcag cgagaccgag ccgtaggtcc gaccgtgaaa
      541 ggcaccgaga aaggcgacga cgtacggccg ccgggtggcg aaccgggcga gcttgatcgc
      601 ggtctccacg acctcggtcc cggagttgcc gaggtagacg cgcttgcggc cggagatcgg
      661 cgcgatgcgg gcgatctcgc ggcaggtctc cgggtagatg ggcaggtaga aatcagaggc
      721 gctgaagtgg atcagctcgg cggcctgctc cttgatcgcc gcgacgacct tcgggtgcga
      781 atggccggtc gagttgaccg cgatcccggc cgcgaagtcc aggaacaggt tgccgtcgat
      841 gtcctcgacg gtcagcccat cgccacggac cgggacgatc ggatacgccc ggggcaggct
      901 cggcgacgtc caggtctcat cgaactcgac gtgcgccctg gccttcggcc cggggagctc
      961 cgtgacgatg tgcggtacgg gacgatcacc ggcgatgcgc gacgcgggga gcaaggtcca
     1021 cctcagggct ggagtgcata acgagtatgc agactggata ttcgagacga gtatagccga
     1081 cggcccgtgg ctcgatggcg gggcggcggg ctcccgctgc ggccggccga atggcggcct
     1141 cggagtagtc ctctcgggtc actgcgtcga gcggaggagc acgcgacgat gcccgcgatg
     1201 tccctgacga ccctcgtcca gtcggcgagc cggctcacca cccgccccgc gcccggcgat
     1261 gtcgcccgcc gggccagccc gctgttcgag cgtgcgatcc gacggctgtg gttgcaggat
     1321 cgcccgctgg ccgagctccg atgggccgca gtcacgcttg ccgcgatggc cttcctcggc
     1381 ctcgtggcgg ggctgttgca tgcgtcgggt gacttcggtc gcgtccgcct cgtggcggcg
     1441 cccgccgcgc tgctcgtcgc cggggcggcc tggggaccgt gggctacgag gctggcccac
     1501 tcccccgcgg tccggctgtg gctcgggccg gcggtcctgg cggtggccat cgtcggcggc
     1561 ggcatgaccg acctcgcgac gctccagctg ccgcccgcgg cgcccatggt cgccctggcg
     1621 ctcgcgttcg ccgccatgac acccggctac ctcatcgcgg ccggcttcgt gctggggacg
     1681 gcatccctga tcttcctcgc gcacacgttc gccgcgttcg cgccggacgt gacgtcccag
     1741 tccaccgacc gcttcgtggt caacgtggtg gtgaccctgc tcgcgtcgag cggcatggcc
     1801 atcgtcgtcc ggttcgcgac cgaggccgag gcgagggcga accagctcgc ggcgcgcagc
     1861 cgcgagcgac tcgacgtcct ccagcgagtc aacgacatcg tcggacgctt cgacggcacg
     1921 cagccgatcc gatcggtggt ccagggcgtc gtcgacgacg tcgcacgcga cttcgatatc
     1981 gcgctcatct cgatgtacct gcccgatgcc gacgggcggc tgtcgatggt cggcgtcgcc
     2041 ggataccacg aggccttcca cacgatccag ccgggcgtgg gcgtcatcgg gcgggccgcc
     2101 gccagccgcg cgatccagtt cgtccccgac gtcctggccg accccgacta ccgggccgcc
     2161 cgcctggatg ttcgcagcga ggtcgcggtc ccggtggtcc attccggcga gctgctgagc
     2221 atcgtcaact tcgagggcac cgaggatcgg ccgatcggac catcgcaggt cgcgctggcc
     2281 gagatgctgg cgcactcgct ggcgggtgcc ctccgctcgg cacggctgga cgacgagcgt
     2341 cgcgagcgac tccacgcgat cgaacgggtg atggccgtca gccgggcgct ggtggccgat
     2401 ctcgatcggc cgcgcatcgt cgagtcgatc gtcgaggctg ccgttgagct cctcgacgcg
     2461 gacgtcgccg cgctgttctc acgcggcccc gacggcgcct accggctcga ggccgggagc
     2521 gggtttccgc gcgcggccct cggcctcgag gtgccgcccg ggctcgggct gaccaggcgg
     2581 gcgatcctgg agcgcgttcg cacggtcggc gtcaacgagc tggcctcgtg gccggccgaa
     2641 taccgggccg agcggcctgg cggcgagacg ccgcacgcgg ccatggccgt gccgatcctc
     2701 gtggacgggc gggccgcggc ggtcctgctg gtcagccggg tcggcgcgga gcgcacgttc
     2761 agcgagctcg agggcgggat cgccgacctg ctggtcgcac aggtggcgat cgcgctgcac
     2821 aacgccgacc tccacgcccg cgtcgccgaa tcggccctgc gcgacccgct gaccgggctg
     2881 ctcaaccggc gctacttcga cgaggcgatc gagacggcct acgccaccgc ccgacgcagc
     2941 gccggcccgc tgagcctgat cgtgctcgat ctcgatcact tctcggcggt caacaacgag
     3001 cacggacaca gcgcgggcga cgccgtcctg cgccgcgtcg cgcaggcgat ccggaacgcc
     3061 gtccgcgatg gcgacgtggt tgtccgctac ggcggcgagg agttcgtggt gattgcgccc
     3121 ggcaccgacg aggaggtcgc cgtcgagatc gccgagcgga tccgcaacgc ggtcatccgg
     3181 gccggcgagg tgcccgtcga cggacggctg gtcccggtga ccacctcggc cggcgtggcc
     3241 tgcctcgtcg acgagcccga cggacacggg ctgttccgcg ccgccgactc cgcgctcctg
     3301 gtcgccaagc gaggcggccg caaccgggtg gcgcggatct aggctgggga cgggttggcg
     3361 ggcgccgcgc cccgcggcgc gaccctagtc gacgacggtg tggctctgct cgcgcatgaa
     3421 ctgcgccacg tagtacatcg acagcccggc cttgcccgtc gagccgctcc ccttccagcc
     3481 gccgaacgcc tggatccccg gccacgcgcc ggtcgtggcg ccggcccggc ggttcacgta
     3541 gagcaccccc gcctcggcgc gatcgaggaa ctgctggacc tcggccggat cctcgctgta
     3601 cacgccggcg gtcagcccgt agacggagtc gttggccagg gccagcgcct cgtcgagcga
     3661 gtcgaccggg gcaaccgcgg tgagcggcgc gaacagctcg tcccggaaca ggcggtgcga
     3721 ggtcggcagg ttgccgacca ccgtcggctc gacgtagtac ccgcgctcca tgccggcgtc
     3781 gctcaaccgc tcgccgccca cgaagaccgt cccgtcgcga cgcgcctcac tcaccgcggc
     3841 ctggtaccgg tccaccgcgc gctggtcgat gatcggcccc atccagttgg cccgcacgag
     3901 cgggtcgccg atcgtgatcg cctcggtctt ctcgacgagg cggcgaacca gctcgtcgtg
     3961 gaccggccgc tcgacgtaga cccgcgaatt ggcggagcat ttctgcccgc cgaagccgaa
     4021 cgcgctgcgc atgatccctt cggcagcctc gtcgaggtcc gccttgcgcg agacgatcgc
     4081 ggggttcttg ccgcccatct cgacgatgca cggccgcggc cacgtcttgg agaacgagtg
     4141 gaacagccgc atcccgacct c
//
LOCUS       DATDDI010000341         2475 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_590207, whole genome shotgun sequence.
ACCESSION   DATDDI010000341 DATDDI010000000
VERSION     DATDDI010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2475
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590207"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VIU37_04885"
     CDS             <1..703
                     /locus_tag="VIU37_04885"
                     /inference="COORDINATES: protein motif:HMM:NF014212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013314.1"
                     /translation="GLARASGLNIVMGAGWYRNAYYPAETLIDRRSVDDLADELVREA
                     TDGVGQTGIRPGIFGEIGTDKPWLAPAEERVHRAVARAARRTGLAISTHAVMSDVGLA
                     QLRIFDEEGVDPTRVVIGHADSYPVLDHYLEVLRRGASLEFDFLGMSFTPTERHGEDR
                     VVELICELLSRGHADRVLLSQDVCHDSQLKRYEGNGYVYLSETFLPRLRAAGASQDEI
                     DTMTIGNPRRILTIG"
     gene            complement(732..1175)
                     /locus_tag="VIU37_04890"
     CDS             complement(732..1175)
                     /locus_tag="VIU37_04890"
                     /inference="COORDINATES: protein motif:HMM:TIGR03562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family peroxiredoxin"
                     /protein_id="HEY6013315.1"
                     /translation="MAATRRAEASWSGALSTGSGTVTAVSSAAFSSLPVSWAARTEAS
                     DGKTSPEELVAAAHASCYCMALSGNLGRAGTPPERLEVSAEVTFDKLESGWKVVSSAL
                     TVRGWVPGSTPADFAAAAEAARDGCPISQALKGNVALSVVATLES"
     gene            1338..2165
                     /locus_tag="VIU37_04895"
     CDS             1338..2165
                     /locus_tag="VIU37_04895"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEY6013316.1"
                     /translation="MPAWIRRLVPLVLTLAVGLAVAGLSAGPTRAAALSAFDVPTLAL
                     ARADLASLVNEQRAAHGLVALRVDPKATAMAVSRAETMAAMDALGHAGPDGQTVFDAI
                     RASGMTWFGAGEVVAFNTYPGEPESTDRAVADWLASATHASILLSTDYNYVGFGAAVS
                     ATGNRYYAGVFLKLPDRTAGWASAGKVTVTVAGSTQARLTVRWSGGDVRLQVLTAGLR
                     DFEVQRRVAGGTWQSAGITTHTSLTVTVARGKTYEFRVRSRDKAGNRSAWSAVAVRT"
     gene            complement(2155..>2475)
                     /locus_tag="VIU37_04900"
     CDS             complement(2155..>2475)
                     /locus_tag="VIU37_04900"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HEY6013317.1"
                     /translation="WEVYVPLAKRRWGYYVLPILFGDRLVGRIEPRVDRRHGVLRVLD
                     AWWEDGFDPIAEPGFVDAFVDALEAHARFLGASRIHLPRVTRHRALARTVRDRLGSGG
                     RIRS"
BASE COUNT          350 a          893 c          893 g          339 t
ORIGIN      
        1 cgggcttgcc cgggccagcg gcctcaacat cgtcatgggc gccggctggt accggaatgc
       61 gtattacccg gccgagacgc tgatcgatcg ccgctcggtg gacgacctgg cggacgagct
      121 cgttcgggag gcgaccgacg gggtcggcca aaccggcatt cggcccggca tcttcggcga
      181 gatcggcacg gacaagccat ggctggcgcc ggccgaggag cgcgtgcacc gggcggtcgc
      241 ccgggcggcg cgccggacgg gactcgcgat cagcacccac gcggtgatgt cggacgtcgg
      301 tctcgcccag ctccggatct tcgacgagga gggtgtcgat ccgacccggg tggtcatcgg
      361 gcacgccgat tcgtacccgg tcctcgacca ctacctcgaa gtcctccgcc gcggcgcgag
      421 tctcgagttc gacttcctcg gaatgagctt cacgccgacc gagcgccacg gtgaggatcg
      481 ggtggtcgag ctgatctgcg agctcctgtc gcgcgggcac gcggaccggg tcctgctcag
      541 ccaggacgtc tgccacgact cgcagctcaa gcgctacgag ggcaacggct acgtctacct
      601 gtccgagacc ttcctgcctc gactccgcgc ggccggcgcg tcgcaggacg agatcgacac
      661 gatgacgatc ggcaatccgc ggcggatcct gacgatcggg tagtgcgctc cgcgaagcgc
      721 cgggcagtgc gtcagctctc gagggtcgcg accacgctga gcgcgacgtt gcccttgagc
      781 gcctggctga tggggcatcc gtcccgggcg gcttcggcgg cggcggcgaa gtccgccggt
      841 gtcgagccgg ggacccaacc gcgcaccgtc agcgcactgg agacgacctt ccagccgctc
      901 tcgagcttgt cgaaggtgac ctcggcagag acctcgagcc gctcgggcgg cgttcctgcg
      961 cggcccaggt tcccggacag ggccatgcag tagcacgagg cgtgggcggc ggcgaccagc
     1021 tcctcgggac tcgtcttccc gtcggaggcc tcggtccgcg cggcccacga cacaggcagg
     1081 ctggagaacg cggccgacga gaccgcggtg acggtcccgg agccggtgct gagggcgccg
     1141 gaccagctgg cctcggcgcg tcgggtggcg gccatgcgta cctcctcgcg atggtggggg
     1201 tgcatatcct cccacggttg ccggcacggg tcccgctcag ctggtgacct gtggcggtcg
     1261 cgccagtacc aacgacccct cgatgacgtg accggcagcc cataggaacc ggccgccgcg
     1321 ggccgcacga tgccgaggtg cctgcctgga tccgccgcct cgtccctctc gtcctgaccc
     1381 tcgcggtcgg gctggccgtc gccggcctgt cggccggtcc cacccgggcc gccgccctgt
     1441 cggccttcga cgtgccgacg ctcgcgctcg cgcgggcgga cctcgcgtcg ctggtcaacg
     1501 aacagcgggc cgcccacggg ctcgtcgcgc tccgggtcga cccgaaggcg accgcgatgg
     1561 cggtcagccg ggccgagacg atggccgcga tggacgccct cggccatgcc ggtccggacg
     1621 ggcagaccgt cttcgatgcg atccgcgcat ccgggatgac ctggttcggc gccggcgagg
     1681 tggtcgcctt caacacgtac ccgggcgagc cggaatccac ggaccgggcc gtggccgact
     1741 ggctggcgtc cgcgacgcac gcatcgatcc tgctgtcgac cgactacaac tacgtcgggt
     1801 tcggggcagc cgtctcggcg accgggaacc gatactacgc cggggtcttc ctcaagctcc
     1861 cggaccgcac ggccggctgg gcgagcgccg ggaaggtgac ggtgaccgtc gccggcagca
     1921 cccaggcgcg cctgacggtc cgctggtccg gcggcgacgt tcgcctgcag gtgctgaccg
     1981 ccggcctccg cgacttcgag gtccagcgcc gggtggccgg cggcacgtgg cagtcggccg
     2041 ggatcaccac gcacaccagc ctgacggtga ccgtggcccg cggcaagacg tacgagttcc
     2101 gggtccggtc gcgcgacaag gccggcaatc ggagcgcctg gagcgcggtc gccgtcagga
     2161 cctgatccgg ccgccactcc cgagccgatc gcggaccgtc ctcgcgagcg cgcgatgccg
     2221 ggtgacccgc ggcaggtgga tccgggaggc gcccaggaac cgcgcgtgcg cttcgagcgc
     2281 gtcgacgaat gcgtcgacga acccgggctc tgcgatcgga tcgaagccgt cctcccacca
     2341 ggcgtcgagg acacgcagga cgccgtggcg gcgatccacc cgcggttcga tccgcccgac
     2401 caaccggtcg ccgaacagga tcggcaggac gtagtagccc cagcggcgct tcgcgagcgg
     2461 gacgtacacc tccca
//
LOCUS       DATDDI010000342         1630 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_590264, whole genome shotgun sequence.
ACCESSION   DATDDI010000342 DATDDI010000000
VERSION     DATDDI010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590264"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1430)
                     /locus_tag="VIU37_04905"
     CDS             complement(<1..1430)
                     /locus_tag="VIU37_04905"
                     /inference="COORDINATES: protein motif:HMM:TIGR01494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEY6013318.1"
                     /translation="MHATPGHAGHGNPAATHDRHAGHSVAMFRDRFWLSLALTIPVLV
                     WSSDPQAWLGYVAPSFPGSDLLPAILGTAVFAYGGLVFLRGARGELADRRPGMMTLIS
                     LAIVVAFVTSWAGSLDLFDVEIWWELATLITIMLLGHWLEMRSIAQARGALDALAALL
                     PDTAERVHGDRSERVRLADLAVGDLVLVRPGARVPADGIVDDGAADVDESMITGESRS
                     IAKGPGDPVVAGTVASGGSLRVRVTAVGDATALSGIMRLVAAAQASASRAQALADRAA
                     AVLFYVALAAAIVTLGFWWLQGDREAALVRTATVLVIACPHALGLAIPLVIAISTSLG
                     ARNGLLIKDRLALERAREIDLVIFDKTGTLTVGRPVLAAVSAADGGGERELLQLAASV
                     EADSEHPLARAIVAAAAARGIEPLAVAGFEALAGRGTRATVGGRAVAVGGPRLLADLG
                     LAPVPAAEGWSRDGRTVLHVVADGRV"
     gene            complement(1430..>1630)
                     /locus_tag="VIU37_04910"
     CDS             complement(1430..>1630)
                     /locus_tag="VIU37_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002485948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013319.1"
                     /translation="RATMRNVRQNLFWAFAYNTILIPVAMGVLYPFTGILLDPILAAG
                     AMALSSVTVVSNALRLRGYRPA"
BASE COUNT          250 a          589 c          611 g          180 t
ORIGIN      
        1 atgacccgac cgtccgccac gacgtgcagg acggtccggc cgtcccgcga ccagccctcg
       61 gccgccggga ccggggcgag cccgaggtcg gccaggagcc gtggaccgcc gaccgcgacg
      121 gcgcgaccgc cgaccgtcgc acgcgtccct cggccggcga gcgcctcgaa cccggcgacc
      181 gccagcggtt cgatgccgcg cgccgcggcg gccgcgacga tggcacgcgc cagcggatgc
      241 tcggaatcgg cctcgaccga cgccgcgagc tggagcagct cgcgctcgcc gccgccgtcc
      301 gccgcggaca ctgccgccag gacaggccgc cccacggtga gcgtcccggt cttgtcgaag
      361 atgacgaggt cgatctcgcg ggcgcgctcg agcgccagtc ggtccttgat caggagcccg
      421 ttcctcgcgc ccagcgacgt cgagatcgcg atcaccagcg ggatcgcgag gccgagcgcg
      481 tgcgggcagg cgatgacgag gaccgtggcg gttcggacca atgcggcttc gcggtcgccc
      541 tggagccacc agaacccaag ggtgacgatg gccgccgcga gcgccacgta gaacagcacg
      601 gctgccgcgc gatccgcgag ggcctgggcg cgcgacgccg acgcctgggc cgcggcgacc
      661 agccgcatga tccccgacag cgcggtggcg tcgccgacgg cggtgacgcg gacgcgcagg
      721 ctgccgcccg acgcgaccgt cccggcgacc acgggatcgc cggggccctt ggcgatcgag
      781 cgggactcgc cggtgatcat cgactcgtcc acgtcagcgg cgccgtcgtc gacgatgccg
      841 tctgcaggca cgcgcgcgcc gggccggacg agcaccaggt cccccacggc caggtcggcg
      901 agtcggaccc gttccgacct gtcgccgtgg acccgttcgg cggtatcggg gagcagtgcc
      961 gcgagggcat cgagcgcgcc gcgcgcctgg gcgatcgagc gcatctcgag ccagtgcccg
     1021 aggagcatga tcgtgatcag ggtcgccagc tcccaccaga tctcgacgtc gaacaggtcg
     1081 aggcttccgg cccagctggt cacgaaggcg acgacgatcg ccaggctgat cagcgtcatc
     1141 atcccgggcc ggcggtccgc cagctcgcca cgcgcgccgc ggaggaagac gagcccgccg
     1201 taggcgaaga ccgcggtccc gaggatggcc ggcagcaggt ccgagccggg gaacgacggt
     1261 gccacgtagc cgagccacgc ctgcgggtcg gagctccaga cgaggacggg gatcgtcagg
     1321 gcaagcgaca gccagaaccg gtcgcggaac atcgcgaccg agtggcccgc gtgccggtcg
     1381 tgggtggcgg cggggttgcc gtggccggcg tgcccgggag ttgcgtgcat caggccggcc
     1441 ggtagccgcg cagccggagg gcgttcgaca cgacggtcac cgacgagagc gccatcgccc
     1501 ccgcggccag gatcgggtcg agcaggatcc cggtgaacgg atagaggacg cccatcgcca
     1561 ccgggatcag gatggtgttg tacgcgaacg cccagaacag gttctggcgg acgttgcgca
     1621 tcgtcgccct
//
LOCUS       DATDDI010000343         3672 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_611107, whole genome shotgun sequence.
ACCESSION   DATDDI010000343 DATDDI010000000
VERSION     DATDDI010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3672
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611107"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VIU37_04915"
     CDS             <1..321
                     /locus_tag="VIU37_04915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013320.1"
                     /translation="GWTAVPVSAHPATPATLTFHFTACTGPSGTPAAFDAVKQPSSAA
                     ALHLVDGSGIFVAVSAVDVASGATLFATPGFQHNAVATVACRLIHPVSGTLQAVVGML
                     APDH"
     gene            complement(318..2000)
                     /locus_tag="VIU37_04920"
     CDS             complement(318..2000)
                     /locus_tag="VIU37_04920"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HEY6013321.1"
                     /translation="MLRGIRLRLVEETIGAFDPKLDVKNAADVRAKIEGIVDRVLAVN
                     EFAVTRDERIRLVEEMIDEVTGLGPLEPLLMDDSITEVMVNGPDHVYIERGGKIVRVE
                     AAFQSNEHVRRIIDRIITPIGRRIDESSPRVDARLPDGSRVNCVIPPLSLVGPVITIR
                     KFSAKPYTVEDLIRFGTATADMFEFIRVCVEARLNIFVSGGTGSGKTTTLNVLSSFIP
                     NDDRIVTIEDAAELQLRQEHVVTLESRPPNLEGEGEITMRHLLRNALHMRPDRIIVGE
                     CRAGEALDMIQAMTTGQAGSLSTGHANSPRDMLRRLETMVLMTGYELPLRAIREQIAS
                     AVDLIVHTARLKDGSRKIVNITEVYGMEDDEILTQDIFTFEQTAYRDGKIEGELKPTG
                     IRPTFMRRFRTGGIALPPGEFGIPPEDPSKPGPLGKDKGGMLTGEGIQTDAPVVPVGM
                     GRAVTAGGMVYVSSIGPIDPETGRVVSAAIKEQTRQCMHNLKARLEAAGSSMDKIVWA
                     NWSLRDATEFDLFNEEWVRWFPGEAPVGQGTLMPPLQRRAGFRISIGVIAEA"
     gene            2374..3570
                     /locus_tag="VIU37_04925"
     CDS             2374..3570
                     /locus_tag="VIU37_04925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013322.1"
                     /translation="MPSLLIACLVAGLTLVAGPIGSARSATVFTTFTGARAFPELGGP
                     PEVLSIDAATALPPAGTGTYTTLRDLFVSEDHPNEFDPLVDGSVPFDGTGFHVPAPAP
                     FAFLPGSGTVSVVGLNDRSIACGSLRADLSVSTTSIDVAFHRLDAVNPCTIIVSGVQI
                     VPTASSPLVPLVLLTATSTGPGLSGAVGALALTSGQGAPSTISLAASPQVITWGGGTT
                     LTARLGPNGAGLPLRLEQSFDGHSAWTAATVVTTDSRGIVTYAMRPRFNRFYRFAFVG
                     GGGLAAGVSNAVRVPVRFKATLSPLHSTVTTVRRGTVVTFTVTAQPVVPYNQLPYIEF
                     RLYHRSPSGWRIAATKVLTADARGHASWRRTFAVAGDWYVRARAEPTFSNSYSVLTPP
                     ARYRVR"
BASE COUNT          488 a         1326 c         1241 g          617 t
ORIGIN      
        1 ggctggacgg ccgttcccgt ctccgcccac cccgcgacgc cggccacgct gaccttccac
       61 ttcacggcct gcacggggcc ctccgggaca ccagcggcgt tcgacgcggt caagcagccc
      121 agcagcgcgg cggccctcca cctcgttgac ggcagcggga tcttcgtggc ggtctcggcc
      181 gtcgatgtcg ccagcggcgc gaccctgttc gccacgcccg ggttccagca caacgccgtc
      241 gcgacggtgg cgtgccggct gatccatccg gtgagcggga cgctgcaggc cgtcgtaggg
      301 atgctcgccc ccgaccacta ggcctcggcg atcaccccga tcgagatgcg aaagccggcg
      361 cggcgctgga gcggcggcat cagcgtgccc tggccgaccg gcgcctcgcc ggggaaccag
      421 cgcacccact cctcgttgaa caggtcgaac tccgtggcgt cccgcagcga ccagttggcc
      481 cacacgatct tgtccatgga actccccgcg gcctccagcc tggccttgag gttgtgcatg
      541 cactggcgcg tctgctcctt gatcgccgcg ctgaccaccc ggcccgtctc agggtcgatc
      601 gggccgatcg acgagacgta gaccatgccg ccggcggtca ccgcccggcc catcccgacc
      661 gggaccacgg gcgcgtccgt ctggatcccc tcgccggtca gcatgccgcc cttgtccttg
      721 cccagcgggc cgggcttgct cgggtcctcg ggcgggatcc cgaactcgcc gggcggcagc
      781 gcgatgccgc cggtcctgaa ccggcgcatg aaggtcgggc ggatgccggt cggcttgagc
      841 tcgccctcga tcttgccgtc gcgataggcg gtctgctcga aggtgaagat gtcctgggtg
      901 aggatctcgt cgtcctccat cccgtagacc tcggtgatgt tgacgatctt ccgggagccg
      961 tccttgagcc gggcggtatg gacgatcagg tcgacagccg acgcgatctg ctcgcggatc
     1021 gcccgcagcg ggagctcgta gccggtcatc agcaccatcg tctcgagccg tcggagcatg
     1081 tcgcgggggc tgttggcatg gccggtcgac agcgaccctg cctggccggt ggtcatggcc
     1141 tggatcatgt cgagcgcctc gccggcgcgg cactcgccga cgatgatccg gtcggggcgc
     1201 atgtggaggg cgttgcggag caggtggcgc atcgtgatct cgccctcgcc ctcgaggttc
     1261 ggcgggcggg attcgagcgt caccacgtgc tcctggcgga gctgcagctc cgccgcatcc
     1321 tcgatcgtga cgatcctgtc gtcgttgggg atgaacgagg acagcacgtt gagcgtcgtc
     1381 gtcttgcccg agccggtgcc gcccgagacg aagatgttga gtcgtgcctc gacgcagaca
     1441 cggatgaact cgaacatgtc ggccgtggcg gtgccgaacc ggatcaggtc ctcgaccgtg
     1501 tatggcttgg ccgagaactt gcggatcgtg atcaccgggc cgaccagcga caggggcggg
     1561 atcacgcagt tgacccgcga gccgtcgggc aggcgggcat ccacgcgcgg gctggactcg
     1621 tcgatccgcc gcccgatcgg ggtgatgatc cggtcgatga tccgccggac gtgctcgttg
     1681 ctctggaacg cggcctcgac gcggacgatc ttgccgcctc gctcgatgta gacgtggtcc
     1741 ggtccgttga ccatgacctc ggtgatcgaa tcgtccatca gcagcggttc gagcggcccg
     1801 agaccggtca cctcgtcgat catctcctcg accaggcgga tccgttcgtc gcgggtcacg
     1861 gcgaactcgt tcacggccag tacccggtcg acgatcccct cgatcttggc gcgaacgtcg
     1921 gcagcgttct tgacgtcgag cttcggatcg aaggcgccga tcgtctcttc caccagccgc
     1981 agccggatgc cgcggagcat ctcctcgcgg gccgggttgc gaggcgcatc gggacgtgcc
     2041 ggaaccagcg cgcggtccgg actcgacgtc cgggtgcgcc cgcccgcctc ggccttctcc
     2101 gcgttctcgg cttggtgttg cgccctctcg acccgttggc tcagggacac gggcaatacc
     2161 ccggcagcaa agcgattggt ctggcgcgat tatcgcccca gatgcgccaa agcgacgttg
     2221 ggctcggtat accgtgccag tcaagaggct gaggtcggga acggcccgtg ttgccgctgc
     2281 aaggtctcga tccggcggtt ggagtagggt cggagcgaga tggggatccg acctcgacct
     2341 tccggtcccg ccgccgccct cctccgatcg agcgtgccgt cgctcctgat cgcctgcctc
     2401 gtggccggtc tcaccctcgt cgcgggtccg atcgggagcg cccgatcggc gacggtcttc
     2461 accacgttca cgggggcccg cgccttcccg gagctcggcg gtccacccga ggtcctgtcg
     2521 atcgacgcgg cgacggccct gccgcccgcc ggaaccggga cgtacacgac gctcagggat
     2581 ctcttcgtga gcgaggatca ccccaacgag ttcgacccgc tcgtggacgg cagcgtgccg
     2641 ttcgacggga cgggcttcca tgtcccggca ccggccccgt tcgccttcct gcccggatcc
     2701 ggaaccgtgt cggtcgtcgg cctgaacgac cggtcgatcg cgtgcggcag cctgcgcgcc
     2761 gatctgtcgg tgtcgaccac gtcgatcgac gtcgccttcc accgcctgga cgccgtcaat
     2821 ccgtgcacca tcatcgtcag cggggtgcag atcgtcccga ctgcttcgtc cccgctcgtt
     2881 ccgttggtgc tcctgaccgc tacgagcacg gggcccgggc tgagcggagc cgtcggcgcg
     2941 ctggcgctga cgagcggcca gggagcgcct tcgaccatct ccctggccgc ctcgccgcag
     3001 gtgatcacct ggggtggcgg cacgaccctg accgcacgcc tgggcccgaa tggcgccggc
     3061 ctgccgttgc gcctcgagca gagcttcgac ggtcattcgg cgtggacggc cgcaacggtc
     3121 gtgaccaccg attctcgcgg catcgtgacc tacgcgatgc ggccccgttt caaccggttc
     3181 taccggttcg cgttcgtcgg cggcggcggg ctggcagccg gcgtcagcaa cgcggtccgc
     3241 gtaccggtgc ggttcaaggc gacgctctcg ccgctccact cgaccgtgac caccgtccgg
     3301 cgcggcacgg tcgtcacgtt caccgtcacg gcccagccgg tggttccgta caaccagctg
     3361 ccctatatcg agttccgcct ctaccatcgc tcgccgtccg gctggcggat cgccgcgacc
     3421 aaggtcctga ccgccgacgc gcgcggccac gccagctggc gacgcacgtt cgccgtggcc
     3481 ggggactggt atgtccgcgc ccgggcggag ccgaccttct cgaactccta cagcgtgctg
     3541 acgccgcccg cgcgataccg cgttcgctga cgcccgcgcc gccgtggtcg ggccgttgcg
     3601 cgaccgccca gtgcgaggac ccgtcctgac ctgacccgaa ggcaggcccg ccgggccgcc
     3661 gcgtgtgttc cc
//
LOCUS       DATDDI010000344         3118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_465250, whole genome shotgun sequence.
ACCESSION   DATDDI010000344 DATDDI010000000
VERSION     DATDDI010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3118
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465250"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1076)
                     /locus_tag="VIU37_04930"
     CDS             complement(<1..1076)
                     /locus_tag="VIU37_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013323.1"
                     /translation="MYYVARGSIPQQRHTQHRAPDGSLYAEELFGVEGFTGRSSLLYH
                     LVPPTRTHRIEAVRRIELEAADDGLHRHRLTKTGGLEPTGDAISGRIPLYFNRDVVFG
                     VVRPAESMPEGQFYRNGVADEMLFVHEGTGVCDTLFGPLRYGPGDYLVLPIGTTWRLE
                     PDPGSEQRMLYLEAPSEIEPPKRYRNEYGQLLEHSPYGQRDLHAPPFAEPRAEAGEFV
                     IHVRSADRITAYHYRHHPFDVVGWDGYLWPFRFNIGDFQPITGRVHQPPPVHQTFQAR
                     HFVLCSFVPRKFDYHPLAIPAPYNLSNINSDEVIYYVAGNFMSRRGVDIASFTLHPAG
                     IPHGPHPGTAEASIGKEATEELAV"
     gene            1339..1518
                     /locus_tag="VIU37_04935"
     CDS             1339..1518
                     /locus_tag="VIU37_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013324.1"
                     /translation="MASEIDILTAGRLHQAELLEEAALRRLLRTAGPRRDEPVSGGRR
                     LQTLLRRIAGAPSVA"
     gene            1564..>3118
                     /locus_tag="VIU37_04940"
     CDS             1564..>3118
                     /locus_tag="VIU37_04940"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6013325.1"
                     /translation="MATRVSSPLFIGRQTELGILTEAVDRAAAGMASTILIGGDAGIG
                     KTRLVTELAAHASAAGALVLEGGCVALGDGGGLPFAPIVEALRRLPSILAREPDGALG
                     VADLRSPATAELGRLIPELGASSGADVATFDRPEWIQARIFEGLLTLLRLLSEHRPVV
                     LILEDLHWADGSTRDVTSFLARNARAERLLVIGTYRTDELNRRHPLRPWLSEMERLPR
                     VTGIELSRFGRAELDAQVAAILDHAPPPGLVDNVERRTEGNPFFVEELLAASAGQPRD
                     RLPQTLRDVLLTRVTSLSEEAQRVLGIAAVAGRRVRTELLSAVAGMPETELEAALREA
                     LASQIIVTDTSMGVDAYRFRHALLAEAVYDDLLPSERRRLHAAYAAVLESQPVRGGAE
                     GASLLSALAHHASAAHEPTRALRAWIGAARAAEAAFAFPVSMNAYERAIDLWDAVPAD
                     DRPRGIDAAALHFEASLAANLTGRSERAVEFARMAVSLIDRRSDVERWAAANERLARV
                     SWVSGSMDEG"
BASE COUNT          438 a         1114 c         1111 g          455 t
ORIGIN      
        1 atgaccgcaa gctcctcggt cgcctccttg ccgatggacg cctccgcggt ccccggatgc
       61 ggaccgtgcg ggatcccggc ggggtggagc gtgaacgagg cgatgtccac gccgcgccgg
      121 ctcatgaagt tgccggccac gtagtagatg acttcgtcgc tgttgatgtt cgagaggttg
      181 tacggcgccg ggatggccag tgggtggtag tcgaacttgc gcggcacgaa cgagcagagc
      241 acgaagtggc gggcctggaa cgtctggtgg accggcggcg gctggtggac gcgtccggtg
      301 atcggctgga agtcgccgat gttgaagcgg aacggccaga ggtagccgtc ccagccgacc
      361 acgtcgaacg ggtggtggcg gtagtggtag gccgtgatcc ggtcggccga gcggacgtgg
      421 atgacgaact cgcccgcctc ggcgcgcggc tcggcgaacg gcggcgcatg gaggtcacgc
      481 tggccgtacg gcgaatgctc gagcagctgt ccgtactcgt tccgatagcg cttcgggggc
      541 tcgatctccg acggtgcctc caggtagagc atccgctgtt ccgatcccgg gtccggttcg
      601 agccgccatg tcgtcccgat cggcaggacg aggtagtcgc cagggccgta gcgaagcggc
      661 ccgaagagcg tgtcacagac cccggtcccc tcgtggacga agagcatctc gtcggcgacg
      721 ccgttgcggt agaactgccc ctccggcatg gactcggccg ggcggacgac cccgaacacc
      781 acgtcgcggt tgaagtagag cgggatccgt cccgagatcg cgtcgccggt cggttcgagc
      841 ccgcccgtct tggtcagccg atggcgatgg agcccgtcgt cggcggcctc gagctcgatc
      901 cggcggaccg cttcgatgcg atgcgtccgc gtcggcggga cgaggtggta cagcagcgag
      961 ctgcgtccgg tgaacccctc cacgccgaac agctcctcgg cgtagaggct gccatcgggg
     1021 gcgcggtgct gcgtgtggcg ctgctggggg atgctgccgc gggcgacgta gtacatgcga
     1081 cctggcctcc tcgatcgaag ggccagtcta gccgcgtgct cgccacggag gaatcgggcg
     1141 tccatcgcga cccgcggtcc taacggagcg atcgggacct aaaggcgtca tcggcctctc
     1201 gtgcccccga aataacggcg gcttcggccc caggatgacg aggtcgcccg atggcagggg
     1261 cgcctcccga ctctacggtg gaccccatca cgagatcgaa cgaatgactc gatcgcaagg
     1321 cggaagggga ccactccgat ggcatccgaa atcgacatcc tgacagccgg ccggcttcac
     1381 caggccgagc tcctcgagga ggccgcgctc cgccggctgc tccggaccgc cgggccgcgg
     1441 cgcgacgaac cggtctccgg cggccgccgc ctgcagacgc tcctgcgccg cattgccggc
     1501 gccccatccg tcgcctgacc tgcccggatc ggacggggag cgccctcccg taccatggac
     1561 ggcgtggcca cgcgcgtctc cagccccctg ttcatcggcc ggcagacgga gctcgggatc
     1621 ctgaccgaag ccgtcgaccg agccgccgcc gggatggcct ccaccatcct catcggcggt
     1681 gacgccggga tcggcaagac ccggctcgtc acggagctcg ccgctcacgc gtcggcggcc
     1741 ggagccctcg tcctggaagg cggttgcgtg gccctgggcg atggcggcgg gctgccgttc
     1801 gccccgatcg tcgaagccct ccggcgcctg ccctcgatcc tcgcacggga acccgatggc
     1861 gccctcggcg tcgcggacct ccgctccccc gccaccgccg agctcgggcg cctgatcccg
     1921 gagctgggcg cgtcgagcgg cgcggacgtc gccacgttcg atcggccgga gtggatccag
     1981 gcacgcatct tcgagggact cctcaccctg ctgcgcctgc tcagcgagca ccgaccggtc
     2041 gtcctgatcc tggaggacct ccactgggcc gatggctcga cccgcgacgt gacgtcgttc
     2101 ctggcgcgaa acgcgcgtgc agagcgcctg ctggtgatcg gcacgtatcg aaccgacgag
     2161 ctgaaccgcc gtcatccgct gcgcccctgg ctgtccgaga tggagcgcct gccacgcgtc
     2221 accgggatcg agctgtcacg gttcggccgc gccgaactgg acgcgcaggt cgccgcgatc
     2281 ctcgaccacg cgccgccgcc cgggctggtc gacaacgtcg agcgccgcac ggaaggcaat
     2341 ccgttcttcg tcgaggagct cctggcggcg agcgccggcc agccgcggga ccgcctgccg
     2401 cagacgctgc gcgacgtgct gctgacccgg gtcaccagcc tgtccgagga ggcgcagcgg
     2461 gtcctgggca tcgccgccgt cgccggtcgt cgcgtgcgaa ccgagctcct ctccgcggtg
     2521 gccggcatgc cggagaccga gctcgaggcc gcccttcgcg aggcgctcgc cagccagatc
     2581 atcgtgaccg acacgtcgat gggcgtcgac gcctatcgct tccggcatgc cctgctcgcc
     2641 gaagccgtgt acgacgacct cctgccctcc gaacgccggc ggttgcacgc cgcctacgcc
     2701 gccgtcctcg agtcgcagcc cgtacgggga ggagccgagg gcgcgagcct cctgtcggcg
     2761 ttggcccacc atgcgtcggc ggcccacgag cccacgcgcg ccctccgcgc ctggatcggc
     2821 gccgcccgcg ccgccgaggc ggcgttcgcc ttcccggtgt cgatgaacgc gtacgagcgg
     2881 gcgatcgacc tgtgggacgc cgtcccggcc gatgaccgcc cccgcgggat cgacgcggcg
     2941 gcgctccatt tcgaggcaag cctggcggcc aatctgaccg gtcggtccga gcgcgccgtc
     3001 gagttcgcac ggatggccgt gagcctgatc gaccgccgga gcgacgtcga gcgctgggcc
     3061 gcggccaacg agcgcctggc ccgggtgtcg tgggtctcgg gttcgatgga cgagggcc
//
LOCUS       DATDDI010000345         2797 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_569360, whole genome shotgun sequence.
ACCESSION   DATDDI010000345 DATDDI010000000
VERSION     DATDDI010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569360"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..984)
                     /locus_tag="VIU37_04945"
     CDS             complement(106..984)
                     /locus_tag="VIU37_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013326.1"
                     /translation="MLFRRRSSLTSSRAAALARVLRAPTFELVPLKNALDQAAFLPPG
                     STVSVTVSPTKGIEATVALAEQLQARGFRAVPHLSARMVRDRAHLAELIAWLEGAGVD
                     RAFVVGGDAKEPGDFPDGLSLLRAMAEIGHPLREIGIPAYPQGHAFIADGALLEALRA
                     KVPFASYMTTQLCFDPAAIGTWLAARRAEGIGLPVHLGVPGVAEPQRLLAISARIGVA
                     DTHRFLVKNTRFIARLIRSGGFYRPDGLLEGLAPTAADPAAGIADLHLYTFNAVGLTE
                     RWRKDYLAKLAVRAGG"
     gene            complement(991..2529)
                     /locus_tag="VIU37_04950"
     CDS             complement(991..2529)
                     /locus_tag="VIU37_04950"
                     /inference="COORDINATES: protein motif:HMM:NF018012.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine methyltransferase family protein"
                     /protein_id="HEY6013327.1"
                     /translation="MVETQRHRSGGRAARQALRLATHAEHVPFLTRRLAPFEVLGEEG
                     LAQIEDNADTILQEVGLEFRGDEAALRLLREAGADVDGVRVRFPRGMCRSIVQATAPR
                     QFTQYARNEARNVEIGGLHTVFAPNYGSPFVRDLDRGRRYGTIEDFRNFVKLAYASPN
                     MHHSGGTICEPVDVPVNKRHLDMVYSHIRYSDKPFMGSVTAPDRARDTVEMARITFGA
                     DYLETHPVVLSLINANSPLVWDATMLGAARAYAEANQATLITPFILAGAMAPVTAAGV
                     CAQTLAEALGGMAFVQLVRPGAPVVLGSFASSMSMQSGAPTFGTPEPALVLYVMAALA
                     RRLGVPFRSGGSLCASKIADAQAAYESAATLQPTILAGVNFVLHAAGWLEGGLAVGYE
                     KFILDADQCGMMAVFVNGVDMTPNGQALDAILANPPGQHYLGNAHTLANFESAFYRSE
                     IADNNSFEQWQEDGSLDAARRANAIWKRMLAEYEAPPIDPAVDEALLEFIARRKASMP
                     DSEV"
     gene            complement(2529..>2797)
                     /locus_tag="VIU37_04955"
     CDS             complement(2529..>2797)
                     /locus_tag="VIU37_04955"
                     /inference="COORDINATES: protein motif:HMM:NF025925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ASKHA domain-containing protein"
                     /protein_id="HEY6013328.1"
                     /translation="LSGAARTEIEGVVRRVEKIETAVEPRFQEHFVEAMALPHRTAPF
                     PNLARVVALPERVAGAGTNGSEARNERRRRRVVGAGSGGGREVG"
BASE COUNT          391 a         1005 c         1017 g          384 t
ORIGIN      
        1 ggtggctcca cgcggctggg tggcgtacgg gggcggcctg cgtgaccggg ccggcgccgc
       61 ccggaccggc tgcgatgcca tggccccggc ggctggcaca cggcctcagc cgccggcgcg
      121 gaccgccagc ttcgccaggt agtccttccg ccaccgctcg gtcagtccga cggcgttgaa
      181 ggtgtacagg tgaaggtccg cgatcccggc cgccgggtcg gcagccgtcg gcgccagccc
      241 ttcgagcagc ccgtctggcc ggtagaagcc gcccgaccgg atcaggcgag cgatgaaccg
      301 cgtgttcttg acgaggaacc gatgcgtgtc ggccaccccg atccgggcgc tgatcgccag
      361 cagccgctgc ggttcggcca cacccggcac cccgaggtgc accgggagcc cgatgccctc
      421 cgcgcggcgc gccgccagcc acgtcccgat cgcggccggg tcgaagcaga gctgggtggt
      481 catgtagctc gcgaacggga ccttggcgcg gagcgcctcg agcagcgcgc cgtcggcgat
      541 gaacgcgtga ccctgcgggt aggccgggat cccgatctcg cgcagcgggt gcccgatctc
      601 ggccatcgct cgaagcagcg acagtccgtc gggaaagtcg ccgggttcct tggcgtcacc
      661 gccgacgacg aaggcccggt ccacgccggc gccctccagc caggcgatca gctccgccag
      721 gtgggcgcgg tcgcggacca tgcgcgcgga caggtgcggc acggcccgaa atccgcgagc
      781 ctggagctgc tcggcgaggg ccaccgtcgc ctcgatcccc ttggtcggcg agaccgtcac
      841 cgacaccgtc gagcccggcg gcaggaacgc cgcctggtcg agcgcgttct tgagcggcac
      901 gagctcgaag gtcggcgcgc gcaggacccg ggcgagcgcc gcggcgcgcg acgacgtcag
      961 cgacgagcga cggcggaaga gcacgcgacg tcagacttcg gaatcgggca tcgacgcctt
     1021 tcggcgcgcg atgaactcga gcagcgcctc gtcgacggcg ggatcgatcg gcggcgcctc
     1081 gtactcggcc agcatccgct tccagatcgc gttggcacgc cgggcggcgt cgagcgagcc
     1141 gtcctcctgc cactgctcga agctgttgtt gtcggcgatc tcgctgcggt agaaggcgct
     1201 ctcgaagttg gccagggtgt gcgcgttgcc caggtagtgc tgtccgggcg ggttggccag
     1261 gatcgcgtcg agcgcctggc cgttcggcgt catgtccacg ccgttgacga agacggccat
     1321 catcccgcac tggtcggcgt cgaggatgaa cttctcgtag cccacggcga gcccgccctc
     1381 gagccagccc gccgcatgga gcacgaaatt gacgccggcg aggatcgtcg gctggagcgt
     1441 ggcggccgac tcgtaggccg cctgggcgtc ggcgatcttc gacgcgcaca gcgagccgcc
     1501 cgatcggaac gggacgccca ggcgccgggc cagcgccgcc atgacgtaga ggacgagtgc
     1561 cggttccggc gtgccgaagg tcggcgcccc cgactgcatc gacatcgagc tggcgaacga
     1621 tccgaggacc accggcgcac ccggacgcac cagctggacg aaggccatcc cgccgagcgc
     1681 ctcggcaagg gtctgggcgc agacgccggc ggccgtgacc ggggccatcg cgccggccag
     1741 gatgaacggc gtgatcagcg tggcctggtt ggcctcggcg taggcgcgcg ccgcgccgag
     1801 catcgtggcg tcccagacca gcggcgagtt cgcgttgatc aggctgagga cgaccgggtg
     1861 cgtctcgagg tagtcggcgc cgaacgtgat ccgcgccatc tcgacggtgt cgcgcgcccg
     1921 gtccggcgcc gtgacggagc ccatgaacgg cttgtcgctg taccggatgt gcgagtagac
     1981 catgtcgagg tggcgcttgt tgaccggcac gtcgaccggc tcgcagatcg tcccgcccga
     2041 gtggtgcatg ttcggcgacg cgtaggccag cttcacgaag ttgcggaagt cctcgatcgt
     2101 gccgtagcgc cgtccgcggt ccaggtcgcg cacgaacgga gagccgtagt tgggggcgaa
     2161 gaccgtgtgc agcccgccga tctcgacgtt gcgtgcctcg ttccgcgcgt actgggtgaa
     2221 ctggcggggt gcggtcgcct ggacgatcga gcggcacatc ccgcggggga agcggacgcg
     2281 gacaccgtcg acgtcggcgc cggcctcgcg caacagccgg agcgcggcct cgtcgccccg
     2341 gaactcgagc ccgacctcct ggaggatggt gtcggcgttg tcctcgatct gggcgagccc
     2401 ctcctcgccc aggacctcga acggagcgag cctgcgggtc aggaacggca cgtgctcggc
     2461 atgggtcgcc aaccggagcg cctgccgggc cgctcgcccc ccgctccgat gtcgctgcgt
     2521 ctcgaccatc agccgacctc cctgccgccg ccgctgccgg cgcccaccac gcgccgccgt
     2581 cgccgctcgt tgcgcgcctc ggatccgttc gtcccggcgc cggcgacccg ctcgggtagg
     2641 gccacgaccc gggccaggtt ggggaacggc gcggtccggt gcggcaacgc catggcctcc
     2701 acgaagtgct cctggaagcg cggctccacc gcggtctcga tcttctcgac ccggcgcacc
     2761 acgccctcga tctcggtccg cgccgccccc gacagca
//
LOCUS       DATDDI010000346         1765 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_673448, whole genome shotgun sequence.
ACCESSION   DATDDI010000346 DATDDI010000000
VERSION     DATDDI010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673448"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..652)
                     /gene="hemC"
                     /locus_tag="VIU37_04960"
     CDS             complement(95..652)
                     /gene="hemC"
                     /locus_tag="VIU37_04960"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:NF013538.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEY6013329.1"
                     /translation="MTGRQVVIGTRGSRLAMAQAGLVAEALERSGCTTRISIIETAGD
                     RRAPDTAWGEGAFMAAIERALLAGDVDVAVHSAKDVPTDEDRRLRIGAYLPRADPRDA
                     LVVRVDAPDRRLDDLPPGSRVGTDSPRRTGFVLARRPDLVVHPLHGNVDTRLRRLDTG
                     ATDALVLACAGLDRIGLGARIAQVN"
     gene            complement(649..>1765)
                     /locus_tag="VIU37_04965"
     CDS             complement(649..>1765)
                     /locus_tag="VIU37_04965"
                     /inference="COORDINATES: protein motif:HMM:NF013641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013330.1"
                     /translation="VPAVERGRFATQLRQAPPRGAILVETCHRVEAYVVTSDDPARVA
                     EASFLPAGGGVLTGRDAVRHAIEVAVGADSVVVGEDQILHQLRGAVTAARSNRRIDAE
                     LERLFAVALRAGRRARSWRQGRQPSLADLALEVMERRTPSLRGRDLLVVGAGRMGRLA
                     AVAAMATGARVSVASRSDEHARLLASETGARAEAFDPGARAGGFAGVLVALGGPWPIG
                     SAAIAALVASRPVVVDLSVPPALPAGAAASLGDRLVTADDLARIEGRTGPAASASDRR
                     VADLVERTASEFLDWQRAHAGRSAAEALVRRADLEREAELEQLWRRHPDLQPELRDAI
                     ERMTESFARRLLREPLERLGRDTDGHNERAVRDLFAV"
BASE COUNT          256 a          669 c          613 g          227 t
ORIGIN      
        1 gtgaaattat tccagttgga aaagtagtga tttttttatg aacagtagtg acatccatga
       61 tgctttttag aaattccata aaataaaaat acaatcaatt tacttgggcg atccgcgccc
      121 cgagcccgat ccggtcgaga ccggcgcagg cgagcacgag cgcatccgtc gctcccgtgt
      181 cgagccggcg cagccgggta tcgacgttgc cgtggagcgg atggacgacg agatcgggcc
      241 ggcgcgcgag cacgaatccc gtccgacgtg ggctgtcggt tcccacccgc gatccgggag
      301 gcaggtcgtc gagccggcgg tccggcgcat cgacccggac gacgagcgcg tcgcgcggat
      361 ccgcgcgcgg caggtaggcg ccgatgcgca ggcgccggtc ctcgtcggtc ggcacgtcct
      421 tggcgctgtg tacggcgacg tccacgtccc cggccaggag cgcccgctcg atcgcggcca
      481 tgaacgcgcc ctcgccccag gccgtgtccg gcgcccggcg atcgccggcc gtctcgatga
      541 tcgagatccg ggtcgtgcat cccgaccgct cgagcgcctc ggccaccagc cccgcctggg
      601 ccatcgccag ccggctgccg cgcgttccga tgacgacctg ccgcccggtc atacggcgaa
      661 caggtcccgg accgcgcgct cgttgtgccc gtccgtgtca cgccccaggc gttcgagggg
      721 ctcccgaagg agtcgccggg cgaacgattc ggtcatccgc tcgatcgcgt cgcggagctc
      781 gggctgcaga tcgggatgcc ggcgccagag ctgctccagc tcggcctccc gctcgaggtc
      841 ggcgcgccgg accagggcct cggccgcgct ccgccccgcg tgcgcccgtt gccagtcgag
      901 gaactcggag gcagtgcgtt ccaccaggtc cgcgacccgt cggtcggacg ccgacgccgc
      961 gggtccggtc cgcccctcga tgcgggcgag gtcgtcggcc gtcacgaggc gatcgccgag
     1021 tgaggcggcg gctccggccg ggagcgccgg tggcaccgac aggtcgacca caaccggccg
     1081 gctcgcgaca agggcggcga tcgcggccga cccgatcggc cagggtcccc cgagcgcgac
     1141 gagcacgccg gcgaagccgc ccgcacgcgc ccccggatcg aaggcctcgg cccgggcgcc
     1201 cgtctcggac gccagcaacc tggcgtgttc atcggaccgg ctggccaccg acacgcgggc
     1261 gccggtcgcc atcgccgcga cggccgccag ccggcccatc cgcccggcac cgaccacgag
     1321 caggtcgcga ccgcggagcg acggcgtccg acgctccatc acctcgagcg cgagatcggc
     1381 cagcgacggc tgccggccct ggcgccacga tctcgcccgc cggccggcac gcagggcaac
     1441 cgcgaacagc cgctcgagct ccgcatcgat ccgtcggttc gagcgtgccg cggtcaccgc
     1501 gcctcggagc tggtgaagga tctggtcctc gccgacgacc accgagtccg ccccgacggc
     1561 gacttcgatc gcgtggcgga ccgcgtcgcg cccggtcagg acgccgccgc cggccggcag
     1621 gaaggacgcc tccgcgaccc gcgccggatc gtcggacgtg accacgtagg cctcgacgcg
     1681 atggcacgtc tcgaccagga tcgcgccacg cggcggcgct tgccgcaact gcgtcgcgaa
     1741 gcggcctcgc tcgaccgccg gcacc
//
LOCUS       DATDDI010000347         1654 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_632003, whole genome shotgun sequence.
ACCESSION   DATDDI010000347 DATDDI010000000
VERSION     DATDDI010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632003"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..1166)
                     /locus_tag="VIU37_04970"
     CDS             complement(147..1166)
                     /locus_tag="VIU37_04970"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013331.1"
                     /translation="MPTPLLSIQDLTVDFRQPGWRTESFRAVDGVSFDIQAGETVGLV
                     GESGSGKSTIGRAALGLLKPSNGRITFDGKDITRRSAKEQRELARSLSAVFQDPYSSL
                     NPALTIDRSILEPVRVQRRLDEEEAKAKLRELLGAVRLPGAGNRFPHSFSGGQRQRIA
                     IARALSTEPRLMICDEAVSALDVITRGQIINLLSDIQEQTNVALLFIAHDLPIVAHHS
                     QRIVVLYRGRIMEQGPTDEVMDRPLHPYTHALLAAVPVLDPRQQSVRRRARSASVSVT
                     TANAAPPPMDGCVFAPRCPHAADVCWEKRPVDSRVGARLVQCHLFDAESGHPGTGAEM
                     ARQIA"
     gene            complement(1166..>1654)
                     /locus_tag="VIU37_04975"
     CDS             complement(1166..>1654)
                     /locus_tag="VIU37_04975"
                     /inference="COORDINATES: protein motif:HMM:TIGR01727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEY6013332.1"
                     /translation="LLIADEPTTALDVTIQAEILDLLRSLQSEIGTTVILVTHDLGVV
                     SDMCSRVAVMYAAQIVEVGDTADLLSNPSHPYTLSLMGAVPGMTARGGRLSAVEGTVP
                     SPQAWPVGCRFANRCPVAIPECRERPVPLLSDGERLRRCIREPSVGRAAIVVPELAQA
                     ES"
BASE COUNT          267 a          549 c          575 g          263 t
ORIGIN      
        1 gcgacgccgc cgctgccgct cgagcaggcg ctgacaccgg acgacgtcgc cgccgccgtg
       61 ctctatgcgg tcgaccagcc ggagcgggtc gacgtcaacg agatcctgct ccggccgcgc
      121 gggcagcctt tctaggccgc agccgttcag gcgatctggc gggccatctc ggcgccggtg
      181 cccggatggc cggactcggc atcgaacaga tggcactgca ccaaacgagc tccgacgcgg
      241 ctgtcgacgg ggcgcttctc ccaacagacg tcggcggcgt gcgggcatcg tggcgcgaac
      301 acgcatccgt ccatcggagg cggggcggcg ttcgccgtcg tgacgctgac gctggccgac
      361 ctggcgcgac gacgcacgga ctgctgccgc ggatcgagaa ccggcacagc agcaagcagt
      421 gcgtgcgtat acgggtgcag cggtcgatcc atgacctcgt cggtcggccc ttgctccatg
      481 atccggccgc ggtagagcac gacgatgcgc tgcgagtgat gcgcgacgat cggaaggtcg
      541 tgcgcgatga agagcagcgc cacgttcgtc tgctcctgaa tgtcggacaa gaggttgatg
      601 atctgccccc gcgtgatgac gtcgagggcg ctgacagcct cgtcgcagat catcagcctt
      661 ggctcggtgc tcagcgcgcg cgcgatcgcg atccgctgtc gctggccccc ggagaagctg
      721 tgcgggaagc ggttgccggc acctggcagc cgaaccgccc cgaggagttc gcgcagtttc
      781 gccttcgcct cctcctcgtc cagccgccgc tggacgcgga caggctcgag gatcgaccgg
      841 tcgatcgtga gtgcggggtt gagcgagctg tagggatcct ggaacaccgc gctcagagat
      901 cgggcgagct ctcgttgctc cttggcggaa cgcctcgtga tgtccttgcc gtcgaaggtg
      961 atgcgtccat tgctgggctt cagcagcccg agcgcggcgc ggccgatcgt cgattttccg
     1021 gatccggact cgccgaccag gccgaccgtc tcgccggcct ggatatcgaa cgagacgccg
     1081 tcgacggccc ggaacgattc cgtcctccat cccggctgtc gaaagtcgac cgtgagatcc
     1141 tggatgctca gaagcggcgt cggcatcagg actccgcctg ggcgagctcc ggcacgacga
     1201 tcgccgcgcg acccaccgaa ggttcccgga tacagcggcg gaggcgttcg ccgtcggaaa
     1261 ggagcggtac gggacgctcg cggcattcgg ggatagccac cggacagcga ttggcgaacc
     1321 gacatccgac gggccatgcc tgcggcgagg ggaccgtgcc ctcgaccgcg ctgaggcgtc
     1381 ccccgcgggc agtcatcccc ggaaccgcgc ccatcaggct cagggtgtac ggatgactcg
     1441 ggttgctgag gagatctgcc gtgtctccga cctcgacgat ctgcgcggcg tacatgactg
     1501 cgacacgcga gcacatgtcc gagacgacgc cgaggtcgtg ggtcaccagg ataaccgtcg
     1561 taccgatctc cgactgtagc gatcggagaa ggtcgaggat ctccgcctgg atcgtcacgt
     1621 cgagcgctgt cgtcggctcg tcggcgatca gcag
//
LOCUS       DATDDI010000348         1946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_611174, whole genome shotgun sequence.
ACCESSION   DATDDI010000348 DATDDI010000000
VERSION     DATDDI010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611174"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VIU37_04980"
     CDS             <1..402
                     /locus_tag="VIU37_04980"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6013333.1"
                     /translation="SGVTDALRTAGIDVRFETEELPLAPVADALIAWTVREGVTNVMR
                     HSGATRCTIRIGQTDTEVFAEIVDDGAGGGRGLASDGGEPVGAAGEAGSGFGLRGLAE
                     RVSSLGGAVVAGPLPDRGYRLRVTLPGSVAG"
     gene            419..1045
                     /locus_tag="VIU37_04985"
     CDS             419..1045
                     /locus_tag="VIU37_04985"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013334.1"
                     /translation="MIRVLLAEDQSMVRGALAALLALEGDIEVVSEVSRGDGVVAAAV
                     ASRPDVALLDIEMPGLDGISAAAELRASVPGCRIIMLTTFGRPGYLRRALEVGAIGFL
                     LKDAPATQLAIAIRRAMAGHRIVDPALAVTALSEGSNPLTEREREALLLSTTLGTIAE
                     IAARLSLSEGTVRNHLSAAIQKVGARNRAEAARLAEEKGWLEPGTERA"
     gene            complement(1069..>1946)
                     /gene="clpX"
                     /locus_tag="VIU37_04990"
     CDS             complement(1069..>1946)
                     /gene="clpX"
                     /locus_tag="VIU37_04990"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HEY6013335.1"
                     /translation="DATSLTEAGYVGEDVENILLRLIQAADFDVARAQRGIIYIDEID
                     KIARKADNPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQDFIQIDTTNVLF
                     ICGGAFDGLEKIVEERVGKRSIGFGSDSIMGPVERGRILEKLMPEDLLKFGLIPEFIG
                     RLPVMVTLSALSAEDLVRVLTEPKNAVTRQFEKFLSLDKVELAFTPGALQAAAEVALD
                     RKTGARALRSIVEESLLEVMYDIPDRTDIRKCIITEETIRSGRLPLLLTKTEIDRGVD
                     ETNYEEWLAERSASA"
BASE COUNT          263 a          671 c          718 g          294 t
ORIGIN      
        1 agcggggtga ccgacgcgct ccggacggcc gggatcgacg tccggttcga gaccgaggag
       61 ctgccgctcg cgccggtcgc cgacgccctg atcgcctgga ccgtccgcga gggcgtcacc
      121 aacgtcatgc gccacagcgg cgcgacccgc tgcacgatcc ggatcggcca gacggacacc
      181 gaggtcttcg ccgagatcgt cgacgacggg gccggcggcg gccgcggact cgcgtcggac
      241 gggggcgaac ccgtcggcgc ggcgggcgag gccggcagcg gcttcgggct ccgcggcctg
      301 gccgagcgcg tctcgagcct gggcggggcc gtcgtggccg ggccgctccc agatcgcggc
      361 tatcgactcc gggtcacgct cccgggttcg gtcgccggat gacgacgcgg ggcgccccgt
      421 gatccgcgtg ctgctcgccg aggaccagtc gatggtgcgc ggcgcgctcg ccgccctcct
      481 cgcgctcgag ggggacatcg aggtcgtcag cgaggtgtcc cggggcgacg gtgtggtggc
      541 ggctgccgtt gcgtcgaggc ccgacgtcgc cctgctcgac atcgagatgc cgggactcga
      601 cgggatctcc gccgcggccg agcttcgtgc ttcggtaccg ggctgccgga tcatcatgct
      661 gacgaccttc gggcggcctg gctacctgcg gcgtgccctc gaggtcgggg cgatcgggtt
      721 cctgctcaag gacgcaccgg cgacgcagct cgcgatcgcg atccggcggg cgatggccgg
      781 gcaccggatc gtggacccgg cgctggccgt cacggcgctg agcgagggca gcaacccgct
      841 gaccgagcgc gaacgcgagg cgctgctcct gtcgaccacc ctcgggacga tcgccgagat
      901 cgcggcgcgg ctgtcgctgt cggagggcac cgtgcgcaat cacctgtcgg cggcgatcca
      961 gaaggtcggg gcgcgcaacc gcgcggaggc ggcccggctg gccgaggaga agggctggct
     1021 cgaacccggg acggagcggg cgtagctcga gctgcgcgcc aaccgcctct aggcgctcgc
     1081 gctccgctcg gcgagccact cttcgtagtt ggtctcgtcc acgccgcggt cgatctcggt
     1141 cttggtcaac agcagcggca ggcggccgga ccggatggtc tcctcggtga tgatgcactt
     1201 gcggatgtcg gtccggtcgg ggatgtcgta catgacctcg aggagcgact cctcgacgat
     1261 cgagcgcagg gcacgcgccc cggtcttgcg atccagcgcg acctcggccg cggcctggag
     1321 ggctcccggc gtgaacgcca gctcgacctt gtcgagcgag aggaacttct cgaactggcg
     1381 cgtgaccgcg ttcttcggct cggtcaggac gcggaccagg tcctcggccg acagcgccga
     1441 cagcgtgacc atgaccggca accggccgat gaactccggg atcagcccga acttgagcag
     1501 gtcctcaggc atgagcttct cgaggatccg ccctcgctcc accgggccca tgatcgagtc
     1561 cgagccgaag ccgatcgacc gcttccccac ccgctcctcg acgatcttct cgagcccatc
     1621 gaaggcgccg ccgcagatga acagcacgtt ggtcgtgtcg atctggatga agtcctggtg
     1681 ggggtgcttc cggccgccct gcggcgggac gttggcgacg gtgccttcga ggatcttcag
     1741 gagcgcctgc tggacgccct cgccggagac gtcacgggtg atcgacgggt tgtccgcctt
     1801 gcgggcaatc ttgtcgatct cgtcgatgta gatgatcccg cgctgggccc gggcgacgtc
     1861 gaagtcggcc gcctggatga gccgcagcag gatgttctcg acgtcctcgc cgacgtagcc
     1921 ggcctcggtc agcgacgtgg cgtcgg
//
LOCUS       DATDDI010000349         2092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_278245, whole genome shotgun sequence.
ACCESSION   DATDDI010000349 DATDDI010000000
VERSION     DATDDI010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278245"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..794
                     /locus_tag="VIU37_04995"
     CDS             <1..794
                     /locus_tag="VIU37_04995"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEY6013336.1"
                     /translation="EAGTKLLEPHGRMVRLTEAGQMLVRHADTITAAIAAAEADLAAT
                     RSEVVGTLSVAAFPTAARAIMPKVFSGLGRSHPKLRLMLRDLESNESLLALQMDEVDL
                     AVVDEYDEASRVRAPGIETVEILRDPLYVAISPDVEVPAAGFALTDLRDQPWIMDTEA
                     STIFQVTWRACRRAGFDPQIRSHCKDYSVILALVGAGLGVSVLPGLALYDRLIRARVA
                     PLQPPLVRNVLAAIRSERRTHPAVAALLAELTAFGAGYGDPGQAT"
     gene            964..>2092
                     /locus_tag="VIU37_05000"
     CDS             964..>2092
                     /locus_tag="VIU37_05000"
                     /inference="COORDINATES: protein motif:HMM:NF013974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013337.1"
                     /translation="MNQSHECLDGNEAAARIAYALSEVISIYPITPASGMAEHCDDWS
                     AAGRPNLWGKVPDVIEMQSEAGAAGALHGALQKGALGTTFTASQGLLLMVPNMFKIAG
                     ELTPTVIHVAARTIATHALSIFGDHSDVMHTRSTGWAMLAAGSVQEAHDFALVAHVAT
                     LRSRVPFLHFFDGFRTSHEINKIALLQDDDLRALVREADVLAFRARGMTSDAPAVRGT
                     AQNPDVFFQAREASNPYHLAVPGIVQEVMDELAARTGRHYGLADYHGAPDAERVVVVM
                     GSASGAVEETVDALTAAGEKVGMLRIRLFNPFPAEQIVAALPATVRSIAVLDRTKEPG
                     AVGEPLYLETVAALAEAMDRDDPRFSAAPRVIGGRYGLSSKE"
BASE COUNT          301 a          779 c          716 g          296 t
ORIGIN      
        1 aggaggcggg gaccaagctg ctcgagccgc acggccgaat ggttcggctg acggaggcgg
       61 gccagatgct ggtccgccat gccgacacga tcaccgcggc gatcgccgcc gccgaggccg
      121 atctcgcggc cacccgcagc gaggtcgtcg gcacgctcag cgtggcggcc ttcccgaccg
      181 ccgcccgggc gatcatgccc aaggtcttct ccggtctcgg acggagccac ccgaagctcc
      241 ggctgatgct ccgcgacctc gagtcgaacg agagcctgct ggccctccag atggacgaag
      301 tcgatctcgc cgtcgtcgac gagtacgacg aggcgagccg ggttcgggcg cccgggatcg
      361 agaccgtcga gatcctgcgc gaccccctct acgtggcgat ctcgcccgac gtcgaggtgc
      421 cggccgccgg cttcgcgctg accgaccttc gggaccagcc ctggatcatg gacaccgagg
      481 cgagcacgat cttccaggtg acctggcgcg cctgccggcg ggccggcttc gatccccaga
      541 tccgatcgca ctgcaaggac tactcggtca tcctcgcgct cgtcggcgcc ggtctcgggg
      601 tgagcgtgct gcccggcctg gcgctgtacg accgcctcat ccgcgcccgc gtggccccgc
      661 tgcagccgcc gctcgtccgg aacgttctcg cggcgatccg gtccgagcga cggacccatc
      721 cggccgtggc ggccctgctg gcggagttga cggccttcgg cgccgggtac ggggacccgg
      781 gccaggcgac ctaatggccc ggccctgaca cgccaaacgg cactccgccc ggcccggcgt
      841 tgagtggcat cattgctttg ggtaccggtg ccaggacgaa tgccggcgcc actaccgacg
      901 tccccatctc gcgtgccgcc gtccgttcat gacgctcagc gcgccccggc aaaggaagtc
      961 cgtgtgaacc agtcccacga gtgtctcgac ggcaacgaag cagccgcacg gatcgcctac
     1021 gccctgagcg aggtgatctc catctacccg atcaccccgg cctccgggat ggccgagcac
     1081 tgcgacgact ggtcggcggc gggtcgcccc aacctgtggg gcaaggtccc cgacgtcatc
     1141 gagatgcagt cggaggcggg cgccgccggt gcgctccacg gcgcgctcca gaagggcgcc
     1201 ctggggacca cgttcacggc ctcgcagggc ctgctcctga tggtccccaa catgttcaag
     1261 atcgcgggcg agctgacgcc gaccgtcatc cacgtcgccg cccggacgat cgccacccac
     1321 gcgctgtcga tcttcggcga ccacagcgac gtgatgcaca cccggagcac cggttgggcg
     1381 atgctcgccg ccgggtccgt ccaggaggcg cacgacttcg ccctggtcgc ccacgtggcg
     1441 accctccgca gccgcgtgcc gttcctccat ttcttcgacg ggttccggac gagccacgag
     1501 atcaacaaga tcgcgctgct gcaggacgac gacctccgcg ccctggttcg cgaggcggac
     1561 gtgctcgcct tccgggcccg cggcatgacc tccgacgcgc cggccgtgcg cggtaccgcg
     1621 cagaacccgg acgtcttctt ccaggcgcgt gaggcctcga acccgtacca cctcgcggtc
     1681 ccgggcatcg tccaggaggt catggacgag ctggcggcca ggaccggccg ccactacggc
     1741 ctggccgact accacggcgc gccggacgcg gagcgcgtgg tcgtggtgat gggctcggcc
     1801 agcggcgcgg tcgaggagac cgtcgacgcg ctgacggccg caggcgagaa ggtcggcatg
     1861 ctccgcatcc gcctgttcaa cccgttcccc gcggagcaga tcgtggccgc cctgccggcg
     1921 accgttcggt cgatcgcggt gctcgaccgg accaaggagc cgggcgcggt cggcgaaccg
     1981 ctctatctcg agaccgtcgc ggcgctggcc gaggcgatgg accgcgacga cccccggttc
     2041 tcggcggccc cgcgcgtgat cggcgggcgc tacgggctgt cgtccaagga ga
//
LOCUS       DATDDI010000350         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_736108, whole genome shotgun sequence.
ACCESSION   DATDDI010000350 DATDDI010000000
VERSION     DATDDI010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736108"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VIU37_05005"
     CDS             complement(<1..598)
                     /locus_tag="VIU37_05005"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:NF015290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HEY6013338.1"
                     /translation="MEQLLALEMIRVTEAAAIESARYMGRGAHDEADAAATEAMRRTM
                     DEIEMAGTIVIGEGERDEAPMLYIGEQVGAAGDGAPEIDIAVDPLEGTNLVATGSANA
                     ITVLAASERGGLVHAPDTYLEKLCVGPLVAGHVDITVSPSENINRIAEVLRRKPADIT
                     VVILERPRHDALIAEVRATGARIKLISDGDLSAAISCAV"
     gene            complement(742..>1605)
                     /gene="purH"
                     /locus_tag="VIU37_05010"
     CDS             complement(742..>1605)
                     /gene="purH"
                     /locus_tag="VIU37_05010"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF013931.4"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEY6013339.1"
                     /translation="RSATLADATRLQGEMPSFNNLLDLDAAYRIARDYTAPTVAIVKH
                     TDPVGLASHDELVEAYRHALETDPVASFGGIVGVNRELDGATAREIAANSYEAVVAPG
                     FSHAALGILRGKPGLELLAVPPDPTEGMRDYGIASLDFKRIAGGLLVETQDELGLDRG
                     RLQVVTARRPTLEELTDMLFAWRAVRHVRSNAVVLARNGATVGIGAGQASRLVSVEIA
                     VRRAGDRAKLAVMASDAYFPFPDGIQAAAGAGVTAIIQPGGSIRDEMAIEVADRHHLA
                     MVFTGRRHFRH"
BASE COUNT          207 a          574 c          575 g          249 t
ORIGIN      
        1 ggacggcgca gctgatcgcg gccgacaggt cgccgtcgga gatgagcttg atccgcgcgc
       61 cggttgcccg gacctcggcg atgagggcgt cgtggcgcgg gcgctcgagg atgacgacgg
      121 tgatgtcggc gggcttgcgg cggaggacct cggcgatgcg attgatgttc tccgacgggc
      181 tcacggtgat gtcgacatgg cccgcgacga ggggtcccac gcagagcttc tcgagatacg
      241 tgtcgggggc atggaccagc ccgccccgct ccgaggcggc gaggacggtg atcgcgttgg
      301 ccgagccagt tgcgacgagg ttcgtgccct cgagcgggtc cacggcgatg tcgatctcgg
      361 gcgcgccgtc gccggcggcg ccgacctgct ccccgatgta gagcatcggg gcctcgtcgc
      421 gctcgccttc gccgatgacg atcgtgccgg ccatctcgat ctcgtccatc gtccggcgca
      481 tcgcctcggt cgccgccgca tccgcctcgt cgtgcgcgcc gcgacccatg taccgcgccg
      541 attcaatcgc cgcggcctcc gtgacccgga tcatctcgag cgcgagcagt tgttccatgg
      601 cgctaccgac gggaggcgat catgcggcac gccccccgcg ttggccgctc cgctcgttcg
      661 ctcacgcact cgagagtgcg ctcgctccga tgctcgcggc cgccttgcgc tcgcgccacc
      721 tgatcgcctc cttgcgggtt ctcagtgacg gaaatggcgt cttcccgtga agaccatcgc
      781 caggtggtgg cggtcggcca cttcgatcgc catctcgtcg cggatcgagc cgcccggctg
      841 gatgatcgcg gtcacgcccg cgccggccgc cgcctggatc ccgtcgggga aggggaaata
      901 ggcgtcggag gccatcacgg ccagcttcgc ccggtcgccg gcccggcgca cggcgatctc
      961 gaccgaaacc agccggctgg cctgcccggc gccgatcccg accgtggcgc cgttgcgcgc
     1021 cagcacgacc gcgttcgagc ggacgtggcg gacggcgcgc caggcgaaga gcatgtcggt
     1081 cagctcctcg agcgtcgggc ggcgcgcggt cacgacctgg agccgcccgc gatcgagccc
     1141 gagctcgtcc tgggtctcga ccagcaggcc gccagcgatc cgcttgaagt cgaggctggc
     1201 gatcccgtag tcgcgcatcc cctcggtggg atccggcggg acggcgagca gctccagccc
     1261 gggcttgccg cgcaggatcc cgagcgccgc gtggctgaac ccgggggcga cgacggcctc
     1321 gtacgagttg gctgcgatct cccgagccgt cgccccgtcc agctcgcggt tgaccccgac
     1381 gatcccgccg aacgacgcga ccgggtcggt ctcgagtgcg tggcggtacg cctcgacgag
     1441 ctcgtcgtgc gaggccagcc cgaccggatc cgtgtgcttg acgatcgcca ccgtcggcgc
     1501 cgtgtagtcg cgcgcgatcc ggtaggcggc atcgaggtcg agcaggttgt tgaacgacgg
     1561 catctcgccc tgcagacggg tcgcgtcggc cagcgtcgca ctgcg
//
LOCUS       DATDDI010000351         1598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_632037, whole genome shotgun sequence.
ACCESSION   DATDDI010000351 DATDDI010000000
VERSION     DATDDI010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632037"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VIU37_05015"
     CDS             complement(<1..374)
                     /locus_tag="VIU37_05015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013340.1"
                     /translation="MAGVKKLPGVDELKALRRDGKTYKEIADTYGATPGAVYFAMRRA
                     GLTRRQVCPSCGIGTVRATFQVLITYPPANFGPPPPDSDSFVSAECDNLACPDGLAGD
                     GDGRLRRAYLVRERDDNGVPIPA"
     gene            complement(376..603)
                     /locus_tag="VIU37_05020"
     CDS             complement(376..603)
                     /locus_tag="VIU37_05020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013341.1"
                     /translation="MTVYVDLWDDGYEVMATDTGDSDDVEREVKGRFEPREVAAGFRG
                     VRVVIDDMRGGSGLVPTAVHTYEPEDLEGGD"
     gene            complement(605..889)
                     /locus_tag="VIU37_05025"
     CDS             complement(605..889)
                     /locus_tag="VIU37_05025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013342.1"
                     /translation="MTWIDRQDPEKVERALGALRAQKPGYIEREADGDERFALWLANV
                     DARMARMVGVGHGDIADWQWWDSYEAGDSPRAAAVEALEADDLPWPVGGE"
     gene            complement(934..1275)
                     /locus_tag="VIU37_05030"
     CDS             complement(934..1275)
                     /locus_tag="VIU37_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013343.1"
                     /translation="MKVYLAHIVSKDEENPGGANMPIPAESLAEAAQAAQAYVDTLDE
                     PPAELVAITSLDELMQAQQKAAESGLLGLIEQFAEHGDGDHDEPKVPRQRKHGAHPEP
                     AMASAGGGGYL"
     gene            complement(1293..>1598)
                     /locus_tag="VIU37_05035"
     CDS             complement(1293..>1598)
                     /locus_tag="VIU37_05035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013344.1"
                     /translation="ENSGQEAEHLERNDVTGALEHIDAMQDDVFALQGLVPPLPELRD
                     HWVNQWDLHERGLALIETGLETYDADTLNKGVDVEYEAMAEAEAFTAHIAEITGTAG"
BASE COUNT          177 a          617 c          542 g          262 t
ORIGIN      
        1 gcggggatcg ggacgccgtt gtcgtcgcgc tcccgcacga ggtacgcccg acgcagccgc
       61 ccgtcgccgt cgcccgcgag cccgtccggg caggccaggt tgtcgcactc cgccgacacg
      121 aaggagtccg agtccggcgg cggcggcccg aagttggccg gcgggtaggt gatgagcacc
      181 tggaaggtgg cgcgcacggt gccgatcccg caggaggggc acacctgccg ccgggtcagg
      241 ccggcgcggc gcatcgcgaa gtagaccgcg cccggcgtcg cgccgtacgt gtcggcgatc
      301 tccttgtacg tcttgccgtc ccggcgcaac gccttgagct cgtccacgcc cggcagtttc
      361 ttgacgccgg ccatgtcagt cgcccccctc gaggtcctcg ggctcgtagg tgtgcaccgc
      421 ggtcggcacg agcccggacc cgccgcgcat gtcgtcgatg acgacccgga cgccgcggaa
      481 cccggccgcg acctcccgcg gctcgaaccg tcccttgacc tcccgctcga cgtcgtcgga
      541 gtcgccggtg tcggtcgcca tgacctcgta gccgtcgtcc cacaggtcca cgtacacggt
      601 cacgtcactc gcctcctacc ggccacggca ggtcgtccgc ctcgagcgcc tcgaccgccg
      661 cggcgcgggg tgagtcgccc gcctcgtacg agtcccacca ctgccagtcc gcgatgtcgc
      721 cgtggccgac gccgaccatc cgcgccatgc gggcgtccac gttggcgagc cagagggcga
      781 accgctcgtc gccgtccgcc tcccgctcga tgtagccggg cttctgggcc cgcagcgcgc
      841 cgagcgcccg ctcgaccttc tccgggtcct gccggtcgat ccacgtcatg ccgtcctcct
      901 ctcggggccc gggtgggcgg cccgggcgcg gggtcacagg tagccgccgc cgccggcgga
      961 ggccatcgcg ggctccgggt gcgcgccgtg cttccgctgc cgcggcacct tcggctcgtc
     1021 gtggtcgccg tcgccgtgct cggcgaactg ctcgatcagg ccgagcagcc ccgactccgc
     1081 cgccttctgc tgcgcctgca tcaactcgtc cagcgacgtg atcgcgacga gctcggccgg
     1141 cggttcgtcg agggtgtcga cgtacgcctg cgccgcctgc gctgcctcgg cgagggactc
     1201 ggccgggatc ggcatgttgg ctcctcccgg gttctcctcg tccttgctga cgatgtgggc
     1261 caggtagacc ttcatcgtgg ttccactccc tcctaaccgg ccgtgccggt gatctcggcg
     1321 atgtgggccg tgaacgcctc ggcctcggcc atcgcctcgt actcgacgtc cacgcccttg
     1381 ttgagcgtgt cggcgtcgta cgtctcgagc cccgtctcga tcagcgcgag cccgcgctcg
     1441 tgcaggtccc actggttgac ccagtggtcg cgcagctcgg gcagcggggg caccaacccc
     1501 tgcagcgcga acacgtcgtc ctgcatcgcg tcgatgtgct cgagcgcgcc ggtcacgtcg
     1561 ttccgctcga ggtgctcggc ctcctggccg gagttctc
//
LOCUS       DATDDI010000352         3801 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_111514, whole genome shotgun sequence.
ACCESSION   DATDDI010000352 DATDDI010000000
VERSION     DATDDI010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111514"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VIU37_05040"
     CDS             <1..252
                     /locus_tag="VIU37_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013345.1"
                     /translation="LIGMTIKVWTSNDLLSTYKIVRVRRHVYTLEGAYSARTEQLWVE
                     TSEGPHGTKNKLIVVAKRIGSTPADHDAAHPTPHPKICH"
     gene            505..843
                     /locus_tag="VIU37_05045"
     CDS             505..843
                     /locus_tag="VIU37_05045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013346.1"
                     /translation="MNRLARIVRLASLRETRRAITGAARSPELRALARRTRTDRRGLL
                     RDLRDPANARAFVRAVVRHPAARELASAGMLVLPGRYLPLGWVAAWAANRVLRRMAPA
                     PAVPGEPGRT"
     gene            complement(822..896)
                     /locus_tag="VIU37_05050"
     tRNA            complement(822..896)
                     /locus_tag="VIU37_05050"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(862..864),aa:Lys,seq:ctt)
     gene            complement(979..2649)
                     /locus_tag="VIU37_05055"
     CDS             complement(979..2649)
                     /locus_tag="VIU37_05055"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004035 - alkaline phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEY6013347.1"
                     /translation="MPALLLGPLLRHVDERAATIWVETDAACTALVRAGDLECAERTF
                     SVAGHHYAVVVVDGLAPGSSTPYEVELDGERVWPLADSPYPPSRIRTVDPAAPVRLLF
                     GSCREPPDPDRQVRPGLDPDVLDAYAIRMASQAHEEWPDLLLMLGDQIYADDTTRRMQ
                     RFIRSRRDVSAPPRLEVADFEEYTHLYYETWGAPNIRWLLSTLPSAMIFDDHDVRDDW
                     NTSQAWRLDMQKTTWWERRITGALMSYWIYQHLGNLAPAGLAADATYRAVRSVPDGEA
                     ILRAFATGADREADGAKGALWSFRRDVGRVRLVIIDSRCGRILADRSRSMVGEAEFAW
                     IEAQVGDGDYDHLVVGTSLPWLLPRALHDLESWDEALAAGTRFAPLAAFGEWLRRAVD
                     LEHWAAFRRSFDRLTDLFRHIGRGGDGTMPPATICVLSGDVHHTYVAEAEFGEPMATR
                     VYQVTCSPIHNTIPRLMRVVFRIGWSRTAERVTRFLARLAGVPPLPIRWHHPTGPHFG
                     NELGLVVFQGRTAQIVLERSVRPAKLLPGEDLKATSVGLSIVYDEALT"
     gene            complement(2727..2918)
                     /locus_tag="VIU37_05060"
     CDS             complement(2727..2918)
                     /locus_tag="VIU37_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013348.1"
                     /translation="MTRERPQIVVIRQGGDHGCLITILLLIVAWPLAIVYWLVRLIVW
                     AVGSLVDWLTLGPVRRRRP"
     gene            3215..3514
                     /locus_tag="VIU37_05065"
     CDS             3215..3514
                     /locus_tag="VIU37_05065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013349.1"
                     /translation="MTDHQTIERTTVVHDGIERDETIEEVRPGAPRHGDEEAGGAIAG
                     GVGGAAVGAVVGGPVGAVVGGAIGAATGATAGAADERAKDVDEEVVVERQTTTRG"
BASE COUNT          590 a         1361 c         1340 g          510 t
ORIGIN      
        1 ctgatcggca tgaccatcaa ggtgtggacc agcaacgacc tcctgtcgac ctacaagatc
       61 gtccgggttc gccggcacgt gtacaccctg gagggcgcct actccgcgag gaccgaacag
      121 ctctgggtgg aaacctccga gggcccgcac ggcaccaaga acaagctgat cgtcgtggcc
      181 aagcggatcg gcagcacgcc ggccgaccac gacgccgcgc acccgacgcc gcacccgaag
      241 atctgccact gatcggacgg gagattccgc gtcccgggcc taacgatttc gcccgggcga
      301 ccgtttctct cggcaaggac ctcgggattg cagccggcat cggtgtcccc cggggtgacg
      361 gcgctcccga ggtccgtttc ctgacccgca cggtgaccac ccgcccggcg cgtgcctgtc
      421 ccgggcggcg ttcgtcgtct ccctgtaacg gtcttgccgt cccggccggc gagggctgtc
      481 ggtggacgcg cctagcatcg gcaggtgaac cgactcgccc gcatcgtccg cctcgcctcg
      541 ctgcgcgaaa cccgccgcgc gatcaccggt gcggctcgat cacccgagct gcgtgcgctt
      601 gcccgacgaa cccggaccga tcggcgggga ctgctccggg acctgcgtga cccggcgaac
      661 gctcgcgcat tcgtccgcgc cgtcgttcgg catcctgcgg cccgtgagct cgccagcgcg
      721 gggatgctgg tactgccggg gcgctacctg ccgctcggct gggtcgccgc ctgggcagcc
      781 aaccgggtcc tccgacgaat ggcgccggcg cccgcggtgc ctggtgagcc cggaaggact
      841 tgaaccttca acccgctgat taagagtcag ctgctctgcc attgagctac gggcccacga
      901 gcccgggatg ataccgcagc ggacgggatc gcggcccgcc gccctgtcgt tgcccccgtg
      961 ccgccggcac cgagcccgct acgtcagcgc ctcgtcatag acgatggaca gcccgaccga
     1021 ggtcgccttc aggtcctcgc cgggcagcag cttcgccgga cggaccgaac gctcgagcac
     1081 gatctgcgcg gtccgcccct ggaacacgac gaggcccagc tcgttgccga aatggggtcc
     1141 cgtggggtga tgccagcgga tcggcaaggg cggaacgccg gccagccgcg ccaggaaccg
     1201 ggtgacgcgt tcggcggtcc tgctccagcc gatccggaag accacccgca tcaggcgcgg
     1261 gatcgtgttg tggatcggcg agcaggtgac ctggtagacg cgcgtcgcca tcggctcgcc
     1321 gaactcggcc tccgcgacgt aggtgtggtg gacgtcgccg gagaggacgc agatcgtggc
     1381 cggtggcatg gtcccgtccc cgccgcgccc gatgtggcgg aagaggtcgg tcagtcgatc
     1441 gaacgacctg cggaaggccg cccagtgctc gagatcgacg gcgcgccgca gccactcccc
     1501 gaacgcggcc agcggtgcga accgggtccc cgccgcaagc gcctcatccc acgattcgag
     1561 gtcatgcagc gcgcggggca ggagccacgg cagcgacgtg cccaccacga gatggtcgta
     1621 gtcgccgtcc ccgacctgcg cttcgatcca ggcgaattcg gcctcgccca ccatggatcg
     1681 gctgcggtcg gcaaggatcc ggccgcagcg cgagtcgatg atcaccagcc ggacgcggcc
     1741 gacgtcccgc cggaacgacc acagggcacc cttggctccg tccgcctcgc gatcggcccc
     1801 cgtcgcgaag gcccggagga tcgcttcgcc gtcggggacg gaccggacgg cgcgataggt
     1861 ggcatccgca gccaggcccg cgggcgcgag attcccgaga tgctggtaga tccagtagga
     1921 catgagggcg ccggtgatcc gccgctccca ccaggtcgtc ttctgcatgt cgaggcgcca
     1981 ggcctgcgag gtgttccagt catcgcggac gtcgtggtcg tcgaagatca tcgcgctggg
     2041 cagcgtcgac agcagccagc gaatgttcgg cgcgccccac gtctcgtagt agaggtgggt
     2101 gtattcctcg aagtccgcga cctccagcct gggcggcgcg gagacatccc gacggctccg
     2161 aatgaagcgc tgcatccgcc tcgtggtgtc gtcggcatag atctgatcgc cgagcatcag
     2221 caggaggtcg ggccactcct catgggcctg gctggccatc cggatcgcgt aggcgtcgag
     2281 cacgtcgggg tcgaggcccg gccgcacctg ccggtccggg tcaggcggct cgcggcagga
     2341 gccgaacagc agccggaccg gcgcggccgg gtccaccgtc cggatgcggc tcggtggata
     2401 gggcgagtcc gcgagcggcc acacccgctc gccgtcgagt tcgacctcgt acggggtgga
     2461 cgatccgggt gccaggccgt cgaccacgac gaccgcgtag tggtggccgg cgacgctgaa
     2521 cgttcgttcc gcgcattcga ggtcccccgc gcgaacgagc gccgtgcagg cggcatccgt
     2581 ctcgacccag atcgtcgcgg cccgttcgtc cacatggcga aggagcgggc caagcagcag
     2641 cgctggcatc gtcaggtcac ctcattccgg ttcgacgttc ggcgtcgaac ggcccggcgt
     2701 tcggcatcgt cgatcccggg cggcgctcaa ggacgtcgac gtctgaccgg ccccagggtc
     2761 agccagtcca cgagcgatcc gacggcccag acgatcaggc gaaccagcca gtacacgatg
     2821 gccagcggcc acgcgacgat caagaggagg atggtgatca ggcagccgtg gtctccgccc
     2881 tggcggatga ccacgatctg cgggcgctct cgcgtcacgc cggctcggtg ggagcgaggt
     2941 cgtctcgtac ccgcacggca ggtctccttc gggttcggtt ggccccggcg gcggcattgt
     3001 ggcaccgcga cgctgccagc gacgtacgac ccgcgggtgc ggccgctgca gcggcctcgc
     3061 agtggcgacg gggatggcgc tcccggccac cgccggacgt ctgccgcatc gctgcaacgc
     3121 taccgggccg gtcgaagcgc tccccggcga ggcggccggc cgcatcgtga tccggcccat
     3181 caccgtccgc gaccatcgcg aaaggagaac cacgatgacc gatcaccaga ccatcgagcg
     3241 caccaccgtc gtccatgacg ggatcgagcg ggacgagacc atcgaggagg ttcgacccgg
     3301 cgcccctcgc cacggtgacg aggaggccgg cggcgccatc gccggaggcg tcggcggcgc
     3361 ggccgtcggg gccgtcgtcg gcggcccggt tggggccgtc gtcggaggcg cgatcggcgc
     3421 tgccacgggg gccacggccg gcgccgccga cgagcgtgcc aaggacgtcg acgaggaggt
     3481 cgtcgtcgag cgccagacga ccacgcgcgg gtagccgctc ggcgcccgaa cgcagccacc
     3541 acgatcggcc cgcccggcgc acacgcacgg gcgggccacg acggattcgg aggcccccac
     3601 gcaacaccag gaagttcgag accccggcac cagacgcgcc atcgtccttg ggcgcaagcg
     3661 caagggccgg aagaccgcga gcatcgtccg cgaggtgcac gcgacgctcg tggcggcgca
     3721 ctggaaggtc gaccgcaagg tcgtgacccg gaagcgcgac ctgacccgtg cggcgacccg
     3781 cgcggtcaag cgcggttgcg a
//
LOCUS       DATDDI010000353         3016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_361543, whole genome shotgun sequence.
ACCESSION   DATDDI010000353 DATDDI010000000
VERSION     DATDDI010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361543"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..925
                     /locus_tag="VIU37_05070"
     CDS             152..925
                     /locus_tag="VIU37_05070"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEY6013350.1"
                     /translation="MSGRLSDKVSLITGAGSGIGRASAILFAAEGSRVAVADIDPDAA
                     RETVRLITGAGGTAADFRVDVTDPDDGTALAVAVVQRFGTIDVLFNNAGIAGVGVLHE
                     TSIELWDRVMAVNVRGVFLVARAVLPHMLAAGRGSIINMSSTIAEIGLANRAAYAASK
                     GAVLALTRQMQADYAAHGIRVNALLPGTIHTPFVDRYLAESYDDPVAGLAALKKRQLT
                     GDLGRPEDVAAAALFLASDESRFVLGSGMFVDGGVRGAK"
     gene            933..1802
                     /locus_tag="VIU37_05075"
     CDS             933..1802
                     /locus_tag="VIU37_05075"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY6013351.1"
                     /translation="MRLLTRAAPDGERLAVATDGGLVDVADLLGGGSWTMARLLADVD
                     ASVAAIARALARGDPTRTLAPAGAVWLPPVTRPGKIIAIGRNYHEHAAEEGETAPPDP
                     VVFAKFPTSLVGHDADIAWRSADTDQVDYEAELAVVVGRMARDVPVSRALDHVLGYTC
                     LNDVSARDLQFGDGQWVRGKSLDTFCPMGPWIVTADEVPDPGRLRIRCLVNGEVVQDA
                     STSQMVHDVPSLVAFCSRFMTLEPGDVIATGTPGGVGVFRDPPRFLGHGDDVVVEIDG
                     IGRLANHCRVIGT"
     gene            1807..>3016
                     /gene="larA"
                     /locus_tag="VIU37_05080"
     CDS             1807..>3016
                     /gene="larA"
                     /locus_tag="VIU37_05080"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HEY6013352.1"
                     /translation="MPASGEMIEVELAYGSRGMPVRLPAAATTVITPRPRDSAPDPLA
                     ALRAAIEAPVAGPRLRDIARPGQRVAISVCDVTRPQPRRVMLQAIMEVLDGIVRPQDV
                     VVLIATGTHRASTAAERREMLGDEVLGAWRVVDHDARDRSSLVDLGRIGDVPVLLARE
                     WVEADLRITTGFVEPHFFAGFSGGPKMVAPGLAGLETTLALHNARRIGDPRATWGVIE
                     GNPVHDAVRAITTATRVDFSVDVLLDDRQRITRAFAGETLAMHAAACAAARREAMRPV
                     KAPFDIVVTTNSGYPLDQNLYQAVKGMSAAAEVVKTGGTIICAAECRDGLPDHGSYGR
                     LLHEGRSPADLLERIAASPVTIPDQWQVQIQARVQAKADVRLRCDGLADDEVRAAHLT
                     PIDDVGATVDR"
BASE COUNT          409 a         1093 c         1090 g          424 t
ORIGIN      
        1 acttcgtggc accggcgatc gtgcggaacg gccgctacgt cgccccgacc gcaccgggct
       61 acagcatcac gatgcgaccg gagtcactgc ggcggttcgc cttccccggc ggcgaggcgt
      121 ggacggccgc ggtcggcgcg agggcgggtc gatgagcggc cggctgtcgg acaaggtcag
      181 cctgatcacc ggcgcgggtt cggggatcgg tcgcgcgtcc gcgatcctgt tcgccgccga
      241 gggctcccgt gtcgccgtcg ccgacatcga cccggacgcc gcgcgcgaaa ccgtgcgcct
      301 gatcaccggg gccggcggca ccgccgccga tttccgggtc gacgtcaccg accccgacga
      361 tggcacggcc ctggcggtcg ccgtcgtgca gcgtttcggg acgatcgacg tgctgttcaa
      421 caacgccggt atcgccggcg tgggcgtgct ccacgaaacc tcgatcgagc tgtgggaccg
      481 ggtgatggcc gtcaacgtgc ggggcgtgtt cctggtcgca cgggcggtcc tgccgcacat
      541 gctcgccgcg ggtcggggct ccatcatcaa catgtcgtcg acgatcgccg agatcgggct
      601 cgccaaccgg gccgcgtatg cggcatcgaa gggggccgtg ctcgcgctca cccgccagat
      661 gcaggcggac tacgcggccc acggcatccg cgtcaatgcc ctgctgcccg ggaccatcca
      721 caccccgttc gtcgatcgct acctggccga gagctacgac gacccggtcg ccgggctggc
      781 cgcgctcaag aagcgccagc tgaccggcga cctcggacgg ccggaggacg tggccgccgc
      841 ggcgctgttc ctcgcctcgg acgaatcccg cttcgtcctc ggctccggca tgttcgtcga
      901 cggcggtgtc cggggcgcca agtgacggct cgatgcgcct cctgaccagg gcggcgccgg
      961 acggcgagcg gctcgccgtc gcgaccgacg gcggcctcgt cgacgtcgcc gacctgctcg
     1021 gcggcggcag ctggacgatg gcccgcctgc tcgccgacgt cgatgcgtca gtggcggcca
     1081 tcgcgcgggc cctggcgcgc ggcgacccga cgcggaccct ggcaccggct ggcgccgtct
     1141 ggctgccgcc ggtcacccgg ccgggcaaga tcatcgcgat cggccgcaac taccacgagc
     1201 acgcagccga agagggcgag accgccccgc ccgacccggt cgtgttcgcg aagttcccga
     1261 ccagtctcgt cggccacgat gccgacatcg cctggcgatc ggccgacacg gaccaggtcg
     1321 actacgaggc ggagctcgcc gtggtcgtcg gccggatggc acgggacgtt ccggtgtcgc
     1381 gggcgctcga tcacgtcctc ggctatacct gtctcaacga cgtctcggcg cgcgacctgc
     1441 agttcggcga cggccagtgg gtgcgcggca agagcctcga cacgttctgc ccgatgggtc
     1501 cctggatcgt gaccgccgac gaggtgccgg atcccgggcg cttgcggatc cgttgcctgg
     1561 tcaacggcga ggtcgtgcag gacgccagca cgtcccagat ggtccatgac gtcccgagcc
     1621 tggtggcctt ctgctcgcgg ttcatgaccc tcgagccggg cgacgtcatc gcgacgggga
     1681 cgccaggcgg tgtcggcgtc ttccgcgatc cgccgcggtt cctgggccac ggtgacgacg
     1741 tcgtcgtcga gatcgacggg atcgggcggc tggccaacca ctgccgggtc atcgggacct
     1801 gacgcgatgc cggcgagcgg cgagatgatc gaggtcgagc tggcctacgg atcgaggggc
     1861 atgccggtcc ggctgcccgc cgccgccacc accgtgatca cgccgcgacc gcgcgactcg
     1921 gcgccggacc cactggcggc tcttcgcgcc gcgatcgagg cccccgtcgc cgggccgcga
     1981 ttgcgcgaca ttgcccggcc cggccagcgc gtcgcgatct cggtctgcga cgtgacccga
     2041 ccgcagccgc gccgggtcat gctccaggcg atcatggagg tcctcgatgg catcgtccgg
     2101 ccgcaggatg tcgtggtcct gatcgcgacc gggacgcacc gtgcctcgac cgccgcggag
     2161 cgccgcgaga tgctcggaga cgaggtgctg ggagcgtggc gggtcgtgga ccacgacgcg
     2221 cgcgaccgga gcagcctggt cgatctgggc cggatcggcg acgtcccggt cctcctcgcc
     2281 cgcgagtggg tcgaggcgga cctgcggatc acgaccggct tcgtcgagcc gcatttcttc
     2341 gccgggttca gcggcggccc gaagatggtc gctccgggac tcgccgggct cgagacgacg
     2401 ctggcgctcc acaacgcccg ccggatcggg gaccccaggg ccacctgggg cgtcatcgag
     2461 ggcaaccccg tgcacgacgc ggtccgggcg atcacgacgg cgacgcgcgt cgacttctcg
     2521 gtcgacgtgc tcctcgacga ccggcagcgg atcacccgag ccttcgccgg cgaaaccctg
     2581 gcgatgcatg cggccgcctg tgccgcggcg cggcgcgagg cgatgcggcc ggtcaaggcc
     2641 ccgttcgaca tcgtggtcac gaccaacagc ggctatccgc tcgaccagaa cctctaccag
     2701 gcggtcaagg gcatgtcggc cgccgcggag gtcgtgaaga ccggtggcac gatcatctgc
     2761 gccgcggaat gccgtgacgg tctgccggat cacgggtcgt acggacgact cctgcacgag
     2821 ggccggtcgc cggccgacct gctcgagcgg atcgccgcct cgccggtgac gatccccgac
     2881 cagtggcagg tccagatcca ggcccgggtc caggccaagg cggacgtccg gctccggtgc
     2941 gacggcctgg ccgacgacga ggtccgcgcc gcgcatctga cgccgatcga cgacgtcggg
     3001 gcgacggtcg atcgcc
//
LOCUS       DATDDI010000354         2180 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_340581, whole genome shotgun sequence.
ACCESSION   DATDDI010000354 DATDDI010000000
VERSION     DATDDI010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340581"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..492)
                     /locus_tag="VIU37_05085"
     CDS             complement(31..492)
                     /locus_tag="VIU37_05085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013353.1"
                     /translation="MTLKPGWETLEPARPSPLLPLGAELAIHRAGLLTVEQIARLDAL
                     DRTGADTRLIAWELLRDALNGDPELRLLRLAARDRAWQRVNCAAKAAGLEPVVDDGYW
                     RVTPQAAAGAARLARFAACALIAPELLEDEVAELLTVPWGSVVGWSRRVDR"
     gene            complement(556..1137)
                     /locus_tag="VIU37_05090"
     CDS             complement(556..1137)
                     /locus_tag="VIU37_05090"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6013354.1"
                     /translation="MGSDAQETDRLDDMLAVWAREIPDLDPLTEGIVERIQGLAKSFD
                     RSMDETLAQYALDRRAFHLIGRLRSYGSPYQRSAGRLAEDMRLSSGAMTARLDRLEKA
                     GLIRRLPDPTDRRGTLVEPTEAGHAAWDATVGTQAKREAMFASVLSEPERQELHRLLR
                     RLMRAFPEKPHYGDHHGADRSEGTESPASSSKA"
     gene            1293..1493
                     /locus_tag="VIU37_05095"
     CDS             1293..1493
                     /locus_tag="VIU37_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013355.1"
                     /translation="MVGAYTPFEVEAERRREVLRDSMRDSRGVQPERDATRRDPGETD
                     ASLGRRLTEFANSLVNRVAQRV"
     gene            complement(1530..2021)
                     /locus_tag="VIU37_05100"
     CDS             complement(1530..2021)
                     /locus_tag="VIU37_05100"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6013356.1"
                     /translation="MNKIQMPDDFYDQTPEGNVLATEAVMNTIRTADLLFDQIGRLLR
                     PLNVSAAGGLVLGILRDHGPMSPSTLSDRLIVTRATVTGVLDSLERRGFVVRSANPAD
                     RRGQIAEITPAGLAVLQELRTLVHRHEKAWAGVLDDEELRTYIGLLHRIQDSVASLTA
                     EGD"
BASE COUNT          354 a          741 c          731 g          354 t
ORIGIN      
        1 gattcgtctg cctgcgactg tgacacccgg tcatcgatcg acgcgtcgtg accagccgac
       61 aaccgaaccc cagggcaccg tcagcagctc ggcgacctcg tcctcgagga gctccggtgc
      121 gatcagcgca caagcggcaa accgagcgag ccgtgcggct ccggctgcgg cctggggggt
      181 gacccgccag taaccgtcgt cgacgaccgg ctcgagaccg gccgccttgg cggcgcaatt
      241 gacccgctgc caggcgcgat cccgtgcggc cagccgcagc aagcgcaact cgggatcgcc
      301 attgagcgcg tcccggagca gttcccacgc gatgagtcgg gtgtcggcac ctgtccggtc
      361 aagggcatcg agacgggcga tctgttcgac cgtgaggagg cccgcgcgat ggatcgcaag
      421 ctccgcgccc aacgggagca gcgggctggg ccgagcaggt tcgagcgttt cccagccggg
      481 cttgagggtc acgtcgacat catcggcgga ccgacccgcc aggccatgac ccaatggtcg
      541 ggggtgtcgg cgcgatcagg ccttcgagct cgaggcgggg ctctcggtcc cctcgctgcg
      601 gtcggcgccg tggtggtcgc cgtagtgcgg cttctcgggg aacgcacgca tcagccggcg
      661 cagcaggcgg tggagttcct gccgttcagg ttcgctcagg actgacgcga acatcgcctc
      721 acgcttggcc tgcgtcccga cggtcgcatc ccaggccgca tggccggcct cggtcggctc
      781 gaccagggtc ccccggcgat cggtcggatc cggcagccga cggatcagtc cggccttctc
      841 gagtcgatcg agacgggccg tcatcgcccc gctcgacagg cgcatgtcct cggccagtcg
      901 tccggccgat cgctggtacg gcgaaccgta gctgcgcaac cggccgatca ggtggaaggc
      961 ccgccggtcg agcgcgtact gggcgagcgt ctcgtccatg gatcggtcga agctcttggc
     1021 caggccctgg atccgctcga cgatcccttc ggtcaacggg tcgaggtcgg ggatctccct
     1081 ggcccacaca gcgagcatgt cgtcgagccg atcggtctcc tgcgcgtcgc tgcccatggc
     1141 cggagtatcc cccgacaatc ggccgacgtc aagtatcttc atccgatatc tcttgacatc
     1201 gaacgatcta tgcgctagag tccgcatgta gttcgataca aagagtcttg aggtcgaatt
     1261 tcttcgacgg acgcgcagga agggatcggg tcatggtcgg ggcatacaca ccattcgagg
     1321 tcgaggccga gcggcgccgc gaggtcctcc gggattcgat gcgggactcc cgcggcgtgc
     1381 agccagagcg cgatgccaca aggcgcgacc cgggcgaaac cgacgcttcc ctcggtcgcc
     1441 gtctgaccga gttcgccaac agcctggtca accgagtcgc ccagcgcgtc taggcccgac
     1501 gaaccggatc gccccgagcg cctcgagcgt cagtcgccct ctgccgtcag cgaggccacg
     1561 gagtcctgga tccggtgcag gagtccgatg tacgtacgga gctcctcatc gtcgaggaca
     1621 ccggcccacg ccttctcgtg gcggtgcacg agggtccgta gctcctggag caccgccagc
     1681 ccggcgggcg tgatctctgc gatctgaccg cgccgatccg ccgggttcgc cgatcgcacg
     1741 acgaaccccc gtcgctccag cgaatcgagc acgccggtga cggtggcccg cgtcacgatc
     1801 agccggtcgc tgagcgttga cggcgacatc ggcccgtggt cgcgaaggat cccgaggacc
     1861 aggccgccgg ccgcgctgac gttgagcggg cgaaggagtc gcccgatctg gtcgaacagc
     1921 aggtcggccg tccggatcgt gttcatcacc gcttcggtgg ccagcacgtt cccttcgggc
     1981 gtctggtcgt agaagtcgtc gggcatctgg atcttgttca tcgccgacca tgatacgggt
     2041 attgacaatc aggtgcctaa ccatatagtt aggcgcctaa cgaccggcag gtgaccggcc
     2101 tactcggcag aggagcgtcc cgaccatggt caaggtgatc gtccagcacc gcgtcgacga
     2161 ctacgaccgc tggtacccgg
//
LOCUS       DATDDI010000355         5056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_694465, whole genome shotgun sequence.
ACCESSION   DATDDI010000355 DATDDI010000000
VERSION     DATDDI010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5056
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_694465"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIU37_05105"
     CDS             <1..324
                     /locus_tag="VIU37_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013357.1"
                     /translation="RALVLHAPDYNPAVFLTGRRSLLGYTGYIWAHGLPYTDREADIR
                     HIYAGDDGALQLIGRYGIDYILVSPLERAYQKAAGLAVNDAFFDQFTKVDQIGEYTLY
                     EVAKP"
     gene            305..2008
                     /locus_tag="VIU37_05110"
     CDS             305..2008
                     /locus_tag="VIU37_05110"
                     /inference="COORDINATES: protein motif:HMM:TIGR03663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase activity-associated protein Agl23"
                     /protein_id="HEY6013358.1"
                     /translation="MKSRSRRRGRLAGTDRPGAPGPIAPAADETGPATTTPPPGPAHT
                     GDRLLDWADRFFIPAALVILLVAAAIRLPELALNPFHHDEGVNGFFTTNLVRDGTYTY
                     DPANYHGPTLYYFALVSEILFGLTTEAMRLVPALFGILLVALVFPLRRYLGPVVTLTA
                     AALLALSPAEVYVSRYFIHEMLVASLSLALVVAAIFYLDRREPRFLLAGAVAAALLFA
                     TKETGIITVAVLLIAVVIAHVYVGLRHPQPRQGRRERPVPRRQSVWIDGVEYRAATDS
                     RPGGGNTPIWQSGIPTEHVAGAAVIFLVIYVLLYSSFFTNFPKGLTDSLATFTIWAQH
                     GESTQVQPFTRYLEWMIPLDLPILLLGVAGGLIVAIRARDRLSVTIGLWAAGITTAYS
                     LIQYKTPWIVVNMLIPLALLAGLAIAELWRSRLRVAAPVLVVVALAVSGYQAVDLNFN
                     RYDDQTEAYVYVHSTRDMLSLIDEIEATAARAGTGKETGIVFVTPDYWPLPWYFRDYP
                     RAGFFGQIVDTQEAMIVANVTQEAELAPKLAGRYDLVRQYNLRPGVDLALYVRTDIPK
                     A"
     gene            2011..3015
                     /locus_tag="VIU37_05115"
     CDS             2011..3015
                     /locus_tag="VIU37_05115"
                     /inference="COORDINATES: protein motif:HMM:TIGR00374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEY6013359.1"
                     /translation="MPARRSALLRLLVGVVISAIFLVVTLRNVDLGKAADAIGHAAPA
                     WLAIALVIVLIDLCLRALRWHVLLRAVEDPSAPPPPYRLAFGYLTLGFAANFVLPARL
                     GDIARAVLAADTFKVPRLSIFGTILIERVSDGLTFLGLAILSSLVVASASELRNLTVY
                     AIALVVAGLVAAAVGWLAITRSALASTRLAQAILGIVRRLSAGAGAFHHRGPAISFLA
                     LTALLATTATLVAWAVLQAVGVALNPIQTVLFLSGIALSLAIPAAPGAIGTYEFVGVA
                     IITGLGYTPEQGLATILLMRILTTFPPALIGLVSIWALHVRPGAIAESSTDAAAEPTP
                     "
     gene            3012..4142
                     /locus_tag="VIU37_05120"
     CDS             3012..4142
                     /locus_tag="VIU37_05120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013360.1"
                     /translation="MTAGFGRADWIRAARNPTWVDAILPTILLRGVILVFAVLAVVIV
                     KPDALPHGSLLGIWERWDAPHYFEVAQFGYGPPADPARIVIFPLTPAFIAIGSLVFRP
                     LVAGMLIAFAASLASAAGLYRLMRLDHGRQTARLGVLAMSVFPTAFALVAPYSEAIFL
                     AFAIWAFLFARTGRWPAAGFCVLFAGLARLQGVFILPALVVEYWLARRRVDRDAAWLL
                     LGFGGPLIYLAINALTFGDPFYFLGIQKTVFHVSTTDPWSALTSAFAGATAVQPTEFW
                     ATVYLAPFVAYVVLGLATVWTLIGKGGRPSYAVYTGLTFLSFATLTWPISLPRYLMGV
                     FPIFIATGQIARRPWLGPPILVGSTLLFGICLTLFTIGHWAF"
     gene            complement(4192..>5056)
                     /locus_tag="VIU37_05125"
     CDS             complement(4192..>5056)
                     /locus_tag="VIU37_05125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013361.1"
                     /translation="TGAWRARSAVRDALLFLAPAVIAVPFIADAVIQQGHRGAFRFVL
                     GWSEARFGDGPAAVAFFYVTNLGLPFLLAAVAVLLGRRMPAHRFLVAWMVALFLIPNL
                     VVASAVEFDMNKYFQIMWIAVCVLAAWLIRRWPRPVVATVILVSAISPVLVSVWQAWN
                     PALVLTTSQEAAARWIAHNTPDRSVFVTDAYVNSAVDLAGRLRISTFGPYAANLGYDP
                     DQRSADTKSVYCDGPATAARLMGTYGATYVLSSGGALDCGHDPTDFGSSPMFETVYDA
                     GGVEVWHLRGP"
BASE COUNT          667 a         1871 c         1666 g          852 t
ORIGIN      
        1 cgtgcactcg tgctccatgc gcccgactac aatccggcgg tcttcctcac cggccggcgc
       61 tcgctgctcg ggtacaccgg gtacatctgg gcgcacggcc tgccctacac cgatcgcgag
      121 gccgacatca ggcacatcta cgccggcgac gatggggcgc tccagctcat cggccggtac
      181 gggatcgact acatcctcgt cagcccgctc gagcgcgcct accagaaggc cgccgggctg
      241 gccgtcaacg acgcattctt cgatcagttc accaaggtcg accagatcgg cgagtacacg
      301 ctctatgaag tcgcgaagcc gtaggcgagg ccggctcgcc ggcacggacc gccctggggc
      361 gccgggcccg atcgcgccgg cggccgacga aaccggcccg gccacgacca cgccgccgcc
      421 gggccccgcc cacaccggcg accggctgct ggactgggcg gatcggttct tcatcccggc
      481 cgccctcgtg atcctcctgg tcgccgccgc gatccggctg ccggagctgg ccctcaatcc
      541 attccaccac gacgagggcg tcaacgggtt cttcaccacg aacctggtcc gcgacggcac
      601 gtacacctac gaccccgcca actaccacgg ccccacgctg tactacttcg cgctcgtctc
      661 ggagatcctg ttcggcctga cgaccgaggc gatgcggctg gtgcccgccc tgttcgggat
      721 cctgctcgtg gcgctcgtgt tcccgctgcg gcggtatctc ggcccggtgg tgacgctgac
      781 cgcggccgcg ctcctggcgc tgtcgccggc agaggtctac gtctcgcgct acttcatcca
      841 cgagatgctg gtggcctcgc tgtcgctcgc cctggtggtg gccgccatct tctatctcga
      901 tcggcgggaa cccaggttcc tgctcgccgg cgccgtggcc gccgcgctgc tgttcgccac
      961 caaggaaacc gggatcatca ccgtcgccgt cctgctgatc gcggtcgtca tcgcccacgt
     1021 ctacgtgggc ctgcgccacc cgcagccgcg ccagggcagg cgcgagcggc ccgtcccacg
     1081 ccgccaatcc gtctggatcg atggtgtcga gtaccgagcg gcgaccgata gccggcccgg
     1141 cggcggcaac acgccgatct ggcagagcgg catcccgacc gagcacgtcg ctggggccgc
     1201 ggtcatcttc ctggtgatct acgtcctgct ctactcatcg ttcttcacga acttcccgaa
     1261 gggtctgacc gactcgctgg cgaccttcac gatctgggcc cagcacggcg aatcgacgca
     1321 ggtccagccg ttcacccggt acctggagtg gatgatcccg ctggatctcc cgatcctcct
     1381 gctcggcgtg gccggcggcc tcatcgtggc gatccgggcg cgtgaccggt tgtcggtgac
     1441 catcggactg tgggccgccg gcatcacgac ggcgtactcc ctcatccagt acaagacgcc
     1501 gtggatcgtc gtgaacatgc tcatcccgct cgccctgctc gccggcttgg ccattgccga
     1561 gctgtggcga tcgcgcctac gtgtcgcggc gccagtcctc gtcgtcgtgg cactcgcggt
     1621 tagcggctac caggcggtcg acctcaactt caatcgctac gacgaccaga cggaggcgta
     1681 cgtctacgtc cattcgaccc gggacatgct gtcgctgatc gatgagatcg aggccacggc
     1741 cgcccgggcg ggcaccggca aggagacggg gatcgtgttc gtgacgccgg actactggcc
     1801 gctgccgtgg tacttccgcg actatccaag agcgggcttc ttcggccaga tcgtggacac
     1861 ccaggaggcg atgatcgttg cgaacgtgac ccaggaggcg gagctcgctc ccaagctcgc
     1921 gggtcggtat gacctggtcc gccagtacaa cctgcgacct ggcgtggacc tcgccctgta
     1981 cgtccggacc gacatcccga aggcgtagcg atgcccgcac gccgctccgc gctcctccgg
     2041 ctcctggtgg gggtcgtgat cagcgcgatc ttcctcgtcg tcaccctgcg caacgtcgac
     2101 ctgggcaagg ccgccgacgc gatcgggcac gcggcgccgg cctggctggc catcgccctg
     2161 gtcatcgtgc tgatcgacct gtgcctgcgg gcactccgct ggcacgtcct gctccgggcc
     2221 gtcgaggatc cgtccgcccc accgccgccg taccggctgg cgttcggcta cctcaccctc
     2281 ggcttcgccg ccaacttcgt gctcccggcg cggctcggcg acatcgcccg ggccgtcctc
     2341 gcggcggaca cgttcaaggt cccgcgcctg tcgatcttcg gcacgatcct gatcgagcgg
     2401 gtcagcgacg ggctgacgtt cctgggcctg gcgatcctgt cgagcctggt cgttgccagc
     2461 gcctcggagc tccgcaacct gaccgtctac gcgatcgccc tggtggttgc cggactggtc
     2521 gccgccgccg tcggctggct cgcgatcacc cggtccgccc tcgcgtcgac ccggctcgcg
     2581 caggcgatcc tcggcatcgt ccggcggctg tcggcgggcg ccggcgcctt tcatcaccgc
     2641 ggccccgcga tctcgttcct ggcgctcacc gcgctgctcg cgacgaccgc gacgctcgtc
     2701 gcctgggccg tgctgcaggc cgtcggcgtc gccctgaacc cgatccagac cgtcctgttc
     2761 ctgagcggga tcgcgctgtc gctggccatc ccggcggcgc ccggggcgat cgggacgtac
     2821 gagttcgtcg gggtggccat catcaccggc ctggggtaca cgccggagca gggcctggcg
     2881 acgatcctgc tgatgcggat cctgacgacc ttcccgccgg cgctcatcgg gctcgtctcg
     2941 atctgggccc tccacgtccg gcccggcgcc atcgccgagt cctcgacgga cgcagctgcc
     3001 gagccgacgc cgtgaccgca ggtttcggtc gggcggactg gatccgggcg gcgcgaaacc
     3061 cgacctgggt cgacgcgatc ctccccacga tcctcctccg cggcgtcatc ctcgtgttcg
     3121 ccgtcctcgc ggtcgtgatc gtcaagcccg acgcgctccc gcatggctcg ctgctcggga
     3181 tctgggaacg ctgggacgcc ccccactact tcgaggtcgc ccagttcggc tacggcccgc
     3241 cggccgatcc ggcgcgcatc gtcatctttc cgctgacccc ggcgttcatc gccatcggct
     3301 cgctcgtgtt ccgcccgctc gtggccggga tgctcatcgc cttcgccgcc tcgctggcgt
     3361 cggcggccgg gctctaccgg ctgatgcgcc tcgatcacgg gcggcagacc gcgcggctcg
     3421 gcgtgctggc gatgagcgtc ttcccgaccg cctttgcgct ggtcgccccg tactcggagg
     3481 cgatcttcct ggcattcgcg atctgggcgt tcctgttcgc gcggaccggg cgatggccgg
     3541 cggccgggtt ctgcgtgctg ttcgccggtc tcgcgcggct gcagggcgtg ttcatcctgc
     3601 cggccctcgt ggtggagtac tggctggctc gccgccgcgt cgatcgagac gccgcatggc
     3661 tcctgctggg ctttggcggc ccgctcatct acctcgcgat caacgccctg accttcgggg
     3721 acccgttcta cttcctcggg atccagaaga ccgtcttcca cgtctcgacg accgatccct
     3781 ggtcggcgct gaccagcgcc ttcgccggtg cgaccgccgt ccagccgacg gagttctggg
     3841 cgaccgtcta cctggccccg ttcgtcgcgt acgtcgtcct gggcctggcg accgtgtgga
     3901 cgctgatcgg caagggcggt cggccgtcct acgccgtgta cacggggctg acgttcctca
     3961 gcttcgcgac cctgacctgg ccgatcagcc tgccgcgcta cctgatgggc gtcttcccga
     4021 tcttcatcgc cacggggcag atcgcccgtc gcccctggct cgggcccccg atcctggtgg
     4081 gatcgacgct cctgttcggc atctgcctga cgctgttcac catcggccac tgggcgttct
     4141 agccctcggg cggccctccc cggccgggtc gtcgccgcgc cggcctccgg gtcatggccc
     4201 gcgcaggtgc cagacctcga cgccgccggc gtcgtagacc gtttcgaaca tcggactcga
     4261 cccgaagtcg gtcggatcgt gtccgcagtc gagcgccccg cccgacgaca ggacataggt
     4321 ggcgccgtac gtgcccatca gccgcgccgc ggtggccggg ccgtcgcagt agacggactt
     4381 cgtgtcggcg ctccgctgat ccgggtcgta gccgaggttg gccgcgtacg gcccgaaggt
     4441 ggagatccgg agccggcccg ccaggtcgac ggcgctgttg acgtaggcgt ccgtcacgaa
     4501 gaccgatcga tccggcgtgt tgtgtgcgat ccagcgcgcg gcagcctcct gggaggtcgt
     4561 caggacgagc gccgggttcc atgcctgcca gacgctgacc aggacgggcg agatcgccga
     4621 cacgaggatc acggtcgcga cgaccggtcg gggccagcgc cggatcagcc aggcggcaag
     4681 gacgcagacc gcgatccaca tgatctggaa gtacttgttc atgtcgaatt cgacggcgct
     4741 cgccaccacg agattgggga tcaggaagag ggcgaccatc caggcgacca ggaaccggtg
     4801 ggccggcatc cgccgcccga gcagaaccgc aacggccgcg agcaggaatg gcagcccgag
     4861 gttggtgacg tagaagaacg cgacggcggc cgggccgtca ccgaaccggg cctcgctcca
     4921 gccgagaacg aaccggaagg ctccccgatg gccctgctgg atcacagcgt cggcgatgaa
     4981 cggcacggcg atcacggcgg gggccaggaa caggagcgcg tcgcggacgg cgctccgcgc
     5041 ccgccaggca ccggtg
//
LOCUS       DATDDI010000356         3729 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_299041, whole genome shotgun sequence.
ACCESSION   DATDDI010000356 DATDDI010000000
VERSION     DATDDI010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3729
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299041"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1249
                     /locus_tag="VIU37_05130"
     CDS             <1..1249
                     /locus_tag="VIU37_05130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6013362.1"
                     /translation="EAAERYRRLLEPGVRLLAVSPSVAARLAGLLGIAPDAVGVLPNP
                     VDDGAFGLADPAARDRDEVLWVGALGEHKGIDVLLRAVARLRSGRPNLRLRLVGGERA
                     AGDLARWRALAAELGIGDAVAFDGWLDRPAVAAAMARAAAFAHSSPSETFGVVAAEAI
                     LSGLPVATRRSGGVPWVVELSGGFGAVAAGDDVAAFANAIERALDGPLAVTAVDARAR
                     LMAAIGTAAVTARTIEFYRELAGAEGVALPPADEPSGDAAPRAPRPRPIPSVLLATER
                     EQSIPRVAALADDLRASVTLVVPPQLEGATAQPNGPAARVRIVEAAPVRHERPPKGRS
                     PLARLRRATWKPPLTFEGELAAAVVRAVSEQRGARGPQDVVALDAPAAVVVSGTDARR
                     VRLAPGSLRWLADRWDAERTDRR"
     gene            complement(1246..2589)
                     /locus_tag="VIU37_05135"
     CDS             complement(1246..2589)
                     /locus_tag="VIU37_05135"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6013363.1"
                     /translation="MSEPAAEPPAPVSRPAAPAAPSASSAGDPHPRAVLLVANTAAPY
                     SRGLRVARSLAEAGWQVEIAAVSGDGRPETEHDGEVLIRRYRPSGPFSRWVGQPPPPR
                     PPTRLLRVLALNLDKVLKVVFWPLHVRAWWRTLRRDLPPADLYHAFGILTLPVALDLA
                     SAARRAGHRGAVVYDVIDAILDSNNYQRVPGPVLARYRRLEAGWVRRVQGVVTVNEAL
                     ADHCHRLWPFRERPTVLLNCQPRWTPPDHRPDLIREAAGLPSERRIVLFLGKLGRQRG
                     LEMAAEAVARLPDAALVMLGSVVNAEWDATLRARSADPRLAGRHVVLPAVHPDDVRAW
                     AASADVSIIAVPANSLNQRLSTPNKFWESLAAGTPVVIGRELEVMRAIVEADRLGAAA
                     DPLDPADLARAIGEVLDLPAEAYAALRDRCLAISSDRYNWETAVVPYLDLVGRLA"
     gene            complement(2586..>3729)
                     /locus_tag="VIU37_05140"
     CDS             complement(2586..>3729)
                     /locus_tag="VIU37_05140"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6013364.1"
                     /translation="AASPILGPSAGAPPARTPATSSSGPADSDSGADSGADDTDPGWA
                     HPAARDPGRLRGYVRRARIFLMIRSHRRRGLASSPPADVYHGMAYMGISVALALGRHH
                     RAKVVYDSRDIYMVAANLARLRGPIKAVLARLERGWARAADRVLTVNRPYAEELAQRF
                     GVEMPAIVMNCSYRYHPPTPAPRRFHEALGLDPATRVVLYQGGFSRGRGVEQLIQAIH
                     QVPNAVLAIMGYGALEADFRAAAAADEHRGLVHVLPAVPPTELLDWVASADVVGVLFQ
                     HDTLNNYLSTPNKFLEAMAAGVPTVCSDHPGMGPIARATGCGIPVDPSDIEAIAAAIR
                     SIVDAPPDERAATRARALAAAHEIYNWETQVQTLLDEYTRLTGRRW"
BASE COUNT          452 a         1344 c         1472 g          461 t
ORIGIN      
        1 cgaggcggcc gagcgctacc ggaggctcct cgagcccggc gtccgcctgc tcgcggtcag
       61 tccatcggtc gccgcgcgcc tcgcggggtt gctcgggatc gcgcccgacg cggtcggcgt
      121 gctcccgaac ccggtcgacg acggcgcctt cggcctggca gaccccgccg cgcgcgatcg
      181 cgacgaggtg ctgtgggtcg gtgcgctggg cgagcacaag ggcatcgacg tcctgctgcg
      241 agccgtggcc cggcttcgtt cggggcggcc gaacctgcgc ctccggttgg tcggcggcga
      301 gcgggccgcc ggcgacctgg cccgctggcg ggcgctggcg gccgagctcg ggatcgggga
      361 cgcggtggcg ttcgacggct ggctcgatcg gccggccgtg gcggcggcga tggcccgggc
      421 cgcggccttc gcccattcga gcccgtccga gacgttcggc gtcgtggccg cggaggcgat
      481 cctgtcgggc ctccccgtcg cgacccgccg gtcgggcggc gtgccctggg tcgtcgagct
      541 gtccggcggg ttcggcgccg tcgcggccgg cgacgacgtg gcggcgttcg cgaacgcgat
      601 cgagcgagcc ctggacgggc cgcttgccgt gacggcggtg gacgcccggg cccgactgat
      661 ggcggcgatc gggacggcgg cggtcaccgc ccggacgatc gagttctacc gcgagctggc
      721 cggggcggag ggcgtcgccc tgccgccggc cgacgagccg tccggtgacg ccgcaccgcg
      781 agccccgcga ccgcgaccga tcccgtcggt cctcctggcc accgagcgcg agcagtcgat
      841 cccgcgggtc gccgcgctgg ccgacgacct gcgggcatcg gtgacgctgg tggtcccgcc
      901 ccaactcgag ggcgcgaccg cccagcccaa cggaccggcg gctcgcgtgc ggatcgtcga
      961 ggccgccccg gtgcgacacg aacgcccgcc gaagggtcgc agcccgctcg cccggttgcg
     1021 gcgggccacc tggaagccac cgctcacctt cgagggggag ctggcggccg cggtcgtccg
     1081 cgcggtctcg gagcagcgcg gcgcccgagg gccgcaggac gtggtcgccc tcgacgcccc
     1141 ggcggccgtg gtcgtttcgg ggaccgatgc ccggcgcgtc cggctggcgc cgggaagcct
     1201 ccgctggctc gccgaccgct gggacgccga acggacggat cggcgctagg ccagccggcc
     1261 caccaggtcg aggtacggaa cgaccgccgt ctcccagttg taccggtcgc tcgagatcgc
     1321 caggcagcga tcgcggaggg cggcgtacgc ctcggcgggc aggtcgagga cctcgccgat
     1381 cgcccgcgcg aggtccgccg gatcgagcgg atcggccgcg gcgccgagcc ggtcggcctc
     1441 cacgatggcc cgcatcactt cgagctcccg cccgatgacc accggcgttc cggccgccag
     1501 gctctcccag aacttgttcg gggtcgacag gcgctggttc agcgagttcg ccggcacggc
     1561 gatgatcgag acgtccgccg atgccgccca ggcgcgaacg tcgtcggggt ggaccgccgg
     1621 cagcacgaca tggcgcccgg cgaggcgcgg atcggccgac ctcgcccgga gcgtcgcgtc
     1681 ccattccgcg ttgacgaccg atccgagcat gaccagcgcc gcgtcgggga gccgggccac
     1741 ggcttccgcg gccatctcga gccctcgctg ccgtccgagc ttgcccagga acagcacgat
     1801 ccgacgttcc gacggcaacc ccgcggcctc gcggatcagg tccggccggt ggtctggcgg
     1861 cgtccagcgt ggctggcagt tgagcaggac ggtcggccgc tcccggaacg gccagagccg
     1921 gtggcaatga tcggccagcg cctcgttgac ggtgacgacc ccctgcacgc gacggaccca
     1981 gccggcctcg agacgccggt agcgagccag gacgggcccc ggcacgcgct ggtagttgtt
     2041 cgagtccagg atggcgtcga tgacgtcgta gacgacggcg ccgcggtgcc cggcgcggcg
     2101 ggcggccgag gcgaggtcaa gcgcgaccgg cagcgtcagg atgccgaagg cgtggtagag
     2161 gtcggcgggt ggcaggtcgc gccggagcgt tcgccaccag gcgcggacgt ggagcggcca
     2221 gaacacgacc ttgagcacct tgtcgaggtt gagggcaagg acgcgcagca gcctggtcgg
     2281 cgggcgtggc ggcggcggct ggccgaccca gcgggagaac ggaccgctcg gccggtagcg
     2341 gcggatcagg acctcgccgt cgtgctcggt ctccgggcga ccgtcgccgc tcaccgcggc
     2401 gatctcgacc tgccatccgg cctctgccag gctcctcgcc acgcgcagtc cgcgcgagta
     2461 cggcgccgcg gtgttggcga cgagcagcac ggcccgcggg tgcgggtccc cggcggatga
     2521 cgccgaaggc gcggccggcg ccgcgggtcg ggagacgggc gccggcggct ccgcggccgg
     2581 ctcgctcacc agcggcgccc ggtcagccgg gtgtactcgt cgagcagcgt ctggacctgg
     2641 gtttcccagt tgtagatctc gtgggctgcc gcgagcgccc gggcgcgtgt cgcggcgcgc
     2701 tcgtccggcg gtgcgtccac gatcgaccgg atggcggcgg cgatcgcctc gatgtccgag
     2761 gggtcgacgg ggatcccgca gcccgtcgca cgggcgatcg ggcccatgcc ggggtgatcg
     2821 gagcagaccg tggggacacc ggcggccatc gcctcgagga acttgttcgg cgtcgacagg
     2881 tagttgttga gcgtgtcgtg ctggaacagg acgccgacga cgtccgccga cgcgacccag
     2941 tcgagcagct cggtcggcgg gacggccggc aggacgtgga cgaggccgcg gtgctcgtcg
     3001 gcggccgcgg cggcgcggaa gtccgcctcc agcgcgccgt agcccatgat cgcgagcacg
     3061 gcgttcggga cctggtggat cgcctggatc agctgctcca cgccccggcc gcgcgagaag
     3121 ccgccctggt acaggacgac gcgcgtcgcc gggtccaggc ccagcgcctc gtggaaccgt
     3181 cgcggcgccg gggtgggcgg gtggtagcgg taggagcagt tcatgacgat cgcgggcatc
     3241 tcgaccccga accgctgcgc cagctcctcg gcgtacggcc ggttgaccgt gaggacgcga
     3301 tccgcggcgc gtgcccagcc ccgctcgagc cgcgcgagca ccgccttgat cgggccgcgg
     3361 agccgcgcca ggttggcggc gaccatgtag atgtcgcgcg agtcgtagac gaccttggcc
     3421 cggtggtggc ggcccagcgc caacgccacc gagatgccca tgtaggccat cccgtgatag
     3481 acgtccgcgg gcggtgacga cgccaggccc cggcgacgat ggctccggat catcaggaag
     3541 atgcgggccc gccggacgta gccgcggagc cggccggggt cgcgggccgc ggggtgcgcc
     3601 cagcccggat ccgtgtcgtc ggcgcccgaa tcggcgcccg agtcgctgtc cgcggggccg
     3661 gacgaggagg tcgccggggt ccgggccggc ggcgcgcccg ccgacggtcc gaggatcggg
     3721 ctggcggcc
//
LOCUS       DATDDI010000357         2046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_652645, whole genome shotgun sequence.
ACCESSION   DATDDI010000357 DATDDI010000000
VERSION     DATDDI010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652645"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VIU37_05145"
     CDS             complement(<1..348)
                     /locus_tag="VIU37_05145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013365.1"
                     /translation="MSGSTVVVRRNGTRPPDRNGRTGDRAKRVLEAPRGRVIVEQRGR
                     DLINQPLLNKGTAFTDQERDSFSLRGLLPARVMTIEEQVALELEHVRRKTDDLERYIG
                     LAALQDRNETLFYR"
     gene            557..1078
                     /locus_tag="VIU37_05150"
     CDS             557..1078
                     /locus_tag="VIU37_05150"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEY6013366.1"
                     /translation="MSTPATLERPSPALLDWLASHHVEYEVHAHSPTFTARATARAEG
                     VDPRTFAKVVGVSSADGRRHLVVLDATDHLDLRKAREVIGSDDVRLLSEGELTELAPD
                     CQAGALPAVGALFGLTTYADYAVREDTDISFNAGSHSFSVRVERAGWERACGVVYGDL
                     ASESDSRPAWARS"
     gene            1116..1664
                     /locus_tag="VIU37_05155"
     CDS             1116..1664
                     /locus_tag="VIU37_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013367.1"
                     /translation="MTRSTTIVWIDARQAVIVRWQDSEARLVRIDSDVPAHHRATGHV
                     RHDASVRPGGGVPKAAGEPHRLEHLAQFLDDIAGRLPDDDDLLILGPGTVHERLHRDV
                     VDHDRHHGLDRLVTSEASPRLSDRQLVARLRHLTGADAPRQTVGAYRWSEATSHRGSG
                     GTVVEPRRVVAKPVRRRDGGAP"
     gene            1661..>2046
                     /locus_tag="VIU37_05160"
     CDS             1661..>2046
                     /locus_tag="VIU37_05160"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6013368.1"
                     /translation="MNATPSPAAPMRVLVAIDGSAPSARAVDLVCGVPWPDGTTIVVA
                     QAVESGEGLYGGLWPAVAMVELGKLEAEVRSAADQDVTEAAERLMRPGLAVDTAVLPG
                     RPATVIGERARAMGADLIVVGSRGHGR"
BASE COUNT          279 a          743 c          739 g          285 t
ORIGIN      
        1 gcggtagaac agcgtctcgt tgcggtcctg cagggcggcc aggccgatgt accgctcgag
       61 atcgtcggtc ttgcgccgga cgtgctcgag ctccagcgcg acctgctcct cgatggtcat
      121 gacccgggcc ggcagcaggc cgcgaagcga gaacgagtcg cgctcctggt cggtgaacgc
      181 ggtgcccttg ttgagcagcg gctggttgat caggtcgcgc ccgcgctgct cgacgatcac
      241 ccggccacgg ggggcttcga gcacgcgctt cgcccggtca ccggtgcgtc cgttgcgatc
      301 cggcggccgg gttccgttgc gtcgtacgac cacggtcgac ccgctcatcg gcgcgatctt
      361 cgtccgttcc acggcggcga gcgagagcca tgggacctgc cttggcgggc cgcttggacc
      421 gatcgcctgg gccaacccga tgggctcgcc ggggacgggc cgttcggcac gcgccatcgc
      481 aaccaatggc cgatggatcg tcccgcccgt tgcgcgaccg tgatggtgca cccatacggt
      541 gctggaggca cgcgccatga gcactcccgc gacgctcgaa cggccatctc ccgccctgct
      601 cgactggctc gccagtcacc acgtcgaata cgaggtccat gcgcacagcc cgacgttcac
      661 cgcgcgcgcc acggcccggg ccgaaggggt cgacccgcgc accttcgcca aggtcgtcgg
      721 cgtctcgagc gcggacggcc ggcgccacct ggtcgtcctg gatgcgaccg atcacctcga
      781 cctccgcaag gcccgggaag tgatcgggtc ggacgacgtg cgactgctga gcgaaggcga
      841 gctgaccgag ctcgccccgg actgccaggc cggggccctg ccggcggtcg gcgccctgtt
      901 cggcctgacg acctacgccg attacgcggt tcgcgaggac accgacatca gcttcaacgc
      961 cgggagccac agcttcagcg ttcgcgtgga gcgggcgggc tgggagcggg cgtgcggcgt
     1021 cgtctacggc gatctcgcat cggagagcga cagccggccc gcatgggccc ggtcctgaac
     1081 cggcgccccg agacgccaga acgatgggag acggcatgac tcgatcgacc acgatcgtct
     1141 ggatcgatgc gcgccaggcg gtcatcgtcc gctggcagga ttccgaggcc cggctcgtgc
     1201 ggatcgactc cgacgtgccg gcgcaccatc gcgcgaccgg ccacgtccgg cacgacgcgt
     1261 cggtcaggcc cggcggcggc gtgcccaagg cggccgggga gccgcaccgg ctggagcatc
     1321 tcgcccagtt cctggacgac atcgccgggc gcctgccgga cgacgacgat ctgctcatcc
     1381 tcgggcccgg aaccgtccac gaacgcctgc accgcgatgt ggttgatcac gatcgacacc
     1441 acgggctcga ccggctggtc acgtccgagg cctcgccgcg cctgtccgac cgccagctgg
     1501 tggcacggct gcgccacctg accggcgcgg acgcgccgcg ccagaccgtc ggcgcgtatc
     1561 ggtggagcga ggcgacctcc catcggggca gcggggggac ggtggtcgag ccgcgccggg
     1621 tcgtcgccaa gccggtgcgc cggcgcgatg gaggtgcacc atgaacgcca cgccgtctcc
     1681 cgccgcaccg atgcgcgtcc tcgtcgcgat cgacggctcg gcgccgtcgg cccgcgccgt
     1741 ggacctggtg tgcggcgtgc cctggccgga cggcaccacg atcgtcgtgg cccaggcggt
     1801 cgaatccggc gagggcctgt acggtgggct ctggccggcg gtggccatgg tcgagctcgg
     1861 gaagctcgag gccgaagttc gctccgccgc cgatcaggac gtcaccgagg ccgccgaacg
     1921 gctgatgcgt cccgggttgg ccgtcgacac ggccgtcctg cccgggcgtc ccgcgaccgt
     1981 catcggcgaa cgggcccggg cgatgggggc cgacctcatc gtcgtcggca gccgcggcca
     2041 tggccg
//
LOCUS       DATDDI010000358         1719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_507346, whole genome shotgun sequence.
ACCESSION   DATDDI010000358 DATDDI010000000
VERSION     DATDDI010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507346"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..741)
                     /locus_tag="VIU37_05165"
     CDS             complement(<1..741)
                     /locus_tag="VIU37_05165"
                     /inference="COORDINATES: protein motif:HMM:NF014042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconeogenesis factor YvcK family protein"
                     /protein_id="HEY6013369.1"
                     /translation="MNLRRWLTPGIGIKRWLGLVFAGLLLLALAVAHVVRQVTQQSHP
                     TGLAGAVLDAITLQFLPYTLRGLIVGSLGVALVVIGGVRVVRAVTDPLRTPDEDQSLA
                     EVIYQKRFLARGPRIVAIGGGTGLSTFLRGMKEHTSNLTAIVTVADDGGSSGALREEL
                     GLPPVGDIRNCIAALADAEPLMSELLGYRFPGGIRVEGGPVETEPGGLGGHPIGNLLL
                     AALTALEGGDFEEGVRRMNRVLAVRGKVV"
     gene            complement(738..>1719)
                     /gene="rapZ"
                     /locus_tag="VIU37_05170"
     CDS             complement(738..>1719)
                     /gene="rapZ"
                     /locus_tag="VIU37_05170"
                     /inference="COORDINATES: protein motif:HMM:NF015620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEY6013370.1"
                     /translation="RRLTAMASEDGIPLEDGIPPEDGLPLDGSETVPRPEPGKDHPHV
                     AIVSGLSGGGKTAAAKLFEDLGYVVVDNLPGELLPNLADLVATDPTRYARVAIVLDVR
                     AGNAESAYRATRGALEGRGIRPQVFFLEARDEVLIRRFSETRHRHPLGEGRGIAAAIV
                     DERRLLDPVRAEADVVVDTSDLSLRELRERMFARIGDLEPDRMAIQLVSFGYKFGVPL
                     ESDLVFDTRFLRNPYYVAELRDHSGLTEPVRSFVLEQPAARRFLDLVEPLLAFSIPAF
                     ADEGKSRLTIAIGCTGGQHRSIVLAEELAAWLRGQGFAPISVFHRELQRP"
BASE COUNT          253 a          592 c          648 g          226 t
ORIGIN      
        1 cacgaccttg ccccgcaccg cgagaacgcg gttcatgcgc cgcacgccct cctcgaagtc
       61 gccgccctcg agcgcggtga gcgcggcgag caggaggttg ccgatgggat ggccaccgag
      121 accgcccggc tccgtctcga cggggccgcc ctcgacccgg atcccgcccg ggaagcggta
      181 gcctaggagc tcgctcatca gcggctcggc gtcggcgagc gccgcgatgc agttgcggat
      241 gtcgccgacc ggcggcaggc cgagctcctc gcgcagggcg cccgacgagc cgccgtcgtc
      301 ggcgacggtc acgatcgcgg tcaggttgct ggtgtgctcc ttcatgcccc gcaggaaggt
      361 cgagagcccg gtcccgccgc cgatcgcgac gatccgcggg ccacgggcga ggaaccgctt
      421 ctgatagatg acctcggcca gcgactggtc ctcgtccggg gtcctgagcg ggtccgtcac
      481 ggcccgcacg acgcgtaccc cgccgatgac cacgagggca acgccaagcg acccgacgat
      541 gagcccgcgg agggtgtacg gcaggaactg gagcgtgatc gcgtcgagga cggctccggc
      601 cagcccggtc gggtgggact gctgggtcac ctggcggacc acgtgggcca cggccagcgc
      661 cagcagcagg agtccggcga agacgaggcc cagccagcgc ttgatcccga tccccggggt
      721 gagccagcgg cggaggttca cgggcgctgg agctcgcggt ggaagacgct gatgggcgcg
      781 aagccctgtc cccggagcca ggccgccagc tcctctgcca ggacgatgga gcggtgctgg
      841 ccgccggtgc agccgatcgc aatcgtcagg cggctcttgc cctcgtcggc gaaggccggg
      901 atcgagaagg ccaggagcgg ctcgacaagg tcgaggaagc gccgcgccgc gggctgctcc
      961 aggacgaacg accggaccgg ctcggtgagc cctgagtggt cgcgaagctc ggccacgtag
     1021 tacgggttgc ggaggaagcg ggtgtcgaag acgaggtccg actcgagggg cacgccgaac
     1081 ttgtagccga agctcaccag ctggatcgcc atccggtcgg gctcgaggtc gccgatccgg
     1141 gcgaacattc gctcccggag ctcccggagc gacaggtcgg aggtgtcgac gacgacgtcc
     1201 gcctcggccc ggacgggatc gagcagccgg cgctcgtcga cgatcgccgc ggcgatgccc
     1261 cggccctcgc cgagcggatg gcggtggcgc gtctcggaga agcgccggat caggacctcg
     1321 tcgcgggcct ccaggaagaa gacctggggc cggatcccgc ggccctcgag ggctccgcgg
     1381 gtggcccgat aggcgctctc ggcgttgccc gcccggacgt cgaggacgat ggccacccgg
     1441 gcgtagcggg tggggtccgt cgccacgagg tcggccaggt tcgggaggag ctctcccgga
     1501 aggttgtcga cgacgacgta gccgaggtct tcgaagagct tcgccgccgc ggtcttcccg
     1561 cctccggaca gcccgctgac gatggcgacg tggggatgat ccttcccggg ctcgggccgt
     1621 ggaacggtct cgctgccgtc cagcgggagg ccgtcctcgg gcgggatccc gtcctcgagg
     1681 ggtatgccgt cctcgctcgc catggccgtc agtctacgc
//
LOCUS       DATDDI010000359         1766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_673691, whole genome shotgun sequence.
ACCESSION   DATDDI010000359 DATDDI010000000
VERSION     DATDDI010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673691"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..834
                     /locus_tag="VIU37_05175"
     CDS             <1..834
                     /locus_tag="VIU37_05175"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY6013371.1"
                     /translation="PLMLTDRSFDANNQIHYNPAGNVGLTGNRILVNGVPQPYFVVGD
                     RRYRLRILNASNARSYTLALSNGQAFTQIGTDSGLLPAPVKRTKIEIAPAERVDVVID
                     FAKKLGQKIVLQNVAASGSLGQLMQFRVARDLTDNSSIPSKLRALPKLDATSAVTRTF
                     VLSRSRTTGQWLINGLAYDPNRIDAAPKLGTTETWIFKNGSSSNHVIHLHDVDQQLVS
                     RNGVPARPWERMKESWNLAIGETIVLKVKFTDNLGKFVFHCHILEHEDDAMMAQMEVV
                     P"
     gene            919..1758
                     /locus_tag="VIU37_05180"
     CDS             919..1758
                     /locus_tag="VIU37_05180"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6013372.1"
                     /translation="MTTTEQTADTPARGRYADVNGLHLYYETHGTGRPLMLLHGGLMS
                     SDTFGPVIPALVAGGHQVIAPDLQGHGRTADIDRPIDPRLMAGDIAALIEHLGLDRPD
                     VVGYSLGGGVAMHLAFQRPELLGRLVAVSANIRRDAIPPEMLAQQGQVSAAAVPFMKE
                     TPMWQLYERVAPRPEDFGRLLDKLGAFMATDFDFSDEVRGLQVPTMIVAADADMAPPS
                     HYVDVFKLLDGGLRDGGWMGEGRPKGGHALAILPGLTHYNVFASPLFAKATLTFLDQV
                     TSP"
BASE COUNT          309 a          651 c          558 g          248 t
ORIGIN      
        1 ccgctgatgc tgaccgaccg ctccttcgac gccaacaacc agatccacta caacccggcc
       61 ggcaacgtcg ggctgaccgg caaccggatc ctggtcaacg gcgtcccgca gccctacttc
      121 gtggtcggcg accgcaggta ccgcctccgg atcctcaacg cgtcgaacgc gcgctcctac
      181 acgctcgccc tcagcaacgg ccaggcgttc acccagatcg gcaccgattc gggcctgctg
      241 ccggcgcccg tgaagcgcac gaagatcgag atcgcgccgg cggagcgggt cgacgtcgtc
      301 atcgacttcg cgaagaagct cggccagaag attgtcctgc agaacgtcgc cgcgagcggc
      361 tcgctcggcc agctcatgca gttccgggtc gccagggatc tgaccgacaa cagctcgatc
      421 ccgtcgaagc tccgggcgct cccgaagctg gacgcgacgt cggcggtgac gcggacgttc
      481 gtgctcagcc ggtcacggac gaccggccag tggctgatca acggcctcgc ctacgatccc
      541 aaccggatcg acgccgcgcc caagctcggc accaccgaga cctggatctt caagaacggc
      601 tcgagctcca accacgtcat ccacctccac gacgttgacc agcagctggt cagccgcaac
      661 ggcgtgcccg ccaggccgtg ggagcggatg aaggagtcat ggaacctggc gatcggcgag
      721 acgatcgtgc tcaaggtcaa gttcaccgac aacctgggca agttcgtctt ccactgccac
      781 atcctcgagc acgaggacga cgcgatgatg gcccagatgg aggtcgtccc ctagcggcca
      841 cgaccgatga gttccccgaa cgtcggcggt ctacagggca tcgaagcacc cgaagcgaac
      901 cgatgaggag caccgaacgt gaccaccacc gagcagaccg ctgacacccc ggccaggggc
      961 cggtacgccg acgtcaacgg cctccacctc tactacgaga cccacggcac cgggcgaccg
     1021 ctgatgctgc tgcacggcgg cctgatgtcg agcgacacgt tcgggccggt gatcccggcg
     1081 ctggtcgcgg gcgggcacca ggtcatcgcc cccgacctcc agggccacgg ccggaccgcc
     1141 gacatcgatc ggcccatcga ccctcggttg atggccggcg acatcgcggc actgatcgag
     1201 cacctcgggc tcgacaggcc cgacgtcgtg ggctactcgc tcggtggcgg tgtcgcgatg
     1261 cacctcgcgt tccagcgccc cgagctgctc gggcggctgg tcgccgtctc ggcgaacatc
     1321 cgccgcgacg cgatcccgcc cgagatgctc gcccagcagg gccaggtcag cgccgcggcc
     1381 gtcccgttca tgaaggagac gccgatgtgg cagctctacg agcgtgtcgc gccgcggccc
     1441 gaagacttcg gccggctgct ggacaagctg ggcgcgttca tggccaccga cttcgacttc
     1501 agcgacgagg tccgcgggct ccaggtcccg acgatgatcg tcgccgccga cgccgacatg
     1561 gcgccgccca gccactacgt cgacgtcttc aagctgctcg acggcggcct ccgggatggc
     1621 ggctggatgg gcgaggggcg gccgaagggc ggtcacgcgc tggcgatcct gcccggcctg
     1681 acccactaca acgtcttcgc ctcaccactg ttcgccaagg ccaccctcac cttcctcgac
     1741 caggtcacgt cgccgtagcg gcgcag
//
LOCUS       DATDDI010000360         2396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_715417, whole genome shotgun sequence.
ACCESSION   DATDDI010000360 DATDDI010000000
VERSION     DATDDI010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_715417"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..810
                     /gene="pdxS"
                     /locus_tag="VIU37_05185"
     CDS             <1..810
                     /gene="pdxS"
                     /locus_tag="VIU37_05185"
                     /inference="COORDINATES: protein motif:HMM:TIGR00343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEY6013373.1"
                     /translation="VTPDQAKIAEDAGAVAVMALERVPADIRKAGGVARMSDPSMIEG
                     IMNAVSIPVMAKARIGHFVEAQVLEALGVDYIDESEVLTPADESNHIDKHAFKVPFVC
                     GCRNLGEALRRINEGAAMMRTKGEAGTGNIVEAVRQLRDVLAEIRRLQGMREDELFVA
                     AKELAAPYELVRQVAADGRLPVVNFVAGGISTPADAALVMQLGAEGVFVGSGIFKSED
                     PARMANAIVQATTFFDDPKKIAEVSKGLGAPMRGIALEEIPDQERLAVRGW"
     gene            856..1482
                     /gene="pdxT"
                     /locus_tag="VIU37_05190"
     CDS             856..1482
                     /gene="pdxT"
                     /locus_tag="VIU37_05190"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR03800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HEY6013374.1"
                     /translation="MLALQGAFREHLDTLHAIGVEGVRVREPADLDGVSGLILPGGES
                     TTMRQLIDRWGLHGPILDLADRGAPIFGTCAGMIVLAREIAGGEPPILPLLDITVERN
                     AFGRQLDSFEGELAVPVLGATPVHGVFIRAPIVDRVGPDVDVLARLDDGRVVAVRQRN
                     IIATAFHPELAGETRFHRLVATMAAEHDDPGEGSGRRPYPTRRGRPDA"
     gene            1479..>2396
                     /locus_tag="VIU37_05195"
     CDS             1479..>2396
                     /locus_tag="VIU37_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013375.1"
                     /translation="MTVLRAPRSAGKVRPARLTDLAALGELSRLCQSDSAETRSLGLP
                     VNGPPIGVFSLFRLPLGAFRPNDLMYVYDEQGHIAGLVRVERESTRDEWTIVELDAVG
                     LEDAGDIRYRLVQQLLREAAKRGAARFHVACADADGNVELLMQAGFMRYGEERILFRA
                     GDTALPPPWPDDRAAERGIRPTGGLDAIALARLYGQVTPTPVARLEAFRLADWERQGP
                     HWRVPRSSLTPILRFADVEGFVQAAPDGGPDGTLLDAFLQIGVAKEDQPHYLKVLARP
                     EADITDLIDFGLGVIAARTTRGGDRRHDRG"
BASE COUNT          343 a          867 c          866 g          320 t
ORIGIN      
        1 gtcacgcccg accaggccaa gatcgccgag gacgccggtg ccgtcgcggt catggccctc
       61 gagcgcgttc ccgccgatat ccgcaaggcc ggcggcgtcg cgcgcatgag cgacccgtcc
      121 atgatcgagg ggatcatgaa cgccgtgtcc atcccggtga tggccaaggc tcgcatcggc
      181 cacttcgtgg aagcccaggt cctggaggcg ctcggcgtcg actacatcga cgagtccgag
      241 gtcctgacgc cggccgacga gtcgaaccac atcgacaagc acgccttcaa ggtcccgttc
      301 gtgtgcggct gccgcaacct cggcgaggcg ctccggcgga tcaacgaggg cgccgcgatg
      361 atgcgcacca agggcgaggc cgggaccggg aacatcgtcg aggccgtccg ccagctgcgc
      421 gacgtcctcg ccgagatccg ccgcctgcag gggatgcgcg aggacgagct cttcgtcgcg
      481 gccaaggagc tcgcggcacc ctacgagctc gtcaggcagg tggccgccga cggccggctc
      541 cccgtggtga acttcgttgc gggcgggatc agcacgccgg cggacgcggc gctggtgatg
      601 cagctgggcg ccgagggcgt gttcgtcggc tcgggcatct tcaagagcga ggacccggcc
      661 cggatggcca acgcgatcgt ccaggcgacg accttcttcg acgacccgaa gaagatcgcc
      721 gaggtctcca aggggctggg ggccccgatg cgtggcatcg cgctcgaaga gatcccggac
      781 caggagcgac tcgccgtccg cggctggtag gcggccacga ccccggccgc gacccgtccg
      841 cacatgagga tcggcgtgct cgccctgcag ggggcgtttc gcgaacacct cgacacgctc
      901 cacgcgatcg gcgtggaggg tgtccgcgtg cgcgagccgg ccgacctcga cggcgtgagc
      961 gggttgatcc tgccgggcgg ggagagcacc accatgcgcc agctgatcga tcggtggggc
     1021 ctccacgggc cgatcctcga cctggccgac cgcggcgcac cgatcttcgg gacgtgcgcc
     1081 gggatgatcg tgctggctcg cgagatcgcc ggcggcgagc cgccgatcct gccgctgctg
     1141 gacatcaccg tcgagcgcaa cgccttcgga cgccagctcg actcgttcga gggcgagctg
     1201 gcggtgcccg tgctcggcgc caccccggtc cacggcgtgt tcatccgggc gcccatcgtc
     1261 gatcgggtcg ggccggacgt cgacgtcctc gcgcgactcg acgacggccg ggtggtggcc
     1321 gttcgccagc ggaacatcat cgccaccgcc ttccacccgg agctcgccgg cgaaacgcgg
     1381 ttccaccggc tcgtggcgac catggcggcc gaacacgacg acccgggcga gggctcgggg
     1441 cgccgaccgt acccgaccag gcgcgggagg ccggacgcat gacggtcctg cgcgcgccac
     1501 gcagcgccgg gaaggttcgt cccgcgcgcc tgacggacct cgccgcgctc ggggagctgt
     1561 cgcgcctgtg ccagtcggac tcggccgaga cgcgatcgct cgggctcccg gtcaacggtc
     1621 cgccgatcgg cgtgttcagc ctgttccggc tcccgctcgg ggcgttccgg cccaacgacc
     1681 tgatgtacgt ctacgacgag cagggccaca tcgccggcct ggtccgggtc gagcgggaat
     1741 cgacgcgcga cgagtggacg atcgtggagc tcgacgccgt cggactggag gacgcgggag
     1801 acatccgata ccggctcgtg cagcagctgc tgcgcgaggc ggcgaagcgc ggagcggccc
     1861 gcttccacgt ggcctgtgcc gacgccgacg gcaacgtgga gctgctgatg caggccgggt
     1921 tcatgcgcta cggcgaggaa cggatcctgt tccgcgccgg ggacaccgcc ctgccgcccc
     1981 cctggccgga cgaccgcgcc gccgagcgcg gcatccgccc gacgggcggg ctcgatgcca
     2041 tcgccctggc ccggctctac gggcaggtga cgcccacgcc ggtcgctcgc ctcgaggcgt
     2101 tccggctggc cgactgggag cgccagggtc cccactggcg cgtgccgcgc tccagcctca
     2161 cgccgatcct gcgcttcgcg gacgtggagg ggttcgtgca ggcggcgccg gacggcggcc
     2221 cggacggcac cctgctcgac gccttcctcc agatcggcgt ggccaaggag gaccaacccc
     2281 actacctcaa ggtgctcgcc cgacccgaag ccgatatcac cgacctgatc gatttcgggc
     2341 tcggggtgat cgccgcccgg accacccgtg ggggcgatcg ccggcacgac cgtggc
//
LOCUS       DATDDI010000361         2069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_195279, whole genome shotgun sequence.
ACCESSION   DATDDI010000361 DATDDI010000000
VERSION     DATDDI010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195279"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..795
                     /gene="recF"
                     /locus_tag="VIU37_05200"
     CDS             <1..795
                     /gene="recF"
                     /locus_tag="VIU37_05200"
                     /inference="COORDINATES: protein motif:HMM:TIGR00611.1"
                     /note="All proteins in this family for which functions are
                     known are DNA-binding proteins that assist the
                     filamentation of RecA onto DNA for the initiation of
                     recombination or recombinational repair; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HEY6013376.1"
                     /translation="AMDQLAAQRAGAYLRDLATYTRTLQQRNSLLRAIREEGASRAEL
                     RFWDGAFLDSGAAIVTERRRLLEVLAGPLAAAHAEIAPDEAATARLTLAYATNAPARP
                     GESARDALARRLAETAEKEVWNGSTLIGPHRDDLVFELAGRDLASFASRGQQRTAILA
                     LKLAELDLLTELDGRPPLLLLDDVFSELDPERRSHLVRRIAALPQAFVTTTTLDDLDP
                     ALRAIATAWEVQAGPRGAVLIGEVRNEAGPDGPAGSPGSGGFGAVR"
     gene            792..1121
                     /locus_tag="VIU37_05205"
     CDS             792..1121
                     /locus_tag="VIU37_05205"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HEY6013377.1"
                     /translation="MTTRRRPMVRLGELIPDAARALGLEDELRLSRAIATFEAIVAER
                     VPAAAGACRVVRLDGFALVVEADAPIVAQELRMRGPELLSAFAAAPGGVGARELRVHV
                     RPGGRRV"
     gene            1153..>2069
                     /locus_tag="VIU37_05210"
     CDS             1153..>2069
                     /locus_tag="VIU37_05210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013378.1"
                     /translation="MAVRLQLKLGVVTEHDRLADSPDTLVVVEPSVGSVARSKGHLYL
                     LVTSRVVTRHALEATRLAAETIRNEYYYDESAGIRVCLQKAIATANKRLAHQADRLGL
                     KSTDGGGPIGVGVAVVRANEMYVATVGPAEAYLIRQARLSTLPDPHRERGLPSPDLEP
                     DVWRGEVSVGDSLVLISPNVISKLGADELKDAMLTLHPQSAMEHLHHRFVAADGTGSD
                     GAIAFEATEVSSTAKARTLVPVRPSAPLAGAPDRSPIPLADNVQAAGLAVSAAAGNAR
                     VAAGGAVERAVAWAQGLMPQRKPAYRRVTP"
BASE COUNT          269 a          789 c          740 g          271 t
ORIGIN      
        1 gcgatggacc agctggcggc gcagcgcgcg ggcgcctacc tccgcgacct cgccacgtac
       61 acccggacgc tccagcagcg gaacagcctg ctgcgggcga tccgggaaga gggcgcctcg
      121 cgtgccgagc tgcgtttctg ggacggggcg ttcctggatt cgggggcggc catcgtcacc
      181 gaacgccggc gcctgctgga ggtcctggcc ggaccgctgg ccgcggccca cgccgagatc
      241 gcaccggacg aggccgccac cgcgcgattg acgctcgcct acgcgaccaa cgcgccggcc
      301 cgcccgggcg agtccgcccg cgatgcgctg gcccggcgcc tggcggagac cgccgagaag
      361 gaggtctgga acggctccac cctgatcggg ccgcaccgcg acgacctggt cttcgagctg
      421 gcgggccggg acctggcgag cttcgcgtcg cgcggccagc agcggaccgc gatcctggcg
      481 ctcaagctgg ccgagctgga cctcctgact gagctcgacg gccgtccgcc gctcctgctc
      541 ctggacgacg tgttctccga gctcgatccg gagcggcgct cgcacctcgt caggcggatc
      601 gcggcgttgc cccaggcgtt cgtgaccacg accacgctcg acgacctgga tccggcgctc
      661 cgggccatcg ccacggcctg ggaggtccag gccggccctc gtggcgccgt gctcatcggc
      721 gaggtccgga acgaggcggg cccagacgga cccgccggat ctcccggttc cggcggcttc
      781 ggagccgtcc ggtgacgacc cgccgacggc cgatggtccg gctcggcgag ctcatcccgg
      841 atgcggcacg cgcgctcggt ctcgaggacg agctgcggct atcgcgcgcc atcgcgacct
      901 tcgaggcgat cgtggcggaa cgcgtcccgg cggccgccgg cgcctgccgc gtggtccggc
      961 tggacggctt cgcgctggtc gtggaggccg atgcgccgat cgtcgcccag gagctccgga
     1021 tgcgcgggcc ggagctcctg tcagcgttcg ccgcggctcc cggcggcgtc ggcgcgcgag
     1081 agctgcgcgt ccacgtccgg cccgggggtc gccgcgtata atccgcctcc cgcctgatca
     1141 cgaaaggctc ggatggccgt tcgactccag ctcaagctcg gtgtcgtcac cgagcacgac
     1201 cgactcgccg actcacccga caccctcgtg gtcgtcgaac cgagcgtcgg gtcggtggcg
     1261 cgttccaagg gccacctcta cctcctggtg acgtcccggg tcgtcacgcg ccacgcgctg
     1321 gaagcgactc gcctcgccgc cgagacgatc cgcaacgagt actactacga cgagtcggcc
     1381 gggatccggg tctgcctcca gaaggccatc gccaccgcga acaagcggct tgcccaccag
     1441 gccgaccggc tcgggctcaa gtccaccgac ggaggcggac cgatcggcgt cggcgtggcg
     1501 gtcgtccggg cgaacgagat gtacgtggcc accgtcgggc cggccgaggc ctacctgatc
     1561 cgccaggccc ggctgtcgac cctgcccgac ccgcaccgcg agcgcggcct gccgtcaccc
     1621 gacctggagc ccgacgtctg gcggggcgag gtgtcggtcg gcgattcgct cgtgctgatc
     1681 tccccgaacg tcatctccaa gctgggcgcc gacgagctca aggacgcgat gctgacgctc
     1741 catccgcagt cggccatgga gcacctgcac caccggttcg tggcggccga cggcaccggg
     1801 agcgacggtg cgatcgcctt cgaagcgacc gaggtgtcgt cgacggccaa ggcccggacg
     1861 ctcgtgccgg ttcggccctc cgcgccactg gccggcgccc cggaccgctc cccgatcccg
     1921 ctcgccgaca acgtccaggc cgccgggctc gccgtaagcg ccgccgcggg caatgcccgg
     1981 gtggccgccg gcggggccgt ggagcgggcc gtggcctggg cccagggcct gatgccgcag
     2041 cgaaagccgg cctaccggcg cgtgacccc
//
LOCUS       DATDDI010000362         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_8087, whole genome shotgun sequence.
ACCESSION   DATDDI010000362 DATDDI010000000
VERSION     DATDDI010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8087"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VIU37_05215"
     CDS             complement(<1..761)
                     /locus_tag="VIU37_05215"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013379.1"
                     /translation="MNDKEPAAGGASNPFGGFSIALLDDASAPATATGGPSTIRSAGD
                     RVDAKVVIVGSGPAGLTAAIYAARANLEPVVLAGSAPGGQLMLTSDVENFPGFVEPIQ
                     GPDLMAAMRGQAERVGARFVDVDIERVDFSARPFRLFARGTEYRAQAVIIATGASALW
                     LGLDSETRLRGRGVSACATCDGFFFRDREIAVVGGGDTAFEEATYLTRFATKVHLLHR
                     RDTFRASKIMVDRALANPKIEVHLNAAVEEVLGDT"
     gene            complement(805..>1513)
                     /locus_tag="VIU37_05220"
     CDS             complement(805..>1513)
                     /locus_tag="VIU37_05220"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6013380.1"
                     /translation="LGYMAAHSSQARLGLMVGGVHYRHPGLWVKATTTLDVLSGGRAW
                     LGIGAAWNAEESHGLAFPFPPLGERFELLEETLQIAHAMFEGERGSEGTFDGRHYHAA
                     RLLNSPQSLSRPRVPIMVGGGGEKKTLRLVAQYADACNVFGSPEAIARKYAILDRHCE
                     VVGRDPDEIERSTLQDVRISRDGRSGAASPGQVVDQFGDLADVGVQHVIVSLDRVHVP
                     DQLDLLGQAVLPQVHAL"
BASE COUNT          223 a          536 c          545 g          209 t
ORIGIN      
        1 ttggtatcgc ccaggacctc ctccaccgcg gcgttcaggt ggacctcgat cttcgggttg
       61 gccaaggccc ggtcgaccat gatcttcgag gcgcggaacg tgtcgcgccg gtggagcagg
      121 tggaccttgg tggcaaagcg ggtcaggtag gtcgcctcct cgaaggccgt gtccccgccg
      181 ccgaccacgg cgatctcgcg atcgcggaag aagaacccgt cgcaggtggc gcaggccgac
      241 acgccgcgac cgcgcagccg ggtctcgctg tcgagcccga gccacagcgc cgaggccccg
      301 gtcgcgatga tcaccgcctg ggcgcggtac tcggtgccgc gggcgaacag ccggaagggc
      361 cgagcggaga agtcgacccg ctcgatgtcg acgtcgacga accgggcgcc gacgcgctcc
      421 gcctggccgc gcatcgcggc catcaggtcc ggcccctgga tcggctcgac gaagcccggg
      481 aagttctcga cgtcgctcgt cagcatcagc tggccgcccg gcgccgatcc cgccagcacc
      541 accggttcga gattggcgcg tgcggcgtag atcgccgccg tgagcccggc cgggcccgac
      601 ccgacgatca cgaccttggc gtcgacgcgg tcgcccgcgc tccggatggt ggacggcccg
      661 ccggtcgcgg tggccggcgc gctggcatcg tcgagcaggg cgatgctgaa gccgccgaac
      721 gggttggagg ccccgccggc cgcaggttcc ttgtcgttca tcgatggcat cgtatcacgg
      781 atgcgatact ccctgggggt atggctacag ggcgtggacc tggggcagga cggcctgccc
      841 gagcaggtcc agctggtccg ggacatggac gcgatccagc gacacgatga cgtgctggac
      901 gcccacgtcg gcgaggtcgc cgaactggtc gacgacctgg cccggggaag ccgcgccgga
      961 ccggccgtcg cgcgagatcc ggacgtcctg cagcgtggac cgctcgatct cgtcggggtc
     1021 acgtcccacg acctcgcaat gccggtccag gatcgcgtac ttgcgggcga tcgcctcggg
     1081 cgacccgaag acgttgcacg cgtccgcgta ctgggcgacc agccggagcg tcttcttctc
     1141 gccgccgccg ccgaccatga tcggcacgcg cggacgcgac aacgactgcg gcgagttcag
     1201 cagccgcgcc gcgtggtagt gccggccgtc gaacgtgcct tcgctgccgc gctcgccctc
     1261 gaacatggcg tgggcgatct ggagcgtctc ctcgagcagc tcgaaccgct cgccgagcgg
     1321 cgggaacggg aatgccaggc cgtgcgattc ctcggcgttc caggccgcgc cgatgcccag
     1381 ccaggcccgg ccgccagaca gcacgtcgag ggtggtcgtc gccttgaccc acagcccggg
     1441 atggcgatag tggacgccgc cgaccatcag cccgaggcgc gcctgcgagg aatgcgcggc
     1501 catgtagccg agg
//
LOCUS       DATDDI010000363         4297 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_174365, whole genome shotgun sequence.
ACCESSION   DATDDI010000363 DATDDI010000000
VERSION     DATDDI010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4297
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174365"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VIU37_05225"
     CDS             <1..959
                     /locus_tag="VIU37_05225"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013381.1"
                     /translation="RNAVDGISFEVRPGEFFALLGPNGAGKTTTLSILTTTLTPTAGR
                     ALIDGLDVVADAAAVRQRVGIIFQRPSLDKNLTGEENVRFHAILYGLYPYAPGYRLMA
                     AAYRRQVEDWSALLGLGRDIFRPVRTYSGGMLRKLEIVRSLVHRPRVLFLDEPTTGLD
                     APSRRALWTYLRDVRATHETTIVLTSHYLEEAEQADRICVVDAGRIIATGSPAELTAA
                     LANEYLIVDATDRVRLRAELVEHGLDPSGDGPFRIDVSTADTHRVLRSIETPLTLVRT
                     HAPSLEDAYLEIVSRAELCDEAVGRVGETDPAGTPAEDDVDG"
     gene            952..1797
                     /locus_tag="VIU37_05230"
     CDS             952..1797
                     /locus_tag="VIU37_05230"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013382.1"
                     /translation="MAETALPREVATRSGRPLPRRWRAELSAVAVIAHRDFVKLLRDR
                     LRLFSELAFPLVLVLLLGPALQSGFGAPGGLDLTTFVFSGVLAQTIWQSSVLGLVSLI
                     ADREEDFSQEIFVSPVSRYAIVAGKIIGEALVALPTGLGIVVVGVLIGVPLSPLVLVV
                     LVPISLAIAIYGGAFGLLILSNISSQRTANQIFPFVLLPQFFLAGVFNPIHDLPLPLA
                     VLSALSPLRYAVELMRNVMYGLQPAVPAPDMTPAPVNAAVMAVVFVAFLAAGTVLFVR
                     AERNR"
     gene            complement(1858..2856)
                     /locus_tag="VIU37_05235"
     CDS             complement(1858..2856)
                     /locus_tag="VIU37_05235"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEY6013383.1"
                     /translation="MATQRFESSVTAVSWIPSEAISGPSKIPFELGVTHYDEPPPDHL
                     EDLEQLRTSDRFREANELRGFIEVEDGRIVRAGHLGQGHIGATTVRVGPAALRFPAVH
                     LTDIQVEPEVTGTSARFVQTVGGRMGLPTPRPVPHPPFVQFWPSIAWTTLALTINADG
                     TSSHELVGASPFPRHWIYDNEGRLVQKSGSIDFGTWFNNSFGQRTPWGEQDSPAVVAE
                     VESALERSLSSAIMRGGAKPKIRAITEGENLVRQGEAGTEVFLILDGIFVVEVDDKPV
                     AEVGPGAVVGERSGLRNGTRTATLWARTKGRVASVPPDALDTQALGSLAATHQREG"
     gene            3022..3441
                     /locus_tag="VIU37_05240"
     CDS             3022..3441
                     /locus_tag="VIU37_05240"
                     /inference="COORDINATES: protein motif:HMM:NF039682.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6194 family protein"
                     /protein_id="HEY6013384.1"
                     /translation="MSSSTLPTGPDPEAITQVIRERYPETFVAEALGATFFSLDERHW
                     PNFATIVTTDEHDDGAPSDLARPGVFRLNIGVGRETFERLVGSAGTPDYAAFDRILPH
                     PVYAKQRWISILNPSDATFRDVVLPLIAEAHDRLVAR"
     gene            complement(3445..3936)
                     /locus_tag="VIU37_05245"
     CDS             complement(3445..3936)
                     /locus_tag="VIU37_05245"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013385.1"
                     /translation="MPRPYPCLWFDGRAEEAARFWTGIFPDSHVDKVGPAAADTPSGK
                     KGDVITVEFTLDGERFVGLNGGPEFTFDEAISFVIDCDDQAEVDRYWDALVEGGGEHG
                     PCGWLKDRFGVSWQVVPKRLYALMEGDDREGAQRAVEAMLQMSRLDIAALEGAYRGTP
                     LRA"
     gene            complement(4079..>4297)
                     /locus_tag="VIU37_05250"
     CDS             complement(4079..>4297)
                     /locus_tag="VIU37_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013386.1"
                     /translation="VGTASSTILDPVARGSVAAGVATAARDSLSAGLGVTYWLMLAAA
                     GLACLLAIRTMPNVALGHELAAAGSAAE"
BASE COUNT          605 a         1544 c         1466 g          682 t
ORIGIN      
        1 accggaacgc cgtggacggc atcagcttcg aggtccgacc cggcgagttc ttcgcgctcc
       61 tcggtcccaa cggggccggc aagacgacca cgctctcgat cctgaccacg acgctcaccc
      121 cgaccgccgg ccgcgcgctc atcgacggac tggacgtcgt ggccgatgcc gcggccgttc
      181 ggcagcgggt cgggatcatc ttccagcggc cgagcctgga caagaacctc acgggcgagg
      241 agaacgtgcg gttccacgcg atcctctacg ggctctaccc gtatgcgccg ggctaccggc
      301 tcatggccgc ggcctaccgt cgccaggtcg aggactggtc ggcgttgctc ggcctcggcc
      361 gcgacatctt ccgcccggtg cggacgtatt cgggcggcat gctgcgcaag ctcgagatcg
      421 tccggagcct ggtccaccgg ccacgggtcc tgttcctcga cgagcccacc accgggctgg
      481 acgcgccgag ccggcgcgcg ctgtggacgt acctgcgcga cgtccgggcg acccacgaaa
      541 cgacgatcgt gctcacctcg cactacctgg aggaggccga gcaggccgac cgaatctgcg
      601 tcgtggacgc gggcaggatc atcgcgaccg gctcaccggc cgagctcacc gcggcgctgg
      661 cgaacgagta cctcatcgtc gacgcgaccg accgcgtgcg gttgcgggcg gagctggtgg
      721 agcacggcct tgatccctcg ggcgacgggc cgttccggat cgacgtgtcc actgccgaca
      781 cccaccgcgt cctgcgctcg atcgagacgc cgctcacgct cgtccggacg catgccccgt
      841 cgctcgaaga cgcctatctg gagatcgtca gccgggcgga gctctgtgac gaggccgtcg
      901 gccgcgtcgg cgagacggat cccgccggga ccccggccga ggacgatgtc gatggctgag
      961 acggcgcttc cgcgcgaggt cgcgacccgg tccggccgtc ccctcccccg tcgctggcgg
     1021 gcggagctgt cggcggtggc ggtcatcgcc catcgcgact tcgtcaagct gcttcgggac
     1081 cggctgcggc tcttctccga gctcgccttc ccgctggtgc ttgtcctgct gctcggcccg
     1141 gcgctccagt cggggttcgg cgccccgggc gggctcgacc tgaccacgtt cgtgttcagc
     1201 ggcgtcctgg cgcagacgat ctggcagtcg tcggtcctgg ggctcgtgtc gctgatcgcg
     1261 gatcgcgagg aggacttcag ccaggagatc ttcgtgtcgc cggtctcgcg ctacgcgatc
     1321 gtcgccggca agatcatcgg cgaggcgctc gtcgccctgc cgaccgggct cgggatcgtg
     1381 gtcgttgggg tgctgatcgg cgtgccgctg tcgccgctgg tcctggtcgt gctcgtcccg
     1441 atctcgctcg cgatcgcgat ctacggcggc gccttcggcc tgctgatcct ctcgaacatc
     1501 tcgagccagc ggacggcgaa ccagatcttc ccgttcgtcc tgctgccgca gttcttcctg
     1561 gccggcgtgt tcaaccccat ccacgacctg ccgctgccgc tggcggtgct gtcggccctg
     1621 tcgccgctgc gctacgcggt ggagctgatg cggaacgtga tgtacggcct gcagcccgcg
     1681 gtgccggcac ccgacatgac gccggcaccg gtcaacgccg cggtcatggc ggtggtgttc
     1741 gtcgcgttcc tcgcggcggg cacggtcctc ttcgtccggg ccgaacggaa ccgctgaacc
     1801 ggcaccgcgc cggcgctcgc cgggccgggc gcagcccggc cgcccggttc tggtggccta
     1861 tccctcgcgc tggtgcgtcg ccgccaggct gccgagcgcc tgcgtgtcga gcgcgtcggg
     1921 tggaacgctc gccacgcggc ccttggtgcg ggcccacaac gtcgccgttc gtgtgccgtt
     1981 ccggaggccc gaccgctcgc cgaccaccgc gcccggtccg acttccgcga ccggcttgtc
     2041 gtcaacctcg acgacgaaga tcccgtcgag gatgaggaac acctcggtgc cggcctcgcc
     2101 ctgccgtacc aggttctcgc cctcggtgat ggcgcggatc ttcggcttgg cgccgccgcg
     2161 catgatcgcg ctcgagagcg agcgctcgag tgccgactcg acctcggcca cgaccgccgg
     2221 cgaatcctgc tcgccccacg gcgttcgctg gccgaacgag ttgttgaacc acgtcccgaa
     2281 atcgatcgag cccgacttct ggacgagccg tccctcgttg tcatagatcc agtgacgggg
     2341 aaacgggctc gcgccgacga gctcgtggct cgaggtgccg tccgcgttga tcgtcagggc
     2401 gagcgtcgtc cacgcgatcg acggccagaa ctggacgaac ggcggatgcg ggacgggccg
     2461 gggcgtgggc aagcccatcc tgccgccgac cgtctgcacg aagcgcgccg aggtgccggt
     2521 cacctcgggc tccacctgga tgtcggtcag gtggacggcg ggaaatcgga gggctgccgg
     2581 cccgacgcgg accgtcgttg cgccgatatg gccctggccg agatggcccg cgcggacgat
     2641 ccggccgtcc tccacctcga tgaacccgcg cagctcgttt gcctcgcgga accggtcgct
     2701 ggtccggagc tgctcgaggt cctcgaggtg gtcgggcggc ggctcgtcgt agtgcgtgac
     2761 gccaagctcg aacgggatct tggacgggcc gctgatggcc tcggagggga tccaggacac
     2821 ggcggtgacg gacgattcga agcgctgggt ggccaagggg acgacacctc gtgagcgact
     2881 ggcagagacc ccggcagttt cccagtatgg cgatgccacg ccccgagtgc ccgcgcgatg
     2941 cggcaggtgc gccccgtcgg ccgttcctag agatcaggca ggcgaaacct gggcttgaca
     3001 tgcagaatgt atggccgagg catgagttct tccacgttgc cgaccgggcc cgacccggag
     3061 gcgatcaccc aagtgatccg ggagcgctac cccgagacct tcgtcgccga ggccctcggt
     3121 gccacgttct tctcgctcga cgagcgacac tggccgaact tcgcgacgat cgtcacgacc
     3181 gacgagcacg acgacggcgc accgtcggac ctggcgcggc ccggcgtgtt ccgcctgaac
     3241 atcggggtcg ggcgggagac gttcgaacgg ctggtcggct cggcgggaac gccggactac
     3301 gccgcgttcg accggatcct cccccacccc gtctacgcga agcagcgctg gatctcgatc
     3361 ctcaacccga gcgacgcgac gttccgtgac gtggtcctgc cgctcatcgc cgaggcccac
     3421 gatcgactcg tcgctcgctg agcattaggc gcggagtggc gtacctcgat aggcgccttc
     3481 gagcgccgcg atatccagcc tggacatctg gagcatcgcc tcgacggctc gctgggcgcc
     3541 ctcgcggtcg tcgccctcca tcaacgcata gagccgcttc gggacgacct gccacgagac
     3601 accgaagcgg tccttgagcc agccgcacgg accgtgctcg ccgccgccct cgacgagggc
     3661 atcccagtag cggtccacct cggcctgatc gtcgcaatcg atcacgaacg agatcgcttc
     3721 gtcgaaggtg aactccgggc cgccgttgag cccgacgaag cgttcgccgt cgagcgtgaa
     3781 ctccacggtg atcacgtcac ccttcttgcc gcttggggta tcggcggccg cgggccccac
     3841 cttgtcgaca tggctgtccg ggaagatccc ggtccagaaa cgggcggcct cctcggcccg
     3901 gccatcgaac cagagacacg gatacgggcg cggcatggca ttcctccgtc gtcggtcgcg
     3961 ttgcgattcg atgatcagac tgccccgggc gcaggaactc atcgctgagc ggacctgctg
     4021 acgttccggg gatcgctgag gctgcccaat ggcacatgtt gccgcggcgt ctccacggtc
     4081 attcggcggc ggagccggcc gccgcgagct cgtggccgag cgccacattg ggcatcgtcc
     4141 ggatggcgag caggcacgcc agcccggccg ccgccaacat cagccagtag gtcacgccga
     4201 gaccggccga cagcgagtct cgagcggccg tggccacccc ggccgccacg ctcccccgcg
     4261 cgacgggatc gagaatcgtc gacgacgccg tgcccac
//
LOCUS       DATDDI010000364         2230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_632286, whole genome shotgun sequence.
ACCESSION   DATDDI010000364 DATDDI010000000
VERSION     DATDDI010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632286"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VIU37_05255"
     CDS             complement(<1..195)
                     /locus_tag="VIU37_05255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013387.1"
                     /translation="MFGQSGTSHSLALRRGVLLAFGTAAISGLSVYLNSFGVKAVSDA
                     AVYTTAKNGVAAIVLVALALA"
     gene            complement(214..468)
                     /locus_tag="VIU37_05260"
     CDS             complement(214..468)
                     /locus_tag="VIU37_05260"
                     /inference="COORDINATES: protein motif:HMM:TIGR00074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEY6013388.1"
                     /translation="MCIAYPGQVLEIDNGMALVETDQRRRRASLLLVPETAVGDWVVV
                     SAGTVLRVLDPEEANEIRTMLDEAARADAALRGVTPPDGG"
     gene            complement(522..1052)
                     /locus_tag="VIU37_05265"
     CDS             complement(522..1052)
                     /locus_tag="VIU37_05265"
                     /inference="COORDINATES: protein motif:HMM:TIGR00072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protease"
                     /protein_id="HEY6013389.1"
                     /translation="MTRALLARRARPPRHAAAVAVEVLVCGSPDRGDDGAPMAVMGRL
                     REQLPPDVTMRAVGMLDVDDLLSVPPGAGVVIVDAATGIEPGSIVDLALNGLIGRSDG
                     VHPRSSHALTLPEVVGLAEMLRGRPLPGRIVAIGGSHFGLGSSFSRPVTAALDPLGEA
                     IVQAVASVRPPAVGAA"
     gene            complement(1049..>2230)
                     /locus_tag="VIU37_05270"
     CDS             complement(1049..>2230)
                     /locus_tag="VIU37_05270"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEY6013390.1"
                     /translation="APRYFEQLVIGRTPDEVIDIVARICGICPIAYQMTAVHAFEHGL
                     GIEVDPQIRALRRLMYCGEWIESHALHIYLLHLPDFLGYASALELAKDHRAAVEAGLT
                     LKKAGNQLVELIGGRAIHPVSVRVGGFSRTFRRSEIGAIRGQMTEALDIARQTVDLVA
                     GLEPPTFRREARLVSLRHADEYPMNEGRIVSSDGLDIAATDWLTEFQESQVSWSHALQ
                     SRDRTGRPYLLGPSSRVILAGDRLHPLAAAALAATGLTEEIRTNPYRSILARAIELVD
                     ATAEAIEIIDAYEPPARAATPWTPGPATAAWATEAPRGLIFHAYELDQHGLVKSARIV
                     PPTSQNQAGIEADLASFAPQVLDLPMDQATHRIEQLVRSYDPCISCATHFLNLSVEDL
                     S"
BASE COUNT          335 a          757 c          828 g          310 t
ORIGIN      
        1 cgccagggcg agcgccacga gcacgatcgc ggcgacgccg ttcttggcgg tcgtgtagac
       61 cgccgcgtcc gagacggcct tcaccccgaa cgagttcagg tagacggaga gtccgctgat
      121 cgcggccgtc ccaaaggcga ggagcacgcc tcgccgaagc gcaaggctgt gtgacgttcc
      181 ggattggcca aacatgatca gcttccctct gcttcagcca ccatcgggtg gagtgacgcc
      241 tcgcagcgcg gcatcggccc gcgccgcctc atcgagcatg gtccggatct cgttggcctc
      301 ctcggggtcg aggacgcgca gaacggtccc ggcggatacc acgacccagt caccaacggc
      361 ggtctccggg acgagcagga gcgacgcccg gcgtcgtcgc tggtccgtct cgacgagcgc
      421 catgccgttg tcgatctcga ggacctggcc gggataggcg atgcacatga ccggaggata
      481 cgccgctcgg caacgccggc gggacgatcc gggcgcgcat ctcaggcggc gccgacggcc
      541 ggcggccgga cgctggccac ggcctggacg atcgcctcgc cgagcgggtc gagggcggcc
      601 gtcaccggcc ggctgaacga cgaacccaag ccgaagtggg atccgccgat cgccacgatc
      661 cgcccgggca gcggccggcc acggagcatc tccgcgaggc cgacgacctc gggcagcgtc
      721 agcgcgtggg acgagcgcgg gtggacgccg tcggagcggc cgatcaatcc gttgagggcc
      781 aggtcgacga tcgacccggg ctcgatgccg gtggcggcgt cgacgatcac gacgccggcg
      841 ccgggcggga ccgacagcag gtcgtccacg tcgagcatgc cgaccgcgcg catcgtgacg
      901 tccggcggca gctgctcgcg caggcggccc atgacggcca tgggcgctcc gtcgtcgcca
      961 cggtcaggcg agccgcagac gagcacttcg acggcgaccg cggcagcgtg ccgcggcggc
     1021 cgggcccgtc gcgccaggag ggcccgggtc atgacagatc ttcgacgctc agattgagga
     1081 agtgcgtggc gcaactgatg cacgggtcgt aactccggac cagctgttcg atcctgtggg
     1141 tcgcctggtc catcgggagg tcgaggacct gcggcgcgaa ggacgcgagg tccgcctcga
     1201 tgccggcctg gttctggctg gtcggcggga cgattcgggc gctcttgacc agcccgtgct
     1261 ggtcgagctc gtaggcatgg aagatgaggc cgcgcggcgc ctcggtcgcc cacgcggccg
     1321 tggcgggccc gggcgtccac ggggtggcgg ccctggccgg cggttcgtac gcatcgatga
     1381 tctcgatcgc ctccgcggtc gcgtcgacga gctcgatcgc ccgagccagg atgctccgat
     1441 acgggttggt ccggatctcc tcggtcaggc cggtcgcggc gagggctgcg gccgccagcg
     1501 ggtggagccg gtcgccggcg aggatgaccc gggacgacgg accgagcagg tacgggcgac
     1561 cggtgcgatc gcgcgactgg agcgcatgcg accacgacac ctgcgactcc tggaactcgg
     1621 tcagccagtc ggtcgcggcg atgtccaggc cgtcactgga cacgatccgg ccctcgttca
     1681 tcgggtactc gtcggcgtgc ctgagcgaca cgagccgcgc ctcgcggcgg aaggtcggcg
     1741 gctccaggcc ggccaccagg tccaccgtct ggcgggcgat gtcgagcgcc tcggtcatct
     1801 ggccgcggat cgcgccgatc tcgctgcgcc ggaaggtgcg cgagaacccg ccgacccgga
     1861 ccgacaccgg atggatcgcc cggccgccga tcagctcgac cagctggttc ccggccttct
     1921 tgagggtcag tcccgcctcg accgcggctc ggtggtcctt ggcgagctcg agcgcgctgg
     1981 cgtagccgag gaagtcgggc aggtggagca ggtagatgtg gagggcgtgg ctttcgatcc
     2041 actcgccgca atacatgagt cgacgcagcg cgcggatctg cggatcgacc tcgatcccga
     2101 gaccgtgctc gaaggcgtgg accgcggtca tctggtacgc gatcgggcag atcccgcaga
     2161 tccgggcgac aatgtcgatg acctcgtcgg gcgtgcggcc gatgaccagc tgctcgaagt
     2221 aacggggcgc
//
LOCUS       DATDDI010000365         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_361767, whole genome shotgun sequence.
ACCESSION   DATDDI010000365 DATDDI010000000
VERSION     DATDDI010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361767"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /locus_tag="VIU37_05275"
     CDS             <1..704
                     /locus_tag="VIU37_05275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013391.1"
                     /translation="SATEWAGDRAQILVEELEPGVPGPGASAPDEPVTSSPGAVIVDP
                     APSCPPYASGDPGVTNGTVEPDGGPTSGGGSGSSDGSGVTDGSTGTGGAPAAGSDGST
                     GVKEPEPSAIAVEPAPSPIAVPDPGTVTDPGASVDIDPGFGGKPVPSDPCAERMYAVD
                     QGDTAGGAEIYPPKAGEAAAEHVASASNPNAPFVALGLLLLTVALVAVATLRRRQAGS
                     PIAERPSEGPGPTPR"
     gene            complement(691..1479)
                     /locus_tag="VIU37_05280"
     CDS             complement(691..1479)
                     /locus_tag="VIU37_05280"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY6013392.1"
                     /translation="MPDAPPLVRIETADGIATITLDRPAALNALTIPMKQELLAAFRS
                     VERDRTVRAVILTGAGRAFCAGQDLRERLEPGAPSLGEELRERYNPIVRSMRSLPKPI
                     IGAINGVAAGAGASLAFACDLRIAADTASFVLAFGRLGLIPDSGATWLLPRLVGPSRA
                     MAMALVNEPVAPAEAERIGLVSRIVPGETLLEEARALARRVVESAPLGVALTKRALNA
                     AFDRDFEAALAYEAYLQDLAGRSADHAEGIAAFTEKRPPRFSGE"
     gene            complement(1472..>1732)
                     /locus_tag="VIU37_05285"
     CDS             complement(1472..>1732)
                     /locus_tag="VIU37_05285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013393.1"
                     /translation="ATRILLPEVRAYLAARLGREGRVLVGLPERHLLVAGTLRGDDPE
                     FATLFADFVGARAEGADEPIDRRLFELVQGDLVAFHPRRPDA"
BASE COUNT          236 a          640 c          655 g          201 t
ORIGIN      
        1 tctcggcgac cgagtgggcc ggggaccgtg cccagatcct cgtcgaggag ctcgaaccgg
       61 gcgtccccgg gccaggcgcc agcgcaccgg acgagccggt gaccagcagc cccggagccg
      121 tcatcgtcga cccggccccc agctgccctc cctacgcgtc gggcgatccg ggagtgacca
      181 acgggacggt cgagccggat ggcggcccga cgtccggcgg cggctccggc tcgagcgacg
      241 gctccggcgt gaccgatggc tcgaccggca ccggaggcgc gccggcggcc ggcagcgacg
      301 gctcgacggg cgtgaaggag cccgagccga gcgcgatcgc ggtcgagccg gcgccgagcc
      361 cgatcgcggt gcccgatccc ggcacggtca ccgacccggg cgcgagcgtc gacatcgacc
      421 cgggcttcgg cggcaagccg gtcccgagcg atccctgcgc cgagcggatg tacgccgtcg
      481 accagggcga cactgccggc ggcgcggaga tctatccgcc gaaggcgggc gaggcggccg
      541 ccgagcacgt ggccagcgcg tcgaacccga atgcgccgtt cgtggcgctc ggccttctgc
      601 tgctcaccgt ggcgctggtc gcggtggcca cgctccggcg acggcaggca ggaagcccga
      661 tcgccgagcg gccgtccgag ggacccgggc ctactccccg ctgaaccgcg gtgggcgctt
      721 ctcggtgaag gccgcgatgc cctccgcgtg gtccgcgctt ctgccggcca ggtcctggag
      781 gtaggcctcg taggcgagcg ccgcctcgaa gtcgcggtcg aaggccgcgt tgagcgcccg
      841 cttcgtcaac gcgacgccca gcggggcgct ctcgacgacc cgccgcgcga gggcccgggc
      901 ctcttccagg agggtctcgc ccggcacgat gcgagacacg aggccgatcc gctccgcctc
      961 ggcgggggca accggctcgt tgacgagcgc catcgccatc gcccgtgacg gcccgacgag
     1021 ccgcggcagg agccaggtcg cgccgctgtc cgggatgagc cctagccgcc cgaaggcgag
     1081 cacgaagctc gccgtgtccg ccgcgatccg caggtcgcag gcgaaggcca gcgaagcgcc
     1141 cgcgcccgcg gcgacgccgt tgatcgcgcc gatgatcggc ttggggaggc tccgcatcga
     1201 ccggacgatc gggttgtagc gctcgcggag ctcctcgccg agcgacggcg cgcctggctc
     1261 gagccgctcg cggaggtcct ggccggcgca gaacgcccgg cccgcgccgg tgaggatgac
     1321 cgcccggacg gtccgatctc gctcgaccga ccgaaaagct gcgagcagct cctgcttcat
     1381 cgggatcgtc agggcgttga gggccgccgg ccgatcgagg gtgatcgtcg cgatcccgtc
     1441 ggcggtctcg atcctgacga gcggtggcgc gtcaggcatc cggccgtcgc ggatggaagg
     1501 ccacgaggtc gccctggacg agctcgaaga gccgtcggtc gatcggctcg tcggcacctt
     1561 cggcgcgggc cccgacgaag tcggcgaaca aggtcgcgaa ctcgggatcg tcaccccgga
     1621 gcgtgcccgc cacgaggagg tgccgttccg gcagcccgac gaggacgcgg ccctcgcgcc
     1681 cgagccgcgc cgcgaggtac gcccggacct cgggtagcag gatccgggtc gc
//
LOCUS       DATDDI010000366         1881 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_340830, whole genome shotgun sequence.
ACCESSION   DATDDI010000366 DATDDI010000000
VERSION     DATDDI010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340830"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /gene="pth"
                     /locus_tag="VIU37_05290"
     CDS             complement(<1..494)
                     /gene="pth"
                     /locus_tag="VIU37_05290"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:TIGR00447.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEY6013394.1"
                     /translation="MKVVVGLGNPGSQYARTRHNIGWQVVDRLADRAGWAGRGRQRDA
                     SSVVMGRYDGIDLTLVKPLTYMNDSGLAVRKVLARASAPLADLLVVADDFALPFGKLR
                     FRESGSHGGHNGLRSIIDELGTEKVARLRVGIGEPGRGAIDHVLSRFATDERARLPIL
                     LDAAA"
     gene            complement(646..1206)
                     /gene="ybeY"
                     /locus_tag="VIU37_05295"
     CDS             complement(646..1206)
                     /gene="ybeY"
                     /locus_tag="VIU37_05295"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEY6013395.1"
                     /translation="MSRSIYLGPWRVDVTIRDGIAAPVPTAALARAMARAAEAAGAPR
                     PASLGLILTDDAELASLNEAHLGKSGPTDVLSFPLLAPESFPAHGGGMARSEPPVAPT
                     AVFALPPGRRPSLGDVVISVERAIEQAIEGRGGQTGDVRWKPGDELRLLATHGTLHLC
                     GWDHAEPTEEAAMRGLESTLRAAGRR"
     gene            complement(1203..>1881)
                     /locus_tag="VIU37_05300"
     CDS             complement(1203..>1881)
                     /locus_tag="VIU37_05300"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HDIG domain-containing metalloprotein"
                     /protein_id="HEY6013396.1"
                     /translation="VGNLAERAAEAIGADPLVTRVAAYYHDIGKLANPLAFIENQAGG
                     ENIHDQLDPEVSAGILKQHVVDGIDLAYKAHLPKALIAYIPQHHGTAIMSYFYARAKD
                     LAGPGATVDERRFRHSGPKPQTREAALIMLADGVEASVRSLAARDEPAIRAMVSRIID
                     ERIGDGQFDECDLTLRDLERIREAFVGQLLGMYHTRIAYPQNTVVELESRRAAAGRAG
                     GGGGSAS"
BASE COUNT          251 a          679 c          687 g          264 t
ORIGIN      
        1 gccgcggcgt ccagcaggat cggcagacgg gcgcgctcgt cggtcgcgaa ccgcgacagg
       61 acgtggtcga tcgccccccg gcccggctcc ccgatcccca cccgcagccg ggcgaccttc
      121 tccgtgccca gctcatcgat gatcgagcgc agcccgttgt gcccgccgtg cgaacccgac
      181 tcccggaacc ggagcttgcc gaacggcagc gcgaagtcgt ccgccacgac caggagatcg
      241 gcgagcgggg cgctggcacg ggccagcacc ttgcggacgg cgagaccgga atcgttcatg
      301 taggtcagcg gcttgaccag cgtcaggtcg atgccgtcgt agcggcccat gacgacgctc
      361 gaggcgtccc gctggcgccc gcgcccggcc cagccggcac ggtcggccag gcggtcgacg
      421 acctgccagc cgatgttgtg ccgggtcctg gcgtactgcg acccgggatt ccccaggccg
      481 acgacgacct tcacgcgatc ctccggacag ccgaacgggg cccgatcccg atctgggagg
      541 gcctcgtggg atggtacccc gcgaatgcgc gaccgcgccg gcggcgtctc gagcccgtca
      601 gcgccggtcg gcccgtgggg tcgtcagcgc ggtcggcccg gggtctcagc gccggcccgc
      661 cgcgcgcaag gtcgattcca ggccgcgcat ggcggcctcc tcggtgggtt cggcgtggtc
      721 ccagccgcac aggtggagcg tgccgtgcgt cgccagcagc cggagctcgt cgccgggctt
      781 ccatcggacg tcgccggtct ggccgccacg gccctcgatg gcctgctcga tggcacgctc
      841 gaccgagatc accacgtcgc ccaggctcgg ccggcggcca ggcggaagcg cgaaaacggc
      901 cgtgggcgcc accggcggct cggaccgggc catgcccccg ccatgcgccg ggaacgactc
      961 cggcgcgagg agcggaaacg acagcacgtc ggtcggaccg gacttgccga ggtgcgcctc
     1021 gttgagggac gcgagctcgg catcgtcggt caggatcagc ccgagtgagg ccggtctcgg
     1081 cgcgccggcg gcttccgcgg cgcgggccat cgcgcgggcc agggcggcgg tcggaaccgg
     1141 cgcagcgatc ccgtcgcgaa tcgtcacgtc gacccgccac ggtccgaggt agatggaccg
     1201 gctcatgaag cggagccgcc gcctccgcca gcccgtccgg cggccgcgcg ccgcgattcc
     1261 agctccacga ccgtgttctg gggataggcg atccgggtgt ggtacatccc gagcaactgg
     1321 ccgacgaacg cctcgcggat gcgctcgagg tcgcgcaggg tcaggtcgca ctcgtcgaac
     1381 tggccgtcgc cgatccgctc gtcgatgatc cggctgacca tcgcccggat cgcgggctcg
     1441 tcgcgcgcgg cgagcgaacg aacggaagcc tccacgccgt cggcgagcat gatcagcgcc
     1501 gcctcgcgcg tctgcggctt gggtccggag tggcggaacc tgcgttcgtc gaccgtcgcg
     1561 ccggggccgg ccaggtcctt cgcccgggcg tagaagtagc tcatgatcgc cgtcccgtgg
     1621 tgctgcggga tataggcgat cagcgccttg ggcaggtggg ccttgtaggc caggtcgatg
     1681 ccgtccacga cgtgctgctt gaggattccg gcgctgacct cggggtcgag ctggtcgtgg
     1741 atgttctcgc ccccggcctg gttctcgatg aacgcgagcg ggttcgccag cttgccgatg
     1801 tcgtggtagt acgcggcgac acgggtgacc agcggatccg cgccgatcgc ctctgcggcc
     1861 cgctcggcca ggttgcccac c
//
LOCUS       DATDDI010000367         2015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_278563, whole genome shotgun sequence.
ACCESSION   DATDDI010000367 DATDDI010000000
VERSION     DATDDI010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278563"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..668
                     /locus_tag="VIU37_05305"
     CDS             <1..668
                     /locus_tag="VIU37_05305"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: protein motif:HMM:NF024744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEY6013397.1"
                     /translation="LGIRTVYDLRTEGERASAPDRLPPGARHVVADVIGDKLEGSPVR
                     MLDLLDRPDVAERELGGDRGRALWIGHYRDFVRMASARVAYASLFRGMAAEERRPVLF
                     HCSTGKDRTGWAAAALLLLLDVPYADVMADYLASARYVEPMITPFADAYAARGGDPAL
                     IHRIFATLPEYLDASRDEVRRAYGDIEGYFTDGLGIDAGTQAAIRDALLDPGRTGQTV
                     DRR"
     gene            665..1321
                     /locus_tag="VIU37_05310"
     CDS             665..1321
                     /locus_tag="VIU37_05310"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6013398.1"
                     /translation="MTDVAPDGSPVAFYRRLPATGEPELIHRVIAPGASVLDLGCGPG
                     RIAAPLAALGHRVTGVDNGAAMIRALPEGIEGVVADAATVRLARRFGAVLLASHLLND
                     PMDGDAFVATAAAHLEPAGVVVAETYPPGWDPVAAVGVETRLGDARITVLDASVDEGI
                     VHAAVRYGVDGQEWQQSFSARLLDEAEIRATFARHGLAFGRWLDRPGWFVAEAAGAAG
                     "
     gene            1445..>2015
                     /locus_tag="VIU37_05315"
     CDS             1445..>2015
                     /locus_tag="VIU37_05315"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEY6013399.1"
                     /translation="MDLEQIAERLGSRLEQAEPAGWGDARATQRLSLSDGRRFAARRF
                     GGTEAGPLARRIAAIMAGLARAGLPVQPSTVVETDRATWLLTAWIDGETGAGWLDEPD
                     RARQLAERMGRLALRLRAVDPAGLGLAGSGLVISLVLAVMADHVVRGALAYKTLLIWP
                     YAVAPAIGAVLWSFMFNPTIGILAYGMKLL"
BASE COUNT          253 a          722 c          746 g          294 t
ORIGIN      
        1 gactcggtat ccggaccgtc tacgacctgc gaaccgaggg cgaacgagcg tcggcgcccg
       61 accggctgcc acccggcgcc cggcacgtgg tggccgacgt gatcggcgac aagctggagg
      121 gcagcccggt ccggatgctc gacctgctgg accggccgga cgtcgcggag cgcgagctgg
      181 gcggcgatcg agggcgtgcg ctctggatcg gccactaccg cgacttcgtg cggatggcgt
      241 cggcccgcgt cgcctacgcc agcctgttcc gtggcatggc ggccgaggag cgacggccag
      301 tcctgttcca ctgctcgacc gggaaggacc ggaccggctg ggccgcagcg gcactgctgc
      361 tgctcctgga cgtcccgtat gcggacgtca tggccgacta tctcgccagc gcccggtacg
      421 tcgagccgat gatcacgccg tttgccgacg cgtacgccgc ccgcggcggt gaccccgcgc
      481 tgatccaccg gatcttcgcc acgctgcccg agtacctcga cgcgtcacgg gacgaggttc
      541 ggcgggcgta cggggacatc gagggctact tcaccgacgg gttgggcatc gacgccggca
      601 cccaggctgc catccgcgat gccctgctcg atcctggccg gaccgggcag accgtcgacc
      661 gccgatgacc gatgtcgcgc cggacggcag ccccgttgcg ttctaccggc gcctgccggc
      721 gaccggcgag cccgagctca tccatcgtgt catcgcaccg ggcgcgagcg tgctcgacct
      781 cggatgcggt cccgggcgca tcgcggcgcc cctcgccgcg ctcgggcatc gagtgaccgg
      841 cgtggacaac ggcgcagcga tgatccgcgc cctgccggag gggatcgagg gtgtcgtcgc
      901 cgacgccgcc accgtccggc ttgcgcgtcg gttcggtgcg gtcctgctcg ccagccacct
      961 gctcaacgat ccgatggacg gggacgcgtt cgtcgccacc gcggccgcgc acctcgagcc
     1021 ggccggggtc gtggtcgcag agacctaccc gccgggctgg gatcccgtcg cggcggtcgg
     1081 ggtcgagacc cgtctcggcg acgctcggat cacggtgctg gacgcctcgg tcgacgaagg
     1141 catcgtgcac gcggccgtcc gctacggcgt cgacggccag gagtggcagc agtcgttcag
     1201 cgcccgcctc ctcgacgagg ccgagattcg ggcgacgttc gcgcgccacg ggctcgcgtt
     1261 cgggcgctgg ctcgatcgcc ccgggtggtt cgtggccgaa gcggccggcg ctgccggctg
     1321 acggtcaacc gggagcccgc tgcccgtcag gcgtcgcggg tccggccacg ggacctggaa
     1381 cgcgcgaacg ccggcgtccg gctggacggg tcatgatccg ggcgtcgctg gaggaccgga
     1441 ccggatggac ctcgaacaga tcgccgagcg gcttggatcg cgtctcgagc aggccgagcc
     1501 cgccggctgg ggtgacgcgc gcgcgaccca gcgcctctcg ttgagcgacg gacgccggtt
     1561 cgcggcgcgg cgattcggcg ggacggaggc gggcccgctc gcgagacgga tcgccgccat
     1621 catggccggc ctggctcgag ccggcctgcc ggtccagccg tccaccgtgg tggagaccga
     1681 tcgtgccacc tggttgctca cggcctggat cgacggcgag acgggggccg gctggctcga
     1741 cgagcccgac cgggcgcgcc agcttgccga gcgaatgggc cgattggcgc tccggctgcg
     1801 agccgtcgat ccggccggcc tcgggctggc cgggtccggg ctcgtcatct cgctggtcct
     1861 cgcggtcatg gccgaccacg tcgtgcgcgg agcgctcgcc tacaagacgc tgctcatctg
     1921 gccctatgcg gtggcgccgg cgatcggggc ggtgctgtgg tcgttcatgt tcaatccgac
     1981 catcggcatc cttgcctacg gcatgaaact tcttg
//
LOCUS       DATDDI010000368         2078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_549236, whole genome shotgun sequence.
ACCESSION   DATDDI010000368 DATDDI010000000
VERSION     DATDDI010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549236"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..446)
                     /locus_tag="VIU37_05320"
     CDS             complement(<1..446)
                     /locus_tag="VIU37_05320"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY6013400.1"
                     /translation="MPQTVATHPDAAPTAAVRGATERGGRAWSHLTGLDGLRAIAVLA
                     VLAYHAGFGMAQGGFLGVEVFFVISGYLITALLLAEHRRAGRIDPVRFWLRRARRLLP
                     ALFFLLAVTLAVAVAVVPGEIARLRPDAVAALGYVTNWHLIAGDQS"
     gene            complement(601..>2078)
                     /gene="xylB"
                     /locus_tag="VIU37_05325"
     CDS             complement(601..>2078)
                     /gene="xylB"
                     /locus_tag="VIU37_05325"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR01312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004856 - xylulokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0005997 - xylulose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0042732 - D-xylose metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HEY6013401.1"
                     /translation="RSQRRPMPPSSSLVAGVDSSTQATKVVVVDADSGAVVASGQGRH
                     TVGGTGGARETDPRDWWTALQAALAATGRAGEIAAIAVAGQQHGLVVLDGQGVPLRPA
                     SLWNDTRAAPDAELLTDRLGAATWAQLTGLRPVASFTVCKWAWLRRTEPDVARATAAV
                     RLPHDYVTERLSGQGTTDRSDVSGTGWWSPATGRYLDEILALPEVLLPAERLPTVVGP
                     ADVAGTVTAEAAAGTGLTAGALVGPGAGDNAGAALGLGLTVGQAAMSLGTSGTIFAVA
                     DRPAADASGIVAGFADATGRFLPLAATLNCTVAVDRMAGWLGLARDDVAPAGDVVVLP
                     YLDGERTPNLPLASGTIVGLRHTTTPQQILMAAYEGAVASLLVAFDAIGEAVGGLDPA
                     APLLLVGGGARGETWRSVVRRLTGRAVQIPDATEAVAMGAAAQAAAVLRGEPPTEVAR
                     RWDVGRGTLLDPVPADTERLARIRAVLQTELDAQARPPAGR"
BASE COUNT          254 a          789 c          799 g          236 t
ORIGIN      
        1 tacgactggt cacccgcgat gagatgccag ttggtcacgt agccgagcgc cgcgacggcg
       61 tccggccgga gccgggcgat ctccccgggc accacggcca cggcgacggc cagcgtcacg
      121 gcgagcagga agaacagagc gggcagcagc cggcgagcac gccggagcca gaaccggacg
      181 gggtcgatcc ggccggcgcg gcgatgctcg gccagcagga gcgcggtgat cagatagccg
      241 ctgatcacga agaagacctc gacgccgagg aagccgccct gcgccatccc gaacccggcg
      301 tggtacgcaa gcacggccag gacggcgatc gcgcgcagtc cgtcgagacc ggtcaggtgc
      361 gaccacgcac ggccgccgcg ctcggtcgcg cctcggacgg cggcggtcgg ggcggcgtcc
      421 gggtgggtcg cgaccgtctg cggcatgttc ctgcgggtgg gggccgatgc ggattcgagc
      481 ggacccggac gcgacgatcc gggcgacgcc ggttgccggg catcgtaccg cgtcggccac
      541 gcggctgcgg ccatgcggct gcggccatgc ggctgcggcc gtgcggctgc ggccgtgcgg
      601 ctagcggccc gcgggcggcc gggcctgcgc gtcgagctcg gtctggagga cggcccggat
      661 cctcgccagg cgctcggtgt cggcggggac cggatcgagc agcgtgccgc ggccgacgtc
      721 ccagcggcgg gcgacctccg tcggcggctc gcctcggagc acggcggccg cctgcgcggc
      781 ggcgcccatc gccaccgcct ccgtcgcgtc ggggatctgc accgcgcgcc cggtcagccg
      841 gcgcacgacc gaccgccagg tctcgccgcg ggcaccgccg ccgacgagca gcagcggggc
      901 cgccggatcg agcccgccga cggcctcgcc gatggcatcg aacgccacca gcagcgaggc
      961 gaccgcgccc tcgtaggcgg ccatcaggat ctgctgcggc gtggtggtgt gccgcagccc
     1021 gacgatcgtg ccgctcgcca gcgggaggtt cggcgtgcgt tcgccgtcga ggtaggggag
     1081 gacgaccacg tcgcccgccg gcgccacgtc gtcacgagcc agcccgagcc agcccgccat
     1141 cctgtcgacg gcgaccgtgc agttgagggt cgccgcgagc ggcaggaacc gtccggtggc
     1201 gtcggcgaac ccggccacga tcccgctcgc gtcggcggcc gggcggtccg ccaccgcgaa
     1261 gatcgtcccg gatgtgccga ggctcatcgc cgcctggccg acggtcaggc ccaggccgag
     1321 cgccgcaccc gcgttgtcgc ccgcgcccgg cccgacgagc gctcccgcgg tgagccccgt
     1381 cccggccgcc gcctcggccg tcaccgtgcc cgcgacgtcg gccggcccga cgaccgtcgg
     1441 caggcgctcg gccgggagga ggacctcggg cagcgccagg atctcgtcga gatagcggcc
     1501 ggtggctggg gaccaccagc cggtgccgga gacgtcgctg cggtcggtcg tgccctgccc
     1561 ggacagccgt tcggtgacgt agtcgtgcgg cagccggacg gccgcggtcg cgcgggcgac
     1621 gtccggctcg gttcgccgga gccaggccca cttgcagacg gtgaacgagg ccaccggtcg
     1681 gagcccggtg agctgcgccc acgtcgcggc ccccagccgg tccgtcagga gctcggcgtc
     1741 cggtgcggcc cgggtgtcgt tccacagcga ggccggccgg agcggcaccc cctgcccgtc
     1801 gagcacgacg aggccgtgct gctgcccggc gaccgcgatc gccgcgatct cgccggctcg
     1861 cccggttgcc gcgagggcgg cctgcagcgc cgtccaccag tcgcgcgggt cggtctcgcg
     1921 ggcgccgccg gtcccgccga ccgtgtgccg gccctgtccg ctggcaacca cggctccgct
     1981 gtcggcatcg accaccacca ccttggtggc ctgcgtcgag ctgtcaacac cggcgacgag
     2041 cgagctgctg ggtggcatcg gtctcctctg gctacggc
//
LOCUS       DATDDI010000369         1647 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_257889, whole genome shotgun sequence.
ACCESSION   DATDDI010000369 DATDDI010000000
VERSION     DATDDI010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257889"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VIU37_05330"
     CDS             complement(<1..785)
                     /locus_tag="VIU37_05330"
                     /inference="COORDINATES: protein motif:HMM:NF013662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEY6013402.1"
                     /translation="MIDRLTTPADWPAILLGRAGAADPTDLDEAARAGAFDGLRRAIR
                     DLGATGTIATIAAAGLRGRGGAGYPAAEKWRLAATTEAPRRYVVANGYAADPAAGGDR
                     FLMEIDPFSVVEGTAIAAFAVGATEAIIAVRSEGTETIRRLEAAIGAATDGGFLGTDV
                     LGSGHDIAIEVRGVQGAYMLGEETVLLKALEGKRGQPEQRPPYPAERGLRGMPTVVNN
                     VQTLAAVPWIVRQGAPAFAAVGRPGAAGTVLVQLRTPSGIGIA"
     gene            complement(790..1473)
                     /locus_tag="VIU37_05335"
     CDS             complement(790..1473)
                     /locus_tag="VIU37_05335"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HEY6013403.1"
                     /translation="MSLIPGLGIVSGMALTLRRFFEPKVTVKYPEVRLDVPHKFRGRL
                     QLLYDEWGTLKCETCFQCAQACPIECIDMGGMDTRGRFHVHWGAPETYGERREESALR
                     RSGRTVPDPANHSFASIDLGAVDAVLEDFDHDPARMLEILEATQAAYGYLPVAALKRI
                     SNRTGAWYAMIYGTASFYKHLRFEPAATAQADAMDAHRPTEATYLAAFDTALGGSGSG
                     TAATRRAQA"
BASE COUNT          227 a          589 c          598 g          233 t
ORIGIN      
        1 tcggcgatgc cgatgcccga cggcgtccgc agctggacga ggacggtgcc ggcggcaccc
       61 gggcgaccga ccgccgcgaa cgccggggcg ccctgccgga cgatccacgg caccgcggcc
      121 agcgtctgga cgttgttgac gacggtcggc atgccgcgca ggccgcgttc ggccgggtag
      181 ggcggtcgct gctccggctg gccgcgcttg ccctcgagcg ccttgagcag cacggtctcc
      241 tcgcccagca tgtaggcacc ctggacgccg cgaacctcga tcgcgatgtc gtgcccggat
      301 ccgagcacgt cggtgccgag gaagccgcca tccgtggcgg ccccgatcgc cgcttcgagc
      361 cggcggatcg tctcggtgcc ctccgagcgg accgcgatga tcgcctcggt cgcgccgacg
      421 gcgaaggccg cgatggccgt gccctcgacg accgagaacg gatcgatctc catcaggaag
      481 cggtcgccgc ccgccgccgg gtccgcggca tagccgttgg ccacgacgta gcggcgcggc
      541 gcctcggtgg tcgccgccag gcgccacttc tcggcggccg ggtagcccgc tccaccgcga
      601 ccccgcaggc ccgcagccgc gatcgtggcg atcgttccgg tcgccccgag gtcgcggatc
      661 gcccggcgca gcccgtcgaa ggccccggcg cgggcggcct cgtcgagatc ggtcgggtcc
      721 gcagcgccgg cgcgacccag caggatggcc ggccagtcgg ccggggtggt caggcggtcg
      781 atcatcggct caggcctgcg cccgtcgggt ggcagcggta cccgacccgc tcccgccgag
      841 cgcggtgtcg aacgccgcga gataggtggc ctcggtcggc cggtgcgcat ccatcgcgtc
      901 ggcctgggcc gtcgccgccg gctcgaagcg caggtgcttg tagaagctgg ccgtgccgta
      961 gatcatcgcg taccaggcgc cggtccggtt gctgatccgc ttgagcgcgg cgaccggcag
     1021 gtagccgtat gcggcctgcg tcgcctcgag gatctcgagc attcgtgccg ggtcgtggtc
     1081 gaagtcctcg aggaccgcgt ccacggcgcc gaggtcgatc gacgcgaacg agtggttggc
     1141 gggatccggc accgtccggc cggaacgcct gagggcggat tcctcgcgcc gctcgccata
     1201 ggtctccggt gcgccccaat ggacgtggaa ccggccgcgc gtgtccatgc cgcccatgtc
     1261 gatgcactcg atcgggcagg cctgggcgca ctggaagcag gtctcgcact tgagcgtgcc
     1321 ccactcgtcg tagaggagct ggaggcggcc gcggaacttg tgcggcacgt ccagccgcac
     1381 ctccgggtac ttgaccgtca ccttgggctc gaagaagcgg cgcagggtga gcgccatgcc
     1441 gctgacgatg ccgaggccgg ggatcaggct catcgctcgg tcctcactta ttgaccacga
     1501 cgatcgccgt cgccgtcacg aacaggttga gcagcgaggc gggcagcagc cacttccagg
     1561 cgaagtccat cagctggtcg atccggacgc gcggcagcgt cccgcgcatc cacacgaagg
     1621 tgaacacgaa gacgtacgtc ttggcca
//
LOCUS       DATDDI010000370         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_382649, whole genome shotgun sequence.
ACCESSION   DATDDI010000370 DATDDI010000000
VERSION     DATDDI010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382649"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VIU37_05340"
     CDS             complement(<1..422)
                     /locus_tag="VIU37_05340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013404.1"
                     /translation="MKTHVHCQTCGCAVVVDGVADPLIRRTPAGPVVDWPEGEPDVAL
                     IHRNVVEEIAEHLTVTEDTSDGFHTFRELYAVRLALTSAFFCALTEWGALDGAGPWRS
                     KLHHDGAEPFGGGWFIVGVTLSTGQVTFHYPMSAWRDF"
     gene            complement(440..712)
                     /locus_tag="VIU37_05345"
     CDS             complement(440..712)
                     /locus_tag="VIU37_05345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease signature motif containing
                     protein"
                     /protein_id="HEY6013405.1"
                     /translation="MTDRGTSNTNDRGSAESRRARRAWIVETFGTAGLVVCYWGCGLV
                     MLADEFEVDRLVPGCRGGRYVRGNIVPACGPCNRERGNAHRDGILI"
     gene            complement(709..924)
                     /locus_tag="VIU37_05350"
     CDS             complement(709..924)
                     /locus_tag="VIU37_05350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013406.1"
                     /translation="MKTWLTFDRPESASGSQKITARADRIEAVRDSDCLDGTAHITMM
                     SGADFWVTGSRSEILDRIEATRWADGA"
     gene            complement(921..1433)
                     /locus_tag="VIU37_05355"
     CDS             complement(921..1433)
                     /locus_tag="VIU37_05355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013407.1"
                     /translation="MRQYNITVEHEDGSATQYLNVPASDASRVLAGATTDEDVTGYVV
                     RLAGAKPARNVTPRTLVPEVALSGSSAVPPVVVHLVIAYAHLRRLRHERALAEVERIK
                     AEGRSPIGPPSAWFNREDLLAWFDTFPLPRDLVDTGATRGGRLSPILRAMAGRGLLLA
                     PSGDEGWRLP"
     gene            complement(1430..2086)
                     /locus_tag="VIU37_05360"
     CDS             complement(1430..2086)
                     /locus_tag="VIU37_05360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013408.1"
                     /translation="MSRSLYHHTGLVPEIEVSPERVRFTIRSPRVMATGSWVDVEGEW
                     KWRDPELYVDDVRCAPAATHQELGEIVRDPDAWKDGHPYVEPELVPLDRSCFVRDIAD
                     LPAAGQRLAEQFVKRGMLTKVGVVDEGGNWVMIIDAPKGSIRLELHAQHGMPVRMWSQ
                     LQGEDAKEIDLRRANEVIRKITGYRPVPAGHVPDGVHDRGTVVTARGVEIRKGEMRRT
                     "
BASE COUNT          322 a          769 c          733 g          323 t
ORIGIN      
        1 tcgaagtcac gccaggccga catcgggtag tggaacgtca cctggccggt cgacagggtg
       61 acgccgacga tgaaccaacc gccgccgaac ggctcggcgc cgtcgtggtg gagcttggag
      121 cgccagggac ccgcgccgtc cagcgccccc cactcggtca gggcgcagaa gaaggccgag
      181 gtgagcgcga gccggacggc gtacagctcg cggaaggtgt ggaagccgtc cgaggtgtcc
      241 tcggtcacgg tcaggtgttc ggcgatctcc tccaccacgt tgcggtggat caacgccacg
      301 tcgggctcgc cctccggcca gtcgaccacc ggcccggccg gcgtccgacg gatcagggga
      361 tcggcgacgc cgtccacgac gacagcgcac ccgcaggtct ggcagtgcac gtgagtcttc
      421 atgatcgttt cctccacggc tagatcagga ttccgtctcg gtgcgcgttg ccgcgctcgc
      481 ggttgcaggg cccgcacgcg ggcacgatgt tgccacggac gtagcgcccg ccccggcagc
      541 ccgggaccag gcggtccacc tcgaactcgt cggccagcat gaccaagccg caaccccagt
      601 agcagaccac caggccggcc gtgccgaagg tctcgacgat ccacgcccga cgggcccgcc
      661 gagactcggc ggacccgcgg tcgttggtgt tcgaggtgcc ccgatcggtc atgccccgtc
      721 agcccaacgg gttgcctcga tccggtccag gatctccgac ctggagccgg tcacccagaa
      781 gtcggcgccc gacatcatcg tgatgtgcgc cgttccgtcc aggcagtcgg agtcccggac
      841 ggcctcgatc cggtcggccc gtgcagtgat cttctggctt ccggatgccg actcaggccg
      901 gtcgaaggtg agccaggtct tcacgggagc ctccacccct cgtcgcccga cggcgccagg
      961 agcagaccac gacccgccat cgcgcgcagg atcggggaca ggcggccacc gcgagtggcg
     1021 ccggtgtcga ccaggtcacg cggaagcggg aaggtgtcga accaggcgag caggtcctcc
     1081 cgattgaacc aggccgacgg cggcccgatc ggcgagcggc cctcggcctt gatccgctcc
     1141 acctcggcca gcgcccgctc gtgccggagc ctgcgcaggt gcgcgtaggc gatgaccaga
     1201 tggacgacca ccggcgggac ggcggagctg ccggacaggg ccacctcggg cacgagcgtc
     1261 cgaggtgtga cgttcctggc tggcttggcg ccggccagac gcacgacgta gccggtgacg
     1321 tcctcgtccg tggttgctcc ggccaggacg cgcgaggcgt ccgaggccgg cacgttgagg
     1381 tactgggtcg ccgagccgtc ctcgtgctcg accgtgatgt tgtactgcct catgtccgcc
     1441 tcatctctcc cttgcggatc tcgacgcccc gcgcggtgac gaccgtgccg cggtcgtgca
     1501 cgccgtccgg gacatggccg gccgggaccg gccggtaacc ggtgatcttc ctgatcacct
     1561 cgttggcacg gcggagatcg atctccttgg cgtcctcgcc ctggagctgg gaccacatcc
     1621 ggaccggcat gccgtgctgg gcgtgcagct ccaggcggat cgaacccttc ggggcgtcga
     1681 tgatcatcac ccagttgccg ccctcgtcga ccacgccgac cttggtcagc atgccgcgct
     1741 tgacgaactg ctccgccagg cgctgaccgg cggccggcag atcggcgatg tcgcgcacga
     1801 agcacgaccg gtcgaggggg accaactccg gctcgacgta cgggtgcccg tccttccagg
     1861 cgtccggatc gcggacgatc tcgcccagct cctggtgcgt ggcggcaggg gcgcatcgga
     1921 cgtcgtccac gtacagctcc gggtcgcgcc acttccactc gccctcgacg tcgacccacg
     1981 agccggtggc catgacccgc ggcgagcgga tcgtgaagcg cacccgctcg ggcgagacct
     2041 cgatctcggg cacaagcccg gtgtggtggt acagcgagcg tgacacactc ttgatcatct
     2101 tgcttgcgcg cacccgcgcc atcactgcct ccggtagtcg gtcgtga
//
LOCUS       DATDDI010000371         2677 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_736507, whole genome shotgun sequence.
ACCESSION   DATDDI010000371 DATDDI010000000
VERSION     DATDDI010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736507"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..860)
                     /locus_tag="VIU37_05365"
     CDS             complement(<1..860)
                     /locus_tag="VIU37_05365"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HEY6013409.1"
                     /translation="MPIYLDHAATTPLRREALDAMLPYLTEQFGNPSSAHSYGRAARA
                     ALDEAHERVARCLRADGREIVFTSGGTEANNLALKGAAWAGKARGHRIVTSSVEHHAV
                     GHTLRYLEKFGFEVMELPVDRYGRVDPDELEAAINDRTILVSIMLANNKVGTIQPIAE
                     IAAVVRTHKDVLLHVDAVQAAPYLEIDVRQLGADLISLGAHKFEGPKGAGALYVRHGT
                     HILAQQQGGTQERHRRAGTESVAGAVGLATAYELSCAERPETVARLRRQRDRLGKAVL
                     ATPGTEPTGHP"
     gene            complement(911..>2677)
                     /locus_tag="VIU37_05370"
     CDS             complement(911..>2677)
                     /locus_tag="VIU37_05370"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY6013410.1"
                     /translation="LDSGDLEREKGITILAKQTTVDYAGVRLNIVDTPGHADFGGEVE
                     RSLLMVDSVLLLVDAAEGPLPQTRYVLQKAMARRLPVVVALNKIDRGDARPAEVLDEV
                     YELFIDLGADEHQIEFPIVYTNAKLGTATRDLSVPGTDLRPLLDLLVEVTPPVTYTPG
                     HPLQLLVTNLSANDYVGRMAVGRIWNGEIRTGQRIVVVRDAPDDTAGSIEPGRTVTLS
                     GTVTSLQTAHGIDRVDIEAAGPGDIVSVAGLPEVTIGDTLTDPADPRPLPRLDVDAPT
                     LRMTFGVNTSPLAGREGKFVTSRQIKARLEKEVLGNVSIEVRPSESSEAFEVRGRGEL
                     QLAVLIEQMRREGFELTASRPEVLLREVGGEIQEPYERITIDIPPDYIGEIQTALADR
                     KGRLEQLSTDADGRVRLEYVLPVRGLIGYRGQLLTDTRGTALLHQIGEGYGPWAGEVT
                     HRTNGVLVSDRGGTSNAYGLFNLEQRAELFIGAGVEVYEGMIVGENSRSGDMDVNPTK
                     EKKLTNIRTHSHDESLRLTPPRPMTLESALEFIASDELVEVTPLSIRLRKRQLSQHDR
                     RREIGRAEDVRRSAERETAPAG"
BASE COUNT          343 a          941 c          967 g          426 t
ORIGIN      
        1 gggtggcccg tcggctcggt gcccggcgtc gcgaggacgg ccttgcccag ccggtcgcgc
       61 tggcgccgga ggcgggcgac cgtctcgggt cgctcggcgc aggacagctc gtaggcggtc
      121 gcgagcccta cggcaccggc cacgctctcg gtccccgccc ggcggtggcg ctcctgcgtc
      181 ccgccctgct gctgggcgag gatgtgcgtc ccgtggcgga cgtagagcgc gccggcgccc
      241 ttcggtccct cgaacttgtg ggcacccagc gagatcaggt ccgcgccgag ctgccgcacg
      301 tcgatctcga ggtacggggc cgcctggacc gcgtccacgt ggagcagcac gtccttgtgg
      361 gtccggacga ccgcggcgat ctcggcgatc ggctggatcg tgcccacctt gttgttggcg
      421 agcatgatcg agacgaggat cgtccggtcg ttgatcgcag cctcgagctc gtccgggtcg
      481 acccggccgt accggtcgac cggcagctcc atgacctcga acccgaactt ctcgaggtag
      541 cgcagcgtgt ggccgacggc gtgatgctcg accgacgagg tcacgatccg gtggccgcgg
      601 gccttgccgg cccaggcggc gcccttgagc gcgaggttgt tggcctcggt cccgcccgag
      661 gtgaagacga tctcgcggcc gtccgccctg aggcagcggg ccacccgctc gtgcgcctcg
      721 tcgagcgcgg cgcgtgcggc gcggccgtag ctgtgcgccg agctcgggtt cccgaactgc
      781 tcggtcagat acgggagcat ggcgtcgagt gcctcgcgcc gcaacggggt cgtggcggca
      841 tgatcgaggt agatcggcat ggccgggatt gtaccgccgg gtccgggcag gccccgccag
      901 cgccgccggg ctaccccgcg ggggcggtct cgcgctcggc ggaccgccga acatcctcgg
      961 cccgcccgat ctcacgacgg cggtcgtgct gggacagctg gcgcttgcgc agccggatcg
     1021 acagcggggt cacctcgacc agctcgtccg aggcgatgaa ctccagcgcg ctctccaggg
     1081 tcatcggccg tggcggggtc agccggagcg attcgtcgtg cgagtgcgtc cggatgttgg
     1141 tgagcttctt ttccttggtc ggattgacgt ccatgtcgcc ggagcggctg ttctcgccga
     1201 cgatcatccc ctcgtagacc tcgacgccgg cgccgatgaa cagctcggct cgctgctcga
     1261 ggttgaacag cccgtaggcg ttggacgttc cgccccggtc cgagacgagg acgccgttgg
     1321 tccggtgggt cacctcgccg gcccacggtc cgtaaccctc gccgatctgg tggagcagcg
     1381 ccgtcccgcg cgtgtcggtc aacagctggc cgcgatagcc gatcaacccg cggaccggca
     1441 gcacgtactc gagccggacg cggccgtccg cgtcggtcga cagctgctcg aggcggccct
     1501 tccggtccgc cagggccgtc tggatctcgc cgatgtagtc gggcgggatg tcgatggtga
     1561 tccgctcgta aggctcctgg atctcgcccc cgacctcgcg cagcaggacc tcggggcgcg
     1621 acgccgtgag ctcgaagccc tcccggcgca tctgctcgat gagcacggcc agctggagct
     1681 cgccgcggcc gcgaacctcg aacgcctcgc tcgattcgga cggccggacc tcgatcgaga
     1741 cgttgccgag gacctccttc tcgagccgcg ccttgatctg gcggctggtg acgaacttac
     1801 cctcgcggcc ggcgagcggc gaggtgttga cgccgaacgt catccgcagc gtcggcgcgt
     1861 cgacgtcgag ccgcggcagc ggccgcgggt cggccggatc ggtcagggtg tcgccgatcg
     1921 tcacctcggg cagcccggcc acgctcacga tgtcgccggg ccccgccgcc tcgatgtcca
     1981 cgcggtcgat cccgtgggcg gtctggagac tcgtgaccgt gccgctcagc gtcaccgtgc
     2041 ggccgggctc gatcgagccc gccgtgtcgt ccggcgcgtc gcggacgacc acgatccgct
     2101 ggccggtccg gatctcgccg ttccagatcc ggcccacggc catccggccg acgtagtcgt
     2161 tggccgacag gttggtgacc aggagctgga gcgggtgacc gggcgtgtac gtcaccggcg
     2221 gggtgacctc gaccagcagg tcgagcagcg gccgcaggtc cgtgcccggc acggacaggt
     2281 cgcgcgtcgc ggtcccgagc ttggcgttgg tgtacacgat cgggaactcg atctggtgct
     2341 cgtcggcgcc caggtcgatg aacagctcgt agacctcgtc gaggacctcg gccgggcggg
     2401 catcgccacg atcgatcttg ttgagggcga cgaccacggg caggcggcgt gccattgcct
     2461 tctggaggac gtaccgcgtc tgcggcagcg gcccctcggc ggcgtccacc agcagcagca
     2521 cggaatcgac catgagcagc gagcgctcca cctccccgcc gaaatcggcg tggccggggg
     2581 tgtccacgat gttgagccgg acccccgcat agtcgacggt cgtctgcttg gcgaggatcg
     2641 tgatcccctt ctcgcgctcg aggtcgcccg aatcgag
//
LOCUS       DATDDI010000372         3093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_736509, whole genome shotgun sequence.
ACCESSION   DATDDI010000372 DATDDI010000000
VERSION     DATDDI010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736509"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VIU37_05375"
     CDS             <1..444
                     /locus_tag="VIU37_05375"
                     /inference="COORDINATES: protein motif:HMM:NF019903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013411.1"
                     /translation="EFIARKVVSNIRELEGALNRMVAYASMGAMPIGIELAQAVLSNV
                     LYNPKKRQVTPERIARVVSDYYSVPIEVLQGRKRDKNIVVPRQIAMFLMRAETDVSLL
                     RIGAELGGRDHSTVLHACDKITREVAVNDELRREIAAVRELIYAD"
     gene            945..2063
                     /gene="dnaN"
                     /locus_tag="VIU37_05380"
     CDS             945..2063
                     /gene="dnaN"
                     /locus_tag="VIU37_05380"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEY6013412.1"
                     /translation="MKLSVMQENLARGLSVVSRAVSNRSTLPVLANVLLKTEDAGLKL
                     TATNLEIGITYWVPGKIETDGATTVPAKLLTDLVNSLPAGDRVDLALQAGDTLHLKCG
                     RFETHVKGIDADEFPAIGAAGERPTTRIAQNALRRALAETVFAAASDEARPILTGVLA
                     RFEGDQLTLAAADNYRIAVKTIPILDPVPETSVVIPARALVELARVLADVEDPVEIVL
                     ASSRNQVLFHLDGIDLVSRLIDGQFPNYQQVVPQTHTTRAILDREELLRAVRPAALIA
                     HESANIVKLQIGADGEPGITVSASAEVGDHVGQVEATVEGDGTTIAFNARYLADVLTN
                     VSADQFALELNGPLSPGVFKPLGDDHYIHVVMPVRTTS"
     gene            2105..>3093
                     /gene="recF"
                     /locus_tag="VIU37_05385"
     CDS             2105..>3093
                     /gene="recF"
                     /locus_tag="VIU37_05385"
                     /inference="COORDINATES: protein motif:HMM:TIGR00611.1"
                     /note="All proteins in this family for which functions are
                     known are DNA-binding proteins that assist the
                     filamentation of RecA onto DNA for the initiation of
                     recombination or recombinational repair; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HEY6013413.1"
                     /translation="MSLLETISLLDLRGYASLDVAFGPGPHLIWGPNAAGKTSLLEAM
                     VLLAWGRSHRTTADGELIRWGTDLGRVEGHVGTNVIEVAIVRSGASGTAGRKRIRVNG
                     LGRRSSSLAGLLRVVVFAPEEMLLIAGSPSLRRAVIDQLAASTSPMYADALSTYGRTL
                     QQRNSLLRAIREEGASRDELRFWDGAFLDSGAAIVTERLRLLEALAGPLAAAHAEIAP
                     DEAATARLTLAYATNAPSHPGEPVREALARRLAETAEKEVWNGSTLIGPHRDDLVFEL
                     AGRDLASFASRGQQRTAILALKLAELDLLTGLDGRPPLLLLDDVFSELDPERRS"
BASE COUNT          485 a         1127 c         1050 g          431 t
ORIGIN      
        1 gagttcatcg cgcgcaaggt cgtcagcaac atccgggagc tcgagggcgc cctcaaccgg
       61 atggtcgcct acgccagcat gggcgcgatg ccgatcggga tcgagctcgc ccaggccgtg
      121 ctgtcgaacg tcctctacaa cccgaagaag cgccaggtga cgccggagcg catcgcgcgc
      181 gtcgtgtccg actactacag cgtcccgatc gaggtgctcc agggccggaa gcgcgacaag
      241 aacatcgtcg ttccccgcca gatcgcgatg ttcctgatgc gcgccgagac cgacgtgtcg
      301 ctgctccgga tcggggccga gctgggcggc cgcgaccact ccacggtcct ccacgcgtgc
      361 gacaagatca cccgcgaggt cgccgtcaac gacgagctgc gccgcgagat cgccgcggtc
      421 cgggagctca tctacgccga ctgagccgcg gtggccgccg gccacggcag agctccggca
      481 tccgaattcg gcggttcagc gccggctccg tgtggacaag cacccgaaat ccgtggagaa
      541 cccccggatg ctgtggacat cccgtccgtc tgcggccccg tacgcccgga catccgtgga
      601 cgaccggcgt acgtccccgg gccttcgggc agggcaccct ccgtccatcc acaggccgta
      661 cgcggcggcg gccaccggat cgatcgtggt gtccacacgc cggcccggac cgtcaaccgc
      721 cggccgccgc acggatcagc acgggcatcc acccggtcca caccatgatg acggtgatga
      781 cggggtgaga agatagggag aagataccca cgaccccggg ggtgccctcg tggacgatcc
      841 ggtcggggac cgtccgctcg caacgatgat ccgagcctca tccgaccaaa ggtcccgatc
      901 tgccgcgacg cggcggcggt caagcagcgt ggagtgaatc caacgtgaaa ctctcggtca
      961 tgcaggagaa cctggcccga ggcctgtcgg tcgtcagtcg cgccgtctcc aatcggagca
     1021 cgttgccggt gctggccaac gtcctgctca agaccgagga cgccgggctc aagctgacgg
     1081 cgacgaacct cgagatcggg atcacctact gggtgccggg gaagatcgag acggacggcg
     1141 ccacgaccgt gcccgcgaag ctcctgaccg acctggtgaa ctcgctgccg gccggcgacc
     1201 gggtcgacct cgcgctccag gccggcgaca cgctccacct caagtgcggg cggttcgaga
     1261 cccacgtcaa ggggatcgat gccgacgagt tcccggcgat cggagccgcg ggcgagcggc
     1321 ccacgacccg gatcgcccag aacgccctgc gtcgcgccct ggccgagacc gtcttcgcgg
     1381 cggcgtccga cgaggcccgg cccatcctga ccggcgtgct cgcccggttc gagggcgacc
     1441 aattgacgct ggccgcggcc gacaactacc ggatcgccgt caagaccatc ccgatcctcg
     1501 atccggtccc ggagaccagc gtcgtgatcc cggcccgtgc cctcgtcgag ctcgcccgcg
     1561 tcctcgccga cgtcgaggat ccggtcgaga tcgtcctggc gtcgagtcgg aaccaggtcc
     1621 tgttccatct cgacgggatc gacctggtca gccggctgat cgacggccag tttccgaact
     1681 accagcaggt cgtcccgcag acgcacacca cccgcgccat cctcgatcgc gaggagttgc
     1741 tccgggcggt ccggccggcg gcgctcatcg cccatgaatc ggccaacatc gtgaagctcc
     1801 agatcggcgc cgacggggag ccggggatca cggtctccgc cagcgccgag gtcggtgacc
     1861 acgtcggcca ggtcgaggcg acggtcgagg gcgacggcac gacgatcgcg ttcaacgcgc
     1921 gctatctcgc ggacgtgttg accaacgtca gcgccgacca gttcgcgctc gagctcaacg
     1981 ggccgctctc gccgggcgtc ttcaagccgc ttggcgacga ccactacatc cacgtggtca
     2041 tgccggtccg gaccacgtcc tagcccgctc aacccggagg tcggtccggc gacgcccggt
     2101 ccggatgtcc ctgctcgaga ccatcagcct gctcgacctc cgaggatatg cctcgctcga
     2161 cgtcgcgttc ggacccggcc cacacctgat ctggggcccc aacgccgccg gcaagaccag
     2221 cctcctcgag gcgatggtcc tgctcgcctg gggccggtcg caccggacga cggccgacgg
     2281 ggagctgatc cgctggggca cggacctcgg gcgggtcgag gggcacgtgg gcacgaacgt
     2341 catcgaggtg gcgatcgtcc ggtccggggc cagcggaacg gccggtcgca aacggatccg
     2401 ggtcaacgga ctgggacggc ggtcgtccag cctcgcgggc ctgctccgcg tggtggtctt
     2461 cgcgccggag gagatgctcc tgatcgcggg atcgccgtcg ctgcgccgcg cggtgatcga
     2521 ccagctggcc gcctcgacct cgccgatgta cgccgacgcc ctgtcgacct atgggcggac
     2581 gctccagcag cggaacagcc tgctgcgcgc aatccgcgag gagggcgcgt cgcgtgacga
     2641 gctgcgcttc tgggatggcg cgttcctcga ttcgggcgcg gccatcgtca ccgaacgcct
     2701 gcgcctgctc gaggctctcg ccgggccgct ggccgccgcc cacgccgaga tcgcgcccga
     2761 cgaggcggcg accgcgcgat tgaccctggc ctacgcgacc aacgcgccgt cgcacccggg
     2821 cgagccggtc cgcgaggcgc tcgcccggcg cctggccgaa accgccgaga aggaggtctg
     2881 gaacggctcg accctgatcg gaccgcaccg cgacgacctg gtcttcgagc tggcgggccg
     2941 ggacctggcg agcttcgcgt cgcggggcca acagcggacc gcgatcctgg cgctcaagct
     3001 ggccgagctg gatctgctga cggggctcga tggccggccg ccgctcctgc tcctcgacga
     3061 cgtgttctcc gagctcgatc cggagcggcg ctc
//
LOCUS       DATDDI010000373         1865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_652949, whole genome shotgun sequence.
ACCESSION   DATDDI010000373 DATDDI010000000
VERSION     DATDDI010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652949"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..454)
                     /locus_tag="VIU37_05390"
     CDS             complement(134..454)
                     /locus_tag="VIU37_05390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013414.1"
                     /translation="MQLFLIAFQQPIPFGISAVLVITMIFIIQRSAMTAEGGSSWVRR
                     ITGPNAKFLFTFLFIAWALVFGIGLQLVPHAGANSPYGGIGLIALFTGFFIMMGFLWS
                     VIGE"
     gene            561..>1865
                     /locus_tag="VIU37_05395"
     CDS             561..>1865
                     /locus_tag="VIU37_05395"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEY6013415.1"
                     /translation="MTSFDRLGRFVVRRARWVVAAWAVVLVVAVPLAPRVSGQLSAGG
                     FILDDLESARAKALLGTELGAPPSALVIVLSSETLTAGTPAFEAAAAAATRDVATAPH
                     VARVVSHLFAPRQVSPDGHTAYDVVFLDLPADDSPDALPILRERLRPEPELTVELAGG
                     PAFYGDVQTVSEADLRRSELISLPLAALTLLLVFGSVIAAGIPLVVGGAAVIVALAAI
                     FVVASLTPMSIFVLNLATLLGLGLGVDYSLLMTSRFREELALRPDRPDRVAEAVRATV
                     ATAGRAVFFSGLTVLLGLLGLVLFEFMILRSVGIAGAIVVGLAVASALTLLPAILAIV
                     GTRVDRLAIRRVAPRADADGPWARLARRVMRHPVAVLVPTLGCILLLGVPFLHVRFNA
                     PDSSILPASVPSRTAFDRLQRDFGEGEFAPMVVAIRTPGPATS"
BASE COUNT          239 a          703 c          637 g          286 t
ORIGIN      
        1 ggggcgaggt ggcagccgag ccgatgcgcc tcggatgcat cgaggaacgg gcacccgggc
       61 gacccgatgc atccgacatg catcacgaag gacgctgatc gcgccccgga ccccgcgggc
      121 ggcccgcccg aggctactcc ccgatcacgg accagaggaa gcccatcatg atgaagaagc
      181 cggtgaacag cgcgatcagg ccgatcccgc cgtagggcga gttggcccct gcgtgcggca
      241 cgagctgcag cccgatcccg aacacgagcg cccaggcgat gaacaggaac gtgaacagga
      301 acttcgcgtt cgggccggtg atccggcgca cccagctcga gccaccctcg gccgtcatcg
      361 ccgagcgctg gatgatgaag atcatcgtga tgaccaggac ggccgagatc ccgaacggga
      421 tcggctgctg gaaggcgatc aggaagagct gcacgcgcgg atgctagcag aagcgatcgt
      481 ccgcgaacgc ccccgcctcg gtgtcgccgt accatgtcgc cgacctccag cgcgacaccg
      541 aaccgaggcg aaatcccgac gtgacctcct tcgatcgact cggccggttc gtcgtgcgac
      601 gggcccggtg ggtggtcgcc gcgtgggcgg tcgtgctcgt ggtcgccgtc ccgctcgccc
      661 cacgcgtcag cggccagctg agcgccggcg gcttcatcct cgacgatctc gagtcggctc
      721 gcgccaaggc gctcctcggc acggagctcg gcgctccgcc gtcggcgctc gtcatcgtcc
      781 tgagcagcga gacactcacg gccggaacgc cggccttcga ggcggccgcc gccgccgcga
      841 cgcgcgacgt cgccacggcg ccgcacgtcg cccgcgtggt ctcgcacctg ttcgcgccgc
      901 gccaggtctc gcccgacggg cataccgcct acgacgtcgt cttcctcgac ctgccggccg
      961 acgactcgcc ggacgcgctg ccgatcctgc gcgagcgtct ccgaccggag cccgagctga
     1021 ccgtcgagct ggcgggcggc ccggcgttct acggcgacgt ccagaccgtg tcggaggccg
     1081 acctgcggcg aagcgagctc atctcgctcc cgctggccgc gctgaccctg ctcctcgtgt
     1141 tcggatcggt gatcgccgcg gggatccccc tcgtcgtcgg cggcgccgcg gtgatcgtgg
     1201 ccctggccgc catcttcgtg gtggcgtcgc tgacgccgat gagcatcttc gtgctcaacc
     1261 tcgccaccct gctcgggctc gggctcggcg tggactactc gctgctgatg accagccgat
     1321 tccgcgagga gctcgcgctg cgaccggatc gtcccgatcg cgtggcggag gccgtccgcg
     1381 cgacggtcgc caccgccggc cgcgcggtct tcttcagcgg gctgacggtc ctgctcggcc
     1441 tgcttgggct ggtcctgttc gagttcatga tcctgcgctc ggtcgggatc gccggcgcca
     1501 tcgtggtcgg gctggccgtg gcatcggcgc tgacgctgct cccggcgatc ctggcgatcg
     1561 tcggcacccg ggtcgaccgc ctggccatcc gccgcgtcgc gccacgagcc gacgccgacg
     1621 gcccgtgggc gcggctcgcc cgccgggtca tgcgccatcc ggtcgcggtc ctggtcccga
     1681 cgctcggctg catcctgctg ctcggcgtcc cgttcctgca cgtccgcttc aacgccccgg
     1741 attcctcgat cctgcccgcg tcggtgccgt cccggaccgc cttcgatcgt ctccagcgtg
     1801 acttcggcga gggcgagttc gccccgatgg tggtcgcgat ccggacgccg ggcccggcca
     1861 cgtcc
//
LOCUS       DATDDI010000374         1561 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_632450, whole genome shotgun sequence.
ACCESSION   DATDDI010000374 DATDDI010000000
VERSION     DATDDI010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632450"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VIU37_05400"
     CDS             <1..203
                     /locus_tag="VIU37_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013416.1"
                     /translation="RAAADGRPVQPTRLLPMLPAAVAAQVARESATPGSGFAPGNGHG
                     NGHVPALTAGDGHGDHAGHGHG"
     gene            213..773
                     /locus_tag="VIU37_05405"
     CDS             213..773
                     /locus_tag="VIU37_05405"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEY6013417.1"
                     /translation="MAIPSTIPILGIPWDDVLFVILAGTMLASGLAVVVMRDIIRCGL
                     AMMVCFGALAGLYVMAGAPLVGAAQVLVYIGAISVLVLFAIMLTQTKSGSSRLTFQTQ
                     AGWAAVAAVVLFLIIGIAALGTDWPDVSARMAVVTQALATILFKDYVLPFEVVSVLLL
                     AAVIGGVFLAKREDRPGERVSDEVAR"
     gene            773..1084
                     /gene="nuoK"
                     /locus_tag="VIU37_05410"
     CDS             773..1084
                     /gene="nuoK"
                     /locus_tag="VIU37_05410"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEY6013418.1"
                     /translation="MADQLDTYLTISGALFAIGTFGFLARRNAISMLMSIELMLNAVN
                     LAIVAFGAFIPQLRDRGAVIALMVMAVAAAEATVGLAIVIAIYRNRKTPLVDEYDAMR
                     R"
     gene            1101..>1561
                     /locus_tag="VIU37_05415"
     CDS             1101..>1561
                     /locus_tag="VIU37_05415"
                     /inference="COORDINATES: protein motif:HMM:NF012868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013419.1"
                     /translation="MSYELLIPLIVALPLAGFLITAAIGKRLGKQAHWIPVGAVVLSW
                     IVAMVVVVAALTNAEPFGESGFGVTLWQWIPAHGVAGSPDFTVNAGFFVDHLSAVLLI
                     VVTTIGMLVHVYSIGYMGHDAGYWRFFAYLNLFMVSMLILVLADSWLVLFVA"
BASE COUNT          187 a          576 c          522 g          276 t
ORIGIN      
        1 agcgggccgc ggccgatggc cggccggtcc agccgacccg gctgctgccg atgcttccgg
       61 cggcggtcgc tgcccaggtc gcccgcgagt cggcgacgcc gggctccggc ttcgcgccgg
      121 gcaacggcca cgggaacggc cacgtgcccg ccctgaccgc gggcgacggc cacggcgacc
      181 acgccggcca cgggcacggc tgagcccgcg cggtggcgat cccctcgacg atccccatcc
      241 tcggcatccc ctgggacgac gtcctcttcg tgatcctggc cgggacgatg ctcgcgtccg
      301 ggctggcggt cgtcgtcatg cgcgacatca tccggtgcgg gctcgcgatg atggtctgct
      361 tcggcgcgct ggccgggctg tacgtcatgg ccggcgcccc gctcgtcggc gccgcccagg
      421 tcctcgtcta catcggcgcg atcagcgtcc tcgtcctgtt cgcgatcatg ctcacccaga
      481 cgaagtccgg ctcgtcgagg ctcacgttcc agacgcaggc cggctgggcc gcggtggccg
      541 ccgtcgtgct gttcctcatc atcgggatcg cggcgctcgg cactgactgg ccggacgtct
      601 cggcccggat ggcggtcgtg acccaggcgc tggccacgat cctgttcaag gactacgtcc
      661 tgccgttcga ggtcgtcagc gtcctcctcc tcgcggcggt catcggcggc gtgttcctcg
      721 ccaagcgcga ggatcgcccc ggcgagcgcg tcagcgacga ggtcgcccgc tgatggccga
      781 ccagctcgac acgtacctca cgatctcggg cgcgctcttc gcgatcggca cgttcggctt
      841 cctcgcgcgc cggaacgcga tctcgatgct gatgtcgatc gagctcatgc tcaacgccgt
      901 caacctcgcg atcgtcgcgt tcggcgcgtt catcccgcag ctccgggacc gcggcgcggt
      961 catcgcgctg atggtcatgg cggtcgccgc tgcggaggcg accgtcgggc tcgcgatcgt
     1021 catcgccatc taccgcaacc ggaagacccc gctcgtcgac gagtacgacg cgatgcgccg
     1081 atgagccgcc cggtcgtcgc gtgagctacg agctcctgat cccgctcatc gtcgccctgc
     1141 ccctggccgg cttcctcatc acggccgcga tcggcaagcg cctcggcaag caggcccact
     1201 ggatcccggt cggggcggtc gtcctgtcgt ggatcgtggc gatggtcgtc gtcgtcgcgg
     1261 cgctcaccaa cgccgaaccg ttcggcgaga gcggcttcgg ggtcacgctg tggcaatgga
     1321 tcccggccca cggggtcgcg ggctcgcccg acttcaccgt caacgccggc ttcttcgtcg
     1381 accacctgag cgcggtgctg ctcatcgtcg tgacgacgat cgggatgctc gtccacgtct
     1441 actcgatcgg gtacatgggc catgacgcgg gctactggcg gttcttcgcc tacctgaacc
     1501 tgttcatggt ctcgatgctc atcctcgtcc tggccgacag ctggctcgtg ctgttcgtgg
     1561 c
//
LOCUS       DATDDI010000375         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_174568, whole genome shotgun sequence.
ACCESSION   DATDDI010000375 DATDDI010000000
VERSION     DATDDI010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174568"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..2007)
                     /gene="polA"
                     /locus_tag="VIU37_05420"
     CDS             complement(52..2007)
                     /gene="polA"
                     /locus_tag="VIU37_05420"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEY6013420.1"
                     /translation="MSEAMAMMASICCHVGGTAVPESEANGSAAGGPARAFEPTDDLP
                     TALAAAMIDPGRIEVRGAGDIDALEPWLSAQPVVGVSLLADDPRPRRGTPLALGVAGP
                     DGRVVAADGPEAADALRRLIQRTGTQLVGHEVKPVLVAAFAEDPGSAPLPVAFDTQIA
                     AYILNAALRSQTIADVVAENLDQILPPANELPATARAGLEALAALTVREPLERRLADV
                     NLERLFREVELPLIPVLARMEATGVALDLAALDVLDRDFGAEISRLEQEIYLDVGHEF
                     NLGSPKQLEQILFFELNLPKGKRTKTGYSTDASVLEELRPAHPMIDKLLEWRVYTKLR
                     STYVEALPSLMASDGRLHTTFHQAVASTGRLSSSDPNLQNIPIRTELGRKIRRAFVAG
                     EPGLVLLTADYSQIELRILAHVSGDEHLKDAFARQADIHRETAARVLHKPPEEITKDE
                     RSMAKMVNFGLAYGMSDFGLATRANIPRREAQEFINSYFAAYSGISYYMMAIKEQAKA
                     QGFVETLLGRKRQIPELRASNPALRGAGERMAINMPIQGTAADIQKIAMIHVADRLAA
                     TGSHARLLLSVHDELLFEVPRDEVEPLAAIVRETMEGALPLSVPLIVDVKVGDDWESM
                     TPLTRADAIAAEADELPLEAPVAPLAG"
     gene            1976..>2296
                     /locus_tag="VIU37_05425"
     CDS             1976..>2296
                     /locus_tag="VIU37_05425"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY6013421.1"
                     /translation="MLAIMAIASLMIGNLAAIAQTNLKRMLAYSTIGQMGFVLLGLLS
                     GVVNGNTLSAANAYSSAMFYIITYVLTTLGSFGVILLLAREGFESEEVSDLAGLNQRS
                     PLYAA"
BASE COUNT          322 a          787 c          821 g          366 t
ORIGIN      
        1 ggtcgcgcgc gaccgtctcg acctcgggca attcgggcat ggggagagac cttacccggc
       61 gagcggcgcg accggtgcct cgaggggcag ctcgtcggct tccgccgcga tggcgtccgc
      121 gcgggtcagc ggcgtcatcg attcccagtc gtcgccgacc ttgacgtcga cgatcagtgg
      181 tacggacagc ggcagcgcgc cctccatcgt ctcgcggacg atcgccgcca gcggctcgac
      241 ttcgtcgcgc ggcacctcga acaggagctc gtcgtggacc gacaggagca gtcgggcgtg
      301 cgagcccgtt gccgcgagcc ggtccgccac gtggatcatc gcgatcttct ggatgtcggc
      361 ggcggtgccc tggatcggca tgttgatcgc catccgctcc ccggcgccgc ggagcgccgg
      421 gttcgaggcg cgcagctcgg ggatctggcg cttgcggccg agcagcgtct ccacgaagcc
      481 ctgggccttg gcctgctcct tgatcgccat catgtagtag ctgatcccgg agtacgcggc
      541 gaagtagctg ttgatgaact cctgcgcctc gcggcgcggg atgttcgcgc gggtcgccag
      601 cccgaagtcg ctcatgccgt aggcgaggcc gaagttgacc atcttcgcca tcgaccgctc
      661 gtccttggtg atctcctcgg gcggcttgtg gaggacgcgg gcggccgtct cgcggtggat
      721 gtccgcctgg cgggcaaacg cgtccttgag gtgctcgtcg cccgacacgt gggccagaat
      781 ccggagctcg atctgcgagt agtccgccgt cagcaggacc agccccggtt cgccggccac
      841 gaacgcccgc cggatcttgc ggccgagctc ggtccggatc gggatgttct ggaggttcgg
      901 gtcggacgag gacagccgcc cggtcgaggc gaccgcctgg tggaacgtgg tgtggagccg
      961 gccgtccgac gccatcagcg acggcagcgc ctcgacgtac gtcgaccgca gcttcgtgta
     1021 gacgcgccac tcgaggagct tgtcgatcat cgggtgcgcg ggccggagtt cctcgagcac
     1081 ggacgcgtcg gtcgagtacc cggtcttcgt gcgcttgccc ttgggcagat tgagctcgaa
     1141 gaacaggatc tgctcgagct gcttggggct gcccaggttg aactcgtggc cgacgtcgag
     1201 gtagatctcc tgctcgagcc gcgagatctc ggcgccgaag tcgcgatcga gcacatcgag
     1261 tgcggcgagg tcgagcgcga cccccgtcgc ctccatccgc gccaggacgg ggatcaacgg
     1321 cagctcgacc tcgcggaaca gtcgctccag gttgacgtcg gcgaggcgcc gctcgagcgg
     1381 ttcgcggacg gtgagggcgg cgagcgcctc gagcccggcg cgggccgtcg ctggcagctc
     1441 gttcgccggc ggcaggatct gatcgaggtt ctcggcaacg acgtcggcga tcgtctggct
     1501 ccgcagggcg gcgttcagga tgtaggccgc gatctgggtg tcgaacgcga cgggcagcgg
     1561 cgccgagccc ggatcctcgg cgaacgcggc caccagcacg ggcttgactt catgcccgac
     1621 gagctgggtc ccggtccgct ggatgagccg gcgcaacgcg tcggcggcct ccggaccgtc
     1681 ggccgccacg actcggccgt cgggaccggc cacgccgagc gcgagcggcg tgccgcggcg
     1741 cggtctcggg tcgtcggcca gcagcgagac gccgaccacc ggctgggcgg acagccacgg
     1801 ctccaacgcg tcgatatcgc ccgcgccccg aacctcgatc cggccggggt cgatcatcgc
     1861 ggcggccagg gccgtcggca ggtcgtcggt cggctcgaag gcacgtgccg ggccgccggc
     1921 ggccgacccg ttcgcctcgg actccgggac cgctgttccg ccaacatggc agcagatgct
     1981 ggccatcatg gccatcgcct cgctcatgat cggcaacctg gccgccatcg cgcagaccaa
     2041 cctcaagcgc atgctggcct attcgaccat cggccagatg ggcttcgtgc tgctcggcct
     2101 gctgtcgggc gtggtcaacg gcaacacgct gtcggccgcc aatgcgtaca gctcggcgat
     2161 gttctacatc atcacctacg tgctgaccac gctgggaagc ttcggcgtga tcctgctgct
     2221 ggcgcgcgag ggcttcgaga gcgaggaagt ctccgacctg gccggcctca accagcgcag
     2281 cccgctgtac gcggcc
//
LOCUS       DATDDI010000376         2171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_694852, whole genome shotgun sequence.
ACCESSION   DATDDI010000376 DATDDI010000000
VERSION     DATDDI010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_694852"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2171
                     /locus_tag="VIU37_05430"
     CDS             <1..>2171
                     /locus_tag="VIU37_05430"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY6013422.1"
                     /translation="PFFTTLDDLLARATPGRIEIRWHAVPAAAALDVRDVGSLANRVR
                     GLKDRLSATLGDGVGVSTGLPGILTDADRSLLVSRAGVLLVTVQLVVLAAYAVLLSAS
                     LLIERRRIDTAMLRSRGAGRWRVVALTAIEAAVLTVPIALLAPWLAATALRVFNLVGP
                     LADAGLAIEPRVTLDAYVAAGAAALVCLAALVLPAARSSRQFATVHGAVARGETTSIG
                     QRLGIDVALLAVAGLGFWQLRQYGAPLTRSVQGTLGLDPLLIATPALGLLAGGVAALR
                     IVPLLAQLAERATTRRRGLVAALGARQLARRPLRYTRAALLLMLAMAMGVFAVCYTAT
                     WSSSQADQARFQVGADVRVQAGRQLESMPTWALDAAYGSLPGLVDRLPVARETVRVGR
                     STAGGEILAADAGIVPAVVRLRGDLATDSLATLSAPLVAARPDVQGVPLPDGTRQLRV
                     DVDLAITTIEREELDPATGLQVEVPATRAEIRDWRGLGLSAVVRDARGILYRFAGGSG
                     TLGDERNQLVVSLGTAGAPDGAAFASPLELVALEVAVGLPAAYRATEATVTVGTLSAA
                     GADGAWTPASLALATGWRSTSAYFGRPHQVVSRFLRGDDLGAATGAPGLPYLPGVDQV
                     GRGMILTFAPAALATATDQPVPVVASEAFLAASASRVGDDVPLTIGGVRRTVHLAGSV
                     RAFPGTDPREPVALMDLATLSLLQYEGNDAVEPVREWWLAV"
BASE COUNT          211 a          821 c          815 g          324 t
ORIGIN      
        1 ccgttcttca cgacactgga cgacctcctc gccagggcca cgccgggccg gatcgagatc
       61 cggtggcacg cggtgccggc ggcggccgcg ctcgacgttc gcgacgtcgg ctcactggcg
      121 aaccgggtgc gcggcctcaa ggatcgtctg agcgccacgc tcggcgacgg tgtcggcgtg
      181 tcgaccggcc tgcccggcat cctgaccgat gcggatcgct cgttgctggt gagccgggcc
      241 ggggtgctcc tggtcacggt ccagctcgtc gtgctggctg cctacgcggt gctcctcagc
      301 gcctcgctgc tcatcgaacg gcggcgcatc gacaccgcga tgctccgatc ccgtggcgcc
      361 ggtcgctggc gggtcgtcgc cctgaccgcc atcgaggcgg cggtcctgac cgttccgatc
      421 gccctccttg caccgtggct cgcggccacg gccctgcgcg tcttcaacct cgtcgggccg
      481 cttgccgacg ccgggctcgc gatcgaaccg agggtgaccc tcgacgccta cgtggcggcc
      541 ggtgcggccg ccctggtctg ccttgccgcc ctcgtgctcc cggcggcgcg atcctcccgg
      601 cagtttgcga cggtgcacgg cgcggtcgcg cgcggggaga cgaccagcat cgggcagcgg
      661 ctcggcatcg acgtggcgct cctggccgtg gcaggtctcg ggttctggca gctccggcag
      721 tacggcgcgc cgctgacccg gtcggtgcag ggcaccctcg gtctcgatcc gttgctgatc
      781 gccaccccgg cgctcggcct gctggccggc ggcgtggcgg ccctccggat cgtgccgctg
      841 ctggcccagc tggccgagcg cgccacgacc cggcggcgcg ggctcgtggc ggccctggga
      901 gcccggcagc tggcgcgccg gccgcttcgc tacacgcggg ccgcgctgct cctcatgctg
      961 gccatggcga tgggcgtctt cgcggtctgc tacaccgcca cctggtcgtc gtcgcaggcc
     1021 gaccaggcga ggttccaggt gggcgcggac gtccgcgtcc aggccggacg ccagctcgag
     1081 tcgatgccca cctgggccct cgatgccgcg tacggctcgc tacccgggct cgtggaccgg
     1141 ctgcccgtcg cgcgcgagac cgtgcgtgtc ggccggtcca cggcgggtgg cgagatcctg
     1201 gccgcggatg ccggcatcgt cccggcggtc gtccgcctgc gcggggacct tgccaccgac
     1261 tccctggcga ccctctcggc acccctcgtc gccgcgcgcc cggacgtcca gggcgtcccg
     1321 ctgcctgacg ggacccggca gctccgcgtg gacgtcgacc tggcgatcac gacgatcgag
     1381 cgcgaggagc tggatccggc gacgggtctc caggtcgagg tgccggccac gcgagcggag
     1441 atccgggact ggcggggcct cgggctgtcc gcggtcgtgc gcgacgcgcg cgggatcctg
     1501 taccggttcg cgggcggctc ggggacgctc ggcgacgagc gcaaccagct cgtcgtgtcc
     1561 ctcggcacgg ccggcgcacc ggatggggcg gcgttcgcgt cgccgctcga gctcgtcgcg
     1621 ctggaggttg ccgtcggcct cccggcggcc tatcgcgcga ccgaggcgac cgtcaccgtc
     1681 ggcacgctct cggccgccgg agcggacggc gcgtggacgc cggcgtccct ggcgctggcc
     1741 accggctggc ggagcacgtc cgcgtacttc ggccggccgc accaggtcgt ctcgcgcttc
     1801 ctgcgcggcg acgacctcgg ggccgcgacg ggcgcgcctg gcctgccgta cctgcccggg
     1861 gtggatcagg tggggcgcgg catgatcctg accttcgccc cggcggcgct ggcgaccgcg
     1921 accgatcagc cggtgccggt cgtcgcgtcc gaggcgttcc tcgcggcgtc cgccagccgg
     1981 gtcggcgacg acgtgccgct gacgatcggc ggggtccgcc ggaccgtcca cctggccggc
     2041 tcggtccgcg cgtttccggg cacggatccc cgcgagccgg tggcgctgat ggacctggcg
     2101 acgctgtcgc tgctccagta cgagggtaac gacgccgtcg aacccgtccg cgagtggtgg
     2161 ctcgcggtcg a
//
LOCUS       DATDDI010000377         1973 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_507689, whole genome shotgun sequence.
ACCESSION   DATDDI010000377 DATDDI010000000
VERSION     DATDDI010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507689"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..538)
                     /locus_tag="VIU37_05435"
     CDS             complement(2..538)
                     /locus_tag="VIU37_05435"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY6013423.1"
                     /translation="MKGIVLAGGTATRLYPLTIVTNKHLLPIYDRPMIYYPIETLAGM
                     GIREVMVIVGGKSVGDVVELLADGSHFGLDLTYRYQRGALGIAHAIGLARDFVGDDAF
                     CCVLGDNILRGPDLAETAAEFEAGPWGAGTLLYKVPDPERFGVAEFGPDGQVVPDRPP
                     TRRSAVPSSASRSSCSRC"
     gene            complement(619..1191)
                     /gene="lepB"
                     /locus_tag="VIU37_05440"
     CDS             complement(619..1191)
                     /gene="lepB"
                     /locus_tag="VIU37_05440"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEY6013424.1"
                     /translation="MTNRPRLGCLFEIVETVVLTLIIFLVIQTFVAQPYRVEQGSMEH
                     TLEPDQYVLVDKLTPRIEPYQPGDVVVFTPPPGFERAGGAPFIKRVIGVGGDTVEIKN
                     GEVIVNGKTLAEPYLFADAPGAPPEPTIATQESWTVPAGQLFVLGDHRAVSEDSRTFG
                     TVSTASVIGRAWLRYWPLNVFGVLQTPTYP"
     gene            complement(1202..>1973)
                     /gene="mreC"
                     /locus_tag="VIU37_05445"
     CDS             complement(1202..>1973)
                     /gene="mreC"
                     /locus_tag="VIU37_05445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEY6013425.1"
                     /translation="NEALQQENERLTNENAGLDAIRKENETLTGLLQMKAGFEFKTTA
                     ATVIARESSEFRRLVVLDRGTNDGIAVGDVAVAVGNALAGRVVEVGPDSAKVVLVSDS
                     SSTVIGQLTSNAATGQVVGGLDDGVLVMSQIDSGEKVVVGDEVVTAGIELGGGIRSPY
                     PKGLLLGQVIDVRRDANDVVQTAYLQPAANLDKLEYLLVILDYQGGLPPIEEQPVPCP
                     DASGTLPQGEQPCFSPNPSPSPSAKPSVQPSIAPSPSR"
BASE COUNT          285 a          677 c          708 g          303 t
ORIGIN      
        1 gtcagcaccg gctgcacgac gagcggcttg cggacgatgg gacggcgctg cggcgcgtag
       61 gcggccggtc cggcacgacc tgaccgtcgg ggccgaactc ggcgacgccg aaccgctcgg
      121 gatccgggac cttgtagagg agcgtgccgg caccccacgg accggcctcg aactcggcgg
      181 cggtctcggc gaggtccggg ccgcgcagga tgttgtcgcc caggacgcag cagaacgcgt
      241 cgtcgccgac gaagtcccgg gcgagcccga tcgcatgggc gatcccgagc gcgccgcgct
      301 ggtagcgata ggtcaggtcg agcccgaaat gggagccgtc ggcgagcagc tccacgacgt
      361 cgccgacgct cttgccgccg acgatgacca tgacctcgcg gatccccatc ccggcgagcg
      421 tctcgatcgg gtagtagatc atcggccggt cgtagatcgg cagcaggtgc ttgttggtga
      481 cgatcgtcag cgggtagagc cgcgtcgcgg tcccgccggc gagaacgatg cccttcatcc
      541 tggcgaaggg tagcagtcgc ccgtcgcgcc gatggcacgg tgggtggcga cgcgatccga
      601 gccggccccg ccctcgggtc aggggtacgt cggcgtctgg agcaccccga acacgttgag
      661 cggccagtag cgcaaccagg cacggccgat gacgctggcg gtcgataccg tgccgaaggt
      721 ccgcgaatcc tcggagaccg cccggtgatc ccccagcacg aagagctggc cggccggcac
      781 ggtccaggat tcctgggtgg cgatcgtggg ctccggcggg gcgcccggcg cgtcggcgaa
      841 gaggtagggc tcggccagcg tcttcccgtt gacgatgacc tcgccgttct tgatctccac
      901 ggtgtcgccg ccgacgccga tcacgcgctt gatgaacggg gcgccacccg cccgctcgaa
      961 ccccggtggc ggcgtgaaca cgaccacatc ccccggctgg tagggctcga ttcggggcgt
     1021 cagcttgtcg accagcacgt actggtccgg ctcgagggtg tgctccatcg atccctgctc
     1081 cacgcgatag ggctgggcga cgaaggtctg gatgaccagg aagatgatca gggtgaggac
     1141 gacggtctcg acgatctcga acaggcaccc gagccgcggc cggttggtca tgggctgcgg
     1201 ctcagcgcga cgggctcggc gcgatgctcg gctgcacgct cggcttcgcg ctcggcgagg
     1261 ggctcgggtt cgggctgaag cacggctgct cgccctgggg cagggtcccg ctcgcgtccg
     1321 ggcagggcac gggctgctcc tcgatcggcg gcagcccgcc ctggtagtcg aggatgacca
     1381 gcaggtactc gagcttgtcg aggttggccg ccggctggag ataggcggtc tggaccacgt
     1441 cgttggcgtc gcgccggacg tcgatcacct ggccgagcag caggcccttg gggtacggcg
     1501 agcggatccc gccgcccagc tcgatccccg cggtcacgac ctcgtcgccg acgacgacct
     1561 tctcgcccga atcgatctgg ctcatcacca ggacgccgtc gtcgaggccg ccgacgacct
     1621 ggcccgtggc cgcattcgag gtcagctggc cgatcacggt cgagctcgag tcgctcacga
     1681 gcacgacctt ggcactgtcc ggcccgacct ccaccactcg cccggccagg gcattcccga
     1741 cggcgacggc gacgtcgccg accgcgatgc cgtcgttcgt gcctcggtcg aggaccacga
     1801 ggcggcggaa ctcggacgac tcgcgggcga tcacggtcgc ggccgtggtc ttgaactcga
     1861 agcccgcttt catctggagc aggccggtca gcgtctcgtt ctccttgcgg atcgcgtcga
     1921 gcccggcgtt ctcgttggtc agccgctcgt tctcctgctg gagcgcctcg ttc
//
LOCUS       DATDDI010000378         2121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_549399, whole genome shotgun sequence.
ACCESSION   DATDDI010000378 DATDDI010000000
VERSION     DATDDI010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549399"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..977
                     /locus_tag="VIU37_05450"
     CDS             <1..977
                     /locus_tag="VIU37_05450"
                     /inference="COORDINATES: protein motif:HMM:NF016471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEY6013426.1"
                     /translation="SALRASHAWVDPNGDPAVKASYKFIHHMVMMDGSVGAANTIGCS
                     TGIGYLNHPPGTTGRPNIPAGDRAGVYAHLAAHIKDADMEPPELTRTLPNGREVRIAT
                     EAWPLEELEIRAEGDGMTFRGYAAVFGKPSEDLGGFRETIRPGAFAKTLTEKRAIKMF
                     WNHNTDIPLGSTRSGLTLTEDAKGLLAEGRLPDTSAGRDMSVLIRDHIVDSMSFGFQT
                     VKDSWSEDLSQRELIEARLFEVSPVTAWPAYPQTSASVRELAAEIEAEPDTLAEAFRV
                     LREPEGRLSDEQHQLLVTLINARHASAVMPVALASWRERFAAKGLTAV"
     gene            1084..>2121
                     /locus_tag="VIU37_05455"
     CDS             1084..>2121
                     /locus_tag="VIU37_05455"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEY6013427.1"
                     /translation="MDAYLQTLVDKRQTAWAAAKAIMDTAAAENRDLTAEETASLEKT
                     DADLDRYLVEQTRVVNMTKRLEDGDAIIEQIQKASAESRAVATPDKGTQEWRSLVAVM
                     KGEQNHLDTARTMPVGFESRALATTSGTFYPTTVADFVTVYERTLNPMMDVATVINTN
                     SGSPLVLPRLTADVMAGGSVTAEAAAKTEGDPTISTVQLGAFKIAHITLWSQELDDDE
                     VIGLRQLLADAISRPIGLGWGTFFTTGTGTVQPSGFLTTATNGGTANGTASGGQASDT
                     FFSAFDLIDLFYNLAAPYRRSASWMVSNTALAKMHKFRDANGELLWAPGTIAGAPDTF
                     LGRPVYENPAMA"
BASE COUNT          391 a          757 c          680 g          293 t
ORIGIN      
        1 agagcgcgtt acgcgcctcg catgcctggg tcgatccgaa cggcgatccc gccgtcaagg
       61 cgtcgtacaa gttcatccac cacatggtga tgatggacgg ctcggtcggg gcggcgaaca
      121 ccatcggctg ttcgaccgga atcggctatc tcaaccatcc gcccggaacg acagggcggc
      181 cgaacatccc ggccggcgac cgggctggcg tgtatgccca cctcgccgcg cacatcaagg
      241 atgccgacat ggaaccgccc gagctcaccc gaaccttgcc caacggccga gaggtccgca
      301 tcgccaccga ggcgtggccg ctcgaagaac tggagatccg cgccgaaggc gacggcatga
      361 ccttccgggg ttacgccgcg gtgttcggca agccatcgga ggacctcggt ggcttccgcg
      421 agacgatccg ccccggagcg ttcgccaaga cgctgaccga gaagcgcgcg atcaagatgt
      481 tctggaacca caacaccgac atcccgctcg gctcgacccg ctccgggctg acgctgaccg
      541 aggatgccaa gggcctgctc gccgaggggc ggctgcccga tacctcggcg gggcgcgaca
      601 tgagcgtcct gatccgcgat cacatcgtcg actcgatgtc gttcggcttc cagacggtca
      661 aggactcgtg gtccgaggac ctctcgcagc gcgaactcat cgaggctcgg ctgttcgagg
      721 tgagcccggt cacggcctgg cccgcctatc cccagacctc cgcctcggtc cgcgaactcg
      781 cggccgagat cgaggccgaa cccgacacgt tggccgaggc gttccgcgtc ctgcgggagc
      841 cggaaggccg actcagcgac gagcagcacc agctcctcgt caccctcatc aacgcccgtc
      901 atgccagcgc cgtgatgccg gtcgccctcg cctcgtggcg ggagcggttc gcagccaagg
      961 ggctgacagc ggtctgaccg aaacaagccg gagccggagc cggagcgaca agctcgccac
     1021 cactcgacag gccaccactc gagagcggtc ctcagtcaag ccaacgcttc aagaggacct
     1081 gacatggatg catatctcca gacgcttgtg gacaagcgtc agaccgcctg ggcagccgcc
     1141 aaggcgatca tggacacggc cgcggccgaa aaccgcgacc tgacggcgga agagacggca
     1201 tcgctcgaga agaccgacgc cgacctcgac cgctacctgg tcgagcagac gcgcgtcgtc
     1261 aacatgacga agcgcctcga agacggcgac gcgatcatcg agcagatcca gaaggccagc
     1321 gccgagagcc gcgccgttgc gactcccgac aagggcacgc aggagtggcg ctcgctggtc
     1381 gccgtgatga agggcgagca gaaccacctc gacaccgccc ggacgatgcc ggtcggcttc
     1441 gagagccgcg ccctggcgac cacatcgggg acgttctacc cgacgaccgt cgcggacttc
     1501 gtgacggtct acgagcggac gctcaatccg atgatggacg tggcgaccgt catcaacacg
     1561 aactcgggca gcccgctcgt cctgccgcgc ctgaccgcgg acgtgatggc cggcggctcg
     1621 gtgacggctg aggccgccgc caagaccgag ggcgacccga cgatctcgac cgtccagttg
     1681 ggcgcgttca agatcgccca catcaccctc tggagccagg agctcgacga cgacgaggtg
     1741 atcggcctcc gtcagcttct cgcggacgcg atcagccggc cgatcggcct cggctggggc
     1801 acgttcttca ccacgggcac cggcacggtc cagccgtccg gcttcctgac gactgcgacc
     1861 aacggcggca cggctaacgg cacggcctcc ggcgggcagg cgtcggacac gttcttctcg
     1921 gcgttcgacc tgatcgacct cttctacaac ctcgctgccc cctatcggcg cagcgcctcg
     1981 tggatggtgt cgaacacggc cctcgccaag atgcacaagt tccgcgacgc gaacggcgag
     2041 ctcctgtggg ctcccggcac gatcgcgggc gcaccggaca ccttcctggg tcgcccggtc
     2101 tacgagaacc cggccatggc c
//
LOCUS       DATDDI010000379         2743 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_153881, whole genome shotgun sequence.
ACCESSION   DATDDI010000379 DATDDI010000000
VERSION     DATDDI010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2743
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153881"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VIU37_05460"
     CDS             complement(<1..603)
                     /locus_tag="VIU37_05460"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6013428.1"
                     /translation="MRLLIVAGGTGGHIYPALAVARSLRARPDGPALHWLGGRRGLEA
                     SLVPAAGIELTRLTARSLRTTEADVHAVLDPIRLGLSVPQAAAFLARWRPAAIFTTGG
                     YVAVPVLLAAAPLGIPVVLWDGNVIPGRAVRATARLARVLAVSFEATCRALGRTAGSE
                     RPCYVTGTPIRDVRDVDREAARRRLDIAPSERVLLVFGGSQ"
     gene            complement(518..1828)
                     /locus_tag="VIU37_05465"
     CDS             complement(518..1828)
                     /locus_tag="VIU37_05465"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative peptidoglycan glycosyltransferase FtsW"
                     /protein_id="HEY6013429.1"
                     /translation="MNLAAPIPGFGRRGAETDGVAVERTMVNRTPVKSRAGAVRRERH
                     QADYVILVVVVALTALGILMVYSSSAIKGYLSQDADTFATVGPQIQWAILGMLAMALM
                     MRVDYRYLRLISVPLYLVAIVLLVLVFVPQFNIVVGGSARWLKLGPLPAVHPAEIAKL
                     ALVVYLAHWLAGRGGRIRGFWSGTVPFLLIVVPIIALVFKEPDLGTTGVITMTVFTMF
                     FVAGANLVHLAVMGSGALMAMIVVGLRGYQLDRIRVWQDPWLDRLGEGFHTVQGLLAL
                     GVGGILGTGLGASKVFVPNAFNDFIFAEVGQEFGLLGSVVVIGLFLILAYSGVRIALA
                     APDTFGALLAAGITAWLCLQAFLNIGVVVALLPITGITLPFISAGGSSLIISFAAVGI
                     LLSISRETVEKGTWNEDATADRGRRDGRTHLPGTRRRPVAARPS"
     gene            complement(1825..>2743)
                     /locus_tag="VIU37_05470"
     CDS             complement(1825..>2743)
                     /locus_tag="VIU37_05470"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEY6013430.1"
                     /translation="VAVYTNVSSDHLDRHGSLEAYRRVKRRLAELVDPDGALILNAED
                     PVVTGYAGLGAVPSLLYRRERPMPGGLGVVDGWIVAAGVERLPIAGGGPAATGPGGRI
                     LPVGELAIPGAHNVSNALAAVAVGLLFGVAPDAIREAAASFTGVEHRLEPVALVDGVR
                     FVNDSQGTQPDAVIAALRAFDAPIVLIAGGRDKGIDLAALAPVVAERAVAAVLIGESG
                     PGLGARFREAGLARTETAADLDDAVRRADAIAREALADAGPGAGPATVLLSPAAASFD
                     MFIDYAARGRAFKTAVAALAAHRSGGGER"
BASE COUNT          431 a         1007 c          990 g          315 t
ORIGIN      
        1 ctgcgatccg ccgaacacca gcaggacgcg ttccgagggc gcgatgtcca ggcgtcgccg
       61 ggcggcctcg cgatcgacgt cgcggacgtc ccggatcggc gtgccggtga catagcacgg
      121 ccgctcggac ccggccgtcc gacccagcgc ccggcaggtc gcctcgaacg acacggcgag
      181 gacgcgagcc agccgcgcgg tcgcccggac ggcccgtccc gggatgacgt tgccgtccca
      241 caggacgacc gggatgccga gcggcgcggc ggcgagcagg accgggaccg cgacgtagcc
      301 gccggtcgtg aagatggcgg ccggacgcca tcgggcgagg aacgcggcgg cctgcggcac
      361 ggacagcccg agccggatcg ggtcgaggac ggcgtggacg tccgcctcgg tcgttcggag
      421 cgagcgggcg gtcagccggg tcagctcgat cccggcggcc gggacgaggc tcgcctcgag
      481 gccccggcgg ccgccgagcc agtgcagcgc cggtccgtca ggacgggcgc gcagcgaccg
      541 ggcgacggcg agtgccgggt agatgtgtcc gcccgtcccg ccggccacga tcagcagtcg
      601 catcctcgtt ccacgtcccc ttctctacgg tttcgcgcga gatcgacagg aggatcccga
      661 ccgccgcgaa gctgatgatg agcgatgagc cgccggcgct gatgaacggc agcgtgatcc
      721 cggtgatcgg cagcagcgcg acgacgaccc cgatgttcag gaacgcctga aggcacagcc
      781 acgcggtgat gccggccgcc agcagcgcgc cgaacgtgtc gggcgcggcc agcgcgatgc
      841 ggacgccaga gtacgccagg atcaggaaca gcccgatcac cacgaccgag cccagcagcc
      901 cgaactcctg gccgacctcg gcgaagatga agtcgttgaa cgcattcggg acgaacacct
      961 tgctcgcccc gagccccgtc ccgaggatcc cgccgacgcc gagggccagc aggccctgga
     1021 cggtgtggaa tccctcgccg aggcgatcca gccacggatc ctgccagacc cggatgcggt
     1081 cgagctggta gccgcgcaac ccgacgacga tcatcgccat cagggcaccg ctccccatca
     1141 ccgcgaggtg gacgaggttg gcgccggcga cgaagaacat cgtgaacacg gtcatcgtga
     1201 tgacgccggt cgtcccgagg tcaggctcct tgaagaccag cgcgatgatc gggaccacga
     1261 tcagcaggaa cgggaccgtc ccggaccaga agccgcggat ccgcccgccg cgccccgcca
     1321 gccagtgggc caggtagacg accagggcga gcttggcgat ctcggccggg tggaccgccg
     1381 gcagcgggcc gagcttcagc cagcgagccg acccgccgac cacgatgttg aactgcggca
     1441 cgaacaccag cacgagcagg acgatcgcga cgaggtagag cggcaccgag atcagccgca
     1501 gatagcgata gtcgacccgc atcatcagcg ccatcgccag catgcccagg atcgcccact
     1561 ggatctgcgg ccccacggtc gcaaacgtgt cggcgtcctg cgacaggtag cccttgatcg
     1621 cggacgagga gtagaccatc aggatgccga gcgcggtgag cgcgacgacc acgacgagga
     1681 tcacgtagtc ggcctggtgg cgctcgcggc ggaccgctcc cgcccggctc ttgaccggcg
     1741 tccggttgac catcgtccgc tcgacggcga ccccgtcggt ctcggctccg cggcggccga
     1801 accccgggat cggtgcggcc aggttcatcg ctcccctcct cccgatcggt gcgcggccag
     1861 ggcggcgacc gcggtcttga aggcccggcc gcgggccgcg tagtcgatga acatgtcgaa
     1921 gctcgcggct gccgggctca gcagcacggt ggccggtccg gcgccggggc cggcgtcggc
     1981 gagggcctcc cgggcgatcg cgtcggcgcg tctgaccgcg tcgtcgagat ccgcggccgt
     2041 ctcggtgcgg gcgagtccgg cctcgcggaa gcgcgcgcct aggccggggc cgctctcgcc
     2101 gatcagcacg gccgcgaccg cccgctcggc gacgaccggg gcgagcgccg cgagatcgat
     2161 ccccttgtcc cgtccgccgg cgatcagcac gatcggcgcg tcgaacgccc ggagcgcggc
     2221 gatcaccgcg tccggctgcg tgccctgcga gtcgttgacg aaccggacgc cgtcgacgag
     2281 cgcgaccggc tcgagccggt gctccacccc ggtgaacgat gcggcggcct cgcggatcgc
     2341 gtccggcgcg acgccgaaca ggagccccac ggcgaccgcg gccagcgcgt tcgagacgtt
     2401 gtgcgcgccc gggatggcga gctccccgac cgggaggatg cggcctcccg gcccggtcgc
     2461 ggccgggccg cccccggcga tgggcaggcg ctcgacgccg gctgccacga tccagccgtc
     2521 cacgaccccg agaccgccgg gcatcgggcg ctcccgccgg tagagcagcg acggcaccgc
     2581 cccgagaccc gcgtagccgg tgaccaccgg atcctcggca ttgaggatca gcgctccgtc
     2641 cgggtccacg agctccgcca gccgtcgctt gacccgccgg taggcctcca gcgacccgtg
     2701 gcgatcgagg tggtccgagc tgacgttggt gtagaccgcg acc
//
LOCUS       DATDDI010000380         2623 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_361965, whole genome shotgun sequence.
ACCESSION   DATDDI010000380 DATDDI010000000
VERSION     DATDDI010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361965"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..1232)
                     /locus_tag="VIU37_05475"
     CDS             complement(150..1232)
                     /locus_tag="VIU37_05475"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6013431.1"
                     /translation="MDHVGVGMLGTGFIGEFHTLGLRYVEGARVVAHADGNAERRGAF
                     GERFGSRPHDTIEALCADPDVDLVVVSLPNQFHREAVLAAAAAGKGVACTKPLGRNAA
                     EAADMLRAVTDAGVFHAYLENVIFNPDLLRLRDMVAAGSLGRLTTVRAREGHSGPHAA
                     HFWDAEVAGGGALLDMASHGTEVARFLFGKDLPATEVFAWGDTLVHRDRTTGEDNALM
                     IIRFADGRAASCDVSWSSKGGLEGRFEAWGDAGRAVVDISVGSMKAFIERPSGYLVEK
                     ADADTGWVFPVPDEVRVHGHDLMMADVVGAFRDGRRPTETFGDGYVVNAILDAAYRSL
                     RSGHWETVTLDEPLLARAAPPAGVTA"
     gene            complement(1234..1971)
                     /gene="deoC"
                     /locus_tag="VIU37_05480"
     CDS             complement(1234..1971)
                     /gene="deoC"
                     /locus_tag="VIU37_05480"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEY6013432.1"
                     /translation="MLTIDALTERDIAKTIDHSLLRPELDDRFIEDGCRLAAEYDVAS
                     VCVRPADVRRARALLEGTDVAVGTVIGFPHGNHLTATKVFEARQALADGATELDMVIQ
                     IGALKSGRDADVQADIAAVVEVAHAAGAIVKVIFENAYLTDDEKIRACHLSEAAGADF
                     VKTSTGFAPGGATHDDLRLMRANTSPHIRIKAAGGVRTLDALLEVMALGTTRIGATAT
                     KAIIDEFRARKAGGGAVPVTSGAETGY"
     gene            complement(2030..>2623)
                     /locus_tag="VIU37_05485"
     CDS             complement(2030..>2623)
                     /locus_tag="VIU37_05485"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEY6013433.1"
                     /translation="KMNVPLVNTFMGGDGAKNQDQNWEEALRVWPDIVAFARDHGRKL
                     TLENCPMLFSYDEWPGGHNIATTPRMWRRILEQWGDTIGLNFDPSHLVLQMIDMGRFL
                     KEFGPHVLHYQAKDLMIDRDGLYERGIFSMGMGWQIPRIPGLGQVDWTVVFSELYRAG
                     YEGDCIIEHEDRRFEGTDAKVKQGFLIARDVLRPYCK"
BASE COUNT          371 a          915 c          929 g          408 t
ORIGIN      
        1 gccgaagagg tggacgagcc cgtcggcggc gatcgcgtcc gcgcaccagg cgctcgcttc
       61 ctcgatggcg tcggcctgcg tctcggcgat ccgaccgagc acgtgctccg cctcgcggaa
      121 ccaggtcgcc gacgcgccca cgagcgcggt cacgcggtca cgcccgcggg tggcgcggcc
      181 cgtgcgagga gcggctcgtc gagcgtcacc gtctcccagt gcccgctgcg cagggaccga
      241 tacgcggcgt cgaggatcgc gttgacgacg tacccatcgc cgaacgtctc ggtcggccgg
      301 cggccgtcgc ggaacgcacc gaccacgtcg gccatcatca ggtcgtggcc gtggacgcgg
      361 acctcgtccg ggaccgggaa gacccagccg gtgtcggcgt cggccttctc caccaggtag
      421 cccgacgggc gctcgatgaa cgccttcatc gagccgacgc tgatatcgac caccgcgcgt
      481 cccgcgtcgc cccacgcctc gaagcggcct tccaggccgc ccttcgacga ccacgacacg
      541 tcgcagctcg ccgcacggcc gtcggcgaac cggatgatca tcagggcgtt gtcctcgccc
      601 gtggtccgat cgcgatggac gagcgtgtcg ccccaggcga acacctcggt cgcgggaagg
      661 tcttttccga acaggaagcg ggcgacctcg gtgccgtgcg acgccatgtc gagcagcgcg
      721 ccgccgccgg ccacctccgc gtcccagaaa tgggcggcat gcggaccgct gtggccctcg
      781 cgcgcgcgga ccgtcgtcag ccgcccgagt gagccggcgg cgaccatgtc gcggagccgg
      841 agcaggtcgg ggttgaagat gacgttctcg aggtaggcgt ggaacacgcc agcgtcggtg
      901 accgcccgca gcatgtcggc cgcctccgcc gcgttccgcc cgagcggctt cgtgcaggcg
      961 acgcccttcc cggcggccgc ggcggccagg acggcctcgc gatggaactg gttcggcagc
     1021 gacaccacga cgaggtcgac gtcggggtcg gcgcacagtg cctcgatcgt gtcgtgcggc
     1081 cggctcccga agcgttcccc gaacgcgccg cgacgttccg cgttcccgtc ggcgtgggcg
     1141 acgacccggg caccctccac gtagcgcagg ccgagcgtat ggaactcgcc gatgaagccc
     1201 gttccgagca tcccgacgcc gacgtggtcc atctcagtac ccggtctcgg cgccggacgt
     1261 gaccgggacg gccccgccac cggccttgcg cgcgcggaac tcgtcgatga tcgccttcgt
     1321 ggcggtggcc ccgatccggg tggtcccgag ggccatgacc tcgagcagcg cgtcgagcgt
     1381 ccggacgccg ccggccgcct tgatccggat gtggggcgag gtgttggcac gcatcagccg
     1441 caggtcgtcg tgggtggcgc cgccgggcgc gaacccggtc gaggtcttga cgaagtcggc
     1501 gccggcggcc tcggacaggt ggcaggcgcg gatcttctcg tcgtcggtca ggtaggcgtt
     1561 ctcgaagatg accttgacga tggcaccggc cgcgtgcgcg acctcgacca ccgcggcgat
     1621 gtcggcctgg acatcggcgt cgcgcccgga cttgagcgcg ccgatctgga tgaccatgtc
     1681 gagctcggtg gcaccgtcgg cgagggcctg gcgcgcctcg aacaccttgg tcgcggtgag
     1741 atggttgccg tgcgggaagc cgatgaccgt gccgaccgcc acgtccgttc cttcgaggag
     1801 ggccctggcg cgccggacgt ccgcgggtcg cacgcagacc gacgcgacgt cgtattccgc
     1861 cgcgagccgg cagccgtctt cgatgaagcg gtcgtcgagc tcgggccgga gcagtgaatg
     1921 gtcgatggtc ttggcgatgt cccgttcggt cagcgcatcg atggtcagca tcaggactcc
     1981 gaactcaggg gttgccggtc ggccgtgggc tcgcgtcgcc cgcgagcgtt catttgcagt
     2041 agggccgcag gacgtccctg gcgatcagga agccctgctt gaccttggcg tcggtgccct
     2101 cgaaccggcg atcctcgtgc tcgatgatgc agtcgccttc gtacccggcc cggtagagct
     2161 cggagaagac caccgtccag tcgacctggc cgaggccggg gatccgcggg atctgccagc
     2221 ccatgcccat cgagaagatg ccgcgctcgt acagcccgtc gcggtcgatc atcaggtcct
     2281 tggcctggta atggaggacg tgcggaccga actccttgag gaaccggccc atgtcgatca
     2341 tctggaggac gaggtgggac gggtcgaagt tgagcccgat cgtgtcgccc cactgctcga
     2401 ggatccggcg ccacatgcgg ggggtcgtgg cgatgttgtg cccgcccggc cattcgtcgt
     2461 acgagaacag catcgggcag ttctcgaggg tgagcttgcg gccgtgatcg cgggcgaagg
     2521 cgacgatgtc cggccagacc cgcagtgcct cctcccagtt ctgatcctgg ttcttcgccc
     2581 cgtcgccgcc catgaacgtg ttcaccagcg ggacgttcat ctt
//
LOCUS       DATDDI010000381         1779 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_195617, whole genome shotgun sequence.
ACCESSION   DATDDI010000381 DATDDI010000000
VERSION     DATDDI010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195617"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1196
                     /gene="aceE"
                     /locus_tag="VIU37_05490"
     CDS             <1..1196
                     /gene="aceE"
                     /locus_tag="VIU37_05490"
                     /inference="COORDINATES: protein motif:HMM:NF036501.4"
                     /note="E1 component; part of pyruvate dehydrogenase; forms
                     a complex with DlaT and LpdC; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEY6013434.1"
                     /translation="ARLIRNLLRDEAIGSRVVPIIPDEARTFGMDPLFKEVGIYAALG
                     QRYEPVDSDLILSYREATDGQVLEEGITEAGSMASFQAAATSYATHGLATIPFYIFYS
                     MFGFQRTGDQMWAFGDARGRGFLMGATAGRTTLTGEGLQHDDGQTQILASTIPNLRAY
                     DPAFAYELAAVVRDGIERMYGKRPDGSLGEDVFYYITIYNENYAQAPRPAGVGDGILR
                     GLYRFAEAPGIGGDAHPARLVGSGSILQQVLAARDLLADKFGVAAEVYSAPSFPLLRR
                     DALEAERWNRLHPDAKPRLPYVSQVLPHEGGPIVAATDWMKALPDMVARWLPPHYLAL
                     GTDGFGRSDTRENLRALFEIDPAHIAAATMVSLARCGALTEAKAAKAIRELGIDPDKA
                     DPLAL"
     gene            1393..>1779
                     /locus_tag="VIU37_05495"
     CDS             1393..>1779
                     /locus_tag="VIU37_05495"
                     /inference="COORDINATES: protein motif:HMM:NF044770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013435.1"
                     /translation="MTRPARQHRDPRREVDRPDPEDSARLAGLRYSSDDRPGITRRRA
                     GRGFAYRDPEGRPVRDTRTLARIRTLAVPPAWTDVWITTDPLGHLQATGRDARGRKQY
                     RYHARWRDVRDAAKYHRLVEFCAALPR"
BASE COUNT          246 a          654 c          636 g          243 t
ORIGIN      
        1 tcgcgcggct gatccggaac ctcctgcgcg acgaggccat cgggtcgcgc gtcgtgccga
       61 tcatcccgga cgaggcccgc acgttcggca tggacccgct gttcaaggag gtcggcatct
      121 acgccgccct cgggcagcgc tacgagccgg tcgattccga cctgatcctg tcataccgcg
      181 aggcgaccga cggccaggtc ctggaggagg ggatcaccga ggccggctcg atggccagct
      241 tccaggccgc ggccacgtcc tacgccacgc acgggctggc gacgatcccg ttctacatct
      301 tctactcgat gttcggcttc cagcggaccg gcgaccagat gtgggcgttc ggcgacgcgc
      361 ggggacgtgg cttcctgatg ggtgccacgg ccgggcggac cacgctgacc ggcgagggcc
      421 tccagcacga tgacggccag acccagatcc tcgcgtccac gatcccgaac ctgcgggcct
      481 acgatccggc cttcgcctac gagctggccg cggtcgtccg cgacgggatc gagcggatgt
      541 atggaaagcg acccgacggg tcgctcggcg aggacgtctt ctactacatc acgatctaca
      601 acgagaacta cgcgcaggcc ccgcggccgg cgggggtcgg cgacggcatc ctgcgcggcc
      661 tctaccggtt cgccgaggcg cccgggatcg gcggcgacgc gcatcccgcc cggctcgtcg
      721 gatcggggtc gatcctccag caggtgctgg cggcgcggga cctgctggcc gacaagttcg
      781 gcgtggcggc ggaggtctac tccgcgccgt cgttcccgct gctccggcgc gacgcgctcg
      841 aggccgagcg ctggaaccgg ctccatccgg acgcaaagcc ccgcctgccg tacgtcagcc
      901 aggtgcttcc gcacgagggc ggcccgatcg tcgcggcgac ggactggatg aaggcgctgc
      961 cggacatggt cgcccggtgg ctgccaccgc actacctggc cctcggcacg gacggcttcg
     1021 ggcggagcga cacccgcgag aacctgcggg cgctgttcga gatcgacccg gcccacatcg
     1081 ccgcggcgac gatggtgtcg ctggcgcgtt gcggcgccct gaccgaagcg aaggccgcca
     1141 aggcgatccg tgagctcggg atcgacccgg acaaggcgga cccgctcgcg ttgtagcggc
     1201 tccggccgac ccgctcgcgt tgtagcggtc cggcggcgcc gcggctcctg cccgatagac
     1261 ggctgacatg cctcgaggcg ggtgcgtgag gcgtacggtg ggcgagggtt cgtagggtcc
     1321 gcaagccggt cccgccccgg cgcgtgccgc ccgtcgggtc ggcacgcccg cgttcctcca
     1381 gcgagacgag tcgtgaccag gccagcccgc cagcaccgtg acccgcgccg cgaggtcgat
     1441 cgccccgatc cggaggattc cgcgcgtctc gccggcctgc ggtacagctc cgacgaccgc
     1501 cccgggatca cccggcgccg agccggccga gggttcgcgt atcgcgaccc ggaggggcgg
     1561 ccggtccgcg acacgcgcac cctggcgcgg atccgcacgc ttgccgtccc gccggcctgg
     1621 accgatgtct ggattacgac ggacccgctg ggccacctcc aggccaccgg gcgtgacgcg
     1681 cgcggccgca agcagtaccg ctatcacgcg cgctggcgcg atgtccgcga cgcggcgaag
     1741 taccaccgcc tggtcgagtt ctgcgccgcg ctgccgagg
//
LOCUS       DATDDI010000382         2932 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_133201, whole genome shotgun sequence.
ACCESSION   DATDDI010000382 DATDDI010000000
VERSION     DATDDI010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133201"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VIU37_05500"
     CDS             <1..589
                     /locus_tag="VIU37_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013436.1"
                     /translation="PEVVLRATPVVAAISVVAIGGWMLLGEVRRRRNRGTAAAGHHHD
                     HDHDHGPHPDHVSAAAHDHSRGDGHEHSHGGVRHSHAPRPGSTISWRSLFVLGLAGGL
                     IPSASALLILLGSIAAGRSAFGLVLVVAFGLGMALVMGGIGLALVVARGRLDRVRTAS
                     PLSRLSAYLPLVASVVVLGLGLYLTVQAVSGNTTF"
     gene            632..2080
                     /locus_tag="VIU37_05505"
     CDS             632..2080
                     /locus_tag="VIU37_05505"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HEY6013437.1"
                     /translation="MKELTDRALDTATVLGAGYADVRVVRRRDESVTIKTGRVEGVAS
                     GESEGFGVRVLVDGAWGFASSHVLTVAEADRVAGEAVRIARASATALRHPTTLDDRPP
                     AHGHYETPLSEDPFEIPLETKIGDLLAADQAASSVKGIAFTESIYAAQREWKTFAATD
                     GSLTDQVITHVGAAVEANAVDGDEHQRRSYPDSGGGWQAAGYEYIRGLRLRDRAEPLA
                     DEAVALLTAPQCPSGRFTIVLDPSQLYLQVHESCGHPTELDRVFGTEASYAGTSFLTT
                     DKLDEGFRYGSDLIDIVADATAPGGMGTFGWDDEGVAAQAVPLVRNGIFVGYLSSRET
                     APRIGRRSGGAMRADGWNRIPLIRMTNINLLPKPGMSLDEIVEDTDDGLYLASNRSWS
                     IDDRRLNFQFATEVAYEIKGGKKGRLFKNPTYTGITYEFWRSCDAVGDERSYVMLGTP
                     NCGKGEPGQTGHVGHAVPGARFRDVQVGVGKW"
     gene            2100..>2932
                     /locus_tag="VIU37_05510"
     CDS             2100..>2932
                     /locus_tag="VIU37_05510"
                     /inference="COORDINATES: protein motif:HMM:NF013673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HEY6013438.1"
                     /translation="MNDDRARDALTLAEAALAEVLRHDVTEAEALVMAEDSSLTRFAN
                     SEIHQNVAETNVVINLRCVVGRRVGVASSGRTDAEGLRNLAESAAAIARVVEELDDWS
                     GLPGPTEAHPIPAAYSQATAGASPEFRADAVRAVIAAADSAGVVAFGSFATGSESTAV
                     ANSRGIRVAGTRTTSQLITVSMGPDGGTGYAEAAAVDATTIDAAALGREASGKARSTA
                     NAISVEPGDYAVVLEEYAVVDLLDMLGYLGFSALAVQEERSFFEPGKRIGSDLVTLTD
                     DG"
BASE COUNT          423 a         1071 c         1043 g          395 t
ORIGIN      
        1 gcccgaggtc gtgctccggg ccacgcccgt cgtcgcggcg atctccgtgg tcgcgatcgg
       61 cggctggatg ctgctcggcg aggtccgcag gcgccggaac cggggcacgg cggcggccgg
      121 tcaccaccac gaccacgacc acgaccacgg tccccacccc gaccacgtct ccgccgcggc
      181 gcacgaccat tcgcgcggcg acggccacga gcacagtcac gggggcgtcc gccacagcca
      241 cgccccccgg ccggggtcga ccatctcctg gcgcagcctc ttcgtcctcg gcctcgccgg
      301 cggcctgatc ccgtccgcca gcgccctcct gatcctgctc ggctcgatcg ctgccggccg
      361 gtcggcgttc ggtctcgtgc tcgtcgtcgc cttcgggctc gggatggcac tggtgatggg
      421 cgggatcggc ctggccctgg tcgtggctcg cggccggctg gaccgcgtcc ggacggcgtc
      481 gccgctcagc cggttgagcg cctacctgcc gctcgtagcc tcggtcgtgg tcctcggcct
      541 gggcctgtac ctgaccgtgc aggcagtctc cggcaatacg acgttctgac tatcgcggcg
      601 tcgcacgccc ctctgctagg ctgcgccgcg catgaaggag ctgacggatc gcgccctgga
      661 tacggccacg gtgctgggcg cggggtatgc ggacgtccgt gtcgtccggc ggcgagatga
      721 gagcgtcacg atcaagaccg gccgagtcga gggcgtcgcc tcaggcgaga gcgagggttt
      781 cggcgtgcgc gtcctcgtgg acggggcctg ggggttcgcg tcgtcgcacg tcctgaccgt
      841 cgcggaagcg gaccgggtcg ccggtgaggc cgtcaggatc gcccgggcga gcgccaccgc
      901 cctgcgacac cccacgacgc tcgacgatcg tcccccggcc cacggccatt acgagacgcc
      961 gctgtccgag gacccgttcg agatcccgct cgagaccaag atcggcgacc tgctcgccgc
     1021 cgaccaggcc gcgtcgtcgg tcaaggggat cgccttcacc gagtccatct atgccgccca
     1081 gcgcgaatgg aagaccttcg ccgcgaccga cggcagcctg accgaccagg tcatcaccca
     1141 cgtcggggcg gccgtagagg cgaacgccgt cgacggcgac gagcaccagc gccggagcta
     1201 tcccgattcg ggcgggggct ggcaggccgc gggctacgag tacatccgcg ggctccggct
     1261 tcgcgaccgc gcggagcccc tcgccgacga ggccgtcgcg ctgctgaccg cgccgcagtg
     1321 cccgtcgggc cggttcacga tcgtgctcga cccgtcgcaa ctctacctcc aggtccacga
     1381 gagctgcggc catccgaccg agctggatcg cgtgttcggc acggaggcgt cgtacgcggg
     1441 caccagcttc ctgaccaccg acaagctcga cgaggggttc cgctacggct cggacctgat
     1501 cgacatcgtg gccgatgcca cggcaccggg cgggatgggc accttcggct gggacgacga
     1561 gggcgtggcc gcgcaggccg tgccgctggt ccggaacggg atcttcgtcg gctacctgag
     1621 cagccgcgag accgcgccgc ggatcgggcg gcgaagcggg ggcgcgatgc gggccgacgg
     1681 ctggaaccgg atcccgctga tccggatgac caacatcaac ctgctgccaa agccggggat
     1741 gagcctcgac gagatcgtcg aggacaccga cgacggcctc tatctcgcgt cgaaccggag
     1801 ctggtcgatc gacgaccgcc ggctcaactt ccagttcgcg accgaggttg cctacgagat
     1861 caagggcggc aagaagggcc ggctgttcaa gaaccccacc tacaccggga tcacctacga
     1921 gttctggcga tcgtgcgacg ccgtcggcga cgagcgcagc tacgtgatgc tcgggacccc
     1981 gaactgcggc aagggcgagc ccggccagac cggccacgtc ggccatgccg tcccgggcgc
     2041 ccggttccgc gacgtccagg tcggcgtggg caaatggtga gcccgcggag cggcggcaga
     2101 tgaacgacga ccgcgcgcgc gacgcgctca ccctggccga ggccgcgctg gccgaggtcc
     2161 tccgccacga cgtcaccgag gccgaggccc tcgtgatggc cgaggactcg agcctgaccc
     2221 ggttcgccaa cagcgagatc caccagaacg tggccgagac caacgtggtg atcaacctgc
     2281 gctgcgtcgt cggccggcgc gtgggagtgg cctcgtcggg tcggaccgac gccgagggcc
     2341 tccgcaacct cgcggagtcc gcggcggcca tcgcccgcgt cgtcgaggag ctggacgact
     2401 ggagcgggct ccccggtccg acggaggcgc acccgatccc cgccgcctac agccaggcga
     2461 ccgcgggcgc cagcccggag ttccgcgccg acgccgtgcg cgccgtcatc gccgcggccg
     2521 attcggcggg cgtcgtcgcc ttcggctcgt tcgcgaccgg cagcgagtcg accgccgtgg
     2581 ccaactcccg cggcatacgc gtcgcgggga cccggaccac gtcgcagctg atcacggtgt
     2641 cgatggggcc ggacggtgga acgggctacg cggaggcggc cgcggtggac gccacgacca
     2701 tcgacgccgc agcgctcggg cgagaagcct ccgggaaggc tcgttcgacc gccaacgcga
     2761 tctcggtcga gcccggcgac tacgccgtcg tcctcgagga gtacgcggtc gtcgacctgc
     2821 tggacatgct cggctacctc gggttctccg cgctcgcggt ccaggaggag cgaagcttct
     2881 tcgagcccgg caagcggatc ggcagcgacc tcgtgacgct gaccgacgac gg
//
LOCUS       DATDDI010000383         3764 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_674091, whole genome shotgun sequence.
ACCESSION   DATDDI010000383 DATDDI010000000
VERSION     DATDDI010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674091"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VIU37_05515"
     CDS             <1..901
                     /locus_tag="VIU37_05515"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HEY6013439.1"
                     /translation="ATPEELAGNETNAGLYAFDAVWLRRRIAALVPSPVTGELYLTDL
                     VKLAREDGRIVAAIEFEDDGRFDGINDRSQLAAAEWSLRVRLNEAHMANGVTMRDPST
                     VYLDWTVELGTDVTLEPNVILRGATSVGDGSVIGAGSQLLDATIGRGARVWASVIESS
                     TVEDGATVGPFSHLRPGSVVGAGAEVGNYAELKNAHLGAGSKQHHMSYLGDAEIGPGA
                     NIGAGAITANYDGTRKHRTTIGEGAFIGVDTMLVAPVTVGDGARTGAGAVVTRDVPAG
                     KLAVGVPARIREPRRKPPEDAAG"
     gene            902..2242
                     /locus_tag="VIU37_05520"
     CDS             902..2242
                     /locus_tag="VIU37_05520"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY6013440.1"
                     /translation="MDTLIQLLVIVVLTLLEGVFVAAEIALVTMRRTRIDQLAEEGNR
                     NASRVKHLIAQPGRFLAVTQIGLTFIGFLASAYAAVNLTVSLTTAFEGTGIPFLVSSG
                     EGLALIIVTLLLALFTIVFGELVPKSLALAHTERFALGLSGFVEFLLRILGPIVTALA
                     AVTNSVSRALGAGDQSQGVMSTEELSLLVERGGEQGILEAEEEQMIQAVIELGDQRIH
                     EVMVPRIAMITLAASATMDEVIDKVIDEGHSRIPVYEETIDEIIGILYAKDLLPILKR
                     PAAERPALRSLLRPPVFVPESMSVDDLLHEFQRRKVHLAIVLDEYGGTAGLVTIEDLL
                     EEIVGEIQDEYDVEEPLIVRLSEDEARIDGRTDVDDLTELFDVVLGLEDEDEYDTVGG
                     LIYHRIGGVPKPGDQVLVNGLTLTVETTDGRRVGKVLVVRNRETEQPEDDEADR"
     gene            complement(2270..3295)
                     /locus_tag="VIU37_05525"
     CDS             complement(2270..3295)
                     /locus_tag="VIU37_05525"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEY6013441.1"
                     /translation="MATASQDIDLAVLLADTEAEIVRLVGDRDASTHGLYEMLRYHLA
                     LDGSGASGGKRIRPLLGLLAYASIAGDHRRALPGAAAVELGHNFSLVHDDIEDGDVER
                     RHRPTLWSIHGIPQAINAGDALFSLSRIALHRLTDLGFPDAKVLRLMRLFDQTCLALC
                     EGQYLDIAMSESDALMTVELYFDMIGRKTAALIAASIEAGALLATDDEQVISRYRAFG
                     WALGLAFQLNDDLLGIWGAEQATGKAASDVAHKKKTLPVIYAYEHAGPDDRKRLGELY
                     ASPEPSAAEIAEIVAILERTDARTYTRDQARRYRDEALAELDAAGVLEPAAREHLEGI
                     IVSAISA"
     gene            3405..>3764
                     /gene="recO"
                     /locus_tag="VIU37_05530"
     CDS             3405..>3764
                     /gene="recO"
                     /locus_tag="VIU37_05530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEY6013442.1"
                     /translation="MPIPRRYTTEAIVLTRFDLGEADRVMTLITPTGGKLKVIAKGIR
                     RPTSRLGGSLEPFAELTLSMARGRTFDVVTQVSIGHAWLHLRDSLEATATAWYLAELA
                     DRSLEERHAAEPVYALLR"
BASE COUNT          570 a         1296 c         1356 g          542 t
ORIGIN      
        1 cgccacgccc gaggagctcg ccggcaacga gaccaacgcc ggcctctacg cgttcgacgc
       61 cgtctggctg cgccgccgga tcgcggcgct cgtgccgtcc ccggtcaccg gcgagctcta
      121 cctgacggat ctcgtgaagc tcgcacgcga ggatggccgg atcgtggccg cgatcgagtt
      181 cgaggacgac ggccggttcg acgggatcaa cgatcgctcc cagctggccg cggccgaatg
      241 gagcctgcgc gtccggctca acgaggcgca catggccaac ggggtcacga tgcgcgaccc
      301 gtcgacggtc tacctcgact ggacggtcga gctcggcacg gacgtcaccc tcgagccgaa
      361 cgtcatcctc cgcggcgcga cctcggtcgg cgacggcagc gtgatcgggg ccggcagcca
      421 gctgctcgac gcgaccatcg gtcggggggc gcgggtctgg gccagcgtga tcgagtcgtc
      481 gaccgtcgag gacggggcga cggtcgggcc gttcagccac ctgcgaccgg gcagcgtcgt
      541 gggggccggc gccgaggtgg gcaactacgc ggaactcaag aacgcgcacc tcggggcggg
      601 ctccaagcag caccacatga gctacctcgg cgacgccgag atcggcccgg gcgccaacat
      661 cggcgccggc gccatcaccg ccaactacga cggaacgcga aagcaccgga ccacgatcgg
      721 cgagggcgcg ttcatcggcg tcgacacgat gctcgtcgca cccgtgacgg tcggcgacgg
      781 ggcgcgcacg ggggccggtg ccgtggtgac ccgcgacgtg cccgccggca agctcgcggt
      841 gggcgtccct gcccggatcc gcgagccacg ccggaagccg cccgaggacg cggccgggta
      901 gatggacacg ctcatccagc tgctcgtgat cgtggtcctg acgctgctcg agggcgtctt
      961 cgtggcggcc gagatcgcgc tggtgacgat gcgccggacg cggatcgacc agctcgccga
     1021 ggaaggcaac cgcaacgcgt cgcgggtcaa gcacctgatc gcgcagccgg gccggttcct
     1081 ggcagtcacc cagatcggcc tgaccttcat cgggttcctc gcctcggcct acgccgcggt
     1141 caacctcacg gtcagcctga ccacggcctt cgagggcacc gggatcccgt tcctcgtctc
     1201 gtcgggcgag gggctggcgc tgatcatcgt gaccctgctg ctcgcgctgt tcacgatcgt
     1261 cttcggcgag ctcgtgccca agagcctggc gctcgcccac acggagcgat tcgcgctggg
     1321 cctcagcggc ttcgtcgagt tcctgctccg gatcctcggt ccgatcgtca ccgccctggc
     1381 cgcggtgacc aacagcgtgt cacgtgccct gggtgcgggc gaccagtcgc agggcgtgat
     1441 gagcaccgag gagctcagcc tcctggtcga gcgtggcggg gagcagggga tcctggaggc
     1501 cgaggaggag cagatgatcc aggcggtcat cgagctcggc gaccagcgca ttcacgaggt
     1561 catggtcccg cggatcgcga tgatcaccct ggccgccagc gccacgatgg acgaggtgat
     1621 cgacaaggtc atcgacgagg gccacagccg gatcccggtc tacgaggaga cgatcgacga
     1681 gatcatcggc atcctctacg ccaaggacct cctgccgatc ctcaagcgcc cggcggccga
     1741 gcgtcccgcg ctccgctcgc tgcttcgtcc gccggtgttc gtgcccgagt cgatgagcgt
     1801 ggacgacctc ctccacgagt tccagcgccg gaaggtccat ctcgcgatcg tcctcgacga
     1861 gtacggcggg acggccgggc tggtcaccat cgaagacctc ctcgaggaga tcgtcggcga
     1921 gatccaggac gagtacgacg tggaggagcc gctcatcgtc aggctgtccg aggacgaggc
     1981 gaggatcgac ggacggaccg acgtggacga cctgaccgag ctgttcgacg tcgtgctcgg
     2041 gctcgaggac gaggacgagt acgacacggt cggggggctc atctaccacc ggatcggcgg
     2101 ggtccccaag cccggcgacc aggtcctcgt caacgggttg accctgaccg tggagacgac
     2161 ggacgggcgc cgggtcggca aggtcctcgt cgtgcgcaac cgcgagacgg agcagcccga
     2221 ggacgacgaa gccgaccgct aaacgagggc cggcgaccgc cgggccgcgt tacgcgctga
     2281 tcgccgagac gatgatccct tcgagatgct cgcgggctgc cggctcgagc acccccgccg
     2341 cgtcgagctc cgcgagcgcc tcgtcgcggt agcggcgggc ctgatcgcgg gtgtaggtcc
     2401 gggcgtcggt gcgctcgagg atcgcgacga tctccgcgat ctcggccgcg ctcggctcgg
     2461 gcgacgcata cagctcgccg agccgcttcc gatcgtcggg cccggcgtgc tcgtaggcgt
     2521 agatcaccgg cagggtcttc ttcttgtggg ccacgtcgga ggcggccttg cccgtggcct
     2581 gctcggcgcc ccagatcccg agcaggtcgt cgttgagctg gaaggcgagc ccgagcgccc
     2641 agccgaacgc ccggtagcgg ctgatcacct gctcgtcgtc ggtggccagg agcgcacccg
     2701 cctcgatcga cgcggcgatg agggccgcgg tcttgcggcc gatcatgtcg aagtagagct
     2761 cgaccgtcat gagcgcgtcc gattcgctca tcgcgatgtc gaggtactgg ccctcgcaca
     2821 gcgccaggca cgtctggtcg aacaggcgca tcaggcggag caccttggcg tccgggaagc
     2881 cgaggtcggt caggcggtgg agcgcgatcc gggacaggct gaacagcgcg tcgccggcgt
     2941 tgatcgcctg cgggatgccg tggatcgacc agagcgtcgg ccggtggcgg cgctcgacgt
     3001 cgccgtcctc gatgtcgtcg tggacgagcg agaagttgtg cccgagctcg accgccgccg
     3061 cgcccggcag ggcccgccgg tgatcgccag cgatgctggc gtaggcgagc aacccgagca
     3121 gcggccggat ccgcttgccg cccgaggccc ccgagccgtc gagggcgagg tgatagcgga
     3181 gcatctcgta cagcccgtgg gtggacgcgt cgcgatcgcc cacgagccga acgatctcgg
     3241 cttcggtgtc ggcgaggagg acggcgaggt cgatgtcctg tgaggcggtc gccatgtgcc
     3301 ggggagtgta cacgaaacgt gttcggcgca ggtagcctgt tggctccgga cgctggcgtg
     3361 cgggtggtcg gcgccccgcc gctccgggtg ctaccgtcgc gtcgatgccg atcccgcgcc
     3421 gctacacgac cgaggcgatc gtcctcacgc gcttcgacct gggcgaggcg gaccgggtga
     3481 tgacgctgat cacgcccacc ggcggcaagc tcaaggtcat cgccaagggg atccggcgac
     3541 caacctcgcg gctcggcggc agcctcgagc cattcgccga gctcaccctg tcgatggccc
     3601 gcggccggac gttcgacgtg gtgacccagg tcagcatcgg tcacgcctgg ctccacctgc
     3661 gcgactcgct cgaggcgacc gccaccgcct ggtatctcgc tgagctggcg gatcgttcgc
     3721 tcgaggagcg gcacgcggcc gagccggtct acgcgctgct gcgc
//
LOCUS       DATDDI010000384         1625 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_91444, whole genome shotgun sequence.
ACCESSION   DATDDI010000384 DATDDI010000000
VERSION     DATDDI010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91444"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..604)
                     /locus_tag="VIU37_05535"
     CDS             complement(<1..604)
                     /locus_tag="VIU37_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013443.1"
                     /translation="MTSPARSKLCPKIILEGTRLTHKTDLAFALNDHPRITGPRRYRY
                     HSPLISAEWCAFSPYPWGAGLINFEPADEARALETYATWARLFELQPHYSWIIDRFHL
                     STIAWQRQHGRSYDFGWLEDRLLRLGFHLVLCTRREDTFEAARAERLAVSGNPGQYDD
                     LSVFVREQAVLRELAAASRLPLLELDLTDGDLEAACSRIAD"
     gene            656..1432
                     /locus_tag="VIU37_05540"
     CDS             656..1432
                     /locus_tag="VIU37_05540"
                     /inference="COORDINATES: protein motif:HMM:TIGR00478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEY6013444.1"
                     /translation="MTATRISRIRLDQLLVDRGFAPSRARAQALLLAGHVRVGAGDAA
                     RTDRKPGDLVPADIAVEVLEPEPYVSRGGHKLAAALDAFAIDPRGRICLDVGASTGGF
                     TDVLLQRGASRVYALDVGRGQLAESLRRDPRVVSMERHNARDLTATSLPEPISLATVD
                     VAFISARLLIGPIVSTFRDGGGDLVILVKPQFEAGRAEVAAGRGVVRDPAVHERVVRE
                     VGQAAAGHGLEVGGTIPSPILGPEGNREFLLWARAPGGPA"
     gene            1446..>1625
                     /locus_tag="VIU37_05545"
     CDS             1446..>1625
                     /locus_tag="VIU37_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013445.1"
                     /translation="MNAARRIGFAYNPTIEAALDLRERAAGWVEQRGLEHWASAAADT
                     AVLQAQLPGTDVLVVL"
BASE COUNT          215 a          554 c          626 g          230 t
ORIGIN      
        1 agtcggcgat ccggctgcag gcggcctcga ggtcgccgtc ggtcaggtcg agctcgagga
       61 gcggcaggcg gcttgctgcg gcgagctcgc ggaggacggc ctgctcgcgg acgaagaccg
      121 acaggtcgtc gtactggccg ggattgcccg agaccgcaag gcgctcggcc cgcgcggcct
      181 cgaacgtgtc ctcgcggcgg gtgcacagga cgaggtggaa gccgagccgc agcagccggt
      241 cctccagcca gccgaagtcg tagctccggc cgtgctgccg ctgccatgcg atcgtcgaga
      301 ggtggaaccg gtcgatgatc cacgagtagt ggggctggag ctcgaacagc cgggcccagg
      361 tggcgtacgt ctcgagcgcg cgggcctcgt cggccggctc gaagttgatg agcccggcgc
      421 cccacgggta cggcgagaag gcacaccact cggcggagat gagcggcgag tggtagcgat
      481 agcgccgcgg ccccgtgatc cggggatggt cgttgagggc gaatgccagg tcggtcttgt
      541 gggtgaggcg cgtgccctcg aggatgatct tcgggcagag cttggaccgc gccggggagg
      601 tcatcgcgcc ggcaacggta agcccggcgg aagggccgtg tgccaccatc tcaacgtgac
      661 cgccacgcgg atctcgcgca tccggctcga tcagctgctc gtcgaccgcg gcttcgcgcc
      721 gagccgggcg cgggcccagg cgctgctgct cgcgggtcac gtgcgcgtcg gggcaggcga
      781 tgcggctcgg acggatcgga agccgggcga cctggtgccg gcggacatcg cggtggaggt
      841 cctggagccg gagccatacg tcagccgcgg cggccacaag ctggcggcgg cgctcgacgc
      901 cttcgcgatc gatcctcgtg gccgcatctg cctcgacgtc ggggcctcga ccggcggctt
      961 caccgacgtg ctgttgcagc gcggcgcgag ccgcgtctac gctctcgacg tgggtcgcgg
     1021 acagcttgcc gagtcgttgc gccgggatcc ccgggtcgtc tcgatggagc gccacaacgc
     1081 ccgagacctg actgccacgt cgctgcccga gccgatctcg ctcgccacgg tcgacgtcgc
     1141 gttcatctcg gcgcggctgc tcatcggtcc gatcgtctcg acgttccgcg acggcggcgg
     1201 cgacctcgtc atcctcgtca agccgcagtt cgaggcgggc cgcgccgagg tagccgcagg
     1261 tcgcggcgtc gtccgcgacc cggctgtcca cgagcgcgtc gtccgggagg tcggccaggc
     1321 tgccgcgggg cacggcctcg aggtcggcgg gacgatcccg tcgcccatcc tcggtccgga
     1381 gggcaaccgc gagttcctcc tgtgggcgcg agcgcccggc ggtccggcat gagcgggttg
     1441 gcagcgtgaa cgcggcgcgg cggatcgggt tcgcctacaa cccgacgatc gaggcggcgc
     1501 tcgacctgcg ggaacgcgcc gcgggctggg tcgagcagcg cggcctcgag cactgggcat
     1561 cggcggccgc cgacaccgcg gtgctccagg cgcagctgcc cgggacagac gtcctcgtcg
     1621 tcctg
//
LOCUS       DATDDI010000385         1734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_528457, whole genome shotgun sequence.
ACCESSION   DATDDI010000385 DATDDI010000000
VERSION     DATDDI010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528457"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1734
                     /gene="glgP"
                     /locus_tag="VIU37_05550"
     CDS             <1..>1734
                     /gene="glgP"
                     /locus_tag="VIU37_05550"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HEY6013446.1"
                     /translation="ISGPTEWSRLLDDEKFLAEYHDVLASFDRYMANGSDHWFHRRYG
                     SALDGPIAYFCAEYGFHESLGIYSGGLGVLAGDHMKSASDMALPAIGVGLLYRKGYFR
                     QSIDADGHQEHNYPDYDLGRLPLSRVQDSSGVPLTVTVELAGRDLTVAVWLAQVGRVP
                     VLLLDTDTPTNADYDRPITNILYVRGREMRLHQEIVLGVGGVRALRALGLAPAVWHLN
                     EGHSALLLAERAREYVEEGQTLDEALARVRTDSVFTIHTPVSAGNERFDADLVRRVAG
                     PLLDSAGVPVERVLQIGLGVDGDPSQFDMTAFSLRLTSGANAVSHLHSETANATWQGV
                     IQQPILGLTNGVHAPTWIGSPIVELLEDLGANLDDLDASLEAGRFWERLERIDGRDLW
                     DAHLRQKRELALFARGRLRSQFARHGEAPAVLAELETALDPDILTIGFARRFATYKRA
                     GLLFSDMDRLGRLIWDEQRPIQIVFAGKAHPADRPGQKVIQEIFQRSRSPELRGRVFI
                     LEDYDMRVGRFLVQGVDVWLNNPRRPLEASGTSGMKAAQNGVPSVSVLDGWWDEGYEG
                     DNGWAIGGRETV"
BASE COUNT          265 a          601 c          616 g          252 t
ORIGIN      
        1 gatcagcgga ccgaccgagt ggtcgcggct gctcgacgac gagaagttcc tggccgaata
       61 ccacgacgtc ctcgcgagct tcgaccggta catggccaac ggctcggacc actggttcca
      121 tcgccgctac gggtcggccc tcgacgggcc gatcgcgtat ttctgcgcgg aatacggctt
      181 ccacgagtcg ctcgggatct attcgggcgg tctcggcgtg ctggccggcg accacatgaa
      241 gtcggcgagc gacatggccc tcccggcgat cggggtggga ctgctctacc gcaagggcta
      301 cttccgtcaa tcgatcgacg ccgacggcca ccaggagcac aactacccgg actatgacct
      361 gggccggctg ccgctcagcc gggtccagga ttcctccggc gtgccgctga cggtgaccgt
      421 cgagctggcc ggccgcgacc tgaccgtggc ggtctggctg gcccaggtgg gccgggtgcc
      481 ggtcctcctg ctcgacaccg acacgccgac caacgcggac tacgaccgcc cgatcaccaa
      541 catcctgtac gtccgcggcc gcgagatgcg gctccaccag gagatcgtgc tgggcgtggg
      601 tggcgttcgg gcgctgcgag ccctgggcct ggcgccggcg gtctggcacc tcaacgaggg
      661 gcattcggca ctcctgctgg cggagcgggc gcgcgagtac gtcgaggagg ggcagacact
      721 cgacgaggcg ctcgccaggg tccggaccga cagcgtgttc acgatccaca cgccggtctc
      781 ggccggcaac gagcggttcg acgcggacct cgtccggcgc gtcgcggggc cgctcctcga
      841 cagcgcgggc gtgcccgtcg aacgcgtcct ccagatcggt ctcggcgtcg acggcgaccc
      901 gagccagttc gacatgacgg ccttctcgct ccggctgacc agcggggcca acgcggtcag
      961 ccacctccac agcgagacgg ccaacgcgac ctggcagggc gtgatccagc aaccgatcct
     1021 cgggctgacg aacggcgtcc acgccccgac ctggatcggc tcgccgatcg tcgagctgct
     1081 cgaggatctc ggggccaacc tcgacgacct cgatgccagt ctcgaggccg gacggttctg
     1141 ggagcgtctc gagcgcatcg acggccgcga cctgtgggac gcccacctgc ggcagaagcg
     1201 cgagctcgcg ctcttcgcgc gaggccggct gcgcagccag ttcgcgcgcc acggcgaggc
     1261 cccggcggtg ctcgccgagc tcgagacggc gctcgacccg gacatcctga cgatcggctt
     1321 cgcgcgacgg ttcgccacgt acaagcgggc cgggttgctg ttcagcgaca tggaccggct
     1381 ggggcggctg atctgggacg agcagcgacc gatccagatc gtgttcgccg gcaaggcgca
     1441 cccggccgac cgcccgggcc agaaggtgat ccaggagatc ttccagcggt cgcggtcgcc
     1501 ggagctccgg ggccgggtct tcatcctcga ggactacgac atgcgggtcg gccggttcct
     1561 ggtccagggt gtcgatgtct ggctcaacaa tccacgccgc ccgctcgagg catccgggac
     1621 gtcgggcatg aaggcggctc agaacggcgt acccagcgtg agcgtgctcg acggctggtg
     1681 ggacgagggc tacgagggcg acaacggctg ggcgatcggc ggtcgcgaga cggt
//
LOCUS       DATDDI010000386         1878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_278970, whole genome shotgun sequence.
ACCESSION   DATDDI010000386 DATDDI010000000
VERSION     DATDDI010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278970"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..963
                     /locus_tag="VIU37_05555"
     CDS             <1..963
                     /locus_tag="VIU37_05555"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6013447.1"
                     /translation="VMWNYMGFELATVAGDEIVNPKRTYPRAMLVVLLLAIATYVLPV
                     VAGLYGGAGADGRYLLWGVEAGDGQTIGTVMTDAGVDTTTLEGWGVDPEGTSGWYLPD
                     VAKAVGDNAVGGPGSDLGNVLGNLMTIAAALSMIGLFIGNSLGASRVPFALAEDGMMP
                     KWLVKVSPRYGTPWVAIVVAGVFYTIFATNAFEFLVVADVLLNSLVIVACFFAVWRLR
                     VTRPELTRPEIHRQRIPGGWPGLVLATAGPVLVLGIAVYSQIVDVGWDAVTLSIGAIV
                     VGAILYFPLRAYTKPGVPDVDPYHEEAVRPEVPVPAPIQAPRAV"
     gene            1031..>1878
                     /locus_tag="VIU37_05560"
     CDS             1031..>1878
                     /locus_tag="VIU37_05560"
                     /inference="COORDINATES: protein motif:HMM:NF015400.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HEY6013448.1"
                     /translation="MKILLVGVGGVGEAIAVIAQDRPWLETMVLSDINVDRANEVRGR
                     LRHPDRFPVERVDATDRAMIAGLARKYDVDLVMNAVEPLFNEQIFDAAFDAGCAYMDM
                     AMTLSTPHPEDPLHVPGVKLGDYQFERSDAWKAKGLLALVGMGVEPGLADVFARHAAK
                     HLFDRIDEIGVRDGANLEVRGYEFAPNFSIWTTIEECLNPPVIWERDRGWYTTEPFSE
                     PEVFDFPEGIGPVECVNVEHEEVLLMPRWVDAKRVTFKYGLGEEMIGILRTLHTLGLD
                     RTDPVAV"
BASE COUNT          269 a          648 c          657 g          304 t
ORIGIN      
        1 gtgatgtgga actacatggg gttcgagctg gccaccgtcg cgggtgacga gatcgtcaac
       61 cccaaacgga cctacccgcg ggcgatgctc gtcgtcctgc tcctcgcgat cgcgacgtac
      121 gtcctgccgg tcgtcgccgg cctgtacggc ggcgcgggcg ccgacggccg gtacctgctg
      181 tggggcgtcg aggccggtga cggccagacg atcggcacgg tcatgaccga cgccggtgtc
      241 gacaccacga ccctcgaggg ctggggcgtc gaccctgagg ggacgagcgg ctggtacctc
      301 cccgacgtcg cgaaggccgt cggcgacaac gctgtcggcg ggcccggcag cgacctgggc
      361 aacgtcctcg ggaacctgat gaccatcgcc gcggcgctga gcatgatcgg cctgttcatc
      421 ggcaacagcc ttggagcttc gcgcgtcccg ttcgcgctcg ccgaggatgg catgatgccg
      481 aagtggctgg tcaaggtgag tccgcgttac gggacgccgt gggtggcgat cgtcgtggcc
      541 ggcgtcttct acacgatctt cgcgacgaac gcgttcgagt tcctcgtcgt tgcggacgtg
      601 ctcctcaatt ccctcgtgat cgtggcctgc ttcttcgcgg tctggcggct gcgggtcacg
      661 cgacccgagc tgacccggcc ggagatccat cgccagcgga taccgggcgg ctggcccggc
      721 ctcgtccttg ccacggcggg tcccgtcctc gtgctgggga tcgccgtgta cagccagatc
      781 gtggacgtcg gctgggacgc ggtgacgctg tcgatcggcg ccatcgtggt gggtgcgatc
      841 ctctacttcc cgctccgcgc ctacaccaag cccggggtgc ccgacgtcga cccgtaccac
      901 gaggaggccg ttcgtcccga ggtcccggtg ccggctccga tccaggcacc gcgagccgtc
      961 tagcgcggcg cctgccgccc gtacccccgc agtccgcccg cggcacccgc cgcgggcacg
     1021 aaggagtggc atgaagatcc tgttggtcgg cgtcggtggc gtgggcgagg cgatcgccgt
     1081 catcgcgcag gatcgcccgt ggctcgagac catggtgctg tcggacatca acgtggaccg
     1141 tgcgaacgag gtccgggggc gcctgcgtca cccggaccgc ttcccggtgg agcgggtcga
     1201 cgcgaccgat cgcgccatga tcgccgggct cgcccggaag tacgacgtcg acctcgtcat
     1261 gaacgcggtc gagcccctgt tcaacgagca gatcttcgac gccgccttcg acgccggctg
     1321 cgcgtacatg gacatggcga tgaccctgtc gaccccgcac ccggaggacc ccctccacgt
     1381 ccccggcgtg aagctcggcg actaccagtt cgagcgctcg gacgcctgga aggcgaaggg
     1441 cctgctcgcg ctcgtcggca tgggcgtgga gcccggtctg gccgacgtgt tcgcgcgcca
     1501 cgccgcgaag cacctgttcg atcgcatcga cgagatcggc gtccgcgacg gcgcgaacct
     1561 cgaggtccgc ggctacgagt tcgcgccgaa cttctccatc tggacgacga tcgaggagtg
     1621 cctcaacccg ccggtgatct gggagaggga ccgtggctgg tacaccaccg agcccttctc
     1681 ggagccggag gtcttcgact tccccgaggg gatcggcccg gtcgagtgcg tcaacgtcga
     1741 gcacgaggag gtgctcctca tgccgcgctg ggtcgacgcg aagcgggtga ccttcaagta
     1801 cggactcggc gaggagatga tcggcatcct ccggacgctg cacaccctcg gcctggaccg
     1861 gaccgacccg gtcgcggt
//
LOCUS       DATDDI010000387         2098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_507934, whole genome shotgun sequence.
ACCESSION   DATDDI010000387 DATDDI010000000
VERSION     DATDDI010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507934"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..992
                     /locus_tag="VIU37_05565"
     CDS             <1..992
                     /locus_tag="VIU37_05565"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: protein motif:HMM:NF005589.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEY6013449.1"
                     /translation="AGLDFEAMTQEQLDRVGVVINTGGGGVEQIIDGTHVYDSKGPRF
                     VSPFAVPALSGSMAACMLSMKYALSGPVITQVAACATSVIAFHDALRLIQTGECDVVL
                     TGGSEAPINTMGVAALSNMTALSKRNDSPETASRPFDATRDGFVLGEGAGVAIVESLA
                     HARARGATPIAEVLGGALTADAFHISAPDPTGRGQTRAMTLALQHSGVAPDEIDYIVA
                     HGTATGLNDSTETKAIKAAYGAHAYKVAISSPKSMIGHLVGAAGIASALAAIGAIRDQ
                     VIPPTANLHTPDPECDLDYVPLVARPAKVETAAINGFGFGGQNAVAVFRKVVE"
     gene            complement(1012..1506)
                     /locus_tag="VIU37_05570"
     CDS             complement(1012..1506)
                     /locus_tag="VIU37_05570"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEY6013450.1"
                     /translation="MHDHRHESAPDPRDLPGPYRHRVEIVVRFADTDAMGHVNNAIYL
                     TYCEVARIRYWTEVTGEPVRLGTEGAESLILAEARITYRAPAFHGEVVTVESRAVRIG
                     RSSFTLDHRLLAAVPGGESPRLVAVSESVLVRYDYATARPVALSPAHVAAIEAYEGRG
                     LRDT"
     gene            1608..>2098
                     /locus_tag="VIU37_05575"
     CDS             1608..>2098
                     /locus_tag="VIU37_05575"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEY6013451.1"
                     /translation="MTSTTPPIEIISFPVEGMTCASCVNRITRFLQKVDGVDVAEVNL
                     ATETATVRFDPSRLGAADLAAAVDAAGYVARLDQQATDGGDAAIEQIAEARTDRDEAA
                     ARHLASLRRRLLVAGALTVPILIGLARMTVAPGLPSIFSEPLFQLALATPIQFWAGWP
                     FLVG"
BASE COUNT          307 a          756 c          731 g          304 t
ORIGIN      
        1 acgccgggct cgatttcgag gcgatgaccc aggagcagct ggatcgcgtc ggcgtcgtga
       61 tcaacacggg cggcggtggc gtcgagcaga tcatcgacgg gacgcacgtc tacgacagca
      121 agggcccgcg gttcgtcagc ccgttcgccg tcccggcgct gtcgggatcg atggccgcct
      181 gcatgctgtc gatgaagtac gcgctgagcg gtccggtgat cacccaggtg gccgcctgcg
      241 ccacgtcggt gatcgcgttc cacgatgccc tgcggctgat ccagacgggc gaatgcgacg
      301 tcgtcctgac cggcggctcc gaggccccga tcaacaccat gggcgtggcc gccctgtcga
      361 acatgacggc cctctcgaag cgcaacgact cgcccgagac ggcctcgcgg ccgttcgacg
      421 cgacgcgcga cgggttcgtc ctcggcgagg gcgctggcgt ggcgatcgtc gaatcgctcg
      481 cccacgcgcg ggcccgcggc gcgacgccca tcgccgaggt gctcggcggg gccctgaccg
      541 ccgacgcgtt ccatatcagc gcgccggacc cgacgggccg tggccagacc cgggcgatga
      601 cgctcgcgct ccagcactcg ggcgtcgctc ccgacgagat cgactacatc gtggcccacg
      661 gcaccgcgac cgggctcaac gactcgaccg agaccaaggc gatcaaggcg gcctacgggg
      721 cgcatgccta caaagtcgcg atcagctcgc ccaagtcgat gatcggccac ctcgtgggcg
      781 ccgccgggat cgcctcggcg ctggccgcga tcggggccat ccgcgaccag gtcatcccgc
      841 cgacggcgaa cctccacacc ccggatcccg agtgcgacct cgactacgtc ccgctggtcg
      901 cccggcccgc gaaggtcgag accgccgcca tcaacggctt cggcttcggt ggccagaacg
      961 ccgtggcggt cttccgcaag gtcgtcgaat aggtcgagac ccggtcgccg gctaggtgtc
     1021 gcgcaggccg cgaccctcgt acgcctcgat cgccgcgacg tgggccggcg acagcgcgac
     1081 cgggcgtgcc gtcgcgtagt cgtaccggac gagcacggac tcgctgaccg cgaccaggcg
     1141 gggtgattcg ccgcccggga ccgcggcgag cagccggtga tcgagcgtga acgacgatcg
     1201 gccgatccgg acggcccggc tctcgaccgt cacgacctcg ccgtggaatg ccggtgcccg
     1261 gtaggtgatc cgcgcctcgg ccaggatcag gctctcggcg ccctccgtcc cgaggcggac
     1321 gggctcgccg gtgacctcgg tccagtaccg gatccgggcg acctcgcagt aggtcaggta
     1381 gatggcgttg ttgacgtgcc ccatcgcgtc ggtgtcggcg aacctgacca cgatctcgac
     1441 gcggtggcgg tacggacccg gcaggtcgcg gggatcgggc gcggattcgt gccgatggtc
     1501 atgcatggtc ccggagtgta cgggctattg gtcactcgac agaagagggg tcgacgtgcg
     1561 aggatactcc cagggagtat tcctccatcg ccgccgagcc ggagcccatg accagcacga
     1621 ccccgcccat cgagatcatc tcgttccccg tcgaagggat gacctgcgcg tcctgcgtca
     1681 accggatcac ccggttcctg cagaaggtcg acggcgtcga cgtcgccgaa gtcaacctgg
     1741 cgacggagac ggcaaccgtg cgcttcgatc cgtcccgcct cggagcggcg gacctcgccg
     1801 cagccgttga cgccgcgggc tatgtcgcgc ggctggacca gcaggcgacc gacggtggcg
     1861 atgccgccat cgagcagatc gccgaggccc gaaccgatcg cgacgaggcg gccgcccgcc
     1921 acctggcgtc gctccgtcgg cggctgctcg tggccggggc gctcaccgtc cccatcctga
     1981 tcggcctggc gcgcatgacg gtcgcccccg ggctgccgtc gatcttctcg gagcccctgt
     2041 tccagctggc gctggcgacg ccgatccagt tctgggcggg ctggccgttc ctcgtcgg
//
LOCUS       DATDDI010000388         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_487122, whole genome shotgun sequence.
ACCESSION   DATDDI010000388 DATDDI010000000
VERSION     DATDDI010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487122"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..1018)
                     /locus_tag="VIU37_05580"
     CDS             complement(5..1018)
                     /locus_tag="VIU37_05580"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY6013452.1"
                     /translation="MRIAHVRERHAPAGTNWRLAAALDAAEQPARWLDLEVARRRSVA
                     ADARLAHNSVLHRQPIGTLDDHLARGLRIDALRELVDGFAARSDDDDAVLGSANLAFG
                     PPVLRPPSVRDFYAFEGHVRTMWERRGGEVPETWYRLPVFYFSNTSEIRGPDEPVWCP
                     AASSELDYELEVAALVDTPAIDLAAERAEDAIGGFTIFNDWSARDLQREETVVRLGPA
                     KGKDFASSFGPWLVTPDELADARHASGFDLSMAAEVNGIETSRGRWSDVQFSYGQMLA
                     RASADARLRPGDLVGSGTVGGGSLLENREATLGRYLEPGDEVVLRVERLGALRTPIVA
                     RPA"
     gene            1236..>1533
                     /locus_tag="VIU37_05585"
     CDS             1236..>1533
                     /locus_tag="VIU37_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013453.1"
                     /translation="MKPSTRRSVALVGSLVLAGSIVPGAAFAVVPNGTHDGPDGPQSQ
                     YTCSAWGWAVDPDDRSAVVTVRVLVDGVELRRGPADQFRQDLLDTGTSPTGKASF"
BASE COUNT          215 a          551 c          566 g          201 t
ORIGIN      
        1 cgggtcaggc cggccgggcg acgatcggag tccgcagcgc gccgagccgc tcgaccctga
       61 ggaccacctc gtcgccgggt tccaggtagc gtccgagcgt cgcctcgcgg ttctcgagca
      121 aggaaccgcc gcccaccgtg ccgctcccga cgaggtcgcc ggggcgcagc cgtgcgtccg
      181 cggaggcgcg ggccagcatc tggccgtacg agaactggac gtccgaccac ctcccgcggc
      241 tcgtctcgat cccgttgacc tcggcggcca tcgacaggtc gaagccgctg gcgtgtcgcg
      301 catcggcgag ctcgtccggc gtcaccagcc acggcccgaa cgagctggcg aagtccttgc
      361 ccttggccgg gccgagacgc acgaccgtct cctcgcgctg caggtcgcgg gccgaccagt
      421 cgttgaagat cgtgaacccg ccgatggcgt cctcggcgcg ctccgcggcg aggtcgatcg
      481 ccggcgtgtc gacgagggcc gcgacctcca gctcgtagtc gagctcggac gacgccgccg
      541 gacaccagac cggctcgtcc gggccgcgga tctcggaggt gttgctgaag tagaagacgg
      601 gcaaccggta ccaggtttcg gggacctcgc cgccgcgccg ctcccacatc gtccggacat
      661 ggccctcgaa cgcatagaag tcgcggaccg agggcgggcg gaggaccggc gggccaaagg
      721 ccaggttcgc cgacccgagg acagcgtcgt cgtcatccga cctcgcggcg aagccgtcga
      781 ccagctcccg gagggcgtcg atgcgcagac cacgggcgag atggtcatcg agcgtgccga
      841 tcggctggcg gtggagcacc gagttgtggg ccagtcgggc gtcggccgcc accgagcggc
      901 ggcgagcgac ttcgaggtcg agccagcggg cgggctgctc ggcggcatcg agcgcggcgg
      961 ccaggcgcca gttggtgccc gccggagcgt ggcgctcgcg aacgtgggcg atcctcattc
     1021 ggccacgctc agggccgatc gaccggtagc ggccggacct tgaccatgga cggtggtccc
     1081 tcccttcgat cggcgcgacg ggccgcgcca tgcgcagccc cgccggcccc ggattgtagg
     1141 cacgccggcc ggtccgggga cggggcgatc aggacatccg gctcttgcgc ccggacggca
     1201 ccacggccaa cgtgcgagct tggggaggtg tcggcatgaa gccaagcacg cgcaggtcgg
     1261 tggccctcgt cgggagtctc gtcctcgcgg gatcgatcgt cccgggcgcg gcgttcgccg
     1321 tcgtgcccaa cgggacccac gacggtcccg acgggccgca atcgcagtac acctgctcgg
     1381 cctggggctg ggccgtcgat cccgacgatc ggagcgccgt ggtgaccgtg cgggtcctcg
     1441 tcgacggggt cgagctccgt cgcggaccgg ccgaccagtt ccgccaggac ctcctcgaca
     1501 ccgggaccag cccgacgggc aaggcctcgt tcg
//
LOCUS       DATDDI010000389         4276 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_50099, whole genome shotgun sequence.
ACCESSION   DATDDI010000389 DATDDI010000000
VERSION     DATDDI010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4276
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50099"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VIU37_05590"
     CDS             <1..365
                     /locus_tag="VIU37_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013454.1"
                     /translation="RGAWASWNVDRVDCRRPTDALTMTYHMNRLQSLPGPIEYSVSVN
                     PGRRLDPSTILVDRRMSHPMYTFRTLDAQASVANLQGWRRTWYAGAHLGYGFHEDGCR
                     SGFEVAALLADARTERAA"
     gene            362..1102
                     /locus_tag="VIU37_05595"
     CDS             362..1102
                     /locus_tag="VIU37_05595"
                     /inference="COORDINATES: protein motif:HMM:NF018770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 domain-containing protein"
                     /protein_id="HEY6013455.1"
                     /translation="MRSHLLEGLVRHRRMRPFVYALEHGVYYVALDLDELDDVDRSSW
                     VLGRNRRRLLVLRDNDHLVPPAQDIRASFLDHLRAQGEDPEGWQVTLVTNLRVLGYVF
                     NPASFFLCRDRTGALRVVVVEVHNTHGERHLYTLRPRDNAADFRASMSKEFYVSPFIE
                     MRGGYMVRVRDEASRLRITINQEQPDGLLLHTSLDLVRRPLTDRNLLRMLIRHPFVTH
                     KTIGMIHWHALRLWLRGARFHRHREVAR"
     gene            1099..2340
                     /locus_tag="VIU37_05600"
     CDS             1099..2340
                     /locus_tag="VIU37_05600"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEY6013456.1"
                     /translation="MSAQTITTRRTGFVDALLERAAWRVGLAAAERIRVGRLTVVLPD
                     GSRRTYGDAASAMTAEIQIHDREALVRMLVHGETGGGEGYTDGLWSSPDLAGLLRLAA
                     LNRERLGLSDGWFRVPAQLGRTLAHRRRRNTKANARRNIAAHYDLGNDFYRLFLDETM
                     TYSSAVFATPGQALADAQRNKYRIIAEGAGLERGQHVLEIGSGWGGFALYAAGELGCR
                     VTSITISKEQHELARDRVRAAGLEDLVDIRLQDYRDVRGTYDAIVSIEMLEAVGAAYF
                     AAFFKACDAALAPGGRMSLQTITFPDATYERQLHGANWIQTYIFPGGLCPSLAVIERA
                     TRDTRLLVSRVSDIAPDYVRTLRAWRTRFIDQAAAVRAMGFDERFIRMWEYYLALSEA
                     GFATGISQDLQIVFEKRRGLG"
     gene            2340..2756
                     /locus_tag="VIU37_05605"
     CDS             2340..2756
                     /locus_tag="VIU37_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013457.1"
                     /translation="MAGQAARRFPFRLGRRTRLVLRVFGVKPGNAYVDLGDTLDAHFG
                     FFRFQTPSSNLASWRIEGPWRWITAVGVRLSWRSHDLTFGGTNEGGVRLDLREPVAWH
                     GRQIDALYLTVDDTAGFTAALTELGLAGIDARGQNS"
     gene            complement(2865..3482)
                     /locus_tag="VIU37_05610"
     CDS             complement(2865..3482)
                     /locus_tag="VIU37_05610"
                     /inference="COORDINATES: protein motif:HMM:NF014906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEY6013458.1"
                     /translation="MLRAAVKLADKGGLASLSMRKLGQALGVEAMSLYKHVAGKDDIL
                     DGLVDAVFAEIGLPAAGADWRTAMRERAISARQVLLRHPWAIGLLDSRRNAGPATIRH
                     HDAVIGSLRRGGFSIEMAAHAFSLLDSYIYGFTLQETSLPFSTADEVADIAATMLPAA
                     PAAEYPYFTEMLTEYALKPGYSYGAEFEFGLDLILDGLERIRSLS"
     gene            3641..4126
                     /locus_tag="VIU37_05615"
     CDS             3641..4126
                     /locus_tag="VIU37_05615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013459.1"
                     /translation="MLGQFIMIVGGLVVGVVAAAVAVLLGVRARRPLAVDVLRRFSRL
                     FNRMQMQTAGSPGAYASVIRHVGRRSGRTYQTPVGAVPIEDGFVIALPYGTQSNWVRN
                     VLASGAATLINDGHAYRVDRPELIPLETVANRFSASDQRSQRFFRVGQCLRIRRIAEA
                     A"
BASE COUNT          658 a         1460 c         1464 g          694 t
ORIGIN      
        1 ggcgcggcgc ctgggcatcg tggaacgtgg atcgggtcga ttgtcgtcgg ccaaccgatg
       61 ccctcacgat gacctaccac atgaaccgcc tgcagtcgct gcccggaccg atcgagtact
      121 ccgtgtcggt caacccgggc aggcggctcg acccgtcgac gatcctcgtc gatcgccgga
      181 tgagccaccc gatgtacacg ttccggacgc tcgacgcgca ggcatcggtc gcgaacctcc
      241 agggctggcg tcggacgtgg tacgccggcg cccatctcgg gtacggcttc cacgaggacg
      301 gctgccggtc cggcttcgag gtcgcggcgc tgctcgccga cgcgcgcacg gagcgggcgg
      361 catgaggtcg cacctcctcg aaggcctcgt ccgccatcgc cgcatgcgcc cgttcgtcta
      421 cgccctggaa cacggcgtgt attacgtggc gctcgacctc gacgagctcg acgacgtgga
      481 ccgctcgtcg tgggtcctcg gccggaaccg ccggcgactg ctcgtcctcc gtgacaacga
      541 ccatctcgtc ccgcccgccc aggacatccg ggcctcgttc ctggaccacc tgcgggcgca
      601 gggcgaggac ccggagggct ggcaggtcac gctggtgacg aacctgcgtg tgctcgggta
      661 tgtcttcaat ccggcgagct tcttcctctg ccgcgaccgg acgggggccc tccgggtcgt
      721 ggtggtcgag gtgcacaaca cccacggcga gcgccatctg tacacgctcc ggccgcgtga
      781 caacgccgcc gacttccggg cctcgatgtc gaaggagttc tacgtgtcgc cgttcatcga
      841 gatgcgcggc ggatacatgg tccgcgtgcg tgacgaggcg tcgcggctcc gcatcacgat
      901 caaccaggag cagccggacg gactgctcct ccacacgagc ctggatctcg tgcgccgacc
      961 cttgacggac cgcaacctgt tgcggatgct gattcgccat ccgttcgtga cccacaagac
     1021 catcggcatg atccactggc acgcgctccg gctgtggctg cgcggcgccc gattccaccg
     1081 gcatcgcgag gtggcccgat gagcgcgcag acaatcacca cacggcgaac gggattcgtc
     1141 gacgcgctgc tggagcgggc ggcctggcgc gtcggcctgg ccgcggcgga acggatccgc
     1201 gtcggtcggc tgaccgtggt cctgccggac ggctcgcggc gcacgtacgg tgacgcggcc
     1261 tcggccatga ccgccgagat ccaaatccac gaccgagagg cgctcgtccg gatgctcgtt
     1321 cacggtgaga cgggtggcgg ggagggctac acggacgggc tctggtccag ccccgacctg
     1381 gccgggttgc tgcgtttggc cgcgctgaac cgggagcggc tcggcctgtc cgacggctgg
     1441 ttccgcgtcc cggcccagct cgggcggacg ctggcccacc ggcggcggcg caacaccaag
     1501 gcgaacgcgc gacggaacat cgccgcccac tacgaccttg gcaacgactt ctaccggctc
     1561 ttcctcgacg agacgatgac ctactccagc gccgtgttcg cgacgccggg ccaggcgctc
     1621 gccgatgcgc agcggaacaa gtaccggatc atcgccgaag gcgccggcct cgagcgaggc
     1681 cagcacgtgc tcgagatcgg ttcgggatgg ggcggcttcg cgctgtacgc ggccggcgag
     1741 ctcggctgtc gtgtgacgtc gatcacgatc tcgaaggaac agcacgagct cgcgcgggac
     1801 cgggttcgcg ccgccggcct agaggacctg gtggacatcc ggctccagga ttaccgcgat
     1861 gtccgcggca cctatgacgc gatcgtgtcg atcgagatgc tcgaggcggt cggcgccgcc
     1921 tacttcgcgg cgttcttcaa ggcgtgcgac gcggccctgg cacccggcgg acggatgagc
     1981 ctgcagacca tcaccttccc ggacgccacc tacgagcgac agctccacgg tgccaactgg
     2041 atccagacct acatcttccc cggcgggctg tgcccgtcgc tcgccgtcat cgaacgggcc
     2101 acgcgcgaca cccgcctgct cgtcagcagg gtctcggata tcgcccccga ctacgtcagg
     2161 acgctgcgcg cctggcgaac ccggttcatc gaccaggccg ccgcggtccg ggcgatgggc
     2221 ttcgatgaac ggttcatccg gatgtgggag tactaccttg ccctgagcga ggccggtttc
     2281 gcgaccggca tcagccagga tctccagatc gtgttcgaga agcgaagagg gctcgggtga
     2341 tggccgggca ggctgcacgt cgctttccat tccggctcgg ccggcgcacg cggctcgtcc
     2401 tgcgagtctt cggggtcaag cccgggaatg cctacgtcga tctcggcgac accctggacg
     2461 cgcacttcgg gttcttcagg ttccagacgc catcgtccaa ccttgcgtcg tggcgcatcg
     2521 agggcccctg gcgctggatc acggccgtcg gcgtcaggct cagctggcgg tcgcacgacc
     2581 tgaccttcgg agggacgaac gagggcggcg tccgactgga tctccgcgag ccggtggcct
     2641 ggcacggccg gcagatcgac gccctgtacc tgaccgtcga cgacacggcg ggcttcacgg
     2701 ccgccctgac cgagcttggg ctcgccggca tcgacgcgag aggccagaat tcgtgaccgg
     2761 ggagtctcct ggcggtccac cgcagccatc cggagccgct ggtggtgcag gtccacgttc
     2821 gccagagctg ggtcgagccg ccaacgatca catcgcaggc gaggtcagct caggctcctg
     2881 atgcgctcga gaccgtcgag gatgagatcg agcccgaact cgaactcggc tccgtacgag
     2941 tagccaggct tgagggcgta ctccgtcagc atctccgtga agtacgggta ctcggcggcg
     3001 ggcgccgccg gcagcatggt cgccgcgatg tcggctactt catccgcggt gctgaacggc
     3061 aggctcgtct cctggagcgt gaagccgtag atgtagctgt cgagcagcga gaaggcgtgg
     3121 gcggccattt cgatcgagaa gccgccccgc ctgaggctgc cgatcaccgc gtcatggtgg
     3181 cgaatggtcg ccgggccggc gttgcggcgc gagtcgagca ggccgatcgc ccacggatgg
     3241 cggaggagca cctgccgggc tgagatcgcg cgctcgcgca tcgcggttcg ccaatcggca
     3301 ccggcggcgg gcagaccgat ctcggcaaaa accgcatcga cgagaccgtc gaggatgtcg
     3361 tccttgccgg ccacgtgctt gtacagcgac atggcttcga cgcccagggc ttggccgagc
     3421 ttccgcatcg aaaggctcgc cagtccgccc ttgtccgcga gtttcacggc ggcacgcagc
     3481 acgcgctccc gactcagtcg cgtccggcgg cgcgggcgcg gatcagccgt ggccatcggc
     3541 attctccgtg gcgcccttga caggcttaca gtgtaatcgt aggcttacgc tgtcgtccat
     3601 ggcttacagt gtagcagcac ctcgatgctg gagaagggca atgctcggac agttcatcat
     3661 gatcgtcggc ggtctggtcg tgggcgtcgt ggcggcggcc gtcgccgtcc tgctcggcgt
     3721 cagggcgagg cgaccgctgg cggtcgacgt gctacggcgg ttcagccgcc tcttcaaccg
     3781 gatgcagatg cagacggctg ggtcacctgg cgcgtatgcc tccgtgatcc ggcatgtggg
     3841 ccggaggtcg ggtcgcacat accagacgcc cgtgggcgcc gtcccaatcg aggacggatt
     3901 cgtgatcgcc ctgccgtacg ggacgcagtc gaactgggtc aggaacgtgc tggcaagcgg
     3961 ggctgcaaca ctcatcaacg acggccacgc ctaccgggtg gaccggccgg agctcatccc
     4021 gctcgagacc gtcgcgaatc gcttctccgc ctccgatcaa cgcagccaac gattcttccg
     4081 ggtgggccaa tgcctgcgga tccggcggat cgccgaagcc gcgtagagcg atccgctcac
     4141 cgcgtgcgct ccgttccgct cagtggacga ggtcgtgctc catcgcccac agcgcagcgc
     4201 cggcccgggt ggaaacgccg atcttggtgt agacgtgctg gacgtggtgg tcgaccgtct
     4261 tcggcgtgat gaacag
//
LOCUS       DATDDI010000390         2311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_632849, whole genome shotgun sequence.
ACCESSION   DATDDI010000390 DATDDI010000000
VERSION     DATDDI010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632849"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..447
                     /locus_tag="VIU37_05620"
     CDS             13..447
                     /locus_tag="VIU37_05620"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S26 family signal peptidase"
                     /protein_id="HEY6013460.1"
                     /translation="MTGLSRFRGPWRIAVAEASMRPAVEPGDWLLVDPTVTHWPRRGS
                     IVVFREPDDDSLAIKRVAAGPGDRVPFAEGYLELAEDEAWLVSDATADETAAAGFGEP
                     IDSRRYGPVPVNLLVGRAWFRYAPLRRIGRIPRARAATQGSG"
     gene            complement(444..1343)
                     /locus_tag="VIU37_05625"
     CDS             complement(444..1343)
                     /locus_tag="VIU37_05625"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03560 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY6013461.1"
                     /translation="MQVGLMAPQGWKGEYDGWDPAAAWARTIELARNAESLGFESLWV
                     FDHFHTVPDPTDEITFEGFSVLTALAMATERVRLGHMVVCTGFRNPALTAKLSSTIDV
                     ISGGRFELGIGAGWKEEEWRAYGYGFPTLGERMAALGDHLEVIRAMFGPGRASYEGRY
                     AHVRGAINVPKGLQQPRIPIIVGGNGQRVTAGLAIRFADELNYVFLSPVEVAERIGAV
                     RARCETEGRDPATLRFSLYTRDEQMREAGRARTDVLGELASVGLDRIVCFPTRWSPTV
                     EAQEAFAEDCRAAGLTLGAPVGT"
     gene            1487..>2311
                     /locus_tag="VIU37_05630"
     CDS             1487..>2311
                     /locus_tag="VIU37_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013462.1"
                     /translation="MPTDHGFDPTAALPGPPDPWAYTGQPGHRPGPPYHMTEMIEAEP
                     ALAGRFLRREPAATGASALAAAVRDTASGGEPVVVTGCGTSEHGAQGTADILRDALRT
                     AGFAGAAVMAEQALELALDPPARGLVIGISHEGGTGATNAALSASRAAGAGTALVAAS
                     RRSPGGAIAELVLETGELDQSWCHTVGYLSPLLAAAQVAGLLTAHALDVDAVVGLLAA
                     GTRNTAGAERIAGELAGAAHLLVIASGADRPAGRELTLKVEEASWVPSVFRDLETFL"
BASE COUNT          300 a          862 c          834 g          315 t
ORIGIN      
        1 aggccccgtc gaatgacggg gctttcccgt ttccgcggtc cctggcgaat cgccgtcgcg
       61 gaggcgagca tgcgcccggc cgtggagccc ggcgactggc tgctcgtgga cccgacggtg
      121 acgcactggc cgcgtcgcgg ctcgatcgtg gtcttccgtg agccggacga cgattccctg
      181 gcgatcaagc gcgtggcggc cggaccgggc gatcgcgtcc cgttcgccga gggctacctc
      241 gagctcgccg aggacgaggc ctggctcgtg agcgacgcca ccgccgacga gacggccgcg
      301 gccgggttcg gcgagccgat cgactcgcga cggtacggcc cggtcccggt gaacctgctc
      361 gtggggcgcg cctggttccg ctatgcaccg ctgcgtcgga tcgggcggat cccacgagct
      421 cgcgcggcga cgcagggctc cggctaggtg ccgaccggcg ctccgagcgt caggccggcc
      481 gcgcggcagt cctcggcgaa cgcctcctgg gcctccaccg tcggcgacca gcgggtcggg
      541 aagcagacga tccggtccag cccgaccgat gccagctcgc ccaggacgtc ggtccgggcc
      601 cggcccgctt cgcgcatctg ctcgtcacgc gtgtagagcg agaagcggag cgtggccggg
      661 tcgcggccct cggtctcgca ccgcgcccgg accgcaccga tccgctcggc cacctcgacc
      721 ggcgagagga acacgtagtt gagctcgtcc gcgaaacgga tcgccaggcc tgccgtcacc
      781 cgctggccgt tgccgccgac gatgatcggg atgcgcggct gctggaggcc cttcggcacg
      841 ttgatcgcgc cacggacgtg ggcgtaccgg ccctcgtacg atgcgcgacc cggaccgaac
      901 atcgcgcgga tcacctcgag atggtcgcct agcgcggcca tccgctcgcc cagcgtgggg
      961 aagccgtagc cgtacgcccg ccactcctct tccttccatc cggcgccgat cccgagctcg
     1021 aaccgcccgc cgctgatcac gtcgatcgtc gacgacagct tggccgtcag ggccgggttg
     1081 cggaacccgg tgcagacgac catgtggccg aggcggacgc gttcggtcgc catggccagc
     1141 gcggtcagga ccgaaaagcc ctcgaacgtg atctcgtcgg tcgggtcggg cacggtgtgg
     1201 aagtgatcga acacccacag cgattcgaag ccgagcgatt cggcgttgcg cgccagctcg
     1261 atggtccgcg cccatgccgc ggccggatcc cacccgtcgt actcgccctt ccatccctgc
     1321 ggggccatca ggccaacctg catgcctacc tccttgcgac cgttcatggt gacgcgttcc
     1381 gggtctcgct gccacgacgg gcctggacgc tccgttgcgg gacgcgggcc atccgctggc
     1441 tgcccgggaa gcagccgtat gctcgcgacc tgtgaaggag ccgtcgatgc ccaccgacca
     1501 cggattcgat ccgaccgccg ccctaccggg cccgcccgac ccgtgggcct acacggggca
     1561 gccaggccac cgccccgggc cgccgtacca catgaccgag atgatcgagg ccgagccggc
     1621 gctcgccggt cggttcctgc gccgcgaacc ggcggccacg ggggccagcg cgctggctgc
     1681 cgcggtccgc gacacggcct ccggcggcga gccggtcgtg gtcaccggct gcgggacctc
     1741 ggagcacggc gcacagggca cggccgacat cctgcgcgac gccctgcgga cggccggctt
     1801 cgccggcgcg gccgtcatgg ccgagcaggc gctcgagctc gccctcgatc cgcccgcgcg
     1861 cggcctcgtg atcggcatct cgcacgaggg cgggacaggc gcgacgaacg cggcgctttc
     1921 cgcttcccgg gccgcgggcg cgggcacggc gctcgtcgcg gccagccgcc gatcacccgg
     1981 cggggccatc gccgagctcg tcctcgagac cggggagctc gaccagagct ggtgccatac
     2041 cgtcggatat ctgagtccgc tgctggcggc ggcccaggtc gcggggctcc tgacggccca
     2101 cgcgctcgac gtggacgcgg tggtcgggct gctggcggcg ggcactcgga ataccgcggg
     2161 cgcggagcgg atagccggcg agctcgcggg ggccgcgcac ctgctggtca tcgcctcggg
     2221 cgccgaccgg cccgccgggc gcgagctgac gctcaaggtc gaggaggcgt cgtgggtgcc
     2281 gtcggtcttc cgcgacctgg agacgttcct c
//
LOCUS       DATDDI010000391         2099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_8682, whole genome shotgun sequence.
ACCESSION   DATDDI010000391 DATDDI010000000
VERSION     DATDDI010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8682"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..244)
                     /locus_tag="VIU37_05635"
     CDS             complement(<1..244)
                     /locus_tag="VIU37_05635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013463.1"
                     /translation="MNRRGLLAAGGAVVSIASLRALTRRAARRLLEAPRVLPEEAGLR
                     PALDALGGEVVRVRARDGLRLSGRWLEAEPGDPDWAL"
     gene            complement(241..1146)
                     /locus_tag="VIU37_05640"
     CDS             complement(241..1146)
                     /locus_tag="VIU37_05640"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY6013464.1"
                     /translation="MEVPVVAAVAAFLVVVLLVIVYLSIRVVQQYEKMVVFRLGRTNE
                     NMVRDPGLRFLVPIIDRPVKVDVREQFIEVPSQTTITKDNAPISVDFLIYWRISDPLR
                     SVVNVANFPGALQGVATTTLRAVIGDILLDEVLSKREQINEVLRTKLDEVTERWGGKV
                     TTVEIREITPPRDVQDAMNRQLSAERTRRAVITESEGSRQAAINVAEGQKQSAILQAE
                     GDRQAAILRAEGFSEALTRIFKAATGVDQKTMSLQYLEALKALGSGPATKFIIPMEFT
                     RLLDPFREFLTPGAIEPGASAAPEA"
     gene            complement(1163..>2099)
                     /locus_tag="VIU37_05645"
     CDS             complement(1163..>2099)
                     /locus_tag="VIU37_05645"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEY6013465.1"
                     /translation="TITGTEGDKIRNDAIAKITSIAEARHRNVDWAVSAVRDARSSPV
                     SEAVRLGVVDGMASTLEEVLAFANGRQVEVAGQTMTLDLTDASPVEVGMNPFQQFIRL
                     LSDPTIAFLLFSAGSAGIIAELWSPNFVTGILGALALILAFIGLGALPLNVGGLLLIL
                     LAMVLFGLEVTVTSHGLLGVGGLVCFALGASALFTEPGDPFEPVVRVAPIVIVVTTAT
                     AAAFLALVVWAAVRSRTMLSPSGVVGSAATLPPGSMGIVRRPLEPLGSIHAAGEEWSA
                     RSVDGRPLDRGAQVRVVSTDGLTLLVEPSPPSTES"
BASE COUNT          326 a          734 c          741 g          298 t
ORIGIN      
        1 cgagcgccca gtccgggtcg ccgggctcgg cctccagcca acgcccgctg aggcggagcc
       61 cgtcgcgggc ccggacccgg acgacctcgc ccccgagggc gtcgagcgcc gggcgcaggc
      121 cggcttcctc gggcagcacg cgcggcgcct cgagcaggcg ccgcgcggca cggcgcgtca
      181 gcgcccggag cgacgcgatc gaaacgaccg cgccgccggc cgccagcaag cctcgccggt
      241 tcacgcctcg ggcgcggcgg atgctcccgg ctcgatggcg ccgggcgtca ggaactcgcg
      301 gaacggatcg agcagccggg tgaactccat cgggatgatg aacttggtcg ccggaccgct
      361 tccgagcgcc ttgagcgcct cgaggtactg gagcgacatc gtcttctggt cgaccccggt
      421 ggccgccttg aagatgcgcg tcagcgcctc gctgaagccc tcggcccgca ggatcgccgc
      481 ctgccggtca ccctcggcct ggaggatcgc cgactgcttc tggccttcgg ccacgttgat
      541 cgcggcctgg cgggagcctt ccgactcggt gatgaccgcg cgtcgggttc gttcggccga
      601 gagctgccgg ttcatcgcgt cctggacgtc gcgcggcggg gtgatctcgc ggatctcgac
      661 cgtcgtgacc ttgccgcccc agcgttccgt cacctcgtcg agcttggtcc gcaggacctc
      721 gttgatctgc tcgcgcttgg agagcacctc gtcgagcagg atgtcgccga tgaccgcgcg
      781 gagcgtcgtg gtcgccacgc cctggagggc gcccgggaag ttggcgacat tgaccacgct
      841 gcggagcggg tcggagatcc gccagtagat caggaagtcg acgctgatcg gggcgttgtc
      901 cttggtgatc gtggtctggc tggggacctc gatgaactgc tcgcggacgt ccaccttgac
      961 cggccggtcg atgatcggca cgaggaagcg caggcccggg tcacggacca tgttctcgtt
     1021 ggtgcgtccc aggcggaaca cgaccatctt ctcgtactgc tgcacgaccc ggatcgacag
     1081 gtagacgatc acgagcagga cgacgaccag gaacgcggcg accgcggcca caaccgggac
     1141 ttccatcaga ccctccgttc gatcacgatt ccgttgatgg cggactgggc tcgaccaaca
     1201 gggtcagccc atccgtcgag acgacgcgaa cttgtgcgcc acggtcgagc ggccggccgt
     1261 cgaccgagcg cgcggaccat tcctcgcccg cggcatggat cgatccgagc ggctccagcg
     1321 ggcggcggac gatgcccatc gatccgggtg gcagcgtggc cgccgagccg accaccccgc
     1381 tcggcgagag catggtccgg ctccggacgg cagcccacac gacgagggcg aggaacgcgg
     1441 ccgcggtcgc ggtggtcacc acgatcacga tcggggcgac ccggaccacg ggctcgaagg
     1501 ggtcgccggg ctcggtgaac aaggccgacg cgcccagcgc gaagcagacg aggccgccga
     1561 cgccaaggag accgtggctg gtcacggtca cctccagtcc gaacagcacc atcgccagca
     1621 ggatcagcag caggccgccc acgttgagcg gcagtgcccc gaggccgatg aacgcgagga
     1681 tcagcgccag cgcgccgagg atcccggtca cgaagttcgg gctccacagc tcggcgatga
     1741 tgccggccga ccccgcgctg aacagcagga aggcgatcgt cgggtcagac agcaaccgga
     1801 tgaactgctg gaacgggttc attccgacct cgaccgggct ggcgtcggtc aggtcgagcg
     1861 tcatcgtctg cccggcgacc tcgacctggc gcccgttggc aaaggcgagg acctcctcga
     1921 gggtcgacgc catgccatcc acgacgccga gcctgacggc ctcgctgacc ggcgacgacc
     1981 tcgcgtcgcg gacggccgag accgcccagt cgacgttgcg gtggcgggcc tccgcgatcg
     2041 acgtgatctt ggcgatcgcg tcgttgcgga tcttgtcgcc ctcggtgccg gtgatggtc
//
LOCUS       DATDDI010000392         1667 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_258344, whole genome shotgun sequence.
ACCESSION   DATDDI010000392 DATDDI010000000
VERSION     DATDDI010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258344"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /locus_tag="VIU37_05650"
     CDS             complement(<1..342)
                     /locus_tag="VIU37_05650"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013466.1"
                     /translation="MSPRGVSPLEGVAIRPAGEADLPDCERIWRDGLNDYLRRLNQLE
                     IPPENPGLRRLHAHTLATDPDRFAVAERAARVIAFGSAVLRADVGFLSMLFVDPSEQA
                     RGLGRALLDRIL"
     gene            complement(339..1403)
                     /gene="prfB"
                     /locus_tag="VIU37_05655"
                     /pseudo
     CDS             complement(339..1403)
                     /gene="prfB"
                     /locus_tag="VIU37_05655"
                     /inference="COORDINATES: protein motif:HMM:TIGR00020.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
     gene            complement(1464..>1667)
                     /locus_tag="VIU37_05660"
     CDS             complement(1464..>1667)
                     /locus_tag="VIU37_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013467.1"
                     /translation="TFVDLIACERDCRNCSYPAALDCDGNCGVCPHNGYCPCVNPVVA
                     RSKSALRLIELRPILLQDLQVRN"
BASE COUNT          219 a          584 c          594 g          270 t
ORIGIN      
        1 caggatccgg tccagcagcg cccgcccgag gccgcgagcc tgctccgacg ggtcgacgaa
       61 cagcatcgag aggaacccga cgtcggctcg caggaccgcc gagccgaagg cgatgacgcg
      121 ggccgctcgc tcggcgaccg cgaaccgatc cgggtcggtg gcgagggtgt gggcgtggag
      181 ccgccgcagg cccgggttct ctggcgggat ctcgagctgg ttcagccgcc ggaggtagtc
      241 gttcaggccg tcgcgccaga tccgctcgca gtcaggcagg tccgcctcgc ccgccggccg
      301 gatggcgacg ccctcgagcg ggctcacccc gcgcgggctc actcgggcga gctcgtatcg
      361 cgcgccgagc cgccaccggt ggcctctcgc tccagctcgg cctggatgaa ggcgtcgagg
      421 tcgccgttca ggaccccggt cgtgtcggac gtctcgacgt tcgtgcggag gtccttgacc
      481 atctggtacg ggtgcaggac gtagctccgg atctggttgc cccagcccgc ctcgacgtgc
      541 tcgccgcgga tcttgcggag ctcggcctcc ttctcctcga gcgcccgctc gagcagccgg
      601 cccttgagga ccttgatcgc gttctccttg ttctgggtct ggctccgctc gttctggctc
      661 tgggccacga tcccggtcgg caggtgggtc agccggaccg ccgagtcggt cttgttgacg
      721 tgctggccgc ccgcgccctg ggaccggaag gtgtcgaccc ggatctggtc ccaatccagc
      781 tcgatctcga tgtcctcgtc gacctccggc aggacctcga cgagggcgaa cgtcgtctgg
      841 cggcgcttct gggaatcgaa cgggctgatg cggacgaggc ggtggacgcc acgctccgcg
      901 cggagccagc cgtaggcgcc ccgccctgac accgccgtcg tgacgctctt gaggccggcc
      961 tgctcgccct cggtctggtc gaggatctcc gtcttgtaac ggtgtcgttc cgaccaccgc
     1021 aggtacatcc ggaggagcat ctcggcccag tcggtggcct cggtcccacc ggcgccggcg
     1081 ctgatcgtca ggatggccgg gcgatcgtcg tactcgcccg agaacagcag ctcggtccgt
     1141 tcgcgctcga agtcgtggat cagggcctcg ccttcgcggt ccagctccgc ccccagctcc
     1201 tcgtcggcgg actcctcgac gagcgcgctg agcgtctcca gctcggcggc gcgatcggcg
     1261 aggccgcccc agagctcgat gaccgcgcgc tcggcgtcgg cctcgcgcag cacctgctgc
     1321 gcggttcgct ggtcgtccca gaagccgggc gcggaggtca gggcctcgag ctcggcgagg
     1381 cgctgctgcc tggctgggag gtcaaagacg ccccgacgtc gaccggatcc gctcgaccag
     1441 gtcgcggacg cccgcggcgt ccatcagttc cggacctgga gatcctggag caggatcggt
     1501 cggagctcga tcaggcgcag ggccgacttg ctccgggcga cgacggggtt cacgcaggga
     1561 cagtagccgt tgtggggaca gacgccgcaa ttgccatcgc agtcgagggc ggcgggatag
     1621 ctgcagttcc ggcagtcgcg ttcacaggcg atcagatcga cgaaggt
//
LOCUS       DATDDI010000393         2955 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_591147, whole genome shotgun sequence.
ACCESSION   DATDDI010000393 DATDDI010000000
VERSION     DATDDI010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_591147"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..918
                     /locus_tag="VIU37_05665"
     CDS             151..918
                     /locus_tag="VIU37_05665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013468.1"
                     /translation="MGNRRKTPAQRASRKLEPAHAPAAGSIVIGYLHAGQISAYFTQS
                     ILGTVLYDRVHGRRVAGILNEWSSANVSNARNKIVTQFLEGYAGVADWLLFIDSDMGW
                     DPNAHERLLAVADPAKAPIVGGLCFGTSEDALFPTIYSMGALKDERPITMRLLDYPED
                     TMLRCAATGAAFVLIHRTVLEQMREAAFNPAFPWFQETELSGQPCSEDITFCLRAGLL
                     GMPVHVHTGVHIGHHKSHLLTRDKFRAQTPISEEEAT"
     gene            915..1454
                     /locus_tag="VIU37_05670"
     CDS             915..1454
                     /locus_tag="VIU37_05670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013469.1"
                     /translation="MTLVLLDITTMRRALGITADTVDTDLTRYMTEAEEKVAQIVGPL
                     APTAVTEVMRGAGTLVLTTLPVISLTSVTGEFVGSISNTLVTVNAYGVVRPVRFQVVL
                     FDDYYTVVYQAGWVTATCPTGFTTAAELICKDRWAARNGNSTRRQGGDETVDVPGVGR
                     IPELAWSMLQPYAHGPSVG"
     gene            1456..1923
                     /locus_tag="VIU37_05675"
     CDS             1456..1923
                     /locus_tag="VIU37_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013470.1"
                     /translation="MSTSMLPAVIDALYTTMVAALPNAKVTDGFGVAADPTVDALMIG
                     VDDADNPGASATADNSQEMANAGLPRDRDETGVIQCVAFSLDGGKDPKTARDRAYAVF
                     GAVETSLRTDPRIGLTAPALLVAEIGSHRLLQDQFNQGAGAWVLFTVKYTARI"
     gene            1935..2162
                     /locus_tag="VIU37_05680"
     CDS             1935..2162
                     /locus_tag="VIU37_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013471.1"
                     /translation="MPTLLYKGPIDEVFLVGVGVLKNGDTFDVPDAVAGRAPAAATDE
                     APADLGEGLLAQSDNYELAPAKAPKAPKGGE"
     gene            2165..>2955
                     /locus_tag="VIU37_05685"
     CDS             2165..>2955
                     /locus_tag="VIU37_05685"
                     /inference="COORDINATES: protein motif:HMM:NF039819.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tube protein"
                     /protein_id="HEY6013472.1"
                     /translation="MGNLQDCSINIKPETTYKTGVTPDRAFRFTSETLDWNPTIVQGE
                     GLKVGTYMDLADERVVPSGQGGGDINFQVGSKGFGYLWQACLGTATSTVVLTSTYQQV
                     HTWAKQPSSLTIQKTSVEAGGTVDPVTFKGCSVTQWQLTFANQGLVTLQVSVDAGDYD
                     TVTGFAALSYPSTPNLFHFANWTNITGVVTPATTTALATASTGTALAGVRSLTITGNR
                     NPVVDRFNAIGTGRKDQPIGQQFDVTGSLEIEYQNTTQRDAYLAQT"
BASE COUNT          496 a         1117 c          926 g          416 t
ORIGIN      
        1 catcaacgcg ttccgcttcc tcctgggctg accccctcga ggtcgccggc ctaagcaacc
       61 ggcaagggcc cccctcggct tcctgtggcc gaggggggtc aagccacacc gctaccacgg
      121 gacaactcca cagaggaagg ccggaccctc atgggcaacc gccgcaagac ccccgcccaa
      181 cgcgcctcga ggaagctcga gccggcccac gcgcccgctg ccgggtcgat cgtcatcggc
      241 tacctgcatg ccggccagat ctccgcctac ttcacgcagt cgatcctggg gaccgtcctc
      301 tacgaccggg tccacggccg ccgggtcgcc gggatcctga acgagtggtc ctcggcgaac
      361 gtgtcgaacg cccgcaacaa gatcgtcacc cagttcctcg aggggtacgc cggggtcgcc
      421 gactggctgc tgttcatcga ctccgacatg gggtgggacc ccaacgcgca cgaacggctc
      481 ctcgccgtcg cagacccggc caaggcgccc atcgtcggtg gcctgtgctt cggaacctcc
      541 gaggacgccc tgttccccac catctactcg atgggcgccc tcaaggacga gcggcccatc
      601 acgatgcggc tcctcgacta ccccgaagac acgatgctcc gttgcgccgc gaccggcgcc
      661 gcgttcgtcc tgatccaccg gaccgtcctc gagcagatgc gtgaggccgc gttcaacccg
      721 gcgttcccct ggttccagga gaccgagctg tcgggccagc cgtgcagcga ggacatcacc
      781 ttctgcctcc gcgccggcct cctcggcatg ccggtccacg tccacaccgg cgtccacatc
      841 gggcaccaca agtcgcactt gctgacccgc gacaagttcc gcgcccagac cccgatcagt
      901 gaggaggagg ccacgtgacc ctggtcctgc tcgacatcac caccatgcgg cgggcgctcg
      961 gcatcacggc cgacacggtc gacaccgacc tcacccggta catgaccgag gccgaggaga
     1021 aggtcgccca gatcgtcggg cccctggcgc cgaccgcggt caccgaggtc atgcgcggcg
     1081 ccggcaccct ggtcctgacg accctgccgg tcatctcact gacctcggtc accggtgagt
     1141 tcgtcgggtc catctcgaac accctggtca ccgtcaacgc ctacggggtg gtgcggccgg
     1201 tccggttcca ggtcgtcctg ttcgacgact actacacggt cgtctaccag gccggatggg
     1261 tgacggcgac ctgccccacc gggttcacga ccgcagccga gctgatctgc aaggaccggt
     1321 gggctgcccg caacgggaac tcgacccgcc ggcagggcgg cgacgagacg gtcgacgtgc
     1381 ccggtgtggg ccgcatcccc gagctcgcct ggtcgatgct gcagccctac gcccacgggc
     1441 cctcggtggg ctgacgtgtc cacgtcgatg ctgccggccg tgatcgacgc cctctacacc
     1501 acgatggtcg cggcgctgcc gaacgcgaag gtcaccgacg ggttcggggt cgccgccgac
     1561 cccaccgtcg acgccctcat gatcggggtc gacgacgccg acaacccggg cgcctccgcg
     1621 accgccgaca actcccagga gatggcgaac gctggcctgc cccgcgaccg cgacgagacc
     1681 ggggtcatcc agtgtgtcgc cttctcgctc gacggcggaa aagacccgaa gaccgcccgc
     1741 gaccgggcct acgccgtgtt cggcgcagtc gagacgtcgc tacgcacaga cccgcggatc
     1801 gggctgaccg cccccgcgtt gctggtggcc gagatcggca gccaccggtt gctgcaagac
     1861 cagttcaacc agggagccgg cgcctgggtc ctgttcaccg tcaagtacac cgcccgcatc
     1921 tgaggagatc ccgcatgccc accctgctct acaagggccc gatcgacgag gtcttcctcg
     1981 tcggcgtcgg ggtcctcaag aacggcgaca cgttcgacgt gcccgacgcg gtcgctggcc
     2041 gcgccccggc cgcggcgacc gacgaggcgc cggccgatct cggtgaggga ctcctcgccc
     2101 agtccgacaa ctacgagctg gccccggcga aggcgccgaa ggccccgaag ggtggtgagt
     2161 gacgatggga aacctccagg actgctcgat caacatcaag ccggagacga cctacaagac
     2221 cggggtcacg cccgaccggg cgttccggtt cacgtcggag accctcgact ggaacccgac
     2281 catcgtgcag ggcgagggcc tcaaggtcgg cacctacatg gacctcgccg acgagcgggt
     2341 cgtcccgtcc ggtcagggcg gcggcgacat caacttccag gtcgggtcca agggtttcgg
     2401 ctacctgtgg caagcctgcc tcggtaccgc gacctcgacg gtggtgctca ccagcaccta
     2461 ccagcaggtc cacacgtggg cgaagcagcc gtcgtcgctg accatccaga agacgtcggt
     2521 cgaggccggc ggcaccgtcg acccggtcac gttcaagggc tgctcggtca cccagtggca
     2581 gctgacgttc gccaaccagg gcctcgtgac cctccaggtg agcgtggacg ccggcgacta
     2641 cgacacggtc accgggttcg cggccctgtc ctacccgtcg acccccaacc tgttccactt
     2701 cgccaactgg accaacatca ccggcgtcgt caccccggcg accaccacgg cgctggccac
     2761 cgcgtccacc ggcacggccc tggccggcgt ccggtcgctg accatcaccg gcaaccggaa
     2821 cccggtcgtc gaccggttca acgcgatcgg gaccggccgg aaggaccagc cgatcgggca
     2881 acagttcgac gtcaccgggt ccctcgagat cgagtaccag aacaccaccc agcgggacgc
     2941 ctacctggcg cagac
//
LOCUS       DATDDI010000394         3245 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_29409, whole genome shotgun sequence.
ACCESSION   DATDDI010000394 DATDDI010000000
VERSION     DATDDI010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3245
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29409"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1350)
                     /locus_tag="VIU37_05690"
     CDS             complement(<1..1350)
                     /locus_tag="VIU37_05690"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY6013473.1"
                     /translation="MAKRPSTPVEEKPTANAAGIRDIPLVALRETVIFPEMIVPLQVG
                     REKSVNALNAAVAEGSPIALVTQRQAEQEEIGDPSELYTVGTLAKIAQVVQLQDGTVR
                     AIVQGQGRLRVHGFASTDPYLRARIEEVPDQNPGGLEIQALMRTVQAQIEQYVASGAP
                     VPPEAAVAARNISEPGLLADMVAYSPDMTTEQRQEMLETIDVVARLKLVSNFLAHQVE
                     ILELKGRIQSEVKSEMDKTQREYILREQLKAIQRELGEDDPQQAEINELRDKVEAAGM
                     PEEIKTRAIKEIDRMSRIPSASPEVGVIRTYVDWLVGLPWNVTTDDRLDIKEAARILD
                     EDHYGLEKIKERILEYLAVRSLADTIRSPILLFVGPPGVGKTSLGKSIAKAMGRKFVR
                     MSLGGIHDEAEIRGHRRTYIGALPGRIIQSVKTAGTSNPVFMLDEVDKIGMDFRGDPS
                     "
     gene            complement(1359..1718)
                     /locus_tag="VIU37_05695"
     CDS             complement(1359..1718)
                     /locus_tag="VIU37_05695"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY6013474.1"
                     /translation="MASGRLERDPEQPVYVISVAAMLVSAHPRTLRIYEDEGLLCPAR
                     TPSNIRLYSENDIRRITWIRHLTRDRGVNLAGIRILFELEERLGARILEALYAEGIAD
                     AEAASAAASDPEAHPHT"
     gene            complement(1723..2262)
                     /locus_tag="VIU37_05700"
     CDS             complement(1723..2262)
                     /locus_tag="VIU37_05700"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY6013475.1"
                     /translation="MTIVRRASPLGELVSLRQAMDRLFEDSFARPRGWVTSAFEGYGL
                     PLDMTSGPDAVTIEASLPGYKPEDVEITVENGTLSIHAEGSSETREGEGESLVTEIRR
                     GSVSRTITLPTGLEPDKATATFEHGMLKLRIPKAEAVKPRQIRITPTTDGSSTHGSNG
                     SKRLADGETSAETAVPAGA"
     gene            complement(2483..3160)
                     /locus_tag="VIU37_05705"
     CDS             complement(2483..3160)
                     /locus_tag="VIU37_05705"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEY6013476.1"
                     /translation="MFVLVVGGGKVGYYLTKELIESGHEVVLMEKDRARASQIADEIG
                     SIVIPHDGCEGKYLGEAGCNRADVVAAVTGDDEDNLVICQMAKHHFDVPRTIARVNNP
                     KNEALFRHLGVDELISPTRMILGSIEQDIPVHELLHLAALGEGELEIIEAHLQSGSPA
                     IGHAPRDLAIPDGCSLFAVIRNGVATPLRPDTIMLEGDKVIAIGNTECQGLLHAQLIG
                     EALATDA"
BASE COUNT          435 a         1070 c         1154 g          586 t
ORIGIN      
        1 cgacgggtcg ccccggaagt ccatgccgat cttgtcgacc tcgtcgagca tgaacacggg
       61 gttgctcgtg ccggccgtct tgacgctctg gatgatccgg ccggggaggg cgccgatgta
      121 ggtgcgccgg tggccgcgga tctccgcctc gtcgtggatg ccgccgaggc tcatgcggac
      181 gaacttgcgg cccatcgcct tggcgatgct cttgcccagg ctcgtcttgc ccacgccggg
      241 agggcccacg aacagcagga ttggcgagcg gatcgtgtcc gcgaggctgc gcaccgcgag
      301 gtactcgagg atgcgctcct tgatcttctc gaggccgtag tggtcctcgt cgaggatccg
      361 ggcggcttcc ttgatgtcga gccggtcatc ggtggtgacg ttccacggca ggccgaccag
      421 ccagtccacg taggtgcgga tcacgccgac ctcgggcgag gcggacggga tccgactcat
      481 ccggtcgatc tccttgatcg cccgggtctt gatctcctcc ggcatgccgg cggcctcgac
      541 cttgtcgcgg agctcgttga tctcggcctg ctgcgggtcg tcctcgccga gctcgcgctg
      601 gatcgccttg agctgctcgc gcaggatgta ctcgcgctgg gtcttgtcca tctcggactt
      661 gacttccgac tggatccggc ccttcagctc gaggatctcg acctggtgcg cgaggaagtt
      721 ggagacgagc ttgaggcgcg ccacgacgtc gatcgtctcg agcatctcct ggcgctgctc
      781 ggtggtcatg tccgggctgt aggcgaccat gtcggccagg agcccgggct cgctgatgtt
      841 gcgggcggcg accgccgcct ccggcggcac cggcgcgccg ctcgcgacgt actgctcgat
      901 ctgggcctgg acggtccgca tcagcgcctg gatctcgagg ccgcccgggt tctggtcggg
      961 cacttcctcg atccgcgcgc gcaggtacgg gtcggtcgac gcgaagccgt ggacgcgcag
     1021 gcgcccctgg ccctggacga tcgcccgaac cgtgccgtcc tggagctgga cgacctgggc
     1081 gatcttggcc agggtgccca cggtgtagag ctcggaggga tcgccgatct cctcctgctc
     1141 ggcttgacgc tgggtgacga gcgcgatcgg cgacccctcg gcgaccgcgg cgttgagcgc
     1201 gttgacgctc ttctcgcggc cgacctggag cgggacgatc atctcgggga agatcaccgt
     1261 ctcccggagc gcgacgagcg ggatgtcccg gatgccggct gcgttggcgg tgggcttctc
     1321 ttcgaccggg gtggacggtc gcttggccat cagatctcct aggtgtgcgg gtgtgcctcg
     1381 ggatccgacg cggcggcgct ggcggcctcc gcgtcggcga ttccctcggc atagagagct
     1441 tcgaggatcc gagcgccgag gcgctcctcg agctcgaaca ggatgcgaat cccggcgagg
     1501 ttcacgcctc ggtcccgggt caggtgacgg atccaggtga tccgccggat gtcattctcg
     1561 ctatagagcc ggatgttgga tggcgtccgg gccgggcaga gcaggccctc gtcctcgtag
     1621 atccgcagcg ttcgcggatg cgcgctgacg agcatcgccg ccacgctgat gacgtagacc
     1681 ggctgctccg ggtcgcgttc cagccgtccg gacgccatcg gatcaggcgc ctgccggaac
     1741 ggccgtctcg gccgaggtct cgccgtcggc gaggcgcttc gagccattcg aaccatgggt
     1801 ggacgatccg tcggtcgtcg gagtgatccg gatctgccgg ggcttcacgg cctccgcctt
     1861 cgggatccgg agcttcagca tgccgtgctc gaaggttgcg gtcgccttgt ccggctcgag
     1921 cccggtcggc agcgtgatgg ttcgactgac ggacccgcgc cggatctcgg tgacgaggga
     1981 ctcgccctcg ccctcccggg tctccgagct gccttccgcg tggatgctga gggtcccgtt
     2041 ctcgacggtg atctcgacgt cctcgggctt gtagccgggc agcgacgcct cgatcgtcac
     2101 ggcatccggc ccgctggtca tgtcgagcgg caggccgtag ccctcgaatg cgctggtgac
     2161 ccagccacgc ggacgcgcga agctgtcttc aaaaagccgg tccatcgcct gccgaagcga
     2221 gacgagctcg cccaggggcg aggcgcggcg cacgatcgtc atatcgcaca cctcctggtg
     2281 atggatgtcc cggggcctcc cttgcgggcc ccgtatcaac acgacggatg ctagaaccct
     2341 gacaatggcg ttgtcaagag tcctggcacc aatgttccat tgagaaatgg caacccgacg
     2401 tacccgggga cggcgggcga cggagatctc gcgatgacgg tggcgggcgg ggccggctgg
     2461 atgccggtcc gtccgtcccg tatcaggcgt cggtcgcgag tgcctcgccg atgagctggg
     2521 cgtgcagcag cccctggcat tcggtgttgc cgatggcgat gaccttgtcg ccctcgagca
     2581 tgatcgtgtc cgggcggagc ggcgtggcga cgccgttgcg gatgaccgcg aacaacgagc
     2641 aaccatcggg gatcgccagg tcgcggggcg cgtggccgat ggccggcgag ccggactgca
     2701 ggtgtgcctc gatgatctcc agctcgccct cgccgagcgc cgccaggtgg agcagctcgt
     2761 ggaccgggat gtcctgctcg atcgagccca ggatcatccg ggtggggctg atgagctcgt
     2821 ccacgcccag atggcggaag agcgcctcgt tcttgggatt gttgacgcgg gcgatcgtgc
     2881 gcgggacgtc gaagtggtgc ttggccatct ggcagatgac gaggttgtcc tcgtcgtcgc
     2941 cggtcaccgc cgccacgacg tcggcgcggt tgcagcccgc ctcgccgagg tacttcccct
     3001 cgcagccgtc gtgggggatg acgatggaac cgatctcgtc ggcgatctgg ctggcccgcg
     3061 cccggtcctt ctccatgagc acgacctcgt gcccgctctc gatgagctcc ttggtcaggt
     3121 agtagccgac cttcccgccg ccgacgacca gcacgaacat ggctcaggcc tccggggtgc
     3181 tgtcagcgcc gggcaccgca tgggtgtggg cgtgctcggg gacgtagatg cccggccgcc
     3241 cgcgg
//
LOCUS       DATDDI010000395         1666 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_279126, whole genome shotgun sequence.
ACCESSION   DATDDI010000395 DATDDI010000000
VERSION     DATDDI010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279126"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..393)
                     /gene="rpsE"
                     /locus_tag="VIU37_05710"
     CDS             complement(<1..393)
                     /gene="rpsE"
                     /locus_tag="VIU37_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003328273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEY6013477.1"
                     /translation="MARIDPNKLALEERVVQINRVAKVVKGGRRFSFSAVIVVGDGNG
                     HVGVGLGKAGEVPEAIRKGVEDAKKHLVRIPTVGTTIPHEVRTVYAASRVMLKPASQW
                     TGVIAGGSVRAVVEAAGIHDILTKVTGST"
     gene            complement(406..768)
                     /gene="rplR"
                     /locus_tag="VIU37_05715"
     CDS             complement(406..768)
                     /gene="rplR"
                     /locus_tag="VIU37_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015302640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEY6013478.1"
                     /translation="MTTATSRGAARQKRHERIRLTVEGDPSRPRLAVFRSLKHIYAQV
                     IDDTAGRTLAAASDLDPDLRGSDGTKSDDAVRVGRLIAQRARAAGVERVVFDRAGFRY
                     HGRIKSLADAAREAGLEF"
     gene            complement(797..1348)
                     /gene="rplF"
                     /locus_tag="VIU37_05720"
     CDS             complement(797..1348)
                     /gene="rplF"
                     /locus_tag="VIU37_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008372550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEY6013479.1"
                     /translation="MSRIGRLPIPVPAGVDVDIDGRHITVTGPKGSLERDLHPEMGVS
                     REGDDIVVTRPSETKTHKQLHGLTRTLVNNMVVGVTSGYRKGLEITGVGYRAVLVGKK
                     LQLSLGYSHPVEIEPPTGISFELENPTKLAVVGIDKELVGQVAAKVRSTRKPEPYKGK
                     GVRYAGEQIRRKAGKAGKIGGKK"
     gene            complement(1353..>1666)
                     /gene="rpsH"
                     /locus_tag="VIU37_05725"
     CDS             complement(1353..>1666)
                     /gene="rpsH"
                     /locus_tag="VIU37_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009145399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEY6013480.1"
                     /translation="SRTKREIARILKAEGFIAEVAEEQDGTEHVLRLTLRYVDGKVPV
                     VSGLKRISKPGLRVYARKTDIPRVLGGLGIVIVSTSQGIMTGAEARKAQLGGEVLAYV
                     W"
BASE COUNT          210 a          570 c          593 g          293 t
ORIGIN      
        1 cgtcgagccg gtgaccttgg tcaggatgtc gtggatcccg gccgcctcga cgacggcccg
       61 gaccgacccg ccggcgatga cgccggtcca ttggctggcg ggcttgagca tgacccggct
      121 ggccgcgtag accgtccgga cctcgtgcgg gatcgtcgtc ccgaccgtcg ggatacggac
      181 gaggtgcttc ttcgcgtcct cgacgccctt gcggatcgcc tccgggacct cgccggcctt
      241 gcccagcccg acgcccacgt ggccgttgcc gtcaccgacg acgatgaccg cgctgaagct
      301 gaaccgccgg ccgcccttga cgaccttggc gacgcggttg atctggacga cgcgctcctc
      361 gagcgcgagc ttgttggggt cgatgcgagc cacggtcagc ctcctctaga actcgaggcc
      421 ggcttcgcgc gcggcgtcgg cgagcgactt gatgcggccg tggtatcgga atccggcccg
      481 atcgaacacg acccgctcga cgcccgccgc gcgagcgcgc tgggcgatga gccgaccgac
      541 ccggacggca tcgtcggact tcgtgccgtc gctgccgcgc aggtcggggt ccaggtccga
      601 cgcggccgcc agcgtccggc cggcggtgtc gtcgatgacc tgggcgtaga tgtgcttgag
      661 gctccggaag acggccagcc gcggccgcga cggatccccc tcgacggtga ggcggatccg
      721 ctcgtggcgc ttctggcgcg ccgcgccgcg gctcgttgcg gtggtcatcg tgcgttcgtc
      781 ctcgattcca acggggttac ttcttgccgc cgatcttgcc ggccttgccg gccttgcggc
      841 ggatctgctc gccggcgtag cggacaccct tgcccttgta cggctcgggc ttgcgggtcg
      901 agcgaacctt ggcggccacc tggccgacga gctccttgtc gatgccgacg acggcgagct
      961 tcgtggggtt ctccagctcg aagctgatgc cggtcggcgg ctcgatctcg acgggatggc
     1021 tgtagccgag gctgagctgg agcttcttgc cgaccagcac ggcgcgatag ccgacgccgg
     1081 tgatctcgag gcccttgcga tagcccgagg tcacgccgac gaccatgttg ttcacgagcg
     1141 tccgggtcag gccatggagc tgcttgtggg tcttcgtctc gctcggccgg gtcaccacga
     1201 tgtcgtcgcc ctcgcggctg acgcccatct cgggatggag gtcgcgctcg aggctgccct
     1261 tgggcccggt caccgtgatg tggcgaccgt cgatgtcgac gtcgacgccg gcgggaacag
     1321 ggatcggaag tcggccgatt cgggacatcg ggctaccaga cgtaggccag gacttcgccg
     1381 ccgagctggg ccttgcgggc ctcggcgccg gtcatgatcc cctggctggt gctgacgatg
     1441 acgatgccga gtccgcccag gactcgcggg atgtcggtct tgcgggcgta cacccggagc
     1501 ccgggcttgc tgatccgctt gagaccgctg acgaccggca ccttgccgtc gacgtagcgc
     1561 agggtcagcc gcaggacgtg ctccgtgccg tcctgctcct cggcaacctc ggcgatgaag
     1621 ccttcggcct tgaggatgcg ggcgatctcg cgcttggtcc gggaag
//
LOCUS       DATDDI010000396         1966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_424903, whole genome shotgun sequence.
ACCESSION   DATDDI010000396 DATDDI010000000
VERSION     DATDDI010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424903"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1571
                     /locus_tag="VIU37_05730"
     CDS             <1..1571
                     /locus_tag="VIU37_05730"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY6013481.1"
                     /translation="GHNGLVTAAYLGRAGLRTVVLERRETLGGATATTELAPGARVPA
                     LAHTVGRLRPSVVRDLDLKRHGLSLIGPDVRVFAPGPDGEAIVLRADPGATAAGLRAR
                     SAHDADAYLAFDRLVRALAGFLGELAARTPPDIESPGLGDAISGLQLGRTFRGLGRKD
                     ARAITRVLPMAVADFVAESFETDALQAAIAWRGVHYTAMGPWSAGTTAVLLADSAGND
                     GGAAGQTVFARGGPGVLTSALEAAGRAWGVDYRTGADVVAITSRDGRATGVALAGGEE
                     LTARVVVAGIDPKRALTRLADPVAVGPSLLWRAGNIRTPGTVTKINLALSGTPRFLAA
                     GDDASLIRGRILVAPGIDPLERAHDAAKYGRWSEPPVMEATIPSLVDPSLVEGAPAGT
                     QVMSVIAQSTPYALRDGTWEERREAFGDLVVSTLDAYAPGLAAMVTARQVLTPVDLER
                     EYGLSGGHPMHGEHGLDQWFLWRPLLGHARYRLALDGLYLAGAGAHPGGGVSGQNGQN
                     AAREIVADWKKRRG"
     gene            complement(1590..>1966)
                     /locus_tag="VIU37_05735"
     CDS             complement(1590..>1966)
                     /locus_tag="VIU37_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013482.1"
                     /translation="DAEDDFDVGLIEGHAELLDRPTSEVLPPAHLAKYASQLDAIGLT
                     ADEYAATYSQVVRIILDRPLGWHGRRVPRSARLAGAPSRSIDESPRERPTLREWLGEP
                     LARGIRAVADGVRVAVPRPAAS"
BASE COUNT          232 a          743 c          741 g          250 t
ORIGIN      
        1 gcggccacaa cggcctcgtc accgccgcct acctcgggcg ggccggactc cggaccgtcg
       61 tgctcgagcg acgcgagacc ctcggcggcg cgacggcgac gaccgagctc gcgcccggcg
      121 cgcgcgtgcc ggccctcgcc cacaccgtcg gccggctgcg gccctccgtc gtccgcgacc
      181 tcgacctcaa gcgccacggc ctgtcgctga tcggtccgga cgtgcgggtc ttcgcgcccg
      241 gcccggacgg cgaggcgatc gtgctgcggg cggacccggg tgcgaccgca gcgggccttc
      301 gcgcacggtc ggcccacgat gccgacgcgt acctcgcgtt cgaccggctc gttcgcgcgc
      361 tcgcgggctt cctcggcgag cttgccgcgc ggaccccgcc cgacatcgaa tcgcccggac
      421 tgggcgacgc catcagcggg ctccagctcg ggcggacctt ccgggggctc ggtcgcaagg
      481 atgccagggc catcacccgg gtcctgccga tggccgtcgc cgacttcgtc gcggaatcgt
      541 tcgagaccga cgcgctccag gccgcgatcg cctggcgcgg cgtccactac acggcgatgg
      601 gcccctggtc ggccggcacg acggccgtcc tgctggccga ctcggcgggc aacgacggtg
      661 gcgccgccgg ccagaccgtg ttcgctcgcg gcggcccggg cgtgctcacg tccgccctcg
      721 aggccgccgg ccgcgcgtgg ggcgtggact accggaccgg cgccgatgtc gtcgccatca
      781 cctcgcgcga cggacgtgcc accggcgtgg ccctggccgg cggcgaggag ctgacggccc
      841 gcgtcgtcgt ggccggcatc gatccgaagc gggcgctgac ccgcctcgcc gacccggtgg
      901 cggtcggccc gagcctgctc tggcgggccg gcaacatccg gacgccgggc accgtcacca
      961 agatcaacct ggcgctgtcg gggacacccc ggttcctggc ggcgggcgat gacgcctcgc
     1021 tgatccgtgg ccggatcctc gtcgcgccgg ggatcgaccc gctggagcgg gcccacgatg
     1081 ccgccaagta cggccgctgg tccgagccgc cggtgatgga ggcgacgatc ccgtcactgg
     1141 tcgacccctc gctggtcgag ggtgccccgg ccggcaccca ggtgatgagc gtgatcgccc
     1201 agtccacgcc gtacgcgctc cgcgacggca cgtgggagga gcgtcgcgag gcgttcgggg
     1261 atctcgtcgt gtccaccctc gatgcgtacg ccccgggcct cgccgcgatg gtcacggccc
     1321 ggcaggtgct gacaccggtc gatctcgagc gcgagtacgg cctgtcgggg gggcatccga
     1381 tgcatggcga gcacggcctg gaccagtggt tcctgtggcg gccgctgctc ggccacgcgc
     1441 gataccggct ggcgctcgac gggctctacc tggccggcgc cggcgcgcat cccgggggtg
     1501 gcgtcagcgg ccagaacggg cagaacgcgg cgcgcgagat cgtggccgac tggaagaagc
     1561 gccggggctg acccggggcg gcaagccgcc tacgacgcag cgggcctggg cacggcgacg
     1621 cgaacgccgt ccgcgacggc ccggatcccg cgggccagcg gctcgccgag ccactcccgg
     1681 agggtcggcc gctcgcgagg cgactcgtcg atcgagcgtg acggggcgcc ggccaggcgg
     1741 gcgctccgtg ggacacggcg cccgtgccag ccgagcggcc tgtcgaggat gatccggacg
     1801 acctgcgagt aggtggccgc gtactcgtcg gccgtcagcc cgatggcgtc gagctggctc
     1861 gcgtacttgg ccagatgcgc cggcggcagg acctccgagg tcggccggtc gagcagctcg
     1921 gcgtgtccct cgatcagccc cacgtcgaag tcgtcctcgg cgtcgc
//
LOCUS       DATDDI010000397         7324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_612107, whole genome shotgun sequence.
ACCESSION   DATDDI010000397 DATDDI010000000
VERSION     DATDDI010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 7324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7324
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612107"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VIU37_05740"
     CDS             complement(<1..213)
                     /locus_tag="VIU37_05740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013483.1"
                     /translation="MTLFINQATPYLRVYNPATEEFAQFQGGKLQLDEDDPDYGVVMA
                     EALRNPAIIILADGVQCPECGEPFTGK"
     gene            complement(226..693)
                     /locus_tag="VIU37_05745"
     CDS             complement(226..693)
                     /locus_tag="VIU37_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013484.1"
                     /translation="MPREVFPAGIRRTIFHHSSIPTAASTVSADFNANTLQTIAGGAG
                     GFIPGVKARITKLRFRVGDADFAGAGGTLTFELRRDSATGTAICSLTIPLASALRGTA
                     LEANVTNTNAAISAADITDSTKLFLVRLATGTVFTTGTGVFEVEAWERPQARQ"
     gene            complement(781..1929)
                     /locus_tag="VIU37_05750"
     CDS             complement(781..1929)
                     /locus_tag="VIU37_05750"
                     /inference="COORDINATES: protein motif:HMM:NF036552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5309 family protein"
                     /protein_id="HEY6013485.1"
                     /translation="MATITGTRLTLSDTVGLAVDMSPTIQLIDPFDVGLLSYFGLSSL
                     DKACTETEHKWMEDTLRPLTSTITDNPLGAGAVAINVAAGTGANFRTGDVVKIDDELI
                     RITADPAADTLTTIAAPNGRGWGGSTAAAHVLNSVIEIVGVAILEGTATPGIARTTVK
                     TSVSNFTQIFEDVVQVSSTLEAVEQWAPGSEYARQLSKTMKTLMILLDKTFIYGKPTA
                     GSATVPRSLGGIRHFITTNVTAASGAQISEKLVLDSLNLSYDNGGRVRVLAMRLKQKQ
                     GVNKFLDPNRRTGMDDRKAGAVVDSYLWDQGVVDILVDRWLPADELELLDTEHIGFGP
                     LADQSLGHEILPKQSRLVQRGQITGEYTAEVKSEKAHARITGLSTTIL"
     gene            complement(1953..2678)
                     /locus_tag="VIU37_05755"
     CDS             complement(1953..2678)
                     /locus_tag="VIU37_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013486.1"
                     /translation="MPANNLTDSNDLAGTPGEGEDDDAQSSTPPSLTLPPDAVRNSPE
                     YKALQRQLRAEARARGRAEAEAAAVRTQSAEALQAAEAQRQQAIAEQLRDVLGEDGID
                     AFNEMAELSETDPVAAARKFRELASQFAQSGGDSAALAAAVAGDSTNGGTPPVTGQQQ
                     TPPPVPGQTLSGDAPLGQATTGTDWDAVIADSTDRYAKIVERNQDPVTRARVTDRDRG
                     EGFMAWLSAAYVKGMRTVGRLPR"
     gene            complement(2742..>7324)
                     /locus_tag="VIU37_05760"
     CDS             complement(2742..>7324)
                     /locus_tag="VIU37_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013487.1"
                     /translation="GYKPVDEAGNFIASKETRTGQHVQTSWLDYPLTNHDLIELGNRG
                     WLGNKMDAVTRGFRTWRILEYQRGSLFRSLSSKTSFSATQIEAFHAGVLNISRKHALS
                     PQAVGRAPGWAPGLSAIGEEVNQLARTIFGPGPHIDANGNVINWRREIGSAYRQAYRL
                     NLTAGLTSHLKASLGPVGEAITYGSEFMYVMWRFGLSPLFKGGELWESAQLNLMRRVA
                     PNEDPAITAMYLRTGASGDPAAVAAEITGADQMIQGLARTPDMQNAADTLLGGGPHAA
                     AGARRSWTGDERAAQGLSFYALGLKENHLQQLDRQAAEARATAFRDRVLGGEAGRNTP
                     LDEINQRILDITDEAGNVLPGNEADLAILLRQAELETLPPDIRAALQAYPGGAPTAHQ
                     LAVAADLHATADAYRQLGTTQYARREPIPRDQTPGFSANGYASSEELHAYSRSRSALI
                     EDAADPALLRHVRDQATVDGHQITIELADSTSGYTASKGSNAPVGIDAGIEVTGFGAT
                     PDDALLDLSRRLEAKGFGPAAPSHQPLTDDERLGMWQHAVDKGWMPDDEALRVYRRLD
                     ELVNDITRERDKLRAWKAGKPAAGTGVSKIDITDPITGQPVMRDVEFGTEREFDTALR
                     SLRARRAYAKKNLTLPSTEDMALRLDAYAESVAAPKPILRSERVGPQDALPEGYTTDP
                     AEVFIAGQTGGRAPWIDKENTLPEDRGLYHATTATTAVLDTGLLSRLELIRRSAPDEA
                     VQALSKAYHADNLAPADIRVWLTNGKTVSLTHESLDQIEQARMLEDSYSGDLIPLSDV
                     ATIKNGLTGETIYTRPQGLGARAPEGLSATRPDKFVSTTTNWNHAQTIAERLKLVSSV
                     ANGRAGAEDITAHFERFYVDLLGDDEAGLLWMANSLGVDTKATLDETYNAIEQHIRDR
                     IAGSRAPNEEGFRIVQELDVGLHRARYDSGIDLQPGEFDGSVIFAGSFEGAKNINPDE
                     VGVVQVGVRTHAHPPLAEADVRAALNAVQQRIDDSVFHDTVRLHKADGTDSSFVRWST
                     VYDPASGGYVPYVKPDGTTEAQAFKEWMDEELALAAAEPDAAITGILEGDTLIAGGTR
                     PGWDQQARVGPDQNEIQFPSSDTYVIDPRTHAEPIADNEDDLLRQLRQTIDDQGNVIP
                     GYERRQQEIATRLDHMRQEALNPDPVSSLEDIPFTAEGISVNLESAMKASWSRRAKGK
                     LRGWGERFWDPIPTKNDALTRQVIQMQREEFPRVVAGTGVEQVFREVAGPENQWADWL
                     VQDRALLDDWLKAKTSGTPEQEAAALDALTAHAGGDELRSAVDDLYASDEWAVISSLW
                     AINLRGNGEEAFGTHFFDQYRSPLLRSINHPVLGVYPASWAIKTAREWAKFLFDNRAF
                     GTELRLGMQPAVAISEVARSQAVTFAQDPDNNGQTWDQFMRDGPLGSTLFVFNLLMPG
                     DWSSLPFPLSRTIREVLRGNLDPGAILASNITYSGVTRDLRLGAETWGEWVDLALGNK
                     ADGAWTDAPPSVGGMPMKKPKKPPKWVDQPNR"
BASE COUNT          917 a         2543 c         2613 g         1251 t
ORIGIN      
        1 cttgcccgtg aacggctcgc cgcactcggg gcactgcacg ccgtccgcga ggatgatgat
       61 cgccgggttg cgcagcgcct cggccatgac gaccccgtag tcggggtcgt cctcgtccag
      121 ctggagcttg cccccctgga actgcgcgaa ctcctccgtg gccgggttgt agacccggag
      181 gtacggggtg gcctggttga tgaacagggt catggcggga tcctcctact gccgggcctg
      241 cggccgctcc cacgcctcga cctcgaacac gccggtgccc gtggtgaaca cggtcccggt
      301 ggcgaggcgg acgaggaaca gcttggtgct gtccgtgatg tcggcagcgg agatcgccgc
      361 gttcgtgttg gtgacgttgg cctcgagcgc ggtgccgcga agggccgacg ccagcgggat
      421 cgtcagcgag cagatcgcgg tgccggtcgc ggagtcgcgc cggagctcga aggtgagcgt
      481 gccgcccgcg ccggcgaagt cggcgtcccc gacccggaag cggagcttgg tgatccgcgc
      541 cttgacgccc gggatgaagc ccccggcgcc accggcgatc gtctggagcg tgttcgcgtt
      601 gaagtcggcg ctgaccgtcg acgcggcggt ggggatcgag ctgtggtgga agatcgtccg
      661 ccggatcccg gcggggaaga cttcgcgcgg catgtcgtac ctctctacgg ttcgtcgggc
      721 ccgggcaacc cccttcgtcg cccgggcccg accccctcta tgctcctcgt cggcctcggc
      781 ctagaggatc gtggtggaca ggccggtgat gcgcgcgtgc gccttctccg acttgacctc
      841 ggcggtgtac tcgccggtga tctggccccg ctggacgagg cggctctgct tcggcaggat
      901 ctcgtggccc agggactggt ccgcgagcgg cccgaagccg atgtgctccg tgtccagcag
      961 ctccagctcg tcggccggga gccagcgatc gacgaggatg tcgaccacgc cctggtccca
     1021 caggtaggag tcgaccacgg cgccggcctt gcggtcgtcc atgcccgtcc gccggttggg
     1081 atcgaggaac ttgttgacgc cctgcttctg cttgagccgc atggcgagga cccggacgcg
     1141 cccgccgttg tcgtacgaca ggttgagcga gtccaggacc agcttctcgc tgatctgggc
     1201 gcccgacgcc gccgtgacgt tggtggtgat gaagtgccgg atcccgccca gcgagcgcgg
     1261 gacggtggcg gagcccgcgg tgggcttgcc gtagatgaac gtcttgtcga gcaggatcat
     1321 gagggtcttc atggtcttgc tcagctgccg ggcgtactcg gagcccggcg cccactgctc
     1381 gacggcctcg agcgtcgagg acacctgcac gacgtcctcg aagatctgcg tgaagttgga
     1441 cacgctcgtc ttgacggtcg tgcgcgcgat gcccggggtg gccgtgccct cgaggatcgc
     1501 cacgccgacg atctcgatga cgctgttgag gacgtgggcc gcggcggtcg agccgcccca
     1561 gccgcggccg ttgggggccg cgatcgtggt cagcgtgtcg gccgccggat ccgcggtgat
     1621 ccggatcagc tcgtcgtcga tcttcacgac gtcgccggtc cggaagttgg cgccggtgcc
     1681 ggcggcgacg ttgatcgcca cggcgcccgc gcccagcggg ttgtcggtga tcgtggaggt
     1741 cagcgggcgg agggtgtcct ccatccactt gtgctccgtc tcggtgcatg ccttgtccag
     1801 gctcgacagg ccgaagtagg acaggagccc cacgtcgaac gggtcgatga gctggatggt
     1861 cgggctcatg tcgaccgcga gccccacggt gtcggacagc gtgagccgcg tcccggtgat
     1921 cgttgccatt tcagcccctc tgtgaggtca ggtcagcgtg gaagacgacc gacggtccgc
     1981 atgcccttca cgtaggccgc cgacagccac gccatgaacc cctcgccgcg atcccggtcg
     2041 gtgacacggg cgcgggtgac gggatcctgg ttgcgctcga cgatcttcgc gtagcggtct
     2101 gtggagtccg cgatgacggc atcccaatcg gtgccggtgg tcgcctgacc cagcggcgca
     2161 tctccggaga gcgtctgccc gggaaccggc ggcggcgtct gctgctgacc agtcacgggc
     2221 ggggtgcctc cattggtgct gtcaccggcc acggccgctg cgagtgctgc gctgtcgccg
     2281 ccgctctgcg cgaactggct tgcgagctct cggaacttcc gggcggctgc cacggggtcc
     2341 gtctcggaca gttccgccat ctcgttgaag gcgtcgatgc cgtcttcacc aagaacgtca
     2401 cggagctgtt ccgcgatcgc ctgctgacgc tgggcctctg cggcctggag ggcttctgcg
     2461 gactgcgttc ggacagcggc ggcttccgcc tctgcccgtc cacgggcccg cgcctccgcg
     2521 cggagctggc gctggagtgc cttgtattcc ggcgagttcc ggacggcatc gggcgggagg
     2581 gtaaggctgg ggggcgtgga cgactgtgcg tcgtcgtctt ccccctcgcc cggggtcccg
     2641 gcgaggtcgt tgctgtccgt gaggttgttc gcgggcatct aggccctcct tgcgactgga
     2701 gacgttacag ccctgccgtg tctccttgca cggcgatcac gtcagcggtt cggctggtcg
     2761 acccacttcg gcggcttctt gggcttcttc atgggcatgc cgccaacgga cggcggggca
     2821 tcggtccagg caccatcggc cttgttgccc agcgcgaggt ccacccactc gccccacgtc
     2881 tccgccccca gccgcaggtc gcgggtgacg ccggagtacg tgatgttgga cgcgaggatc
     2941 gcccccgggt cgaggttgcc gcgcagcacc tcgcggatcg tccgcgacag cgggaacggc
     3001 agcgacgacc agtcgccggg cattagcagg ttgaacacga acagggtcga tcccagcggc
     3061 ccgtcgcgca tgaactggtc ccacgtctgg ccgttgttgt ccgggtcctg ggcgaaggtg
     3121 acggcctgcg accgggcgac ctcgctgatc gccacggcgg gctgcatgcc cagccgcagc
     3181 tccgtcccga aggcccggtt gtcgaacagg aacttggccc actcgcgggc ggtcttgatc
     3241 gcccacgacg ccgggtagac gcccaggacc gggtggttga tcgagcgcag gagcggcgat
     3301 cggtactggt cgaagaagtg ggtgccgaac gcctcctcgc cgttgccgcg gaggttgatg
     3361 gcccacagcg acgagatgac cgcccactcg tcggacgcgt acaggtcgtc caccgcggac
     3421 cgcagctcgt cgccgccggc atgggccgtc agggcgtcca gcgccgcggc ctcctgctct
     3481 ggcgtccccg acgtcttcgc cttgagccag tcgtccagca gcgcccggtc ctgcaccagc
     3541 cagtcggccc actggttctc ggggcccgcg acctcgcgga acacctgctc cacgccggtc
     3601 ccggcaacga cgcgcgggaa ctcctcgcgc tgcatctgga tcacctgccg ggtgagcgcg
     3661 tcgttcttcg tcgggatcgg gtcccagaac cgctcgcccc agccccgcag cttgcccttg
     3721 gcgcggcggc tccacgacgc cttcatcgcg ctctcgaggt tgacgctgat gccctcggcg
     3781 gtgaacggga tgtcctccag cgacgacacc gggtccgggt tcagcgcctc ctgccgcatg
     3841 tggtcgagcc gggtggcgat ctcctgctgg cggcgctcgt agcccgggat cacgttgccc
     3901 tggtcgtcga tcgtctggcg cagctggcgg agcaggtcgt cctcgttgtc ggcgatcggc
     3961 tcggcgtggg tccgggggtc gatgacgtac gtgtccgacg acgggaactg gatctcgttc
     4021 tggtccgggc ccacgcgcgc ctgctggtcc cagccgggcc gggtgccgcc cgcgatcagc
     4081 gtgtcgcctt cgaggatccc ggtgatcgcc gcgtcgggct cggccgcggc cagcgccagc
     4141 tcctcgtcca tccactcctt gaacgcctgg gcctcggtgg tgccgtccgg cttgacgtac
     4201 gggacgtagc cgcccgacgc cgggtcgtag accgtcgacc agcggacgaa cgacgagtcc
     4261 gtcccgtccg ccttgtggag gcggaccgtg tcgtggaaca cggagtcgtc gatccgctgc
     4321 tgcacggcgt tgagcgccgc ccggacgtcg gcctcggcca gcggcgggtg cgcgtgggtc
     4381 cggacgccca cctgcacgac gcccacctcg tcggggttga tgttcttcgc gccctcgaac
     4441 gacccggcga agatgaccga cccgtcgaac tcgcccggct ggaggtcgat gccgctgtcg
     4501 tagcgcgccc ggtggagccc gacgtcgagc tcctgcacga tccggaaccc ttcctcgttg
     4561 ggcgcgcgcg acccggcgat ccggtcccgg atgtgctgct cgatcgcgtt gtacgtctcg
     4621 tccagcgttg ccttcgtgtc gacgcccagc gagttcgcca tccacagcag cccggcctcg
     4681 tcgtcgccca gcaggtcgac gtagaaccgc tcgaagtggg cggtgatgtc ctccgcgccg
     4741 gccctgccgt tggcgaccga cgacacgagc ttgagccgtt ccgcgatggt ctgggcgtgg
     4801 ttccagttgg tggtcgtgga cacgaacttg tcgggccggg tggccgacag gccctcgggc
     4861 gcgcgggcgc ccagcccctg cggccgggtg tagatcgtct cgccggtgag cccgttcttg
     4921 atcgtggcga cgtcggacag cgggatcagg tccccgctgt acgagtcctc cagcatccgg
     4981 gcctgctcga tctgatccag cgactcgtga gtgaggctga ccgtcttgcc gttggtcagc
     5041 cagacccgaa tgtcggcggg ggccaggttg tcggcgtggt acgccttgga cagcgcctgc
     5101 accgcctcgt ccggggccga ccggcggatc agctccagcc gcgacaggag cccggtgtcg
     5161 aggaccgccg tggtcgcggt ggtcgcgtgg tacagcccgc ggtcctcggg gagcgtgttc
     5221 tccttgtcga tccacggcgc gcgcccgccg gtctggcccg cgatgaagac ctcggccgga
     5281 tccgtcgtgt agccctcggg cagcgcgtcc tgcgggccca cgcgctcgct gcgcaggatc
     5341 ggcttgggcg cggcgaccga ctcggcgtac gcgtccagcc ggagcgccat gtcctcggtc
     5401 gacgggaggg tcaggttctt cttcgcgtac gcccggcgcg cccgcagcga ccggagcgcg
     5461 gtgtcgaact cccgctcggt gccgaactcg acgtcgcgca tcaccggctg cccggtgatc
     5521 gggtcggtga tgtcgatctt gctgacgccg gtcccggccg cgggcttgcc ggccttccac
     5581 gcccgcagct tgtcacgctc gcgggtgatg tcgttcacca gctcgtccag gcggcgatag
     5641 acgcgcagcg cctcgtcgtc gggcatccag cccttgtcga ccgcgtgctg ccacatgccc
     5701 agccgctcgt cgtcggtgag cggctggtgg ctgggcgccg ccgggccgaa gcccttggcc
     5761 tccagcctgc gcgacaggtc gagcagggca tcgtcggggg tcgcaccgaa ccccgtgacc
     5821 tctatgcccg cgtcgatacc gacgggcgcg ttcgacccct tcgacgcggt gtagcccgac
     5881 gtgctgtccg caagctcgat ggtgatctgg tggccgtcaa ccgtcgcctg gtcccggacg
     5941 tgccggagaa gggctggatc ggcggcatcc tcgatgaggg ccgaccgact gcgagagtac
     6001 gcatgaagct cctcggacga ggcgtacccg ttcgcggaga aaccgggcgt ctggtcacgg
     6061 gggatgggct cccgtcgtgc atattgcgtc gttccaagct gccgataggc gtcggcggtc
     6121 gcgtgcagat ccgcggcgac cgccagctgg tgggccgtgg gcgcgccgcc cgggtacgcc
     6181 tggagcgcgg cccggatgtc gggcggcagc gtctcgagct ctgcctgccg gagcaggatg
     6241 gcaaggtccg cctcgttgcc ggggaggacg ttgcccgcct cgtcggtgat gtcgaggatc
     6301 cgctggttga tctcgtcgag cggcgtgttg cgcccggcct cgccgcccag cacccggtcc
     6361 cggaacgcgg tcgcccgcgc ctccgcggcc tgccggtcca gctgctggag atggttctcc
     6421 ttgagcccca gcgcgtagaa cgacaggccc tgcgccgccc gctcgtcgcc ggtccacgac
     6481 cgccgcgcgc ccgccgccgc gtggggcccg ccgcccagca gcgtgtcggc cgcgttctgc
     6541 atgtccgggg tgcgcgcgag gccctggatc atctggtcgg cgccggtgat ctccgcggcg
     6601 accgcggccg gatccccgct cgcgccggtg cgcaggtaca tcgcggtgat cgccgggtcc
     6661 tcgttcggcg cgacccggcg catgaggttc agctgggccg actcccacag ttcgccgccc
     6721 ttgaacagcg gcgacagccc gaagcgccac atcacgtaca tgaactcgga cccgtacgtg
     6781 atcgcctcgc ccaccgggcc cagcgacgcc ttgaggtggg acgtcaggcc ggcggtcagg
     6841 ttgagccggt acgcctggcg gtaggcgctg ccgatctcgc gccgccagtt gatgacgttg
     6901 ccgttggcgt cgatgtgcgg ccccgggccg aagatcgtcc gggccagctg gttgacctcc
     6961 tcaccgatcg cggacaggcc gggggcccag ccgggcgcgc gcccgactgc ctgcggcgac
     7021 agcgcgtgct tgcggctgat gttcagcacg cccgcgtgga acgcctcgat ctgcgtcgcg
     7081 ctgaacgacg tcttggacga cagcgaccgg aacagcgagc cccgctggta ctccaggatc
     7141 cgccacgtcc ggaagccccg ggtcacggcg tccatcttgt tgcccagcca gccgcggttg
     7201 cccagctcga tcaggtcgtg gttggtgagc gggtagtcga gccacgacgt ctggacgtgc
     7261 tggcccgtcc gcgtctcctt cgacgcgatg aagttcccgg cctcgtcgac gggcttgtag
     7321 ccca
//
LOCUS       DATDDI010000398         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_424969, whole genome shotgun sequence.
ACCESSION   DATDDI010000398 DATDDI010000000
VERSION     DATDDI010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424969"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(270..701)
                     /gene="sodN"
                     /locus_tag="VIU37_05765"
     CDS             complement(270..701)
                     /gene="sodN"
                     /locus_tag="VIU37_05765"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase, Ni"
                     /protein_id="HEY6013488.1"
                     /translation="MFQLTRWLAPTATARAHCDLPCGVYDPEQARIEAESCFRIMEKY
                     QASSDDTFRARAIGIKEERAELVKHHLDVLWHDYFKPEHLEAVPNLHELFWNANKQVS
                     KVKASVDPADGQKLLDLINDVDAAWKATGGPGKTRVAGRPG"
     gene            946..1434
                     /locus_tag="VIU37_05770"
     CDS             946..1434
                     /locus_tag="VIU37_05770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013489.1"
                     /translation="MPRRLPILMIAAAIAILGTPALVAAAEPTLTATVIPGQEIDVVG
                     AGFPADADVQLAILRNGADDGTQALHTDATGGFTATIDAGPGRGGVYTMTATSGSASA
                     TVEALAVETAGGLHSSPPPTDTVPGGPGSGLSIDRLAVLALIGAGVVSVALSAFGRRA
                     RA"
     gene            complement(1466..>1750)
                     /locus_tag="VIU37_05775"
     CDS             complement(1466..>1750)
                     /locus_tag="VIU37_05775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013490.1"
                     /translation="PRAVNRYLPVGGPAPVSIRDTIGIFERLLGQKVAQRGVAPGTPI
                     PGLPPLMAELLAMLDAHEAPIEMAATAVEFGVRLTSVEAWASELVPVVAR"
BASE COUNT          241 a          629 c          627 g          253 t
ORIGIN      
        1 cgcgatcgcc gggtccggcc gccacgcgct tgatcgccag cgaatcgtcg tccggctcac
       61 ggaacaccac gatcgagccg cgacgtggcc agtgcgtcac cgtcgggtcc acgagcagcc
      121 agtcgccggg ctccacggcc ggatgcatgc tcgcctccgc gacggcgatt cgccagggac
      181 cgcggaaacg ggaaagcccc gtcattcgac ggggccttcg agtcggcacg gtcgtgcgcc
      241 ggggcgcgga agccggtcgg cgggcgagat cagccgggcc ggccggcgac gcgcgtcttg
      301 ccggggccgc ccgtcgcctt ccaggcggcg tcgacgtcgt tgatgaggtc gagcagcttc
      361 tggccgtcgg ccgggtcgac cgacgccttg accttcgaca cctgcttgtt ggcgttccag
      421 aacagctcgt ggaggttggg gaccgcctcg aggtgctcgg gcttgaagta gtcgtgccac
      481 aggacgtcga ggtggtgctt gaccagctcg gcgcgctcct ccttgatgcc gatcgcacgg
      541 gcgcggaagg tgtcgtcgga gctggcctgg tacttctcca tgatccggaa gcacgactcg
      601 gcctcgatcc gggcctgttc ggggtcgtag acgccacacg gcaggtcgca gtgggcgcgg
      661 gcggtggccg tcggggccag ccagcgggtc aattggaaca tggcacgctc ctttggggac
      721 tgcaggtcac gcagtgggga tggaggtgac tctggcacat cgtccgggtc cacgaagtgt
      781 ccgagtgcgg ccgggggctg tcaaacgtct tcgaacttgc cgcactgaac gccaggccgg
      841 cgccgacgcg gtccggcgcg ggaaccgaat ccggcccgtg ctcgtcagga cgcccaatcg
      901 agccgtatcg tctcgctcga tccctcacga aaggactcgt cccgaatgcc ccgccgactc
      961 cccatcctca tgatcgccgc cgccatcgcc atcctgggca cgcccgcgct cgtcgcagcc
     1021 gccgaaccga cgctcaccgc tacggtgatc cccggccagg agatcgacgt cgtcggcgcg
     1081 ggcttcccgg ccgacgccga cgtccagctc gccatcctgc gcaacggtgc cgacgacggg
     1141 acccaggcgc tccacacgga tgcgaccggc gggttcaccg cgacgatcga cgcgggaccc
     1201 gggcggggcg gcgtgtacac gatgaccgcc acgtcgggat cggccagcgc gaccgtcgag
     1261 gcgctcgcgg tcgagacggc tggcgggctc cattcgtcgc cgccgccgac ggacacggtg
     1321 ccgggcggcc cggggtcggg tctgtcgatc gaccggctcg ccgtactcgc cctgatcggg
     1381 gccggcgttg tgagcgtcgc gctgtcggcg ttcggtcgcc gagcccgcgc gtagcgggcg
     1441 ccccgcgttc cctgaccgga ccggctcagc gcgccaccac cggaacgagc tcggaggccc
     1501 aggcttccac gctcgtgagc cggacaccga actcgacggc cgtggcggcc atctcgatcg
     1561 gcgcctcgtg cgcgtccagc atcgccagca gctcggccat gagcggcggc agcccgggga
     1621 tgggcgtccc gggcgccacg ccgcgctgcg cgaccttctg gccgagcagg cgctcgaaga
     1681 tcccgatcgt gtcgcggatc gagaccggcg ccggtccgcc gaccggcagg taccgattga
     1741 ccgccctcgg
//
LOCUS       DATDDI010000399         1531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_549874, whole genome shotgun sequence.
ACCESSION   DATDDI010000399 DATDDI010000000
VERSION     DATDDI010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549874"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1531)
                     /gene="dnaE"
                     /locus_tag="VIU37_05780"
     CDS             complement(<1..>1531)
                     /gene="dnaE"
                     /locus_tag="VIU37_05780"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEY6013491.1"
                     /translation="GEIFGKDGFFLELQDHGLAEQTRLNGQLLRLAPEVGLPLVVTND
                     LHYVREDQSEAHDVLLCVGTGSNLDTPGRMKFETDDFYLKSAAEMEALFPDQREALLN
                     TKRIGEMCDLELPLGQLRIPHFPVPDGHTTESWLRAECQRGLERRYGTVTPELQARLD
                     YELGVILSMGYAGYFLIVADFIRFAREQGIQTTCRGSAPGSIVTYTLGITPVDPILYQ
                     LPFERFLNPDRVTMPDIDVDFEDGRREEVIAYVGRKYGQDHVAQIITFGTMLARAAIR
                     DVGRVLGHSYGEVDRIAKAIPNQLGIKLDEALQIAPALREQVDADPAVKRIIDFARHL
                     EGVARNASTHAAGVVISREPLTELMPLQKATNSDGLMTQYEMHAIEALGLLKFDFLGL
                     SNLTILRQAVELVRDNRGIVIDLDHIPLDDAKTFELLASGETTGIFQLESAGMRRSVR
                     DLRPSSVYDLAAMVALYRPGPMDNIPAYIRRKHGQEPVSYLHPLLEPYLEKTYGIFVY
                     QE"
BASE COUNT          236 a          488 c          551 g          256 t
ORIGIN      
        1 cctcctggta gacgaagatc ccgtaggtct tctccaggta gggctcgagc agcgggtgca
       61 ggtaggagac cggctcctgg ccgtgcttcc gccggatgta ggccgggatg ttgtccatcg
      121 gaccgggccg atagagcgcc accatggccg ccaggtcgta gacggacgag ggccgaaggt
      181 cgcggacgga gcggcgcatg cccgcggact cgagctggaa gatgccggtc gtctcgcccg
      241 acgcgagcag ctcgaacgtc ttcgcgtcgt cgagcgggat gtggtcgagg tcgatcacga
      301 tgccgcggtt gtcgcggacg agctcgacgg cctggcggag gatggtcagg ttcgacagcc
      361 cgaggaagtc gaacttgagc aagcccagtg cctcgatcgc gtgcatctcg tactgggtca
      421 tcagcccgtc cgagttggtc gccttctgga gcggcatgag ctcggtcagc ggctcccgcg
      481 agatcaccac cccggcggca tgcgtcgagg cgttccgggc gaccccctcg agatggcggg
      541 cgaagtcgat gatccgcttg accgcggggt ccgcatcgac ctgctcgcgc agcgcgggcg
      601 cgatctggag cgcctcgtcg agcttgatcc cgagctggtt cgggatcgcc ttggcgatcc
      661 ggtccacctc gccgtaggag tggcccagca cgcggccgac gtcgcggatc gcggcgcggg
      721 cgagcatcgt gccgaaggtg atgatctggg ccacgtggtc ctggccgtac ttgcgcccga
      781 cgtaggcgat cacctcctcg cgccggccgt cctcgaagtc gacgtcgatg tccggcatcg
      841 tcacccggtc cggattgagg aatcgctcga acgggagctg gtagaggatc ggatccaccg
      901 gcgtgatccc gagcgtgtag gtcacgatcg atcccggcgc cgagccgcgg caggtcgtct
      961 ggatcccctg ctcacgggca aaccggatga agtcggcgac gatcaggaag tagccggcgt
     1021 agcccatcga caggatcacg ccgagctcgt agtcgagccg ggcctggagc tcgggcgtca
     1081 cggtcccgta gcgacgctcc agtccccgct gacactcggc gcgcagccag ctttccgtgg
     1141 tgtggccgtc cggcacgggg aagtgcggga tccggagctg gccgagcggc agctccaggt
     1201 cgcacatctc gccgatccgc ttcgtgttga ggagcgcttc gcgctggtcc gggaagaggg
     1261 cttccatctc ggccgccgac ttgaggtaga agtcgtcggt ctcgaacttc atccgacccg
     1321 gcgtgtcgag gttcgatccc gtcccgacgc agaggaggac gtcatgcgcc tcggactggt
     1381 cctcgcggac gtagtggagg tcgttcgtca cgacgagggg gaggccgacc tccggggcga
     1441 ggcgcaggag ctggccgttg agtcgcgtct gctccgccag gccatggtcc tggagctcca
     1501 ggaagaagcc gtccttgccg aagatctcgc c
//
LOCUS       DATDDI010000400         2949 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_50286, whole genome shotgun sequence.
ACCESSION   DATDDI010000400 DATDDI010000000
VERSION     DATDDI010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50286"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..2274
                     /locus_tag="VIU37_05785"
     CDS             115..2274
                     /locus_tag="VIU37_05785"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit A family protein"
                     /protein_id="HEY6013492.1"
                     /translation="MSPDRPIPPAVEPPAGTVEPAVTVDPAPATGAPADDAARIGVYV
                     CHCGTNIAGTVDVAAVRDWAAERLGPHGVVVARDYPFMCSSLGQELIEQDVHELGLNR
                     VVVAACSPHMHEKTFRGACQRAGLNPYLCELVSVREQVSWVHTDKVAATAKAEAMVAG
                     GVLRVREQVPLEPLKVPINETTLVVGGGIAGISAALEIADAGFPVHLVERQPSIGGHM
                     AQFDKTFPTLDCAACILTPKMVTAGSHPNITLHTWSEVTDVSGYVGNFSVKVLHRPRY
                     LDTDLCTGCGICQEKCPAKVVDPAYEAGVGYRKAIYRPFPQAVPKFPVLDPDSCIYFE
                     KGTCKACEKLCPPGAIRLDQQPEEVTLQVGNIVLATGFEAFDARRVEPYGYGRLANVF
                     TSLEFERMSNASGPTGGRIVLRDGVTEPQTVAIVHCVGSRDRNFNNYCSAICCMQSMK
                     FAHLVREHTDATVYECYIDIRAPGKAFDEFYQRVQDEGTIFVRGRVAEVTDVLRLPEE
                     ADQDGRLIVQVEDTLAGRQRRIPVDMVVLSVGLEPQPDAHEVARRFGITCSSEGWVIE
                     RHPKLDPFATMTEGVFAAGCALGPRDIPSSVASGAAAAARILGRIQQREMALEPIRAV
                     IDADRCSGCRICNDLCPFSAISFDDARGVTEVNPALCQGCGVCIAACPAGAIAGTGFS
                     DAQILSQIEGILMDRTMVVSDHGAADGAGARPEAVPA"
     gene            2271..2837
                     /locus_tag="VIU37_05790"
     CDS             2271..2837
                     /locus_tag="VIU37_05790"
                     /inference="COORDINATES: protein motif:HMM:NF014692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase iron-sulfur subunit"
                     /protein_id="HEY6013493.1"
                     /translation="MIDELVSREPAEPTPAAEAATPYEPVVLAFTCNWCSYRAADLAG
                     TARMKYPPNVRLVRLMCSGRLDPTFVMKAFASGADGVLMTGCWPADCHYRVQNVKALR
                     RFELLHRVLEQLGIEPQRFQRFYASAAEGSQLAAAFTRMIEDVRPLGPLGWGRVPAVS
                     PDEAEEEPDAETSADLAREREVLETVGA"
BASE COUNT          434 a         1053 c         1057 g          405 t
ORIGIN      
        1 cgaggtgccg gaaccggaac cggagccggc cgccgcgggc cacgcgacgc gcgagggccg
       61 ccgggcgtcg cgcccgcagg gcctgccgat gccgcgtctc gaggaggacg accgatgagc
      121 ccggatcggc cgatcccgcc cgcggtcgag ccgcccgctg ggacggtcga gcccgccgtg
      181 acggtcgacc ccgccccggc gactggcgcg ccggccgacg acgccgcccg gatcggcgtc
      241 tacgtctgtc attgcggcac caacatcgcg ggcacggtcg acgtcgcggc cgtgcgcgac
      301 tgggccgcgg agcggctcgg gccgcacggg gtcgtcgtcg cgcgcgacta cccgttcatg
      361 tgctccagcc tcggccagga gctgatcgag caggacgtcc acgagctcgg gctgaaccgc
      421 gtcgtggtgg ccgcctgttc gccgcacatg cacgagaaga ccttccgggg cgcctgccag
      481 cgggcgggcc tcaacccgta cctgtgcgag ctcgtctccg tccgcgagca ggtgtcctgg
      541 gtccacacgg acaaggtcgc ggcgacggcc aaggccgagg ccatggtggc gggcggcgtc
      601 ctccgcgtcc gcgagcaggt gccgctcgag ccgttgaagg tcccgatcaa cgagacgacc
      661 ctggtcgtcg gtggcgggat cgccggcatc tcggcggcgc tcgagatcgc cgatgccggg
      721 ttcccggtcc acctggtcga gcgccagccg tcgatcggcg gtcacatggc ccagttcgac
      781 aagaccttcc ccaccctcga ctgcgcggcc tgcatcctga ccccgaagat ggtgaccgcc
      841 ggttcccatc cgaacatcac gctccacacc tggagcgagg tgaccgacgt gtcgggctac
      901 gtcggcaact tctcggtcaa ggtgctccac cggccccggt acctcgacac cgacctgtgc
      961 accggctgcg ggatctgcca ggagaagtgc ccggccaagg tcgtggaccc ggcgtacgag
     1021 gccggggtcg gctatcgcaa ggcgatctac cggcccttcc cgcaggcggt tcccaagttc
     1081 ccggtcctcg acccggacag ctgcatctac ttcgagaagg gcacctgcaa ggcctgcgag
     1141 aagctctgcc cgccgggcgc gatccgcctg gaccagcagc ccgaggaggt cacgctccag
     1201 gtcggcaaca tcgtgctggc gaccgggttc gaggcgttcg acgcgcggcg cgtcgagccc
     1261 tatggctatg gccggctggc caacgtcttc accagcctcg aattcgagcg gatgagcaac
     1321 gccagcggac ccaccggcgg gcggatcgtc ctgcgtgacg gtgtgaccga gccgcagacg
     1381 gtcgccatcg tccactgcgt cggcagccgc gatcgcaact tcaacaacta ctgctcggcc
     1441 atctgctgca tgcagagcat gaagttcgcg cacctcgtac gcgagcacac ggacgcgacg
     1501 gtgtacgagt gctacatcga catccgggcg cccggcaagg ccttcgacga gttctaccag
     1561 cgcgtccagg acgagggcac gatcttcgtc cggggccgag tggccgaggt caccgacgtc
     1621 ctgcgcctcc cggaggaggc ggaccaggac ggccggctga tcgtccaggt cgaggacacg
     1681 ctggccggcc ggcagcgccg catcccggtg gacatggtgg tgctgtcggt ggggctcgag
     1741 ccgcagcccg acgcccacga ggtcgcgcgg cgcttcggca tcacctgcag ctccgagggc
     1801 tgggtgatcg agcgacaccc caagctcgat ccgttcgcga cgatgacgga gggcgtcttc
     1861 gccgccggct gtgcgctggg acctcgcgac atcccgtcga gcgtcgccag cggcgcggcg
     1921 gcggcggccc ggatcctcgg acggatccag cagcgcgaga tggccctgga gccgatccgg
     1981 gcggtcatcg acgccgaccg ctgctcgggc tgccggatct gcaacgacct ctgcccgttc
     2041 agcgcgatct cgttcgacga cgcgcgcggc gtgaccgagg tgaacccggc gctctgccag
     2101 ggctgcggcg tctgcatcgc ggcgtgcccg gccggggcga tcgccgggac cggcttcagc
     2161 gatgcgcaga tcctgagcca gatcgagggc atcctgatgg accggacgat ggtcgtctcc
     2221 gaccatggcg cggcggacgg ggcgggcgca cgacccgagg cggtgccggc atgatcgacg
     2281 agctcgtctc ccgggagccg gcggagccga cgccggcggc cgaggcggcc acgccctacg
     2341 aacccgtggt gctggcgttc acctgcaact ggtgcagcta ccgggccgcg gacctcgcgg
     2401 gcacggcccg gatgaagtac ccgcccaacg tccggctggt ccggctgatg tgctcgggcc
     2461 ggctcgaccc gacgttcgtg atgaaggcct tcgcgagcgg cgcggacggc gtcctgatga
     2521 ccggctgctg gccggccgac tgccactacc gcgtccagaa cgtgaaggcg ctccgccggt
     2581 tcgagctgct ccaccgggtg ctcgagcagc tgggcatcga gccgcagcgg ttccagcggt
     2641 tctacgccag cgcggcggag ggctcgcagc tggccgccgc gttcaccagg atgatcgagg
     2701 acgtccggcc gctcggcccg ctgggctggg ggcgggtgcc cgccgtctcc ccggacgagg
     2761 cggaggagga accggacgcc gagacgagcg ccgacctcgc gcgcgagcgc gaggtcctcg
     2821 agacggtggg cgcatgagca ccaacggcaa gcaccgcttc gcgatgtact gggccgcctc
     2881 gtgcggcggt tgcgacatca gcgtcatcaa cctccacgag gccatcctcg acgtggccga
     2941 gcagttcga
//
LOCUS       DATDDI010000401         1588 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_237641, whole genome shotgun sequence.
ACCESSION   DATDDI010000401 DATDDI010000000
VERSION     DATDDI010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237641"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VIU37_05795"
     CDS             complement(<1..261)
                     /locus_tag="VIU37_05795"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013494.1"
                     /translation="MERAEDRILAALDRLAAASVGLTTVALAEHGRDLTLPQWRALVV
                     ISTSTGLRASDVADRVGMSRPSMSRLIRRLQRRGVIVVEDDPS"
     gene            370..618
                     /locus_tag="VIU37_05800"
     CDS             370..618
                     /locus_tag="VIU37_05800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013495.1"
                     /translation="MRIKVVDWQDRDFVAALDADLKTALLDGVDADCAAVADRVQSLL
                     RSDGYPAARIDYSRSVADVLARVANWTVRRDAGAEARA"
     gene            699..>1588
                     /locus_tag="VIU37_05805"
     CDS             699..>1588
                     /locus_tag="VIU37_05805"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEY6013496.1"
                     /translation="MASALATITAVVLLDMIGLVTNLCYYGRADVSLVQPPTTGLGPG
                     SVLIPVAGGLVIGLLARYGSERIRGHGIPEAMESILVGGSKVQPRLALLKPISSAISI
                     GTGGPFGAEGPIIMTGGAIGSLIGQLEHLSAAERKTLLVAGAAAGMTAVFGTPLAAVL
                     LGTELLLFEWRPRSLLPVATAAALAAAIRVPLAEHGLVAAAPLFPVPAHPPLDDAGLV
                     GAMAVGLVGGLVAWALTACVYGAEDLFKRLPVHWMWWPAIGGAVVGVGGLVDPRALGV
                     GYDSLRAELAGSLAFDALVLL"
BASE COUNT          195 a          553 c          591 g          249 t
ORIGIN      
        1 gctgggatcg tcttccacca cgatcacgcc ccggcgctgg agcctccgga tcagccggct
       61 catcgacgga cgcgacatac cgacccggtc ggcgacatcg ctggctcgca ggccggtcga
      121 cgtggagatg acgaccaggg cccgccactg cggcagggtc aggtcgcggc cgtgctcggc
      181 gagggccacc gtcgtcagcc cgacggaggc tgcggcaagg cggtccagcg cggccaggat
      241 ccggtcttcc gcccgctcca tgcgatggcc tccttgtccc gttgcggacg atcgacgcgc
      301 acagtatgat gggcaaacta gttgctcaat gacaactggt tggacggagg acgcgcgatg
      361 gactgccgcg tgaggatcaa ggtcgtcgac tggcaggacc gcgacttcgt cgccgcactg
      421 gatgccgatc tcaagacggc cctgctcgac ggcgtcgatg ccgactgtgc cgctgtcgcg
      481 gaccgggtcc aatcgcttct tcgatccgac gggtatccgg ccgccaggat cgactactcg
      541 cggtcggtcg ccgacgtgct ggcacgggtc gccaactgga cggtgcgccg tgacgcgggc
      601 gcggaggcac gcgcctgagc gtcgccgtcg aacgcgagca ggagctgggc gacttcacgc
      661 tgacggtccg cgacctgcgg cttgtgccgc tcgcgctcat ggcgagcgcg ctggccacga
      721 tcaccgcggt cgtcctgctc gacatgatcg ggctggtgac caacctctgc tactacggcc
      781 gagccgacgt gtcgctggtc cagccgccga cgaccgggct cggccccgga tcggtgctga
      841 tcccagtcgc cggcggcctg gtgatcgggc tgctcgcgcg ctacggttcg gagcggatcc
      901 ggggccacgg catccccgag gcgatggaat cgatcctcgt cggcggcagc aaggtccagc
      961 cgcgcctggc cctgctcaag ccgatcagtt cggccatcag catcgggacc ggcggcccgt
     1021 tcggcgcgga gggcccgatc atcatgaccg gcggcgcgat cgggtcgctg atcggccagc
     1081 tcgagcacct gtccgcggcc gagcgcaaga cgctgctggt cgccggggcg gcggcgggca
     1141 tgacggcggt gttcggcacg cccctggcgg cggtcctgct ggggaccgag ctgctgctct
     1201 tcgagtggcg gccacggtcc ctgctcccgg tcgccaccgc ggcggcgctc gcggcggcca
     1261 tccgcgtgcc gctcgcggag catgggctgg tggccgcggc acccctcttc ccggtcccgg
     1321 cccatccgcc gctcgacgat gccggcctgg tcggggcgat ggcggtcggg ctcgtcgggg
     1381 gcctggtcgc gtgggcactg accgcgtgcg tgtacggtgc cgaggacctg ttcaagcgcc
     1441 tgccggtcca ctggatgtgg tggccggcga tcggtggggc ggtggtcggg gtcggtggcc
     1501 tggtcgaccc gcgcgcgctc ggcgtcggct acgactcgct gcgggcggag ctcgcgggca
     1561 gcctggcgtt cgacgccctc gtgctgct
//
LOCUS       DATDDI010000402         1565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_362544, whole genome shotgun sequence.
ACCESSION   DATDDI010000402 DATDDI010000000
VERSION     DATDDI010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362544"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VIU37_05810"
     CDS             complement(<1..791)
                     /locus_tag="VIU37_05810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013497.1"
                     /translation="MSDEPRTIVFFPEGAFGPTNNCVGIGQVLRARGHRVVFIVEESF
                     AGTLEAKGFEERLMRLGPKPEVEEAPGQFWIDFIRDTAPVFRKPTIVQLEEFIAPTWQ
                     ALIDGAKYVDARLTEIIGELGPDVLVEDNVVGFPALAASGRPWVRIASCNPAELKDPL
                     VPPFSSGYPVAERADWPAFVAEVDRTHREMWTEFDAFCRDHGDHGLRYGPLGPDFIAE
                     SPWLNLSLYPAEVDYARARPLSPTWHRLDSCVRAADTRWDLPEHLR"
     gene            complement(921..>1565)
                     /locus_tag="VIU37_05815"
     CDS             complement(921..>1565)
                     /locus_tag="VIU37_05815"
                     /inference="COORDINATES: protein motif:HMM:NF014420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     component T"
                     /protein_id="HEY6013498.1"
                     /translation="GPPLVLAGVAILAGVAFGSVRIETLAKAIAPLWLAALGIGLFNA
                     LYSTSNGDPSAASLVDAGPFRITVLAAANGVALALRVIAIASVGAVFTLTTDPTRLAD
                     SLVRQAHVSPRFAYGALAAYQAIPRFAEDLTTLRQARRIRGLRGSWHPRLLVTLLVLA
                     IRHGDRMALAMDARAFGAAPMSHYREVRWSWLDAAVGIGSVVVLVGALAIGRVA"
BASE COUNT          246 a          559 c          569 g          191 t
ORIGIN      
        1 cggagatgct cgggcaggtc ccacctggtg tcggccgcgc gaacgcacga atccaggcga
       61 tgccacgtgg gcgagagcgg ccgtgcgcgg gcgtagtcga cttcggccgg gtagagcgac
      121 aggttgagcc agggcgactc ggcgatgaag tcggggccga gcgggccata ccggagcccg
      181 tggtcgccgt gatcgcggca gaacgcgtcg aattcggtcc acatctcgcg gtgcgtgcga
      241 tcgacctcgg ccacgaaggc cggccagtcg gcccgctcgg cgaccggata gccggacgag
      301 aagggcggca ccagcgggtc cttgagctcg gccgggttgc aggaggcgat tcggacccag
      361 ggccggccgg acgcggcaag cgccgggaag ccgacgacgt tgtcctcgac gagcacgtcc
      421 ggcccgagct cgccgatgat ctccgtcagc cgcgcgtcga cgtatttcgc gccgtcgatc
      481 agggcctgcc aggtgggggc gatgaactcc tcgagctgga cgatcgtcgg cttgcggaag
      541 acgggcgccg tgtcgcggat gaagtcgatc cagaactggc cgggcgcctc ctcgacctcg
      601 ggcttcgggc ccagccgcat cagccgctcc tcgaaaccct tggcctcgag cgtgccggcg
      661 aacgactcct cgacgatgaa cacgacgcgg tggccgcgcg cccgcagcac ctggccgatc
      721 ccgacgcagt tgttggtcgg cccgaaggcg ccctccggga agaacacgat ggtgcgcggc
      781 tcgtcgctca cgggcggatc atggcggagg agcggcgtgg ctgcggtcat tcccatggtg
      841 cggaacggcg tcgggcagcg tggtgccggt gccgggtgcc acgggccgtg atggggccgg
      901 accccggcgg ccgactcctc tcatgccacg cgcccgatcg ccagcgcccc cacgaggacc
      961 accacggacc cgatcccgac ggccgcgtcc agccacgacc agcggacctc gcggtagtgg
     1021 ctcatgggag ccgctccgaa cgcccgcgcg tccatcgcca gcgccattcg gtccccgtgc
     1081 cggatcgcca gcacgagcag ggtcaccagc agtcgcggat gccacgaccc gcggaggccg
     1141 cggatccggc gcgcctgccg aagcgtggtc aggtcctcgg caaacctcgg gatcgcctgg
     1201 taggcggcga gcgccccgta cgcgaaccgc ggcgagacgt gcgcctggcg gacgagcgag
     1261 tcggccagcc gcgtcggatc ggtggtcagc gtgaacaccg ccccgacgct cgcgatcgcg
     1321 atcacccgca aggccagcgc gaccccgttg gcggcggcca ggacggtgat ccggaacggc
     1381 ccggcatcca ccagcgacgc ggcactcgga tcgccgttgc tcgtcgagta cagcgcgttg
     1441 aaaagcccga tcccgagcgc cgccagccac agcggcgcga tggccttcgc cagggtctcg
     1501 atccgaaccg agccgaacgc cacgccggcc aggatcgcca cgccggccag gaccagcggc
     1561 ggacc
//
LOCUS       DATDDI010000403         3385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_445394, whole genome shotgun sequence.
ACCESSION   DATDDI010000403 DATDDI010000000
VERSION     DATDDI010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445394"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VIU37_05820"
     CDS             <1..873
                     /locus_tag="VIU37_05820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013499.1"
                     /translation="SGWNELLYRTWYLTGAVWTAGWLGLGTAFLLGRTRFGYSFALCL
                     FLAGLFTFLVRNKPEYQGAGALPLLYFIVAGLLALAVAVETYFSNERWPLLAAGAVVG
                     ATGLSLVLMVTTTVAAPGYALDPATGAPVATLFPPELRLLTPFLNITGAFALILGAIF
                     STYVFMPKRRVLAYSLDPNQPGDQFLFNLLIAPVAIAVNLVASLPGAARALVAGRLHS
                     RVPATILIAVGAFVATLGDTLNRFGMTDWFQLGKFLGVLFLFVGFLVSIEVFREIRIP
                     FTSVRLGGARHESA"
     gene            884..1669
                     /locus_tag="VIU37_05825"
     CDS             884..1669
                     /locus_tag="VIU37_05825"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6013500.1"
                     /translation="MAASTIPDRPGLTRGMTATGPAAAPAIVFLHGTRLSRTVWTPQL
                     EALGDEFRAIALDLPGHGDRAAEAFSLSGAVDLVAATIRDQAADGRAVVVGLSLGGYV
                     AITLAATHPELVRGLVIAGASAEPAGVRRLAFRTLAAALARLDGPLLDRFSTWSFRSR
                     YPAAIADPIVAGGFWSANGAVALRALAGERFGPRLPGFGGPILIINGQYDLLFRRSAR
                     RFAATAHDVRRVVLAGAVHLSNLDRPGAFTLAVRRFARSATVA"
     gene            1735..2613
                     /gene="galU"
                     /locus_tag="VIU37_05830"
     CDS             1735..2613
                     /gene="galU"
                     /locus_tag="VIU37_05830"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEY6013501.1"
                     /translation="MRVRKAVFPAAGWGTRFLPATKAQPKEMLPLVDKPIIQYAVEEA
                     VAAGVEQVIIVTSSQKRAIEDHFDLSFELEHLLEDKGDIEMLRQVRAISDLAQVAYIR
                     QKEQLGLGHAVLMAKDLIGHEPFAVILPDDVVVGERPCIGQLIHAYHQHHGSVIAVME
                     VPPEQTSRYGVIGSEPSADPLDHGRLHRITSLVEKPATEDAPSNLAIIGRYVLTPKIF
                     DKLEQTQRGAGGEIQLTDAIAALMEEQEVFGYEFEGTRYDAGTTMGWLQASVELALGR
                     PDLGPAFREYLQGLRL"
     gene            2809..>3385
                     /locus_tag="VIU37_05835"
     CDS             2809..>3385
                     /locus_tag="VIU37_05835"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY6013502.1"
                     /translation="MADIGQILGGRYRLIELLGQGGMATIYRAADTGLGRDVALKLLR
                     SEYLRDPDFSSRFRQEAQAAASLSHPNVVTVYDYGEDPSGPFIVMELVDGEDLATILR
                     RSGSLPPRQAARIAAGVGRALGAAHASGIVHRDVKPGNVLIGRDGRVKVVDFGIARAV
                     AEAQVTLPGTTLGSVHYFSPEQARGDPTTAAS"
BASE COUNT          452 a         1246 c         1156 g          531 t
ORIGIN      
        1 agtggctgga acgagctcct gtatcggacc tggtacctca ccggtgccgt ctggaccgcc
       61 ggctggctcg ggctcggcac ggcgttcctg ctcgggcgaa cgcggttcgg ctacagcttc
      121 gctctgtgcc tcttcctggc cgggttgttc accttcctgg tccgcaacaa gcccgagtac
      181 cagggggccg gcgcgctccc gctgctctac ttcatcgtcg ccggcctgct ggctctggcc
      241 gtggccgtcg aaacctactt cagcaacgag cgctggccgc tgctcgccgc cggggccgtc
      301 gtgggggcga ccgggctcag cctcgtgctg atggtgacca ccaccgtcgc cgcgccgggc
      361 tacgcgctcg accccgccac cggcgccccc gtcgcgacac tgttcccacc ggagctgcgg
      421 ctgttgacgc cgttcctcaa catcaccggc gcgttcgcgc tgatcctggg ggcgatcttc
      481 tcgacctacg tattcatgcc gaagcgacgc gtgctggcct actcgctcga tcccaaccag
      541 cccggcgacc agttcctctt caacctgctg atcgcacccg tggcgatcgc cgtcaacctg
      601 gtcgcctcgc tgccgggggc ggcacgcgcg ctggtcgccg gccggctcca cagccgggtg
      661 ccggcgacga tcctgatcgc ggtcggcgcg ttcgtggcga ccctcggcga caccctcaac
      721 cggttcggga tgaccgactg gttccagctc ggcaagttcc tcggggtcct gttcctgttc
      781 gtgggcttcc tcgtctcgat cgaggtcttc cgcgagatcc ggatcccgtt cacttcggtc
      841 cgactgggtg gtgcccggca cgagtcggcc tgagagggtg ccggtggcgg cgagcacgat
      901 cccggaccgg cccggcctga cgcgcggcat gacggccacc ggaccggccg ccgcgcccgc
      961 gatcgtcttc ctccacggga cgcggctgag ccggacggtc tggacgcccc agctcgaggc
     1021 gcttggcgac gaattccggg cgatcgcgct ggaccttccc ggacacggcg accgtgccgc
     1081 cgaggccttc agcctctccg gtgcggtcga cctggtggcc gcgacgatcc gggatcaggc
     1141 ggcggacggg cgggccgtgg tcgtcggcct ctcgctggga gggtacgtgg ccatcaccct
     1201 ggcggccacg cacccggagc tcgtccgcgg gctcgtgatc gcgggtgctt cggccgagcc
     1261 ggccggggtc cggcgcctcg cgttccgcac cctggccgcc gccctggccc gcctcgacgg
     1321 cccgctcctc gaccggttca gcacctggtc cttccggtcc cgctacccgg cagcgatcgc
     1381 cgaccccatc gtcgccggtg gcttctggtc ggccaacgga gccgttgccc tgcgggccct
     1441 cgcgggcgag cggttcggcc cgcgcctgcc cggcttcggc gggccgatcc tgatcatcaa
     1501 cgggcaatac gacctgctgt tccggcggtc tgcgcggcgg ttcgcggcca cggcgcacga
     1561 cgtgcgccgc gtggtgctgg ccggggccgt ccacttgtcc aacctcgacc ggccgggcgc
     1621 gttcactctc gccgttcgcc gattcgcaag gtcggcgacg gtcgcgtaac gggcccgcga
     1681 gggggccagg ggtatacttc cgaggccagc ccaaccccgt caccgcgagg ttcgatgcgc
     1741 gttcgaaagg ccgtcttccc cgccgccggc tggggcaccc gcttcctccc ggcaaccaag
     1801 gcgcagccga aagagatgct gcccctggtc gacaagccga tcatccagta cgcggtcgag
     1861 gaagccgtcg ccgccggggt cgaacaggtc atcatcgtca cctccagcca gaagcgggcg
     1921 atcgaggacc acttcgacct gtcgttcgag ctcgagcacc tgctcgagga caagggcgac
     1981 atcgagatgc tccgccaggt ccgcgcgatc agcgatctcg cccaggtcgc ctacatccgc
     2041 cagaaggagc agctcggtct cggccacgcc gtgctgatgg ccaaggacct gatcgggcat
     2101 gagccgttcg ccgtcatcct ccccgacgac gtcgtggtcg gcgagcgacc ctgcatcggg
     2161 cagctcatcc acgcctacca ccagcaccat ggttcggtca tcgctgtcat ggaggtcccg
     2221 ccggagcaga ccagccgcta cggcgtcatc gggtcggagc caagcgccga tccgttggac
     2281 cacggccggc tccaccggat caccagcctc gtcgagaagc cggcgaccga ggatgcgccc
     2341 tcgaacctgg cgatcatcgg ccgctacgtc ctgacgccca agatcttcga caagctcgag
     2401 cagacccagc gtggcgccgg cggcgagatc cagctgaccg atgccatcgc ggccctcatg
     2461 gaggagcagg aggtcttcgg ctacgagttc gaggggacgc gctacgacgc ggggaccacg
     2521 atgggctggc tccaggcgtc ggtcgagctg gccctcggcc ggccggacct cgggccggcg
     2581 ttccgggagt acctgcaggg cctccggctc tgaagcgggc gcaccacaat cggcggccgc
     2641 cgatcgtccg ttgggcgacc cgcgcgccat gccgaccctg ggccggcgcg tgcagccgct
     2701 ccgggaggac gtcggatcgg acgggcggca ggcgccgcaa cgtgcggtac gattctcgcc
     2761 ggaccatcgg ataaccaggg cgacgtcgtc gaacgagggg cttgccgctt ggcggatatc
     2821 gggcagattc tcgggggtcg ctaccgactg atcgagctgt tgggccaggg cgggatggcg
     2881 accatctacc gggccgccga caccgggctg ggccgtgacg tcgccctcaa gttgctccgc
     2941 tccgaatacc tgcgcgatcc cgacttctcg tcgcggttcc ggcaggaagc gcaggcggcc
     3001 gcctcgctca gccaccccaa cgtcgtcacc gtctacgact acggcgagga cccgtcgggg
     3061 ccgttcatcg tcatggagct ggtcgacggc gaggacctgg cgaccatcct gcgccggagc
     3121 ggttcgctcc ccccgcgaca ggccgcccgg atcgcggccg gcgtggggcg ggccctggga
     3181 gccgcgcacg ccagcgggat cgtccaccgc gacgtcaaac ccgggaacgt cctgatcggg
     3241 cgtgacgggc gggtcaaggt cgtcgacttc ggcatcgcgc gcgccgtcgc tgaggcgcag
     3301 gtgacgctgc cgggcacgac tctcggctcc gtccattact tcagcccgga gcaggcccgt
     3361 ggggacccca ctacggcagc gtccg
//
LOCUS       DATDDI010000404         1863 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_237763, whole genome shotgun sequence.
ACCESSION   DATDDI010000404 DATDDI010000000
VERSION     DATDDI010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237763"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..455
                     /locus_tag="VIU37_05840"
     CDS             <1..455
                     /locus_tag="VIU37_05840"
                     /inference="COORDINATES: protein motif:HMM:NF025067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HEY6013503.1"
                     /translation="TELRFYVAASMAWLTIGGLVLAVLVLRDRMRWLVHGLAFAAVAV
                     TLAVTAIGPQAFITDQNVARVLDPALVPAAGYAGLDTEYLAQFGDDAIPALVRAWPRV
                     DAATRAELQPVLIARWHRLRDDPATSSWVSWNLSRERARSALASLFRP"
     gene            complement(459..>1863)
                     /locus_tag="VIU37_05845"
     CDS             complement(459..>1863)
                     /locus_tag="VIU37_05845"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY6013504.1"
                     /translation="TDDPWGDRQQGLDVDEFLAMAAGGLSFAWAPGTRWEYSNLGYGL
                     LGRLITAVAGREYRDVVRERILAPLGMTSTGYLEEEVPPDRLARGYLWRGDRFLEEPM
                     DGYGALAAMGGIFTTVRDLATWVRGFIEAYPPRDEPGMAHPLSRASRREMQQPMVSFD
                     AGITSPTADADPELDGAAYGFGLFAFEHLRWGRIVGHSGGYPGFGSNMRWHAPSGLGV
                     VVLANGRYAPSSLLARDLLLSLLDAEAVPSRRVRPNAATAAARTAVEGLLDRWDDAVA
                     ASLFAMNVDLDEPIVLRRAAMARLRAVHGRLVPDPAEEPVSHSPFQLAWWMRGERGRV
                     KLEILLSPERPPKVQALVLTSVPEPPPALRAAAERIAASLVVGEGEAPVWPSELAIDA
                     SLDVSALSRALRATEARFGTVRLGSVIAGDGNREATFRLDCTRGHLDLTLARDPASGR
                     LTKVRLRPDRLAPADFD"
BASE COUNT          253 a          677 c          689 g          244 t
ORIGIN      
        1 ggacggagct gcgcttctac gtggccgcgt cgatggcatg gctcacgatc ggcgggctcg
       61 tcctggccgt gctcgtcctc cgggatcgga tgcggtggct cgtgcacggc ctcgcgttcg
      121 ccgccgtcgc ggtgacgctc gcggtgacag ccatcgggcc gcaggcattc atcaccgacc
      181 agaacgtcgc ccgtgtgctc gatcccgccc tcgttccggc agcaggctac gcagggctcg
      241 acacggagta cctggcccag ttcggcgacg acgcgatccc ggccctcgtc cgggcgtggc
      301 cgagggtgga tgccgccacg agggccgagc tgcaacccgt cctgatcgcg cggtggcatc
      361 ggctccggga cgatcctgcg acctcgagct gggtgtcgtg gaacctctcg cgcgagcgag
      421 cgcgatcggc gctggcgtcg ctgttccgtc cctgacgctc agtcgaagtc ggccggggcg
      481 aggcggtcgg ggcgaaggcg caccttcgtc agccggccgg aggccgggtc gcgggcgagg
      541 gtcagatcga ggtgcccgcg cgtgcagtcg agccggaacg tggcttcgcg gttgccgtcg
      601 ccggcgatga ccgagccgag ccggaccgtg ccgaatctcg cctccgtggc ccgcagcgct
      661 cgggacagcg ccgagacgtc cagcgacgcg tcgatcgcga gctccgacgg ccagaccggt
      721 gcctcgccct ccccgacgac gagcgatgcg gcgatccgct ccgcggcggc tcgcagcgcg
      781 ggcggcggct cgggcacgga ggtgaggacc agggcctgga ccttcggcgg ccgctcgggc
      841 gagaggagga tctccagctt cacccggccg cgctcgccgc gcatccacca cgcgagctgg
      901 aatgggctgt gcgagaccgg ctcctcggcc ggatccggca ccagccggcc gtgcaccgcc
      961 cggaggcgcg ccatcgcggc gcgccggagc acgatcggct cgtcgagatc cacgttcatc
     1021 gcgaacaggc tcgcggcgac cgcatcgtcc cagcgatcga gcaggccctc gacggcggtc
     1081 cgtgccgccg cggtcgccgc gttcggccgg acccgacggc tgggcacggc ctcggcgtcg
     1141 aggagcgaga gcagcaggtc gcgggcgagc aggctggacg gggcgtaccg gccgttggcg
     1201 agcaccacca cgccgagccc ggagggggcg tgccagcgca tgttcgagcc gaagcccgga
     1261 tagccgccgc tgtggccgac gatccggccc caccgaaggt gctcgaacgc gaacagcccg
     1321 aagccgtagg cggcgccatc gagctcgggg tcggcatcgg cggtggggga cgtgatcccg
     1381 gcgtcgaacg agaccatcgg ctgctgcatc tcgcgcctgc tcgcacgact cagcgggtgc
     1441 gccatgcctg gctcgtcccg tggcgggtag gcctcgatga agccgcggac ccacgtcgcc
     1501 aggtcgcgga cggtcgtgaa gatcccgccc atagccgcca gcgccccgta cccatccatc
     1561 ggctcctcga ggaatcggtc gccgcgccac aggtagccgc gtgcgaggcg gtccgggggg
     1621 acctcctcct cgaggtagcc ggtcgaggtc atgccaagcg gcgccaggat ccgctctcgg
     1681 acgacgtcgc ggtactcgcg gccggcgacc gcggtgatga gccgaccgag gaggccgtag
     1741 ccgaggttcg agtactccca gcgcgtgccc ggcgcccagg cgaacgacag cccgcctgcg
     1801 gccatcgcca ggaactcgtc cacgtccagg ccctgctgcc ggtcgcccca cggatcgtcc
     1861 gtc
//
LOCUS       DATDDI010000405         1644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_591502, whole genome shotgun sequence.
ACCESSION   DATDDI010000405 DATDDI010000000
VERSION     DATDDI010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_591502"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VIU37_05850"
     CDS             complement(<1..316)
                     /locus_tag="VIU37_05850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013505.1"
                     /translation="MCGVFGAVLPNGEPTDAAAIAALGLFALQHRGQESAGLAVSDGE
                     QLMLYKDLGMISSVLDERRIPSFRGELAIAHCRYSTTGSTVWENAQPTYRLGPRRALA
                     IGH"
     gene            complement(320..>1644)
                     /locus_tag="VIU37_05855"
     CDS             complement(320..>1644)
                     /locus_tag="VIU37_05855"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HEY6013506.1"
                     /translation="KAHRPDTPTLRKPEWIRVKAPVSKEYAVTKSIVREHNLTTVCEE
                     AGCPNIGECWTNRHATMMIMGDTCTRACAFCNVKTGMPGALDAGAVLLALLGSANLSS
                     RRAVFEQYDSTVGADTVAGPGHGAAVLRVRGTSKALVATTDGNHSVGVADPWLGAALS
                     VAEATRNVSITGARPLGVTNCLNYGDPTRPDAFWQLSEGVRGLADACVALGLPVTGGN
                     VSLYNESPAGRIAPTPEIGVVGLLDDISTLTGPAFVEAGDAIVLVGDATPGLVGSAYA
                     QLAGVTADDTPPDLDLAREAAVQALVREAIARGLVASAQDVSGGGLAVALAESAIWGG
                     LGAIVRLAHVGSPAVGLFGESPSRLVLTARPAHAAALVLLARQHGLPVEPIGTVGGDR
                     LVIEATSATAMGAAEERGGRVADTLEVPLTELRHAWEHGLARALGWEG"
BASE COUNT          227 a          616 c          573 g          228 t
ORIGIN      
        1 tgtggccgat ggccagcgcc cgccgtggcc ccagccggta ggtcggctgg gcgttctccc
       61 agaccgtcga gccggtggtc gagtagcggc agtgggcgat cgcgagctcg ccccggaacg
      121 acgggatccg ccgctcgtcg aggaccgagc tgatcatccc gaggtccttg tagagcatga
      181 gctgctcgcc gtcgctgacc gccagtcccg cggattcctg gccgcggtgc tggagcgcga
      241 acagcccgag cgccgcgatc gccgccgcat ccgtcggctc gccgttcggg agaaccgcgc
      301 cgaagacgcc gcacatgcct cagccctccc agccgagcgc ccgggccagc ccgtgctccc
      361 aggcgtgtcg gagttcggtc agcgggacct ccagcgtgtc ggcgacccgc ccgccgcgct
      421 cctccgccgc gcccatcgcc gtcgccgaag tcgcctcgat cacgagccgg tcgccaccga
      481 ccgtgccgat cggttcgacc ggcaggccgt gctgccgggc caggaggacg agcgcggcgg
      541 catgagccgg acgcgcggtc aggaccagtc tcgacgggct ctcgccgaac agccccaccg
      601 ccggtgagcc gacgtgcgcc agccgcacga tcgccccgag gccgccccag atggcgctct
      661 ccgccagcgc gaccgcgagc cctccacccg agacgtcctg ggcggacgcc accaggccgc
      721 gggcgattgc ctcgcgcacc aacgcctgga cggccgcctc gcgggcgagg tcgagatcgg
      781 gcggcgtgtc atcggccgtc accccggcga gttgcgcgta ggcggagccg acgaggccgg
      841 gcgtcgcgtc gccgaccagc acgatcgcgt ctccggcctc cacgaaggcc gggccggtca
      901 gggtcgaaat gtcgtcgagg agtccgacga cgccgatctc cggcgtcggc gcgatccgcc
      961 ccgcgggcga ttcgttgtag agcgagacgt tgccgccggt gaccggcagg ccgagcgcca
     1021 cgcacgcatc ggccagcccg cggacgccct cgctcagctg ccagaaggcg tccggccggg
     1081 tcgggtcacc gtagttgagg cagttggtca cgccgagcgg tcgtgccccg gtgatcgaca
     1141 cgttccgggt cgcctcggcg accgacaggg cggcacccag ccacggatcc gcgaccccga
     1201 ccgagtggtt gccgtcggtg gtggccacga gggccttgga cgtgccccgg acccggagga
     1261 ccgccgcacc gtgacccggt ccggccaccg tgtccgcccc gacggtcgag tcgtactgct
     1321 cgaagacggc ccgccgtgac gacaggttgg ccgatcccag cagcgccagc aggacggcac
     1381 ccgcatccag cgcgccgggc atgccggtct tcacattgca gaaggcgcag gcgcgcgtgc
     1441 aggtgtcgcc catgatcatc atggtggcgt gccggttggt ccagcactcg ccgatgttcg
     1501 ggcaaccggc ttcttcacac accgtcgtca gattgtgctc gcggacgatc gatttggtga
     1561 ccgcgtattc cttcgacacc ggcgccttca cgcgaatcca ttccggtttc cgcaacgtcg
     1621 gcgtgtccgg ccggtgtgcc tttt
//
LOCUS       DATDDI010000406         1528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_633228, whole genome shotgun sequence.
ACCESSION   DATDDI010000406 DATDDI010000000
VERSION     DATDDI010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633228"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VIU37_05860"
     CDS             <1..847
                     /locus_tag="VIU37_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013507.1"
                     /translation="LVATSLFSGFGVARRLQGGTAIRRRRMLAGLAFALAATALSGAA
                     FGAAAVANEMALRDRPTAASRFGPTTGAEQPPLCDMPLAAGRTARLSLHLEGTIDLRP
                     LGSVDLAGVRVGDDFRWQAYVATSDQLGLYGEARSGQQGWLRTPTGGWHPVPAGSVSD
                     GTVDTQALAVALSEGYRATAEDRGVEVIEGARARRCRVAVDGEIFETAFPPVRLLVGT
                     ADLHRWRGQLDYWVFLDGQVGQIAGSINGEATAVVPEAIQGTVEVLLTATERGEGLVV
                     YPPDR"
     gene            844..>1528
                     /locus_tag="VIU37_05865"
     CDS             844..>1528
                     /locus_tag="VIU37_05865"
                     /inference="COORDINATES: protein motif:HMM:NF039255.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEY6013508.1"
                     /translation="MTLDDERGPYAAKRDRLARMTRLVSILQAHPDGVRTADVAERVG
                     MSVRTVYRDLRAIDEEIGVPVWADGGRWGIDQEKAFLPPLKLTQSEAMAVVLSARLMV
                     RYADKYDPDLASAFEKLEQGLPPALAEHVERTLDILSKAPRDDRFIANVRLLTKAWAE
                     RRVVTIDYEPALYDRGASPRRATVRPYLLEPSLQTHALYLMGYDEERAALRTFKIERI
                     RTAALTPRTF"
BASE COUNT          205 a          542 c          576 g          205 t
ORIGIN      
        1 cctggtcgcg acgagcctgt tcagcggctt cggcgtcgcg cggcgcctgc agggcgggac
       61 ggcgatccgg cggcggcgga tgctggccgg gctggcgttc gccctggcgg ccaccgccct
      121 gtcgggcgcg gcgttcgggg cggcggcggt cgcgaacgag atggcgctgc gcgaccggcc
      181 cacggccgcg tcacggttcg gcccgacgac cggtgcggag cagccgccgc tgtgcgacat
      241 gccgctggcg gccggccgga ccgctcgcct gagcctccac ctggaaggca cgatcgatct
      301 ccgtccgctc gggtcggtcg acctggcggg cgtccgtgtc ggcgacgact tccgctggca
      361 ggcgtacgtc gccacgagcg accagctcgg cctgtacggc gaggcccgga gcggccaaca
      421 gggctggctc cgcacgccga cgggcggctg gcacccggtg ccggccggtt cggtcagcga
      481 cgggacggtc gacacgcagg cgctcgccgt cgcgctcagc gagggttacc gggcgaccgc
      541 cgaggaccgc ggcgtggagg tcatcgaggg cgcccgggcg cggcgctgcc gtgtggcggt
      601 cgacggcgag atcttcgaga cggccttccc gccggtgcgg ctcctggtcg gcacggccga
      661 cctccaccgc tggcgcggcc agctggacta ttgggtcttc ctcgacggcc aggtcggcca
      721 gatcgccggc agcatcaacg gcgaggcgac ggcggtggtc ccggaggcga tccagggaac
      781 ggtcgaggtg ctgctcacgg ccacggagcg cggggagggc ctcgtcgtct atcctcctga
      841 cagatgacgc tggacgacga gcgtgggccg tacgccgcga aacgcgatcg gctcgcccgg
      901 atgacacgcc tcgtatccat cctgcaggcg caccccgacg gcgtccgtac ggctgacgtt
      961 gccgagcggg tcgggatgtc ggtgcgaacc gtgtaccgcg acctccgcgc catcgacgag
     1021 gagatcggcg tcccggtctg ggcggacggg ggccgctggg ggatcgacca ggagaaggcg
     1081 ttcctgccgc cgctcaagct cacgcagagc gaggcgatgg cggtggtcct gtccgcccgg
     1141 ctgatggtcc gctacgcgga caagtacgac cccgacctgg cgtccgcctt cgagaagctc
     1201 gaacagggcc tgccgcccgc cctcgccgag cacgtcgagc ggacgctcga catcctgtcc
     1261 aaggcaccgc gcgacgaccg gttcatcgcg aacgtccggc tgctgaccaa ggcctgggcc
     1321 gagcggcgag tggtgacgat cgactacgag ccggcgctct acgaccgcgg cgcatcaccg
     1381 cgccgggcga ccgtccgacc ctatctcctc gagccgtcgc tccagacgca tgcgctgtac
     1441 ctgatgggct acgacgagga gcgtgcggcg ctgcggacgt tcaagatcga gcggatccgg
     1501 accgccgcgc tcacgcctcg gacgttcg
//
LOCUS       DATDDI010000407         1604 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_175385, whole genome shotgun sequence.
ACCESSION   DATDDI010000407 DATDDI010000000
VERSION     DATDDI010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175385"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VIU37_05870"
     CDS             complement(<1..570)
                     /locus_tag="VIU37_05870"
                     /inference="COORDINATES: protein motif:HMM:NF024688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HEY6013509.1"
                     /translation="MPILPTIQGPADLRGLNEVQLAQLALEIRETIIRTVAHTGGHLG
                     SSLGVVELTIALHRLLESPRDRIVWDTGHQAYPHKLLTGRLEAFDTLRQLDGVGGFPR
                     RSESPHDVFDGGHAGTGLSIAEGLAEARDLRHGLERIAVVVGDAALMSGLSLEALNDI
                     GHRQTQMLIVVNDNEMSISPTVGAFSKYLS"
     gene            758..>1604
                     /locus_tag="VIU37_05875"
     CDS             758..>1604
                     /locus_tag="VIU37_05875"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6013510.1"
                     /translation="MTNPAFDDLRRTLGGRVWIPDDRGYDAERATFNATVQRRPAVIV
                     RANSTDDVRAAVLAANELGLPIAVRGGGHNVAGHAVADGALVVDLRDLRTVVVDPDRR
                     TARVSGGAQWDDVDAAAWRHGLAVVGGTFGDTGVGGLTLGGGIGWLMGTQGLTCDNLI
                     RAEVVTATGELVVAGPDGDPELLWALRGGGGNFGIVTSFEFRVADPGPIHGGYLRYPI
                     GATAQVLERVAALSEAAPDPLQVFVMAGIHDDRVGGPSEARVGIGWTGDAEELRRLLR
                     PLREGM"
BASE COUNT          215 a          525 c          616 g          248 t
ORIGIN      
        1 cgagaggtac ttggagaacg cgccgacggt cgggctgatc gacatctcgt tgtcgttgac
       61 cacgatcagc atctgggtct ggcgatggcc gatgtcgttg agcgcctcga gcgacagccc
      121 gctcatcagg gcggcgtcgc cgacgacgac cgcgatccgt tcgaggccgt ggcgcaggtc
      181 gcgcgcctcc gcgaggccct cggcgatgga caaccccgtg cccgcgtgtc cgccgtcgaa
      241 cacgtcgtgg ggtgattccg accgtcgcgg gaagcctccc accccgtcga gctggcggag
      301 cgtgtcgaac gcctcgaggc ggcctgtcag cagcttgtga ggataggcct ggtggcccgt
      361 gtcccagacg atccggtcgc gcggcgattc gaggaggcgg tgcagcgcga tcgtcagctc
      421 cacgaccccg agcgacgatc cgaggtggcc gccggtgtgc gcgacggtcc ggatgatcgt
      481 ctcccggatc tcgagggcca gctgcgccag ctggacctcg ttgagtccgc gcaggtcggc
      541 agggccctgg atcgtcggga ggatcggcac ctgggaaggg ctcctggatc ggccggctgg
      601 ggaccgccgg gttcggtcgc gctgacgtct ggctgacggc acgtgtgatg ctcagggttc
      661 gcttacgatg cgtcgacgct gtcgacaggg actgagtgta aacctgatgc ctgcaggtcg
      721 ctcgtttccg tgggacagga catcgagggg cagacgaatg acgaatccgg cgttcgacga
      781 cctccggcgg acgctcggcg ggcgggtctg gattcccgac gaccgcggct atgacgcgga
      841 acgggcgacc ttcaacgcca cggtccagcg ccggccggcc gtcatcgtgc gtgccaactc
      901 caccgacgac gtgcgcgccg ccgtcctggc cgcgaacgag ctcgggctgc cgatcgcggt
      961 ccggggtggt ggccacaatg tcgccggcca tgcggtcgct gacggcgccc tcgtggtcga
     1021 cctgcgagac cttcggacgg tggtcgtgga cccggaccgg cgcacggcgc gggtgtccgg
     1081 tggcgcccag tgggacgacg tggacgcggc cgcctggagg cacggcctcg cggtggtcgg
     1141 cgggaccttc ggcgacaccg gtgtcggcgg gctcacgctg ggcggcggca tcggctggct
     1201 gatggggacg cagggcctga cctgcgacaa cctcatccgg gccgaggtcg tgacggcgac
     1261 gggcgagctg gtcgtcgccg gacccgacgg cgaccccgag ctgctgtggg cgctgcgcgg
     1321 cggcgggggg aacttcggga tcgtcacgtc gttcgagttt cgggtcgcgg atccgggacc
     1381 gatccacggt gggtacctcc gctacccgat cggtgccacg gcccaggtcc tggaacgcgt
     1441 cgcggcgctg tccgaggcgg caccggatcc cctccaggtg ttcgtcatgg caggaatcca
     1501 cgacgatcgc gtcgggggcc cgtccgaggc gcgggtcggg atcggctgga ccggcgacgc
     1561 cgaagagctc cggcggctgc tccggccgtt gcgtgagggc atgc
//
LOCUS       DATDDI010000408         1789 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_425223, whole genome shotgun sequence.
ACCESSION   DATDDI010000408 DATDDI010000000
VERSION     DATDDI010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425223"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VIU37_05880"
     CDS             complement(<1..742)
                     /locus_tag="VIU37_05880"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6013511.1"
                     /translation="MTTTDRPGGPTAPAQDDVRPGLAERALAQRVRDVPPSGIRRFFD
                     ILATMDDVISLGVGEPDFDTPRVIVEAGVESLREGRTHYTSNFGTLELRRALSTHLAA
                     RYGVNYDPQTEILITVGASEAVDLALRATCDPGDEVILHEPSYVSYVPAIVFAGGVVR
                     HVATRFEDDFALDPARVEEAITPRTKALFLGYPCNPTGAVLPSESQEALAGIAERHDL
                     VVYSDEIYDRLAYGTYRHRAFSALPGMRE"
     gene            complement(831..1619)
                     /locus_tag="VIU37_05885"
     CDS             complement(831..1619)
                     /locus_tag="VIU37_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013512.1"
                     /translation="MFRTLVRLALLGAIVSAAVAAVRGLDRWRSSWGVDPADVDRMLP
                     GDDLVPDPSHTETRGIDIGAPPSAVWPWLVQMGYERAGWYSYDQLDMKGRSADTILPD
                     LQSIKVGDILPTFPGGGFEVRVVDDGRALAVYTDTAITTAQAAAFAERQATVPLGLRA
                     SGTFMRSTPPDFAASWAFVLDPLPGGRTRLIERVRVWYGAGTPLSGVATPVFGFGVFL
                     MTRRQMLGIRDRAERAGRASVATVAPAPVEAVPAVDPEEAIAAS"
BASE COUNT          253 a          655 c          657 g          224 t
ORIGIN      
        1 gctcgcgcat gcccggcagc gcgctgaacg cccggtgccg gtacgtgcca tacgcgaggc
       61 ggtcgtagat ctcgtcgctg tagacgacga ggtcgtggcg ctcggcgatg ccggcgagag
      121 cctcctggct ctcggacggc aggaccgcac ccgtcgggtt gcacgggtag ccgaggaaca
      181 gcgccttcgt ccgcggcgtg atcgcctcct ccacccgggc cgggtcgagc gcgaaatcgt
      241 cctcgaaccg ggtcgccacg tggcgcacca cgccgcccgc gaacacgatc gccggaacgt
      301 acgacacgta ggacggttcg tgcaggatca cctcgtcgcc cggatcgcag gtcgcccgga
      361 gggcgagatc gacggcctcc gaggcgccga cggtgatcag gatctcggtc tgcgggtcgt
      421 agttgacgcc gtagcgcgcg gccaggtggg tcgacaacgc ccggcgcagc tcgagcgtgc
      481 cgaagttgct cgtgtagtgc gtccggccct cgcgcaggct ctcgacgccg gcctcgacga
      541 tgacccgcgg ggtgtcgaag tccggctccc ccaccccgag gctgatgaca tcgtccatcg
      601 tcgccaggat gtcgaagaag cggcggatgc ccgacggcgg cacgtcgcgg acgcgttgcg
      661 cgagggcacg ttcggcgagc ccggggcgca cgtcgtcctg agcgggagcg gtcggcccgc
      721 cgggccggtc ggtcgtcgtc acccgccaag cctagagcat cggcccggcc gtgcggctcg
      781 aggcgtcgac ggcgtcgcgc caggcaggcg cgggaagcgg cggccgcccg tcaggacgcc
      841 gcgatcgcct cctcggggtc caccgccggc accgcctcga ccggtgcggg ggccacggtg
      901 gccacgctcg cgcgtccggc ccgttccgcg cggtcgcgga tcccgagcat ctgccgtcgc
      961 gtcatcagga agacgccgaa cccgaacacc ggcgtcgcga cgccggacaa cggcgtgccc
     1021 gccccatacc agacccggac gcgttcgatg agccgtgtcc gtccgccggg caacgggtcg
     1081 agcacgaacg cccagctcgc ggcgaagtcc ggcggcgtgg accgcatgaa cgtgccggag
     1141 gcccgcagcc cgagcgggac cgtcgcctgg cgttcggcga aggccgcggc ctgggccgtc
     1201 gtgatcgccg tgtcggtgta gaccgcgagc gctcgcccgt cgtccacgac acgcacctcg
     1261 aagccgccgc ccgggaacgt cgggaggatg tcgccgacct tgatcgactg caggtccggg
     1321 aggatcgtgt ccgcgctgcg gcccttcatg tcgagctggt cgtagctgta ccagccggcc
     1381 cgttcgtagc ccatctggac gagccacggc cagaccgcgg acggcggcgc gccgatgtcg
     1441 atgccgcgcg tctccgtgtg cgacgggtcc ggcaccaggt cgtcaccggg cagcatccga
     1501 tcgacgtcgg ccgggtccac gccccagctc gaccgccagc ggtcgaggcc acgaaccgcg
     1561 gcaaccgccg ccgagacgat cgccccgagc agcgcgagcc ggaccagggt tctgaacatg
     1621 ggtcacctcc agaaggacca tcgtcgaccg cgatgggcgc ccggagcaag ggccggacgg
     1681 accgaagccg ctacgcggcg cgtgccccgg gcgacggcgc ggcgggatcc gcggcccgtg
     1741 ccaggtccgc cggttcctgc gatcgccacg gggcgccggc cgtgatggc
//
LOCUS       DATDDI010000409         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_196319, whole genome shotgun sequence.
ACCESSION   DATDDI010000409 DATDDI010000000
VERSION     DATDDI010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196319"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1032)
                     /locus_tag="VIU37_05890"
     CDS             complement(<1..1032)
                     /locus_tag="VIU37_05890"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEY6013513.1"
                     /translation="MFERLGSLTFKFRFVILVAWSAAAIAALAFAPSLAKVGSTDQSS
                     FLPPATESVQARVALERAFPREVSAGSATITFSRESGLTDADRAYIAETAAWITGPDA
                     PTDLREIVSSVQTPVSDPELESMMRSTDGQLELMTVNLTVNPLAGGDRAVEALRAHFG
                     QSLPIGMQAHVTGSAGISVDYMSAILRGTDSTLLVTIVLVVIILLLVYRAPLAALVPL
                     ATIGVAYLVSRGVLGYLAEAGWKISSLLDTFVVVLVFGVGTDYTIFLISRYREEVSKG
                     DWHAASRTTVKRIGAVITASAATVIVGLGSMAFGEFGMIQTTGPALAIVIFVTLLVGL
                     TLAPALLGIF"
     gene            complement(1233..>1739)
                     /locus_tag="VIU37_05895"
     CDS             complement(1233..>1739)
                     /locus_tag="VIU37_05895"
                     /inference="COORDINATES: protein motif:HMM:NF042524.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Chromate resistance protein ChrB"
                     /protein_id="HEY6013514.1"
                     /translation="TYVWRQLRQLGAVYLQQAVAVLPDRPELRAGLDQLGARIRAGGG
                     EVSLLETASPSASWEADLVGRFNLARDAEYDEIIESVERFEDEIRRETRKKRFMFAEL
                     EESETDWKKLRRWFARLTERDFFGAAGRADAEAVLARGRSLLDEFTAEVYRHEGLDAD
                     APADIARR"
BASE COUNT          271 a          605 c          632 g          231 t
ORIGIN      
        1 gaagatcccg agcagggcgg gcgcgagggt cagccccacg aggagcgtga cgaagatgac
       61 gatcgccagg gccggtccgg tcgtctggat catcccgaac tcgccgaagg ccatggagcc
      121 gagcccgacg atgaccgtcg ccgcgctcgc ggtgatgacg gcgccgatcc gcttgacggt
      181 cgttcgcgac gcagcgtgcc agtcgccctt gctgacctcc tcccggtagc gcgagatcag
      241 gaagatcgtg tagtcggtgc ccacgccgaa gacgaggacc acgacgaagg tgtccagcag
      301 cgaggagatc ttccagccgg cttcggccag gtagccgagc acgccacgcg agaccaggta
      361 ggcgacgccg atcgtggcga gcgggacgag cgcggcgagg ggcgcgcggt agaccaggag
      421 caggatgatg acgaccagca cgatcgtcac cagcagcgtg ctgtcggtgc cgcgcaggat
      481 cgcgctcatg tagtcgacgc tgatcccggc cgagccggtc acgtgcgcct gcatcccgat
      541 gggaagcgat tgcccgaaat gggcgcgcag cgcttccacg gcccggtcgc cgccggccaa
      601 cgggttcacg gtcaggttga cggtcatcag ctcgagctgg ccgtccgtgc tgcgcatcat
      661 cgactcgagc tccgggtccg agacgggcgt ctggacgctg gacacgatct cgcgcaggtc
      721 cgtcggggcg tccggaccgg tgatccaggc cgccgtttcg gcgatgtacg cccggtcggc
      781 gtcggtcagg cccgattcgc gggagaaggt gatcgtcgcc gagccggccg agacctcgcg
      841 tggaaaggcg cgttcgagcg ccacgcgcgc ctggacggac tcggtcgccg gcggcaggaa
      901 cgagctctgg tcggtggagc cgaccttggc cagggagggc gcgaacgcga gggcggcgat
      961 cgcggcggcc gaccaggcca cgaggatgac gaagcggaac ttgaaggtca gcgaacccag
     1021 gcgctcgaac atgccacgct cccaccgtgt cctgaggccg ccggacgccc ggatgcgccg
     1081 cgaccgcgga ggggacgccg ccgacaggcg gccgccacca ctgtctgccg ggctccgatg
     1141 cccgggcgtc tgtcgaacgt cccgaacagg ggggccgttc gacgcgaatc aaggcggccc
     1201 cgactgcgcc ggcgggcgat cggcgccgcc gatcagcgcc gggcgatgtc cgccggcgcg
     1261 tccgcgtcga gtccttcgtg ccggtacacc tcggccgtga actcgtcgag aaggctgcga
     1321 ccgcgcgcca gcaccgcctc ggcgtccgcg cggcccgcgg ccccgaagaa gtcgcgttcg
     1381 gtcaggcgcg cgaaccagcg ccggagcttc ttccagtcgg tctcgctctc ctcgagctcg
     1441 gcgaacatga accgcttctt gcgggtctcg cgccggatct cgtcctcgaa ccgctcgacg
     1501 ctttcgatga tctcgtcgta ctcggcatcc cgcgcgaggt tgaagcggcc gacgaggtcc
     1561 gcctcccagc ttgccgacgg ggacgccgtc tccagcagcg acacctcgcc gcccccggcc
     1621 cggatccggg cgccaagctg gtcgagtccg gcccggagct ccggccggtc ggggaggacc
     1681 gcgaccgcct gctggaggta gaccgcgccc agctggcgga gctgccgcca gacgtaggt
//
LOCUS       DATDDI010000410         1524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_92092, whole genome shotgun sequence.
ACCESSION   DATDDI010000410 DATDDI010000000
VERSION     DATDDI010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92092"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..386
                     /locus_tag="VIU37_05900"
     CDS             <1..386
                     /locus_tag="VIU37_05900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013515.1"
                     /translation="NRTTRDGLAEIVAQGVEQGMGAAELGRAIQDWSGWDEYRAEMIA
                     RTETGMAFNETALATYRDSGVEQVQVTDGDDDEICLPWHDWTGPIDEAPEPLGHPNCT
                     RDIVPVVGYTAEDYQTAADMLGGLS"
     gene            383..>1524
                     /locus_tag="VIU37_05905"
     CDS             383..>1524
                     /locus_tag="VIU37_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013516.1"
                     /translation="MTLAEKAPREFTDTSREKMAGRGVAMPDGSYPIPDKDALRRAIQ
                     SYGRAKDPEAVKRHIIKRAKALGATAMLPEDWGGAPAKGSLAAQHSAQASDILEDLYC
                     LIDCESDEPNHVAMLQQAASLVLRFLGEEHGEIGRPGDDAPMANGKARIASKVWHDEL
                     KAEPMDGRRLERWLSGDIPRRILVLPFGGPLPGGKAGLDLDGEYFDEETDIYGPYPAL
                     RKTRERLVDWHHDNDPTGIMKGAILGRIVMDENPEDEGVWADFWANAGEQRRALIARL
                     EKAGVPLYGSSQAIRGAVRKASDGHIELWPLVRHTITTSPQNTYAVVPTIKSVLAADI
                     PSDALTMAAVKAALVESDAPLTLGGTLADGGSSFRQSGDRSGKAGRV"
BASE COUNT          259 a          552 c          523 g          190 t
ORIGIN      
        1 tcaaccgcac gacccgcgac ggcctggccg agatcgtggc gcagggcgtc gagcagggca
       61 tgggcgcagc cgagctcggg cgggccatcc aagattggtc gggctgggac gagtaccggg
      121 ccgagatgat cgcccgcacc gagacgggca tggcgttcaa cgagacggcg ctcgcgacgt
      181 accgggactc gggcgtcgag caggtccaag tcacggacgg cgatgacgac gagatctgcc
      241 tgccttggca cgactggacc ggccccatcg acgaggcgcc cgagccgctc ggccatccga
      301 actgcacccg cgacatcgtg cccgtcgtcg gctacacggc cgaggactac cagaccgctg
      361 ccgacatgct gggaggcctg tcatgaccct cgccgagaag gcaccccgcg agttcaccga
      421 cacctcgcgc gagaagatgg ccggccgcgg cgtcgcgatg cccgacggct cgtatccgat
      481 ccccgacaaa gacgcgctcc ggcgggccat ccagagctac ggccgcgcca aggaccccga
      541 ggccgtcaag cgccacatca tcaagcgggc gaaggcgctc ggcgcgaccg cgatgctgcc
      601 cgaggactgg ggcggcgctc cggcgaaggg ctcgctcgcg gcgcagcact cggcccaggc
      661 gtccgacatc ctcgaagacc tctactgcct catcgactgc gagagcgacg agccgaacca
      721 cgtcgcgatg ctccagcagg cggcctcgct cgtcctgcgc ttcctcggcg aagagcatgg
      781 cgagatcggc cgaccgggcg acgacgcgcc gatggcgaac ggcaaggccc gcatcgcgtc
      841 gaaggtctgg cacgacgagc tgaaggccga gccgatggac ggccggcgcc tcgagcgatg
      901 gctgtcgggc gacatcccgc gccggatcct cgtcctgccg ttcggcgggc cgctgccggg
      961 cggcaaggcc gggctcgacc tcgacggcga gtacttcgac gaggagacgg acatctacgg
     1021 gccgtacccg gcgctccgca agacgcgcga gcggctcgtc gactggcacc atgacaacga
     1081 cccgaccggg atcatgaagg gcgccatcct cgggcgcatc gtcatggacg agaaccccga
     1141 ggatgagggc gtctgggccg acttctgggc gaacgcgggc gagcagcgtc gggcgctcat
     1201 cgcccggctc gagaaggccg gcgtgccgct gtacggctcg tcccaggcca tccgcggcgc
     1261 cgtccgcaag gcatccgacg gccatatcga gctctggccg ctcgtgcgcc acacgatcac
     1321 gacctcaccc cagaacacct acgcggtcgt tcccaccatc aagtcggtcc tcgcggccga
     1381 catcccctcc gacgctctca cgatggcggc cgtcaaggcg gccctcgtgg agtcagacgc
     1441 acccctgacc ttgggcggga ccttggctga cggcggcagt tccttccgtc agtccggcga
     1501 tcgctccggc aaagcgggcc gcgt
//
LOCUS       DATDDI010000411         2257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_508415, whole genome shotgun sequence.
ACCESSION   DATDDI010000411 DATDDI010000000
VERSION     DATDDI010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508415"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..733)
                     /locus_tag="VIU37_05910"
     CDS             complement(<1..733)
                     /locus_tag="VIU37_05910"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY6013517.1"
                     /translation="MSPRRPTAAELEQIPAPDLDIVHDPGPAAAARRVETLQEDVAAE
                     PLAAPSGGAIRVGTASWTDPTMTARGVFYPDRADTAEERLGYYASRFPLVEVDATYYA
                     LPSARTAELWVARTLPEFTFDIKAHALMTGQPTETRRLPKELRAALPEELAAKPRIYA
                     KDLPGELRDQVWTWFIDGLEPLREAGQLGSILLQYPRWFFTSSENRDAIEEATGRLRD
                     AGLVGAVEFRSASWLNDKNIERTLRF"
     gene            935..>2257
                     /locus_tag="VIU37_05915"
     CDS             935..>2257
                     /locus_tag="VIU37_05915"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEY6013518.1"
                     /translation="MRRHLRLPSLAIVAVLLVAACSSTTASSAPSAAGSVAASAPAAS
                     QAEASPSAAPPATTPEPAADCARTDDASAMQMWERSGGNKGMVDLLVCAWNEANPGKK
                     INLTYIPHAEMVGKIAQGIASGDVPDLMGMDLIYAPQFENANQLTDVTDQISAWPELK
                     TASPGHMTVATFNGRLFGVPLYADVSALFYNKTLFKQAGLDPNKPPTSLPQLREYADK
                     ITALGGDIKGYYLPGNCAGCNIFTVGPLMWASGATIEAGKCGDEPLVGDGVKQVLQFA
                     RDIVKAGDVPDSARSETGDTFAEQFGTGKIGMMGTGNFNIVLARDQMKGHEFDFGISL
                     LPGMNDGSSASFIGGDIVVIPKGSKRVDDAVAFEKFLLSDNTQIEVYAKNLNLTTRSD
                     MADNKYFKAEPLVQDVAKALAVGRTPYTLTFFEQINSPQGPWLQMLQRA"
BASE COUNT          383 a          776 c          764 g          334 t
ORIGIN      
        1 ggaagcgcag cgttcgttcg atgttcttgt cgttgagcca gctggcgctc cggaattcga
       61 ccgcgccgac gaggcccgca tcccgaagac gaccggtcgc ctcctcgatc gcgtcccggt
      121 tctccgagct ggtgaagaac cagcgcgggt actggagcag gatcgagccg agctggccgg
      181 cctcgcgcag cggctcgagc ccgtcgatga accaggtcca gacctggtcc cggagttcgc
      241 cgggcaggtc cttggcgtag atccggggct tggccgcgag ctcctccggc agggcggcgc
      301 gcagctcctt gggcagccgc ctggtctcgg tcggctgacc ggtcatcagg gcgtgggcct
      361 tgatgtcgaa ggtgaattca ggcagcgtcc gggcgaccca cagctcggcg gtccgcgcgg
      421 acggcagcgc gtagtaggtg gcatcgacct ccacgagtgg gaaccggctc gcgtagtacc
      481 cgaggcgctc ctcggccgtg tcggcccggt ccgggtagaa gacacccctg gcggtcatgg
      541 tcgggtcggt ccaggacgcg gtcccgacgc ggatcgcgcc gccggacgga gccgccagcg
      601 gctccgcggc gacgtcctcc tggagcgtct cgacccgccg ggcggcagca gccggaccgg
      661 gatcgtggac gatgtcgagg tcgggagccg ggatctgttc gagctcggcc gcggtcgggc
      721 gtcgtggact caccgcgcca gcctacccag aagtcggcac gaaggcacgc cccccgtcca
      781 ggagccggcg tggcaggctc gccgcgaacc ggtcgcgact tatgaaatcg aatgtatgca
      841 ctcgattgcg gtcgtggtag tctgacgccg cccagggtcg cgggcggcag gatccgcccg
      901 cggcaacccg aggctggatt gagaggagca agggatgagg agacatctca ggttgcccag
      961 cctcgcgatc gtggccgtcc tgctcgtcgc cgcgtgcagc tcgacgacgg cgtcgtccgc
     1021 accgagcgct gccgggtcgg tggcggcctc cgcaccggcg gccagccagg cggaagcgtc
     1081 gcccagtgcc gcgccgccgg ccaccacccc ggagcccgcg gcggactgcg cccggaccga
     1141 cgacgcctcg gcgatgcaga tgtgggagcg atccggcggg aacaagggga tggtcgatct
     1201 cctggtgtgc gcctggaacg aggccaaccc cggcaagaag atcaacctga cctacatccc
     1261 gcatgccgag atggtcggga agatcgccca ggggatcgcc tcgggtgacg tgccggacct
     1321 gatgggcatg gacctgatct acgccccgca gttcgagaac gcgaaccagc tgaccgacgt
     1381 caccgatcag atctcggcct ggccggagct caagacggcc agcccgggcc acatgacggt
     1441 cgccacgttc aacggccggc tcttcggcgt cccgctgtac gcggacgtgt cggccctctt
     1501 ctacaacaag accctgttca agcaggccgg ccttgatccg aacaagccgc cgacgagcct
     1561 cccgcagctg cgcgagtacg ccgacaagat caccgcgctg ggcggcgaca tcaagggcta
     1621 ctacctgccc ggcaactgcg ccggctgcaa catcttcacg gtcggcccgc tgatgtgggc
     1681 gtccggcgcg accatcgaag ccggcaagtg cggcgacgag ccgctcgtcg gcgacggggt
     1741 caagcaggtg ctccagttcg cccgcgacat cgtcaaggcc ggtgacgtgc ccgatagcgc
     1801 ccgctccgag accggcgaca ccttcgccga gcagttcggc acgggcaaga tcggcatgat
     1861 gggaaccggc aacttcaata tcgtcctcgc ccgcgaccag atgaagggcc acgagttcga
     1921 tttcgggatc agcctcctgc ccgggatgaa cgacggctct tcggcttcat tcatcggcgg
     1981 cgacatcgtg gtcatcccca agggcagcaa gcgtgtcgac gatgcggtcg cgttcgagaa
     2041 gttcctgctt tcggacaata cccagatcga ggtctacgcc aagaatctca acctgaccac
     2101 ccgcagcgac atggccgaca acaagtactt caaggccgaa ccgctcgtcc aggatgtcgc
     2161 caaggcgctc gcggtcgggc gaaccccgta caccctcacc ttcttcgagc agatcaactc
     2221 cccacagggc ccctggctcc agatgctcca gcgggcg
//
LOCUS       DATDDI010000412         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_633333, whole genome shotgun sequence.
ACCESSION   DATDDI010000412 DATDDI010000000
VERSION     DATDDI010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633333"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VIU37_05920"
     CDS             <1..399
                     /locus_tag="VIU37_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013519.1"
                     /translation="VLFAPVGAVGMAVLPPIDPLVSPMASALAGRAALAGVALLGAGL
                     APAAHGSRVDGVAVGVALGVGVPVASVTSALIGTFIAGSALHGFDEGGLLAGQVLRGG
                     VGGAVALSPLIALAATTWVVLVRRWSGPPS"
     gene            complement(409..>1750)
                     /locus_tag="VIU37_05925"
     CDS             complement(409..>1750)
                     /locus_tag="VIU37_05925"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEY6013520.1"
                     /translation="GIVTGIGRIERTTCVVVANDATVKGGTYYPLTVKKHLRAQEIAL
                     ENRLPCVYLVDSGGAFLPLQADVFPDRDHFGRIFYNQARMSAAGIPQVALVMGSCTAG
                     GAYVPAMSDETVIVRGTGTIFLGGPPLVKAATGEDVTPEDLGGAEVHTRRSGVADHEA
                     LDDEHALAIGRSIVRNLSRRSPEPPWERRDPEPPAIPAEGDDRQASLYAAVSLDPRRP
                     VPVRELIARLVDGSRFHDFKPLYGETLVCGFAHVGGYPVGILANDGILFSQSALKGTH
                     FIELACQRRIPLVFLQNISGFMVGREYEEAGIAKDGAKLVMAVAGAEVPKFTVLIGGS
                     FGAGNYAMAGRAYQPRFLWSWPNARISVMGGPQAARVLSTVRGGFADDEERDAFEAPI
                     LDTYEREGSPYFATARLWDDGVIDPLDTRRVLTMGIEAALHAPIPETRFGVFRM"
BASE COUNT          227 a          609 c          644 g          270 t
ORIGIN      
        1 gtgttgttcg cgccggtcgg ggcggtcggc atggcggtcc tgccgcccat cgatccgctg
       61 gtcagcccca tggcgtccgc acttgccggg cgggccgccc tggcgggtgt ggccctcctg
      121 ggcgcaggtc tggcgccggc agcgcacggc tcgcgcgtgg atggcgtcgc cgtcggcgtg
      181 gcgctcgggg tcggcgtccc ggtggcgtca gtcacctccg ccctgatcgg gacgttcatc
      241 gcaggttcgg cccttcacgg gttcgatgaa gggggactgc tcgcgggaca ggtcctgcgc
      301 ggcggggtcg gcggggcggt cgcgttgtcg ccgttgatcg cgcttgccgc cacgacctgg
      361 gtcgtgctgg ttcgacgatg gagcggcccg ccgagctgag gttgccggct acatccggaa
      421 gacgccgaac cgcgtctccg ggatcggcgc gtggagcgcc gcctcgatgc ccatggtcag
      481 cacgcggcgg gtgtccagcg ggtcgatgac gccgtcgtcc cacagcctgg ccgtggcgaa
      541 gtagggcgag ccctcgcgct cgtaggtgtc gaggatgggc gcctcgaacg cgtcccgttc
      601 ctcgtcgtcg gcgaagccgc cgcggaccgt cgacaggacg cgcgcggcct ggggtccgcc
      661 catcaccgag atccgtgcgt tcggccagga ccacaggaac cgtggctggt aggcgcgccc
      721 ggccatcgcg tagttgcccg ccccgaacga gccaccgatc aggacggtga acttggggac
      781 ctccgcgccc gccaccgcca tgaccagctt cgcgccgtcc ttggcgatcc cggcctcctc
      841 gtattcccgc ccgaccatga acccgctgat gttctggagg aagaccagcg ggatccggcg
      901 ctggcaggcg agctcgatga agtgggtgcc cttgagcgcc gactggctga acaggatgcc
      961 gtcgttggcg aggatcccaa ccgggtagcc accgacgtgc gcgaagccgc acacgagcgt
     1021 ctcgccgtac agcggcttga agtcgtggaa ccgcgaaccg tcgacgagcc gcgcaatcag
     1081 ttcgcggacc gggaccgggc ggcgcgggtc cagcgagacc gcggcgtaca gggaggcctg
     1141 ccggtcgtcg ccctcggctg ggattgccgg cggctccggg tcgcgacgct cccacggcgg
     1201 ctcggggctt cgtcggctca ggttgcggac gatcgaccgg ccgatcgcca gggcgtgctc
     1261 gtcgtcgagc gcctcgtggt ccgcgacgcc ggatcggcgg gtgtggacct ccgccccgcc
     1321 gaggtcctcg ggggtcacgt cctcacccgt ggcggccttc accagcggcg gtccgcccag
     1381 gaagatggtg ccggtcccgc gaacgatgac ggtctcgtcg ctcatcgccg ggacatacgc
     1441 gccacccgcg gtgcacgagc ccatgacgag cgcgacctgg gggatgccgg ccgccgacat
     1501 gcgcgcctgg ttgtagaaga tccggccgaa gtgatcgcgg tcggggaaga cgtccgcctg
     1561 cagcggcagg aaggcgccgc ccgaatccac caggtagacg cacggcaacc ggttctcgag
     1621 cgcgatctcc tgcgcgcgca ggtgcttctt cacggtcagc gggtagtagg tcccgccctt
     1681 gaccgtggcg tcgttggcga cgaccacgca ggtcgttctc tcgatccggc cgatcccggt
     1741 cacgatgccc
//
LOCUS       DATDDI010000413         2324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_92150, whole genome shotgun sequence.
ACCESSION   DATDDI010000413 DATDDI010000000
VERSION     DATDDI010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92150"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..920
                     /locus_tag="VIU37_05930"
     CDS             <1..920
                     /locus_tag="VIU37_05930"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HEY6013521.1"
                     /translation="LGEQAFNGMPNNPGGVFGTAVATMGMLMTTAYVLAMDTFGPITD
                     NAGGVAEFSRSEAGAREITDRLDAVGNTTKALTKGYAIASASLAAFLLFNAYIDKVNL
                     IQHNRGGVALTAVNLADVGVFVAALIGAMLVYFFSSLAIRAVGKTAQSIIFEVRRQFR
                     EMPGIMDYSQRPDYARVVDITTRAALREMVAPGLVAVATPIIVGLLLGYQAVAGMLMV
                     GTIAGVLLATVLNNGGGAWDNAKKYIESGHLTDENGVVLGKKTPAHAAAVVGDTVGDP
                     FKDTAGPSLHVLVKLLATITLVLAPLFIR"
     gene            950..1777
                     /gene="uppP"
                     /locus_tag="VIU37_05935"
     CDS             950..1777
                     /gene="uppP"
                     /locus_tag="VIU37_05935"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HEY6013522.1"
                     /translation="MDTALQALVMGIVQGLTEFLPVSSSGHLIIVPFLFGWNDPFIDS
                     LAFSVMLHIGTLLALLIYFWADWLRLIPAGFAAIRDRSFRGDPDRRLAWLLLASTIPA
                     AIVGFLFNDIIETNVREVGLVAVTLVVGGGILWLADRRGSRAKGVADVSFPVAVGIGV
                     AQAVALVPGISRSGISISAARFAGLDREAAARFSFLMATPVTAGAAVFELRKLVTGEA
                     GVDVSLEPLVVGMVAAFVSGMLAIGVLLRYVRTRSMNVFVWYRLVLAGIVLVAWLAR"
     gene            1793..2263
                     /gene="argR"
                     /locus_tag="VIU37_05940"
     CDS             1793..2263
                     /gene="argR"
                     /locus_tag="VIU37_05940"
                     /inference="COORDINATES: protein motif:HMM:TIGR01529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006525 - arginine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEY6013523.1"
                     /translation="MEVMKQLRQRAIRDFVEQRPIRTQQELAAALRERGFRTTQATIS
                     RDVAELGLIKVTREGMAAYALPPRLIEAETSGEDRLRKLLADLPVEVHDAGLLLVIRT
                     LPGSAHAIAAALDRARWPEVAGSIAGDDTLFVAFPDRGSLQRIKRRLLGLAGAS"
BASE COUNT          306 a          856 c          782 g          380 t
ORIGIN      
        1 ggctcggcga gcaggccttc aacgggatgc cgaacaaccc cggcggcgtg ttcgggacgg
       61 ccgtcgcgac catgggcatg ctcatgacga ccgcctacgt cctcgcgatg gacaccttcg
      121 gcccgatcac cgacaacgcc ggcggcgtcg cggagttcag ccgctcggag gccggggccc
      181 gtgagatcac cgaccgcctc gacgcggtcg gcaacaccac gaaggcgctc accaagggct
      241 atgcgatcgc gtccgcgtcg ctggccgcgt tcctgctgtt caacgcctac atcgacaagg
      301 tcaacctgat ccagcacaac cgcggtggcg tcgcgctgac cgccgtcaac ctggccgacg
      361 tcggggtgtt cgtcgcggcc ctcatcggcg cgatgctcgt gtacttcttc agcagcctcg
      421 ccatccgggc cgtcggcaag accgcccagt cgatcatctt cgaggtccgg cgccagttcc
      481 gggagatgcc cgggatcatg gattacagcc agcgcccgga ctacgcccgg gtcgtcgaca
      541 tcacgacccg cgcggcgctc cgcgagatgg tcgcgcccgg cctcgtcgcc gtcgccacgc
      601 cgatcatcgt cggcctcctg ctcggctacc aggcggtggc cggcatgctc atggtcggca
      661 cgatcgccgg cgtcctcctc gccaccgtcc tcaacaacgg cggtggcgcc tgggacaacg
      721 ccaagaagta catcgagtcc ggacacctga ccgacgagaa cggcgtggtg ctcggcaaga
      781 agaccccggc gcacgccgcg gcggtcgtgg gcgacaccgt cggcgacccg ttcaaggaca
      841 ccgccggccc gtcgctccac gtcctcgtca agctcctcgc gacgatcacc ctggtcctcg
      901 ccccgctgtt catccggtag ccggcctgtc gggctgctga ggcccagccg tggataccgc
      961 tctccaggcc ctcgtgatgg ggatcgtgca gggactcacc gagttcctgc cggtctcctc
     1021 gtccgggcac ctgatcatcg tgccgttcct gttcggctgg aacgacccgt tcatcgattc
     1081 gctggcgttc agcgtgatgc tgcacatcgg cacgctgctc gccctgctga tctacttctg
     1141 ggcggactgg ctgcggctca tccctgccgg gttcgcggcc atccgcgatc gctcgttccg
     1201 tggcgacccc gaccggcgcc tggcctggct cctgctcgct tcgacgatcc cggccgccat
     1261 cgtcgggttc ctgttcaacg acatcatcga aacgaacgtc cgcgaggtgg gactggtcgc
     1321 cgtgacgctc gtggtcggcg gcgggatcct gtggctcgcc gaccgccgcg ggagccgggc
     1381 caagggcgtc gccgacgtct cgttcccggt cgcggtcggg atcggcgtgg cgcaggccgt
     1441 ggcgctcgtc cccgggatca gccggtccgg catctcgatc tcggccgccc ggttcgcggg
     1501 cctcgaccgc gaggccgctg cccggttctc cttcctgatg gcgacgccgg tcaccgccgg
     1561 cgcggccgtg ttcgagctgc gcaagctcgt gaccggggaa gccggcgtcg acgtcagcct
     1621 cgaacccctc gtcgtcggca tggtggcggc gttcgtctcc ggcatgctgg ccatcggcgt
     1681 gctgctccgc tacgtccgga cccgctcgat gaacgtcttc gtctggtacc ggctggtgct
     1741 ggccggcatc gtcctggttg cctggctggc ccgctagccg aggagtccgt cgatggaggt
     1801 catgaagcag ctccgccagc gggccatccg cgacttcgtc gaacagcggc cgatccggac
     1861 gcagcaggag ctggcagccg cactccgcga acgcgggttc cggaccacgc aggcgacgat
     1921 ctcgcgcgac gtcgcggagc tgggcctgat caaggtcacc cgtgagggca tggcggccta
     1981 cgcgctgcca ccccggctca tcgaggccga gacgtcgggc gaggaccggc tgcgcaagct
     2041 cctggcggac ctgccggtcg aagtccacga cgcggggctg ctgctcgtca tccggaccct
     2101 gccggggtcg gcgcatgcga tcgcggcggc actcgaccgg gctcgctggc ccgaggtcgc
     2161 cggctcgatc gccggcgacg acacgctgtt cgtcgcgttt ccggaccgtg ggtcgttgca
     2221 gcgcatcaag cggcggctgc tcggcctggc cggcgcgagc tgagccctcg ccggaccgcc
     2281 cggcgccacg gccggaggct ttgacaccca cccgtcgcac ggct
//
LOCUS       DATDDI010000414         1500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_237981, whole genome shotgun sequence.
ACCESSION   DATDDI010000414 DATDDI010000000
VERSION     DATDDI010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237981"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VIU37_05945"
     CDS             <1..291
                     /locus_tag="VIU37_05945"
                     /inference="COORDINATES: protein motif:HMM:NF020253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HEY6013524.1"
                     /translation="GRDVLEREKSEGPRRKLVGFEMVDRGIARHGYPVVDGKEEIGVV
                     TSGTHSPTLKKPIGLAYLPLDKSAQGTEFTIVIRGKEARARVVPTPFYKRAR"
     gene            complement(273..452)
                     /locus_tag="VIU37_05950"
     CDS             complement(273..452)
                     /locus_tag="VIU37_05950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013525.1"
                     /translation="MRTDLRNLDEYDITELFLRIFGDADRPYVALDLNVLMRLGVPVV
                     FVGLRHRRSFYLARL"
     gene            complement(513..1010)
                     /locus_tag="VIU37_05955"
     CDS             complement(513..1010)
                     /locus_tag="VIU37_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013526.1"
                     /translation="MTTRFGPRELDALQELASVGCGQAITALGKLAGRRFDMDVPEAW
                     VGAEPGAIASFLGGLGGDLVAVGVKLEGRLTGDLLLALPETDADGLARMLGFPPGADG
                     WTGMAESALMESGNIVGSAFVSAVAALVKERLLLSAIAVGIGVHQLRFVGKRLVDFDN
                     LAADG"
     gene            complement(1007..>1500)
                     /locus_tag="VIU37_05960"
     CDS             complement(1007..>1500)
                     /locus_tag="VIU37_05960"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEY6013527.1"
                     /translation="KRAVEALGGKLEIESAPGAGSLVTFRLPLTVAVQPVLLVRIGDE
                     VLGLPIAKVHGAAQVAMSRLDHSRGEPVLPYQGDLVPVYDLTRLLGFPGERSADERSV
                     VVAEGGDGRVGLAVDALLGQHEAVLKPLGAPLDQVPGLSAVTVLGNGRPVFILDVQRL
                     LAA"
BASE COUNT          275 a          507 c          526 g          192 t
ORIGIN      
        1 ggccgcgacg tcctggaacg tgaaaaatcg gaaggaccgc ggcggaagct cgtcggattc
       61 gagatggtcg accgcgggat cgcccgccac ggctacccgg ttgtcgacgg caaggaagag
      121 atcggcgtcg tcaccagcgg gacgcattcg ccgacattga aaaaaccgat cggactcgca
      181 tatcttccgc tcgacaaatc ggcccagggt accgagttca caatcgtcat ccgagggaaa
      241 gaagctcggg cacgtgtcgt cccaacacct ttctacaaac gggccagata gaaggagcgg
      301 cgatggcgaa gacccacgaa gacaacaggt acgccaagtc tcatgagtac attcaagtcg
      361 agggcgacgt agggacggtc ggcatcaccg aatatgcgca gaaagagctc ggtgatgtcg
      421 tattcgtcga ggttccgcag gtcggtacgc aactggagat gggagacgag ttcggaagca
      481 tcgaatcggt gaaggccgtt tcggagctgt tctcacccgt cagcggcgag gttgtcgaag
      541 tcaacgagac gcttgccgac aaaccggagc tggtgaacac cgatccctac ggcgatggcc
      601 gagaggagga gccgctcctt cacgagcgcc gccacggccg acacgaacgc gctccccacg
      661 atgttgcccg actccatgag cgcgctctcg gccatgccgg tccagccgtc cgcgccgggc
      721 gggaacccga gcatgcgcgc gagcccgtcc gcgtccgtct cggggagcgc gaggaggagg
      781 tcgccggtga gccgcccctc gagcttcacg ccgaccgcga cgaggtcgcc cccgagcccg
      841 ccgaggaacg aggcgatcgc cccgggctcg gccccgaccc acgcctcggg gacgtccatg
      901 tcgaaccggc gcccggcgag cttcccgagc gcggtgatgg cctggccgca gccgacggag
      961 gcgagctcct gcagcgcgtc cagctctcgc gggccgaagc gggtcgtcat gccgcgagga
     1021 gccgctggac gtcgaggatg aacaccggcc gcccgttgcc gagcacggtc acggcggaga
     1081 ggccagggac ctggtcgagc ggcgcgccga gcggcttcag caccgcctcg tgctgtccga
     1141 ggagcgcgtc cacggcgagg ccgacgcgcc cgtcgccgcc ctccgccacc acgacggagc
     1201 gctcgtcggc ggaccgctcg cccgggaacc cgagcagccg cgtgaggtcg tacaccggga
     1261 cgaggtcgcc ctggtacggg agcacgggct cgccgcggct gtggtcgagc cgcgacatcg
     1321 cgacctgcgc ggcgccgtgc accttggcga tggggagccc cagcacctcg tcgccgatcc
     1381 ggacgagcag caccggctgg accgcgacgg tgagcgggag gcggaaggtg acgagagagc
     1441 ccgcgccggg cgcgctctcg atctcgagct tcccgccgag cgcctcgacg gcgcgcttca
//
LOCUS       DATDDI010000415         1880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_508494, whole genome shotgun sequence.
ACCESSION   DATDDI010000415 DATDDI010000000
VERSION     DATDDI010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508494"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..725
                     /gene="atpH"
                     /locus_tag="VIU37_05965"
     CDS             174..725
                     /gene="atpH"
                     /locus_tag="VIU37_05965"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004402.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HEY6013528.1"
                     /translation="MSRPVAAARRYAEAAFEVALADGQLDRWQADLAQAAEILGRPDV
                     SPTVDNPAVPLAKRLEIVRQLLGTRISAQALRLVSLLVERGRANAMPKLSEDFNRLLN
                     AHRGVVEATVTSAVPLTADETAEIRSRVEAMAGSAVELRTEVDPGLLGGLMIQVRDRL
                     LDASIRGRLERLRDQLHAGTRTR"
     gene            744..>1880
                     /gene="atpA"
                     /locus_tag="VIU37_05970"
     CDS             744..>1880
                     /gene="atpA"
                     /locus_tag="VIU37_05970"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEY6013529.1"
                     /translation="MAIRSDEIISIIKSQIENFDGTTETRSVGTVVEVGDGIAQVYGL
                     DAALMSELLEFPGGVMGMALNLSEETVGAVILGDATAIKEGDTVKTTGRVVEVPVGQA
                     LIGRVVDPLGRPLDDKGQIETKKTRPVERIAPGVIVRQGVDTPVQTGIKAIDALIPIG
                     RGQRELIIGDRQTGKTAIAIDTIINNKDSDVICIYVAIGQRMSTVVQLKETLAENGAM
                     ENTIIVAAPADEAAPIKYIAPYAGCAMGEHFLYNGKAALCVYDDLTKHASAYRQMSLL
                     LRRPPGREAYPGDVFYLHSRLLERCAKLSKELGGGSMTGLPIIETKGNDISAYIPTNV
                     ISITDGQLFLQSDLFNANQRPAIDVGVSVSRVGGGAQVKAMRNVT"
BASE COUNT          318 a          693 c          618 g          251 t
ORIGIN      
        1 gccgccgaga tcgaggccga gaagcagaag gccatcgccg agctccgggg tgaggtcgcc
       61 gacctcgcgc tcgcggccgc cggccgcgtc gtggccgaca gcatgaccgg cgaccgccag
      121 cgcaagctcg tcgccgactt cctcgccgag cccaccggcg ggtcgaggaa ctgatgtccc
      181 gccccgtcgc cgcagcgcgt cgctacgcgg aggccgcctt cgaggtggcc ctcgctgacg
      241 gtcagctcga tcgctggcag gcggatctcg cccaggcggc cgagatcctc ggccggcccg
      301 acgtgtcgcc caccgtggac aaccccgccg tgccgctggc caagcggctc gagatcgtcc
      361 gacagctgct gggcacgcgg atctccgcgc aggccctgcg gctcgtcagc ctcctcgtgg
      421 agcgtggccg ggccaacgcc atgcccaagc tcagcgagga cttcaaccgc ctgctcaatg
      481 cacaccgcgg tgtggtggag gccacggtca ccagtgccgt gccgctcacc gcggacgaga
      541 ccgccgagat ccggagccgg gtcgaggcga tggccggctc ggccgtggag ctccgcacgg
      601 aggtcgatcc cggcctcctc ggcgggctca tgatccaggt ccgggaccgg ctcctcgacg
      661 cctcgattcg cggccgcctc gagcggctgc gtgaccagct ccatgcgggc acccgcaccc
      721 gctagcgccc gaacggagac gccatggcca tccggtcaga cgagatcatc agcatcatca
      781 agagccagat cgagaacttc gacggcacga ccgagacgcg gagcgtcggc acggtcgtcg
      841 aggtcggcga cggcatcgcg caggtctacg gcctggacgc cgccctgatg tccgagctgc
      901 tcgagttccc cggcggggtg atgggcatgg ccctcaacct ctccgaggag acggtcggcg
      961 cggtcatcct cggcgacgcc acggcgatca aggaaggcga caccgtcaag accaccggtc
     1021 gcgtcgtcga ggtgccggtc ggccaggcgc tgatcggccg cgtcgtcgac cccctcgggc
     1081 ggccgctcga cgacaagggc cagatcgaga cgaagaagac ccgcccggtc gagcgcatcg
     1141 cccccggcgt catcgtccgc cagggcgtcg acaccccggt ccagaccggc atcaaggcca
     1201 tcgacgccct catcccgatc ggccgcggcc agcgcgagct gatcatcggc gaccgccaga
     1261 cgggcaagac ggcgatcgcc atcgacacga tcatcaacaa caaggactcc gacgtgatct
     1321 gcatctacgt cgcgatcggg cagcggatgt cgacggtcgt gcagctgaaa gagacgctcg
     1381 cggaaaacgg cgcgatggag aacacgatca tcgtcgccgc cccggccgac gaggcggcgc
     1441 cgatcaagta catcgccccc tacgcgggct gcgcgatggg cgagcacttc ctctacaacg
     1501 gcaaagcggc gctctgcgtc tacgacgacc tcaccaaaca cgcttccgcc taccggcaga
     1561 tgtcgctgtt gctgcggcgc ccgccgggtc gcgaggccta cccgggcgac gtcttctact
     1621 tgcactcccg cctgctcgag cgttgcgcaa agctgtcgaa ggaactcggc ggcggttcga
     1681 tgacgggcct gccgatcatc gagaccaagg gcaacgacat ctcggcctac atcccgacca
     1741 acgtcatctc gatcaccgac ggccagctgt tcctgcagtc cgacctcttc aacgccaacc
     1801 agcgcccggc gatcgacgtc ggcgtctcgg tctcgcgcgt cggcgggggc gcccaggtga
     1861 aggccatgcg caacgtcacc
//
LOCUS       DATDDI010000416         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_737450, whole genome shotgun sequence.
ACCESSION   DATDDI010000416 DATDDI010000000
VERSION     DATDDI010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_737450"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..460
                     /locus_tag="VIU37_05975"
     CDS             <1..460
                     /locus_tag="VIU37_05975"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF013007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY6013530.1"
                     /translation="ISTDPDVRFAVAKRIVERAADHGIPREDVVVDPLVMPIGAMRTA
                     GRQVFALLNRLRDELKVNTTCGASNVSFGLPEREGINAAFLPMAIASGMTSAITNPLM
                     PEVKAAVMAADVLMGHDPDCGRWILAHRAPVPEGETGRRRVNRRAAAPVA"
     gene            471..>2147
                     /locus_tag="VIU37_05980"
     CDS             471..>2147
                     /locus_tag="VIU37_05980"
                     /inference="COORDINATES: protein motif:HMM:NF025925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASKHA domain-containing protein"
                     /protein_id="HEY6013531.1"
                     /translation="MAPRTGSQAPGAEPTGDDALVIFTPSGRRGRFATGTTVLDAARS
                     LGVDIDSVCGGRGICGRCQVSPGIGAFPKHGITSALDHLSPFASLETAYRDEHGLATD
                     RRLSCTATVRGDLLIDVPPESQVHRQVVRKGLDVRTFTVDPIVRLHFVEVTPPELASP
                     TGDLARLFEALEREWQLTDLEADLEVIRQLQPALEAGRYGVTVAVHEARQVIAVWPGL
                     HERAYGVAIDVGSTTIAGHLANLADGEVLASHGVMNPQIRFGEDLMSRVSYAMMHPEG
                     AGEMTAAVRKALDGLIATLAMRAGIKRVEILELAIVGNPIMHHLLLGIDPTPLGGAPF
                     ALATDRAVRTTAAELGLRTHPGARVYVLPCIAGHVGADTAGVILAEEPHLADRLTLVV
                     DVGTNAEIVLGDRHRLLAASSPTGPAFEGAQISGGQRAAPGAIERVRIDRETLEPRFR
                     VIGVDGWSDEPAFAAAMDGEDGDTPGITGICGSGIIEVVAELFLAGIVTADGVIDGSL
                     AERSPRIVPDGRTFSYVLHDPGTGPAGPRILITQNDVRAIQLAKAALYAGV"
BASE COUNT          290 a          817 c          743 g          297 t
ORIGIN      
        1 catctcgacc gatcccgacg tccggttcgc cgtcgccaag cggatcgtcg agcgcgccgc
       61 tgaccacggc atcccgcgcg aggacgtcgt ggtggacccg ctcgtcatgc cgatcggcgc
      121 gatgcgcacc gcgggccgcc aggtgttcgc cctgctcaac cgcctgcgcg acgagctcaa
      181 ggtcaacacc acctgcggcg cgtcgaacgt cagcttcggc ctgcccgagc gcgaaggcat
      241 caacgccgct ttcctgccga tggcgatcgc cagcggcatg acgtcggcga tcaccaaccc
      301 gttgatgccc gaggtcaagg cggcggtcat ggctgccgac gtgctgatgg gccacgaccc
      361 cgactgcggc cgctggatcc tggcccatcg ggcgccggtt cccgagggcg agaccggccg
      421 ccgacgcgtc aatcgccgcg ccgccgcgcc ggtcgcctag gccgccggtc atggcgccac
      481 ggacgggctc ccaggcgccg ggtgcggagc cgaccgggga cgacgcgctc gtcatcttca
      541 ccccgtccgg ccgccgcggc cggttcgcga cgggcaccac ggtcctggac gcggcgcgct
      601 cgctcggcgt ggacatcgat tcggtctgtg gcgggcgggg gatctgcggt cgctgccagg
      661 tcagcccggg gatcggtgcg ttccccaagc acgggatcac ctcggcgctc gatcatctct
      721 cgccgttcgc gtcgctcgag acggcctacc gcgacgaaca cggcctggcc acggatcggc
      781 ggctgtcgtg cacggccacg gtccggggcg atctcctgat cgacgtccct ccggagagcc
      841 aggtccaccg ccaggtggtc cgcaagggcc tcgacgtgcg gacgttcacg gtcgatccca
      901 tcgtccgcct ccacttcgtc gaagtcacgc cgcccgagct cgcctcgccc accggcgacc
      961 tggcgcggct gttcgaggcg ctcgagcgcg agtggcagct gaccgatctc gaggcggacc
     1021 tcgaagtgat ccgtcagctc cagccggcgc tcgaggccgg ccgctacggc gtcacggtcg
     1081 ccgtgcacga ggcccgccag gtcatcgccg tgtggcccgg cctgcacgaa cgggcctacg
     1141 gcgtggcgat cgacgtcggc tcgaccacga tcgccggcca tctcgccaac ctcgccgacg
     1201 gggaggtcct ggccagccac ggcgtcatga acccgcagat ccggttcggt gaggacctga
     1261 tgagccgcgt ctcgtacgcg atgatgcatc ccgagggggc gggcgagatg accgccgccg
     1321 tgcgcaaggc gctcgacggg ctgatcgcca cgctggcgat gcgggcgggg atcaagcgag
     1381 tcgagatcct cgagctcgcg atcgtgggca acccgatcat gcaccacctc ctgctgggca
     1441 tcgaccccac gccgttgggc ggcgcgccgt tcgccctggc gaccgaccgg gcggtccgaa
     1501 cgaccgccgc cgagctcggc ctccggacgc acccgggcgc ccgggtctac gtcctgccct
     1561 gcatcgccgg ccatgtgggg gccgacacgg ccggggtgat cctggccgag gagccgcacc
     1621 tcgccgaccg gctgaccctc gtcgtcgacg tcgggacgaa cgcggagatc gtcctcggcg
     1681 accgccaccg gctgctcgcc gcctcgagcc cgaccgggcc ggccttcgag ggcgcccaga
     1741 tcagcggcgg ccagcgtgcc gcgccgggcg cgatcgagcg ggtccggatc gaccgcgaga
     1801 cgctcgagcc ccgcttccgc gtcatcggcg tcgacggctg gtccgacgag cccgccttcg
     1861 cggccgcgat ggacggggag gacggcgaca cccccggcat caccgggatc tgcggctccg
     1921 ggatcatcga ggtcgttgcc gagctcttcc tcgccggcat cgtcaccgcg gacggcgtca
     1981 tcgacggctc gctcgccgag cgttctccgc ggatcgttcc ggatggccgg acgttcagct
     2041 acgtcctgca cgaccctggc accggcccgg ccggccccag gatcctcatc acccagaacg
     2101 acgtccgggc catccagctg gccaaggccg ccctatacgc cggagtc
//
LOCUS       DATDDI010000417         1643 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_550404, whole genome shotgun sequence.
ACCESSION   DATDDI010000417 DATDDI010000000
VERSION     DATDDI010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550404"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..212)
                     /locus_tag="VIU37_05985"
     CDS             complement(51..212)
                     /locus_tag="VIU37_05985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013532.1"
                     /translation="MPPDSGASPDQPADLPGLPQVVRLAAYGVIVRDGRLLSADLVEG
                     VLAGLEAGG"
     gene            232..>1643
                     /locus_tag="VIU37_05990"
     CDS             232..>1643
                     /locus_tag="VIU37_05990"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6013533.1"
                     /translation="MTSDATKMRPWSGDRAPAGWGLGDGQAIPWEYAPAPESREIVVI
                     KERYGLFINGREVEASDKGVFQTVNPATEEKLADVARATPADVDRAIAAARRAQRRSW
                     GSLPGRERAKYLFRIARILQERSREFAVLETMDSGKPIKESRDVDVPLAAAHFWYYAG
                     WADKLEYAFPGRNARPLGVAAQVIPWNFPLLMLSWKIAPALAAGNTVVLKPASTTPLS
                     ALLFADVCRQADLPPGVVNIVPGPAEIGMHLVSSPGVDKVAFTGSTGVGKLIQRAIAG
                     TDKAITLELGGKAANIVFEDAALDQAVEGIVNGIYFNQGEVCCAGSRLLVQESVQGPL
                     IEKLKDRLSTIRVGDPLDKNTDVGAINSKNQLEKITELVASGVAEGADLYQPACDLPD
                     RGFFFRPTLFTNVAQSHRIAKEEIFGPVLSVLTFRTPEEAVEKANNTAYGLSAGIWTE
                     KGSRILWMVRKMRAGVVWANT"
BASE COUNT          265 a          592 c          561 g          225 t
ORIGIN      
        1 gatcacggcg aaggccgcgg ccatgcccag gccaacgagc tcgagggacg tcacccgcca
       61 gcctcgagac ccgcgaggac cccttcgacc aggtcagccg agaggaggcg cccgtcgcgg
      121 acgatgacgc cgtaggcggc cagccggacg acctggggca ggcccggcag gtcggcgggc
      181 tgatcgggcg aggcgccgga atcgggtggc atcccgggta tgatgccgtg cgtgacgagc
      241 gatgccacga agatgcgccc gtggagcggc gaccgcgcgc cggccggctg gggcctcggc
      301 gatggccagg ccatcccctg ggagtacgcg cccgcgcccg aatcgcgtga gatcgtcgtc
      361 atcaaggagc gctacgggct gttcatcaac ggccgcgagg tcgaggcctc ggacaagggt
      421 gtcttccaga cggtcaaccc ggcgaccgag gagaagctcg ccgacgtcgc acgggccacc
      481 cctgccgacg tcgaccgggc catcgccgcg gcccgccgcg cccaacgccg gagctggggc
      541 agcctgccgg gccgggagcg ggccaagtac ctcttccgga tcgcccggat cctccaggag
      601 cggtcgcgcg agttcgccgt cctcgagacg atggattcgg gcaagccgat caaggagtcc
      661 cgcgacgtcg acgttcccct cgccgccgcc cacttctggt actacgcggg ctgggccgac
      721 aagctcgagt acgccttccc gggccggaac gcccggccgc tcggggtcgc ggcccaggtg
      781 atcccctgga acttcccgct cctgatgctc agctggaaga tcgcgccggc gctggcggcc
      841 ggcaacaccg tcgtcttgaa gccggcctcg acgacaccgc tctcggccct cctcttcgcc
      901 gatgtctgcc gccaggccga cctgcctccc ggggtcgtga acatcgttcc cggcccggcc
      961 gagatcggga tgcacctggt ctcgagcccc ggcgtcgaca aggtcgcctt caccggatcg
     1021 accggggtcg gcaagctcat ccagcgggcg atcgccggca cggacaaggc gatcaccctg
     1081 gagctcggcg gcaaggccgc caatatcgtc ttcgaggatg ccgccctcga ccaggcggtc
     1141 gaggggatcg tgaacggcat ctacttcaac cagggcgagg tgtgctgcgc cggctcgcgc
     1201 ctgctcgtcc aggagtccgt ccaggggccg ctcatcgaga agctgaagga ccgcctctcg
     1261 acgatccgcg tcggcgaccc gctcgacaag aacaccgacg ttggcgcgat caactcgaag
     1321 aaccagctcg agaagatcac cgagctcgtc gcctcgggtg tcgccgaggg cgccgatctc
     1381 taccagccgg cctgcgatct ccccgaccgc ggcttcttct tccggccgac cctgttcacg
     1441 aacgtcgccc agagccaccg gatcgcgaag gaggagatct tcgggccggt cctctccgtg
     1501 ctgaccttcc ggacgcccga ggaggcggtc gagaaggcca acaacaccgc ttacggcctc
     1561 tcggccggca tctggaccga gaagggcagc cggatcctgt ggatggtccg caagatgcgg
     1621 gccggcgtcg tctgggccaa cac
//
LOCUS       DATDDI010000418         6186 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_300453, whole genome shotgun sequence.
ACCESSION   DATDDI010000418 DATDDI010000000
VERSION     DATDDI010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 6186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6186
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300453"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            328..1725
                     /locus_tag="VIU37_05995"
     CDS             328..1725
                     /locus_tag="VIU37_05995"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013534.1"
                     /translation="MNVGDGPVHDVPTPRRQRLRLTDLGWRGALRHRNFRLFWFGQMV
                     SLVGTWMQSVAQAWLVLLLTHDPLWLGVVAAVQFTPVLVLGLFGGIVADVLPKRRTVM
                     GTQTALMLLALVLAGLSWTGVVQVWHILVLALCLGFVNAVDMPTRQAFVMEIVGREDV
                     ANAVALNSAMFNAARIVGPAIAGLVIGVVGVTICFLLNGLSFVAVIVGLAAMREADLH
                     VGERLARPHSVGEVGANLAEGLRYVRHTPVVLLAVCLVGLISTLGMNFNVLMPPMAEN
                     VLDVGASGFGFLMSAMGFGSLVAALGVAMLRRPRLSVLLVGAFALGILEAAFAWIRFF
                     PLSLAAVFLAGAGAIAMTATANSAIQLAVPDALRGRVMSVYMTVFAGSTPVGGLLAGW
                     LASSFGAPVALAFGGGTSAAASVIAAIWVLRSGHFELRRARRNIRGLGVEQDPTEGGT
                     GGGLIASRVRHHLHR"
     gene            complement(1991..5398)
                     /locus_tag="VIU37_06000"
     CDS             complement(1991..5398)
                     /locus_tag="VIU37_06000"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013535.1"
                     /translation="MSDRFHPISMEQLTRWVFTELDRKDSLFNIPRTAFFVPRADHRF
                     RLREHGVELDTPFGVAAGPHSQMAQNIVAAWLAGARVIELKTIQTLDELDVHKPCIDV
                     TDEGYNVEWSQELRVHQSFDEYLRAWVLIHALHRRFGWPGETPGVLFNMSVGYNLEGI
                     LRPNVQWYFDAMADASAWLPAYVDIVARYEPAVRDIAIASRLSDTITLSTMHGCPPDE
                     IERISEYLLVDKGLHTSVKCNPTLLGPELVRSIVNDDLGFADVPIPDAAFGHDLKYDD
                     AVPMFRRLQAVAARRGLGFGLKLSNTLEVENWRTVFDRDPTMYLSGRPLHAVTANLAH
                     RLAEAFDGGLPLSFAGGADAFNVADLLGGGMRTITVASDLLKTGGYLRLLQYTEQTDE
                     AFDAAGASSIEDFIVRSAAAAGFAGATDGAPATVAACAADNLRRYADAVRHDWRYRKA
                     SFRMDHSKTTRALGAFDCIQAPCVDTCPVDQAVPRYMDAVRRGDVAEAIRITREDNPL
                     PSILGRACDHLCESTCVRTHLDQPLAIRHIKRFIMDQEAADDGRETVPPATGLRVAII
                     GAGPAGLAAARELARAGIAVTIFEAQAYAGGMVGGAIPEYRLPQARLDQDLAVLERLG
                     VEIRYGVRAGVDVTLEGLRADGFAAVFVAVGAQAARRLDLPGADAEGIVDGVTFLRGV
                     REGRPMAIGARVGVVGAGDTAMDCARSALRLGAAGVSLIYRRTIDQMPADPEEIHDAV
                     AEGIRIVELASPAGLRVEAGHLAGLVCTRTEYRGDRDAGGRKVPHDVPGSAFEIGLDT
                     LIVAISQHSLLDFFGDRAPELTPAGFIAVDPVTFETSVPGVYAGGDVAAHGPASIVRA
                     AADGKRVAAAIAASHGLARPVAATPEEPVDVRALVVRRARREYRVPIRATGLDDRSGF
                     AETSVGYTREEAIAEASRCLDCHTICSLCVGVCPNLALMTYESEPVAADLPGLVVRDG
                     TVVPTGTSSRLRFAADQRLQIAVLTDFCNECGNCVTACPTSGSPYRDKPRLYLDRADF
                     LDQPSNAFMHLGGGVMEGRFAGETHRIVVGETIDYRAPSFRAVLRPGSLELVEAAPAG
                     AADGEELSLEPAAIMATLLAGLRASMPHIPVASEGGTFVAEPVLPTG"
     gene            complement(5410..>6186)
                     /locus_tag="VIU37_06005"
     CDS             complement(5410..>6186)
                     /locus_tag="VIU37_06005"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6013536.1"
                     /translation="EGSLDVIAEACAEVGVRSLLAYGITDRHGPDGARRGLAENERFI
                     RAGGRGLVGIHAAFTCSDDSLAAAAGLAGDLGVGVHIHVCEGVGDAGAPGRLGGLTRD
                     DWLLAHAVHLPTDHDLRGTILHNPMSNLNNAVGYANPARFSNPVALGTDGIGGNVLEA
                     FRLAYVLERSVDVTCGPDTAWRWLATGWDLVPEARDDSVTWSYDPMDPWHVAFTPGIR
                     PLEVTVGGEVVLRDGRPTRVDAAEIRAKAREQAARLHARL"
BASE COUNT          840 a         2164 c         2285 g          897 t
ORIGIN      
        1 ccctgacctc cgacgcgggc aagcagctga cggacgccgt cgcggcgctc aaggccgccc
       61 tcgcgagcag ctgatccgtc gcgagacgcc cagctgatcc gtggcgagac gcccggccgg
      121 tgccgggcgt ctcgcacgtc acccgtaggc gcgcgcctgg agctcgtaca gctcggcgta
      181 caggccgccc gaccgcagca acgtcgggtg atcgccggtc tccacgatcc ggcccccgtc
      241 gaccaggatc aggtccgcca gccgggcgca gaaccttcac gtgaacggca aggtttgcta
      301 ccatgacccg gtgacgacgg ttctgccatg aacgtcggcg atggaccggt gcacgacgtg
      361 cccactcccc gacgtcagcg ccttcgactg accgacctcg gctggcgggg tgcgctccgc
      421 catcgcaact tccggctctt ctggttcggc cagatggtct cgctcgtcgg cacctggatg
      481 cagtcggtcg cccaggcgtg gctggtcctg ctgctgaccc acgatccgct ctggctgggt
      541 gtggttgcgg ccgtccagtt cacccccgtg ctcgtgctcg ggctgttcgg cgggatcgtc
      601 gcggacgtgc tgcccaagcg ccggacggtg atggggacgc agaccgccct gatgctcctc
      661 gccctggtcc tggccggcct gtcgtggacc ggggtcgtcc aggtctggca catcctcgtg
      721 ctcgcgctct gcctgggctt cgtcaacgcg gtcgacatgc cgacgcgcca ggccttcgtg
      781 atggagatcg tcggccgcga ggacgtcgcc aacgccgtcg cgctcaactc ggcgatgttc
      841 aacgcggccc gcatcgtcgg cccggcgatc gcgggcctgg tgatcggcgt cgtcggcgtg
      901 acgatctgct tcctcctcaa tgggctgagc ttcgtcgcgg tgatcgtcgg gctggccgcg
      961 atgcgcgagg ccgatctcca cgtcggcgag cggctggccc gcccgcacag cgtcggggag
     1021 gtgggcgcca acctcgcgga gggactccgc tacgtccgcc acacgccggt cgtgctgctg
     1081 gcggtctgcc tggtcggcct catctcgacg ctcgggatga acttcaacgt gctgatgccg
     1141 ccgatggccg agaacgtgct cgacgtgggc gcgtccgggt tcggcttcct catgtcggcg
     1201 atggggttcg gctcgctggt cgccgcgctc ggggtggcca tgcttcgtcg cccgcggctg
     1261 tcggtgttgc tcgtcggcgc cttcgcactc ggcatcctcg aggccgcgtt cgcctggatc
     1321 cggttcttcc cgctgtctct cgccgccgtg ttcctggccg gcgccggcgc gatcgccatg
     1381 acggcgacgg ccaactcggc catccagctg gcggtgccgg acgcgctgcg cgggcgcgtg
     1441 atgagcgtct acatgacggt gttcgcgggc tcgaccccgg tcggcggcct gctggccggc
     1501 tggctggcct cgtcgttcgg ggcgccggtc gcgctggcgt tcgggggcgg gacgtccgcc
     1561 gccgcgagcg tcatcgccgc gatctgggtg ctccggagcg gccacttcga actgcgacgc
     1621 gcgcggcgca atattcgcgg cctcggggtc gaacaggatc cgaccgaggg cgggacgggc
     1681 ggcggcctga tcgcgtcgcg tgtcaggcac caccttcacc gctagcggag gcactcggcc
     1741 gagtgcgggc tgcccagccg gtgagcattg cgtcgttcgg gagagtcgcc ggcagacgtt
     1801 tggcaccgca cgtgcaccgc tcgtcggagg aactgcgcga ttgacgggca cgatcgggcg
     1861 aatcgcgacc ggtggccgcg acatccacgg cccagccgat gcaaagcgca ggggaggcgc
     1921 atgcaacaac cggtcgaccc gggtgccggc cgacgcgggc gtccgcctga gccggcacag
     1981 ccgagcggga ctagccggtg ggcagcacgg gctccgccac gaacgtcccg ccctcgctgg
     2041 ccaccgggat gtgcggcatg gacgcacgca gcccggccag gagcgtggcc atgatcgccg
     2101 cgggctcgag tgacagctcc tctccgtcgg cggcgccggc cggggcggcc tcgaccagct
     2161 cgagacttcc cggtcggagg acggcccgga agctcggtgc ccggtagtcg atcgtctccc
     2221 ccaccacgat tcgatgcgtc tcgcccgcga accggccttc catgacgccg ccgcccaggt
     2281 gcatgaacgc gttcgacggc tggtcaagga agtccgcccg gtccaggtag aggcgcggct
     2341 tgtcgcggta cggcgagccc gaggtgggac acgcggtgac gcaattgccg cactcgttgc
     2401 agaagtcggt caggaccgcg atctggagcc gctgatcggc ggcgaaccgg agccgtgacg
     2461 acgtccccgt cgggacgacc gtgccgtcgc ggaccaccag gccgggcagg tcggccgcga
     2521 cgggctcgga ctcgtaggtc atcagcgcca ggttcgggca gacgccaacg cacaggctgc
     2581 agatcgtgtg gcagtcgaga catcgcgacg cctcggcgat cgcctcctca cgggtgtacc
     2641 cgaccgaggt ttcggcgaag ccgcttcgat cgtcgagacc tgtggcgcgg atcgggaccc
     2701 ggtactcgcg ccgggcacgc cggacgacga gggcccggac gtcgacgggc tcctcggggg
     2761 tcgccgcgac gggccgggcc agtccatggc tcgcggcgat cgcggcggcc actcgcttgc
     2821 cgtcggcggc cgcgcggacg atcgatgccg ggccgtgggc cgcgacgtcg ccaccggcgt
     2881 agacgcccgg gacggacgtc tcgaacgtga ccgggtcgac ggcgatgaac ccggccgggg
     2941 tcagctccgg cgcccggtcg ccgaagaagt cgagcaggga gtgctggctg atcgcgacga
     3001 tcagcgtgtc gaggccgatc tcgaacgccg aacccgggac gtcgtgtggc accttccggc
     3061 cgccggcgtc gcggtcgccg cggtactcgg tccgggtgca gaccaggccg gccaggtgcc
     3121 ccgcctccac ccgcagaccg gccggactgg cgagctcgac gatgcggatg ccttcggcca
     3181 cggcgtcgtg gatctcctcc gggtcggccg gcatctggtc gatcgtccgc cggtagatca
     3241 gcgacacgcc cgcggccccg agacggaggg ccgagcgggc gcagtccatc gcggtgtcgc
     3301 cggcaccgac gacgccgacg cgggcgccga tcgccatcgg gcggccctcg cgcacgcccc
     3361 ggaggaaggt gacgccgtcg acgatcccct cggcatccgc gcccggaagg tccaggcgcc
     3421 gggccgcctg ggcgccgacc gcgacgaaca ccgcggcgaa cccgtcggct cggaggccct
     3481 cgagcgtgac gtcgacgccg gcccgcacgc cgtagcggat ctccacgccg agccgctcga
     3541 ggaccgcgag gtcctggtcg agccgcgcct gcggcaaccg gtactccggg atggcaccgc
     3601 cgaccatgcc gccggcgtac gcctgcgcct cgaagatcgt gaccgcgatg cccgcccggg
     3661 ccagctcgcg agcggcggcc agccccgccg ggccggcgcc gatgatcgcg acgcgcagtc
     3721 ccgtcgcggg agggaccgtc tcgcgaccgt cgtcggcggc ctcctggtcc atgatgaacc
     3781 gcttgatgtg gcggatcgcc agcggctggt cgaggtgcgt ccgcacgcag gtcgactcgc
     3841 acaggtgatc gcatgcccgg ccgaggatgg acggcagcgg gttgtcctcg cgggtgatcc
     3901 ggatcgcctc ggcgacgtcg ccgcggcgga ccgcgtccat gtaccgcggc acggcctggt
     3961 cgaccgggca ggtgtcgacg cacggcgcct ggatacagtc gaacgcgcca agcgcgcgcg
     4021 tcgtcttcga atggtccatc cggaacgacg ccttgcggta tcgccagtcg tggcggacgg
     4081 cgtcggcgta ccggcgcagg ttgtcggcgg cgcacgccgc gacggtcgcc ggagcaccgt
     4141 cggtcgcgcc cgcgaacccc gccgccgcgg ccgaccggac gatgaagtcc tcgatcgagc
     4201 tcgcgccggc cgcatcgaac gcctcgtcgg tctgctcggt gtattggagg agccggaggt
     4261 agccgccggt cttgagcagg tccgacgcga cggtgatcgt ccgcatgccg ccgccaagga
     4321 ggtccgccac gttgaaggcg tcggcgccgc cggcgaacga gagcggcagc ccgccgtcga
     4381 acgcctcggc gagccggtgt gcgaggttcg ccgtgaccgc atggagcggc cggccagaca
     4441 ggtacatcgt gggatcacgg tcgaagacgg tccgccagtt ctcgacctcg agcgtgttcg
     4501 acagcttgag accgaagccg agcccgcggc gcgcggccac ggcctgcagc cggcggaaca
     4561 tggggaccgc gtcgtcgtac ttgaggtcgt gcccgaaggc ggcgtccggg atcggcacgt
     4621 ccgcgaaccc gaggtcgtcg ttgacgatgg agcgcacgag ctcggggccg agcagcgtcg
     4681 ggttgcactt gaccgaggtg tggaggccct tgtcgaccag caggtactcg gagatccgct
     4741 cgatctcgtc gggcgggcag ccgtgcatcg tggacagcgt gatcgtgtcc gacagccggc
     4801 tcgcgatcgc gatgtcgcga acggccggct cgtaccgagc gacgatgtcg acgtaggccg
     4861 gcagccaggc cgacgcgtcg gccatcgcgt cgaagtacca ctggacgttc gggcgcagga
     4921 tgccctcgag gttgtagccg acgctcatgt tgaacagcac gcccggtgtc tcgcccggcc
     4981 agccaaaccg gcggtggagg gcgtggatca ggacccaggc gcggaggtat tcgtcgaacg
     5041 actggtggac gcgcagctcc tgcgaccatt cgacgttgta gccctcatcg gtgacgtcga
     5101 tgcagggctt gtggacgtcg agctcgtcga gcgtctggat cgtcttgagc tcgatgacgc
     5161 gggcgccggc gagccaggcg gcgacgatgt tctgggccat ctgggagtgc gggccggccg
     5221 ccacgccgaa cggcgtgtcg agctcgacgc cgtgctcccg aaggcggaac cgatggtccg
     5281 cccgggggac gaagaaggcc gtccgcggga tgttgaacag cgagtccttc cggtcgagct
     5341 cggtgaacac ccagcgggtg agctgctcca tcgagatcgg atggaaccgg tcggacatcg
     5401 gatggtcgct cagagccggg cgtggaggcg agcggcctgc tcgcgggcct tggcgcggat
     5461 ctccgcagcg tcgacccggg tcggccggcc gtcgcgcagg acgacctcgc cgccgacggt
     5521 gacttccagc ggccggatcc ccggggtgaa cgcgacgtgc catggatcca tcgggtcgta
     5581 cgaccaggtg acgctgtcgt cgcgcgcctc ggggacgagg tcccagcccg tggcgagcca
     5641 gcgccacgcg gtgtcgggtc cgcaggtgac gtcgaccgag cgctccagca cgtacgccag
     5701 ccggaatgcc tcgaggacgt tgccgccgat cccgtcggtc ccgagcgcga ccgggttcga
     5761 gaagcgggcc gggttcgcgt agccgaccgc gttgttcagg ttggacatcg ggttgtggag
     5821 gatcgtcccg cgcaggtcat ggtcggtcgg caggtggacg gcatgtgcca gcagccagtc
     5881 gtcgcgggtc aggcccccca ggcgaccggg cgcgccggcg tcgccgacgc cttcgcagac
     5941 gtggatatgg acgccgaccc cgaggtcgcc ggccagcccg gccgccgcgg ccagcgagtc
     6001 gtccgagcag gtgaacgcgg cgtggatacc gacgaggccc cggccgcccg cgcggatgaa
     6061 tcgctcgttc tcggccaggc cccgcctggc gccgtcggga ccgtgacggt cggtgatccc
     6121 gtaggccagc agcgagcgaa cgccgacctc ggcgcaggcc tcggcgatca cgtcgaggct
     6181 gccctc
//
LOCUS       DATDDI010000419         1840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_259023, whole genome shotgun sequence.
ACCESSION   DATDDI010000419 DATDDI010000000
VERSION     DATDDI010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259023"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..743
                     /locus_tag="VIU37_06010"
     CDS             <1..743
                     /locus_tag="VIU37_06010"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013537.1"
                     /translation="QIQAARYAASTSGVPFDTALAAALDRQASVAGVGVAVEAVSDVT
                     ANPNGFAVGAQSQVILFMFLTSMTGAVIVVSTRQLGITRREFSTPTSVPTIIAGETLG
                     RFAFALFQGGFIVAASALLFGVDWVDPFATGALIIAFALVSAGAALLLATLASNENQL
                     GALGPALGMILGLLGGTMVPMEVFPDTIRTLSHVTPHAWAMDAFHRLLLEGGGLADVL
                     VEVGVLVGFALVLLTLAVFRFRRAITTA"
     gene            757..921
                     /locus_tag="VIU37_06015"
     CDS             757..921
                     /locus_tag="VIU37_06015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013538.1"
                     /translation="MTIRRHPGLELAAIVLLLFSAMLDPVLTVGLAAALLAGGFVLAY
                     LGEDRRDRSR"
     gene            1167..>1840
                     /locus_tag="VIU37_06020"
     CDS             1167..>1840
                     /locus_tag="VIU37_06020"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013539.1"
                     /translation="MPSSPAGTPIPIDRLRTELQGRVITPDDPDYDVARTVFVGGIDR
                     RPAVITRPAGAPDVARVLALARETGAELAVRSGGHSNGGLGVSEGGIVIDLRDMRGIE
                     IDAAGRTAWAETGLTARDYSTAAAEHGLATGFGDTGSVGIGGITLGGGIGYLVRKHGL
                     TIDDLLAAEVVTADGELLHVDAANHPDLFWAIRGGGGNFGVATRFRYRLHDVSSFVGG
                     MLMLPAT"
BASE COUNT          235 a          697 c          621 g          287 t
ORIGIN      
        1 cgcagatcca ggcagcccgc tatgccgcct cgacgagcgg cgtcccgttc gacaccgcgc
       61 tcgccgcggc cctggaccgg caggcctcgg tcgccggcgt gggcgttgcg gtcgaggcgg
      121 tcagtgacgt cacggccaac cccaacggct tcgcggtcgg cgcccagagc caggtcatcc
      181 tgttcatgtt cctgaccagc atgaccgggg ccgtcatcgt ggtctccacc cggcagctcg
      241 ggatcacccg tcgcgagttc tcgacgccga cgagcgtccc caccatcatc gccggcgaga
      301 cgctcggccg gttcgccttc gccctcttcc agggcggctt catcgtcgcc gcgtcggcgc
      361 tgctcttcgg cgtggactgg gtggacccat tcgcgaccgg cgcgctcatc atcgccttcg
      421 cgctcgtgtc ggccggcgcg gccctgctcc tggccacgct cgcctccaac gagaaccagc
      481 tcggcgcgct cggaccggca ctgggcatga tcctcggcct gctcggcggc acgatggtgc
      541 cgatggaggt cttcccggac accatccgca cgctgtcgca cgtcacgccg cacgcctggg
      601 cgatggacgc cttccaccgg ctcctgctcg agggcggtgg actcgccgac gtcctggtcg
      661 aggtgggggt gctggtgggc ttcgcgctcg tcctcctcac gctcgccgtc ttccgcttcc
      721 gccgggcgat caccaccgca tgacgaggcc acggccatga ccatcaggcg ccatcccgga
      781 ctcgagctcg cggcgatcgt tcttctcctg ttcagcgcca tgctcgatcc ggtcctcacc
      841 gtcgggctcg ctgccgcgct gctggccggc gggttcgtgc tggcctacct cggcgaggat
      901 cggcgagacc gcagccggta ggccggccgg acgccggctg gcgtcacggc gtcgtcgcct
      961 cggtgacggc accgatgagt tccgccggcg gcgtccgtct tcctggtgac cacctcgacg
     1021 ccgacgggcg ccgtgagcga cacggacgcc ggcatgccgg acaatcgtgc aactcctggc
     1081 gacttcgtcc agcccgagcc tcacggaacg gccatccccg ttcccgagtg ctgaaccgtc
     1141 ccatcagcat ccgaaaggag ccactcgtgc catcctcgcc cgctggaacc ccgatcccca
     1201 tcgaccggct gcgcaccgag ctgcagggcc gggtgatcac ccccgacgat cccgactacg
     1261 acgtggcgcg caccgtattc gtcggcggca tcgaccgccg gcccgcggtg atcacgcgac
     1321 cggccggcgc gcccgacgtc gcgcgggtcc tcgcgctcgc gcgggaaacc ggcgcggagc
     1381 tggcggtccg cagcggcggc cacagcaacg gcggtctcgg cgtgtccgag ggcgggatcg
     1441 tcatcgacct tcgcgacatg cgaggcatcg agatcgatgc cgccggccgg acggcctggg
     1501 cggagacggg cctgaccgcc cgcgactact cgacggcggc ggccgagcac ggcctggcca
     1561 ccggtttcgg cgacaccggc tcggtcggca tcggcgggat cacgctgggt ggcgggatcg
     1621 gctatctggt ccgcaagcac gggctcacga tcgacgacct gctggctgcc gaggtcgtca
     1681 ccgcggatgg cgagctgctc cacgtcgacg cggcgaacca ccccgacctg ttctgggcca
     1741 tccgtggcgg tggcggaaac ttcggcgtgg ccacccgctt ccggtaccgg ctccacgatg
     1801 tcagcagctt cgtcggcggg atgctcatgc tgccggcgac
//
LOCUS       DATDDI010000420         4077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_550471, whole genome shotgun sequence.
ACCESSION   DATDDI010000420 DATDDI010000000
VERSION     DATDDI010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550471"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..1099
                     /locus_tag="VIU37_06025"
     CDS             170..1099
                     /locus_tag="VIU37_06025"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013540.1"
                     /translation="MNESVLATLVAIAAASIRLATPYLYASIGEMFAQRSGVLNLGVD
                     GIMLVGAFAAFYGTLMTGSLWVGVLLAVVAGLAMGLLMSVISVTLKAEQGISGIGLSL
                     FGLGLSSLLFKTLVGTVKTVDGFQPVRIPGLSELPYLGDILFSQSLPVYTAFLLVPVS
                     WYVLERTSWGLKVRAVGQNPAAADTLGVNVDLTRYLCVCLGAMLAGLAGASLSIALVN
                     LFQENLTAGAGYIAVALVYFGGWRPIGILLGALLFSTVTAIQLRMQVLGIQIPSDFAV
                     MLPYVLTILALTFSANRARQPAALNQPFERGGA"
     gene            1184..2248
                     /locus_tag="VIU37_06030"
     CDS             1184..2248
                     /locus_tag="VIU37_06030"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEY6013541.1"
                     /translation="MKLRTSLMAAAALSLIVVACSNSATQAPATSQPSTTPTEAASTA
                     PEASPSQAAKKFRVALIMPSATTDLAFSQSMYQALVAEQQKAGGEANFEIKYTENMFN
                     VPDAQAAIRDYASQGFDLVIAHGSQYGAGVEEIAKDFPAVSFAWGTDVNTFGLPNVYA
                     YTAAAEEGGYVNGVIAAMVSKSKKIGVTGPVEVGDAKTYIDGFTQGVAATDPSITVSK
                     TWTGSFSDVAAMTEAAKAHITAGADVLTGSSQSVVGSIGAAKDAGNVLWFGTQSDQVS
                     LAPNLVVSSQVYDWTVVLDDMIAKIQSGTLGGDTYTLQLKNGGLKIAYNSGYNLAADA
                     KAAGDKAIADITSGAVTVNP"
     gene            2356..3918
                     /locus_tag="VIU37_06035"
     CDS             2356..3918
                     /locus_tag="VIU37_06035"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013542.1"
                     /translation="MNAIRRIEMRDIVKRFPGVLANDHVNFDVNAGEVHALLGENGAG
                     KSTLVRQLYGLYRPDEGEILIDGQPVVFRSPADAIRAGIGMIHQHFMLVPTLTVAENV
                     ALGLKSSRGIRLDLDVVSKRIIDLSRTYGLKVDPSAYVWQLAVGEQQRVEIIKALYRG
                     ASLIILDEPTAVLTPQEVDDLFVTLRRMAGEGHALTFISHKLHEVMAISDRVTALRDG
                     RMAGTRPTAGATKEELAQMMVGREVRTLAPQPMRSRETRLRIEDVHAMGDRGTEALRG
                     VSLDLCGGQIVGLAGVSGNGQRELAQCLAGLRPVTGGRIEIEARDMTRSSLDERIGAG
                     LAYVPEERMRDGAIREFSVQENVFLHEHADPRFTRGIFLDFGAMKAHARDLVTRFSIK
                     TPSLDTPLKNLSGGNIQKLILARELSRRPRVLVAAQPTRGVDIGATEYIHERLLEQRD
                     AGTAILLISEDLDEIQELSDVIAVMYEGRIVGTVARGAASPERLGLLMAGVAPAAEES
                     PAGSAGPQAVSA"
BASE COUNT          651 a         1474 c         1341 g          611 t
ORIGIN      
        1 acaagatgca gcgcgccgtc caggtcccgt cggcgctcat ccaggccatc ctcggcctga
       61 tcgtgctgtt cgtggtcggc tcccagtact gggcccgtcg gcgggccgcc cggcgggtcg
      121 acgcgctcgc cacggccgcg ccggccgtcg ggaacgaaga gaccccggcg tgaacgagag
      181 cgtgctggcc accctggtag ccatcgcggc cgcgtcgatc cgcctcgcga cgccctacct
      241 gtacgcgtcc atcggggaga tgttcgcgca gcgctccggg gtcctcaacc tgggtgtcga
      301 cgggatcatg ctggtcggcg ccttcgccgc cttctacggg acgctgatga ccggcagcct
      361 gtgggtcggc gtcctcctcg cggtggtcgc gggcctcgcc atgggcctcc tgatgtcggt
      421 catcagcgtg accctcaagg ccgagcaggg gatcagcggg atcgggctgt cgctgttcgg
      481 cctcggcctg tccagcctcc tgttcaagac gctggtcggg acggtcaaga ccgtcgacgg
      541 cttccagccg gtccgcatcc cgggcctgag cgagctgccc tacctcgggg acatcctgtt
      601 cagccagagc ctgccggtgt acaccgcctt cctgctcgtc ccggtcagct ggtacgtcct
      661 cgagcgcacg tcctggggcc tcaaggtccg tgccgtcggc cagaacccgg cggccgccga
      721 caccctgggc gtcaacgtcg acctgactcg ctacctgtgc gtctgcctcg gggcgatgct
      781 cgccgggctg gccggggcat cgctgtcgat cgccctcgtc aacctgttcc aggagaacct
      841 gaccgccggc gccggctaca tcgccgtggc actcgtctac ttcggcggct ggcgaccgat
      901 cggcatcctg ctgggtgccc tcctgttcag cacggtcacc gccatccagc tccggatgca
      961 ggtcctcggg atccagatcc cgtccgactt cgcggtcatg ttgccgtacg tcctgaccat
     1021 cctcgccctg accttctccg ccaaccgagc tcgccagccg gcggcgctca accagccatt
     1081 cgaacgcgga ggggcctgac ggtcccaccc gggaggtacc gatcgacatc accgacctga
     1141 acgtcgcgca gacaccctgc gtccacatcg caagaaggga cacatgaagc tccggacatc
     1201 gctcatggcg gcagctgcgc tgtcactcat cgtggtggcg tgcagcaact ccgcgaccca
     1261 ggctcccgct acgtcccagc cgtcgaccac ccccaccgaa gccgcgtcga ccgcgcccga
     1321 ggcgtccccg tcgcaggcgg ccaagaagtt ccgcgtggcg ctcatcatgc cgagcgccac
     1381 caccgacctc gccttcagcc agtcgatgta ccaggcgctg gtggccgagc agcagaaggc
     1441 cggcggcgag gccaacttcg agatcaagta caccgagaac atgttcaacg tgccggatgc
     1501 gcaggcggcc atccgcgact acgcgtcgca ggggttcgac ctcgtcatcg cccacggctc
     1561 gcagtacggc gccggcgtcg aggagatcgc caaggacttc ccggccgtct cgttcgcgtg
     1621 gggcaccgac gtcaacacct tcggcctgcc gaacgtctac gcgtacacgg ccgcggccga
     1681 ggaaggcggc tacgtcaacg gcgtcatcgc cgccatggtc agcaagtcca agaagatcgg
     1741 cgtcacgggt ccggtcgagg tcggcgacgc gaagacgtat atcgacggct tcacgcaggg
     1801 cgtcgccgcg accgatccgt cgatcaccgt ctccaagacg tggaccggct cgttctcgga
     1861 cgtcgcggcg atgacggagg ccgccaaggc ccacatcacc gccggcgccg acgtgctcac
     1921 gggctcgtcg cagtcggtcg tcggatcgat cggcgcggcc aaggacgcgg gcaacgtgct
     1981 ctggttcggc acccagtcgg atcaggtctc gctcgccccc aacctcgtgg tttcctcgca
     2041 ggtctacgac tggacggtcg tcctcgacga catgatcgcc aagatccagt cgggcaccct
     2101 cggtggtgac acgtacaccc tccagctcaa gaacggcggt ctcaagatcg cctacaacag
     2161 cggctacaac ctggccgcgg acgccaaggc ggccggcgac aaggccatcg cggacatcac
     2221 cagcggtgcg gtcacggtca atccgtagcg caccacgcaa cctccggagc ccgggagcga
     2281 gccgccacgc ggttcgctcc cgtcccgggc cctcctgccc tacccccggt tgatggccat
     2341 ggaccgatcg aaccgatgaa cgcaatccgg cgcatcgaga tgcgcgacat cgtcaagcgc
     2401 ttcccgggcg tcctcgccaa cgatcacgtc aacttcgacg tgaacgccgg cgaggtccac
     2461 gcgctgctcg gcgagaacgg cgccggcaag agcaccctgg tccggcagct ctacggcctc
     2521 taccggcccg acgagggcga gatcctcatc gacgggcagc cggtggtctt ccgctcgccc
     2581 gccgacgcga tccgggccgg gatcgggatg atccaccagc acttcatgct cgttccaacg
     2641 ctgacggtcg ccgagaacgt cgcgctcggg ctcaagtcgt cgcgcggcat ccggctggac
     2701 ctcgacgtcg tgtcgaagcg gatcatcgac ctgtcgcgga cctacgggct gaaggtggac
     2761 ccgagcgcct acgtctggca gctcgcggtc ggcgagcaac agcgcgtgga gatcatcaag
     2821 gcgctctatc gcggggccag cctgatcatc ctcgacgagc cgacggccgt cctgacaccg
     2881 caggaggtcg acgacctgtt cgtcaccctg cggcggatgg ccggcgaggg ccatgccctg
     2941 acgttcatct cgcacaagct ccacgaggtg atggcgatca gcgaccgcgt caccgcgctg
     3001 cgcgacggcc ggatggccgg cacgcgaccg acggccggtg ccaccaagga ggagctggcg
     3061 cagatgatgg tcgggcgcga ggtcaggacc ctcgccccgc agccgatgcg gagccgcgag
     3121 acgcgcctgc gcatcgagga cgtgcacgcg atgggcgacc gcggcaccga ggcgctgcgc
     3181 ggggtcagcc tcgacctgtg cggcggccag atcgtcgggc tcgcgggcgt gtcgggcaac
     3241 ggccagcggg agctcgccca gtgcctcgcc gggctgcggc cggtgaccgg cggccggatc
     3301 gagatcgagg cacgcgacat gacgcgctcg tccctcgacg aacggatcgg cgcgggcctg
     3361 gcctacgtcc cggaggaacg gatgcgcgac ggcgcgatcc gcgagttcag cgtccaggag
     3421 aacgtcttcc tgcacgagca cgccgatccg cgcttcaccc gcggaatctt cctcgacttc
     3481 ggcgccatga aggcgcatgc ccgcgacctc gtgacccggt tctcgatcaa gaccccatcg
     3541 ctcgacacgc cactcaagaa cctgtcgggc ggcaacatcc agaagctgat cctcgcccgc
     3601 gagctgtcgc gccggcccag ggtcctggtc gccgcccagc ccacccgcgg cgtcgacatc
     3661 ggcgcgaccg agtacatcca cgaacgcctg ctcgagcaac gggacgccgg cacggccatc
     3721 ctcctgatct cggaggatct cgacgagatc caggagctgt cggacgtgat cgcggtcatg
     3781 tacgaggggc ggatcgtcgg gaccgtggcc cggggggccg cctcgcccga gcggctcggc
     3841 ctgctgatgg ccggcgtcgc tcccgccgcc gaggagtcgc ccgccgggtc ggccgggccg
     3901 caagccgtca gcgcgtgagt tcaggtgagc taatgaatct aggtagaaca aatcgtttga
     3961 cgtaatcgat ccggatggag cacgctccat ccggatgggc gcccggcggt tgccgcgcgc
     4021 cgtcgggtgc cggtgcggcc cgaacaagaa ggagcaactc gatgcggctc gcgtcac
//
LOCUS       DATDDI010000421         2257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_466810, whole genome shotgun sequence.
ACCESSION   DATDDI010000421 DATDDI010000000
VERSION     DATDDI010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466810"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..887
                     /locus_tag="VIU37_06040"
     CDS             <1..887
                     /locus_tag="VIU37_06040"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6013543.1"
                     /translation="DEQRVLWRGITASDGTVYKPPILAYLAVDGYESPRQWDVLAERV
                     TRIAMSKFGQAAMPGSEFAPHGVDTSLYHPRDRAESKRELGLDPDRLLILRVDKNTWR
                     KDYPSLWKALRPVLRRHPEVDVHWHCRPVAQDGFDLNAVRWNDEDVRDRVTMTADLAG
                     FVGWPEGRLAILFAAADLFVSTAWGEGFGLNLLQAIASGVPVIAQDCSSIPEVVGPGG
                     ILVRPKGRISVPMGQEQCLPDVEKFTYWIEHLVNSPKQREALGRAGAEHAKAFSWDTA
                     AEKFNTILEREIAKSAHP"
     gene            920..>2257
                     /locus_tag="VIU37_06045"
     CDS             920..>2257
                     /locus_tag="VIU37_06045"
                     /inference="COORDINATES: protein motif:HMM:NF042641.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6582 domain-containing protein"
                     /protein_id="HEY6013544.1"
                     /translation="MGITTAASKLPPLKPGEFRFVTNGLQIEMEPAGPDAKGRRRFKA
                     IASSTAKDLRGDEMQMSAMEDMVAAFRRGLNVFMDHEHTAQNIFGRTDSAEIRDSGQI
                     DPRNGARIWDLHVAGTVNEPNKKAMELADSIDGGYVSFGTSIGAFITKFDKKKDGGRS
                     IEHVNCKELSVVGLPMQERAWTYKSANANWTKRAADATATMEQNALFDGEDPEGLDTF
                     SLDTESTPEVIEPSQPVLEAEKAADEPVLDEKAEMSAKTRNDLPATEFACPEKRKYPI
                     NDAAHVRAALSRVADPNNDQCGKDKILAAAKRMGIGEAAEKGLSDEDLLVWAATDPEM
                     LRNAASICGECGHDASCACTDCDCGSHVHTGDTDNDGDDPAHGNDPDMDGKAADLALD
                     TKSDTTTGGQEASEAIPETAPAAEPEPDPAPEQKALAFETADVVTLVGHVRNLT"
BASE COUNT          412 a          824 c          757 g          264 t
ORIGIN      
        1 gggacgagca gcgcgtcctg tggcgcggca tcaccgcgtc ggacgggacg gtctacaagc
       61 cgcccatcct cgcctacctc gcggtcgacg gctacgagag cccgcggcag tgggacgtcc
      121 tcgccgagcg ggtgacccgg atcgcgatga gcaagttcgg gcaggccgcg atgccgggct
      181 ccgagttcgc cccccacggc gtcgacacga gcctctacca cccccgcgac agggccgaga
      241 gcaagcgcga actcgggctc gacccggacc gcctgctgat cctccgcgtg gacaagaaca
      301 cgtggcgcaa ggactacccg agcctctgga aggcgctgcg gcccgtgctg cggcggcacc
      361 ccgaggtgga cgtccactgg cactgccgcc ccgtcgcgca ggacgggttc gacctcaacg
      421 cggtccgctg gaacgacgag gacgtccgcg accgggtgac catgacggcc gacctcgcgg
      481 gcttcgtcgg ctggcccgag gggcgcctcg ccatcctgtt cgccgccgcg gacctgttcg
      541 tctcgaccgc gtggggcgag gggttcgggc tcaacctgct ccaggccatc gcgtccggcg
      601 tgcccgtcat cgcgcaggac tgctcgtcca tccccgaggt cgtcggcccc ggcggcatcc
      661 tcgtgcggcc caagggccgc atcagcgtcc cgatggggca ggagcagtgc ctgcccgacg
      721 tcgagaagtt cacctactgg atcgagcacc tcgtcaactc ccccaagcag cgcgaggccc
      781 tcggccgcgc gggcgccgag cacgccaagg cgttctcgtg ggacaccgcc gcagagaagt
      841 tcaacaccat ccttgagcgc gagatcgcga agtccgcgca cccgtaacgc cagcagccac
      901 cgctgcggaa ggaggacacg tggggatcac gaccgcagcc tcgaagctgc cgcccctcaa
      961 gcccggcgag ttccgcttcg tcacgaacgg gctccagatc gagatggagc ccgcggggcc
     1021 cgacgccaag ggccgccgcc ggttcaaggc catcgcctcc tcgaccgcca aggacctccg
     1081 cggcgacgag atgcagatgt ccgcgatgga ggacatggtc gccgcgttcc ggcgcggcct
     1141 caacgtcttc atggaccacg agcacaccgc gcagaacatc ttcggccgga ccgactcggc
     1201 cgagatccgc gactcgggcc agatcgaccc gcgcaacggc gcccgcatct gggacctcca
     1261 cgtcgcgggc acggtcaacg agcccaacaa gaaggcgatg gagctggccg actcgatcga
     1321 cggcggctac gtgtcgttcg gcacctcgat cggcgccttc atcaccaagt tcgacaagaa
     1381 gaaggacggc ggccggagca tcgagcacgt caactgcaag gagctgtccg tggtgggcct
     1441 gccgatgcag gagcgggcgt ggacctacaa gtccgcgaac gccaactgga cgaagcgcgc
     1501 cgccgacgcg accgcgacga tggagcagaa cgccctgttc gacggggagg acccggaggg
     1561 cctcgacacg ttcagtctgg acaccgagtc cacccccgag gtcatcgagc cgtcacagcc
     1621 cgtcctggag gcggagaagg ccgctgacga gcctgtcctc gacgagaagg ccgagatgtc
     1681 ggccaagacg cgcaatgacc tgcccgcgac cgagttcgcg tgcccggaga agcgcaagta
     1741 cccgatcaac gacgcggccc acgtgcgggc cgccctgagc cgggtcgcgg accccaacaa
     1801 cgaccagtgc ggcaaggaca agatcctcgc cgccgcgaag cgcatgggga tcggcgaggc
     1861 ggccgagaag ggcctgtccg acgaggacct gctcgtctgg gcggccaccg accccgagat
     1921 gctccgcaac gccgcctcga tctgcggcga gtgcgggcac gacgcgagct gcgcctgcac
     1981 cgactgcgac tgcggcagcc acgtccacac cggagacacc gacaacgacg gggacgaccc
     2041 ggcccacggg aacgaccccg acatggacgg caaggccgca gaccttgccc tcgacaccaa
     2101 gagcgacacc acgacgggtg gtcaggaagc ctccgaggcg atccctgaga cagcgcccgc
     2161 ggccgagccc gagcccgacc ctgcccccga gcagaaggcg ctcgcgttcg aaaccgcaga
     2221 cgtggtcacg ctggtcggcc atgtgcggaa cctcacc
//
LOCUS       DATDDI010000422         1817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_487995, whole genome shotgun sequence.
ACCESSION   DATDDI010000422 DATDDI010000000
VERSION     DATDDI010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487995"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1320)
                     /locus_tag="VIU37_06050"
     CDS             complement(<1..1320)
                     /locus_tag="VIU37_06050"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY6013545.1"
                     /translation="MSIRVRLALWFTLILGVVVVALSLAASQLTSDSLLSELHRDVHQ
                     RASELVATVGPTVLAGTAEEASAGTRTIDVFSQLDVYCQVVDAQGNLVASSSNLGKWH
                     LPFQAAPSGEIQHELPVGKVPLILDQQPVLVDGRLAGYVIVGRSPSVIYQALGRLRGV
                     LYPAAGLALLLAGLAGWLLVRRAIRPLDRMGAAAAAIAASQDHGQRLAYAGPDDEIGK
                     VARTIDEMLAALERAHTQVEAANASQRQFLLDVSHELRTPLTIMLSSLDVLARTGKDD
                     PAYLDKTLRQLRAEADRMRRMVAQLLIMARSDTDLPMGRRPVLLAETLADACRQTWTN
                     GTTLTVDQVALRELEDTVVEGDGDYLKQLFLILLDNAVKYTPSGGSVSVTGQLDGATV
                     AVEVADTGIGIPEPDLPRVFERFYRAANARISEGSGLGLAIAQRIAGL"
     gene            complement(1317..>1817)
                     /locus_tag="VIU37_06055"
     CDS             complement(1317..>1817)
                     /locus_tag="VIU37_06055"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013546.1"
                     /translation="MPGPDGFEVCRRLRLAHNAPIIMLTARDETSDKVRALDLGADDY
                     VAKPFAFDELMARIRAVLRRQHGGDEAIGYDDLLVEPGTREVRRGDASIELTAREYDL
                     LLFFIRHARQVLTRDQVLEHVWGFATPVETNVVEVHVGHLRQKLEAGGGRRLIQTYRG
                     IGYALR"
BASE COUNT          264 a          619 c          672 g          262 t
ORIGIN      
        1 gaggcccgcg atccgctggg cgatcgccag gccgagcccg ctgccctcgg agatccgcgc
       61 gttggccgcg cggtagaagc gctcgaagac cctgggcagg tcgggctccg ggatgccgat
      121 cccggtgtcc gccacctcga cggcgacggt ggccccatcg agctgcccgg tgaccgacac
      181 cgaaccgccc gatggggtgt acttgaccgc gttgtcgagg aggatcagga acagctgctt
      241 gaggtagtcg ccgtcgccct cgacgaccgt gtcctcgagc tcgcggaggg cgacctgatc
      301 gacggtcagc gtcgtgccat tggtccaggt ctggcggcag gcgtcggcca gcgtctcggc
      361 gaggaggacg ggccggcgcc ccatcggcag gtcggtgtcg gagcgggcca tgatcagcag
      421 ctgggccacc atccggcgca tccggtcggc ttcggcccgg agctggcgca gggtcttgtc
      481 caggtaggcc gggtcgtcct tgccggtccg cgccaggacg tcgagcgacg acagcatgat
      541 cgtgagcggc gtccgcagct cgtgcgacac gtccagcagg aactggcgct ggctggcgtt
      601 ggcggcctcg acctgcgtgt gcgcgcgctc gagcgccgcc agcatctcgt cgatcgtccg
      661 ggcgaccttg ccgatctcgt cgtccggtcc ggcatacgcc aggcgctgcc cgtggtcctg
      721 gctcgcggcg atggccgccg ccgccgcgcc catgcgatcg agcggccgga tggcgcggcg
      781 caccagcagc caaccggcca gacccgccag caggagggcc agaccggcag ccgggtagag
      841 cacgccacgc agccggccga gggcctggta gatgaccgag ggcgagcgcc cgacgatcac
      901 gtacccggcc agccggccgt cgacgagcac cggctgctga tcgaggatca aggggacctt
      961 gccgaccggc agctcgtgct ggatctcacc ggagggagcg gcctggaacg gcaggtgcca
     1021 cttgccgagg ttgctcgagc tcgcgaccag gttgccctgc gcgtcgacga cctggcagta
     1081 gacgtcgagc tggctgaaca cgtcgatcgt tcgcgtaccg gccgacgctt cctcggccgt
     1141 tcccgcgagg acggtcggac cgacggtcgc gacgagctcg ctggcacgct ggtggacgtc
     1201 ccggtggagc tccgagagga ggctgtcgct ggtcagctgc gaagcggcca ggctgagcgc
     1261 gacgaccacg acgccgagga tcagcgtgaa ccagagcgca agccggacgc ggatgctcat
     1321 cggagcgcgt agccgatgcc ccggtacgtc tggatcagcc gtcgacctcc cccggcctcg
     1381 agcttctgcc ggaggtggcc gacgtggacc tcgacgacgt tggtctcgac cggcgtggcg
     1441 aacccccaaa cgtgctccag gacctggtct cgggtcagga cctggcgggc gtggcggatg
     1501 aagaacagga gcaggtcgta ttcgcgtgcc gtcagctcga tcgaggcgtc gccgcgacgg
     1561 acctcgcgcg tgcccggttc gacgaggagg tcgtcgtagc cgatcgcctc gtcgccgccg
     1621 tgctggcggc ggagcaccgc tcggatgcgt gccatgagct cgtcgaacgc gaacggcttg
     1681 gccacgtagt cgtccgcgcc gagatcgagc gcccggacct tgtccgaggt ctcgtcgcgg
     1741 gcggtgagca tgatgatcgg cgcgttgtgt gcgagccgca gccggcggca gacctcgaac
     1801 ccgtccgggc ccggcat
//
LOCUS       DATDDI010000423         1962 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_696020, whole genome shotgun sequence.
ACCESSION   DATDDI010000423 DATDDI010000000
VERSION     DATDDI010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_696020"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..332
                     /locus_tag="VIU37_06060"
     CDS             <1..332
                     /locus_tag="VIU37_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013547.1"
                     /translation="LIGSMWLFVGITTGIVVWLFAGNLVGFDKTPWPLLLTLLNLPQL
                     SIMISLQVSANRAQAASDARAMADHATLVALHELSKKQVAILDGQNEVLDILRRAVAK
                     GASEPGA"
     gene            381..899
                     /locus_tag="VIU37_06065"
     CDS             381..899
                     /locus_tag="VIU37_06065"
                     /inference="COORDINATES: protein motif:HMM:NF016154.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
                     /protein_id="HEY6013548.1"
                     /translation="MWTLGVPIPELILRAVVIYVVFFGALRLFGKREVGQFTLFDLAL
                     VLLAANALQPAITGSDASVTGGLILVLTLFVLNRGVSLLRVRSAFVRRLLEFGPTVVG
                     RDGAWLLPELVRQGLDLVDVEAALREHGLDDVGQMKTATLEADGSISIVAIDDAPAGK
                     AVRRRRRYRRPL"
     gene            complement(973..1518)
                     /locus_tag="VIU37_06070"
     CDS             complement(973..1518)
                     /locus_tag="VIU37_06070"
                     /inference="COORDINATES: protein motif:HMM:NF036410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5317 family protein"
                     /protein_id="HEY6013549.1"
                     /translation="MFILYAIPIGILAGLVLGGRLVRLGDLRLRWAPLAVLGLVVQVI
                     LFADPVSAAVGDAAPAIYVASTAAVLVAVLRDARVPGMAIIALGAASNLAAIVANGGY
                     MPADPAALASVVDLSPGYSNSVVVADPALRPLTDLYALPAAVPFANVFSVGDVLIGVG
                     VALTILFAMRAASPTAGRPAG"
     gene            complement(1528..>1962)
                     /locus_tag="VIU37_06075"
     CDS             complement(1528..>1962)
                     /locus_tag="VIU37_06075"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY6013550.1"
                     /translation="DAGAPWPLAARFDHDPEASWGPMELLAHVAEMLPYWLGEIERIL
                     AAPAGPVPFGRVGSDPVRIALIGRDRTLPTAELYVRIDSWLERWAHRLATLTPDQRSR
                     VGLHPTLGEMTVEAIVGRMIVNHLGEHATQLESILDGLSKPG"
BASE COUNT          289 a          695 c          711 g          267 t
ORIGIN      
        1 ggctgatcgg ctcgatgtgg ctgttcgtcg gcatcaccac cgggatcgtg gtgtggctct
       61 tcgccggcaa cctcgtcggg ttcgacaaga cgccgtggcc gctgttgctg accctcctca
      121 acctgccgca gctgtcgatc atgatctcgc tgcaggtgag cgccaaccgc gcccaggccg
      181 cgagcgacgc gcgcgcgatg gcggatcacg cgacgctggt ggccctgcac gagctcagca
      241 agaagcaggt cgcgatcctc gacgggcaga acgaggtcct cgacatcctg cgccgggccg
      301 tggccaaggg agcgtcggag cccggggcct gacccgccgc cggagatcgc cgcgagccgg
      361 tccgttcgag ggagtgcgcc atgtggacgc tgggtgtgcc gatacccgag ctgatcctcc
      421 gggcggtcgt catctacgtc gtcttcttcg gggcgctccg gctgttcggc aagcgcgagg
      481 tcggccagtt cacgctgttc gacctggccc tcgttctcct cgcggccaac gccctgcagc
      541 ccgcgatcac cggatcggac gcgtccgtca cgggcgggct gatcctcgtc ctgaccctgt
      601 tcgtcctgaa tcggggtgtc agcctgttgc gggtcagaag cgcgttcgtt cgccggctcc
      661 tggaattcgg gcccaccgtc gtgggacgtg acggcgcgtg gctcctgccg gagctcgtcc
      721 ggcagggtct cgatctcgtg gacgtcgagg cagcgcttcg cgagcacggg ctcgacgacg
      781 tcggacagat gaagacggcg acgctcgagg ccgacggctc gatcagcatc gtggcgatcg
      841 acgacgcccc ggccggcaag gccgtccgac gccggaggcg gtaccgccgc ccgctctagc
      901 cgctccggtc aggggtggga gacccgctct cgagcaggtg gcgatggccg ccccggatcg
      961 cacccggcgc ggctacccgg ctggacggcc ggccgtcggc gatgcggccc gcatggcgaa
     1021 caggatcgtg agggcgactc cgaccccgat cagcacgtcg ccgacgctga agacgttggc
     1081 gaaggggacg gccgcgggca gggcgtacag gtcggtcagc ggccggagcg cgggatcggc
     1141 gaccaccacg ctgttcgaat agcccggcga caggtcgacc accgaggcga gcgccgccgg
     1201 gtcggccggc atgtacccgc cgttcgccac gatcgcggcg aggttcgacg cggcaccaag
     1261 ggcgatgatc gccatgcccg gtacccgcgc gtcccggagc acggccacga gcacggcggc
     1321 ggtggaggcc acgtagatcg ccggtgccgc gtccccgacc gcagcgctga ccgggtcggc
     1381 gaacaggatg acctggacga ccaggccgag caccgcgagc ggcgcccagc gcaaccgcag
     1441 gtcgccgagc cggacgagcc ggccaccgag gacgagcccg gccaggatcc cgatcgggat
     1501 cgcgtacagg atgaacaccg ctccggatca gcccggcttc gacagaccgt ccaggatgga
     1561 ctcgagctgc gtggcgtgct cgcccaggtg gttcacgatc atccgcccga cgatcgcctc
     1621 gaccgtcatc tcgcccaggg tcggatgcag gcccacccgc gaccgctggt ccggcgtcag
     1681 cgtggcgagg cggtgggccc agcgctcgag ccacgaatcg atgcggacgt acagctccgc
     1741 cgtgggcagc gtccggtccc ggccgatcag cgcgatccgg accggatcgc tgccgacccg
     1801 tccgaacggg acgggccccg cgggcgcggc caggatccgc tcgatctcgc ccagccagta
     1861 ggggagcatc tcggcgacgt gggcgaggag ctccatcggc ccccacgacg cctccggatc
     1921 gtggtcgaag cgggcggcca ggggccaggg cgctccggca tc
//
LOCUS       DATDDI010000424         1760 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_259121, whole genome shotgun sequence.
ACCESSION   DATDDI010000424 DATDDI010000000
VERSION     DATDDI010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259121"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VIU37_06080"
     CDS             <1..245
                     /locus_tag="VIU37_06080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013551.1"
                     /translation="SSFEAIYALGDGLVNVAAAAPGDPGFRGGRWMVLPVTWNTTPVQ
                     LTSAEAVEAAADAGWLTIASDPVRLFFCSVNHVPHS"
     gene            325..1113
                     /locus_tag="VIU37_06085"
     CDS             325..1113
                     /locus_tag="VIU37_06085"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013552.1"
                     /translation="MSALTTRPILVVDDDAKIVRLVRTYLERDGFMVVTAADGPAALN
                     AIERHRPALVVLDLMLPELDGRAVIRAVRRDEEAGATPILVLSARGTTVDRIAGLEDG
                     ADDYLPKPFSPAELVLRVKSILRRAAAGTGSPEAQLSGSTPVISTASPTIRHADLVVD
                     PDRHEVTRDGRPIPLTRVEFRLLQTILEADGRVLSRDQLLDAIYGHDQADVLDRTVDV
                     HIGRLRDKLGDDADQPRYVATVRGVGYRAAPAGGGEPRSAAEPA"
     gene            1110..>1760
                     /locus_tag="VIU37_06090"
     CDS             1110..>1760
                     /locus_tag="VIU37_06090"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY6013553.1"
                     /translation="MIGRGIAARIALAALVSAAAGLAILAIGVTVVGAESFKSLMEEA
                     GVSADHAQRMYDQSVSTVVVAAVIVAALASIGLAVLMARMLARPLAEVGSAARRIAAG
                     DYAARVPREGPEELASLADSFNQMAAGLERQEQLRRDFIANAAHELRTPLTNLQGYLE
                     ALRDGVIAPAPEVFDSLREEVDRLTRLAASLDVLAGAGATGAGTGRGGTGPADARVL"
BASE COUNT          226 a          688 c          618 g          228 t
ORIGIN      
        1 cctcgtcctt cgaggcgatc tacgccctcg gcgacgggct ggtcaacgtg gccgcggccg
       61 cgcccggcga cccgggcttc cgcggcgggc gatggatggt gctgccggtc acctggaaca
      121 cgacgccggt ccagctcacc agcgccgagg cggtcgaggc cgcggccgac gcgggctggc
      181 tgacgatcgc gtccgatccc gtgcggctct tcttctgctc ggtcaaccac gtcccccaca
      241 gctgacgctg ccaaccgcag cgtgatcggc ccgggcgcaa cgaccccgtc gcgcccgggc
      301 ctccgcgcgc ctacgatgcc atcgatgagc gccctgacca cccgcccgat cctcgtcgtc
      361 gacgacgacg cgaagatcgt ccgcctcgtc cggacctacc tcgagcgcga cggattcatg
      421 gtcgtgaccg cggccgacgg accggccgcc ctcaacgcca tcgaacgaca ccggccggcg
      481 ctcgtcgtcc tcgacctcat gctgcccgag ctcgacggcc gggccgtgat ccgcgcggtt
      541 cgccgcgacg aggaggcggg cgcgaccccg atcctcgtcc tgtcggcgcg gggcacgacc
      601 gtggaccgga tcgccgggct cgaggacggc gccgacgact acctgccaaa gccattctcg
      661 cccgccgagc tcgttctccg ggtgaagtcg atcctgcgcc gtgcggcagc gggaacgggc
      721 agcccggagg cccaactgtc gggctcgacc cccgtgatct ccaccgccag cccgacgatc
      781 cgtcacgccg acctcgtggt cgaccccgat cggcacgagg tgacccgtga cggccggccg
      841 atcccgctca cccgggtcga gttccgcctc ctgcagacga tcctcgaggc ggacggccgg
      901 gtgctcagcc gcgatcagct gctcgacgcg atctacggcc acgaccaggc cgacgtcctc
      961 gaccggaccg tggacgtcca catcgggcgg ctccgcgaca agctcgggga cgacgccgac
     1021 cagcctcgct acgtggccac cgtgcgcggc gtcgggtacc gtgccgcccc ggccggcggc
     1081 ggcgaaccgc gttccgcggc ggagcccgcg tgatcggccg cgggatcgcc gcccggatcg
     1141 ccctggcggc cctggtctcg gccgcggccg ggctggcgat cctcgccatc ggcgtgaccg
     1201 tcgtcggcgc cgagagcttc aagtcgctca tggaggaggc gggcgtatcc gctgatcatg
     1261 cccaacggat gtacgaccag tcggtcagca ccgtggtcgt cgcggcggtc atcgtggccg
     1321 cgctcgccag catcgggctg gccgtcctga tggcccggat gctcgcccgg ccgctggccg
     1381 aggtgggctc ggcagcccgg cggatcgccg ccggcgacta cgcggcccgc gtcccgcgcg
     1441 aagggcccga ggagctcgcc tcgctggccg actcgttcaa ccagatggcg gccgggctcg
     1501 agcgccagga gcagttgcgc cgcgacttca tcgccaacgc ggcgcacgag ctgcggaccc
     1561 cgctgaccaa cctgcagggc tacctcgagg cgctccgcga cggggtcatc gcccccgccc
     1621 ccgaggtctt cgactcgctg cgcgaggagg tggaccgcct cacccggctc gcggcctcgc
     1681 tcgacgtgct cgcaggcgcg ggcgcgacgg gagcaggcac ggggcgcggc ggcacgggcc
     1741 ccgccgacgc gcgggtgctg
//
LOCUS       DATDDI010000425         3389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_716831, whole genome shotgun sequence.
ACCESSION   DATDDI010000425 DATDDI010000000
VERSION     DATDDI010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3389
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716831"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /locus_tag="VIU37_06095"
     CDS             <1..836
                     /locus_tag="VIU37_06095"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEY6013554.1"
                     /translation="PSLMGMLAFWSTLSLNMPDFTRFGKSQRTQAYGQTLGLPTTMTL
                     FPLIAVLVTSAAIQVYPNDKLSDLFNPVYLVGKFDNPIVVILALFTLAVATLSVNVAA
                     NIVSPSYDFSNAWPRRISFRTGGLITGLLGILIQPWNLYNDPHAYIFTWLNTYGGATG
                     AIAGVLIADYWWVRHTDLRVADLYRSNGIYRYVRGWNWKAVVALLVGIVFAIGGSYTA
                     AGTDGPFPVNGIIPILKDPFPFADYSWVVGLIVSFLLYGILTKYLPSKEVLPEAAGQP
                     A"
     gene            complement(943..1545)
                     /locus_tag="VIU37_06100"
     CDS             complement(943..1545)
                     /locus_tag="VIU37_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013555.1"
                     /translation="MATETDAARDRVLASRAALGEELDALEASVRAAIDIPAKVRRSP
                     AKAAAVAGSAGFLVLGGPGRLFRRARRAVFGPTAGLPKSMLPKEIEKTLRQLGDDGDK
                     VRGAIERDFADYAKQAAKENPPVTALLAANIARPMIRRGIKAAGEWFLRTDDEGFSAR
                     LAEVRERAAEGVAKRRATGEATPPEPAETTLTDESGTAGA"
     gene            complement(1506..2258)
                     /locus_tag="VIU37_06105"
     CDS             complement(1506..2258)
                     /locus_tag="VIU37_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013556.1"
                     /translation="MALVRAHLDLARTEIGEIAGEVGRMVALAALAIAVMLFAGLLLV
                     IGGTLFLSEWLLGSMGWGVLHGILLAIAVAVTAAVLAVGMPARRVARWLLVAVVVGLA
                     VGGALGLELPNQLYRNLGDGAGLTVEAGVRPLVAGLLVGALVGLVLGIVVAATVVGSG
                     GGRFATMLGLIVAGALVGAFSAITFGPQVGAAVGITAGYLTWIALMAADVARSGIDID
                     AMKTRFYPTATIETSKETLEWLQKRMPPGIGS"
     gene            2484..>3389
                     /locus_tag="VIU37_06110"
     CDS             2484..>3389
                     /locus_tag="VIU37_06110"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEY6013557.1"
                     /translation="MPPPTPPSRRLLTAELLSIGSELTVGDTRDTNAGELARSLTAMG
                     VRVGRLTALPDDLDAVSEAFRLGIARSDLVVSTGGLGPTPDDLTREAVAAACGETPAV
                     DPDLEAWLRELWRRRGLPFPELNLKQAWRIPSATILDNPNGTAPGWFVARPDGRVIVA
                     LPGPPREMRPMWADQAVPRLRAFGLGTQVAARTYRLTGIGESQVADLLGERLLRATNP
                     IVATYARTEAVDVRVSATAAPPRSAEELVDEAAATVLDKLGPYVWATGETTWSEAIGG
                     RLAELGWTAAAVEIGTGGSLSALFGD"
BASE COUNT          463 a         1279 c         1172 g          475 t
ORIGIN      
        1 ggccgtcgct catgggcatg ctcgccttct ggtcgaccct gtccctgaac atgccggact
       61 tcacccgctt cgggaagagc cagcggacgc aggcctacgg ccagaccctc ggcctgccga
      121 cgacgatgac gctgttcccg ctgatcgcgg tgctcgtcac gtcggcggcg atccaggtct
      181 atcccaacga caagctgtcg gacctgttca acccggtcta cctggtcggc aagttcgaca
      241 acccgatcgt cgtcatcctc gccctgttca cgctcgcggt cgcgaccctc tcggtcaacg
      301 tcgccgcgaa catcgtcagc ccctcatacg acttctcgaa cgcgtggccc cggcggatca
      361 gcttccgcac cggcggcctg atcacgggcc tgctgggcat cctgatccag ccgtggaacc
      421 tctacaacga cccccacgcc tacatcttca cctggctcaa cacgtacggc ggcgccaccg
      481 gcgccatcgc cggcgtgctc atcgccgact actggtgggt ccgccacacc gacctgcgag
      541 tcgccgacct ctatcggtcc aacgggatct accgctacgt ccgtggctgg aactggaagg
      601 cggtcgtcgc cctcctcgtc ggcatcgtgt tcgcgatcgg cggctcgtac acggccgcgg
      661 gcacggacgg cccgttcccc gtgaacggga tcatcccgat cctgaaggac ccgttcccgt
      721 tcgccgacta cagctgggtc gtcgggctga tcgtgtcctt cctgctctac ggaatcctga
      781 ccaagtacct ccccagcaag gaagtgctgc cggaagccgc cgggcaaccc gcctgactga
      841 acgggctcgg ccaccggccg aacccggcgc aagacgcaac cggcgtgagg cccctctccg
      901 gaggggcctc accgtgtcgt gtggctcgcc agtccccgac gatcaggcgc cggcggtccc
      961 cgactcgtcc gtgagcgtcg tctctgcggg ttccggcggc gtcgcctccc cggtcgcgcg
     1021 gcgcttggcg acaccctcgg ccgcccgttc gcgcacctcg gcgaggcgcg ccgagaaccc
     1081 ttcgtcgtcg gtccgcagga accactcgcc ggcggccttg atcccgcgcc ggatcatcgg
     1141 cctggcgatg ttcgcggcga ggagcgccgt gaccggcggg ttctccttgg ccgcctgctt
     1201 ggcgtagtcc gcgaagtccc gctcgatggc tccgcggacc ttgtcgccgt cgtccccgag
     1261 ctggcgcagg gtcttctcga tctccttggg aagcatcgac ttgggcaggc ccgcggtcgg
     1321 gccgaacacg gcccggcgag cgcgccggaa cagccgcccc ggcccgccga gcacgaggaa
     1381 gccggcgctg ccggccaccg cggccgcctt ggccgggctg cgccggacct tggccggaat
     1441 gtcgatcgcg gcccgcacgg acgcctcgag cgcgtcgagc tcctcgccca gcgcggctcg
     1501 ggacgctagg acccgatccc gggcggcatc cgtttctgta gccactcgag tgtctccttg
     1561 ctcgtctcga tcgtcgcggt gggatagaag cgagtcttca tcgcgtcgat gtcgatgccg
     1621 ctgcgggcca cgtccgcggc catcagcgcg atccaggtga ggtaccccgc ggtgatcccc
     1681 accgcggcgc cgacctgcgg cccgaacgtg atcgcgctga acgcgccgac gagcgcgccg
     1741 gccacgatca gcccgagcat ggtcgcgaac cggccgccgc ccgatccgac gacggtcgcc
     1801 gccacgacga tcccgaggac gagccccacg agcgcgccga cgagcaggcc cgcgaccagc
     1861 gggcggacgc ccgcttcgac ggtcagcccc gctccgtcgc cgaggttccg gtagagctgg
     1921 ttcggcaact ccaggccgag cgcgccgccg accgccaggc cgacgacgac cgcgacgagg
     1981 agccagcggg cgacacggcg cgcgggcatg cccacggcga ggaccgcggc ggtcaccgcc
     2041 accgcgatgg ccagcaggat cccgtggagc acgccccagc ccatggagcc cagcagccat
     2101 tccgacagga agagggtccc gccgatcacc agcagcagcc cggcgaacag catgaccgcg
     2161 atcgccagcg cggcgagcgc gaccatccgt ccgacctcgc ccgcgatctc gccgatctcg
     2221 gttcgcgcca ggtcgagatg ggctcggacc agggccacgg cggcctcgcg ggtcgcgccg
     2281 atctgggcac gcaggcccgg agccggtttg cgggggccac cggttggcgg gcgctgttgc
     2341 ggcgggaccg tggttgggtc gtccaggggt cgggctccga ctcggatgcg ccggggcagg
     2401 cgcggggttg tcccggatga tacagcgccc cttcgcacga ccggcagtgc cgttggtcac
     2461 cgtggcgcgg tacgctggcg cgcgtgcctc cacccacccc tccctcgcgg cggctgctga
     2521 ccgcggagct cctgagcatc ggcagcgagc tgaccgtcgg cgacacgcgc gacaccaacg
     2581 ccggcgagct ggcccggtcg ctgacggcga tgggcgtccg agtcggccgc ctgaccgcgt
     2641 tgcccgacga cctggacgcc gtcagcgagg cattccggct cggcatcgcc cggtccgacc
     2701 tggtcgtctc gaccggtggc ctgggtccca cgccggacga cctgacccgc gaggccgtcg
     2761 ccgcggcctg cggagagacg ccggcggtgg acccggatct cgaagcatgg ctgcgcgagc
     2821 tatggcgacg ccgcgggctg cccttcccgg agctcaatct caagcaggcc tggcggattc
     2881 cgtccgcgac gatcctcgac aaccccaacg ggaccgcgcc cggctggttc gtggcacggc
     2941 ccgacggccg cgtgatcgtg gccctgccgg gaccgccgcg cgagatgcgc ccgatgtggg
     3001 cggaccaggc cgtgccccgg ctccgggcgt tcgggctggg cacccaggtg gccgcgcgga
     3061 cctaccggct gaccgggatc ggcgagtcgc aggtggcgga cctgctgggc gagcgcctgc
     3121 tgcgagccac caacccgatc gtcgcgacgt acgcgcgcac ggaggccgtc gacgtgcggg
     3181 tctccgcgac ggcggcaccc ccgcgctcgg ccgaggagct cgtcgacgaa gcggcggcga
     3241 ccgtgctcga caagctcggg ccgtatgtct gggccaccgg ggagacgacc tggagcgagg
     3301 cgatcggcgg gcggctggcc gagctcggct ggaccgcggc ggcggtcgag atcgggactg
     3361 gcggcagcct gtcggccctg ttcggcgac
//
LOCUS       DATDDI010000426         1507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_50921, whole genome shotgun sequence.
ACCESSION   DATDDI010000426 DATDDI010000000
VERSION     DATDDI010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50921"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VIU37_06115"
     CDS             complement(<1..605)
                     /locus_tag="VIU37_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013558.1"
                     /translation="MTEQGSQAASLAERVRLAETAAGVARWDRWGPYLAERQWGTVRE
                     DYSPDGAAWDSFPHDHARSRAYRWGEDGLLGISDDAARLCFAICLWNGADPILKERLF
                     GLGGPEGNHGEDVKEHYRYLDATPSHAYLKAAYRYPQRAFPYTDLVDQNRRRSRSEPE
                     YELVDTGIFDDGRWFDVQVEYAKAEAEDILIRISVTKHGAEP"
     gene            814..>1507
                     /locus_tag="VIU37_06120"
     CDS             814..>1507
                     /locus_tag="VIU37_06120"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6013559.1"
                     /translation="MSKIQETGDRVLANVERVIVGKHHEVRLALVALLCRGHVLIEDV
                     PGTGKTVLAKAIARSLGCSFRRIQFTPDLLPSDVSGLSIYNQKTQEFEFRPGPIMSQI
                     VLADEINRATPKTQSALLECMEEHQATIDGTTYPMPDPFLVIATQNPIEYEGTFALPE
                     AQLDRFMLRLKLGYPQPIEEIVILDEQKRTHPLEELEEVLTVTELLEMQAGIREVYVD
                     SSVSDYIVRLVNN"
BASE COUNT          257 a          520 c          495 g          235 t
ORIGIN      
        1 ggctcggctc cgtgcttggt caccgagatc cggatgagga tgtcctcggc ctccgccttg
       61 gcgtattcga cctggacgtc gaaccagcgg ccgtcgtcga agatgccggt atcgacgagc
      121 tcgtactcgg gctcggaccg gctccgccgc cggttctgat cgaccaggtc cgtgtacgga
      181 aaggcgcgct gcggatagcg gtaggcagcc ttgaggtagg cgtggctcgg cgtggcgtcg
      241 agataccgat agtgctcctt gacgtcctcg ccgtggttgc cctcgggccc gccgagcccg
      301 aacaggcgct ccttgaggat gggatcggcg ccgttccaaa ggcagatcgc aaagcacagg
      361 cgggccgcgt cgtcgctgat cccgagcagg ccgtcctcgc cccagcggta ggcccgcgac
      421 cgggcgtggt cgtgcgggaa cgagtcccag gccgcgccgt cgggggagta gtcctcgcga
      481 accgtgcccc actggcgttc cgcgaggtag ggtccccagc gatcccagcg ggcgacgccg
      541 gcggccgtct cggccagccg gacgcgctcg gcgagcgacg cggcttgcga accttgctcc
      601 gtcattgccg atccgacatc gttcgaggac tgctccacgg gagtcggcga tcgcggagcc
      661 ggggcccggc cgatccattc gatcggaacg ggaaccaaac ccaccgactg gacgtactat
      721 ctgccaacga cgcgacttcg actcgagtcg cattgtccag cgatcccgtc cgttccggcg
      781 ccatgtccac gcgccagacc acgagagagg ccgatgagca agatccagga gaccggcgac
      841 agggttctcg ccaacgtcga gcgcgtcatc gtcggcaagc atcacgaggt ccgtctcgcc
      901 ctggtggccc tgctgtgccg gggccacgtg ctgatcgagg acgtgccggg caccggcaag
      961 accgtcctcg ccaaggccat cgcccggagc ctgggttgct cgttcaggcg gatccagttc
     1021 acgccggacc tgctcccgtc cgacgtgtcg ggcctgtcga tctacaacca gaagacccag
     1081 gagttcgagt tccggcccgg cccgatcatg agccagatcg tgctcgccga cgagatcaac
     1141 cgggccaccc cgaagacgca gtccgccctg ctcgaatgca tggaggagca ccaggcgacg
     1201 atcgacggga cgacctaccc gatgcccgat ccgttcctcg tcatcgccac gcagaacccg
     1261 atcgagtacg agggcacgtt cgccctgccg gaggcgcagc tcgaccggtt catgctccgg
     1321 ctcaagctcg gctaccccca gccgatcgag gagatcgtca tcctcgacga gcagaagcgg
     1381 acgcatccgc tcgaggagct cgaagaggtc ctgaccgtca ccgagctgct cgagatgcag
     1441 gccgggatcc gcgaggtcta cgtcgactcg agcgtgtccg actacatcgt ccggctggtc
     1501 aacaaca
//
LOCUS       DATDDI010000427         2611 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_550596, whole genome shotgun sequence.
ACCESSION   DATDDI010000427 DATDDI010000000
VERSION     DATDDI010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550596"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..573
                     /locus_tag="VIU37_06125"
     CDS             91..573
                     /locus_tag="VIU37_06125"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY6013560.1"
                     /translation="MSMPAVGDPAPEIALPDDTGTIHHLSDQRGRWTILYFYPEDDTP
                     GCTTEACEFRDRNETIHERGADVWGVSPQGTASKRAFREKFELPFTLLADEGHHAADA
                     YGAWAEKLNYGRRYMGIVRSTFLIAPDGRIARVWPKVKAAGHAAEVLEALDRLSAGTA
                     "
     gene            698..1453
                     /locus_tag="VIU37_06130"
     CDS             698..1453
                     /locus_tag="VIU37_06130"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L deacetylase family protein"
                     /protein_id="HEY6013561.1"
                     /translation="MTEPTAPADHAWRPDRFMLIVAHPDDADFGPAGTAARWIDAGSQ
                     GWLVCCTSGDQGGEDPDADPLELAAVREAEQRIAAEIIGYAGVTFLHQPDGALANDLP
                     LREQLVREIRTFRPDAVLATDPDTLFYKGGGINHTDHRAAGLAAVDAVYPAARNPMAF
                     PSLARSGLAAHRVRRMYLFWSDRADTWVDVGATLERKIDALRAHGSQIHDPDALATRI
                     RSWAAEEGAGIGAEAAEALRVIVIDDDQDEGPE"
     gene            complement(1603..>2611)
                     /locus_tag="VIU37_06135"
     CDS             complement(1603..>2611)
                     /locus_tag="VIU37_06135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013562.1"
                     /translation="AYDTHEAAAATAAARGDPRAVRAAKEEAQRTFRSASRLAASAEA
                     VEGAARDWLREINRINAEAREAVAAATRERTAAATIGATLERLGLEADAARIGADTAE
                     AACVAARAAVAECDEREAIDPGAFLLPPLPSLPEADRPDADEVLGIAIEAGATPRIFR
                     LLRGDRTAMTTLVAALAADDPDGAPRWKELLTRLVDAILADAIESSALEFPHDHPFWG
                     PFSLGQAREIVHALGSLGYRFDGRGGWLDERIPSQRDLSLALGYAGLDPMRVRHWPDE
                     AASRALFSEVRVAADEYLAVNAGDLTLGEMITMLGRRADGLAELWNQWGTIRPLLLQD
                     A"
BASE COUNT          360 a          967 c          934 g          350 t
ORIGIN      
        1 cctgtccaac atccggaccg ccgaatccgc gaccgtcacc gtccggcacg ggctgctgct
       61 gatcgtggaa tcccctgcta ggcttccagg atgagcatgc cggccgtcgg cgacccggct
      121 cccgagatcg cccttccgga cgacaccgga accatccatc acctgtccga tcagcgtggc
      181 cgctggacca tcctgtactt ctacccggag gacgacacgc ccggctgcac caccgaggcg
      241 tgcgaattcc gcgaccggaa cgagacgatc cacgagcgtg gcgccgacgt ctggggtgtc
      301 agcccgcagg gtaccgccag caagcgcgcc ttccgcgaga agttcgagtt gccgttcacg
      361 ctcctggcgg acgagggcca ccacgcggcc gacgcctatg gcgcgtgggc cgagaagctc
      421 aactacggcc ggcgctacat gggcatcgtc cggtcgacct tcctgatcgc accggatggt
      481 cggattgccc gggtctggcc caaggtcaag gccgcgggtc acgcggcgga ggtcctggag
      541 gcgctcgacc ggttgagcgc cggtaccgcg tgagccggac agcgatggag gcttcgctcg
      601 tggggggaga cgagcgaagc ctcggacgtc aatgtacttc ccgggcatgc gcgctgcaac
      661 aggatcgttg gcgcacgggt cggagggtcc caccgcgatg accgaaccga cggcgcccgc
      721 cgaccatgcc tggcgccccg accgattcat gctgatcgtc gcccatccgg acgatgccga
      781 tttcggcccc gccggaacgg ccgcgcgctg gatcgacgcc ggctcccagg gctggctcgt
      841 ctgctgcacg agcggcgacc agggaggcga ggaccccgac gccgatccgc tcgagctggc
      901 cgccgtccgc gaggccgaac agcgcatcgc cgcggagatc atcggctatg cgggcgtcac
      961 gttcctgcac caacccgacg gcgcgctggc caacgacctc ccgctccgcg agcagctggt
     1021 ccgcgagatc cggaccttcc gcccggacgc ggtcctggcc acggacccgg acaccctctt
     1081 ctacaagggt ggcgggatca atcacaccga ccaccgggcc gccggcctgg ccgcggtgga
     1141 tgcggtctac ccggccgcgc gcaacccgat ggccttccca tcgctcgccc ggtcggggct
     1201 cgccgcgcac cgggttcgcc ggatgtacct gttctggtcg gatcgcgcgg acacctgggt
     1261 cgacgtcggg gccacgctcg agcgcaagat cgacgcgctg cgagcgcacg gcagccagat
     1321 ccacgatccc gacgcgctcg cgacgcgcat ccggagctgg gcggccgagg agggagccgg
     1381 gatcggcgcg gaggcggctg aggcgctccg cgtgatcgtc atcgacgacg accaggacga
     1441 aggcccggag tagccgccgc ggcgggccgc ccaggcgtgc gttgccgcct gcgctcctcg
     1501 ctcacgcacc tccagtgcgc tcgctccggt gctcggctgc gccttcgcct gggcggccgg
     1561 ccgcggcgaa cgcagtccca tagtgcgcga ggcgcgacgg cgtcaggcgt cctgcagcag
     1621 gagcgggcgg atcgtccccc actggttcca gagctcggcc aggccgtcgg cgcgccggcc
     1681 gagcatcgtg atcatctcgc cgagggtcag gtcgccggcg ttgacggcca ggtactcgtc
     1741 ggccgcgacg cggacctcgc tgaacagcgc ccggctggcc gcctcgtccg gccaatggcg
     1801 gacacgcatc ggatccaggc cggcatagcc gagcgccagc gacaggtcgc gctgggacgg
     1861 aattcgctcg tccagccagc cgccgcggcc gtcgaagcgg tagccgagcg atccaagcgc
     1921 atggacgatc tcgcgggcct ggccgagact gaacgggccc cagaacgggt ggtcgtgcgg
     1981 aaactccagg gccgacgatt cgatcgcgtc ggcgaggatg gcgtccacca gcctggtcag
     2041 cagctccttc cagcgtggcg ccccgtcggg atcgtccgcg gccagcgcgg ccacgagcgt
     2101 ggtcatcgcc gtccggtcgc cgcggagcag gcggaagatg cgcggcgtcg ccccggcctc
     2161 gatcgcgatg ccgagcactt cgtcggcgtc ggggcggtcg gcctcgggca gcgacgggag
     2221 cggcggcagg aggaaggcgc ccggatcgat cgcctcgcgc tcgtcgcact cggccacggc
     2281 tgcccgggcg gccacgcagg cggcttcggc cgtgtcggcc ccgatcctgg ccgcatcggc
     2341 ctcgaggccg agacgctcga gggtggcgcc gatggtcgcc gcggccgtcc gctcgcgggt
     2401 cgccgccgcg acggcttcgc gcgcctcggc gttgatccgg ttgatctcac gcagccagtc
     2461 ccgcgccgcc ccctcgacgg cctcggcgct ggccgccagg cggctggccg atcggaatgt
     2521 ccgctgcgcc tcctccttgg cggcgcgaac cgcccgcggg tcgcctcggg cggcggccgt
     2581 cgcggccgcg gcctcgtgcg tgtcgtacgc c
//
LOCUS       DATDDI010000428         2393 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_238307, whole genome shotgun sequence.
ACCESSION   DATDDI010000428 DATDDI010000000
VERSION     DATDDI010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238307"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..1303)
                     /locus_tag="VIU37_06140"
     CDS             complement(14..1303)
                     /locus_tag="VIU37_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013563.1"
                     /translation="MTRPLPTARPTIRRSGDRAVTSAGVLIAAGLLGLAGVSAVRTAL
                     GGTIWLPLHLALAGAAGTAIASVLPFFTTALGKAAPAAAPLRVAAVGLVAGGTLLAGY
                     GMTAGQPAVAAIGGASYIAGLAATVAAAFLPLRSALGFRIRLVELAYLVAIAEVALGV
                     ALATAMLAGWAPVAEAWGSLKPAHAWLNVFGFVTVVVAASLTHLAPTVAGGRIRPRRS
                     ASVALVCLLLGAPLVAVGFAAGWDPVGRAGAIVELLGGAALAVHGAAVQRDRGRWTSD
                     AGWHRFTGLGLVTAPGWLLVALAIASGRVLWLGPVPVAWDLRLLAVPLVAGWVGQVLV
                     ASWTHLVPAVGPGDQVRHAVQRRWLGRASTTRWLAWNAGVALWTVGLPAGADGLSLAG
                     GVTLGAALVASIGLLASAVVAGRAGPAMPAVGGAPPA"
     gene            complement(1320..1736)
                     /locus_tag="VIU37_06145"
     CDS             complement(1320..1736)
                     /locus_tag="VIU37_06145"
                     /inference="COORDINATES: protein motif:HMM:NF014173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY6013564.1"
                     /translation="MRLELTRRGDYAVRAMLALASEPSDGWLSVPAVSTAMSIPERFL
                     PRVMADLVRAGLVVGHRGRTGGYRLARPASSITLLDIIGAAEPDNDDRTCILRGGPCG
                     VDGRCAVHEAFTGARDAMLHRLGTTALSEVVRTGRR"
     gene            complement(1762..>2393)
                     /locus_tag="VIU37_06150"
     CDS             complement(1762..>2393)
                     /locus_tag="VIU37_06150"
                     /inference="COORDINATES: protein motif:HMM:NF028495.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEY6013565.1"
                     /translation="GLGLDLALRATKPAALHGDGGWIDFGPAGGSYYYSRTSMTASGT
                     LLLDGTPLAVTGSAWFDHQWGDFISVGGGGWDWFAVNLDDGTDLTLSLVRDADGTYPL
                     IYGTVVAPDGTVVHLDRHAFTVTTTGHWTSPATGATYPAGWAVDVPGLGLAVELAPTV
                     ADQELDTRATTGVVYWEGSQRVTATRHGVGLGGEAYVELTGYAPSATAP"
BASE COUNT          344 a          894 c          926 g          229 t
ORIGIN      
        1 aggcggctgc cggtcaggcc ggcggcgcac cgccgacggc gggcatcgcc gggcccgcgc
       61 ggccggcgac cacggcgctc gcgagcaggc cgatggacgc caccagggcg gctccgagag
      121 tcacgccccc ggccaggctc aggccgtccg cgccggccgg cagccccacc gtccacagcg
      181 cgacgcccgc gttccaggcg agccagcgcg tggtcgatgc acgccccagc catcgtcgct
      241 ggacggcatg gcgaacctgg tcgccgggcc cgaccgcggg gacgagatgc gtccacgagg
      301 cgaccaggac ctgcccgacc cagcccgcga ccaggggcac ggcgagcagt cggaggtccc
      361 aggcgaccgg gaccggtccg agccacagga cccgcccgga cgcgatggcc agcgcgacga
      421 gcagccagcc cggcgccgtg accaggccaa ggccggtgaa ccggtgccag cccgcgtcgg
      481 aggtccagcg gccgcgatcc cgctgcacgg ccgcgccgtg gaccgccagc gcggcgccgc
      541 cgaggagctc gacgatcgcg ccggcccgcc cgaccgggtc ccagccggcg gcgaacccga
      601 cggccacgag cggggcgccg agcaacaggc acacgagcgc gaccgaggcg ctccggcggg
      661 gccggatccg tccgcccgcg accgtcggcg cgagatgggt cagcgaggcg gccacgacga
      721 ccgtgacgaa cccgaacacg ttgagccagg cgtgggcagg cttcagggaa ccccaggcct
      781 cggccaccgg cgcccagcca gccagcatgg cggtggccag ggcgacaccg agcgcgacct
      841 cggcgatggc gaccaggtac gccagctcga ccagccggat ccggaatccg agcgccgagc
      901 ggagcgggag gaaggccgcg gcgaccgtcg cggcgagccc ggcgatatag gaggccccgc
      961 cgatcgcggc gacggccggc tggcccgccg tcatcccgta gccggcgagg agcgtgccgc
     1021 cggcgacgag gccgacggcc gcgacgcgga ggggtgccgc tgccggcgcg gcctttccga
     1081 gcgcggtcgt gaagaacggg aggacggagg cgatcgccgt cccggcggct ccggcgaggg
     1141 ccaggtgcag tggcagccag atcgtcccgc cgagcgcggt gcggacggcc gacacgccgg
     1201 cgagcccgag cagcccggcc gcgatgagca cgccggcgga ggtgacggcc cggtcgccgc
     1261 tgcggcggat ggtcggccgc gcggtcggaa gtgggcgggt catgccgggt ccggggtcgt
     1321 cagcgccgtc cggtccggac gacctcgctc agcgcggtgg tcccgagccg atggagcatg
     1381 gcgtcccggg caccggtgaa cgcctcatgg acggcgcaac gaccgtcgac cccgcagggt
     1441 ccgccccgca ggatgcaggt ccggtcgtcg ttgtcgggct cggccgcgcc gatgatgtcg
     1501 agcagcgtga tcgagctcgc gggacgggcc agccgatagc cgccggtgcg accccgatgg
     1561 ccgaccacca ggccggccct gacgaggtcg gccatgaccc gcgggaggaa acgctccggg
     1621 atcgacatcg ccgtgctcac cgccgggacg ctgagccatc cgtcggacgg ctcgctggca
     1681 agggccagca tcgcccggac cgcgtagtcg ccgcgtcgtg tcagctcgag tcgcacgggc
     1741 ggagtatcgc gcgaaacgcg gtcagggggc cgtggccgac ggggcgtagc cggtcagctc
     1801 gacgtacgcc tcgccgccga gcccgacgcc gtgccgcgtc gcggtgaccc gctgcgatcc
     1861 ctcccagtac acgacgccgg tcgtcgcgcg cgtgtcgagc tcctggtcgg cgacggtcgg
     1921 ggcgagctcg accgccaggc ccaggcccgg gacgtcgacg gcccagccgg ccgggtaggt
     1981 ggcgccggtc gcgggactcg tccagtggcc cgtcgtggtg acggtgaacg cgtgccggtc
     2041 gaggtggacg accgtgccgt ccggggccac gacggtcccg tagatcagcg ggtacgtgcc
     2101 gtcggcgtcg cggaccagcg acagcgtcag gtccgtgccg tcgtcgaggt tcaccgcgaa
     2161 ccagtcccag cctccgccgc cgaccgagat gaagtcgccc cactggtggt cgaaccaggc
     2221 cgacccggtc accgccagcg gcgtgccatc caggagcagc gtgccggacg cggtcatcga
     2281 cgtgcgcgag tagtagtacg agccaccggc cggcccgaag tcgatccagc cgccgtcgcc
     2341 atggagcgcc gcgggcttgg tggcccgcag cgccaggtcg agccccagcc cgc
//
LOCUS       DATDDI010000429         1561 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_696144, whole genome shotgun sequence.
ACCESSION   DATDDI010000429 DATDDI010000000
VERSION     DATDDI010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_696144"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1542)
                     /locus_tag="VIU37_06155"
     CDS             complement(<1..1542)
                     /locus_tag="VIU37_06155"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEY6013566.1"
                     /translation="MITPTGLPGSNLAGVQRTPTSAVAASATRMPALGLLDSTQLAAW
                     RSVAGLGRAALAVAGLDGGAGLASDHGIGSNDWVLAPSLSVTGGALLANDPHLGISMP
                     SVWYVNGLHCRVVDAACPYDVAGVSFPGVPGVVLGHNARIAWGATNVDPDVQDLVIEA
                     VDPANPADYLHEGRSIPFEVRHETIKVKGGASVDLEVRSTIHGPILNGVEDKLADAPP
                     MALRWTAALDTDHTIEAILGLNTAADFDQFRQSLSMYGAPSQNFVYADVDGHIGYQLP
                     GDIPIRSDPLDHGARPVRGDDGSGEWTGRIPFEDLPWQLDPPDGRIVSANNAAVDGDY
                     PRFIGQEWDPGYRAERILDLLDSYGADGLTVAELGAIQNDTAPLRARDIVPLIATATP
                     STEDGRTIASRIATWDGACGTDSLGCAAWNAWEYRIMRDVFDDELGSVLARDYAGSPF
                     SWVVLRQLLDDPHNRWWDDVSTADRTETADQIVGRAMDEAGAELRSSIGGPDHWSWGR
                     LHTATF"
BASE COUNT          219 a          535 c          583 g          224 t
ORIGIN      
        1 gaaggtggcg gtgtgcaggc ggccccacga ccaatgatcg gggccgccga tcgacgagcg
       61 gagctcggca ccggcctcgt ccatcgcccg gcccacgatc tggtcggcgg tctcggtacg
      121 atcggcggtg gagacgtcgt cccaccaccg gttgtgggga tcgtcgagga gctggcggag
      181 gaccacccag gagaacgggc tgccggcgta gtcgcgcgcc agtaccgatc ccagctcgtc
      241 gtcgaagacg tcgcgcatga tccggtactc ccacgcgttc caggccgcgc agcccaggct
      301 gtcggtgccg caggcgccat cccaggtcgc gatccggctg gcgatggtgc ggccgtcctc
      361 ggtcgacggg gtcgccgtcg cgatgagcgg cacgatgtcc cgggcgcgga gcggcgcggt
      421 gtcgttctgg atggcgccga gctccgctac ggtcagcccg tcggcgccgt agctgtcgag
      481 gagatcgagg atccgctccg cgcggtagcc gggatcccat tcctggccga tgaaccgcgg
      541 gtagtcgccg tcgaccgcag cgttgttggc gctgacgatc cggccgtctg gcgggtcgag
      601 ctgccagggc aggtcctcga acgggatccg gcccgtccac tcgccgctgc cgtcgtcgcc
      661 gcggaccggc cgggcgccgt ggtccagagg gtcggagcgg atcgggatgt cgcccggcaa
      721 ctggtagccg atgtggccgt ccacgtccgc atagacgaag ttctgcgacg gggcgccgta
      781 catcgacagg ctctggcgaa actggtcgaa gtcggccgcg gtgttgagcc cgaggatcgc
      841 ctcgatggtg tggtccgtgt cgagcgccgc ggtccagcgc aaggccatcg gcggcgcgtc
      901 ggcgagcttg tcctcgacgc cattcaggat ggggccgtgg atcgtcgatc ggacctcgag
      961 atccacgctg gcgccgccct tgaccttgat cgtctcgtgg cggacctcga acgggatcga
     1021 tcggccctcg tggaggtagt cggccgggtt ggccggatcg acggcctcga tgaccaggtc
     1081 ctggacgtcg ggatcgacgt tggtggcgcc ccacgcgatc cgggcgttgt gcccgaggac
     1141 cacgcccggc acgccgggga acgacacgcc ggccacgtcg tacggacagg ccgcgtcgac
     1201 gacccggcag tgcagaccgt tcacgtacca gaccgacggc atcgagatgc cgagatgcgg
     1261 gtcgttcgcg agcagggcgc cgccggtgac cgacagggac ggcgccaaga cccagtcgtt
     1321 cgaaccgatc ccgtggtccg aggccaggcc ggcaccaccg tcgaggccgg ccaccgcgag
     1381 cgccgcccgg ccgagccccg cgaccgatcg ccaggccgcc agctgcgttg aatcgagcag
     1441 cccgagcgcc ggcatgcgcg tcgcggacgc tgccaccgcg ctcgtcggag tgcgctggac
     1501 tccggcgagg ttcgagccgg gcagcccggt cggcgtgatc accggggcgc cgtcgcggta
     1561 c
//
LOCUS       DATDDI010000430         4335 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_466971, whole genome shotgun sequence.
ACCESSION   DATDDI010000430 DATDDI010000000
VERSION     DATDDI010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466971"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VIU37_06160"
     CDS             <1..422
                     /locus_tag="VIU37_06160"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6013567.1"
                     /translation="ASERGRRHAASWDEDLDGNVATPDLITARQVLRWATLDGAKVAG
                     IADRAGSITPGKKADLVIIDGHAVNVAPIIDPVGAVVCAADVSNVDTVMVNGVILKRG
                     GKLVADLTTPRQKVMASRDYLVSQVPTQEGWLTQVPS"
     gene            complement(558..1550)
                     /locus_tag="VIU37_06165"
     CDS             complement(558..1550)
                     /locus_tag="VIU37_06165"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEY6013568.1"
                     /translation="MSGVLVFVEHAAGEVDRLSREALILAGRVAASAGGQVEAVLFGS
                     GADGALATLGGAGVATAHLVDDDRLDAYAPQAWASAIAGLIAARSPAAVIAGGSDRGQ
                     EGLAHVAARTGRPMVANVVEVAPGEPWRLTRQRWAGSLLEDAELTTDVALMTVAPHVI
                     AVDDAGAAAAAGSSPVVARFAPEVIDRDLLGRVTGREAPAAGGISLTDAKVVVGGGRG
                     VGSAEGFGELEELAALLGGAVGGSRVVTSAGWRPHSDQIGQTGLRIAPDLYIACGISG
                     AIQHIVGCKAAKRILAINTDPDSPIMAAADYAVIGDLHQVVPAITAEIRRRTGT"
     gene            complement(1547..2320)
                     /locus_tag="VIU37_06170"
     CDS             complement(1547..2320)
                     /locus_tag="VIU37_06170"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEY6013569.1"
                     /translation="MEVLVCVKRVPATGGRIVLTPDGQEIDTRYLGFTISPHEECAVE
                     EAVRIVEAGGGSSTVLTLGPAAAEEQLRDAMAVGIDRAILLETDGREFDPIATADAIV
                     ETVRAQEAARGPFDLILFGNEAADTGDFQVGIRVAVALDRPVVTGIKSLALRDGTAHA
                     RREATGGGWETYEVPLPAVVSVKEGLNLPRYPSVPGRLRARRKEVERAQPQAPGHGVV
                     KLGLRLPEESGAQVEILGRGPEAAPAVVDLLVRIGVLVS"
     gene            complement(2332..>4335)
                     /locus_tag="VIU37_06175"
     CDS             complement(2332..>4335)
                     /locus_tag="VIU37_06175"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013570.1"
                     /translation="DVDPSPRSGRRVRGVRTTRGDIQAETVVIACGIWSPRIARMAGA
                     KIPLTPAVHQMISVGPVPLLMGTEGEIKYPIVRDMDTNMYERQHGTGFEIGSYAHRAI
                     LMDPDDIPSIEASALSPTMLPFTQDDFDPQLEDALELFPSIVGDEKAGVKLAINGLLS
                     LTPDGNPIIGETPEVKGLWSVAAIWIKEAPGIAKCVAEWMTHGTPETDPHGSDIARFY
                     DHHKTDQHIRARTTEGYNKTYGIVHPMEQWASNRDIRLSPFNARQRALGAVFFEAAGW
                     ERPFWYGANEALLAEYGDRVMPRTAEWESRWWSPIINAEHLAMRDRAAMVDLSAFAIF
                     DVTGPGACKYLEGLCVNRIDVAPGRTIYTPLLNAAGGILADLTIMRLAHDRFRVVTGG
                     GLGMRDKKLFVDALPEDGSAQLHDATSQWTTIGLWGPRARDILAGVTAADVSHAGFPF
                     LTTKTVDIDGVRTLASRISYVGELGWEIYVPIEQGLRVWDALWGAGQPHGMVAAGIGT
                     YAVTARLEKGYRAHGAELELDFDLVEAGMARPTVKDAGFIGKAAYLEQRSRRPAAVLC
                     TLTVDDPTSSSGVKRYMVGREPILTPDGRPLVDAKGRRSYVTSAGSGPSVGKHLLMAY
                     LPPEQAVVGTRLAVEYFGERYPVTVAVAGATPLFDPDNARIRS"
BASE COUNT          609 a         1579 c         1533 g          614 t
ORIGIN      
        1 tcgcctccga gcgcggccgg cggcatgcgg cctcctggga cgaggacctc gacggcaacg
       61 tcgcgacacc cgacctgatc acggcccgcc aggtgctccg ctgggcgacg ctcgacggcg
      121 ccaaggtcgc gggcatcgcc gaccgggcgg gctcgatcac gcccggcaag aaggccgacc
      181 tcgtgatcat cgacggccac gccgtcaacg tcgcgccgat catcgacccg gtcggcgcgg
      241 tggtctgcgc ggccgacgtc tcgaacgtcg acaccgtcat ggtcaacggc gtgatcctca
      301 agcgcggcgg caagctcgtc gcggatctga ccacgccgcg gcagaaggtg atggcatccc
      361 gcgactacct ggtcagccag gtcccgaccc aggaaggctg gctcacccag gttccgagct
      421 gatccgggaa cgaccacgtg ccgccggatg gcgtgggagg ccaaggcgcc gggcaaggag
      481 ggagcgagcg cactccgtgt gcgtgagcga agcgacgagc ccggcaacgc gggcatctgg
      541 cgccagccgg cggcgcgtca ggtacctgtg cggcgtctga tctcggccgt gatggccggc
      601 acgacctggt gcaggtcacc gatcacggcg taatcggcgg cggccatgat cggtgagtcc
      661 gggtcggtgt tgatggccag gatccgcttg gccgccttgc agccgacgat gtgctggatc
      721 gcgccactga tcccgcacgc gatgtagagg tcgggcgcga tccggagccc ggtctggccg
      781 atctggtcgc tgtgcggccg ccagccggcg ctcgtcacga cgcgcgaccc gccgaccgcg
      841 cccccgagca gcgcggcaag ctcctcgagc tctccgaagc cttcggcact gcccacgccg
      901 cgaccaccgc ccaccaccac cttggcgtcg gtcagcgaga tgccgccggc ggccggggcc
      961 tcacgcccgg tgacccggcc gaggagatcg cggtcgatca cctcgggggc aaaccgcgcc
     1021 acgacgggag acgagccggc cgcggctgcg gcgcccgcat cgtcgaccgc aatcacgtgc
     1081 ggcgcgacgg tcatgagcgc gacatccgtg gtcagctcgg cgtcctcgag caggctgccg
     1141 gcccagcgct ggcgggtcag ccgccagggc tcgccgggcg ccacctcgac cacgttggcg
     1201 accatcgggc ggcccgttcg ggccgcgacg tgggccaggc cctcctggcc ccggtcgctc
     1261 ccgccggcaa tgacggcggc tggtgaccgg gcggcgatca gcccggcgat cgccgaggcc
     1321 caggcctgcg gggcgtaggc gtcgagccga tcgtcgtcca cgagatgggc cgtcgcgaca
     1381 cccgcgccgc cgagggtcgc cagggcaccg tccgccccgc tgccgaacag gacggcctcg
     1441 acctgcccac cggcggacgc cgccacgcgg ccggccagga tcagcgcctc gcgcgacagc
     1501 cggtccacct cgccggccgc gtgctcgacg aagacgagga cgccgctcac gagacgagca
     1561 ccccgatgcg gacgaggagg tccacgacgg ccggtgccgc ctccggccca cggccgagga
     1621 tctcgacctg ggcgccgctc tcctcgggca gtcgcaggcc aagcttgacc acgccgtgcc
     1681 ccggtgcctg cggctgggcg cgctcgacct ccttgcgcct ggcacggagc cggcccggga
     1741 ccgacgggta acggggcagg ttgagtccct ccttgaccga tacgaccgca ggcagcggga
     1801 cctcgtaggt ctcccacccg ccgccggtcg cctcgcgtcg cgcgtgcgcg gtgccgtcgc
     1861 gcagcgccag cgacttgatg ccggtcacga ccggccggtc gagcgcgacc gcgacccgga
     1921 tcccgacctg gaagtcgccc gtgtcggctg cctcgttccc gaacaggatc aggtcgaacg
     1981 ggccgcgggc cgcctcctgg gccctgacgg tctcgacgat tgcgtcggcc gtcgcgatcg
     2041 ggtcgaactc gcgcccatcg gtctcgagca ggatcgcccg gtcgatcccg acggccatcg
     2101 catcgcgaag ctgctcttcc gcggccgccg gccccagggt cagcacggtc gacgagccac
     2161 cgcccgcctc cacgatccgg acggcctcct cgaccgcgca ctcttcgtgg ggactgatcg
     2221 tgaagccgag atagcgggtg tcgatctcct ggccgtccgg ggtcaggacg atccggccgc
     2281 cggtcgcggg cacgcgcttg acgcagacga ggacctccat cacgcccgcc gtcagctgcg
     2341 gatgcgggcg ttgtcgggat cgaacagcgg cgtcgcgccg gctaccgcga ccgtcaccgg
     2401 gtagcgctcg ccgaagtact ccacggcgag ccgggtcccc accacggcct gctcgggtgg
     2461 caggtacgcc atcagcaggt gcttgccgac cgacggcccg gatccggcgc tggtcacgta
     2521 cgagcggcgc cccttcgcgt cgacgagtgg ccggccatcg ggcgtcagga tcggctcgcg
     2581 accgaccatg tagcgcttga ccccgctcga cgatgtcgga tcgtccaccg tcagcgtgca
     2641 caggacggcc gccggccgtc gcgaccgctg ctcgaggtac gcggccttcc cgatgaagcc
     2701 ggcgtccttg accgtgggcc gggccatccc cgcctcgacc aggtcgaagt cgagctcgag
     2761 ctcggcgccg tgcgcgcggt agcccttctc gagccgggcg gtcacggcgt acgtgccgat
     2821 gcctgcggcg accatgccgt gcggctgacc tgccccccag agcgcgtccc agacgcgcag
     2881 cccctgctcg atcgggacgt agatctccca gccgagctcg ccgacgtagc tgatccgcga
     2941 ggcgagcgtc cggaccccgt cgatgtcgac ggtcttcgtg gtcaggaacg ggaagccggc
     3001 gtggctgacg tcggcggccg tcaccccggc caggatgtcg cgcgcccgcg gcccccacag
     3061 cccgatcgtc gtccactggc tggtcgcgtc atggagctgc gccgagccgt cctctggcag
     3121 cgcgtcgacg aagagcttct tgtcgcgcat gcccaggccg ccaccggtga ccacgcggaa
     3181 ccggtcgtgg gccagccgca tgatcgtcag gtcggccagg atcccgccgg cggcgttgag
     3241 cagcggcgtg tagatggtcc gtcccggcgc cacgtcgatc cggttgacgc acaggccctc
     3301 caggtacttg caggcgcccg ggccggtcac gtcgaagatc gcgaaggcgg acaggtcgac
     3361 catggcggcg cggtcgcgca tcgccaggtg ctcggcgttg atgatcggcg accaccagcg
     3421 cgattcccac tcggcggtgc gcggcatcac ccggtcgccg tactcggcga ggagggcctc
     3481 gttggcgccg taccagaacg gtcgctccca gccggccgcc tcgaagaaga ccgcccccag
     3541 ggctcgctgg cgcgcgttga acggcgacag ccggatgtcg cggttagacg cccattgctc
     3601 catcgggtgg acgattccgt aggtcttgtt gtagccctcg gtggtccggg ccctgatgtg
     3661 ctggtcggtc ttgtggtggt cgtagaagcg ggcgatgtcg gagccgtgcg ggtcggtctc
     3721 cggcgtgcca tgggtcatcc actcggcgac gcacttggcg atcccgggcg cctccttgat
     3781 ccagatcgcc gcgaccgacc agagcccctt cacctcaggc gtctcgccga tgatcgggtt
     3841 cccgtccggc gtcagagaga gcaggccgtt gatcgccagc ttcacgccgg ccttctcgtc
     3901 accgacgatc gacgggaaca gctcgagcgc gtcctcgagc tgcgggtcga agtcgtcctg
     3961 ggtgaacggc agcatcgtcg gcgacagcgc ggacgcctcg atcgacggta tgtcgtcggg
     4021 gtccatcagg atggcccggt gcgcgtacga gccgatctcg aagcccgtcc catgctggcg
     4081 ctcgtacatg ttggtgtcca tgtcgcgcac gatcgggtac ttgatttcgc cctcggtgcc
     4141 catgaggagc gggaccggac cgacgctgat catttgatgg accgcggggg tgagcggaat
     4201 cttggcgcct gccatccggg cgatgcgagg gctccagatg ccgcaggcga tgaccaccgt
     4261 ctcggcttga atgtcgccgc gggtggtacg cacgccgcgc acgcgccgtc ccgagcgggg
     4321 cgagggatca acgtc
//
LOCUS       DATDDI010000431         2649 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_363175, whole genome shotgun sequence.
ACCESSION   DATDDI010000431 DATDDI010000000
VERSION     DATDDI010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363175"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1137
                     /locus_tag="VIU37_06180"
     CDS             <1..1137
                     /locus_tag="VIU37_06180"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY6013571.1"
                     /translation="IRRLADDFLDRPASVQVAPRNQATELVTQVVHPVDRDRKRELLS
                     QLIKSGRIDQALVFTRTKHGANRLATPLEHDGILATAIHGNKSQPQSVRALADFKAGR
                     FTVLVATEVAARGIDIDALPHVVNFELPMVPEDYVHRIGRTGRAGVDGDAVSLVCVDE
                     LKLLREIERVLGHPIPSETIEGFEPDPRIRPEPILRGGLGGVRPSGSGRIAAGTSRGA
                     RGPMGGARHQPMPAHRGPGNSRPPFTPPFASRQPAPDSRATGRTSPAFESGPYRGQRP
                     SGAAQPGNAMPFAGAPRSVGPTRAPHSGGGHASPRRPGQGIGNQPMGRPGQAARFGQP
                     GGARPAGAPGRSNPPRPAGAPWAESSRQHLPGERRVRLGGRRGG"
     gene            1196..2473
                     /locus_tag="VIU37_06185"
     CDS             1196..2473
                     /locus_tag="VIU37_06185"
                     /inference="COORDINATES: protein motif:HMM:NF012551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HEY6013572.1"
                     /translation="MTNDTPDPIDAGIRRYRSAEATVRILGPDGPLAGHAVTVGQRTH
                     AFRFGCTGFEQIELANAELDDAATERAERAAADWLDLYNFATLPFYWGRFEPVRGRPD
                     TRRLRAAARWFVDRGVAVKGHPLCWHSVGADWLLELTDDEIAEAQLARIRRDVADFTG
                     LIDSWDVINEVVIMPIFAKYDNGVSRMARKLGRVGIVRATFDAARETNPGATLLLNDF
                     DMSADYEHLIEDCLEAGIRIDALGLQSHMHQGYWGEAKTRDVLERFARFGLPIHFTES
                     TLVSGQLMPPEIVDLNDFQVDAWPSTPEGEARQADEIVRHYRTLLAHPAVEAITWWEI
                     QDGGWLGAPTGLIRADGTRKPAFEALRGLIKGDWWLSPTPMVTDETGSIRFDGFLGDY
                     VLSIGGDAVPFRVGAAGPAEIDVRVGHESGRRD"
BASE COUNT          369 a          966 c          953 g          361 t
ORIGIN      
        1 atccggcggt tggccgacga cttcctcgat cggccggcgt cggttcaggt cgcaccccgg
       61 aaccaggcga ccgagctcgt gacgcaggtc gtccacccgg tcgatcgcga ccgaaagcgc
      121 gagctgctca gccagctgat caagagcggg cggatcgacc aggccctggt tttcacccga
      181 accaagcacg gggcgaaccg cctcgctacg ccgctcgagc acgacggcat cctcgccacg
      241 gccatccacg gcaacaagag ccagccgcag agcgttcgcg cgctggccga cttcaaggcc
      301 ggccggttca cggtgctggt cgccaccgag gttgcggcgc gcgggatcga catcgacgcc
      361 ctgccgcacg tcgtgaactt cgagctgccg atggtgcccg aggactacgt ccatcggatc
      421 gggcggaccg ggcgcgccgg cgtggatggc gacgccgtgt cgctggtctg tgtcgacgag
      481 ctcaagctgc tccgtgagat cgagcgcgtg ctggggcacc ccatcccgtc cgagacgatc
      541 gagggcttcg agccggaccc gcgcatccgc ccggagccga tcctgcgggg cgggctcggg
      601 ggcgtccggc cgtcgggtag cggacggatc gccgccggca ccagccgcgg tgcgcgcggc
      661 ccgatgggtg gtgcgcggca ccagccaatg cccgcgcatc gcggcccggg caattcccgg
      721 ccgccgttca cgcccccctt cgcgtcgcga cagccggccc ccgattcgcg cgccacgggc
      781 cggaccagcc cggcgttcga gtccgggccg tatcgcgggc agcggcccag tggcgcggcc
      841 cagcccggga acgcgatgcc gttcgccggt gcgccgcgat ccgtcggtcc caccagggcg
      901 ccacattcgg gcggcggcca cgcgtcgccg cgtcgacccg gtcaggggat cgggaatcag
      961 cccatgggcc ggcccggaca ggcggcgcgc ttcggccagc cgggcggagc acgaccggcc
     1021 ggcgcccccg gacgctcgaa cccaccccga ccggccggag cgccctgggc cgagtcgtcc
     1081 aggcagcacc tgcccggcga gcggcgggta cggctcggcg gtcgccgcgg ggggtgacgt
     1141 tccagggcgc ccgttgtggg ttgcccgggc gggccgcgtg tgccaccttc gtggcatgac
     1201 gaacgacacg cccgacccga tcgacgccgg gatccgccgc taccgctcgg ccgaggccac
     1261 cgtccggatc ctcgggccgg acggaccgtt ggccggacac gcggtgaccg tggggcagcg
     1321 gacccacgcc ttccgattcg gctgcacggg tttcgagcag atcgagctcg cgaacgcgga
     1381 gctcgacgac gcggccacag aacgcgcgga gcgagccgcg gccgactggc tcgatctcta
     1441 caacttcgcg acgctgccgt tctactgggg ccgcttcgag ccggtccgcg gccgcccgga
     1501 cacccggcgc ctgcgcgcgg cggcgcgctg gttcgtcgat cggggcgtgg ccgtcaaggg
     1561 acacccgttg tgctggcaca gtgtcggtgc ggactggttg ctcgagctca ccgatgacga
     1621 gatcgccgag gcgcagctgg ctcggatccg ccgcgacgtg gccgacttca cggggctgat
     1681 cgacagctgg gacgtgatca acgaagtcgt gatcatgccg atcttcgcca agtacgacaa
     1741 cggcgtctcg cggatggcgc gcaagctcgg ccgtgtcggg atcgtccgcg ccaccttcga
     1801 tgccgctcgc gagacgaacc ccggcgcgac cctgctcctc aacgacttcg acatgtccgc
     1861 ggactacgag catctcatcg aggactgcct cgaggcgggc atccggatcg acgcgctcgg
     1921 gctccagtcg cacatgcacc aggggtactg gggcgaggcg aagacccggg acgtcctgga
     1981 gcggttcgcg cgcttcgggc tgcccatcca cttcaccgag agcaccctcg tgtccggaca
     2041 gctcatgccg cccgagatcg tcgacctcaa cgacttccag gtcgacgcgt ggccgagcac
     2101 gccggagggc gaagcccgtc aagccgacga gatcgtgcgc cactaccgga cgctgctcgc
     2161 gcacccggcc gtggaggcga tcacctggtg ggagatccag gacggtggct ggctgggcgc
     2221 cccgaccggg ctgatccgcg cggacggcac ccggaaaccg gcgttcgagg cgttgcgagg
     2281 gctgatcaag ggcgactggt ggctgtcacc gacgccgatg gtcaccgatg agacggggag
     2341 catccggttc gacggcttcc tcggcgacta cgtcctgtcg atcggcggcg acgccgtgcc
     2401 gttccgcgtc ggggccgcgg gcccggccga gatcgacgtc cgcgtggggc acgagtcggg
     2461 ccgccgggac tagtttcgcg cccggccgcg gggtactatc gcagcgtccc gtggggccgg
     2521 cctcgtctcg ccggcagcgg tccatcgtcc agggccgccc ccgcgcccgc ccgtcgctgt
     2581 tccgggggtc caaccgctgc ccatggcgct catcgccctc gatcggctga ccaagcagtt
     2641 tcccggtgt
//
LOCUS       DATDDI010000432         1668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_342374, whole genome shotgun sequence.
ACCESSION   DATDDI010000432 DATDDI010000000
VERSION     DATDDI010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342374"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VIU37_06190"
     CDS             complement(<1..282)
                     /locus_tag="VIU37_06190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEY6013573.1"
                     /translation="MDGPLTPPSDKPAATRPVARERQAFLPSDVDPTVFDETFLRQLE
                     RLLVLMRSPVRGGLKGGRRSVKRGQSVEFADYRDYTLGDDLRQLDWNVYA"
     gene            complement(311..1327)
                     /locus_tag="VIU37_06195"
     CDS             complement(311..1327)
                     /locus_tag="VIU37_06195"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY6013574.1"
                     /translation="MNASSSTDQAIPQLAPEAFAERAEAIEREVGRVIVGQTALVRQT
                     LTGLLANSHVLLEGVPGLGKTMLVRTIADVIDCAFNRIQFTPDLMPADITGTNILIEE
                     GGQRVFRFQPGPVFANLVLADEINRATPKTQSSLLEAMQEHQVTVARQRFPLDSPFFV
                     LATQNPLEMEGTYPLPEAQLDRFLFKVMVPFPSEEDLVAIMDRTTGNEVVTPAKVCTG
                     AEIVEMQQLARAVPIAPHVTAYAVSVLAATHPDQPRAPELVRDYVRYGGSPRGAQALV
                     TGGKIYALLDGRFNVSVDDIRAVALPSLRHRIILNFEGEAEGITTEAVIRSILDAVVA
                     PTVE"
     gene            complement(1342..>1668)
                     /locus_tag="VIU37_06200"
     CDS             complement(1342..>1668)
                     /locus_tag="VIU37_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013575.1"
                     /translation="FGGNRTVGTPTGANRASQLGADLSSIYAPFDRLGKPGDPSYVAG
                     TGGDGQTQQGNQTGSGTNNGVLTPYQQVFADFQRYAQVSLDRGYIPLSIKDYVKNYFS
                     SLDPSR"
BASE COUNT          245 a          538 c          619 g          266 t
ORIGIN      
        1 ggcgtagacg ttccagtcga gctgccggag atcgtcgccg agcgtgtagt cgcggtagtc
       61 ggcgaactcg accgactggc cacgcttgac gctccgccgg ccgcccttga ggccgccccg
      121 gaccggcgac cgcatcagga ccagcagtcg ctcgagctgg cgcaggaacg tctcgtcgaa
      181 gacggtcggg tcgacgtcgc tcgggaggaa cgcctggcgc tcgcgcgcga ccggccgggt
      241 cgcggcaggc ttgtcgctcg ggggcgtcag cgggccgtcc atcgcccagg tcgccgggtc
      301 gtgacgccgg ctattcgacg gtcggcgcga cgaccgcgtc gaggatcgag cggatgaccg
      361 cctcggtcgt gatcccttcc gcctcgccct cgaagttgag gatgatgcga tggcggagcg
      421 agggcagggc gaccgcccgg atgtcgtcga ccgagacgtt gaaccggccg tcgagcaggg
      481 cgtagatctt gccgccggtc accagggcct gggcgccgcg cggcgagccg ccgtagcgca
      541 cgtaatcgcg gacgagctcc ggcgcccggg gctggtcggg gtgggtggcg gccaggacgc
      601 tgaccgcgta ggccgtcacg tgcggggcga tcggcacggc ccgggccagc tgctgcatct
      661 cgacgatctc cgcgccggtg cagaccttgg ccggggtgac gacctcattg ccggtcgtgc
      721 ggtccatgat cgcgaccagg tcctcctcgg acgggaacgg gaccatgacc ttgaacagga
      781 agcggtcgag ctgggcctcc ggcaggggat acgtgccctc catttcgagc gggttctggg
      841 tcgccagcac gaagaacggc gaatcgagcg ggaaccgttg ccgggcaacc gtgacctggt
      901 gctcctgcat cgcctcgagg aggctggact gggtcttggg ggtcgcccgg ttgatctcgt
      961 cggcgagcac caggttggcg aacaccggac ccggctggaa ccggaagacg cgctggccgc
     1021 cttcctcgat caggatgttc gtcccggtga tgtcggccgg catcaggtcc ggcgtgaact
     1081 ggatccggtt gaacgcgcag tcgatcacgt cggcgatcgt gcgcaccagc atggtcttgc
     1141 ccaacccagg tacgccctcg agcaggacgt ggctgttggc gagcagcccg gtcagggtct
     1201 ggcggacgag cgcggtctgg ccgacgatca cccgaccgac ctcgcgctcg atcgcctcgg
     1261 cgcgttcggc gaaggcttcc ggggcgagct gaggaatcgc ctggtctgtc gagctcgacg
     1321 cgttcatgga tgggcctccg gtcagcgtga cggatcgagg gagctgaagt agttcttgac
     1381 gtagtccttg atcgagagcg ggatgtaccc acgatcgagc gacacctgcg cgtagcgctg
     1441 gaagtccgca aagacctgct ggtacggcgt caacacgccg ttgttcgtgc ccgagccggt
     1501 ctggttgccc tgctgcgtct ggccgtcgcc gcccgtcccg gcgacgtacg acggatcgcc
     1561 gggcttgccc agccggtcga acggagcgta gatcgacgac aggtcggcac cgagctggga
     1621 ggctcggttg gcgccggtcg gcgtgcccac ggtgcggttg ccaccgaa
//
LOCUS       DATDDI010000433         3519 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_404961, whole genome shotgun sequence.
ACCESSION   DATDDI010000433 DATDDI010000000
VERSION     DATDDI010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3519
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404961"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..2254)
                     /gene="recG"
                     /locus_tag="VIU37_06205"
     CDS             complement(80..2254)
                     /gene="recG"
                     /locus_tag="VIU37_06205"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF008168.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEY6013576.1"
                     /translation="MARATIPAPAPGDPVALLSTPLARSGLTAGALLRRAGIRLGFYT
                     VGDLLFHLPRRYDDLREMRRLGDLLWTEDGTVVSARVRVADVKVEPTFRRRVQRTIAR
                     LEDETGSVDATWFGRRFIERRLRVGGEIVVSGRIKHFGRRLTFDNPEFQAVVEDAEVL
                     HAGRIVPVYPLTAGLTAARLRLAIREALDKAGHAYPEYLPEPVRTGEALVPIARAIEE
                     AHYPGSFEGRDAALRRLAFDELLALQLGMVARRRQRGREAAPLLEVDDAADATIRASI
                     VASLTSKVGRPVELTADQATAMTAIRGDLARPTPMLRLLQGDVGSGKTAVAAYALAAT
                     ARAGLQGALLAPTDLLARQHLDTIGGLLDGLGLGVTLLTGSLPADTKAKATEAIRSGQ
                     AGVVVGTHALIQESVSFRDLGLVVIDEQHRFGVDQRGQLEAKAGGRVPHVLLMTATPI
                     PRTLGQVLYADLDVTDLRTPPEGRVPIKTGIKRPTDLESTWAYVRKEAAAGHRIFVVV
                     PLIEESDGADDGAVAAESEAVRLKALLAPLRVGMVHGRMKPAARDAEMGRFRDGELDV
                     LVGTTVVEVGVDVPAATMMIIEGADRFGLAQLHQLRGRVGRGLVDSFCVLVSDSADEV
                     AQARLKAVAELRDGFELAERDFELRREGDVLGLVQSGLPQLRVASLQDPAHRELAVRA
                     RAHAEAMLDAAGELRPPQPALTAELETGWLRRVASGEPASGA"
     gene            complement(2256..>3519)
                     /locus_tag="VIU37_06210"
     CDS             complement(2256..>3519)
                     /locus_tag="VIU37_06210"
                     /inference="COORDINATES: protein motif:HMM:NF025064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004371 - glycerone kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEY6013577.1"
                     /translation="EAATAAVTAAERDPDIESVLGATVEAAERSVARTPSLLAILREA
                     GVVDSGGQGLYRLLQGAHRYVADRSAGGARERARPAAGSRVSTLVAHADEGFGYETMF
                     LLQPSHLAALDVDAIRDHLESIGDSVLVAGDARALKVHVHNDRPDLVIGYGLTMGALS
                     RISVENLDHQARDVRETRAAEFTGLPSESVAGSNGASGPVEVPALGVLAVAAGDGLAA
                     IFRDFGVAGVVHGGQSANPSTGELLGAIQGVNAREVIVLPNNPNVVLAARQVASLSDR
                     PVAVVPTRNAAEGFAALLALDPHLDAATNASQMTEAARAIQTLVVTEAVRDATIGGRK
                     VKRGQTIALDPDDGLVAADNDREKCVLAAVASLTAGFELVTLFYGDGADLAEAEAMAH
                     RIGAVLPAVEVEVRHGGQPYYRYLIAAE"
BASE COUNT          464 a         1306 c         1288 g          461 t
ORIGIN      
        1 cccatcggcc gtgtcccggg tcccggagcc tggagccgga tcccgcgagc ggagccggcg
       61 atgacccggc cggcgtcggt catgcgccgc tcgccggttc gcccgacgcg acccgccgga
      121 gccagccagt ctcgagctcg gccgtcagcg cgggctgcgg cgggcggagc tcgccggctg
      181 catcgagcat cgcctcggcg tgggcacggg cgcggacggc cagctcccgg tgtgccgggt
      241 cctggagtga cgccacgcgg agctgtggca ggccgctctg caccagcccg agcacgtcgc
      301 cctcacggcg gagctcgaag tcgcgctccg ccagctcgaa gccgtcgcgc agctcggcga
      361 ccgccttgag ccgggcctgg gcaacctcgt ccgccgaatc cgagacgagc acgcagaagg
      421 agtccaccag gccccggccc acccggccgc gcagctggtg gagctgggcg aggccgaacc
      481 gatcggcccc ctcgatgatc atcatcgtcg cggcgggcac gtccaccccg acctcgacga
      541 cggtggtgcc gacgaggacg tcgagctcgc cgtcccggaa ccggcccatc tcggcgtccc
      601 gcgcggccgg cttcatccgg ccgtggacca tgccgacccg gagcggcgcg aggagcgcct
      661 tgagccggac ggcctcgctc tcggccgcca ccgcgccgtc gtcggcgccg tcgctctcct
      721 cgatcagcgg gacgaccacg aagatccggt gtccggcggc tgcctccttg cggacatacg
      781 cccacgtgct ctcgagatcg gtcggacgct tgatgccggt cttgatcggg acgcggcctt
      841 cgggcggcgt ccgcaggtcg gtgacgtcga ggtccgcgta gagcacctgg ccaagcgtcc
      901 gcgggattgg ggtcgcggtc atcagcagga cgtgcgggac gcgcccgccg gccttggcct
      961 cgagctggcc acgctggtcg accccgaagc ggtgctgctc gtcgatcacg accaggccga
     1021 ggtcgcggaa cgacacggac tcctggatca gcgcgtgggt cccgaccacg acgccggcct
     1081 ggccggagcg gatcgcctcg gtcgccttgg ccttggtgtc tgccggcagc gagccggtca
     1141 gcagcgtcac gccgagcccg agcccgtcga gcagcccgcc gatcgtgtcg aggtgctggc
     1201 gcgcgagcag gtccgtgggc gccaggagcg ctccctggag cccggctcgc gccgtcgccg
     1261 ccagggcata cgccgcgacc gcggtcttgc ccgacccgac gtcgccctgg aggagccgga
     1321 gcatcggcgt cggcctggcc aggtcgccgc ggatcgcggt catggccgtc gcctggtcgg
     1381 cggtcagctc gaccggccgc ccgaccttcg acgtgagcga cgccacgatc gacgcccgga
     1441 tcgtcgcgtc ggcggcatcg tcgacctcga gcagcggcgc cgcctcgcgt ccgcgctgtc
     1501 ggcggcgggc gaccatcccg agctgcaggg cgagcagctc gtcgaaggcg agccggcgca
     1561 gggcggcgtc gcgaccctcg aacgagcccg ggtagtgggc ctcctcgatg gcccgagcga
     1621 tcgggacgag tgcctcaccg gttcggaccg gctccggcag gtactccggg taggcatggc
     1681 cggccttgtc gagtgcctcg cggatggcca gtcgcagccg ggcggcggtg aggcccgcgg
     1741 tcaacgggta gaccggcacg atccggccgg catggagcac ctcggcgtcc tccacaaccg
     1801 cctggaactc cgggttgtcg aaggtcagcc gccgtccgaa gtgcttgatc cggcccgaga
     1861 ccacgatctc gccaccgacg cgcaaccggc gctcgatgaa ccggcggccg aaccaggtgg
     1921 cgtcgacgct cccggtctcg tcctcgagtc gcgcgatcgt gcgctggacg cgacgccgga
     1981 aggtcggctc caccttcacg tccgcgaccc ggacgcgcgc cgacacgacg gtcccgtcct
     2041 ccgtccagag caggtcgccc agccggcgca tctcgcggag gtcgtcatag cggcgcggca
     2101 ggtggaagag gagatcgccg accgtgtaga aacccagccg gatcccggcc cgccgcagga
     2161 gcgccccggc cgtgagcccc gaccgcgcca gcggggtcga cagcagcgcc accgggtcgc
     2221 ccggggcggg agccggaatc gtcgccctgg ccacgctatt cggcagcgat caggtaccgg
     2281 tagtacggct ggccgccgtg ccggacttcg acctcgacgg ccggcagcac cgctccgatc
     2341 cggtgcgcca tcgcctcggc ctcggcgagg tccgcgccgt cgccgtagaa cagcgtgacc
     2401 agctcgaagc cggcggtcag cgacgccacc gccgccagca cgcacttctc ccggtcgttg
     2461 tcggcggcga cgaggccgtc gtcgggatcg agggcgatgg tctgaccgcg cttcaccttg
     2521 cgcccaccga tggtcgcgtc gcggaccgcc tccgtgacca cgagggtctg gatcgcccgg
     2581 gcggcctcgg tcatctggct ggcgttcgtc gcggcgtcga gatgcgggtc gagcgcgagg
     2641 agggcggcga agccctcggc cgcgttccgc gtcgggacca cggcaaccgg gcggtccgac
     2701 agcgaggcga cctgccgcgc ggcgagcacg acgttgggat tgttcgggag gacgatgacc
     2761 tcgcgggcgt tgacgccctg gatcgcgccg agcagctcgc ccgtgctcgg gttggccgac
     2821 tgtcccccgt ggaccacgcc ggccacgccg aagtcgcgga agatcgccgc cagcccgtcg
     2881 cccgcggcca ccgccaggac cccgagcgcc gggacctcca cggggcccga cgcgccgttg
     2941 gagccggcca cggattcgct ggggaggccc gtgaactcgg ccgcccgcgt ctcgcgaacg
     3001 tccctcgcct ggtggtcgag gttctcgacg ctgatccggc tcagggcgcc catcgtcagt
     3061 ccgtagccga tgacgagatc agggcgatcg ttgtggacgt ggaccttgag cgcccgcgca
     3121 tccccggcca cgaggaccga atcgccgatc gattcgaggt ggtcacggat ggcgtcgacg
     3181 tcgagggccg cgaggtggct cggctggagc aggaacatcg tctcgtagcc gaagccctcg
     3241 tcggcgtggg cgacgagggt ggagaccctg gacccagccg cgggtctggc gcgttccctg
     3301 gcgccacctg cggagcggtc ggcgacgtac cggtgggctc cctggagcag ccggtacagg
     3361 ccctggccgc ccgaatcgac cacgcccgcc tcgcgcagga tcgccagcag gctgggtgtt
     3421 cgcgccaccg aacgttcggc cgcctcgacc gtggcgccga ggaccgactc gatgtcgggg
     3481 tcgcgctcgg ccgcggtcac cgccgccgtg gccgcctcg
//
LOCUS       DATDDI010000434         1903 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_51131, whole genome shotgun sequence.
ACCESSION   DATDDI010000434 DATDDI010000000
VERSION     DATDDI010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1903)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1903)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1903
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51131"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..985
                     /locus_tag="VIU37_06215"
     CDS             <1..985
                     /locus_tag="VIU37_06215"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY6013578.1"
                     /translation="GARIITMSLGGTLSALGVANVQPAFDAAYAAGAVVVAASGNDGS
                     TVNEYPCNFAHVICVGSTTRDGTGVSTFSTRTAALAIVAPGESIISARPGNGYAYGTG
                     TSMATPHVTGAVALLRSVDPTISVDEVFADLTLTARPLVAGGRNPDSGYGLLQVGPAL
                     DLAAGNLGLPAPTPTPTPTPTPAASPTPTPTPLPGASPTPTPDPSASPTPSPTPVATP
                     TPTPPSVASANPRNGARNVLRSAQPRLTFSVPVTGISTRTITMLDLSRGGRRVVIRVS
                     YSTASRIATIRPAVRLSANHSYRILVGGIASAGEGVPLARTFTVTFRTGYR"
     gene            1122..1535
                     /locus_tag="VIU37_06220"
     CDS             1122..1535
                     /locus_tag="VIU37_06220"
                     /inference="COORDINATES: protein motif:HMM:NF045421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013579.1"
                     /translation="MADHTGSGTKADPWILQTPPGTSSYSMYIDESSDPPSIVCQVGG
                     TQLRYDRRAIDDLHSMLKAHGDWMPLGGADEQKPAPEGSVEAWGRSADNPVGGWYGLK
                     KGLRGRFGVYMPPLLEALGLAELTHDPKNNRMRAR"
     gene            complement(1565..>1903)
                     /locus_tag="VIU37_06225"
     CDS             complement(1565..>1903)
                     /locus_tag="VIU37_06225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013580.1"
                     /translation="TNCDDDLFAASNRRLGVAFDWIVTAQSLRSYKPDPRNFTIAFER
                     LGLPPERILHVAQSLFHDHVPAKKLGLSSVWIDRRQGRGGPGATPPAAAHPDVTFPDL
                     ASFAEAATRP"
BASE COUNT          275 a          711 c          670 g          247 t
ORIGIN      
        1 cggcgcccgc atcatcacga tgagcctggg tgggaccctg agcgcgctcg gcgtggcgaa
       61 cgtccaaccg gccttcgacg ccgcctacgc ggcgggagcc gtggtcgtgg cggcatcggg
      121 caacgacggt tccaccgtca acgagtaccc ctgcaacttc gcccacgtca tctgcgtggg
      181 ctcgacgacg cgggacggga ccggggtcag caccttctcg acccggacgg ccgcgctggc
      241 gatcgtggcg cccggcgaga gcatcatctc ggcccggccg gggaacggct acgcgtatgg
      301 gacggggacg tcgatggcga cgccgcacgt gactggcgcg gtcgcattgc tgcgctcggt
      361 cgaccccacg atcagcgtgg acgaggtgtt cgccgacctg accctgaccg cccggccgct
      421 cgtggcgggt gggcgcaacc cggattcggg ctacggcctg ctccaggtcg gaccggcgct
      481 cgatctcgcc gccggcaacc tcggcctgcc ggccccgacc cccacgccga ccccgacgcc
      541 cacgccggcc gccagcccga ccccgacccc gactccactg ccgggcgcca gcccgacgcc
      601 gacgccggac ccatcggcca gcccgacgcc ctcgccgaca ccggtcgcca cgccaacgcc
      661 gaccccgccg tcggtcgcgt cggcgaaccc ccgcaacggg gcgcggaacg tgctccggtc
      721 ggcgcaacct cgactcacgt tctcggtccc ggtgaccggc atctcgacac ggacgatcac
      781 catgctcgac ctgtcccgcg gcggccgccg cgtcgtcatc cgggtcagct acagcacggc
      841 gagccgaatc gccacgatca ggcccgccgt gcggctgagc gcgaaccact cgtatcgcat
      901 cctggtcggc ggcatcgcct cggccggcga gggtgtcccg ctggcccgga ccttcaccgt
      961 gaccttccgt accggctacc gctgagatcc ggcgggcggg tggcgcccgg agggcgaccc
     1021 cgcctggcgc gccgccaagc ttgtccggac ccggttcgct gggtaccgta ggcggtctcc
     1081 gaaggccgcc ggccttcgcg actcgccaag gggaggccga cgtggcggat cacaccggct
     1141 cggggaccaa ggcggatcca tggatcctgc agacaccgcc gggcacctcc agctactcga
     1201 tgtacatcga cgagtcctcc gacccgccgt cgatcgtctg ccaggtcggc gggacgcagc
     1261 tccgctacga ccggcgggcg atcgacgacc tccattcgat gctcaaggcc cacggcgact
     1321 ggatgcccct cggtggagct gacgagcaga agccggcacc ggagggcagc gtggaggcct
     1381 ggggtcgatc ggcagacaac ccggtcggcg gctggtacgg gctcaagaag ggcctgcgcg
     1441 gccggttcgg cgtctacatg ccgccgttgc tcgaggcgct cggcctggcc gagctgaccc
     1501 acgacccgaa gaacaaccgg atgcgggccc gctgaccgaa cccgcgggcg atcggccgcc
     1561 gtccctacgg ccgagtggcg gcctccgcga acgacgccag atccgggaag gtgacgtccg
     1621 ggtgcgcggc cgcgggcggt gtcgcgcccg ggccgccacg gccctggcgc cggtcgatcc
     1681 agaccgacga cagcccgagc ttcttcgccg gaacgtgatc gtggaacagg ctttgggcga
     1741 cgtggaggat ccgctcgggc ggcagcccga ggcgctcgaa ggcgatcgtg aagttgcgcg
     1801 ggtcgggttt gtagcttcgg agcgactggg ccgtgacgat ccagtcgaac gcgaccccga
     1861 gccggcggtt ggacgcggcg aacaggtcgt cgtcgcagtt cgt
//
LOCUS       DATDDI010000435         1758 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_217520, whole genome shotgun sequence.
ACCESSION   DATDDI010000435 DATDDI010000000
VERSION     DATDDI010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217520"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VIU37_06230"
     CDS             complement(<1..235)
                     /locus_tag="VIU37_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013581.1"
                     /translation="MLGLVGVAIAQTAEVGSLWWLGLAFALGAGTTYALANAFSRTVQ
                     RERPLLFVTQAVSSLGGGLPLALIVAGRVAVGQT"
     gene            complement(788..>1758)
                     /locus_tag="VIU37_06235"
     CDS             complement(788..>1758)
                     /locus_tag="VIU37_06235"
                     /inference="COORDINATES: protein motif:HMM:NF015570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEY6013582.1"
                     /translation="GGRDVGTDMGMNQAGGTPERTPVRLERSDVRRSFWLWTFFSHAN
                     YNYERLQGTAFAQAMVPIIKKLYKDPDEIKAALKRHLVFFNTEPNVGGVIHGAVIAME
                     EERANGAPIDDDAINSVKTGLMGPLAGIGDSISQGTITPILLSIGIGLAAAGNPLGSV
                     LYFVLEVGIMLALAYFMWMQGYDRGRTGVADLLRSGTLNRYLTGAGVLGNLVMGALAY
                     QFVHFYLTWTIGIDAGNGNVTPFDFNKNLFGAIMPGLLPLAWVLLTWYLIARRRISPL
                     WVLVAYVIFAMVAAYPFFNADANNQCASLLNPFFQPAAGCPPPAPQ"
BASE COUNT          287 a          580 c          659 g          232 t
ORIGIN      
        1 ccgtctgacc gaccgccacc cgcccggcga cgatcagcgc caggggcaat ccgccgccga
       61 ggctggagac ggcctgggtc acgaacagca gcggtcgctc gcgctggacc gtgcgactga
      121 aggcattggc cagggcgtag gtcgtgccgg ctccgagggc gaacgcgagg ccgagccacc
      181 acaggctgcc gacctcggcg gtctgggcga tcgccacgcc gaccaggccg agcacgatga
      241 gccccgcccc ggcgagctgg cccggcgtcg ggcggtcgcg gttgacgagg aggcccagcc
      301 acaggccgcc caggaccgag ccggcctgga cgccggcgat cgtgatcccc aggccgccat
      361 tggtgaggcc ctggaagtac aggacgttgc cgacgacgag gctgacgctg ccgccgacga
      421 cgagatagcc gatgagccgc caggtgagga acgccgggtg gcgcggccgg agctcgcggc
      481 cgcccgaccg ggcgacgagc agccatgcca ggacgccgag cggcagcagc cggaccagcg
      541 acccgaggaa cgggtcgatg tgcggcgcgg cgacgcgcag cgtgacgttg acgacggtgt
      601 aggcgagggc gctgacgatc gcccatcgct cgccgatccc gatcgtggcc tatctccagc
      661 tggtcttcgg gacgcccgac ccggccggcg agacggcggt caccgccgcg ggcatgaatc
      721 cggcggcccg ggccggagac ccgggccgcc gtgggtgagc ggggttgtcg cggtcagctg
      781 gccgcgatca ctggggcgcc ggtggcgggc agcccgcggc cggctggaag aacgggttga
      841 ggagcgacgc gcactggttg ttcgcatccg cgttgaagaa cggatacgcc gcgaccatcg
      901 cgaagatgac gtaggccacg agcacccaca gcggcgagat ccgccggcgg gcgatcaggt
      961 accacgtcag caggacccat gccagcggca ggaggccggg catgatcgcg ccgaacaggt
     1021 tcttgttgaa gtcgaacggc gtgacgttgc cgttgccggc atcgatcccg atcgtccagg
     1081 tcaggtagaa gtggacgaac tggtacgcca gggcgcccat gacgaggttg cccaggacgc
     1141 cggcaccggt caggtagcgg ttgagggtgc cggaacgcag cagatcggcg acgccggtcc
     1201 ggccacggtc gtagccctgc atccacatga agtaggccag ggccagcatg atcccgacct
     1261 cgaggacgaa gtacaggacc gagccgaggg gattgcccgc ggcggccagc ccgatgccga
     1321 tcgagagcag gatcggggtg atcgtgccct ggctgatcga gtcgccgatg ccggccagcg
     1381 ggcccatgag gcccgtcttc accgagttga tggcgtcgtc gtcgatcggc gcgccgttgg
     1441 cacgctcctc ctccatggcg atgaccgcgc cgtggatgac gccgccgacg ttcggctcgg
     1501 tgttgaagaa gacgaggtgc cgcttgaggg cggccttgat ctcgtcgggg tccttgtaga
     1561 gcttcttgat gatcgggacc atggcctgcg cgaaggcggt gccctgcagg cgctcgtagt
     1621 tgtagttggc gtggctgaag aaggtccaca gccagaacga gcgacggacg tcgctgcgct
     1681 cgagccggac cggggtccgc tcgggcgtgc ccccggcctg gttcatgccc atgtcggtgc
     1741 ccacgtcacg cccccctc
//
LOCUS       DATDDI010000436         2007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_175944, whole genome shotgun sequence.
ACCESSION   DATDDI010000436 DATDDI010000000
VERSION     DATDDI010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175944"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VIU37_06240"
     CDS             complement(<1..644)
                     /locus_tag="VIU37_06240"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6013583.1"
                     /translation="MVLLAERACGELAGSAGPTLACRVPAGYRAIATSLLSGLRELPC
                     DVYISTGGHALLYTTVGSDAIDVIRRVDGECHLLIRAEDHDLFRRFLAAGLRGVLADD
                     SLDPTERSRRAYAISTEVVSPLFTSPGGVNREGLAVSQDVIDSVSEALLEGNDLVWAI
                     VARMQKHLTTHTHAINTAIYAVVLAQYLRLGEREDVLDTGRGALLHDIGKTRISA"
     gene            739..1584
                     /locus_tag="VIU37_06245"
     CDS             739..1584
                     /locus_tag="VIU37_06245"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HEY6013584.1"
                     /translation="MQSPPDRSAVTRAAPSPAVALTVDQDGYERLTREVRALLGFDLA
                     QYKAPQVWRRVNGFATAHGLPDVPALIARCRLDPELRTAFRDMITINVSEFLRNPEAF
                     QTLRARYLPGLLEGRPLVRVWSAGCSLGYEPYSIAMLVRELSPTGNVRILATDLDERI
                     LAQARASRYTEVQMLGVSPARRTRFFVHDQDGWVVRPELRALVTFTRHDLLRDAFGTA
                     FDLIACRNVAIYFTEEAKAELYRRFARALRPGGLLFVGATEAISGARELGLRPDQPGF
                     YVRGE"
     gene            complement(1687..1815)
                     /locus_tag="VIU37_06250"
     CDS             complement(1687..1815)
                     /locus_tag="VIU37_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013585.1"
                     /translation="MTRIRQCAAGAADDRDTLSRDEGMIMKPVLLGAGNAGMGMVG"
BASE COUNT          286 a          733 c          689 g          299 t
ORIGIN      
        1 gccgagatcc gggtcttccc gatgtcgtgg aggagggcgc cccgaccggt gtcgagcacg
       61 tcctcgcgct ccccgagacg gagatactgg gccaggacga ccgcatagat ggcggtgttg
      121 atcgcatggg tgtgcgtggt caggtgcttc tgcatccggg ccacgatcgc ccagacgagg
      181 tcgttcccct cgagcagcgc ctcgctgacc gagtcgatca cgtcctggct gaccgcgagg
      241 ccctcgcggt tgacgccgcc gggcgacgtg aacagcgggc tcacgacctc ggtcgagatc
      301 gcgtaggccc gccggctccg ttcggtggga tccaggctgt cgtcggccag gacgccgcgc
      361 agcccggccg ccaggaaccg ccggaacagg tcgtggtcct cggcccggat gagcaggtgg
      421 cactccccgt cgacccgccg gatgacgtcg atcgcgtccg acccgacggt ggtgtacagg
      481 agcgcgtggc caccggtcga gatgtacacg tcgcagggga gctcgcgcag gccgctcagg
      541 agcgacgtgg cgatcgcccg ataccccgcc ggcacgcggc acgcgagggt cggcccggcg
      601 ctgcccgcca gctcgccaca tgctcgttct gccaggagga ccatggtcga gatatcggct
      661 cgggaagcgc gattcttgag caccgtctca gggtgatccc cgatgggcac gcgggccgcg
      721 agacggtaca aggaggaggt gcaatcgcct cccgaccggt ccgccgtcac ccgggccgca
      781 ccgtcgccgg ccgtcgccct gaccgtcgac caggacggct atgagcggct gacccgcgag
      841 gtgcgcgcgc tcctgggctt cgatctcgcc cagtacaagg cgccccaggt ctggcgacgc
      901 gtcaacggct tcgcgacggc tcacgggctg cccgacgtcc cggccctcat cgcccgctgc
      961 cggctcgacc ctgagctgcg gacggccttc cgcgacatga tcacgatcaa cgtcagcgag
     1021 ttcctccgga atccggaggc attccagacg cttcgggccc ggtaccttcc cgggctcctc
     1081 gaagggcggc cgctggtgcg ggtctggagc gcgggctgct cgctcgggta cgagccgtat
     1141 tcgatcgcga tgctcgtgcg cgagctgtcc ccgaccggca acgtccggat cctggccacc
     1201 gacctcgacg agcggatcct ggctcaggca cgagcgagcc ggtacaccga ggtgcagatg
     1261 ctcggcgtgt cgccggcacg gcggacccgc ttcttcgtgc acgaccaaga cggctgggtg
     1321 gtgcgaccgg agctccgtgc cctggtgacg ttcacccggc acgatctcct gcgcgacgcg
     1381 ttcgggacgg cgttcgacct gatcgcctgc cggaacgtcg cgatctactt caccgaagaa
     1441 gccaaggccg agctctaccg gcggttcgcc cgcgcccttc ggcccggcgg actgctgttc
     1501 gtcggcgcca cggaggcgat ctcgggcgcc cgcgagctcg ggctccgccc ggaccagccc
     1561 ggcttctacg tgcgagggga gtaggaatgg cccctcagat cgggacgcac ggcccgggtg
     1621 ccgggggccg cgaggccata cagttcgccc agttcgaaga ggaacgatcg gccgcttggg
     1681 gagcggtcag cccaccatcc ccatgccggc attgccggcc ccaagcagga ccggcttcat
     1741 gatcatgccc tcgtcccgcg acagcgtgtc ccgatcgtcc gcggcgcccg ccgcacactg
     1801 gcgaatcctg gtcatcgacg atgacgacta cgtgcacgtc tcgatctgtg ccgcgctccg
     1861 atccctccac ccggagctgt cccgtgccgc gacggcggcc gaggggctcg agctcgcccg
     1921 tcgcgtccgg cccgacctgg ccatcgtcga cctcgggctg cccgacgccg acggctacca
     1981 gctcacgcgc tggctccgcg ccgaccc
//
LOCUS       DATDDI010000437         2219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_175952, whole genome shotgun sequence.
ACCESSION   DATDDI010000437 DATDDI010000000
VERSION     DATDDI010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175952"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VIU37_06255"
     CDS             complement(<1..252)
                     /locus_tag="VIU37_06255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013586.1"
                     /translation="MIGGRRSLQGRKPGDRRVRVERPHAPYFRYTGRGQLTAREAASA
                     PTTPAGKAWATIRGFFVGRPLMTEDELGERLSKKKALAIF"
     gene            complement(262..993)
                     /locus_tag="VIU37_06260"
     CDS             complement(262..993)
                     /locus_tag="VIU37_06260"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEY6013587.1"
                     /translation="MRIAVISDIHGNLVALDAVLASAGEIDAVWHLGDVVGYGPEPDA
                     VVERLVSVGAIGVRGNHDAAACGGTEIEWFNPDARSAMEWTRQVISEATRAWLSALPE
                     RRETGGFTLVHGSGRDPIWEYVTTPVAAAASLVAMDTQHGLNGHTHVPAAYRVVDDRV
                     GRLGPDRGAVEAAVTLGDGRLLLNPGSVGQPRDGDPRASYLVLDTDAGTASWTRVAYD
                     IAAVDSAMRAAGLPRRLAERLHHGF"
     gene            complement(1019..1792)
                     /locus_tag="VIU37_06265"
     CDS             complement(1019..1792)
                     /locus_tag="VIU37_06265"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF014575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070043 - rRNA
                     (guanine-N7-)-methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEY6013588.1"
                     /translation="METPRKPLPTRVDETPDLAPAYGAALRAGLAALGLDLSAGARAA
                     IDGHVRLLLAWTEAINLTAIREPGAVALGHVVDSLTAVPLLRGLGIDRFLDLGSGGGY
                     PGIPLAAALPAARAVLAEPIGKKAGFLRTAITATGLDGVAEAAAVRSETLAADARHRG
                     RWPAVTARAVATLADLVELSFPLLAPGGVLVAWKRGDLAADLAAAERAMLAMGGGRLD
                     VQPVVVPGLDGHRLVVAQARGRVPATFPRDPAARKRRPW"
BASE COUNT          280 a          831 c          826 g          282 t
ORIGIN      
        1 gaagatggcc agcgccttct tcttggacag gcgctcgccg agctcgtcct cggtcatcag
       61 cgggcggccg acgaagaacc cgcggatcgt cgcccacgcc tttccggcag gggtcgtcgg
      121 tgcgctcgcc gcctcgcgtg cggtcagctg tccacgaccc gtgtagcgga agtagggtgc
      181 gtggggccgc tccacgcgca cgcgccgatc gcccggcttg cggccctgca gcgaccgccg
      241 tccgccgatc accccgcggc ctcagaaccc atggtgcagg cgctccgcca gccggcgcgg
      301 caggcccgcc gcccgcatgg ccgagtcgac cgccgcgatg tcgtacgcga cgcgagtcca
      361 gctggcggtg ccggcgtcgg tgtccaggac caggtagctc gcccgtggat cgccgtcgcg
      421 aggctgtccg acgctgccgg ggttgagcag caggcgacca tcgccgagcg tcaccgcggc
      481 ctcgaccgcg ccgcgatccg ggccgaggcg gccgacccgg tcgtcgacga cgcggtacgc
      541 cgccgggacg tgggtgtggc cgttcagccc gtgctgcgtg tccatcgcga cgaggctggc
      601 cgcggccgcg accggcgtcg tgacgtactc ccagatcgga tcgcgaccgc tgccgtggac
      661 cagcgtgaac cccccggtct cgcggcgctc gggcagcgcg gacagccacg cgcgcgtcgc
      721 ctcgctgatc acctgccgcg tccattccat ggccgaccgg gcgtccggat tgaaccactc
      781 gatctcggtc ccgccgcagg cggccgcatc gtgattgccg cggacgccga tggcaccgac
      841 cgagaccagg cgctcgacga ccgcgtccgg ctccgggcca tagccgacga cgtcgccgag
      901 atgccagacc gcgtcgatct cgccggcgct ggcgaggacc gcgtcgaggg ccaccaggtt
      961 gccgtggatg tccgagatca ccgcgatccg cattccggcc aatctagcag ccgggcgttc
     1021 accacggccg acgcttccgc gccgccgggt cgcgcgggaa ggtcgccggg acgcgaccgc
     1081 gggcctgcgc gacgaccagc cggtggccat caaggccggg cacgaccacg ggctggacgt
     1141 cgaggcgccc gccacccatg gcgagcatcg cgcgctcggc ggcggcgaga tcggcggcga
     1201 ggtcgccgcg cttccaggcg acgaggacgc cacccggcgc gaggagcggg aacgacagct
     1261 cgacgaggtc cgccagggtc gccacggcgc gcgcggtgac ggcgggccat cggccgcggt
     1321 gccgcgcgtc ggcggccagc gtctcggatc gcacggccgc cgcctcggcg acgccgtcga
     1381 gaccggtcgc cgtgatcgcc gtgcgcagga agcccgcctt cttgccgatc ggctcggcca
     1441 gcacggcccg ggccgcaggc agcgccgcgg ccagcgggat gcccgggtac ccgccgccgg
     1501 atccgaggtc caggaagcga tcgatcccga gcccgcggag gaggggcacg gccgtcaggc
     1561 tgtcgacgac gtggccgagg gcgaccgcgc cgggctcgcg gatcgcggtg aggttgatcg
     1621 cctccgtcca ggcgagcagg aggcgcacgt ggccgtcgat cgcggcgcgc gcgcccgcgg
     1681 agaggtcgag cccgagggcc gcgagtcccg ctcggagcgc agcgccgtag gccggcgcca
     1741 ggtcgggggt ctcgtcgacg cgcgtcggga gcggcttacg cggtgtctcc acggcacgcc
     1801 tccagtggct cgcgtgccgt ccaaccgcgc ggcgccgctc ccggcgtcgg catcgtttcg
     1861 caccgcgggg gcctggtctt ccccggtccg ttcggttcat ggtcgggttt ccccggaccc
     1921 ctggcggacc gcgttacccg ggcgtcgatc ccggtgcgga tgccggacgg tagccgtccg
     1981 gcaggcccct cgtcaacggg gttttccacc aacggacggc gggctgcgga attggtggat
     2041 aaccggccgc cgtcagctgg ttcgtccacc gccacggact ggccggccga gcgtccgccg
     2101 gacgacgtcg atcacctcgt cgacatactg gtcggcattg ccgtgctcgg cggcggtccg
     2161 gacgcagccg ccgacgtggt cctcgagcac gatgatcgac agggcgtcga cggccgccc
//
LOCUS       DATDDI010000438         2736 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_113429, whole genome shotgun sequence.
ACCESSION   DATDDI010000438 DATDDI010000000
VERSION     DATDDI010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113429"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..528
                     /locus_tag="VIU37_06270"
     CDS             100..528
                     /locus_tag="VIU37_06270"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY6013589.1"
                     /translation="MTRTIQDAAAETGVSRDTLRYYEKIGILPGIARSRSGHRRFSDD
                     DMGWIKLVQCLRATGMPIEDLQAYAELMQQGDSTAGERLRLLQDHKRRIEADMAELSI
                     ALELVERKITGYDEVLRRGLNVEPPDHRPAPRKVRVRAGH"
     gene            complement(578..1291)
                     /locus_tag="VIU37_06275"
     CDS             complement(578..1291)
                     /locus_tag="VIU37_06275"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6013590.1"
                     /translation="MQLSSSLHRLGSSLVNSYLVEEGGLVTIVDTGLPGFWRDLPAEL
                     AAMGRSLDDVRGVVLTHGDTDHIGFAERIRRERGVPVFVHELDAARARGAVKKPMSGW
                     GPVKLGPLAGFLVYGARHGALRITYLADVATFADGDTLDLPGSPRIIHLPGHTPGSVA
                     VHVPAVDAVFMGDAFTTRSVLTGEVGPRPAPFTLDPAQARASLAKLDAIDATWVLPGH
                     GEPWSGGLAEALRLIRAAG"
     gene            complement(1307..1678)
                     /locus_tag="VIU37_06280"
     CDS             complement(1307..1678)
                     /locus_tag="VIU37_06280"
                     /inference="COORDINATES: protein motif:HMM:NF022279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YrdB family protein"
                     /protein_id="HEY6013591.1"
                     /translation="MLLANLALRFIVELVGVGALAYAAYQAPLDGFARVAVTVVAPLA
                     FIVFWAVVVAPKATNGFSQRQRDAIGTGLLVLVAVALGLAGQPAAAAVFGAVVIVNWA
                     LGVVLGQDASSAIGSVGDRSR"
     gene            1737..2312
                     /locus_tag="VIU37_06285"
     CDS             1737..2312
                     /locus_tag="VIU37_06285"
                     /inference="COORDINATES: protein motif:HMM:NF024701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR-like C-terminal domain-containing protein"
                     /protein_id="HEY6013592.1"
                     /translation="MPTPARTSIDASVAAGRAILESDGLEALTMSRVAAAVGVRAPSL
                     YKRVSGRSELIRLIANDVAIDLTHRLDVAGTPSDPAAGLRAIAVAFRAWALAHPEAYH
                     LLFDRLPEDARVDPQVNARSAEALLRTAAELAGERHALDAARTVVAWANGFLNMELAG
                     AFRLGGDVDEAFDFGVERLTRAIREEPPFGP"
     gene            2364..2576
                     /locus_tag="VIU37_06290"
     CDS             2364..2576
                     /locus_tag="VIU37_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013593.1"
                     /translation="MSRSQHRRPEQSAGAFLGPDLLVPVPLKTLSDDYRDEPAEPEDS
                     EREPEPERPGAVRRVLDRLTGQPDRR"
BASE COUNT          420 a          991 c          973 g          352 t
ORIGIN      
        1 caagccccgg tttttcgatg ccggaatggg cgtgacagac atgccgggcc tggctcttga
       61 cttggagtgg actccaagtt gtagggtctt gccatgacca tgacgcgaac tatccaggac
      121 gccgccgcgg agaccggcgt aagccgcgac acgctgcgct actacgagaa gatcggcatc
      181 ctgcccggca tcgcccggtc gcggagcggc catcgccgct tcagcgacga cgacatgggc
      241 tggatcaagc tcgtccagtg cctgcgcgcg acgggcatgc cgatcgagga cctccaggcc
      301 tacgccgagc tcatgcagca gggcgattcg accgccggcg agcgcctgcg gctcctccag
      361 gaccacaagc gccgcatcga ggccgacatg gccgagctct cgatcgccct cgagctggtc
      421 gagcgcaaga tcaccggcta cgacgaggtg ctccgccgcg gcctcaacgt cgagccgccc
      481 gaccatcggc cggcgccgcg caaggtccgg gtgcgcgccg gccactgagt ccgaacccgc
      541 ggtcccggac cggtccgggt gccacccggc cgagccgcta ccccgccgcg cggatcagcc
      601 gaagcgcctc cgccagtccc ccactccacg gctcgccatg ccccggcagc acccaggtgg
      661 cgtcgatggc atcgagcttc gcgagcgacg ccctggcctg cgccggatcg agggtgaacg
      721 gcgccggccg tggaccgacc tccccggtca gcacgctccg ggtcgtgaac gcgtcgccca
      781 tgaacacggc gtcgaccgcc ggcacgtgca ccgcgacgct cccgggcgtg tgcccgggca
      841 ggtggatgat cctgggcgag ccgggcaggt cgagcgtgtc gccgtcggcg aacgtcgcaa
      901 cgtcggccag gtaggtgatc cgcagcgcgc cgtgccgagc gccgtagacg aggaacccgg
      961 cgagcggccc gagcttcacc ggcccccagc cggacatcgg cttcttgacc gcgccacggg
     1021 cgcgcgcggc gtcgagctcg tggacgaaga cggggacacc acgctcgcgg cggatccgtt
     1081 cggcaaagcc gatgtggtcg gtgtcgccgt gggtcagcac gacgccccgg acgtcgtcga
     1141 gcgagcggcc catcgcggcc agctcggccg gcaggtcgcg ccagaagccg ggcagcccgg
     1201 tatcgacgat cgtgaccagc ccgccttctt cgacgaggta gctgttgacg aggctcgatc
     1261 cgagccgatg gagggacgac gagagctgca tggggacctt ccgttcctac cgggaccggt
     1321 cgccgaccga tccgatcgcg cttgacgcgt cctgcccgag gacgacaccg agcgcccagt
     1381 tgacgatcac gaccgcaccg aagacggcgg ccgcggccgg ctgccccgcc aggccgagcg
     1441 ccacggcgac aagcaccagc aacccggtgc cgatcgcgtc gcgctgccgc tggctgaacc
     1501 cgttggtcgc cttgggggca accacgacgg cccagaagac gatgaacgcg agcggggcca
     1561 ccacggtgac cgcgacccgg gcgaaaccgt cgagcggtgc ctggtacgcc gcataggcga
     1621 gcgccccgac gccgacgagc tcgacgatga accggagggc gaggtttgcg agtagcatgg
     1681 ggctatacta cgtagccatc atagctactg tcaatagcca tggagacggt tgcagtatgc
     1741 cgacgccggc tcgtacctcg atcgacgcga gcgtcgccgc ggggcgcgcc atcctggagt
     1801 cggacgggct cgaggccctg acgatgtcgc gggtggccgc tgcggtcggc gtccgcgccc
     1861 cgtcgctcta caagcgggtc agtggccgga gcgagctgat ccggctgatc gcgaacgacg
     1921 tcgcgatcga tctcacccac cggctcgacg ttgccgggac gccgagcgac ccggcggctg
     1981 ggttgcgggc gatcgcggtc gcgtttcgtg cctgggcgct cgcgcatccc gaggcctatc
     2041 acctcctgtt cgatcgcctg cccgaagacg cgcgcgtcga cccgcaggtc aacgccaggt
     2101 cggccgaggc cctgctccgg accgccgccg agctggccgg cgagcggcac gccctcgacg
     2161 cggcccgcac cgtggtcgcc tgggcgaacg gcttcctgaa catggagctg gccggggcgt
     2221 tccggctcgg cggcgacgtg gacgaggcct tcgacttcgg cgtcgagcgg ctgacgcgcg
     2281 ccatccgcga ggagccgccc ttcggccctt gaccggcatg caggccgggc gcagcgttgg
     2341 gccacgcagc agcgaggcac gccgtgagtc gatcgcagca ccgtcgtccg gagcagagcg
     2401 ccggggcatt tctcggcccg gacctgctcg tgccggtccc actgaagacg ctcagcgacg
     2461 actaccggga cgagcccgcc gagcccgagg attccgagcg ggagccggag cccgagcggc
     2521 ccggtgccgt ccgccgggtg ctcgaccggc tgacgggtca gcccgaccga cgctgagtcc
     2581 cagccgagag gaccgccgca ccaccgagat cgagggtcgc ctgcggccgg accgcggcca
     2641 tcagttcggc gcggtgcgtg atgaagatcg ccgtccgtcc gcgggcggcc gccaggagat
     2701 cggcggtcag cgccgccgcg gtcgcctcgt cgagat
//
LOCUS       DATDDI010000439         1611 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_633923, whole genome shotgun sequence.
ACCESSION   DATDDI010000439 DATDDI010000000
VERSION     DATDDI010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633923"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(356..994)
                     /locus_tag="VIU37_06295"
     CDS             complement(356..994)
                     /locus_tag="VIU37_06295"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013594.1"
                     /translation="MGPRSRLTDDALGRAVDELAARDSDLAAIVARHGPPPMWERAPG
                     FATLLHIVLEQQVSLASAQAAYDRLRAAADPLTPARFLELTDAELLAIGFSRQKARYG
                     RALADAIDSGTLDLESLESLDDDAVHAALQAVPGIGPWTSSVYLLMVLLRPDLWPVGD
                     IALAESVGQVKGLGRRPDPAEMTDLGEAWRPWRSVAARLFWHDYLARRGRSG"
     gene            complement(1011..>1611)
                     /locus_tag="VIU37_06300"
     CDS             complement(1011..>1611)
                     /locus_tag="VIU37_06300"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013595.1"
                     /translation="RSMYGGYCFFNNAAIAAEAIVRATGERVAILDVDYHHGNGSQQI
                     FWRRGDVRYVSIHADPDRAYPYFLGRADETGEAEGAGENLNIPLRAGATNEEYLVAVD
                     RALEAIVAVPGSVIVVSLGFDSYGLDPIGDFALTTDVYHEIGRRVAATGRRLVILQEG
                     GYHRPSLGENARAWLRGAEGRPFEPLPSGGFGASGAVAG"
BASE COUNT          240 a          595 c          566 g          210 t
ORIGIN      
        1 tcgacggtgc ccttcagcct cgttcgatcg gggtcggcac ccacgccctg acactacctg
       61 tcaggccgtg ctgcgacaag cggacgagca gctgctgcga atgcccacca cacgggcggt
      121 cgacgacgtc tcgccgtccg accgatccct acctgcatga tcagccggca catgcatcgg
      181 gccatgcggg gacgacccag ccaacgcgca tcaccatgca gagagccgtc cgcggtgttg
      241 ctcccggccc cgaatccccg cctgatgcgc atttggcaga gacggcgcgg actccgcctc
      301 gcgggccagg ctgccgcgct ggtcgacggg gcggtagccg ccaaccgggc caccactacc
      361 ccgagcgtcc ccggcgagcc aggtagtcgt gccagaagag ccgcgcggcg accgagcgcc
      421 acggtcgcca ggcctcgccg agatccgtca tctcggccgg atcggggcgt cggccgagcc
      481 ctttcacctg gccgacggat tcggccagcg cgatgtcgcc gacgggccac agatcgggtc
      541 gcagcaggac catcaacagg tagaccgacg aggtccacgg cccgatcccg ggcacggcct
      601 ggagcgccgc gtggacggcg tcgtcgtcga gcgactcgag cgactcgagg tcgagcgtgc
      661 ccgaatcgat cgcgtcggcc agcgcccggc cgtatcgcgc cttctgccgg ctgaacccga
      721 tcgcgagcag ctcggcgtcg gtgagctcga ggaaccgcgc cggggtcagc gggtccgccg
      781 cggcccggag ccgatcgtag gcggcctgcg ccgacgcgag cgacacctgc tgttccagca
      841 cgatgtggag gagcgtcgcg aacccggggg cccgctccca catcggcggc gggccgtggc
      901 gggccacgat cgccgcgagg tcgctgtccc gggcggcgag ctcgtcgacg gcacgtccga
      961 gagcatcgtc ggtcaggcgc gagcgcgggc ccacgaccgg ttggcctccg tcagccggca
     1021 acggcgccgg acgccccgaa cccgcccgac ggcagcggtt cgaagggccg cccctccgcg
     1081 ccgcgaagcc acgccctcgc gttctcaccg agcgacggcc ggtggtagcc gccctcctgg
     1141 aggatgacca ggcgacgccc ggtcgccgcg acccgccggc cgatctcgtg atacacgtcc
     1201 gtggtcaggg cgaagtcgcc gatcgggtcg agcccgtagc tgtcgaagcc gagcgacacg
     1261 acgatcacgg agccgggcac cgcgacgatc gcctcgagcg cccgatcgac cgcgaccagg
     1321 tactcctcgt tggtcgcgcc ggcacggagc gggatgttga ggttctcccc cgcgccttcg
     1381 gcctcgccgg tttcgtcggc ccggcccagg aagtacgggt atgcccggtc cgggtcggca
     1441 tggatggaca cgtagcggac gtcgccgcgg cgccagaaga tctgctggct gccgttgccg
     1501 tggtgatagt ccacgtccag gatcgcgacc cgctcgccgg tcgcccggac gatcgcctcg
     1561 gcggcgatcg ccgcgttgtt gaagaagcag tagccgccgt acatcgaacg g
//
LOCUS       DATDDI010000440         1620 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_280096, whole genome shotgun sequence.
ACCESSION   DATDDI010000440 DATDDI010000000
VERSION     DATDDI010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280096"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..472)
                     /locus_tag="VIU37_06305"
     CDS             complement(<1..472)
                     /locus_tag="VIU37_06305"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY6013596.1"
                     /translation="MTAILAGLGAAALWATATLCSSRSSRMLGSRVVLAWIMIVGVAV
                     GLPIAIASPPPTTVAPSTFALLLLAGSCYVVGLQLTYAALRVGKVSIVAPIVSTEGAV
                     AAVVSVVLGDPIGVIAGITLVAIAAGIVLSSVERARPDVPAGDFDVLADAIDEPV"
     gene            613..1287
                     /gene="rpsT"
                     /locus_tag="VIU37_06310"
     CDS             613..1287
                     /gene="rpsT"
                     /locus_tag="VIU37_06310"
                     /inference="COORDINATES: protein motif:HMM:TIGR00029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEY6013597.1"
                     /translation="MAKTPRTWTGARTPSGLKRVRQAQSRHEVLQPRRSAAKTHVAKA
                     LAAVAQPAGSTIDPVAALAEALSALDRAAKVGAIHPNAAARRKSRLTLKVNAALGGTA
                     VQSGARVVKTTGKAAAAKAAKVRIAAGKAGKAKGAQTAAGKARAALSKTARAEAAAAK
                     AAAESSTSSSTAVKAAPARATKAAATKPAATRKPAATKKPAATKKPAAKATAPKAPAR
                     KAAPKA"
BASE COUNT          283 a          595 c          585 g          157 t
ORIGIN      
        1 gcaccggctc gtcgatggcg tcggcgagga cgtcgaaatc acccgcgggc acatccgggc
       61 gggcacgctc gaccgaggac aggacgatgc cggcggcgat ggccacgagc gtgatgccgg
      121 cgatgacgcc gatgggatcg cccagcacga ccgatacgac ggcggccacg gcgccctcgg
      181 tcgacacgat cggcgcgacg atcgagacct tgccgacgcg gagggccgca taggtgagct
      241 gcagcccgac gacgtagcag ctcccggcga ggagcaggag ggcgaacgtc gagggggcaa
      301 ccgtcgtcgg cggcgggctc gcgatcgcga tcggcagccc gacggcgacg ccgacgatca
      361 tgatccaggc cagtaccacg cgagagccca gcatccggct gctgcgcgac gagcagagcg
      421 tggcggtggc ccacagcgcc gcggcgccga ggcccgcgag gatcgcggtc atgcgccaag
      481 tgtggaacgt ccgcgacggt ctcgtggcgt ggggtcacgc gggggacctg tgctaccatc
      541 cgtctccgcg cccggcgccg tctcgtgtcg cgcgcacact caccgccccc aatcaagccg
      601 aggtttgccc acgtggccaa gacgccccgc acctggactg gggctcgcac gccgtccgga
      661 ctcaagcgag tccgccaggc gcagagccgc cacgaggtgc tccagccccg ccgcagcgcc
      721 gccaagacgc acgtcgccaa ggcgctcgcc gccgtggccc agccggccgg ctccacgatc
      781 gatccggtgg cggccctcgc cgaggccctc agcgcgctcg atcgcgcggc caaggtcggc
      841 gcgatccatc cgaacgccgc cgcccgccgc aagtcgcgcc tgaccctcaa ggtcaatgcc
      901 gccctcggtg gcacggccgt gcagtccggt gcccgcgtcg tcaagaccac cggcaaggcc
      961 gccgccgcca aggccgccaa ggtccggatc gcggccggca aggccggcaa ggccaagggg
     1021 gcccagaccg cggccggcaa ggcacgcgcc gcgctgagca agaccgcacg ggccgaggcc
     1081 gccgccgcga aggcggcagc cgagtcctcg acgagcagct ccaccgcagt caaggcggct
     1141 ccggcgcgcg cgaccaaggc cgccgcgacg aagcccgccg cgaccaggaa gccggcagcg
     1201 accaagaaac cggcagcgac caagaagccg gcagcgaagg cgacggcccc caaggctccg
     1261 gccaggaagg ccgccccgaa ggcctagcac cattcgcggc tcggggtgga tacgcccagg
     1321 acggtcgagg ccgcgagacc acgagagaga acgcgcatga cgggatgcgc tgcctgacaa
     1381 gtagccggaa ccgccctgca acggcagggc ggttctttgt ttcggggagc gggcgcctgg
     1441 ccggatgaga cacccgccat gaccggtcgt catgaaatcc gggctcggag tggaagactt
     1501 gcccggagcg cgcccacctg ccggggctcg gtgggcgccg ttcagggaca agccgagtga
     1561 agaagaccgt ggaacggccc ccgttcccgt cggcgccgtc gagcgatctc gacgacgagc
//
LOCUS       DATDDI010000441         1856 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_51222, whole genome shotgun sequence.
ACCESSION   DATDDI010000441 DATDDI010000000
VERSION     DATDDI010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51222"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VIU37_06315"
     CDS             complement(<1..513)
                     /locus_tag="VIU37_06315"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013598.1"
                     /translation="MTAILLPELKNGSNGSPGRPTQTTPAAARRPAQAALLIEDASKR
                     FIVGRKRKPVVAISHVSMRLERGDIHGILGANGSGKSTLIRLISGLLTLDEGRVEVFG
                     HDIVRDEMAVKRLINRVSVDAAFFKKLSPMENLLVAARLYGMDGATAKREALQILARL
                     GIGANRTTRPI"
     gene            complement(885..1526)
                     /locus_tag="VIU37_06320"
     CDS             complement(885..1526)
                     /locus_tag="VIU37_06320"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013599.1"
                     /translation="MTSLPNLTIEPLTPDRFADVAALFEEGGDPKWCWCAYFRVRGVD
                     FSNAAKVRHRAVLETAVDDGAALGRAPGLVAYEADSAVGWISIGPREDYERLAHSKVL
                     APVDERPVWSIVCFVVARRARGHGVARALLDAGISYARDHGATTLEAYPVEIPEGSRI
                     ASSDVFRGTLAMFERAGFTVVARRQWNASTPERPIVRLDLGRDAPSRTGRVAG"
     gene            1631..>1856
                     /locus_tag="VIU37_06325"
     CDS             1631..>1856
                     /locus_tag="VIU37_06325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013600.1"
                     /translation="MRTRPGLGLAILVVVAACGGSPGSAGSTPTGTGATSSITPWSPA
                     EAPASEPSLASPVASPALNGSDLAVARIESI"
BASE COUNT          256 a          650 c          664 g          286 t
ORIGIN      
        1 gatcgggcgg gtcgtccggt tggcgccgat gcccagccgg gcaaggatct ggagtgcctc
       61 gcgcttggcc gtcgccccat ccatcccgta caggcgggcg gcgacgagca ggttctccat
      121 cgggctcagc ttcttgaaga acgcggcatc gacgctgacc cggttgatca gccgcttgac
      181 cgccatctcg tcgcgcacga tgtcgtgccc gaagacctcc acccggccct catcgagggt
      241 cagcagtccg gagatcagcc ggatgagcgt cgacttgccg gagccgttcg cccccaggat
      301 cccgtggatg tcgccgcgct cgaggcgcat cgacacgtgc gagatcgcga cgaccggctt
      361 gcgcttccgc ccgacgatga accgcttgct ggcgtcctcg atcagcaggg cggcctgggc
      421 aggacgtcgc gcggcggcgg gcgtcgtctg ggtcgggcgg cccggtgagc cgttcgagcc
      481 gttcttcagt tccgggagga ggatggcggt cacggtaggt gctccaggtg ctgcggaggc
      541 ttgacgtccg aaaacgggaa gagccgcggg ctccgacccg acgtgctcga cgtcgggggg
      601 cctcgcggct ctggtgtccc ggcctgccgg acgggcagga ctgggcatca aaaaagccgg
      661 gggcccatct ggcccacggc tcgtggttcg tccggagggc ggtcctgccg cctgcggtct
      721 agctcgagat gggcacagat ctcccgatgc cgtcggcgcc ggtaggcgca acgcatcggt
      781 ggaggaggaa cgtcttcgtc atcattcgga gccgcctcct tggtgggatc agtgcacgca
      841 acatgcgagc cggtcgggag tctacccggc gcgcggaacc ggtgtcaacc cgccacgcgg
      901 cctgtccggg acggcgcgtc gcgacccagg tcgaggcgca cgatcggtcg ttccggggtc
      961 gaggcgttcc actgccggcg ggcgacgacc gtgaagccgg cccgttcgaa catcgcgagg
     1021 gtgccgcgga agacgtcgga cgacgcgatc cggctgccct cggggatctc gaccgggtag
     1081 gcctccaggg tcgtcgcacc gtggtcgcgg gcgtaactga ttcccgcgtc gaggagcgct
     1141 cgggccacgc cgtgaccgcg ggcccgccgc gccacgacga agcagacgat cgaccagacg
     1201 ggccgctcgt cgaccggcgc caggaccttc gagtgcgcga ggcgctcgta gtcctcgcgc
     1261 ggcccgatgc tgatccagcc gactgcgctg tcggcttcgt acgccacgag acccggcgcg
     1321 cggcccagcg ccgcgccgtc gtcgaccgcc gtttcgagga ccgcccgatg ccgcaccttg
     1381 gccgcgttcg agaagtcgac accgcgaacg cggaagtagg cacaccagca ccacttgggg
     1441 tcgccgccct cctcgaacag cgccgcgacg tcggcgaagc ggtccggcgt cagcggctcg
     1501 attgtcaggt tcggaaggct cgtcacgggc gcatgttccc ccgggatctt gccagtcatt
     1561 ggcatgattc cacgatcgtc cgtccggccg cgtgtcggaa cgcttgtcag cgccgcctat
     1621 gatccgcggc atgcgcacga ggcctgggct cggtctggcg attctcgtgg tcgtcgcggc
     1681 gtgcggcggg tcgcccggct cggccggttc gacgccgacc ggaacgggcg ccacctcgtc
     1741 gatcacaccg tggtcgccgg ccgaggcccc ggcctcggag ccgtcactcg cgtccccggt
     1801 cgcgtcgccg gcgctcaacg ggtccgacct cgccgtcgcc cggatcgaat cgatcc
//
LOCUS       DATDDI010000442         1936 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_155348, whole genome shotgun sequence.
ACCESSION   DATDDI010000442 DATDDI010000000
VERSION     DATDDI010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155348"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1268
                     /locus_tag="VIU37_06330"
     CDS             <1..1268
                     /locus_tag="VIU37_06330"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013601.1"
                     /translation="PTDRSYRALLRVPSLGRILLGMAFARVAQAMVAIALVLFTLAEY
                     HSPELAGLVTFASVFPGIAISPIAGVLLDRHGRIRLMILDYVVAAAALALVAGLASAH
                     ALPAWLLVLIAVVMSLTSIFSSVGLRTLFPLIVPRHLWERANALDSNGYVVATIFGPP
                     IAASLVAFGGGPVALFAIGVIYGLTAVSMVGVQDPPTTVTATGTLLSDARAGLVYVWR
                     NRTLRGLGISVSVLNLTGGMTTIVVPLLVLRQLGANEALVGILFAISGVSGMISALVF
                     GRIDTRGREWVMLVLPPFGYAAAIALVLPVALAGPIGTPGALEPALGIGLIAAAQLLV
                     GLVNGPLDIALFTVRQRRTDPAWLGRAFAISMGFNFVGYPIGAALTGVIAASSLGGAV
                     VLGIGACLASGVLAAVLIPVRDPATEPAV"
     gene            1375..1929
                     /locus_tag="VIU37_06335"
     CDS             1375..1929
                     /locus_tag="VIU37_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HEY6013602.1"
                     /translation="MRKVVAICGASAALAAVATGSVVYWRRNPRIGTRFVNAVVNPRL
                     LGGGLAGGAKSELGTIEQFGRKSGIRRLTPVHPEPTRDGFRIVVPLGEHSEWARNVVA
                     AGHCRLQLHEHVYELDEPTMIPASDASDLPRVVRAVMGALGFRYLVLRTFSVNPGVLE
                     PTGTQPETAAPSEPPQPVPQEASI"
BASE COUNT          223 a          704 c          689 g          320 t
ORIGIN      
        1 acccgacgga ccgctcgtat cgggcgctgc tgcgtgtccc gtcgctgggc cggattctgc
       61 tcgggatggc gttcgcgcgg gtcgcccagg cgatggtcgc catcgccctc gtcctgttca
      121 cgctggccga gtatcactcg cccgagctgg ccgggctggt gacgttcgcg agcgtcttcc
      181 cggggatcgc catcagcccg atcgcgggcg tcctgctcga ccggcacggc cggatccgcc
      241 tcatgatcct cgactacgtc gtggctgcgg ccgccctggc gctggtggcc ggcctggcca
      301 gcgcccacgc gcttccggcc tggctgctgg tgctgatcgc cgtggtcatg tcgctgacct
      361 cgatcttcag ctccgtcggg ctgcggaccc tgttcccgct gatcgtgccg cgtcacctct
      421 gggagcgggc aaacgccctc gactcgaacg gctacgtcgt tgcgaccatc ttcggcccgc
      481 cgatcgcggc ctcgctcgtc gcgttcgggg gcgggccggt ggcgctgttc gcgatcgggg
      541 tgatctacgg gttgacggcc gtgagcatgg tcggcgtgca ggatccgccg acgacggtga
      601 cggcgaccgg gacgctcctg agcgacgcgc gggccgggct cgtctacgta tggcgcaacc
      661 ggacgctccg cgggctcggg atctcggtgt cggtcctcaa cctgacgggc gggatgacca
      721 cgatcgtcgt gcccctgctg gtcctgcggc agctcggggc caacgaggcg ctcgtcggga
      781 tcctgttcgc catctcgggc gtgtcgggca tgatctcggc gctcgtgttc ggccggatcg
      841 acacacgcgg ccgggaatgg gtgatgctgg tcctgccgcc gttcggctac gcagccgcga
      901 tcgcgctcgt gctcccggtg gcgctcgccg ggccgatcgg cacgcccggc gccctcgagc
      961 cggccctcgg gatcggcctc atcgccgcgg cccagctgct ggtcgggctc gtcaacggac
     1021 cgctcgacat cgccctgttc accgttcgac agcgccgcac cgacccggcc tggctcgggc
     1081 gggccttcgc gatctcgatg ggcttcaact tcgtcggcta cccgatcggc gcggccctca
     1141 ccggggtcat cgccgcgagc tcgctgggcg gcgcggtcgt gctcggcatc ggcgcctgcc
     1201 tggcgtcggg tgttctcgcc gccgtgctga tcccggtacg cgatccggcc acggaacccg
     1261 ccgtctgaac gagccggcgc ccgccgtcag ccgcgcgggc ctcgatttcg gggcaatcgg
     1321 cactgccctc aacgccgccc tggctgccac gatgacggca aaggagggcc tgccgtgcgc
     1381 aaggtcgtgg cgatctgcgg cgcgtcggcg gcactggccg cggtcgcgac cggttccgtc
     1441 gtctactggc gccgaaaccc gagaatcggg acccggttcg tcaacgccgt cgtcaacccg
     1501 aggctgctgg gcggagggct ggctggtggt gccaagtccg agctcgggac catcgagcag
     1561 ttcggccgga agtcgggcat ccgtcgcctg acgcccgtcc acccggagcc gacccgcgac
     1621 ggcttccgca tcgtggtgcc cctcggcgag cattccgagt gggcccgcaa cgtggtggcc
     1681 gccggacact gccgtctcca gctgcacgag cacgtgtacg agctggacga gccgacgatg
     1741 atcccggcga gcgacgcgag cgacctgccg cgggtcgtcc gcgccgtcat gggggcgctc
     1801 gggttccggt acctggtcct caggaccttc tcggtcaacc cgggagtcct cgaaccgacc
     1861 gggacgcaac cggagacggc ggccccgtcg gagccgcccc agccggtgcc acaggaagcc
     1921 tccatctagg ggccgg
//
LOCUS       DATDDI010000443         3302 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_405060, whole genome shotgun sequence.
ACCESSION   DATDDI010000443 DATDDI010000000
VERSION     DATDDI010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3302
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405060"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..921
                     /locus_tag="VIU37_06340"
     CDS             <1..921
                     /locus_tag="VIU37_06340"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6013603.1"
                     /translation="MALFVVYGFDTAGPFGEETIDAGRQAPRGVLASILISGAVGAVF
                     LLAVILAIPSIPDAMAEGQAGGFPIATTITAALTTELFAGITLGEVYLFVILASVFVC
                     TLAIQGAATRMMFSMSRDRHLPLGGLWGQVNHTFRTPANAAIAVGVLAALPILVVGPL
                     GGFFMSIAATGLIYLSYFLCNVGVLLARRRGWPHKPAWFNLGRWGMPINILALVWGGL
                     MIVNIGIWQDTGLFGDFGGDGRGFTNPAFGSFFTPFGTKIDNLPAWPTFEVLVAVILL
                     TGIVYYLAQVRGRAHDIESADAVTGEAVIG"
     gene            1005..1946
                     /locus_tag="VIU37_06345"
     CDS             1005..1946
                     /locus_tag="VIU37_06345"
                     /inference="COORDINATES: protein motif:HMM:NF013772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEY6013604.1"
                     /translation="MTEDQPLHGELRDDLVRAMQKVPELAGRELTLTPISGGITNRNF
                     RVDAAGADGAWVIRLAGNDTHLLGISREVEHAATVAAAGVGVGPEVTAFIRPEGYLVT
                     RFIVGSPVTDAAVHRPDTLRRVADSLRRIHDGPAIPGLFVPLRIADAYRALAIERGVP
                     IPPEYDLAAAIGRRIELAFLSNPLELRPCHNDLLNANFIDDGTRIRIIDWEYAGMGDP
                     FFDLGNFSINHELTPHEDELLLAAYDGEVRAGRLARLTLMRVVSDFREAMWGVLQQGI
                     SSLDVDFVAYAASSFDRLLANAATARFERALREAAGD"
     gene            1977..2822
                     /locus_tag="VIU37_06350"
     CDS             1977..2822
                     /locus_tag="VIU37_06350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013605.1"
                     /translation="MNPRLFGIAATRAPIVAILRRGPSDWSQVSRWDTAAGSVEPGAW
                     IRANLYPQRCDLSADGRWFAYFTLRASARWAVGPTYVAVSRLPWLTALAAWGTAGTWT
                     RGIQFTDHPRVLEVGRPDQGDIEPLGKRHRFGLEWTRPISFAVERRRGWSDAPGSPPY
                     DRERDPWDERRARSLVIQKPRPGGSGGSTLTVRGWFAAFRSGQPSWAGVTYAIAGVGE
                     ARSLDGVQWADWDSTGRLLVATTDGRLEVRHEPWDRTTVDWSFDLGGMRPEPMAPPAV
                     ASRWT"
     gene            2985..>3302
                     /locus_tag="VIU37_06355"
     CDS             2985..>3302
                     /locus_tag="VIU37_06355"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013606.1"
                     /translation="MVEHVRAVIIGGGVGGTSIAFHLTELGWTDVVLVDRAELTSGST
                     FHSAGLVGQLRSSVTLTRMMMYGSDLYRRLAAETGTDPSWHEVGSLRLASTPERFEEL
                     RRQA"
BASE COUNT          432 a         1188 c         1175 g          507 t
ORIGIN      
        1 atggccctgt tcgtcgtcta cggctttgac actgccggcc cgttcggcga ggagacgatc
       61 gacgccggcc ggcaggcgcc gcgcggcgtg ctcgcctcga tcctgatctc gggcgccgtc
      121 ggcgccgtct tcctgctggc cgtgatcctg gcgatcccga gcatccccga cgcgatggcc
      181 gagggccagg ccggcggctt cccgatcgcg accaccatca ccgccgccct gaccacggag
      241 ctctttgccg gcatcacgct gggcgaggtc tacctgttcg tgatcctggc ctcggtcttc
      301 gtctgcacgc tggccatcca gggagcggcc acccggatga tgttctcgat gagccgcgat
      361 cggcacctgc cgctcggtgg cttgtggggc caggtcaacc acacgttccg gaccccggcc
      421 aacgcggcga tcgcggtcgg cgtgctggcc gcgctgccga tcctggtggt ggggccgctc
      481 ggtggattct tcatgtcgat cgccgcgacc gggctgatct acctcagcta cttcctgtgc
      541 aacgtcggcg tcctgctcgc gcggcgtcgc ggctggccgc acaagccggc ctggttcaac
      601 ctcggccggt ggggcatgcc catcaacatc ctcgccctgg tctggggcgg cctgatgatc
      661 gtcaacatcg gcatctggca ggacaccggc ctgttcggcg acttcggtgg cgacggccgc
      721 ggcttcacca accccgcgtt cggctcgttc ttcacgccct tcggcacgaa gatcgacaac
      781 ctgccggcat ggccgacctt cgaggtcctc gtcgcggtca tcctgctgac ggggatcgtc
      841 tactacctcg cccaggtccg cggtcgcgcc cacgacatcg agtccgccga cgcggtcacc
      901 ggcgaggccg tgatcggcta gcgccagacg ttccacgcgc cgatgcggcg cggcgagcga
      961 tcgtcgcgcc gcatcgcgtc ccaggccgag gtgaccgccc gcccgtgacc gaggaccagc
     1021 cgctccacgg cgagctccgc gacgacctgg tgcgggcgat gcagaaggtg cccgagcttg
     1081 ccgggcgcga gctcacgctc accccgatct cgggcgggat caccaaccgc aacttccggg
     1141 tcgatgccgc cggcgccgac ggcgcgtggg tcatccggct ggcaggcaac gacacccacc
     1201 tgctcgggat cagccgcgag gtcgagcacg ccgcgaccgt ggccgccgcc ggcgtcggcg
     1261 tcgggccgga ggtcacggcc ttcatccggc cggagggcta cctcgtgacc cggttcatcg
     1321 tcggctcgcc ggtcacggac gcggcggtcc atcgtcccga cacgctccgg cgggtcgcgg
     1381 attctctccg gcggatccac gacgggccgg ccatcccggg gctgttcgtg ccgctgcgga
     1441 tcgccgacgc ctaccgcgcc ctcgcgatcg agcgcggcgt tccgatcccg cccgagtacg
     1501 accttgcggc ggccatcggc cgccggatcg agctcgcctt cctgtcgaac ccgctcgagc
     1561 tgcggccgtg ccacaacgac ctgctcaacg ccaacttcat cgacgacggg acgcggatcc
     1621 ggatcatcga ctgggagtac gccgggatgg gcgacccgtt cttcgatctc ggcaacttca
     1681 gcatcaacca cgagctcacc ccccacgagg acgagctcct gctggcggcc tacgacggcg
     1741 aggtccgcgc cggccggctc gcgcgactga ccctgatgcg cgtggtgtcc gatttccgcg
     1801 aggcgatgtg gggcgtcctc cagcagggga tcagctcgct cgacgtcgac ttcgtggcgt
     1861 atgcggcgtc gagcttcgac cggctcctgg cgaatgcggc gaccgcgcgc ttcgaacgcg
     1921 cgctgcgcga agccgccggc gattgaggcc atgcacgacc ccggcgccgg cagcccgtga
     1981 acccccgcct gttcgggatc gcggcgacac gtgcgccgat cgtggcgatc ctgcgtcgag
     2041 gccccagcga ctggtcgcag gtgagccgct gggacacggc cgcaggatcg gtcgagccgg
     2101 gcgcctggat ccgggcgaac ctgtacccgc agcgatgcga cctctcggcg gacggccgct
     2161 ggttcgccta cttcacgctc agggcgagcg cccgctgggc ggtcgggccg acctacgtcg
     2221 ccgtctcgcg cctcccgtgg ctgaccgcgc tcgcagcgtg ggggactgcc ggaacgtgga
     2281 cgcgaggcat ccagttcacg gatcatccgc gcgtcctgga ggtcggccgg ccggaccagg
     2341 gcgacatcga gccgctcggg aagcgccatc ggttcggact cgagtggacc aggcccatct
     2401 cgttcgccgt cgagcgtcga cgcgggtgga gcgacgcgcc cggctcgccg ccgtacgacc
     2461 gcgagcgcga tccctgggac gaacggcgcg cccggtcgct cgtcatccag aagccgagac
     2521 cggggggatc cggagggagc acgctcaccg tgcgggggtg gttcgccgcc ttccgctcgg
     2581 gccagccgtc ctgggcaggg gtgacctatg ccatcgccgg cgtcggggag gcgcggtccc
     2641 tcgatggcgt tcagtgggcg gactgggact cgaccggccg cctgctggtc gcgaccacgg
     2701 atggtcgact ggaggtccgt cacgagccgt gggaccggac cacggtggac tggtcgttcg
     2761 acctgggcgg aatgcgcccg gagccgatgg ccccgccggc ggtcgcgagc cggtggacat
     2821 gaggacatcc caggcacgaa aggaggcagt ggccgcccga ggctcggcat cggcggccgc
     2881 gtcccgccgc atgggctccc gcgatggcgt cgcgatggtg cggctacgct gacgctcccg
     2941 cgacccggga cggcccggcc gcagagcaga ggagtccgac gttcgtggtc gaacacgtcc
     3001 gggcggtgat catcggtggt ggtgtgggtg ggacgtccat cgccttccac ctgacggagc
     3061 tcggctggac cgacgtggtg ctggtggacc gggccgagct gacgtcgggt tcgaccttcc
     3121 actcggcggg cctggtcggc cagctgcgga gctccgtgac gctcacgagg atgatgatgt
     3181 acgggtccga cctgtaccgg cgcctggcgg ccgagaccgg caccgatccc tcgtggcacg
     3241 aggttggctc gctccggctg gcgtcgacgc cggagcggtt cgaggagctg cggcgccagg
     3301 cc
//
LOCUS       DATDDI010000444         1531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_51322, whole genome shotgun sequence.
ACCESSION   DATDDI010000444 DATDDI010000000
VERSION     DATDDI010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51322"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VIU37_06360"
     CDS             complement(<1..240)
                     /locus_tag="VIU37_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide/dihydroorotate dehydrogenase-like
                     FAD/NAD-binding protein"
                     /protein_id="HEY6013607.1"
                     /translation="MHHVLVNERLSPNVTRLVIDAPRIAEIRQPGQFVIVHLGPGAER
                     IPLTIADGDREAGTISLVIQAIGKSTADLVDVPVGG"
     gene            complement(396..1211)
                     /locus_tag="VIU37_06365"
     CDS             complement(396..1211)
                     /locus_tag="VIU37_06365"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6013608.1"
                     /translation="MTGQQDDTRLIATEHEAYNATLVRREDDTPDLARFWVRFDAEPV
                     PFEAGQYMTVGVFVDGKLLQRPYSVASSPRTAADGYELYVRLVPIFRFTSAMWRLPIG
                     HRMRMIGPKGRFMLEPDDDRTHLFVSTGTGIAPFIAMMRTLLIDGAPRRTVLVNGASY
                     VHDLGYRDLLEDWQRSGEYPVTYVPTVSRPNDPVNAGWTGHTGRAESVVLDVCREQGL
                     RPESTVVYICGNPDMILNVEAELMGAGFPEFHVKKELYWPKGKDAGLAGAAAG"
BASE COUNT          218 a          515 c          567 g          231 t
ORIGIN      
        1 gcccccgacc ggcacgtcga cgagatcggc ggtgctcttg ccgatggcct ggatgacgag
       61 gctgatcgtc ccggcctccc gatcgccgtc ggcgatcgtg agcgggatgc gctcggcgcc
      121 cggtcccagg tggacgatca cgaactggcc cggctggcgg atctcggcga tccgcggggc
      181 atcgatgacg agccgggtca cgttgggaga caggcgctcg ttgacgagca cgtggtgcac
      241 ggtcaggacg ctccgagtgc ggattccttg acctcgatcc tcgccgcgcg gccagcccgc
      301 gcttgagagc ctgctcgccc ggatcgagcg ggccgaacgt cacgaagccg ccgctgccgc
      361 agcgatcgcg agcgcccgcg ctcgggcggc ggcgactagc ccgcggccgc ccccgcgagc
      421 ccggcgtcct tgcccttcgg ccagtagagc tccttcttga cgtggaactc ggggaagccc
      481 gcgcccatga gctcggcctc gacgttgagg atcatgtccg ggttgccgca gatgtagacg
      541 accgtggact cgggccgaag gccctgctcg cgacagacat cgaggacgac cgattccgct
      601 cgaccggtgt ggcccgtcca gccggcattc accgggtcgt tcggccgtga gaccgtcggg
      661 acgtaggtca ccgggtactc gccgcttcgc tgccagtcct ccagcaggtc ccggtagccg
      721 aggtcgtgga catacgacgc gccgttgacg aggaccgtgc ggcgcggcgc accgtcgatc
      781 agcagcgtcc gcatcatcgc gatgaagggc gcgatgccgg tgcccgtcga gacgaacagg
      841 tgggttcgat cgtcgtccgg ctcgagcatg aaccgaccct tgggtccgat catgcgcatc
      901 cggtggccga tcggaaggcg ccacatggcc gacgtgaacc ggaagatcgg cacgagccgg
      961 acatagagct cgtagccgtc ggcggcggtg cgcggcgagg aggccacgct gtacgggcgc
     1021 tggaggagct tgccgtcgac gaagaccccg acggtcatgt actgcccggc ctcgaacggc
     1081 acgggctcgg cgtcgaaccg cacccagaag cgagccaggt cgggtgtgtc gtcctcgcgg
     1141 cggacaaggg tggcgttgta cgcctcatgc tcggtcgcga tgaggcgcgt gtcgtcctgc
     1201 tggccggtca tgctcgggtg ggctctcctt gcgtcccggg tggtgccacg gacgccgggc
     1261 tcgatggtac cggccgaggc gcgtcggggt tcgtcggcgg cctggcggcg agcatccctg
     1321 cccggttgag caggcccggg atgggccgca tggcccgcga gatcgggacc gaagggacac
     1381 cccacgtcag gctcgccggc ggacagtcgc gccatgacca gagccgttgt cgtgagctgg
     1441 gacgcctggc tcgccgggcg tgacgcggag acgctgcgtg gtgccggcta cgtggtcgag
     1501 acctgcggcg gtcctcgcca ggagccctgc c
//
LOCUS       DATDDI010000445         1531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_529849, whole genome shotgun sequence.
ACCESSION   DATDDI010000445 DATDDI010000000
VERSION     DATDDI010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529849"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VIU37_06370"
     CDS             complement(<1..363)
                     /locus_tag="VIU37_06370"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEY6013609.1"
                     /translation="MSADDQVYVQALALGLDPAWRRRGPDERHDDGCRFAEAESAAGA
                     DGVRSIAYSSIGLEPGVDLLLWRMAPSVDALERAAAGLLRAGLGAWLTVRESFIGRIG
                     PSQYVRKPTDQEQSLFAGE"
     gene            complement(360..1400)
                     /gene="hemB"
                     /locus_tag="VIU37_06375"
     CDS             complement(360..1400)
                     /gene="hemB"
                     /locus_tag="VIU37_06375"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEY6013610.1"
                     /translation="MTLEMWARPADAAPAVASTVAPPAIRLRRLRRSPALRALVRETR
                     LHPSMLVAPLFVRAGSGVREPIPSMPGVARLSPDEAAAEAARLAELGVGGVLLFGLPD
                     AKDALGSGASIDDGIVQEAFGRIRALELPLVAIADTCLCEYTDHGHCGPLAADGSVDN
                     DAALVRLADTAVSQARAGADVVAPSAMMDGQVAAIRSALDAAGLEETAIMAYASKHAS
                     AFYGPFREAADSAPAFGDRRGYQMDPANGREAMREIALDVAEGADLLLVKPALPGLDL
                     IAAARARFDLPIAAYQVSGEYAMLMAAAERGWLDGRRAMTEAVTAIVRAGAGIVITYA
                     AADLATWLREDR"
BASE COUNT          212 a          569 c          568 g          182 t
ORIGIN      
        1 ctccccggcg aacagcgact gttcctggtc ggtcggcttg cggacgtact gcgacggccc
       61 gatccggccg atgaacgact ctcgaaccgt cagccaggca ccgagcccgg cgcgcagcag
      121 cccagccgcc gcgcgctcca gcgcgtcgac cgagggcgcc atccgccaca gcaggagatc
      181 gacgccgggc tccagcccga tcgacgagta ggcgatgctg cgcaccccgt cggcgcccgc
      241 ggcggactcc gcctcggcaa accggcatcc gtcgtcgtgg cgttcgtcgg gacctcggcg
      301 gcgccaggcg ggatccagcc cgagggcaag tgcctggacg tagacctggt cgtcggcgct
      361 catcggtcct cccggagcca ggtcgcgagg tccgcggcgg cgtaggtgat gacgatcccg
      421 gcacccgccc ggacgatggc cgtcaccgct tcggtcatgg cgcgccggcc gtccagccag
      481 ccacgctccg cggcggccat cagcatcgcg tactcgcccg acacctggta cgcggcgatc
      541 ggcaggtcga agcgggcgcg ggcagcggcg atcaggtcga gtcccgggag cgccggcttc
      601 accagcaaca ggtcggcccc ttcggcgacg tcgagcgcga tctcgcgcat cgcctcgcgc
      661 ccgttggccg ggtccatctg gtagccccgc cggtcgccga aggccggcgc gctgtccgca
      721 gcctcccgaa acggtccgta gaacgccgag gcatgcttcg aggcgtaggc catgatcgcg
      781 gtttcctcga ggccggcggc gtcgagcgcc gagcggatcg cagcgacctg gccgtccatc
      841 atcgcgctcg gggcgaccac gtcggcgccg gcccgggcct ggctcacggc agtgtcggcc
      901 agccggacca gggccgcgtc gttgtccacc gagccgtcgg cggcgagcgg gccgcaatgg
      961 ccgtgatcgg tgtactcgca caggcacgta tcggcgatcg ccaccagcgg gagctccagc
     1021 gcgcgaatgc ggccgaacgc ctcctggacg atcccgtcgt cgatcgaggc gcccgacccg
     1081 agcgcgtcct tggcgtcggg caggccgaac aggaggaccc cgccgacgcc gagctcggcg
     1141 agccgggcgg cctcggcggc cgcctcgtcc ggcgacaggc gggcgacacc cggcatggac
     1201 gggatcggct cgcggacgcc gctccccgcc cggacgaaga gcggcgcgac gagcatcgac
     1261 ggatggagcc tcgtctcccg gaccagggcc cgcaacgccg gtgaccggcg aagacggcgc
     1321 agccggatgg cgggcggcgc cacggtgctg gcgacggcag gggccgcgtc ggcgggacgc
     1381 gcccacatct cgagtgtcat cgaacctcca ggggctggtc ggcgaggact tgtgcagtag
     1441 cggcggcgag tccggccgcg tcgggatcgg tggcgacggc acgcacgctg aagccggccg
     1501 cccgcgctcg gtcggcggtc tccgggccga t
//
LOCUS       DATDDI010000446         3164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_300986, whole genome shotgun sequence.
ACCESSION   DATDDI010000446 DATDDI010000000
VERSION     DATDDI010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300986"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VIU37_06380"
     CDS             complement(<1..363)
                     /locus_tag="VIU37_06380"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6013611.1"
                     /translation="MTTAASTKQTHHDQYIDGAWVPSADGRTFEDVNPYTGQVIGTVA
                     AATRDDARRAIEAASAAFPAWAATPPAVRQRIFLAAADILERRRDEVVGLLATETGCT
                     FGFAMFQMGFVPGLFRQAA"
     gene            complement(404..1453)
                     /locus_tag="VIU37_06385"
     CDS             complement(404..1453)
                     /locus_tag="VIU37_06385"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY6013612.1"
                     /translation="MTASPGRLRVERWSRQSLIRTALIGLVLVGLFFVPTVFDPNVTQ
                     KLTGLWILILIAAMWNALAGYGGLVSVGQQAFIGIGAYATIYLAHAGVDGYLAMAMAV
                     LFTAAFGFVTSFVALRLKGGEFAIAMWVIAEVFRQLVSLDGSVGGGTGISFTGLSGID
                     PDYRRAFTYWWVLAAVVVAVLVLFFLLRSRHGAALQAIRDDEVAASSLGVRVLSSKRL
                     IFVLTSTGCGAAGAAILANTLFVQPNTIFSVQWTAMMIFMVLVGGLGTFEGPIIGAVI
                     LFLLQDQFGNGGVWYLVGLGTTAILFALFLPRGIWGTITDRFEIPLAPIGYWVRGQPS
                     LQAAATADASDETQP"
     gene            complement(1450..2322)
                     /locus_tag="VIU37_06390"
     CDS             complement(1450..2322)
                     /locus_tag="VIU37_06390"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY6013613.1"
                     /translation="MIWVNAIIAGVLLGGLYALFACGLSLMYGVMRIINLAHGDLAVL
                     GAYLVLGLAMALGVEPILVLPVAVILMGILGYVLQRSLLERSLRAGPLVPLLTSFGLA
                     IVIQNLLQEVSTPDSRSIDGGALTTASLRISDQLSIPVLGLVIFSVAIALLGGLHLFL
                     SRTDLGRSMRATAQDPDTAELIGIDSRHMYGLATAIAVGTVTIAGTFFGMRSSFSPLA
                     GPTQLIFAFETVVIGGIGSLWGTLVGGIVLGVAQTIGAQINPQYPVLFGNLVFLVVLI
                     IRSSRAVGGRMSRA"
     gene            complement(2319..3044)
                     /locus_tag="VIU37_06395"
     CDS             complement(2319..3044)
                     /locus_tag="VIU37_06395"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013614.1"
                     /translation="MSLLEVDSVVARHGSLTAVRNVSLAVDQGSTLALVGANGAGKTT
                     LLRVIAGAHVPSEGRVRLDGVDVTGLGAHERVRLGVALVPEGRKLFPDLTVEENLRTA
                     RGKGLTGRWTVETVFDAFPILRPLARRRASALSGGEQQATAIGRALMCNPRLLLLDEV
                     SLGLSPIAVDGVYASLQTIMAEGGSTVLIVEQDLRRAMAVAGQIACMLEGRIVLAGTA
                     GTLTREEITEAYFGLKKSPAGPA"
BASE COUNT          572 a         1100 c         1079 g          413 t
ORIGIN      
        1 ggcggcctgc cggaagagcc ccggcacgaa ccccatctgg aacatcgcga agccgaacgt
       61 gcagcccgtc tcggtcgcca gcagcccgac gacctcgtcc cgccgtcgct ccaggatgtc
      121 tgcagcggcg aggaagatgc gctggcgtac cgccggcggc gtcgcggccc aggccgggaa
      181 cgccgccgag gccgcctcga tggcgcgccg ggcatcgtcg cgtgtcgccg ccgccacggt
      241 cccgatcacc tggccggtgt aggggttcac gtcctcgaac gtccggccat ccgcggacgg
      301 cacccaggcg ccgtcgatgt actggtcatg atgcgtctgc ttcgtgcttg ccgcggttgt
      361 catcgcctgt ctcccttgct aggacactac cgggaccgtg ccctcacggt tgcgtctcgt
      421 cggatgcgtc ggccgttgct gcggcctgga ggctgggctg accgcgcacc cagtagccga
      481 tcggcgccag cgggatctcg aatcgatcgg tgatcgttcc ccagatccca cggggaagga
      541 acaaggcgaa caggatggcc gtcgtcccga ggccgaccag gtaccagacg ccgccgttcc
      601 cgaactggtc ctggaggagg aacaggatca ccgccccgat gatcgggccc tcgaacgtcc
      661 cgagcccgcc gaccaggacc atgaagatca tcatcgcggt ccattggacc gagaagatcg
      721 tgttcggctg gacgaacagc gtgttggcca ggatggccgc gccggcggcc ccgcaaccgg
      781 tgctcgtcag gacgaagatc agccgcttgc tcgagaggac gcggacaccg agcgatgacg
      841 cagccacctc gtcgtcgcgg atcgcctgga gggccgcgcc gtggcggctt cgcaggagga
      901 agaagaggac cagcacggcg acgaccacgg ccgccagcac ccaccaatag gtgaacgccc
      961 gccgatagtc cgggtcgatg ccgctcaggc ccgtgaacga gatgccggtc ccgccgccga
     1021 cggagccgtc cagcgacacc agctgcctga agacctccgc gatgacccac atcgcgatcg
     1081 cgaactcgcc acccttgagg cgcagggcca cgaatgaggt gacgaacccg aacgccgcgg
     1141 tgaacaggac cgccatggcc atcgcgaggt agccatccac gcccgcgtgg gccaagtaga
     1201 tggtcgcgta ggcgccgatc ccgatgaacg cctgttggcc gaccgacacg agaccaccgt
     1261 agccggccag ggcgttccac atggcggcga tcaggatcag gatccacagg ccggtcagct
     1321 tctgggtgac gttgggatcg aagaccgtcg gcacgaagaa gaggccgacg aggacgaggc
     1381 cgatgagggc ggtccggatg agcgactggc gcgaccagcg ctcgacccgg agccgcccag
     1441 gggacgcggt catgcccggg acatccttcc gccgacggcg cgactgctgc gaatgatcag
     1501 gaccaccagg aagacgaggt tcccgaacag gaccgggtac tgcgggttga tctgggcgcc
     1561 gatcgtctgc gcgacgccga gcacgatacc gccgaccagc gtgccccaca gcgacccgat
     1621 cccgccgatg accacggtct cgaaggcgaa gatcagctgg gtgggtccgg cgagcgggga
     1681 gaagctcgat cgcatgccga agaacgtgcc ggcgatcgtg accgtgccga ccgcgatcgc
     1741 cgtcgcgagt ccgtacatgt gcctcgagtc gatgccgatc agctccgccg tgtcggggtc
     1801 ctgggcggtg gcccgcatcg agcgccccag gtccgtccgg ctgaggaaca ggtggagacc
     1861 gcccagcagg gcgatcgcga ccgagaagat cacgaggccg aggaccggga tcgacagctg
     1921 gtcgctgatc cgcaggctcg ccgtcgtcag ggcgccgcca tcgatcgacc ggctgtccgg
     1981 tgtcgagacc tcctggagca ggttctggat gacgatggcc aggccgaacg acgtcaggag
     2041 cgggacgagc ggtccggcac gcaggcttcg ctcgaggagc gaccgctgga gcacgtaccc
     2101 gagaatcccc atcaggatca cggcgaccgg gaggaccagg atcggctcga cgccgagggc
     2161 catggccagg ccgaggacga gataggcgcc aaggacggcg aggtccccgt gggccagatt
     2221 gatgatccgc atgaccccgt acatgagcga caacccgcag gcgaacagcg cgtagagccc
     2281 cccgagcagg acgcccgcga tgatcgcgtt gacccagatc acgccggacc cgccgggctc
     2341 ttcttcaagc cgaagtacgc ctcggtgatc tcctcgcgcg tcagggtccc ggccgtcccg
     2401 gcgaggacga tccgcccttc gagcatgcag gcgatctggc ccgcgacagc catcgcgcgg
     2461 cggagatcct gttcgacgat caggaccgtc gaaccgccct ccgccatgat ggtctgcagg
     2521 ctggcgtaga caccgtcgac cgcgatcgga gacagaccga gcgagacctc gtccagcaac
     2581 agcaaccggg gattgcacat cagcgcccga ccgatcgccg tcgcctgctg ttcaccgccc
     2641 gacagcgcgg acgcccggcg ccgagcgagg ggacgcagga tgggaaaggc atcgaagacg
     2701 gtctcgaccg tccaccgtcc cgtcaagccc ttgcccctgg cggtccggag gttctcctcg
     2761 accgtcaggt ccggaaagag cttccggcct tccggaacga gcgccacgcc gagccggact
     2821 cgctcgtggg cgcccaggcc cgtgacgtcg acgccgtcca ggcggacgcg accctcgctc
     2881 gggacgtggg ctccggcgat gacgcgcagg agcgtcgtct tgcccgcccc gttcgcgccg
     2941 acgagggcca gcgtggaacc ctgatcgacc gccagcgaaa cgttgcgcac ggcggtcagc
     3001 gagccatgcc gcgccacgac cgaatcgacc tcgagcaggc tcattcgcgg cgcccgaggt
     3061 aggcatcgat cacccgggca tcctggagca cctccgcagg ggagccgtcg gcgatcacct
     3121 tgcccgcatc catgcagacc aggcgatcga tcgccctgac gagg
//
LOCUS       DATDDI010000447         1703 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_654604, whole genome shotgun sequence.
ACCESSION   DATDDI010000447 DATDDI010000000
VERSION     DATDDI010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_654604"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VIU37_06400"
     CDS             complement(<1..198)
                     /locus_tag="VIU37_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013615.1"
                     /translation="MTTSISGSAPRLSIAAAIWARIVSRAGQPRKVGVNSTRTRSPST
                     STSRTTPSSTSETTGISGSGIS"
     gene            208..450
                     /locus_tag="VIU37_06405"
     CDS             208..450
                     /locus_tag="VIU37_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013616.1"
                     /translation="MVDRQDHPVGREKLREAGFAPPAPREATAPKLVQLQSKVFRCPY
                     CNSTETRLENIFGPTPCRSLRYCESCRQPFEQFKTI"
     gene            718..1536
                     /locus_tag="VIU37_06410"
     CDS             718..1536
                     /locus_tag="VIU37_06410"
                     /inference="COORDINATES: protein motif:HMM:NF012486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosinase family protein"
                     /protein_id="HEY6013617.1"
                     /translation="MPTKDMERMQHMRMPAHEPAMTSFAQMMLMLDPKLLERLKLPPW
                     FPLLDERRDQATLTATQQERFLCAFSTLVGNGSLGGLVKIHGETHYQHGTERFLPWHR
                     VFLRVLEQQLQTVHPDVTIPYWDWADPKEETFPAWLAGYAPTVPMPSPLAPVTVTRSP
                     GTPADLATLASNLPTIMGYSSFSSFTSSLESVHGGVHVWVGGTMSFIATAPADPIFWM
                     HHANIDRLWWQWQQAHPGVNPSLSGTGASSPVMDPWSTTEPQTRDIHAMGFTYV"
BASE COUNT          262 a          612 c          567 g          262 t
ORIGIN      
        1 ggagatcccc gacccggaga tccccgtcgt ctcgctggtc gagctcggcg tcgtccgcga
       61 ggtcgaggtc gacggcgacc gcgtgcgggt cgagttcacg ccgaccttcc tcggctgccc
      121 cgccctcgag acgatgcgcg cccagatggc cgcagcgatc gagagcctcg gcgccgagcc
      181 ggagatcgag gtcgtcaccg acgactcgtg gtcgaccgac aagatcaccc cgtcggccgc
      241 gagaagctgc gcgaagccgg cttcgctccg ccggctcccc gcgaggccac cgcgccgaag
      301 ctcgtgcagc tgcagtcgaa ggtcttccgc tgcccgtact gcaactcgac cgagacccgc
      361 ctggagaaca tcttcggccc gaccccgtgc cgctcgctcc gctactgcga aagctgccgc
      421 cagccgttcg agcagttcaa gacgatctag ctagctagtt catctcgccg cacgtcgagg
      481 ccgtgctgcg gatcctggcg aagatcggct acgtcgcgtc gtcctcgtgc ctgcaaagaa
      541 cggtgccggc aggcgctcgc aggtaggtca ccgtgcaccg tggccaagcc gccgttgacg
      601 gccgtcgcgt gccgcgagac actgacgtag cgggttcgct ccgcggttgc ggcggcgctg
      661 ttggcggttc ccggcccgtt ctcgcgcctc catgtcagcc gggtggagga ggacgcgatg
      721 cccacgaagg acatggagcg gatgcagcac atgcgcatgc cggcccacga gccggcgatg
      781 acgtcgttcg cgcagatgat gctgatgctc gacccgaagc tgctcgagcg gctgaagctg
      841 ccgccctggt tcccgcttct cgacgagcgc cgcgaccagg cgacgctgac cgcgacccag
      901 caggaacggt tcctctgtgc cttcagcacg ctcgtcggca acgggtcgct cggcgggctg
      961 gtgaagatcc acggcgagac ccactaccaa cacgggactg agcgcttcct gccctggcac
     1021 cgcgtcttcc tgcgcgtgct cgagcagcag ctgcagacgg tgcacccgga cgtgacgatt
     1081 ccgtactggg actgggccga cccgaaggag gagacgttcc cggcctggct cgccggctac
     1141 gcgccgacgg tgccgatgcc gtcgccgctg gcgccggtga ccgtgacccg ctcgcccggc
     1201 accccggccg atctcgccac gctggcctcg aacctaccga cgatcatggg ctacagcagc
     1261 ttctcctcgt tcacgtccag tctcgagtcg gtgcacggcg gcgtccacgt ctgggtcggc
     1321 ggcacgatgt cgttcatcgc gaccgcaccc gcggacccga tcttctggat gcaccacgcc
     1381 aacatcgacc ggctctggtg gcaatggcag caggcccacc ccggcgtcaa cccgagcctg
     1441 agcggcaccg gcgcatcgag cccggtgatg gacccctggt cgacgaccga gccacagacg
     1501 cgcgacatcc acgcgatggg cttcacctac gtctgagcac gtccgttcgg cgggcggggt
     1561 tcgccgaata ccccgcccgc ctaggctcgt cgatcgcaga cgaggacgcc gcgttcggtg
     1621 gcgagggagc agccgaggag atgggcgatc tcggcgttgc cgaggccttc ggcgtcatgg
     1681 cggaggatcg cgatccggta gtc
//
LOCUS       DATDDI010000448         1512 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_509145, whole genome shotgun sequence.
ACCESSION   DATDDI010000448 DATDDI010000000
VERSION     DATDDI010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_509145"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VIU37_06415"
     CDS             complement(<1..202)
                     /locus_tag="VIU37_06415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013618.1"
                     /translation="MTRRALPGLALAAAAILAGCTSGGAPTGGAPSGGTPGTSSPALD
                     GHTYLSTAIDGADLVPGTQVRLA"
     gene            complement(276..719)
                     /locus_tag="VIU37_06420"
     CDS             complement(276..719)
                     /locus_tag="VIU37_06420"
                     /inference="COORDINATES: protein motif:HMM:NF024055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HEY6013619.1"
                     /translation="MSETGTAKTAAVVYRSHTGRTRQFAEEIAAHLRTQGIETEVVSV
                     GEADVARLATVDYLLLGCWTNGLFVILQHPDEPWLAFVRDLPSITRPRVGLFTTYQLL
                     TGSMFAKMRAALAGKAPVPGLELKSRDSRLSERDKEALTRFVAGG"
     gene            complement(716..1183)
                     /locus_tag="VIU37_06425"
     CDS             complement(716..1183)
                     /locus_tag="VIU37_06425"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY6013620.1"
                     /translation="MRTTRHQIDEFLALKRVAVVGVSRDPKELSTTIWQELRQRRYDA
                     IPVNPKTDLIDGQRCYASVRDIQPPVDGVLIMTTPGVTETVVRDCAAAGVKHVWMHKG
                     IGRGSVSAEAVQFCDANGIDVVEGFCPYMFLPGTPVFHGIHAFGKKLTGSYPR"
     gene            complement(1318..>1512)
                     /locus_tag="VIU37_06430"
     CDS             complement(1318..>1512)
                     /locus_tag="VIU37_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013621.1"
                     /translation="FIQIRGDAELVTDGAVEPLDELTRKYTHHPCFYGHVYPAEQAAR
                     ETRVIGRIHARRVTVDAIHA"
BASE COUNT          203 a          521 c          550 g          238 t
ORIGIN      
        1 aggcgagccg gacctgggta ccgggcacga ggtccgcgcc gtcgatcgcg gtcgacaggt
       61 acgtgtggcc gtcgagcgct ggggacgatg tgccgggcgt tcctccgctc ggggcccccc
      121 cggtgggcgc tccgccggac gtgcagccgg ccaggatggc cgcggcggcc agggccagac
      181 cggggagggc tcgtcgcgtc atggcgccgg gacggcgtgg cacgggcagc ggttccggcg
      241 gggggccgcc gtaatcccgg cggccgcccc gatcctcagc cgccggcgac gaaccgcgtc
      301 agggcctcct tgtcgcgctc cgagaggcgg ctgtcccgtg acttgagctc caggcccggc
      361 accggcgcct ttccggccag cgcagcgcgc atcttcgcga acatgctgcc ggtcaggagc
      421 tggtacgtgg tgaacaggcc gacccggggc cgcgtgatcg acggcaggtc gcggacgaac
      481 gcgagccacg gctcgtcggg gtgctggagg atcacgaaca ggccgttcgt ccagcacccc
      541 agcagcaggt agtccaccgt cgccaggcgg gccacgtcgg cctcgccgac cgagacgacc
      601 tcggtctcga tgccctgcgt gcggaggtgc gcggcgatct cctccgcgaa ctgccgggtc
      661 cggcccgtgt ggctccggta gacgaccgcg gcggtcttcg ccgtccccgt ttcgctcacc
      721 gcgggtagct cccggtgagc ttcttgccga aggcgtggat gccgtggaag accggcgtgc
      781 ccggcaggaa catgtacggg cagaagccct cgacgacgtc gatgccgttc gcgtcgcaga
      841 actggaccgc ctcggcgctc accgatccgc gccctattcc cttgtgcatc cagacgtgct
      901 tgacgccggc cgcggcgcag tcgcggacga cggtctcggt cacgcccggc gtggtcatga
      961 tcaggacgcc atcgaccggc ggctggatgt cacggacgct cgcgtagcag cgctgtccat
     1021 cgatcagatc cgtcttcgga ttgacgggga tcgcgtcgta gcgtcgctgt cgaagctcct
     1081 gccagatcgt ggtggacagc tccttcgggt cgcgcgagac gcccacgacc gcgacgcgct
     1141 tgagcgccag gaactcgtcg atctgatgcc tcgtggtacg catgttgggc tccctcgtgc
     1201 ctgtggtgtc cggtcctctc gggacactcg cctgcgcacc atatgcaccg aacgtccggc
     1261 gcaccgccag tgccagactg cccgtttgag gaccgcgaac cgtccggccc gaagcgccta
     1321 cgcgtggatg gcgtcgacgg tgacccgccg tgcgtggatg cgaccgatga cccgggtctc
     1381 cctggccgcc tgctcggccg ggtagacgtg gccgtagaag cagggatggt gggtgtactt
     1441 gcgggtcagc tcgtcgaggg gttcgacggc gccgtccgtg acgagctcgg cgtcgccgcg
     1501 gatctggatg aa
//
LOCUS       DATDDI010000449         3061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_72477, whole genome shotgun sequence.
ACCESSION   DATDDI010000449 DATDDI010000000
VERSION     DATDDI010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3061
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72477"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1050
                     /gene="secF"
                     /locus_tag="VIU37_06435"
     CDS             <1..1050
                     /gene="secF"
                     /locus_tag="VIU37_06435"
                     /inference="COORDINATES: protein motif:HMM:TIGR00966.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEY6013622.1"
                     /translation="AVTPDQVKGVFAAQGLEASAVATGSGFIEIKTQQIVGLETNQPA
                     ATPVATLNPSSSAGSAAASGSAGASASSAPSASVAPSASVAPSPSASASAAPSASASA
                     GPSASPGASASPSASAGPVGNTQIPTQGKLGEVATALQKELGPIAEQRSLTTIGAVVS
                     SELVTQAIILILVGSAGILLWITFRFHDVKFGVTALIALLHDVIVVVGTFAILGTFFK
                     VEIDALFVTAMLTVIGFSVHDTIVVFDRVRENKARHAGEPIDAIVNHSVLQTFGRSIM
                     TSLTVVLTLLALFLFGGSAISDFILALLIGIVSGTYSSIFVASPLLVDWQLYDDRRRG
                     RLVAARAPRVRRSAS"
     gene            1111..2874
                     /gene="recJ"
                     /locus_tag="VIU37_06440"
     CDS             1111..2874
                     /gene="recJ"
                     /locus_tag="VIU37_06440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEY6013623.1"
                     /translation="MVEARFRWTFPEAAPLPGDLAGAAERAGISPRLAGLLARRGVRT
                     ADDLAAWFGEPLDGLHDPALLPDAGRLLDRVRRARDAGETVQVFGDFDADGLTGLAIL
                     TTALRRFGVDAIPYVPSRLDEGHGLSLAALDAAEARGVSLIVTVDCGSTSHAEIAAAN
                     RRGLDVIVTDHHRVPEVMPPAYALVNPHRADATYPDRRLAGSGVAFKIAQLLLADLPD
                     GARAALDLADLATIGTVADVSPIVGENRAIARIGLDRIRRDPRPGIAALLERARIDPA
                     AVDLETVAFALAPRLNAAGRMGEAMEAARLLLAEDPAEATHHADALEAANLARRDLTR
                     TVVAEARAMAATAPGAPATVVHGPWSVGIVGLVAARLVEDEGRPAVVGAELGDVIRAS
                     CRSDGSLDLGAALEQCGDLFLRHGGHAGAAGFELPADRWDAFRERFLDLAAAAAPPDP
                     RVAIAIDLALPARDVDYGLYRELARLAPCGPGNADACVAVLGMTVTRVRAANGGHSQL
                     TLRRDLDVLDGIAFGRPDIAEVVHEGDRLDVVARLTSRTFGGFESLQLDIRDVATAGS
                     HPETAAILGAGASLAAVGGIP"
BASE COUNT          378 a         1139 c         1086 g          458 t
ORIGIN      
        1 gcggtcacgc ccgaccaggt gaagggcgtc ttcgcggccc agggactcga ggccagcgcg
       61 gtcgcgaccg gctccggttt catcgagatc aagacacagc agatcgtcgg tctcgagacc
      121 aaccagccgg ccgccacgcc ggtcgcgaca ctcaacccga gctcgagcgc gggctcggcg
      181 gccgcgtccg gcagcgcggg cgccagtgcc agcagtgccc cgagcgcgag cgtcgcccca
      241 agcgcgagtg tcgctccgag cccctcggcc tcggcgtccg cggcgccatc cgcctccgca
      301 tcagccggtc cgtccgcgtc gcccggcgcc tccgcctcgc catccgcctc cgccggcccg
      361 gtcggcaaca cgcagatccc gacccagggc aagctgggtg aggtggccac agccctgcag
      421 aaggagctcg ggccgatcgc cgagcagcgt agcctgacca cgatcggtgc ggtcgtgagc
      481 tccgagctcg tgacgcaggc gatcatcctg atcctcgtcg gctcggccgg gatcctgctg
      541 tggatcacct tccgcttcca tgacgtgaag ttcggcgtca ccgcgctgat cgcgctgctc
      601 cacgacgtca tcgtcgtggt cggcacgttc gccatcctgg ggacgttctt caaggtcgag
      661 atcgacgccc tgttcgtgac cgccatgctg accgtcatcg gcttcagcgt gcatgacacg
      721 atcgtggtgt tcgaccgcgt tcgggagaac aaggcccggc acgccggcga gccgatcgac
      781 gcgatcgtca accactcggt gttgcagacc ttcggccggt cgatcatgac cagcctgacc
      841 gtcgtcctga ccctgctcgc gctgttcctc ttcggcgggt cggcgatcag cgacttcatc
      901 ctcgcgttgc tgatcgggat cgtgtcggga acctactcgt cgatcttcgt ggccagcccg
      961 ctcctggtcg actggcagct gtacgacgat cgccggcgcg gtcgcctggt cgcggcccgt
     1021 gccccgcggg tccgccgctc ggcctcctga catcaccgtc gccggtggct ggtaagccct
     1081 ggtgaagccg ttggtggcat cctgaccggc atggtcgagg ctcgcttccg ctggacgttc
     1141 ccggaggccg ccccgctccc cggtgatctg gccggcgccg ccgaacgcgc gggcatctcg
     1201 ccccggctcg ccgggttgct ggcccggcgt ggcgttcgca ccgcggacga cctggccgcc
     1261 tggttcggcg agccgctcga cggtctccac gacccggccc tgctgcccga cgccggtcgg
     1321 ctgctggatc gcgtccggcg ggcgcgcgac gccggggaaa cggtccaggt cttcggcgac
     1381 tttgatgccg acgggctgac cgggctggcc atcctgacca ccgccctgcg tcgattcggt
     1441 gtcgacgcga tcccgtacgt gccgagccgg ctggacgagg gccacggcct gtcgctggcg
     1501 gcgctcgacg cggccgaggc tcgcggcgtc tccctcatcg tgacggtgga ctgcggctcg
     1561 accagccatg ccgagatcgc cgccgcgaat cgacgcgggc tcgacgtgat cgtgaccgat
     1621 caccaccgcg tccctgaggt gatgccgccg gcatacgcgc tggtcaaccc gcaccgggcg
     1681 gacgcaacgt atccggaccg gcggctggcg gggagcgggg tcgccttcaa gatcgcccag
     1741 ttgctgctcg cggacctgcc cgacggagca cgggcggcgc tcgacctcgc cgacctggcc
     1801 acgatcggga cggtcgccga cgtctcgccg atcgtggggg agaaccgggc gatcgcacgg
     1861 atcggcctcg atcggatcag gcgggatccc cgacccggga tcgccgccct tctcgagcgg
     1921 gcccggatcg atccggccgc cgtcgacctg gagacggtcg ccttcgcgct cgcgccgcgg
     1981 ctgaacgcag ccggccggat gggggaggcg atggaagccg ccaggctcct cctggccgag
     2041 gatccggccg aggcgaccca ccatgccgat gcgctcgagg cggcgaacct cgcccggcgc
     2101 gacctcacca ggacggtggt ggctgaagcc agggcgatgg ccgccacggc gcccggcgcg
     2161 cccgcgaccg tcgtccacgg gccctggagc gtcgggatcg tgggcctcgt ggccgcgagg
     2221 ctggtcgagg acgagggacg gcccgcggtc gtcggggcgg agctcgggga cgtgatccgg
     2281 gcttcgtgcc ggagcgacgg ctcgctcgac ctcggggccg cgctcgagca gtgcggcgat
     2341 ctcttcctcc gccacggcgg ccacgccggc gctgccgggt tcgagcttcc ggccgaccgc
     2401 tgggacgcgt tccgtgaacg ctttctggac ctggcggccg cggccgcccc gcctgatccg
     2461 cgtgtcgcca tcgccatcga cctggcgctc cccgcgaggg acgtcgacta cggcctgtac
     2521 cgggagctgg cccggctggc gccatgcgga cccggcaacg ccgacgcctg cgtcgcggtg
     2581 ctcggcatga ccgtgacgag ggtgcgcgcc gccaacggcg gccacagcca gctcacgctg
     2641 cggcgggacc tggacgtgct ggacgggatc gccttcgggc gccccgacat cgccgaggtc
     2701 gtccacgagg gcgaccggct cgacgtggtc gcgcgcctca cgagccggac gttcggcggg
     2761 ttcgagtcgc tccagctcga catccgtgac gtcgcgactg ccggcagcca ccccgagacg
     2821 gcggcgatcc tcggtgccgg ggcgtccctc gccgcggtcg gcgggatccc atgatcgccg
     2881 acgctcgatg atcccggagg accggtgacc cgcgcgagca cccggcgacc gcgtgtccgg
     2941 gatccgtacg ggctggtgcc cgacgcctcg tggctggcgc ccggcctgtc cgccctcggt
     3001 ctcgtggtcg tggcggtgct gacgctcaac ctgctcggcg ggtccatccc gttcgtcacc
     3061 g
//
LOCUS       DATDDI010000450         2410 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_155582, whole genome shotgun sequence.
ACCESSION   DATDDI010000450 DATDDI010000000
VERSION     DATDDI010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155582"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1974
                     /locus_tag="VIU37_06445"
     CDS             <1..1974
                     /locus_tag="VIU37_06445"
                     /inference="COORDINATES: protein motif:HMM:NF009381.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEY6013624.1"
                     /translation="IPRLGRVDDGTAHLDFEPEEQRRKESLSLAVGTFESDGTRISLL
                     DTPGYPDFVADVIEGFAAVDGAVFVMDASGGVEAGLEHAVALGRASGKSACFFINKSD
                     RENADPTAALDALRASFGDKIAPVQLAIGAADTFTGYVDLVHRKAWKLDGGKEVEIPI
                     PADMEAEVARRRDQLLEAAAEADDDVLTKYLEGEEISDPELDACLRKGVKDSILAPVL
                     VGSATKGIGLRGLLDAFVRYLPSPADEPPTQALDKSGGTVEVPADETGAVLVRVFKTT
                     ADPFVGRLTYLRVLAGTLHSQAHVWNSTRGEDERIGQLLLLHGKEQEPIGELKAGEIG
                     AVAKLTVTETGDTLSVQAKPLTLPPLEFPEPSLVMAIEPQTKGDLDKMGPALTRMLEE
                     EPTVRLERSTTGEQTLRTMGEAHTSVIIERLKRKFGAAIVTHTPRVPYKETIRGKTQV
                     HGRYKKQTGGHGMFGDVWLELEPNPDGGVEFAERIVGGAVPKGFFAGVEKGIREAAEG
                     GVLAGYPLSDFKATLYDGSFHPVDSNEMAFKIAASMALKDGVQNAKPALLEPIMEVEI
                     RVPEAYMGEVNRDLNGRRGRVLGMDTIGDMQVISALVPQAELFNYATELRSLAQGRGT
                     FSATLHHYEDVPGHIAEKVIESHRKEVEAAGGH"
     gene            complement(1992..>2410)
                     /locus_tag="VIU37_06450"
     CDS             complement(1992..>2410)
                     /locus_tag="VIU37_06450"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEY6013625.1"
                     /translation="VVLGTVALADPGLVGTLVSTHGPDRIAVAIDVRDGLAVGHGWTS
                     GAAGTPAPEAIGALADVGVTTFEVTAIDRDGLLGGPDLGLYERLVADGRGDIVASGGI
                     TTLDDLRALRTAGCAGAILGRALYEGQLDLEAALRL"
BASE COUNT          395 a          876 c          837 g          302 t
ORIGIN      
        1 attccccggc tcggtcgtgt tgacgacggg accgcgcacc tcgacttcga accggaggag
       61 cagcgccgca aggagtcgct gagcctcgcc gtcggcacgt tcgagtcgga cgggacgcgg
      121 atctcgctgc tcgacacgcc cggctacccc gacttcgtgg ccgacgtcat cgagggcttc
      181 gccgccgtcg acggcgccgt cttcgtgatg gacgcctcgg gcggcgtcga ggccggtctc
      241 gagcacgccg tggcgctcgg gcgggcgagc ggcaagtcgg cctgcttctt catcaacaag
      301 agcgatcgcg agaacgccga cccgacggcc gcgctcgatg cgctccgggc gagcttcggc
      361 gacaagatcg cgccggtcca gctcgccatc ggggccgccg acacgttcac cggctacgtc
      421 gacctcgtcc accgcaaggc ctggaagctc gacggaggca aggaggtcga gatccccatc
      481 ccggccgaca tggaggcgga ggtcgcccgg cggcgcgacc agctcctcga ggcggcggcc
      541 gaggccgacg acgacgtcct gaccaagtac ctcgagggcg aagagatctc cgatccggag
      601 ctcgacgcct gcctgcgcaa gggcgtcaag gattcgatcc tcgccccggt gctcgtcggc
      661 agcgcgacca aggggatcgg actgcgcggg ctgctcgatg cattcgtccg ctacctcccc
      721 tccccggccg acgagccgcc cacccaggcg ctcgacaagt ccggcgggac cgtcgaagtc
      781 ccggccgacg agactggcgc ggtcctggtc cgcgtgttca agaccacggc cgacccgttc
      841 gtcggccggc tcacctacct gcgcgtcctg gccgggacgc tccactcgca ggcgcacgtc
      901 tggaacagca cccgcggcga ggacgagcgg atcgggcagc tgctgctgct ccacggcaag
      961 gagcaggagc cgatcggcga gctcaaggcc ggcgagatcg gcgcggtcgc caagctgacc
     1021 gtgaccgaga ccggcgacac gctcagcgtc caggccaagc cgctgacgct gcccccgctc
     1081 gagttccccg agccgtccct cgtgatggcg atcgagcccc agaccaaggg cgacctcgac
     1141 aagatgggcc cggcgctcac ccggatgctc gaggaggagc cgaccgtcag gctcgagcgc
     1201 agcacgaccg gcgagcagac gctccggacg atgggcgagg cccacacctc ggtcatcatc
     1261 gagcggctca agcgcaagtt cggcgcggcg atcgtgaccc acacgccgcg cgtgccgtac
     1321 aaggagacga tccgcggcaa gacccaggtc cacggccggt acaagaagca gaccggcggg
     1381 cacgggatgt tcggcgacgt ctggctcgag ctcgaaccca acccggacgg cggtgtcgaa
     1441 ttcgccgaac ggatcgtcgg cggcgccgtc ccgaaggggt tcttcgccgg cgtcgagaag
     1501 gggatccgcg aggccgccga gggcggcgtg ctcgccggct acccgctgtc cgacttcaag
     1561 gccacgctct acgacggctc gttccacccg gtcgactcga acgagatggc cttcaagatc
     1621 gccgcgtcga tggcgctcaa ggacggtgtc cagaacgcca aacctgcact cctcgaaccg
     1681 atcatggagg tcgagatccg ggtccccgag gcgtacatgg gcgaggtcaa ccgcgacctc
     1741 aacggccggc gcggccgggt cctggggatg gacacgatcg gcgacatgca ggtgatcagc
     1801 gcgctggtcc cccaggccga gctgttcaac tacgcgaccg agctgcgttc actcgcccag
     1861 ggccgcggca cgttcagcgc gacgctccac cactacgagg acgtcccggg ccacatcgcc
     1921 gagaaggtga tcgagtcgca ccgcaaggag gtcgaggccg ccggcgggca ctgagccccg
     1981 acgaacccgc gctataggcg gagcgccgcc tcgaggtcga gttggccttc gtacagggcc
     2041 cggcccagga tcgcgccggc acagcccgcc gttcggagcg ctcgcaggtc gtccagggtg
     2101 gtgatcccgc ccgaggcgac gatgtcgccg cgcccgtccg cgaccagccg ctcgtacagg
     2161 ccgagatccg ggccgccgag caggccgtca cggtcgatcg cggtgacctc gaaggtcgtg
     2221 accccgacgt ccgcgagggc gccgatcgcc tcgggcgcgg gcgtgcccgc ggcgccgctc
     2281 gtccagccgt gaccgaccgc gaggccgtcg cgcacgtcga tcgcgaccgc gatccggtcc
     2341 gggccgtgcg tcgagacaag ggtgcccacc agcccgggat cggccagcgc gaccgtcccg
     2401 aggacgaccc
//
LOCUS       DATDDI010000451         1645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_155602, whole genome shotgun sequence.
ACCESSION   DATDDI010000451 DATDDI010000000
VERSION     DATDDI010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155602"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VIU37_06455"
     CDS             complement(<1..262)
                     /locus_tag="VIU37_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013626.1"
                     /translation="MGRNATRPILVVNPADDDVFGSFARVLVNHGASTTDELERRLRP
                     LYAKAVVHARELSSEPLVIWYVYRDGQWVKSRGGADPSGRTRM"
     gene            complement(406..>1645)
                     /locus_tag="VIU37_06460"
     CDS             complement(406..>1645)
                     /locus_tag="VIU37_06460"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY6013627.1"
                     /translation="ERLDGPVAAFTVGRLPRVLFGAGRRAELPSLVAAHGRRALLVTG
                     ARSLLATPWWTELTAGLDEAGVTWDRLGVHGEPSPELVDGAVAARRADPPDVVVGIGG
                     GAALDAGKAIAGLLRSGTVALDHLEGIGRGIPYPGPSTPFIAVPTTAGTGSEVTRNAV
                     LSGQTAAGGGPPAPFKKSFRDDRLVAATAIVDPDLVAGCPPALIAGDGMDALTQCLEA
                     YVSTGASPYTDAIARSGLAAIGPALPAWHAAALDGRPPAEAAAFRSAMAWGALASGIA
                     LANAGLGAVHGMIAALGVRHGIHHGTGCGILLAAATRVNLEALRARDPDGPALRRYAE
                     AGRLLVEDPSLRGDDAADALVHWLVTLTTQLGLPRLADVGVREADLAALVADSRGSSM
                     RTNPIVLADSEIATILTDSL"
BASE COUNT          224 a          602 c          623 g          196 t
ORIGIN      
        1 ccatgcgcgt gcggccggac gggtcggcgc cgcctcggga cttgacccac tggccgtcgc
       61 gatagacgta ccagatgacg aggggctcgc tgctgagctc ccgcgcgtgg accaccgcct
      121 tggcatagag cgggcgaagt cgacgctcga gttcgtcggt ggtggacgcg ccgtggttga
      181 ccagcacgcg agcgaaagaa ccgaagacgt catcatctgc ggggttcacc acgagaatcg
      241 gacgcgtcgc gttcctgccc atgatcggtg agtgtccggg ccggtcaatg cccgcgacgg
      301 cggcggaacg gtccggggga tcgcaacggc gttacaaacg ccagtgccgg ggttgccgcg
      361 cgttcggccg agtccggtcg cgggccgccc gagcgagggc cttcctcaga gcgaatcggt
      421 caggatcgtc gcgatctccg agtcggcgag gacgatcgga ttggtccgca tgctcgagcc
      481 gcgcgagtcg gcgaccagcg ctgcgagatc cgcctcgcgg acgccgacgt cggcgagtcg
      541 cggcaggccg agttgcgtgg tcagcgtgac gagccagtgg accagcgcgt cggccgcgtc
      601 gtccccgcga agcgacgggt cctcgacgag aagccgcccg gcctcggcat accgccgcaa
      661 tgccgggcca tccggatccc gcgcccgcag cgcctcgaga ttcacccggg tcgccgccgc
      721 gaggaggatc ccgcagccgg tcccgtggtg gatcccgtgg cggacgccga gcgccgcgat
      781 catgccgtgg acggccccga gcccggcgtt ggccagggcg atccccgacg cgagcgcgcc
      841 ccacgccatg gcggatcgga aggcggcggc ctcggcgggc ggccggccgt ccagcgccgc
      901 ggcgtgccac gcgggcagcg cgggtccgat cgccgccagg ccgctccggg cgatggcgtc
      961 cgtgtacggc gaggcgccgg tggacacgta ggcctccagg cactgggtga gcgcatccat
     1021 cccatcgccc gcgatgagcg ccggcggaca tccggcgacc aggtccgggt ccacgatcgc
     1081 cgtggcggcc accagccggt cgtcccggaa cgacttcttg aatggcgccg gcgggccgcc
     1141 gcctgcagcg gtctgccccg agaggaccgc gttcctcgtc acctccgagc ccgtcccggc
     1201 ggtcgtcggg accgcgatga acggcgtcga gggtccgggg taggggatcc cgcgcccgat
     1261 gccctcgagg tggtcgaggg cgaccgttcc ggatcggagg aggccggcga tcgcctttcc
     1321 ggcatccagc gcggcgccgc cgccgatccc gacgacgaca tcgggcgggt ccgcgcggcg
     1381 ggccgcgacg gcgccgtcca cgagctccgg cgacggctcc ccgtgcacgc cgagccgatc
     1441 ccacgtgacc ccggcctcgt cgagcccggc cgtcagctcg gtccaccacg gcgtggccag
     1501 gagcgaccgg gcgccggtca cgagcagcgc gcggcgccca tgggcggcga cgagcgaggg
     1561 gagctcggcc cgccgtccgg cgccgaacag gacccgcggc agccgtccga ccgtgaacgc
     1621 ggccacgggc ccgtcgaggc gctcg
//
LOCUS       DATDDI010000452         1615 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_342778, whole genome shotgun sequence.
ACCESSION   DATDDI010000452 DATDDI010000000
VERSION     DATDDI010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342778"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..883)
                     /gene="mnmA"
                     /locus_tag="VIU37_06465"
     CDS             complement(<1..883)
                     /gene="mnmA"
                     /locus_tag="VIU37_06465"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: protein motif:HMM:NF001138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEY6013628.1"
                     /translation="MSRILVAMSGGVDSSVAAALLHRQGHEVVGVWMRLHDVADTYSE
                     FKKSCCSLDAADDARRVAAQLEVPFYVMNLEREFDAGVIQPFLDAYLDGRTPSPCVDC
                     NTYVKFGALLGRARHLYDCDAVATGHYARREVGPDGRARLLKALDPDKDQTYFLYGLR
                     QDQLEHARFPLGELTKPEVRDIARSLGLVTADKPESQEICFVPGGDYRDALRDRAGWT
                     PAGGPMVDRDGSTVGVHGGVAAYTIGQRQGLGVSLGEPRYVSRIDPLTNTITLGRRQD
                     LETTTIELERTTFVAGRA"
     gene            complement(880..>1615)
                     /locus_tag="VIU37_06470"
     CDS             complement(880..>1615)
                     /locus_tag="VIU37_06470"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY6013629.1"
                     /translation="EVGTIQPIAEIAAVVRTHKDVLLHVDAVQAAPYVDIDVGQLGAD
                     LVSLGAHKFEGPKGVGVLYVRHGTHILAQQQGGTQERHRRAGTESVAGAVGLATAYEL
                     SCAERPETVARLRRQRDRLAKAVLATPGTEPTGHPKQRLPGLFSMVARDTDGASVAMS
                     LDLEGIACSVGSACATGSTEVSHVLTAMGYPEDEARGALRLSLGRTTTDDEVAQACAI
                     VPRVVASMRVGGLAVAADPLGQGLPA"
BASE COUNT          219 a          584 c          588 g          224 t
ORIGIN      
        1 gtgcgcggcc ggcgacgaac gtcgtccgct cgagctcgat cgtggtggtc tcgagatcct
       61 ggcgccgccc gagggtgatc gtgttcgtca gcggatcgat ccggctgacg tagcgaggct
      121 cgcccaggct gacaccgagg ccctgccgct gtccgatggt gtacgccgcc acgccgccgt
      181 gaacgccgac cgtcgagccg tcgcgatcga ccatcggtcc gcccgccggc gtccagccgg
      241 cgcgatcgcg cagggcgtcc cggtagtcgc cgccgggcac gaagcagatc tcctggctct
      301 cgggcttgtc ggccgtgacg agcccgagcg agcgggcgat gtcgcgcacc tcgggcttgg
      361 tcagctcgcc gagcgggaac cgcgcgtgct ccagctggtc ctggcggagg ccgtacagga
      421 agtaggtctg atccttgtcg gggtcgagcg ccttgagcag gcgtgcccgg ccatccggcc
      481 cgacctcgcg ccgggcgtag tggcccgtcg ccaccgcgtc gcagtcgtac aggtgccggg
      541 cccggccgag cagcgccccg aacttgacgt acgtgttgca gtcgacgcac ggcgacggcg
      601 tccgcccgtc caggtaggcg tccaggaacg gctggatcac gccggcatcg aactcgcgct
      661 cgaggttcat gacgtagaac gggacctcga gctgggcggc cacccggcgc gcgtcgtcgg
      721 cggcgtcgag cgagcagcag ctcttcttga actcggagta cgtgtcggca acatcgtgca
      781 ggcgcatcca gacgccgacg acctcgtgac cctgccgatg gagcagcgcc gcggcgaccg
      841 acgagtccac cccgccggac atcgcgacca ggatccggct cacgcgggca gaccctgccc
      901 gagcgggtcg gcggccaccg cgagaccgcc cacgcgcatc gaggccacga cgcgcgggac
      961 gatcgcgcag gcctgggcga cctcgtcgtc cgtcgtggtc cggccgagcg acagccggag
     1021 cgcgccgcgt gcctcgtcct cggggtagcc catcgccgtc agcacgtggc tcacctcggt
     1081 cgagcccgtc gcgcaggccg acccgacgga gcaggcgatg ccctcgaggt cgagcgacat
     1141 ggcgacggaa gcgccgtcgg tgtcccgggc caccatcgag aacagccccg gcaggcgctg
     1201 cttcggatgg cccgtcggct cggtgcccgg cgtcgcgagg acggcctttg ccagccgatc
     1261 gcgctggcgt cggaggcggg cgacggtctc cgggcgttcg gcgcaggaca gctcgtaggc
     1321 ggtcgcgagc ccgacggcac cggccacgct ctcggtcccc gcccggcggt ggcgctcctg
     1381 cgtcccgccc tgctgctggg cgaggatgtg cgtcccgtga cggacgtaga ggacgccgac
     1441 gcccttgggt ccctcgaact tgtgcgcacc gagcgagacc aggtccgcgc ccagctgccc
     1501 gacatctatg tcgacgtacg gggcggcctg gaccgcatcc acgtggagca ggacgtcctt
     1561 gtgcgtgcgg acgaccgcgg cgatctcggc gatcggctgg atcgtgccga cctcg
//
LOCUS       DATDDI010000453         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_259738, whole genome shotgun sequence.
ACCESSION   DATDDI010000453 DATDDI010000000
VERSION     DATDDI010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259738"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VIU37_06475"
     CDS             <1..317
                     /locus_tag="VIU37_06475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013630.1"
                     /translation="APDTGPTARAKLNQPEANSAFVRKPPRYVLTGEATFYDNGTTAM
                     RLPRGTTVVICGNGGCVERVVTDWGPQKPSRIVDLYRPDFFAICGCAWWSGTTRVTVS
                     VY"
     gene            411..974
                     /gene="pyrR"
                     /locus_tag="VIU37_06480"
     CDS             411..974
                     /gene="pyrR"
                     /locus_tag="VIU37_06480"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003547.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEY6013631.1"
                     /translation="MSGRQIMTADEIRRATIRLSHEIVEKQAGTDGLVLIGIQRRGVP
                     LARRIAASIAEHEGVALPVGALDITFYRDDLSMVAQQPVVKGTELPTGIDGKTIVLVD
                     DVLYTGRTIRAAMDALVDFGRPQAIRLAVLVDRGHRELPIRADHVGKNVPTSREELVR
                     VHLEEVDGLDEVEIERMVAAPQPEPVA"
     gene            971..1996
                     /locus_tag="VIU37_06485"
     CDS             971..1996
                     /locus_tag="VIU37_06485"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEY6013632.1"
                     /translation="MSAVVGPDAVAVPSVDDVPESQPIAWRHRHLLDVDRLSTAELDL
                     IMRTTDAMREVLARPIAKVPALRGRAVTILFYEASTRTRVSFEVAAKNLSADVVNIAA
                     STSSVVKGESLIDTVRTVEALGAQMLVMRHSSSGAPYLAADIFSGSVLNGGDGWHAHP
                     TQALLDLYTMRERMPGGSLAGRKVVILGDLLHSRVARSNIWTLTAAGADLWLCGPPTL
                     VRGFEAWANRGAAGRRFHLTTSVDEALRDADVVMALRIQRERMAGGLLPSMREYAARY
                     GLTRARLALARPEALVMHPGPMNEGVEIAADVAAGPQSVITDQVTNGVAVRMAVLYLL
                     AGTRAPA"
BASE COUNT          297 a          752 c          759 g          302 t
ORIGIN      
        1 cagcacccga caccggaccg accgcgcgcg cgaagctcaa tcagcccgag gcgaattcgg
       61 cgttcgttcg gaagccgccg cgctacgtgc tgaccggcga ggcgaccttc tacgacaacg
      121 gcacgacggc gatgcgcctg ccgcgcggca ccaccgtggt catctgcggg aacggtggct
      181 gcgtcgagcg tgtcgtgacg gactggggac cgcagaagcc gtcacggatc gtcgacctct
      241 accgaccgga tttcttcgcg atttgcggct gcgcctggtg gtccggcacg acccgggtga
      301 ctgtctcggt ctactgatcg cgcccgaccc ggcgcggtat ccttggcgcg acccttcagc
      361 cacggccccg tgaggccgcc cggaaggccc cgcgaggccg ggaaggagcg atgagcggcc
      421 gtcagatcat gaccgcggac gagatccgcc gggccacgat ccgcctgtcc cacgagatcg
      481 tcgagaagca ggccggcacg gacggcctgg tgctgatcgg gatccagcgc cgcggtgtcc
      541 cgctggcccg ccggatcgcc gcctcgatcg ccgagcacga aggcgtggcg ttgcccgtgg
      601 gcgcgctcga catcaccttc taccgcgacg atctctcgat ggtcgcccag cagccggtgg
      661 tcaagggcac ggagctgccg accggcatcg acggcaagac catcgtcctg gtggacgacg
      721 tcctgtacac cggccgcacg atccgtgccg cgatggacgc cctggtcgac ttcgggcgcc
      781 cgcaggcgat ccggctcgca gtgctcgtcg atcgcggcca tcgcgagctg cccatccgtg
      841 ccgaccacgt gggcaagaac gtcccgacct cgagggagga gctcgtccgg gtgcatctcg
      901 aagaggtcga tgggctggac gaggtcgaga tcgagcgcat ggtggccgcg ccccagccgg
      961 agccagtcgc gtgagcgccg tcgtcggtcc ggacgcggta gccgtcccgt ccgtcgacga
     1021 cgtccccgag agccagccga tcgcctggcg gcaccgccac ctcctcgacg tcgaccggct
     1081 gtcgaccgcc gagctcgacc tgatcatgcg cacgacggat gcgatgcgcg aggtgctggc
     1141 gcggccgatc gccaaggtgc cggccctgcg cggccgcgcg gtgacgatcc tgttctacga
     1201 ggcctccacg cggacccgcg tctcgttcga ggtggccgcc aagaacctgt cggccgacgt
     1261 cgtgaacatc gccgcgtcca cctcgtccgt ggtcaagggc gaatcgctga tcgacacggt
     1321 ccggacggtc gaggcgctcg gcgcgcagat gctcgtgatg cggcactcct cgtcgggggc
     1381 gccgtacctg gccgccgaca tcttcagcgg ctcggtcctc aacggcggcg acggctggca
     1441 cgcccacccg acccaggcac tcctcgacct ctacaccatg cgcgaacgga tgcccggggg
     1501 gtcgctggca ggccggaagg tggtgatcct gggcgacctg ctccattcgc gcgtcgcccg
     1561 ctcgaacatc tggacgctca cggccgctgg cgccgacctg tggctgtgcg gacccccgac
     1621 gttggtccgg ggcttcgagg cgtgggcgaa ccggggcgcc gccggccggc gcttccacct
     1681 cacgacctca gtcgacgagg cgttgcgcga cgccgacgtg gtgatggcgc tgcggatcca
     1741 gcgcgagcgg atggccggtg gcctgctgcc gtcgatgcgc gagtacgcgg cccggtacgg
     1801 gttgacccgt gcgcgcctgg cgctcgcacg gccggaggca ctggtgatgc acccggggcc
     1861 catgaacgag ggcgtggaga tcgccgcgga cgtggccgcc ggcccccagt cggtgatcac
     1921 cgaccaggtc accaacggcg tggccgttcg gatggccgtg ctgtacctgc tggccgggac
     1981 ccgggcgccg gcgtgagcac gcggccgctc gacctcgaga tcagtcgggc ctggctggtc
     2041 gacccggcga tcgggcgcga gggcccgggc gagatcgtcg tccgggcggg cgtgctcgag
     2101 gccgtgacct
//
LOCUS       DATDDI010000454         1573 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_51547, whole genome shotgun sequence.
ACCESSION   DATDDI010000454 DATDDI010000000
VERSION     DATDDI010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51547"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VIU37_06490"
     CDS             <1..223
                     /locus_tag="VIU37_06490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013633.1"
                     /translation="WVSTPTTSAHVTGDAADVGPADATTWLSGHGARYGLCQVYRNEA
                     WHYELRPEATSRGCPPMYADPTHDPRTQH"
     gene            257..616
                     /locus_tag="VIU37_06495"
     CDS             257..616
                     /locus_tag="VIU37_06495"
                     /inference="COORDINATES: protein motif:HMM:NF021483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2200 domain-containing protein"
                     /protein_id="HEY6013634.1"
                     /translation="MSGSVGHRIFSTTLASVYPLYLAKVEKKGRTRDELDAAIRWLTG
                     YDQSELDRHLAAGTTFSDFFAGARLHPNTALITGVVCGVRVESIEDPLMQRIRYLDKL
                     VDELAKGRALEKVLRIR"
     gene            complement(772..1260)
                     /locus_tag="VIU37_06500"
     CDS             complement(772..1260)
                     /locus_tag="VIU37_06500"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HEY6013635.1"
                     /translation="MTRTAQRGDRLSRAEKASLLVERSLDRWLSPLGVWVFRRTKGAI
                     ARPWKVEALVLTTRGRRSGIERSVVLRYFPDGEVMILAAANDGGATHPGWYYNLKADP
                     TARVEVEGRTIHVRAEELPPEDAADWWRQIVRIQPNYERFARATARRIPIIRLTPAPI
                     AT"
BASE COUNT          235 a          550 c          554 g          234 t
ORIGIN      
        1 ctgggtctcc accccgacca cctcagcgca cgtgaccggg gatgcggcgg acgtcggacc
       61 cgccgacgcc acgacctggc tttccgggca tggcgcccgc tacgggctgt gccaggtcta
      121 ccgcaacgag gcctggcact acgaactgcg ccccgaggcc accagccgtg gctgtcctcc
      181 catgtatgcc gaccccacgc acgatccgag aacgcagcac tgacggccca cgacgtgctg
      241 gtaggctctc cccgggatga gtggttcggt tgggcatcgg atcttcagca cgaccctggc
      301 ctcggtgtac ccgctgtacc tggcgaaggt cgagaagaag ggccggaccc gggacgagct
      361 cgatgcggcg atccgctggc tgacggggta cgaccagtcc gaattggacc ggcacctcgc
      421 cgccggcacg accttctcag acttcttcgc cggggcgcgc ctgcacccga acacggcgtt
      481 gatcaccggc gtcgtctgcg gggtgcgcgt cgagtcgatc gaggatccgc tcatgcagcg
      541 gatccggtac ctcgacaagc tcgtggacga gctcgcgaaa ggccgggcgc tggagaaagt
      601 gctgcgcatc cgctgagccg cccggtcgcc acggcggcag gtagggaatt cgacacctca
      661 tgtctcggcc gcgctggtcc gctggccggc gcggcgccga gggcggcccg aagccggcgt
      721 tacagcgacc gtgagggcgg acctgcgggc gattcgcgct gaccgtggcg atcaggtggc
      781 gatcggggcg ggggtcaggc ggatgatcgg gatccttcga gcggtcgccc gggcgaagcg
      841 ttcgtagttc ggctggatcc gcacgatctg ccgccaccag tcggcagcat cctcgggcgg
      901 cagctcctcg gcccgaacgt ggatggtccg gccctcgacc tcgacacgcg ccgtcggatc
      961 agccttcagg ttgtagtacc agccgggatg ggtggcgcca ccgtcgttgg cggctgcgag
     1021 gatcatcacc tccccgtcgg ggaagtaccg gaggacgacg gaccgctcga tcccggatcg
     1081 tcggcccctg gtcgtgagca ccagcgcctc gaccttccag ggcctggcga tggcgccctt
     1141 ggtgcggcgg aagacccaca cgccgagcgg cgacaaccac ctgtccaggc tgcgctcgac
     1201 gagcaggctc gctttctccg ctcgcgacag ccgatcaccc cgctgtgcgg tcctggtcat
     1261 ggaccgagtg tcggcgttcc ccacgcgcga gccaagggcc ggacggccct cggcctggcg
     1321 gattgcgcag cccgtctagc cactcgacga gcgcctgggc gacggctccc ggatcgacca
     1381 gcgggtggaa ctggccggcc ggtaactcgc gaacggccca gccggcgcgc ccggcacgct
     1441 cttcggccgg cgtctggcgg accttgagtg cctggcctca catgggatgg catgggcggg
     1501 cgcaagaccg cgggctcgag atcgccgcga tgcgctccgg cggaatcgag aaccggacgc
     1561 ctcatgtcgt cgt
//
LOCUS       DATDDI010000455         2278 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_342861, whole genome shotgun sequence.
ACCESSION   DATDDI010000455 DATDDI010000000
VERSION     DATDDI010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342861"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VIU37_06505"
     CDS             complement(<1..556)
                     /locus_tag="VIU37_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013636.1"
                     /translation="MRPIRWLSVLVPVVAVAIIELISDGLLDAELPFPMDTIVVTVVV
                     ALLAWGFTTLAFRRIEHLQSILRARNLDLERRAASARALHRVSVAIAALAEVDEILRA
                     VVDQARSLLEADVAVLVTNGPDGEPRLAAVSGPDGGIDRAGGFAAPGPDGGVARFVSP
                     ELMTARLEAPLQRAGETIGMLLVGS"
     gene            712..1878
                     /locus_tag="VIU37_06510"
     CDS             712..1878
                     /locus_tag="VIU37_06510"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF006942.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HEY6013637.1"
                     /translation="MKIGVAKETAPGERRVALVPEVLAKLEAAGLDILVEQGAGAGAA
                     IPDQAYADAGATIVSSVELYAQAEAILRVAKPSESEVRVMRAGQAVIGFLSPLIDPAT
                     AQALAAQGVTAISLDAIPRTLSRAQTMDALSSQANVGGYKAVLIAANAFGRYFPLLTT
                     AAGTAKPANVLILGIGVAGLQAIGTARRLGAVVKAYDVRPETREQAESLGAQFVKLKT
                     TIDATGAGGYARELTAEERAAQQAELNEVIGGMDVVITTAQVPGRKPPVLVTADAVGR
                     MKSGSVIVDMAASALGGNCELSQAGETVTSPNGVSIIAPENLPASMPAGSSAFYARNI
                     SALLLGMVKDGNLHLDFDDEVTKATVITHGGAVVSDPVKKLLEPAPAAGTGGPA"
     gene            1875..2192
                     /locus_tag="VIU37_06515"
     CDS             1875..2192
                     /locus_tag="VIU37_06515"
                     /inference="COORDINATES: protein motif:HMM:NF024179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEY6013638.1"
                     /translation="MSPELLSALTVFVLAILVGFAVISKVPATLHTPLMSGANSIHGI
                     VLVGSMFIAIEATDLPSQLLSLVAVAFATMNVVGGYVVTDRMLQMFKKKPVAPKPAEQ
                     AEG"
BASE COUNT          354 a          826 c          787 g          311 t
ORIGIN      
        1 gggagccgac cagcagcatg ccgatcgtct cgccggcacg ctggagcggg gcctccaggc
       61 gggcggtcat cagctcgggg ctcacgaacc tggccacgcc accgtccggt cccggagccg
      121 cgaacccgcc ggcccggtcg atgccgccgt cgggcccact caccgcggcg aggcgcggct
      181 cgccgtccgg accgttcgtg accaggaccg ccacgtccgc ctccagcagc gagcgggcct
      241 ggtccacgac ggcccgcagg atctcgtcga cctcggccag cgcggcgatc gcgacgctca
      301 cccgatggag cgcgcgggcc gaggcggcgc gccgctcgag gtcgaggttg cgggcacgca
      361 ggatggattg gaggtgctcg atccggcgga aggcgagcgt cgtgaagccc cacgcgagca
      421 gcgccaccac caccgtgacc acgatggtgt ccatcgggaa gggaagctcg gcatcgagca
      481 gcccgtcgct gatcagctcg atgatcgcca ccgcgacgac cggcaccagg acgctgagcc
      541 agcggatcgg tcgcatgtgc cgaagcatag tcacggccgg catgagcgca ccgaatcgca
      601 acgtcccggg cggcgcggcc gcaatcgcga gcaggtattc ttcgcgcgcc ccaatgtgcc
      661 cccggggaca gtccccgtcc acggtcccga agccctagtc aggtggattc catgaagatc
      721 ggtgtcgcca aggagaccgc gcccggcgaa cggcgtgtcg ccctggtgcc ggaggtcctc
      781 gccaagctcg aggccgccgg gctcgacatc ctcgtcgaac agggcgccgg cgcgggcgcc
      841 gccatccccg accaggcgta cgccgacgcc ggagcgacga tcgtcagcag cgtcgagctg
      901 tacgcccagg cggaggccat cctccgcgtc gccaagccga gcgagtccga ggtccgtgtc
      961 atgcgtgcgg gccaggcggt catcggcttc ctgtcgccgc tcatcgatcc cgccacggcg
     1021 caggcactgg cggcacaggg cgtgaccgcc atcagcctgg acgcgatccc gcgcacgctg
     1081 tcgcgggccc agacgatgga cgcgctcagc tcgcaggcca acgtcggcgg ctacaaggcg
     1141 gtcctcattg ccgcgaacgc cttcggccgc tacttcccgc tgctgacgac ggccgccggg
     1201 accgccaagc cggccaacgt gctgatcctg ggcatcggcg tcgccggact ccaggcgatc
     1261 ggcacggcgc gacggctggg cgccgtggtc aaggcctacg acgtccggcc ggagacccgc
     1321 gagcaggccg agtcgcttgg cgcccagttc gtcaagctca agacgaccat cgacgcgacc
     1381 ggcgccggcg gctatgcccg cgagctgacc gccgaggaac gcgccgccca gcaggccgag
     1441 ctcaacgagg tcatcggtgg catggacgtg gtgatcacca cggcccaggt ccccggccgc
     1501 aagcccccgg tcctggtcac ggcggacgcg gtcggccgca tgaagtcggg gtccgtcatc
     1561 gtcgacatgg ccgcgtccgc gctcggcggc aactgcgagc tgagccaggc cggcgagacg
     1621 gtgacgtcgc cgaacggcgt ctcgatcatc gcgccggaga acctgccggc ctcgatgccg
     1681 gccggctcgt cagccttcta cgcccgcaac atctcggcgc tgctgctcgg gatggtgaag
     1741 gacggcaacc tgcatctcga cttcgacgac gaggtgacca aggccacggt catcacccat
     1801 ggcggtgcgg tggtctcgga ccccgtgaag aagctgctcg aaccggcccc cgcggccgga
     1861 accggaggtc ccgcgtgagc cccgaactgc tgtctgccct gaccgtcttc gtcctggcga
     1921 tcctggtcgg cttcgcggtc atcagcaagg tccccgcgac cctgcacacg ccgctgatgt
     1981 cgggcgcgaa ctcgatccac ggaatcgtgc tggtcggctc gatgttcatc gccatcgagg
     2041 ccaccgacct gcccagccag ctgttgtcgc tggtggccgt cgcgttcgcc acgatgaacg
     2101 tcgtgggcgg ctacgtggtc acggatcgca tgctccagat gttcaagaag aagcccgtcg
     2161 cgcccaagcc ggccgagcag gcggagggct gagcgatgga cttcagcacc atctcggaca
     2221 tcgtgcggct ggcctggctg gccggtgccg cgtgcttcgt catcggcctg atgcggat
//
LOCUS       DATDDI010000456         2181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_342865, whole genome shotgun sequence.
ACCESSION   DATDDI010000456 DATDDI010000000
VERSION     DATDDI010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342865"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..817)
                     /gene="sigJ"
                     /locus_tag="VIU37_06520"
     CDS             complement(<1..817)
                     /gene="sigJ"
                     /locus_tag="VIU37_06520"
                     /inference="COORDINATES: protein motif:HMM:NF007214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigJ"
                     /protein_id="HEY6013639.1"
                     /translation="MNRQDWLAQAFERQRPHLRAVAYRMLGSVSEAEDAVQEAWVRLD
                     RHDPGGTDDLRGWLTVVTGRICLDMLRARRSRREDYAGSWLPEPIVTAAADDSPERDA
                     VLADSVGLALLVVLETLSPAERLAFVLHDVFAVSFDEIAEVAGKTPAAARQLASRARR
                     RVREGTPNPDADLKVQRRVVDAFLAASRAGDFEALVRVLDPDVVFRTDGGGIGPLARP
                     PVVGAAEVAGVILRRGTPFARFARPAIVNGAAGAVIRAPHQPTIVAGFTVVGGR"
     gene            complement(968..1804)
                     /locus_tag="VIU37_06525"
     CDS             complement(968..1804)
                     /locus_tag="VIU37_06525"
                     /inference="COORDINATES: protein motif:HMM:NF015669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEY6013640.1"
                     /translation="MTRRAIPGLALAAAAILAACASGAAPTGAAPSGGTPGASSPTLD
                     GHTYLSTGIDGADLVPGTQVRLAFADGSLNASGGCNLMGGTYTIDGDRLSATQLAMTE
                     MGCDDARQHQDEWLARFLGGVTFELRGDTLILSDGAVRLTLLDKEVATPDQPLEGTSW
                     LLDGIVSGDAVSSVPGGVTAAIQIAAGRIEVNAGCNTGGGTAQVAADSGSSAPSGTIT
                     VSPIGLTKMACQSAAMAVEAAMTTVLDGTVRYAIDADVLTLTAGDHGLTFRATGCSHC
                     RP"
     gene            complement(1878..>2181)
                     /locus_tag="VIU37_06530"
     CDS             complement(1878..>2181)
                     /locus_tag="VIU37_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013641.1"
                     /translation="YIQSVFEDPDGYLRLAKMLDELILQHPDEPWLAFVRDLPPIARP
                     RVGLFTTYQLLTGSMFPKMRAALAGKTPAPVLELKSRDSRLSERDRDALTRFVAGG"
BASE COUNT          300 a          757 c          836 g          288 t
ORIGIN      
        1 tgcgcccgcc gacgaccgtg aagccggcga cgatggtggg ttggtgcggc gcgcggatca
       61 cggcaccggc ggcgccgttg acgatcgcgg gccgggcgaa ccgggcgaac ggcgttcctc
      121 gccgcaggat gaccccggcg acctccgccg ccccgaccac cggaggacga gcaagcggtc
      181 cgatgccgcc gccgtcggtc cggaagacga cgtccgggtc gagcacgcgg acgagggcct
      241 cgaagtcgcc cgcccgtgac gcggcgagga aggcgtcgac gacgcgtcgc tggaccttaa
      301 ggtcggcgtc cgggttcggc gtgccctcgc ggacgcgacg gcgcgcccgg ctcgccagct
      361 ggcgcgcggc ggcgggcgtc ttcccggcga cctcggcgat ctcgtcgaac gacacggcga
      421 agacgtcgtg gagcacgaac gccaggcgct cggcgggact gagcgtctcg aggacgacca
      481 gcagggcgag cccgaccgaa tcggcgagga ccgcgtcgcg ttccggactg tcgtcggcgg
      541 ccgccgtcac gatcggctcg ggcagccagc tgccggcgta gtcctcgcga cgcgatcgac
      601 gcgcgcggag catgtccagg cagatccggc cggtgacgac ggtgagccag ccacgcaggt
      661 cgtcggtgcc cccggggtcg tgccgatcga gacggaccca ggcctcctgg accgcgtcct
      721 cggcctcgct caccgagccg agcatccggt aggcgaccgc gcggaggtgc ggtcgctggc
      781 gctcgaatgc ctgggcgagc cagtcctgtc ggttcaacgg tcgtgcctcg gtgcggctgc
      841 ggtgtcaaca ggagtacgcc gccggggcgc ccgatgtgac aggcaggtcg agatcgacgc
      901 cgattctacg gcgcgctcct ggcgccgacc cctgtgggtg ccgggctcgg cgccggatcc
      961 cgaggtgtca gggccggcag tgggagcagc cggtcgcgcg gaaggtcagg ccgtgatcgc
     1021 cggcggtgag cgtgagcacg tcggcgtcga tggcgtagcg gaccgtcccg tcgagcacgg
     1081 tggtcatggc agcctcgacc gccatcgccg cggactggca ggccatcttg gtcagcccga
     1141 tcggactgac cgtgatcgtc ccggacggcg cggacgaccc gctgtcggcg gccacctgcg
     1201 ctgtcccgcc gcccgtgttg cagcccgcgt tgacctcgat ccggcccgcc gcgatctgga
     1261 tggccgcggt cacgccgccg ggcacgctcg aaacggcgtc gcccgacacg atcccgtcga
     1321 ggagccagct cgtgccttcg agcggctggt cgggcgtggc aacctccttg tcgaggagcg
     1381 tgaggcggac ggcgccgtcg gagaggatga gcgtgtctcc ccggagctcg aaggtgacgc
     1441 cgcccaggaa gcgcgcgagc cactcgtcct ggtgctggcg agcgtcgtcg cagcccatct
     1501 cggtcatggc cagctgggtg gccgagagcc ggtcgccgtc gatcgtgtac gtgccgccca
     1561 tcaggttgca gccgcccgac gcgttgaggc tgccgtcggc gaaggcgagc cggacctggg
     1621 taccgggcac gaggtccgcg ccgtcgatcc cggtcgacag gtaggtgtgg ccgtcgagcg
     1681 tcggggacga ggcgccgggc gtccctccgc tcggggccgc cccggtgggc gccgctccgg
     1741 acgcgcaggc ggccaggatc gccgccgcgg ccagcgccag accggggatg gctcgtcgcg
     1801 tcatggcgcc gggacggcgc gtcacgggcc gcggttccgg cgggcggccg ccgaagtcac
     1861 ggtggccgcc caagtcgtca gccgccggcg acgaaccgcg tcagcgcatc cctgtcccgt
     1921 tccgagaggc ggctgtcccg cgacttcagc tcgaggaccg gcgcgggcgt cttgccggcc
     1981 agcgcagccc gcatcttcgg gaacatgctg ccggtcagga gctgataggt ggtgaacagg
     2041 ccgacccggg gccgcgcgat cgggggcagg tcgcgaacga acgcgagcca cggctcgtcg
     2101 gggtgctgga ggatcagttc atccaacatc ttggccaggc ggagatatcc atccggatct
     2161 tcaaagacgg actggatata a
//
LOCUS       DATDDI010000457         2083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_342931, whole genome shotgun sequence.
ACCESSION   DATDDI010000457 DATDDI010000000
VERSION     DATDDI010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342931"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VIU37_06535"
     CDS             <1..423
                     /locus_tag="VIU37_06535"
                     /inference="COORDINATES: protein motif:HMM:TIGR00374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase-like domain-containing protein"
                     /protein_id="HEY6013642.1"
                     /translation="YDRFEEGVFGAIAIRQLPYLGILTGSIWMSEALRLFFVVQALGF
                     ADVSLGLSGAVFVALIGSLLTAVPLSPAGLGIVEAGVVGVLTVAYRVPLPEATAIALL
                     DRVISVFSIIVLGSIGYVVSSKPRGLDAVGRRPETTAG"
     gene            702..1232
                     /locus_tag="VIU37_06540"
     CDS             702..1232
                     /locus_tag="VIU37_06540"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6013643.1"
                     /translation="MTTQNGRAFNEWLRTQLKAKKMSQRQLAQQSGVDHSTISRLIRG
                     DRMPSLGTATKLARGLRELREDADTTQYLGVVGSANTNPTARVEYSLRADELLSEAQV
                     RQIMEYYLAVRMRRYGRAVQPTDSPHSPERASEPTYIRPRTTDATVAAVSRTATATLN
                     GLRPVSRTATREPGRY"
     gene            complement(1358..>2083)
                     /locus_tag="VIU37_06545"
     CDS             complement(1358..>2083)
                     /locus_tag="VIU37_06545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013644.1"
                     /translation="AAVGPERVAVRWLGLGLAWTALALTVISPSLATVVEGLPNDHYH
                     AFADPMVFVLVGVGVAALWRASGRAVATATSAAGSAAPAATTSATAPVMTPGRLLAVV
                     GVVAMIAWAVPHQPPVVASDGGFPAAQAAAARIQAAIPQGPIAIGSLPTFKTAEAYVY
                     PLRRDGRQVDPVSLGGRPPVGGGPLVVVCDSLFETAIGATCGGPAEAAAVGGRSADLV
                     DRFRAAPRQTISVYGAAPVLAAR"
BASE COUNT          308 a          778 c          722 g          275 t
ORIGIN      
        1 tacgaccggt tcgaggaggg cgtcttcggc gcgatcgcga tccgccagct gccgtatctc
       61 gggatcctga ccggctcgat ctggatgtcc gaagccctcc gcctgttctt cgtcgtccag
      121 gcgctcggct tcgcggacgt ctcgctcggg ctatccggcg cggtcttcgt ggccctgatc
      181 gggtcgctgc tgacagccgt gccgctgagc ccggcgggcc tcggcatcgt cgaggccggg
      241 gtggtcggcg tcctgacggt cgcctatcgc gtgccgctac ccgaggcgac ggcgatcgcg
      301 ctgctggatc gggtcatcag cgtcttctcg atcatcgtgc tggggagcat cggctacgtc
      361 gtgtcgtcga agccgcgcgg gctcgacgcg gtggggcgca ggccggagac caccgccggc
      421 tgatcggctg acgacctggc cgcgcacgtt gcgagccaag cgcaaccgaa tcgccacgcc
      481 ctgacgcatc tgctgcgcgt cctcgaccgt acgctgggca cggtttcacc ttgggcatcc
      541 atgcgaaccg cgcgggattg tcccgcaccg gtacccgatg ggactcccag atggacctca
      601 gcccggtacg aacgggtgat acaggtcgcg cgggcgcgcg tggatagtga ggccagcgga
      661 tgacccaccc aggttcgttc ccagggagcg cccaggcacc catgaccaca cagaacggcc
      721 gagccttcaa cgagtggctc cggacgcagc tcaaggccaa gaagatgtcg cagcggcagc
      781 tcgcccagca gtcgggcgtg gaccactcga cgatctcgcg gctgatccgt ggcgatcgga
      841 tgccgtcgct ggggaccgcc accaagctcg cccgcggcct tcgcgagctg cgtgaggatg
      901 ccgacacgac ccagtacctc ggcgtcgtcg ggtccgcgaa caccaatccc accgcgcgcg
      961 tcgagtactc gctccgcgcc gacgagctgc tgtccgaggc gcaggtccgg cagatcatgg
     1021 agtactacct cgcggtgcgg atgcgccgct acggccgcgc cgtccagccg accgactcgc
     1081 cccactcgcc cgagcgagcc tccgagccca cctacatccg cccgcggacc acggacgcca
     1141 cggttgccgc cgtgagccgc accgctacag ccacgctgaa cggcctccga cccgtgtcgc
     1201 gaaccgcgac ccgcgagcca ggccgctact gagcacacat cgcgatccgg gtccgccctc
     1261 ccggcccggg tcctggggca cagcgaacgc cggcgtttgg ggcgccggcg ttcgcatttc
     1321 cggagtctga cggtttccgc ggtccgccca cggccgccta tcgcgcagcc agcaccggcg
     1381 cggcgccata gaccgagatg gtctggcgcg gggcagcccg gaaccgatcg acgagatcgg
     1441 ccgaccgccc acccaccgcc gcggcttcgg ccggaccgcc gcaggtcgcg ccgatggcgg
     1501 tctcgaacag cgaatcgcac acgacgacga gcggcccgcc gccaacgggc ggccgcccgc
     1561 ccaggctcac cgggtcgacc tgccggccgt cgcggcggag cgggtacacg taggcctcgg
     1621 cggtcttgaa ggtcggcagc gatccgatcg cgatcgggcc ctgcgggatc gccgcctgga
     1681 tcctggcggc ggccgcttgc gcggcgggaa agccgccatc ggacgcgacg acgggcggct
     1741 ggtgcgggac ggcccaggcg atcatggcca cgacccccac caccgcgagc agccgccccg
     1801 gcgtcatgac cggagcagtg gccgaggtcg tagccgcggg agccgccgag cctgccgccg
     1861 aggtcgccgt cgccacggcg cgtccgctcg cccgccacaa cgcggcgacg ccgacgccga
     1921 ccagcacgaa caccatcgga tccgcgaagg cgtgatagtg gtcgttggga aggccctcga
     1981 cgacggtcgc caggctgggc gagatgaccg tcagggcgag cgccgtccag gccagtccca
     2041 ggcccagcca gcggacggcg acccgttccg ggccgacggc cgc
//
LOCUS       DATDDI010000458         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_675844, whole genome shotgun sequence.
ACCESSION   DATDDI010000458 DATDDI010000000
VERSION     DATDDI010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675844"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VIU37_06550"
     CDS             <1..294
                     /locus_tag="VIU37_06550"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF024897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEY6013645.1"
                     /translation="ADEVTLDALERDGQVLFRYVDATGADAQPGNPANPNGSLRAIAG
                     VMNAAGNVAGLMPHPERAAEAILGSADGMGIVRSLVDSAARAAGTAPREAVAR"
     gene            291..>1739
                     /gene="purL"
                     /locus_tag="VIU37_06555"
     CDS             291..>1739
                     /gene="purL"
                     /locus_tag="VIU37_06555"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEY6013646.1"
                     /translation="MTVADRPIEPLHRRLGVTDEELEAIRDRLGGRDPNDLELAMFSV
                     MWSEHCSYKSSKPLLRTLPTEGAGVVAGPGENAGVISIGDGLAVAFKIESHNHPSAVE
                     PYQGAATGVGGILRDIFTMGARPIAVLDALRFGDPAGPRTRHLVDGVVRGVGGYGNCV
                     GVPTVGGELVFDPSYEGNPLVNVMAIGLLREELLTLAAAPGPGNLVVLYGSATGRDGI
                     GGASVLASATFTDDDPSKRPSVQVGDPFAEKLLIEASLELIERGLVEGLQDLGAGGIT
                     CATSETADRAGTGILVDLDAIPRREPGMAPFEVMISESQERMCAAVRRERWPAVQDVC
                     RRWGLPAAVIGRVTADGDIAIVEGGLDADGRAASGSREIARIPARALTSDAIVHPRVA
                     TPPAHRRDAPAPGVPMAVSDRLPERGMDPGAVLLALLGSANLSSRRAVFEQYDSTVGA
                     DTVAGPGRGAAVLRVRGTSKALVATTDGNHSVG"
BASE COUNT          228 a          633 c          649 g          229 t
ORIGIN      
        1 gccgacgagg tgacgctgga tgcgctggaa cgcgacggcc aggtcctgtt ccgctacgtc
       61 gacgccacgg gcgcggacgc ccagcccggc aacccggcca acccgaacgg ttcgctccgg
      121 gcgatcgccg gggtgatgaa cgcggccggc aacgtggccg ggctgatgcc gcacccggaa
      181 cgcgccgccg aggccatcct cggctcggcc gacgggatgg gcatcgttcg ctcgctcgtg
      241 gacagcgcgg cacgcgccgc cggcacggcg ccgcgcgagg ccgtcgcgcg atgaccgtcg
      301 cggaccggcc gatcgagccg ctccatcgcc ggctcggcgt gaccgacgag gagctcgagg
      361 ccattcgcga ccggctcggt ggccgcgatc cgaacgacct cgagctggcg atgttcagcg
      421 tgatgtggag cgagcactgc tcgtacaaga gctcgaagcc gctgctccgg accctgccga
      481 ccgagggggc cggcgtcgtg gccggtcccg gtgagaacgc cggcgtcatc tccatcggcg
      541 acggcctggc ggtcgcgttc aagatcgaat cgcacaacca tccctccgcc gtcgagccgt
      601 accagggggc cgcgaccggc gtcggcggga tcctccgcga catcttcacg atgggcgccc
      661 gaccgatcgc cgtgctcgac gcgctccgct tcggcgaccc ggccggcccg cggacccggc
      721 acctcgtgga cggcgtcgtc cgcggcgtcg gtggctacgg caactgcgtc ggcgtgccga
      781 ccgtcggtgg ggagctcgtg ttcgatccca gctatgaagg caacccgctg gtcaacgtga
      841 tggcgatcgg gctgctgcgc gaggagctgc tgacgctggc ggccgcaccc ggacccggca
      901 atctcgtcgt cctctacggc tcggcgaccg ggcgtgacgg gatcggcggg gcgtcggtcc
      961 ttgccagcgc cacgttcacc gatgacgatc cctccaagcg gcccagcgtc caggtcggtg
     1021 acccgttcgc cgagaagctc ctgatcgagg cgtcgctcga gctcatcgag cgcggcctgg
     1081 tcgagggcct ccaggacctc ggtgccggcg ggatcacctg cgccacctcg gagaccgcgg
     1141 accgggccgg gaccgggatc ctcgtggacc tcgacgcgat cccgcgccgt gagcccggca
     1201 tggcgccctt cgaggtgatg atctcggagt cgcaggagcg gatgtgcgcc gcggtccggc
     1261 gcgagcgatg gccggccgtc caggatgtct gcaggcgatg gggtctgccg gcggcggtca
     1321 tcggccgggt gaccgccgac ggcgacatcg cgatcgtcga gggcgggctc gacgccgacg
     1381 gacgagcggc ctccgggtcg cgcgagatcg ccaggatccc cgcccgcgca ctgacgagcg
     1441 acgccatcgt ccacccgcgg gttgccacgc caccggcgca tcggcgggat gccccggccc
     1501 ccggcgtccc gatggccgtg agcgaccggc tgcccgagcg cggcatggac ccgggtgccg
     1561 tcctgctggc gctgctgggc tcggccaacc tgtcgtcgcg gcgggccgtc ttcgagcagt
     1621 acgactcgac cgtgggggcg gacacggtgg ccgggccggg ccgcggcgcg gcggtcctcc
     1681 gggtcagggg cacgtccaag gccctcgtgg ccaccaccga cgggaaccac tcggtcggg
//
LOCUS       DATDDI010000459         1631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_301276, whole genome shotgun sequence.
ACCESSION   DATDDI010000459 DATDDI010000000
VERSION     DATDDI010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301276"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(424..1257)
                     /locus_tag="VIU37_06560"
     CDS             complement(424..1257)
                     /locus_tag="VIU37_06560"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013647.1"
                     /translation="MTSPGRELATVFALGRIIPPGTLGTRRARYLFERSVYLYRRQWL
                     VIASGFLEPLFYLLAVGFGVGALVGTLPGPDGQSVSYQVFVAPALLASSMMNGAITEV
                     MFNAYGKLRWEKVYDAVLATPLGVGDIALGEIAWAIFRGGLYAVGFVAVMALLGLLRS
                     PLALLTVPAALLEGFAFAAAGLAATTFVRGWQDFDLIQVVLQPLFLFSGTFFPLDLYP
                     EPLRIVVQLTPLYHAVALLRSLSIGLLDPGIVVHVIYLAVMGLIGLVVVSRRLDRLLL
                     R"
     gene            complement(1254..>1631)
                     /locus_tag="VIU37_06565"
     CDS             complement(1254..>1631)
                     /locus_tag="VIU37_06565"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013648.1"
                     /translation="AVRSPAIVLAVPVATLTGLAFATPIAAFAATQRTMNKFSYLFRF
                     AITPLFLFSGTFFPIEQLPAVIQPIAWVTPLYHGVALCRALALGTAGADPVGDLAHLA
                     VLVVFAVGGLLWSLRTFEARLAT"
BASE COUNT          292 a          564 c          610 g          165 t
ORIGIN      
        1 gacgcggttt gttggccggc ggcgcgcagc ggacggccgc cccgatccgg acatcggtca
       61 gcgtcagccc gtcgttcgcg cgccggctcg acggccggtc ggccaagccc gcgcgatgga
      121 gcgccgccca gaggaagtcg ccgctcgcat cgccggtgaa cacgcgaccc gtccggttgc
      181 caccatgcgc cgccggggcg aggccgatga cgaagatccg ggcgtcggga tcgccgaacc
      241 cgggcagcgg ccggccccag tacggctcgt cgcggaatcg ggcgaccttc tcgcgggcga
      301 cgcgctcgcg ccactcgacc agtcgcgggc acttgaagca gccgacgatg tcgcgttcga
      361 gctcggcgag cgccaggcgg cgcgcctccg cggcggctcc ggactcggcc cgggcgtgcg
      421 cgcctatcgg agcagcagcc gatcgaggcg gcgcgacacg acgacgagcc cgatcaggcc
      481 catcacggcc aggtagatca cgtgcacgac gatgcccgga tcgagcagcc cgatcgagag
      541 cgaccggagc agcgcgaccg cgtggtagag cggcgtcagc tgcaccacga tccggagggg
      601 ctccgggtag aggtcgagcg ggaagaacgt ccccgagaag aggaacaacg gctggagcac
      661 gacctggatc aggtcgaaat cctgccagcc gcggacgaac gtcgtggcgg cgagcccggc
      721 ggccgcgaag gcgaagccct cgagcagggc cgcgggaacc gtcaggagcg ccagcggcga
      781 tcggagcagc cccagcaggg ccatgacggc cacgaacccg accgcgtaga ggccgccgcg
      841 gaagatcgcc caggcgatct cgccgagcgc gatgtcaccg acacccagcg gcgtggcgag
      901 gacggcgtcg tagaccttct cccagcggag cttgccgtag gcgttgaaca tgacctcggt
      961 gatcgccccg ttcatcatcg aggaggccag cagggccggc gccacgaaca cctggtacga
     1021 cacggactgg ccgtcgggcc ccggcagcgt tcccacgagg gcgccgacac cgaagccgac
     1081 cgcgagcagg tagaacagcg gctcgaggaa gcccgaggcg atgacgagcc actgccggcg
     1141 gtacaggtag acgctccgct cgaacaggta ccgggcgcgc cgcgtcccga gcgtccctgg
     1201 cgggatgatc cggccgaggg cgaagaccgt ggcgagctcg cgtccgggcg aggtcacgtg
     1261 gccagccgcg cttcgaaggt ccggagcgac cacagcagcc cgcccacggc gaagaccacc
     1321 aggaccgcga gatgggcgag atcgccgacc ggatcggcac cggccgtccc gagggcgagc
     1381 gcgcggcaca gcgcgacccc gtggtacagc ggcgtgaccc aggcgatcgg ctggatgacc
     1441 gccggcagct gctcgatcgg gaagaacgtg ccgctgaaca ggaacagcgg cgtgatcgcg
     1501 aagcggaaca ggtagctgaa cttgttcatc gtgcgctggg tcgcggcgaa ggccgcgatc
     1561 ggcgtcgcga acgcgaggcc cgtgagggtc gccaccggga ccgcaaggac gatcgcgggc
     1621 gaccgcacgg c
//
LOCUS       DATDDI010000460         1837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_384681, whole genome shotgun sequence.
ACCESSION   DATDDI010000460 DATDDI010000000
VERSION     DATDDI010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384681"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..479
                     /locus_tag="VIU37_06570"
     CDS             114..479
                     /locus_tag="VIU37_06570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013649.1"
                     /translation="MAIASAKVVSGWLIDDQAGSDDAGFCVEMLHLDSVAAKAWEYGR
                     RDIDDVCEADAVVSFTGEGTRGGRHIEHGFAMMLHQCAPDLVRLIVVGPREHVFHCHP
                     ATEVYPDFAAFLKHEIDRA"
     gene            502..1641
                     /locus_tag="VIU37_06575"
     CDS             502..1641
                     /locus_tag="VIU37_06575"
                     /inference="COORDINATES: protein motif:HMM:NF012915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEY6013650.1"
                     /translation="MITGSVTVKPQAFAAAVKWAAKFLDARPSVPIWAGLMLEAGDGT
                     LRITAVNENVSAVAAVPVDGDGKGRTVVSGRLLGALVGTFTNADVTISGETETLTLVA
                     GRWTGTLPTMSEDDYPAVPDVPATIGTVSGDEFSRVVAEAAAATSKDTDKAANWRSIL
                     LTFGESEVRAIASDSLRAAGASAGFSRDAGEVGETALLLADAMVDVAAGFIGPDRIEV
                     GLSGTQLALSSATRSVVMRMMAGAEYPAAVISGLITQERPEHAVVTVADLTRPLKRAA
                     LMRDKDGPVAIRFTAGMMTIASSGGDVKRAGDEEIDVVYDGPEVTLHFNPGYLADALN
                     SAPGEQVDIGLTDKTGRGGRPEAVVLTVPGTEWRHVLMPIRPVGK"
     gene            1647..>1837
                     /locus_tag="VIU37_06580"
     CDS             1647..>1837
                     /locus_tag="VIU37_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013651.1"
                     /translation="MGKTLAEITAEIRENNVRKGFRSAEGGPGENTWGDYVALLHSEL
                     SEALEAYRDHRLADATEARR"
BASE COUNT          310 a          580 c          690 g          257 t
ORIGIN      
        1 attgagaccg aggatctgac cctcttcgac gccctgagtg catgatgcgg tactacttcg
       61 cgggggcata tgcccggcga gccgaactgg ccgggcgggc gatggaactg gagatggcaa
      121 tcgccagcgc caaggtcgta tcgggatggc ttatcgacga tcaggccgga tcggacgacg
      181 ccggattctg cgtggagatg ctgcacctcg actcggtggc cgcaaaggca tgggagtacg
      241 ggcggcggga catcgacgat gtctgcgagg ccgacgcggt cgtctcgttc accggcgagg
      301 gcacccgcgg tggacggcat atcgaacacg ggttcgccat gatgctgcat cagtgcgcac
      361 ccgatctggt ccggctgatc gtggtcgggc ctcgcgagca cgtgttccac tgccacccgg
      421 cgaccgaggt ctaccccgac ttcgccgcct tcctgaagca cgagatcgac cgggcgtagg
      481 cccggcgcga gaggagacga catgatcaca ggaagtgtca cggtcaagcc gcaggcgttc
      541 gcggcggccg ttaagtgggc ggcgaagttc ctcgacgccc ggccgtcggt gccgatctgg
      601 gccgggctga tgctcgaggc gggggacggc acgctgcgga ttactgcggt gaacgagaat
      661 gtgtcggcgg tcgccgccgt gcccgtcgac ggggacggca agggacggac cgtcgtgtcc
      721 ggacgcctgc tcggcgcgct ggtcggcacc ttcaccaacg cggacgtcac gatcagcggt
      781 gagacggaga cgctgacgct ggtcgccggg cggtggaccg gaaccctgcc gaccatgagc
      841 gaggacgact acccggccgt acccgacgtg ccggccacga tcggcacggt cagcggcgac
      901 gagttctccc gagtcgtcgc cgaggcggcc gcggcgacca gcaaggacac cgacaaggcg
      961 gcgaactggc gcagcatcct gctcaccttc ggtgagtccg aggtacgggc gatcgccagc
     1021 gactccctac gggccgccgg ggcgtcggcc ggattcagcc gggacgcagg cgaggtcggg
     1081 gagaccgcgc tgctgctggc cgatgcgatg gtggacgtgg cggccgggtt catcgggccg
     1141 gaccggatcg aggtcggact gtccggaacc cagctggccc tgtcgtcggc tacgcggtcc
     1201 gtggtcatgc ggatgatggc cggcgccgag tatccggccg ctgtcatcag cgggctcatc
     1261 acgcaggaac ggccggagca cgcggtcgtc accgtcgccg acctgacccg gccgctcaag
     1321 cgggccgcgc tcatgcggga taaggacggg ccagtcgcga tccggttcac cgccgggatg
     1381 atgaccatcg ccagctcggg cggagacgtc aagcgggccg gggacgagga gatcgacgtc
     1441 gtgtacgacg ggcccgaggt cacgctgcac ttcaaccccg gctatctcgc ggacgcactc
     1501 aactcggcgc cgggcgagca ggtcgacatc gggctgaccg acaagaccgg tcgcggtgga
     1561 cgcccggagg cagtcgtgct caccgtgccg ggaaccgagt ggcggcacgt gctcatgccg
     1621 atccggcccg tggggaagtg acgatcatgg gaaagacgct ggccgagatc acggccgaga
     1681 tacgcgagaa caacgtacgc aaggggttcc gatcggccga gggcgggccg ggcgagaaca
     1741 cgtggggcga ctacgtggct ctgctgcaca gcgagctgtc ggaggccctg gaggcgtacc
     1801 gggatcaccg gctggccgac gcgacggagg ctcggcg
//
LOCUS       DATDDI010000461         1803 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_488812, whole genome shotgun sequence.
ACCESSION   DATDDI010000461 DATDDI010000000
VERSION     DATDDI010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488812"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VIU37_06585"
     CDS             complement(<1..296)
                     /locus_tag="VIU37_06585"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6013652.1"
                     /translation="MKTILVVDDERHIVDLLRLYLEKEGFAVLAASDGDQALALHARH
                     DPDLVILDLMLPGKDGFEVCRELRRRGETPVLMLTARDDDIDAIVGLELGADDYV"
     gene            413..1300
                     /locus_tag="VIU37_06590"
     CDS             413..1300
                     /locus_tag="VIU37_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013653.1"
                     /translation="MFATLLGALPRPPLSPGASDLDLVEAAVRAQEDAGLEPVTDGGL
                     ENGRSPLDRWLAMAGLTSSAAKQDVIGPLTAARGGDRAAVLTAAEALNEDLRALAAAG
                     CPLIEVHEPAAVDIGADEPARRLFRDAHRRLLDGVDGPHLSLAIIGGNADATGIETLL
                     SAPYASLAVDLIAGPENWRLVVATPADRGIVCGALSPEAGSDDAPEVLLWAAAYAAST
                     AGRGPARVGLATAGSLARLSWEAAMAKMRRLGEAARLADLPPDELRRSIDPRAVDIRS
                     AAMGRFAPPPAPRGRRPGR"
     gene            1415..>1803
                     /locus_tag="VIU37_06595"
     CDS             1415..>1803
                     /locus_tag="VIU37_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY6013654.1"
                     /translation="MSEHITFVVNGIPRELDVEPRRLLVQALREDLDLTGTHVGCDTS
                     QCGACTVHVDGMAVKSCTMLAVQAEGSDVRTIEGLADGDTLHPLQAAFWEKHGLQCGF
                     CTPGMIMTAADLLARNADPSDDEIRHA"
BASE COUNT          234 a          643 c          673 g          253 t
ORIGIN      
        1 acgtagtcgt ccgcgccgag ctcgagtccc acgatcgcgt cgatgtcgtc gtcgcgggcg
       61 gtcagcatca ggaccggggt ctcgccgcgc cggcgcagct cgcggcagac ctcgaagcca
      121 tcctttccgg gcagcatcag gtccaggatc acgaggtcgg ggtcgtgccg cgcgtgcagg
      181 gccagggcct ggtcgccgtc gcttgcggcg agcacggcga agccctcctt ctcgagatag
      241 agccgcagca ggtcgacgat gtgccgctcg tcgtccacga ccaggatcgt cttcacgcgg
      301 ccaacgatag cgtcgggggt gggcccagcg ggcgcgcgac gtaagctctg tgtaagcggc
      361 gccgccggcg ggccagaacg gacgcggccg ggccgatggg gagcaccacg cgatgtttgc
      421 cacgctgctc ggggcgctgc cgcgtccgcc cctgtcaccc ggggcgagcg atctcgatct
      481 cgtggaggcg gcggttcggg cgcaggagga cgccggtctc gagccggtca ccgacggcgg
      541 gctggagaac ggccgctcgc cgctcgaccg gtggctggcg atggccgggc tgacgtcgag
      601 cgccgcgaag caggacgtga tcggcccgct gaccgcggca cggggagggg atcgggcggc
      661 ggtcctgacc gcggcggagg cgctcaacga ggatctccgt gcgctggccg ctgccggctg
      721 tccgctgatc gaggtccacg agccggcggc cgtcgacatc ggtgccgacg aaccggcccg
      781 gcggctcttc cgcgacgccc atcgccggct cctcgacggc gtcgacgggc cgcacctgtc
      841 gctcgcgatc atcggcggca acgccgacgc gacggggatc gagacgctgc tgtcggcacc
      901 gtacgccagc ctcgcggtcg acctgatcgc gggaccggag aactggcggc tggtggtggc
      961 gacccccgcc gatcgcggga tcgtctgtgg cgcgctgtcg ccggaggcgg gttcggacga
     1021 cgcgcccgag gtcctgctct gggcggcggc ctacgcggcg tcgaccgcgg ggcgcgggcc
     1081 ggcccgggtc ggcctggcga ccgcggggtc gctggcccgg ctgtcctggg aggcggcgat
     1141 ggcgaagatg cgccgcctgg gcgaggcggc ccgtctcgcc gacctgccgc cggacgagct
     1201 ccgccggtcg atcgacccgc gggccgtgga catccggagc gccgccatgg gccggtttgc
     1261 tccgccacct gcgccgcggg gtcgccgtcc cggtcgctga acctccgccg gggctcgctt
     1321 gattccgtgg gcctccggtg ccaccatcct cgcctccagg acttcagcgc tcgcagattc
     1381 gtccccacca gtgcgtcgca ggaggttctc gtccgtgagc gaacacatca cgttcgtggt
     1441 caacggcatt ccccgggaac tggacgtcga gcccagacgg ctgctggtcc aggccctgcg
     1501 cgaggacctg gacctgaccg ggacccacgt cggctgtgac accagccagt gcggggcctg
     1561 caccgtgcac gtcgacggca tggccgtgaa gtcgtgcacg atgctcgccg tccaggccga
     1621 gggttccgac gtgcggacga tcgagggcct cgccgacggc gacacgctcc acccgctcca
     1681 ggccgcgttc tgggagaagc acgggctcca atgcggcttc tgtacgccgg gcatgatcat
     1741 gaccgcggcc gacctgctgg cccgcaacgc cgatccgtcc gacgacgaga tccgtcacgc
     1801 gat
//
LOCUS       DATDDI010000462         2359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_176541, whole genome shotgun sequence.
ACCESSION   DATDDI010000462 DATDDI010000000
VERSION     DATDDI010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176541"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1717)
                     /locus_tag="VIU37_06600"
     CDS             complement(<1..1717)
                     /locus_tag="VIU37_06600"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEY6013655.1"
                     /translation="MFEPFADVPAYPLVFPLFWGAAAVFALAMARHLRVFAVARPSAP
                     FANLPARVVGLVEYAFIQTKMFKDPRAGLMHAGIFWGFVLLTIGTADVVTGGVIQTVL
                     AAPLDGAIWAAISAMQNVVALVVIASIGWAFVRRLVIKPARLTLNRDALLILSMIGGL
                     VAAELLAQCFQAARYGDVPGAIVANAVAVPLRSLAPGPLEIGFGLLWWLHIGLVAAFL
                     CYLPSSKHLHIATAFPNVFLRKLAPRGELPKMDLEDETATFGLKTLQDLGWKDLLDGF
                     TCTECGRCQQACPAWNTGKPLNPKHFIMGIRELSVEAEHGIDLIPNSPIVRETYGLDD
                     TRPAAAALARPIVDEAIPFDAVWDCVTCGACVEACPVLIEHVDKIVGLRRNLVLEESR
                     FPAELTTAFRAMENQGNPWGQPAGERTAWTRGLEFDVPVVADLAAAGRLDDLEVLYWV
                     GCAAAFDPRNQKVARAVATCLHAAGVEFAILGQEESCTGDPARRMGNDYVYQILAAGN
                     VDTLNRYGMGERTIVTACPHCFNTIGNEYGQLGGDFEIVHHSVYLRRLVREGRLKLAP
                     DKSAEA"
     gene            complement(1717..2241)
                     /locus_tag="VIU37_06605"
     CDS             complement(1717..2241)
                     /locus_tag="VIU37_06605"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HEY6013656.1"
                     /translation="MSDAIRPRSALVITASDGAAAGVRDDRSGVLVGERLLALGFRVE
                     RRVVPDDRAAIEAALIEGAREHGLVVTTGGTGLTPRDVTPQATATVIDYEVPGLAEAM
                     RAAGRAKTPMADLSRGIAGVRAGSLIVNLPGSPTGALESLEAIEAVLDHAIETLAGPY
                     DHGVTRHVEGGPPG"
BASE COUNT          345 a          838 c          860 g          316 t
ORIGIN      
        1 gcgcttcggc ggacttgtcc ggcgcgagct tgaggcggcc ctcgcggacg agtcggcgca
       61 ggtacaccga gtggtggacg atctcgaaat cgccgccgag ctggccgtac tcgttgccga
      121 tcgtgttgaa gcagtgcggg caggcagtca cgatcgtccg ttcgcccatc ccgtagcggt
      181 tgagcgtgtc gacgttgccc gcggcgagga tctggtagac gtagtcgttg cccatccggc
      241 gggccgggtc gccggtgcac gattcctcct ggccgaggat cgcgaactcg accccggcgg
      301 cgtggaggca ggttgccacg gcgcgcgcca ccttctggtt gcgcgggtcg aaggcggccg
      361 cgcagccgac ccagtagagg acttccaggt cgtcgagccg tcccgcggca gccagatcgg
      421 cgacgaccgg cacgtcgaac tcgaggccgc gcgtccaggc cgtccgttcg ccggcgggct
      481 ggccccacgg gttgccctgg ttctccatcg cccggaatgc ggtcgtcagc tcggccggga
      541 agcggctctc ctcgagcacg aggttgcggc gcagcccgac gatcttgtcg acgtgctcga
      601 tgagcaccgg gcaggcctcg acgcaggcgc cgcaggtgac gcagtcccac acggcgtcga
      661 acgggatcgc ttcgtcgacg atcggccggg cgagcgcggc ggcggccggc cgcgtgtcgt
      721 cgaggccgta cgtctcgcgc acgatcggcg agttcgggat caggtcgatc ccatgctcgg
      781 cctcgaccga cagctcgcgg atgcccatga tgaagtgctt cggattgagc ggcttcccgg
      841 tgttccaggc cgggcaggcc tgctggcaac ggccgcactc ggtgcaggtg aacccgtcga
      901 gcaggtcctt ccagccgagg tcctggagcg tcttgagccc gaacgtggcg gtctcgtcct
      961 cgaggtccat cttcggcagc tcgccacgcg gcgccagctt gcgcaggaag acgttcggaa
     1021 acgccgtcgc gatgtggagg tgcttgctcg acggcaggta gcacaggaac gccgccacga
     1081 gcccgatgtg gagccaccag agcagaccga acccgatctc gagggggccc ggggccagag
     1141 aacggagcgg cacggccacg gcgttggcca cgatcgcgcc cgggacgtcg ccgtagcgcg
     1201 cggcctggaa gcactgtgcc agcagctcgg cggcgaccag cccgccgatc atcgacagga
     1261 tcaggagggc gtcccggttg agcgtcagcc gcgcgggctt gatcaccagc cgccggacga
     1321 acgcccagcc gatcgacgcg atgacgacga gggcgaccac gttctgcatc gcactgatgg
     1381 cggcccagat cgcgccgtcg agcggcgccg ccaggaccgt ctggatgacg ccgccggtca
     1441 cgacgtcggc ggtcccgatg gtcagcagca cgaagcccca gaagatcccg gcgtgcatca
     1501 ggccggcccg cgggtccttg aacatcttcg tctggatgaa cgcgtactcg accagcccga
     1561 ccacgcgtgc cggcaggttc gcgaacgggg ctgacggccg cgcgaccgca aagacacgca
     1621 ggtggcgcgc catggcgagc gcgaagacgg cggcggcccc ccagaacagc gggaagacga
     1681 gcgggtaggc cgggacgtcg gcgaacggct cgaacatcag ccgggcgggc ctccttcgac
     1741 gtggcgcgtg acgccgtgat cgtacggccc ggcgagcgtc tcgatggcgt ggtcgagcac
     1801 cgcctcgatg gcctcgagcg attcgagggc gccggtgggg ctccccggca ggttgacgat
     1861 cagcgagccg gcacgaacgc cggcgatccc acgggacagg tccgccatcg gggtcttcgc
     1921 acggcccgcg gcgcgcatcg cctcggcgag cccgggcacc tcgtagtcga tcaccgtcgc
     1981 cgtcgcctgc ggggtcacgt cgcgcggcgt cagcccggtc ccgccggtgg tcaccaccag
     2041 gccgtgctcc cgggcgccct cgattagcgc cgcctcgatc gcggcccggt cgtcgggcac
     2101 cacccgacgc tcgacccgga acccgagcgc caacaggcgc tcgccgacga ggacccccga
     2161 gcgatcgtcg cggacgcccg cggccgcgcc gtcgctggcc gtgatgacga gcgcggaccg
     2221 tggccgaatc gcgtcgctca cgcgcgaccc gggcgcttgg atcccacccg gccggcgacc
     2281 cggcctcccg ggcgcgggcg gatcggccgg tcgtccaccg ggccgggggt ccggacccag
     2341 ctgccgctct tgccgccgg
//
LOCUS       DATDDI010000463         1556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_405557, whole genome shotgun sequence.
ACCESSION   DATDDI010000463 DATDDI010000000
VERSION     DATDDI010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405557"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..>1556
                     /locus_tag="VIU37_06610"
     CDS             238..>1556
                     /locus_tag="VIU37_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:490..492,aa:Sec)
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY6013657.1"
                     /translation="MPKSYVRLTQPLVRDTKGGELRPATWDEALDRTVAGFLAARAAH
                     GPTTFGTFSCSKATNEVNFAAQKFSRTVLGSNNIDSCNRTUHAPSVAGLATVFGAGGG
                     TSSYREVEETDLVVLWGSNARETHPIFFHHLLRGVRNGARLIAVDPRRTSSAEWADLW
                     LGLDVGSDIALANAVGREIIAAGLEHRGFIDHATEGFEAYKAKVEPYTLDYAERETGV
                     PADAIRELAHALATAPRAMICWTLGITEHHNAVDNVLALIDLVLLTGHVGRYGSGVNP
                     LRGQNNVQGGGDMGALPDRLPGFQHVENDELRARFDAEWGVAVPPKRGWHLSGMFDAM
                     ERGDLTAVYCIGENPVQSEADQERAIRLLSGLDFLVVQDLFLTKTAALADVVLPATAA
                     WAESDGTVTNSERRVQLVRKAVEPPDGARDDLAIIFELANRMGARWGA"
BASE COUNT          231 a          579 c          541 g          205 t
ORIGIN      
        1 tcttcgccgg catggccggc tcgcacgacg ccgacgtcgg gccgtggaag gcctacctcg
       61 ggatcctcct ccgccgcgac gacccgtccg ccgtccccgg ctgacgcggg gacgcgcctg
      121 cgcccgcaac cggcgacctg accggggccc ggcggtacac tcgttgagcc ggcgccgagg
      181 ccggcggtga accgcggcgg cgcgctcgcg ccaccggcac agcggcacgg aggacccttg
      241 ccgaagtcgt acgttcgcct gacccagccc ctcgtgcgcg acacgaaggg cggcgagctc
      301 cgtcccgcga cctgggacga ggcgctcgac cggaccgtcg ccgggttcct ggccgccagg
      361 gcggcccacg gcccgacgac gttcggcacc ttcagctgct cgaaggcgac caacgaggtc
      421 aacttcgcgg cgcagaagtt cagccggacc gtgctgggca gcaacaacat cgacagctgc
      481 aatcgcacgt gacacgcccc tagcgtcgcc ggtctggcga ccgtgttcgg tgccggtggc
      541 ggcacaagtt cataccgtga ggtcgaggag acggacctgg tcgtcctgtg gggcagcaac
      601 gcccgcgaga cgcacccgat cttcttccac cacctgctgc gcggcgtccg caacggcgcc
      661 cggctgatcg cggtcgaccc gcggcggacc tcctcggccg agtgggccga cctgtggctc
      721 gggctcgacg tgggcagcga catcgcgctg gccaacgccg tcgggcgcga gatcatcgcg
      781 gccgggctcg agcatcgcgg gttcatcgac cacgccaccg aagggttcga ggcgtacaag
      841 gcgaaggtcg agccgtacac gctcgactac gccgagcgcg agaccggggt cccggccgac
      901 gcgatccgcg agctcgccca cgcgctggca accgcgccgc gcgcgatgat ctgctggacg
      961 ctcgggatca ccgagcacca caacgcggtc gacaatgtcc tggccctgat cgacctggtg
     1021 ctgctgaccg gtcacgtcgg tcgctacggc tcgggcgtca acccgctccg cggccagaac
     1081 aacgtccagg gcggcggcga catgggcgcg ctccccgacc ggctgcccgg cttccagcat
     1141 gtcgagaacg acgagctccg ggcgcggttc gacgccgagt ggggcgtggc cgtcccgccg
     1201 aagcgcggct ggcacctgtc cggcatgttc gacgcgatgg agcgcggcga cctcaccgcg
     1261 gtctactgca tcggcgagaa cccggtccag tccgaggccg accaggaacg ggcgatccgg
     1321 ttgctgtccg ggctcgactt cctggtcgtc caggatctgt tcctgacgaa gaccgccgcg
     1381 ctcgccgacg tcgtcctgcc ggccaccgcg gcctgggccg agtcagacgg aaccgtcacc
     1441 aactccgagc gtcgcgtcca gctggtccga aaggcggtcg agccgcccga cggcgcccgc
     1501 gacgacctcg cgatcatttt cgagctggcc aaccggatgg gcgcccgctg gggcgc
//
LOCUS       DATDDI010000464         3354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_530240, whole genome shotgun sequence.
ACCESSION   DATDDI010000464 DATDDI010000000
VERSION     DATDDI010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530240"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /locus_tag="VIU37_06615"
     CDS             complement(<1..565)
                     /locus_tag="VIU37_06615"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6013658.1"
                     /translation="MFRSIHVPHAGSPSRRMTSLFLALLFLVAACSSGGSAVTSVAPA
                     TTMASPAVSIAATPTPSATPAPAFPTTLTDDEGTAVTLEAEPDTIVSLAPATTETLFA
                     LGVGDRIKGKVQDVFLYPPQAGDVPDLATFNSVDIEKIVALSPDVVFTGGNSFTDPEA
                     ITKLRSLGIAVVVLYAPTIDAVFKDIEL"
     regulatory      complement(661..800)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01482"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="The adenosylcobalamin (AdoCbl) riboswitch is found
                     in the 5'-untranslated regions of vitamin B12 (Cobalamin)
                     related genes in bacteria; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF01482"
     gene            1143..2084
                     /locus_tag="VIU37_06620"
     CDS             1143..2084
                     /locus_tag="VIU37_06620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013659.1"
                     /translation="MDETGTLAGQRLSLGLDGARSVRAQSLPAESFVAGPFGGIVLVG
                     SDDGTTSTVRAIDVAQGCAWSLATEADVIRRATIDPGGRTIYEMRVDRSTRADLGVWA
                     RSLDGTAAQRVLDPIGPDEQFGPTFTTEFAWDPSGRALAIQSCGEAACRTRFIAPDGA
                     ATFGGTAERDLGTMIGLDDGRLVGYLACPGLPCPVVAIDLTTGARTVLADQAGIGVLV
                     STPSGRRLVHETFLPSGLALRSVAMDGSAATDLGPLPDGVRLHPTPDRAEAATRVPPG
                     WALLATDGRIGPAGPADHGQLRHVPDGASVQLDEVIR"
     gene            2090..3085
                     /locus_tag="VIU37_06625"
     CDS             2090..3085
                     /locus_tag="VIU37_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013660.1"
                     /translation="MNPIRWAACLLVALLVLLTVASGAAAHGPDPIFSGRWNQNQDLR
                     YAWRSGAVPPSAYQGPINAAAADVNASRGSQAATFAYSSGASNLVGYGTGATCGTLGL
                     ACFTRNPTSSFTVWMREQGHRFDWGSLRWCQAYSSWPDGCYDVENIVLDELGHVEILN
                     HHGNLSGESDYLDAVVQELSRTKPKAGYNAHGLGRCDVAALQVQYDMQGWGAKYSTCL
                     SLTTTLTLAANPAAVAKGASTTLTATLKVADVASYSRLALNPVALRSVILQRRPSGTT
                     AWTTVGTMSNGATSGTYTQTLSLTARTDFRAVFATPSGEGLVGSTSPSITVSVGS"
     gene            complement(3124..>3354)
                     /locus_tag="VIU37_06630"
     CDS             complement(3124..>3354)
                     /locus_tag="VIU37_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013661.1"
                     /translation="GVSVGSGENGTSVVGSTTSVEVAVGPTIASEGRADARAADGWLV
                     GDGADATDDREGPAAALHAPSAMHATPNMRTI"
BASE COUNT          489 a         1184 c         1161 g          520 t
ORIGIN      
        1 tcagctcgat gtccttgaag accgcgtcga tcgtcggcgc gtacaggacg acgacggcga
       61 tgcccaggct tcgaagcttg gtgatcgcct ccggatcggt gaacgagttc ccgccggtga
      121 acacgacatc cggggacagg gccacgatct tctcgatgtc gaccgagttg aaggtggcga
      181 ggtcgggcac gtcacccgcc tgcggcgggt agaggaagac gtcctggacc ttgcccttga
      241 tccggtcgcc gacgccgagc gcgaacaggg tctcggtcgt ggccggtgcc agggacacga
      301 tcgtgtccgg ctcggcctcg agggtgaccg cggtgccctc gtcgtcggtc agcgtcgtgg
      361 gaaaggccgg cgccggggtc gcgctgggcg tcggcgtcgc ggcgatcgac acggccgggc
      421 tggccatcgt cgtcgcgggc gcgaccgacg tgacggccga gccgccgctc gaacacgcgg
      481 cgacgaggaa caggagcgcg aggaacaggc tcgtcatccg ccgcgatggc gagccggcgt
      541 gcggaacgtg gatggatcgg aacacgtgaa cctccggggg gatcggaggg gtcgcagaaa
      601 cgcaaacccc tcgattcgaa cgggtcgaac gaggggcttc agccggtggg tcgcacggtc
      661 ctgcctacct ttctctcgaa ggttcgagca tgcaccgtga ggtcggcgac cggacttccg
      721 ctcccggggg agcgttcacc gtagcgggac tgtgccggaa ttccaccggc ttcgcgacca
      781 cgcggcgtga cacaggtttg tcggcgtgag cctagcacga cccggtcccg cccggaccct
      841 tccgataagt ggccgatacg tggcgcctgc gaccatcgcc acctcgccct cctcccgcca
      901 ccacgtcccg ccggaggagt tcgatcgtgt tggagtcacg atggatacgt tggctcgggc
      961 caggcgtgat cggtgtgctc gccctgggca ccctttcgac gacgacgctg ggagcggggc
     1021 cgcgttcttg gacaccgccg ccgtgcaccg gaccaaccgg gcccggaagt gtcgccgcgg
     1081 cgccggcgcc agccggcctc gcggatctcg accgtgaggc ctggttccgg atggacccgg
     1141 tgatggacga gaccggaacg ctggccggcc agcgactgtc gctcggcctg gacggcgcgc
     1201 gttcggtccg ggcccagagc ctgcccgccg aatcgttcgt ggccgggcca ttcggcggga
     1261 tcgtcctcgt cggcagcgac gacgggacca cgtcgaccgt ccgggcgatc gatgtcgcgc
     1321 agggctgtgc ctggtcgctg gcgactgagg ccgacgtcat ccggcgagcg accatcgatc
     1381 cgggcggccg aacgatctac gagatgcggg tcgaccggtc cacgcgggcc gacctcggcg
     1441 tgtgggcgcg ttcgctcgac ggcaccgcgg cccagcgagt gctggacccg atcggtccgg
     1501 acgagcagtt cggaccgacc ttcacgaccg agttcgcgtg ggacccgtca ggtcgcgcgc
     1561 tcgcgatcca gtcatgtggc gaggccgcct gtcgcacgcg gttcatcgcg cccgacgggg
     1621 ccgcgacgtt cggcggcacg gccgagcggg acctcggaac gatgatcggc ctggatgacg
     1681 gccggctcgt cggctacctg gcctgcccgg gactcccctg ccccgtcgtc gccatcgacc
     1741 tgacgaccgg tgcgcggacg gtcttggccg accaggccgg aatcggcgtg ctggtttcga
     1801 ctccctctgg ccgccggctc gtgcacgaga cgttcctgcc gagcggcctc gcgttgcggt
     1861 ccgtcgccat ggacggttcg gcggcgaccg acctcggccc gctgcctgac ggcgtccggc
     1921 ttcatccgac gcccgaccga gcggaggccg ccactcgcgt cccgccggga tgggcgttgc
     1981 tcgccaccga cggacgaatc gggccggccg ggccggccga tcacggtcaa ctccgccacg
     2041 tccccgacgg cgcgtccgtc cagctcgacg aggtgatccg gtgagtcacg tgaatcccat
     2101 ccggtgggct gcctgcctgc tggtcgccct gctcgtgctc ctgacggtcg ccagcggtgc
     2161 ggcggctcat ggccccgacc cgatcttctc gggtcgctgg aaccagaacc aggacctgcg
     2221 ttacgcgtgg cgttccggcg ccgtgccgcc aagcgcctat caaggaccga tcaacgccgc
     2281 ggccgccgac gtgaatgcca gccgtgggtc gcaggcggcg acctttgcct actcgtccgg
     2341 cgcgtcgaac ctcgtcggct acggcaccgg cgcgacctgc ggcacgctgg ggctggcgtg
     2401 cttcacccgc aatccgacgt cgagcttcac cgtctggatg cgcgagcagg gtcaccggtt
     2461 cgactggggt tcgctgcgct ggtgccaggc gtactcgagc tggcccgacg gctgctacga
     2521 cgtcgagaac atcgtcctcg acgagctcgg acacgtcgag atcctcaacc atcacggcaa
     2581 cctgagcggc gaatccgact acctcgacgc cgtcgtccag gagttgtcgc gaacgaagcc
     2641 caaggccgga tacaacgccc acgggctggg ccgctgcgac gtcgcggccc tccaggtcca
     2701 gtacgacatg cagggctggg gtgccaagta ctcgacctgc ctcagcctga ccaccaccct
     2761 cacgctcgcc gcgaacccgg ccgcggttgc caagggcgcg tcaacgacgc tgacggccac
     2821 gctgaaggtc gccgatgtgg ccagctactc gcgattggcg ctcaacccgg tcgcgctgcg
     2881 gagcgtcatc ctgcaacgcc gaccgtcagg cacgaccgca tggacgaccg tcggcacgat
     2941 gtcgaacggc gccacgtccg gcacctacac gcagacactc agcctcactg cccggaccga
     3001 cttccgtgca gtcttcgcga ccccatccgg tgaaggcctg gtgggatcga cgtcgcccag
     3061 catcaccgta tcggtcggtt cctgatggga ggagaggagt gacatgaacg tgatgcgggc
     3121 ggctcagatc gtcctcatat tcggagtcgc gtgcatggcg ctcggcgcgt gcagcgcggc
     3181 tgctggaccc tcccgatcgt ccgtcgcgtc cgccccgtcg ccgaccagcc agccgtcagc
     3241 tgccctggcg tcggctctgc cttcggaggc tatcgttggt ccgaccgcca cctccaccga
     3301 cgtggtggac cccacgactg aggtcccgtt ctcgccggat ccgacgctga cgcc
//
LOCUS       DATDDI010000465         4047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_176593, whole genome shotgun sequence.
ACCESSION   DATDDI010000465 DATDDI010000000
VERSION     DATDDI010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4047
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176593"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1297)
                     /locus_tag="VIU37_06635"
     CDS             complement(<1..1297)
                     /locus_tag="VIU37_06635"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEY6013662.1"
                     /translation="MTQTAAPAADRPHRAAKRYIYAWGGGAAEGDATMRDLLGGKGAG
                     LAEMTNAGLPVPPGFTITTEACNDYFTAGEKLPDGLWDDVLVAVKEVESRTGKGFGNA
                     ADPLLVSVRSGAKFSMPGMMDTVLNLGLNEQTLHGLIALTGNERFGWDAYRRFIQMFG
                     RIVMDVKGERFDQALDAAKERHGAKQDTDLDAAALREVVEASKQIVREDTGRDFPSDP
                     YEQLDLAIKAVFASWFGKRAVDYRNNQKIAHDLGTAVNVVTMVFGNMGDDSGTGVAFT
                     RDPNTGEKVLFGEYLTNAQGEDVVAGIRTAPKISQMQTDMPAVYAEFQKIGQQLEQHY
                     RDVQDLEFTIERGKLYMLQTRSAKRTAAAAVKIAVDFVAEGLITKEEALGRIEPAHVD
                     QLLRDQFDPKARSKATRLAKGLNASPGAAVGKAVFDADTA"
     gene            complement(1474..2154)
                     /locus_tag="VIU37_06640"
     CDS             complement(1474..2154)
                     /locus_tag="VIU37_06640"
                     /inference="COORDINATES: protein motif:HMM:TIGR02453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 domain-containing protein"
                     /protein_id="HEY6013663.1"
                     /translation="MPIVADTFAGFRPEAIQFLADLAANNERTWFQPRKADYERLLKE
                     PLEALCTALAERFEARGIPLRADPARSPFRIYRDVRFSKDKSPYKTNIGASFPWVGDG
                     DGAGGYFHLAPGEIFVGGGMWHPEPARLKAFRRLVDADPSRIHAVIDDPAFAGMFGTV
                     SGERLSRVPQGYGADHPDAELLKLKGVVFMRRLSDGDAASPGLPDRLAETIQVGLPLL
                     RLLAALPA"
     gene            2310..3116
                     /locus_tag="VIU37_06645"
     CDS             2310..3116
                     /locus_tag="VIU37_06645"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6013664.1"
                     /translation="MILPDDERVIDPAAPQYNATLVRRVDITDDLAYFWVKYDEEPVP
                     FESGQYMTTGVFADGKLWQRPYSVASAPRVAGTEGYELYVRLVPIIRFTTLLWRPPVG
                     HRMRMIGPKGKFLLEPNDRRTHLFISTGTGIAPFMSMIRETMAEGRPRKTVVLHGCSY
                     VEELGYREELEDLQRDRAYPLTYVPTISRPNDPRNAGWTGRTGRAENVVRDVCHDLHL
                     RPDQTVVYICGNPDMILNAESVLMEHGFPEFHVKKELYWPKGKVAPVGAG"
     gene            3272..4021
                     /locus_tag="VIU37_06650"
     CDS             3272..4021
                     /locus_tag="VIU37_06650"
                     /inference="COORDINATES: protein motif:HMM:NF004862.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide/dihydroorotate dehydrogenase-like
                     FAD/NAD-binding protein"
                     /protein_id="HEY6013665.1"
                     /translation="MHSILSSQQLSPNVTKLVIEAPRIARIRQPGQFVIVRLGPGAER
                     IPLTIADADPTEGTITLIIQSVGKSTADLVDLRPGDAITDVAGPLGRPTDLIERGHAV
                     CVGGGVGTAVILPIAQELGRRGVRVTSVIGGRSREWVILEAELAAAGEVVTCTDDGSY
                     GRPGFVTQALEDVLKAGGVDAVYAVGPVPMMRAVSELTRPFGVATLVSLNAIMVDGTG
                     MCGGCRVTIDGKTRYACVDGPEFDGHQVDFR"
BASE COUNT          591 a         1407 c         1407 g          642 t
ORIGIN      
        1 ccgcggtgtc ggcatcgaag accgccttgc cgaccgccgc gccgggtgag gcattcaggc
       61 ccttcgccag gcgggtcgcc ttggaccgag ccttcgggtc gaactggtcg cgcagcagct
      121 ggtcgacgtg cgccggctcg atccggccga gcgcctcttc cttggtgatc aggccctcgg
      181 ccacgaagtc gacggcgatc ttgacggcgg ccgccgcggt ccgcttggcc gagcgcgtct
      241 ggagcatgta cagcttgccg cgctcgatcg tgaactcgag gtcctggacg tcgcggtagt
      301 gctgctcgag ctgctggccg atcttctgga actcggcata gaccgccggc atgtcggtct
      361 gcatctggct gatcttggga gcggtccgga tgcccgccac cacgtcctcg ccctgggcgt
      421 tggtcaggta ctcgccgaag aggaccttct cgccggtgtt cgggtcgcgg gtgaacgcga
      481 cgcccgtccc cgagtcgtcg cccatgttcc cgaagaccat ggtcaccacg ttgaccgcgg
      541 tgccgaggtc gtgggcgatc ttctggttgt ttcggtagtc cacggcgcgc ttgccgaacc
      601 agctggcgaa gacggccttg atcgcgaggt cgagctgctc gtacgggtcg ctcgggaagt
      661 cgcggccggt gtcctcgcgg acgatctgct tcgaggcctc gacgacctcg cgcagggcgg
      721 cggcgtcgag gtcggtgtcc tgcttcgcgc cgtggcgctc cttagctgcg tcgagcgcct
      781 ggtcgaagcg ctcgcccttc acgtccatga cgatccggcc gaacatctgg atgaaccggc
      841 ggtaggcatc ccagccgaac cgctcgttgc cggtcagcgc gatcagcccg tggagcgtct
      901 gctcgttcag gcccaggttg aggaccgtgt ccatcatccc gggcatggag aacttggcgc
      961 cggagcgcac cgagacgagc agcggatcgg cagcattgcc gaagcccttg ccggtccggc
     1021 tctcgacctc cttgacggcg acgaggacgt cgtcccagag cccgtccggg agcttctcgc
     1081 cggccgtgaa gtagtcgttg caggcctcgg tcgtgatcgt gaaaccgggc ggcaccggca
     1141 gcccggcgtt ggtcatctcc gcaaggccgg cgcccttccc gccgagcagg tcgcgcatcg
     1201 tcgcgtcgcc ttcggccgcc ccaccgcccc acgcgtagat gtagcgcttg gcggctcggt
     1261 gtggacggtc tgcggcaggg gcagcggtct gggtcatcgg aacgggtcct ccgggtgggg
     1321 cgcggcggga gcgagaccgc gtgtgggttt gttcgtacgt gttggattgt agcgtcggtc
     1381 tggtttgggc ctcggttgca cctcggttgc gagtgcacct gaaacgtgcc cgcctccgga
     1441 ccgtcaggtg cccgacgatg gcacgcctgg cgatcaggcc gggagcgccg ccagcagccg
     1501 caggaggggc aacccgacct ggatcgtctc ggccaggcgg tcgggcaggc ccggcgacgc
     1561 ggcatccccg tccgacagcc ggcgcatgaa caccacgccc ttgagcttga gcagctcggc
     1621 gtccgggtga tctgccccgt acccctgcgg gacgcggctc agccgctccc cggagaccgt
     1681 cccgaacatg ccggcaaacg ccggatcgtc gatgaccgcg tggatgcggg acggatcggc
     1741 gtcgacgagc cggcggaagg ccttcagacg ggccggctcc gggtgccaca tccccccgcc
     1801 gacgaagatc tcgccgggcg cgaggtggaa gtaccctccg gcgccgtccc cgtcgccgac
     1861 ccacgggaag ctggcgccga tgttggtctt gtagggggac ttgtccttcg agaaccggac
     1921 gtcgcggtag atccggaacg gtgaccgagc gggatcggcc cggagcggga tgccgcgggc
     1981 ctcgaaccgc tccgcaaggg cggtgcacag cgcctcgagc ggctccttga gcagccgctc
     2041 gtagtctgcc ttgcggggct ggaaccacgt ccgctcgttg ttggcggcca ggtcggccag
     2101 gaactggatg gcttcgggcc ggaacccggc gaacgtgtcg gcgacgatcg gcatcggagg
     2161 gacctcggct acgcccggat tgtacggcgg gccgcggaca cgcccggccc ggcccgatcc
     2221 cacccgtgcc gcgaattcgg gcgacgggag gggccggacg ggtaccatcc gcgggacacc
     2281 atctcggagc ccgacggagg ccgatcggca tgatccttcc cgacgacgaa cgcgtcatcg
     2341 atcccgccgc gccgcagtac aacgccacgc tcgtccgccg cgtcgacatc acggacgatc
     2401 tcgcctactt ctgggtcaag tacgacgagg aaccggtgcc gttcgagtcc ggccagtaca
     2461 tgacgaccgg cgtgttcgcc gacggcaagc tctggcagcg accctattcg gtggcgtccg
     2521 cgccgcgcgt cgccggcacc gaggggtacg aactgtacgt tcgcctcgtc ccgatcatcc
     2581 ggttcacgac gctcctgtgg cggccgccgg tcgggcaccg gatgcggatg atcggaccca
     2641 aggggaagtt cctgctcgag ccgaacgacc gccggacgca cctgttcatc tcgaccggga
     2701 ccggcatcgc gccgttcatg tcgatgatcc gcgagaccat ggccgagggc cgtccgcgca
     2761 agacggtcgt cctccacggg tgctcctatg tcgaggagct cggctaccgc gaggagctgg
     2821 aggacctcca gcgcgaccgc gcctacccgc tgacctacgt cccgacgatc agccggccga
     2881 acgacccacg caacgccggc tggaccggcc gcaccggccg ggccgagaac gtggtccgcg
     2941 acgtctgcca cgacctgcat ctccggccgg accagaccgt cgtctacatc tgcggcaacc
     3001 ccgacatgat cctcaacgct gaatcggtcc tgatggaaca cgggttcccc gagttccacg
     3061 tcaagaagga gctctactgg ccgaagggca aggtcgcgcc ggtgggggcc ggctgaaccc
     3121 agcattcagc aactcggacg gcggggagca tcgcgcctgc gggcggcgtc tgcgggcggc
     3181 aaggtcccgg tcgcatgtga cattcggccc gcgccttacg ggccgaccga cgcataggcc
     3241 ggtcgggtcc gacatctagc attgacgcac gatgcattcg atcctgtcgt cccagcagtt
     3301 gtcccccaac gtcacgaaac tcgtcatcga ggcgccccgg atcgcgcgga tccggcagcc
     3361 cggccagttc gtcatcgtcc ggctcggacc gggcgccgag cgaatcccgc tgacgatcgc
     3421 cgacgccgat ccgacagagg gcacgatcac cctgatcatc cagtcggtcg gcaagagcac
     3481 ggcggacctc gtcgacctgc ggcccggcga cgcgatcacc gatgtcgcgg gcccgctcgg
     3541 ccgcccgacc gacctgatcg agcgtggcca cgcggtgtgc gtgggtggcg gcgtgggcac
     3601 ggcggtcatc ctgccgatcg cccaggagct cggccggcgc ggcgtccggg tcacgagcgt
     3661 catcggcggc cgctcacgcg agtgggtcat cctcgaagcc gagctcgccg cggccggtga
     3721 agtcgtgacc tgcaccgacg acggcagcta cggccgcccc ggcttcgtca cccaggcgct
     3781 cgaggacgtc ctcaaggccg gcggcgtgga tgcggtctac gcggtcgggc cggtcccgat
     3841 gatgcgtgcc gtcagcgagc tcacccgtcc gttcggcgtc gcgaccctgg tctcgctcaa
     3901 cgcgatcatg gtcgatggca ccgggatgtg cggcggctgc cgcgtgacga tcgatggcaa
     3961 gactcgctac gcctgcgtcg acgggcccga gttcgatggc caccaggtcg atttccgcta
     4021 gctgtccgac cggctgacga cctatcg
//
LOCUS       DATDDI010000466         4290 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_280688, whole genome shotgun sequence.
ACCESSION   DATDDI010000466 DATDDI010000000
VERSION     DATDDI010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4290
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280688"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..1197
                     /gene="dnaJ"
                     /locus_tag="VIU37_06655"
     CDS             82..1197
                     /gene="dnaJ"
                     /locus_tag="VIU37_06655"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEY6013666.1"
                     /translation="MATTERDYYLILGVERTATDAEIKRAYRKLAQQWHPDVNNDPAA
                     HDRFTEINEAYQVLSDPDRRGRYDMFGRAGVGGAGAPGFDTFSGFSDIFDAFFGGGAA
                     AAGGARRGRPLPGADLRYDLRITFEEAVKGTEKEIEFPVLIRCETCLGSGAKPGTEPT
                     SCPQCNGRGEVRSIRQTMLGQMVNVSACPRCGGEGRIVETPCETCRGDGRIERRRTLR
                     VTIPAGIDEGHQIRLSNEGEVGPRGGAAGSLYVAVHVQPHPSLKRDGTELYFEAQVSI
                     AQAALGTKITVPTVDGDEEVEIKPGTQPATEIRLRGKGVPHLRRGVRGDLHVLVDVVV
                     PTRLSKRARELLAAYAEESGESVETGHGGIREKLGLG"
     gene            1194..2207
                     /gene="prmA"
                     /locus_tag="VIU37_06660"
     CDS             1194..2207
                     /gene="prmA"
                     /locus_tag="VIU37_06660"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEY6013667.1"
                     /translation="MSATRARGRRPATAARPTTGPGTGSTDPGSGAWLELAIDADVEA
                     VEAISEILGRAAPGGTSVEPAFELVDEGLGARVDPSRPATVRAYLPARDRAAADRAVG
                     AVAEALGHLRAFGLRPIGELRTRLVHEADWAEAWKAYFPVLRVGRRLVIRPTWRRHRR
                     EPDDVVLALDPGMAFGTGLHPTTRLCLAALEGLADQGMVAGERVLDVGCGSGILAITA
                     LKLGAASAIGVDTDPIAIEATLANARRNRVARRLRARQGSLPSDAPAFDLVLANLIAG
                     VLVPLAPLLRNELRPGGTLVASGIFVDREAEVRIAFEGVGLAVVDRHAEGDWVALDAR
                     RSA"
     gene            2281..2739
                     /locus_tag="VIU37_06665"
     CDS             2281..2739
                     /locus_tag="VIU37_06665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013668.1"
                     /translation="MPWFFPILLVAHVTLALTLVLPSILLPFALRARRATVESGSGVV
                     QTLLWAQSNGSAVIGIGLAITGIGLVLSLGTGLLRQGWLLLALAIYAVTLGIALFIQR
                     PNLRALIGIRAGADDDRWRARAQRQRYVSYLMAGLVGTIGFLMSSKPVLW"
     gene            2736..3101
                     /locus_tag="VIU37_06670"
     CDS             2736..3101
                     /locus_tag="VIU37_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEY6013669.1"
                     /translation="MSAESAAAPACLFCRIVAGEIPSTRVHDDDLVIAIRDIAPRAPT
                     HILLMPRRHIPSATDLTEADGPLLGRLFAVAADLARSEGIADGGYRLTLNVGRWGGQT
                     VDHLHVHLMGGRPFDWPPG"
     gene            3098..3637
                     /locus_tag="VIU37_06675"
     CDS             3098..3637
                     /locus_tag="VIU37_06675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013670.1"
                     /translation="MKSAALGALAALLVALLTAGCATTEVPAQTFPAASIGPSTTVSP
                     AVNQTRAALVAALATHQLVLTDTQAPVRPVESPLLATAPRAVYQVVLPKDPTRGFIVV
                     YEFPDASAAVLAAAEEQHYLETGPGRIQSPEGSVQVLRQVGATLVFYDWLPGAAQDPA
                     APEIQQALETVGVGFPVGG"
     gene            complement(3734..>4290)
                     /locus_tag="VIU37_06680"
     CDS             complement(3734..>4290)
                     /locus_tag="VIU37_06680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013671.1"
                     /translation="GLGTVGRPPAGIEMRLAGDGEVQFRGAPLFKGYWQDAAATAAAF
                     TDDGWYRTGDIGHLDAGGRLVLSGRSKDMIVLPNGFNVYPEDIENALRIAGLRDSVVV
                     ETRPGRIEAIVLAGAAGGGDAASLRTTLDAMVKAANARLGPNQRIAAWRLWPEEDFPR
                     THTYKIRRAPIRDWAIADTVVPEP"
BASE COUNT          555 a         1556 c         1582 g          597 t
ORIGIN      
        1 ggcgccggcc gacgcatggg gccccacgct tgaagcctga gcggaccggc ggcgccgcct
       61 cccgtatcct tctcgtccag catggccacc accgagcgcg actactacct catcctcggc
      121 gtcgagcgca ccgcgaccga cgccgagatc aagcgcgcgt accgcaagct cgcccaacag
      181 tggcacccgg acgtcaacaa cgaccccgcc gcccacgacc ggttcaccga gatcaatgag
      241 gcctaccagg tcctgtccga tcccgatcgg cggggtcggt acgacatgtt cgggcgggcc
      301 ggcgtgggtg gcgcgggggc gcccgggttc gacaccttca gcggcttcag cgacatcttc
      361 gacgccttct tcgggggcgg ggccgcagcc gccggcggcg cgcgacgtgg tcggccgctc
      421 cccggcgcgg acctccgcta cgacctgcgg atcacgttcg aggaggcggt caagggaacc
      481 gagaaggaga tcgagttccc ggtcctgatc cgttgcgaaa cctgccttgg cagcggcgcc
      541 aagccgggca cggagccgac gagctgcccg cagtgcaacg gtcgaggcga agtgcgctcg
      601 atccggcaga cgatgctcgg ccagatggtc aacgtcagcg cctgtccacg ctgcggcggc
      661 gagggccgga tcgtggagac gccgtgcgag acgtgccgcg gcgacggccg gatcgaacgg
      721 cggcgcacgc tccgggtcac gatcccggcc gggatcgacg agggccacca gatccggctg
      781 tcgaacgagg gcgaggtcgg accgcgcggc ggcgcagcgg ggagcctgta cgtcgccgtt
      841 cacgtccagc cgcacccgtc gctcaagcgc gacggaacgg agctctactt cgaggcccag
      901 gtgtccatcg cccaggcggc gctcgggacg aagatcacgg tgcccacggt cgatggcgac
      961 gaggaggtcg agatcaagcc cggtacccag ccggcgaccg agatccggct ccgcgggaag
     1021 ggcgtccccc atctccggcg cggcgtccgc ggcgacctgc acgtgctggt ggacgtcgtc
     1081 gtgccgaccc gcctgtccaa gcgggcgcgt gagctgctcg cggcctacgc cgaggaatcg
     1141 ggggaatcgg tcgagacggg gcacggcggc atccgcgaga agctcgggct cggttgagcg
     1201 cgactcgggc gcgcgggagg aggccggcga ctgcggcccg tcccacgacc ggtccgggga
     1261 ccggctcgac ggatccgggg tccggcgcct ggctcgagct ggcgatcgac gccgacgtcg
     1321 aggcggtcga ggcgatcagc gagatcctcg gtcgtgcggc gccgggcggg acatccgtcg
     1381 agcccgcctt cgagctcgtc gacgagggtc tcggcgcgag ggtggacccc agccggcccg
     1441 cgaccgtccg cgcctacctg ccggcccgcg accgggcggc ggcggatcgg gcggtgggcg
     1501 ccgtcgccga ggcacttggg catctgcggg cgttcgggct tcgcccgatc ggcgagctcc
     1561 ggacgcggct cgtccatgag gccgactggg ccgaggcgtg gaaggcctac ttcccggtcc
     1621 tgcgggtcgg ccgccggttg gtcatccggc ccacgtggcg gcgccaccgt cgcgaaccgg
     1681 acgacgtcgt gctcgcgctc gatcccggga tggccttcgg caccgggctg catccgacga
     1741 cacgcctctg cctggcggcc ctcgaagggc tggccgatca agggatggtc gccggcgaac
     1801 gggtcctcga cgtcggctgt ggctccggga tcctggcgat caccgcgctg aagctcggtg
     1861 cggcgtcggc gatcggtgtc gacaccgatc cgatcgcgat cgaggcgacg ctcgccaacg
     1921 cccgtcgcaa tcgcgtcgcc cggcggcttc gggcacgcca gggcagcctc ccgagtgacg
     1981 cccctgcatt cgacctggtg ctcgccaacc tgatcgccgg cgtcctcgtg ccgctcgcgc
     2041 cgctgttgcg gaacgagctg cgaccgggcg gcacgctggt ggcatcgggg atcttcgtcg
     2101 accgggaggc cgaggtccgg atcgcgttcg agggcgtcgg gctcgccgtg gtcgaccgcc
     2161 atgcggaagg cgactgggtg gcgctcgatg cgaggcggag cgcgtgaggc ggcatcgccg
     2221 cgcggccccg ggccacccgg cgaacccgac gcgcgcgccg gtcgccctac aatcgcggcc
     2281 atgccctggt tcttcccgat cctgctggtc gcgcacgtga ccctggccct gaccctcgtc
     2341 ctgccgtcga tcctgctgcc gttcgcgctc cgggcgcgtc gcgcgaccgt ggagtcgggg
     2401 agtggcgtgg tccagacgct cctctgggcg cagtcgaacg ggagcgccgt catcgggatc
     2461 gggttggcga tcaccgggat cgggctcgtg ctctcgctgg ggaccgggct gctccgccag
     2521 ggctggctgc tgctggcgct ggcgatctac gcggtcacgc tcggcatcgc gctgttcatc
     2581 cagcggccga acctgcgcgc cctgatcggg atccgggcgg gcgccgacga cgatcgctgg
     2641 cgggcgcggg cacaacgcca gcgctacgtg tcgtacctga tggcgggcct ggtcggcacg
     2701 atcgggttcc tgatgagctc gaagccggtg ctctggtgag cgccgaatcg gcggcagcgc
     2761 ccgcctgcct gttctgccgc atcgtcgccg gcgagatccc gtccacgcgc gtccacgacg
     2821 atgacctcgt catcgccatc cgcgacatcg cgccgagggc gccgacgcac atcctgctga
     2881 tgcctcgccg gcacatcccg tccgccaccg acctgaccga ggcggacggc ccgctgctcg
     2941 gccggctgtt cgctgtggcc gccgacctgg cgcgctcgga ggggatcgcc gacggtgggt
     3001 accggctgac cctgaacgtg ggtcgctggg gcggccagac cgtggaccac ctgcacgtcc
     3061 acctgatggg cggccgcccg ttcgactggc ccccgggttg aagtcggccg ccctcggcgc
     3121 gctcgctgcc ctcctcgtgg cgctgctcac cgccggctgc gccacgaccg aggtgcccgc
     3181 ccagaccttc ccggctgcgt cgatcggtcc gtcgacgacg gtcagcccgg ccgtcaacca
     3241 gacccgggcc gcgctcgtcg cggcactcgc cacccaccag ctggtgctga ccgacaccca
     3301 ggcgccagtg cggccggtcg agtcgccact gctggcgacg gcaccgcgcg ccgtctacca
     3361 ggtggtgctg ccgaaggacc cgacgagggg tttcatcgtg gtgtacgagt tccctgatgc
     3421 ctcggccgcg gtgctggccg ccgctgagga gcagcactac ctcgaaaccg gtcccgggcg
     3481 gatccagtcg cccgagggtt cggtccaggt cctgcgccag gtcggcgcga cgctcgtctt
     3541 ctacgactgg ctgcccggcg ccgcacagga cccggcggcg cccgagatcc agcaggcgct
     3601 cgagaccgtc ggggtcggat tcccggtcgg cgggtaggcg cgtgtcggcc ctctagggcc
     3661 cggggggggc cgggcggaac ggcccggcga cggaccgcgg ccagcgaaca ggacgccgct
     3721 ggcgatcctc gccctacggc tcggggacca ccgtgtcggc gatcgcccag tcccggatgg
     3781 gcgcccgccg gatcttgtag gtgtgcgtcc gggggaagtc ctcctccggc cacagccgcc
     3841 aggccgcgat ccgctggttc gggccgagcc gggcattggc cgccttgacc atggcgtcga
     3901 gcgtcgtccg gagcgacgcg gcgtcgccgc cgcccgccgc gccggcgagg acgatcgcct
     3961 cgatccggcc gggccgcgtc tcgaccacca cggaatcgcg caggccggcg atgcggaggg
     4021 cgttctcgat gtcctccggg tagacgttga agccgttcgg caggacgatc atgtccttgc
     4081 tccgacccga caggacgagc cggcccccgg cgtcaaggtg gccgatgtcg ccggtccgat
     4141 accagccgtc gtcggtgaac gcggcggcgg tggcggcagc gtcctgccag tagcccttga
     4201 acagcggtgc tccgcggaac tggacctcgc cgtcgccggc gagccgcatc tcgatgccgg
     4261 cgggcggacg gccgaccgtg ccgagaccgt
//
LOCUS       DATDDI010000467         1737 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_51825, whole genome shotgun sequence.
ACCESSION   DATDDI010000467 DATDDI010000000
VERSION     DATDDI010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51825"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1458)
                     /locus_tag="VIU37_06685"
     CDS             complement(<1..1458)
                     /locus_tag="VIU37_06685"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase domain-containing protein"
                     /protein_id="HEY6013672.1"
                     /translation="MPTEKEVLRIAGREVTVTNPGKVYFPQTGHTKLDLVKYYLAVAD
                     GALRGAGGRPMALKRFVDGAAGQPFFQKRAPDNRPAWIRTATLTFPSGRTADEIVIDD
                     AAGLAWVVNLGCIDLNPHPVRAEDLDHPDELRVDLDPVPGVPWSDIREVALATKEALE
                     AVGLVGWPKTSGSRGIPVNVRIEPRWTYPEVRRAALAIARDVERRVPALATSKWWKEE
                     RHGVFLDYNQNAKDRTVASAYSIRPLPDARVSTPLAWDEVPTVEAEAFTIDTVPGRYA
                     AIGDPGDGIDAAVGSLEALLELSRRHEAEGLGDAPWPPNYAKQAGEPPRVQPSRQRRA
                     AGEYEPGRGEAGGPPPEVAKARRAAVERGDPNAGLPTEWAGSRPTPTGRRRSSIPVVE
                     IARAEHKDEAMAGFERWKARHPVAAAALEPADVLVDSMRGRSTTWTRVRVNLIHVPEG
                     DRPAQEPLEVDYDPWAGYEWPDRPGQMERAPRRKKN"
BASE COUNT          216 a          633 c          625 g          263 t
ORIGIN      
        1 gttcttcttc ctgcgcggcg cgcgctccat ttgcccgggc cggtccggcc attcgtagcc
       61 ggcccacggg tcgtagtcga cctcgagcgg ctcctgggcc ggccggtcgc cctccggaac
      121 gtggatcagg ttgaccctga cgcgcgtcca ggtggtcgac ctgccgcgca tcgaatcgac
      181 cagcacgtcc gcgggctcga gggccgccgc ggccaccgga tgacgcgcct tccagcgctc
      241 gaacccggcc atcgcctcgt ccttgtgctc ggcccgggcg atctccacga ccgggatcga
      301 cgaccggcgc cgtccggtgg gggtgggccg cgagccggcc cattccgtcg ggagcccggc
      361 gttcgggtcg ccccgttcga ccgctgcccg gcgcgccttc gcgacttcgg gcggcgggcc
      421 gccggcttcg ccacggcccg gttcgtactc gccggcggcc cgccgctggc gcgacggctg
      481 gacccgcggc ggttcaccgg cctgcttggc gtagttcggt ggccacggtg cgtcgcccag
      541 gccctcggcc tcgtgccgcc gactgagctc gagcaacgcc tcgagcgatc caacggccgc
      601 gtcgatcccg tcgcccgggt cgccgatcgc ggcataccgg cctggcaccg tgtcgatcgt
      661 gaacgcctcg gcctcgacgg tgggcacctc gtcccaggcg agcggcgtgg agactcgagc
      721 gtcggggagc ggccggatcg agtaggcgga ggcgaccgtc cggtccttgg cgttctggtt
      781 gtagtcgagg aagacgccgt ggcgctcctc cttccaccat ttcgaggtgg ccagggccgg
      841 gacccggcgc tccacgtccc gggcgatcgc gagcgccgct cgccggacct ccgggtaggt
      901 ccagcgcggc tcgatccgga cgttgacggg gatcccgcgc gaaccggacg tcttgggcca
      961 gccgaccagg ccgacggctt cgagcgcctc cttcgtggcc agggcgacct cgcggatgtc
     1021 ggaccacggg acgcccggca cgggatcgag gtcgacccga agctcgtcgg gatggtcgag
     1081 gtcctcggcg cggaccgggt ggggattgag atcgatgcag ccgaggttga cgacccaggc
     1141 gaggcccgcc gcgtcgtcga tcacgatctc gtcggcggtg cgtcccgagg ggaacgtcag
     1201 cgtcgccgtc cggatccatg ctggccggtt gtccggcgcg cgcttctgga agaacggctg
     1261 cccggcggcg ccgtccacga accgcttgag cgccatcggc cgcccgccgg cgccgcgcag
     1321 cgcgccgtcg gcgaccgcca ggtagtactt caccaggtcc agcttcgtgt ggccggtctg
     1381 cgggaagtac accttgcccg gattcgtgac cgtcacctcg cggccggcga tccggaggac
     1441 ctccttctcg gtgggcatgg cggacaagat accgctcgac agccgatccg ggtccatgga
     1501 tgatgcccgc acgctgcgca gccgaaggct gtcgatccgg cgccccctcg ttcgtcgtga
     1561 tcacagcggg tgcccgtcga ggcgcccatc agcagggaga cgagcatgca gtacctcctc
     1621 ctgatctacg gcgaggaacc ctccgaggcg gcctccgagg acctgatggc cgccgagtac
     1681 cgggagtacg gcgagttcac gacctacctc cgggagcggg gcgcgatgct cgccggc
//
LOCUS       DATDDI010000468         1608 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_363982, whole genome shotgun sequence.
ACCESSION   DATDDI010000468 DATDDI010000000
VERSION     DATDDI010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363982"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1208
                     /locus_tag="VIU37_06690"
     CDS             <1..1208
                     /locus_tag="VIU37_06690"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEY6013673.1"
                     /translation="LGGHPHRIPKTQETPMHRFTRLVALGGTLAALLVGSTTGVYAAA
                     PGRAVVGHVYVNNNSAGENSVAGFDRYADGTLTAIAGSPFPAGGAGTGSVLGSAGAIQ
                     LSSDGRFVLAVDAGSNEISVLRVRHDGSLDLVETEGSNGATPVSIAVSGDLVYVANLG
                     AGASNYTGFTLNAGGHLRPIGDSTYALPDNALPGHVLFSGDGRHLVGTRVGPNAGPSF
                     IDSFSVGTDGRLTPAPGSPFAAQRIGPFGSAFRPTNPDQLFVSNAHDGALAGSVSAYD
                     VAGDGTLTAIGNSPFADNQTAPCWVEISHDGNFLFAINTGSGSISSYGIAADGGLSLL
                     GSVPFNAATGLRPFDARLDPTGDFLYVVDAGAAKVSAFAVDGGTLTELPSSPIAIPGG
                     VAPFGIVVD"
     gene            1366..>1608
                     /locus_tag="VIU37_06695"
     CDS             1366..>1608
                     /locus_tag="VIU37_06695"
                     /inference="COORDINATES: protein motif:HMM:NF017280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylxylan esterase"
                     /protein_id="HEY6013674.1"
                     /translation="MPQSDFPLDELRRYSPTIAVPADLDRFWADTLADARRHPLAATF
                     EPIDNGLRVISSFDVTFAGFGGSPIRAWLHLPADRPG"
BASE COUNT          213 a          627 c          531 g          237 t
ORIGIN      
        1 gcctgggtgg ccacccgcac cgaatcccca agacccagga gaccccaatg catcgattca
       61 cgcgcctggt ggcgctcggc ggcacgctgg ccgcgctcct cgtcggctcg acgaccggcg
      121 tctacgcggc tgcgcccggc cgggccgtcg tcggccatgt ctacgtcaac aacaactcgg
      181 cgggcgagaa cagcgtcgcc ggcttcgacc ggtacgcgga cggcacgctc accgcgatcg
      241 ccggctcgcc attcccggcc ggcggcgccg ggacgggcag cgtgctgggc tcggccgggg
      301 cgatccagct ctcgtccgac ggacgcttcg tgctggccgt cgacgccggg agcaacgaga
      361 tctcggtgct tcgcgtccgg catgacggat cgctcgacct cgtcgagacc gagggctcga
      421 acggcgccac gccggtcagc attgccgtga gcggcgacct cgtctacgtc gccaacctcg
      481 gcgcgggcgc gagcaactac acgggcttca cgctcaacgc cggcggccac ctccggccga
      541 tcggcgactc gacctacgcc ctgcccgaca acgcgctccc cggccacgtc ctgttcagcg
      601 gcgacggccg gcatctcgtc ggaactcgcg tcggtcccaa cgccgggccg tcgttcatcg
      661 acagcttcag cgtcggcacc gacggccgcc tgacgcccgc accgggctcg ccgttcgcgg
      721 cccagcggat cgggccgttc gggagcgcct tccggccgac caatcctgac cagctgttcg
      781 tctcgaacgc gcacgacggc gccctcgccg gcagcgtctc ggcctatgac gtcgccggcg
      841 acggcacgct gacggcgatc ggcaactcgc cgttcgccga caaccagacc gccccgtgct
      901 gggtcgagat cagccatgac ggcaacttcc tgttcgcgat caacaccggc agcggctcga
      961 tctcgagcta tggcatcgcg gccgacgggg ggctgagcct gctcggcagc gtgcccttca
     1021 acgcggcgac cggactccgg ccgttcgacg cacggctcga tccgaccggc gacttcctgt
     1081 acgtcgtcga tgccggtgcc gccaaggtca gtgcgttcgc cgtcgacggc gggacgctga
     1141 ccgagctccc gtcctcgccc atcgcgatcc ccggcggggt tgcgccgttc ggaatcgtgg
     1201 tcgactgacc ctccgcgacg tccggcactt ggaccgcggg ccatcggccc gcggtccaag
     1261 tctgttcctt cgtcgtgcgc gtcgtgggtc ggggcgacta cgctggcgcc gtcgacccgc
     1321 cggacccgat cacgggaccg gcgtcggccc gcagggagcg caccggtgcc gcaatccgac
     1381 ttcccgctcg acgaactgcg ccggtacagc ccgaccattg ccgtcccggc cgacctggac
     1441 cggttctggg ccgacacgct ggccgacgcg cgccgccacc cgctggccgc gacgttcgag
     1501 ccgatcgaca acggactgcg cgtcatctcc tcgttcgacg tgaccttcgc cggcttcggc
     1561 ggctcgccga tccgggcctg gctccatctg ccggccgatc gtccgggc
//
LOCUS       DATDDI010000469         3298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_280726, whole genome shotgun sequence.
ACCESSION   DATDDI010000469 DATDDI010000000
VERSION     DATDDI010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280726"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VIU37_06700"
     CDS             complement(<1..806)
                     /locus_tag="VIU37_06700"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HEY6013675.1"
                     /translation="MTDGRPGDGASHARAPADGPWSERELVVLAALAETFVAGDGANR
                     ARLASEALTAVTDPAQVRQLRLALRLMDSTAANLLLSGRPRSFRSMPAAEREPYLLGW
                     AGSRLGTRRSAFAAFRKLLTFLAYADPGVERPNPRLTRLGYRPDDPPVTGDLTAIRPV
                     DLARAAAGRPAGEAVVLEADAVIVGAGAGGGVIAAALAEAGRSVVVLEQGPFVDEAAM
                     PRDELGAYDRLYLDHGLLTTWDGSVTMLAGTGVGGGTLVNWTTCIPATASV"
     gene            complement(803..2011)
                     /locus_tag="VIU37_06705"
     CDS             complement(803..2011)
                     /locus_tag="VIU37_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6013676.1"
                     /translation="MVDFALTDENRLVQQAARAFAEAEILPYIREWDERGEVHRELFA
                     KMGEQGFLGAPIPEAYGGSGMDYTSFAILCEELERADTAFRVVQSVHVGLNSLALLQW
                     GTEEQRQRWLVPQARGERLATFALTEPGVGTDAGNLATTARRDGDVYRLNGQKLWISL
                     ADIADHFLVFASVDRSRKHRGVTAFMLERGMPGLTTGSLHGKLGIRAGNTGLINLDDV
                     PVPVEHRIGEEGEGFLIAMSAIDQGRFTVAAGAVGLAQACLDASIRYAHERQTFGQEI
                     GEHQLVKQMIARMAAGTETGRLLVWRAAWLKNQGLRNTRETSLAKWHATEHAVQSALD
                     AIQIHGANGYSNEFPVERYLRNSKAAVIYEGTSQLHTLIQADYAMGYREDRPLRCEPW
                     PAQGWQRPGS"
     gene            2111..>3298
                     /locus_tag="VIU37_06710"
     CDS             2111..>3298
                     /locus_tag="VIU37_06710"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEY6013677.1"
                     /translation="MSTDTILDPATPPAASLTPVLGRYYERTWSHGVGHRLYDTAGKA
                     YLDFANGIAVTALGHAHPRVTAAIHAQVDRLIGPVSAMGFAEPVSRLAAALDATFPDP
                     LDSVMFLNSGSETIEAALKLARRVTGRPGIIAFRHGFHGRTFGAMSVTSSSLNYRAGY
                     EPVLPGVYLTDFPEAYRDFGGDEARATEAALASLHRLTTTEIPPSSVAAMLIEPIQGE
                     GGYTPAPAEFLRELRAFCDRHGILLIADEVQTGFGRTGQMWAFEHSGIVPDVVCMAKA
                     IANGLPLSAVISSRELQERWGRGAHGSTYGGNPVACAAGLAVLETIQEEGLVANAAVR
                     GAELMTGLAAIAAEDDRIGDIRGRGAHGSTYGGNPVACAAGLAVLETIQEEGLVANAA
                     IRGG"
BASE COUNT          444 a         1213 c         1177 g          464 t
ORIGIN      
        1 accgacgccg tggcggggat gcaggtcgtc cagttcacca gcgtgccgcc gccgacgccg
       61 gtaccggcca gcatggtgac cgacccgtcc caggtggtca ggaggccgtg atcgagatag
      121 aggcggtcgt acgcgccgag ctcgtcgcgg ggcatggccg cctcgtcgac gaacggtccc
      181 tgttcgagga ccacgaccga acggcccgcc tccgcgagcg cggcggcgat gaccccgccg
      241 cccgcgccgg caccgacgat caccgcgtcg gcctcgagca cgaccgcttc gccggccggc
      301 cgccccgccg cggcccgggc gaggtcgacc ggccggatcg ccgtcaggtc gccggtcacc
      361 ggcgggtcgt ccgggcgata gccgagacgc gtcagccgcg ggttcggtcg ctccaccccg
      421 ggatcggcat aggccaggaa cgtcaggagc ttgcgaaacg ccgcgaacgc cgagcgtcgc
      481 gtcccgagac gggaaccggc ccaaccgagg aggtacggct cgcgctcggc agccggcatc
      541 gaccggaagg atcgtgggcg gccggagagg agcaggttgg ccgccgtcga atccatcagc
      601 cgcagggcga gcctgagctg gcgcacctgc gccgggtcgg ttacggcggt cagggcctcg
      661 ctcgccagcc gggcccggtt cgccccgtca ccggcgacga aggtctcggc cagggccgcc
      721 aggacgacca gctcgcgctc cgaccacggg ccgtccgcgg gcgcgcgggc gtgtgacgcc
      781 ccatcgcccg gccggccgtc cgtcacgaac caggtcgctg ccagccctgc gccggccagg
      841 gctcgcagcg cagcgggcga tcctcccggt agcccatcgc gtaatcggcc tggatcagcg
      901 tgtggagctg gctcgtgccc tcgtagatca cggcggcctt ggagttccgc aggtagcgct
      961 cgaccgggaa ctcgttggag tagccgttgg cgccgtggat ctggatcgcg tcgagcgcgc
     1021 tctggaccgc gtgctcggtg gcgtgccact tggccaggct cgtctcgcgg gtgttgcgca
     1081 ggccctggtt cttgagccag gccgcgcgcc agacgaggag ccggccggtc tcggtccccg
     1141 cggccatccg ggcgatcatc tgcttgacga gctggtgttc cccgatctcc tggccgaagg
     1201 tctgccgctc gtgcgcgtac ctgatgctgg cgtccaggca ggcctgggcg aggccgaccg
     1261 cgcccgcggc caccgtgaag cggccctggt cgatggcgct cattgcgatc aggaagccct
     1321 cgccctcctc cccgatccgg tgctcgaccg ggaccgggac gtcgtcgagg ttgatcagcc
     1381 cggtgttccc ggcccggatc ccgagcttgc cgtggagcga gcccgtggtg aggccgggca
     1441 tcccgcgctc cagcatgaag gccgtgacgc ccctgtgctt cctggagcgg tcgaccgagg
     1501 cgaagaccag gaagtggtcg gcgatgtccg ccagcgagat ccacagcttc tggccgttga
     1561 gccggtagac gtcaccgtcg cggcgggccg tcgtggcgag gttgccggcg tccgtgccca
     1621 ccccgggctc ggtcagggcg aaggtcgcca gccgctcgcc ccgcgcctgc ggcaccagcc
     1681 agcgctgccg ctgctcctcc gtcccccact gcaggagcgc cagcgagttg aggccgacgt
     1741 ggacgctctg gacgacgcgg aacgcggtgt cggcccgttc gagctcctcg cacaggatcg
     1801 cgaagctcgt gtagtccatg cccgagccgc cgtacgcctc cgggatcggg gcgccgagga
     1861 acccctgttc gcccatcttc gcaaagagct cccggtggac ctcgccgcgc tcgtcccact
     1921 cgcggatgta cggcaggatc tcggcctcgg cgaaggcgcg cgccgcctgc tggacgagcc
     1981 ggttctcgtc ggtcagggcg aagtcgacca tgtgctgagc gtagcagggc ggcaggccgg
     2041 acggcccttc ccggcgacgc tcgggcggcc cgtatactcg gccaaccgca cctgctggag
     2101 cccgcaccac atgtcgaccg acaccattct cgatcctgcc acgcccccgg ccgccagcct
     2161 gacgcccgtg ctcggccgct actacgagcg cacctggagc cacggcgtgg gccatcggct
     2221 gtacgacacc gccggtaagg cctacctgga cttcgccaac gggatcgccg tcactgcgct
     2281 cgggcatgcc cacccccggg tgacggcggc catccacgcc caggtcgacc ggttgatcgg
     2341 cccggtgtcg gcgatgggct tcgccgagcc ggtctccagg ctggcggccg cattggacgc
     2401 gaccttcccg gatccgctcg actcggtgat gttcctcaac tccggatcgg agacgatcga
     2461 ggcggccctc aagctcgccc gtcgcgtgac cggacggccc gggatcatcg ccttccggca
     2521 cggcttccac ggccggacct tcggggcgat gtcggtcacg agctcgtcgc tcaactaccg
     2581 tgccggctac gagcccgtcc tgcccggcgt ctacctgacc gacttcccgg aggcctaccg
     2641 cgacttcggc ggcgacgagg ccagggccac cgaggcggcg ctcgcctcgc tccaccggct
     2701 cacgacgacc gagatcccgc cgtcgtcggt cgcggccatg ctgatcgagc cgatccaggg
     2761 cgaagggggc tatacgcccg cccccgccga gttcctgcgc gagctgcggg cgttctgcga
     2821 ccgccacggg atcctcctga tcgccgacga ggtccagacc gggttcgggc ggacggggca
     2881 gatgtgggcc ttcgagcact ccgggatcgt cccggacgtg gtgtgcatgg ccaaggcgat
     2941 cgccaacggc ctgccgctgt cggcggtcat ctcgagccgc gagctccagg agcgctgggg
     3001 tcgtggcgcg catggctcca cctacggcgg caacccggtc gcctgcgccg ccgggctggc
     3061 cgtgctcgaa acgatccagg aggagggcct ggtcgcgaac gccgcggtcc gaggtgcgga
     3121 gctgatgacc ggactcgcgg ccatcgccgc cgaggacgac cggatcggcg acatccgggg
     3181 acgcggcgcc cacgggtcca cctatggcgg caaccccgtg gcctgtgccg ctgggctggc
     3241 cgtgctcgag acgatccagg aggaagggct cgtggccaac gccgcgatcc gcgggggc
//
LOCUS       DATDDI010000470         3645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_530339, whole genome shotgun sequence.
ACCESSION   DATDDI010000470 DATDDI010000000
VERSION     DATDDI010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530339"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..809)
                     /locus_tag="VIU37_06715"
     CDS             complement(<1..809)
                     /locus_tag="VIU37_06715"
                     /inference="COORDINATES: protein motif:HMM:NF014759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HEY6013678.1"
                     /translation="MEIHLVDATYELFRAHFAPRPPVLGRDGIVLSGVSGLAEQLLYL
                     LREEGATHVGCATDRVIESFRNDLFAGYKSSAGMPPELLAQFPIAEAAVEALGIALWP
                     MVEFEADDAIAAAAVRFAEDERVDRILVCTPDKDMAQLVRDARIVLWDRRRGLVYDDA
                     GVRAKWGVAPTSIPDYLAVVGDSSDGYPGLPGWGAKSAAAVLLRYGHLEDVPAHASGW
                     EVPGVGGTRAISLAASLREHWAEAMLYRDLARLRTADDGVRIRQHDPDELR"
     gene            complement(818..1357)
                     /locus_tag="VIU37_06720"
     CDS             complement(818..1357)
                     /locus_tag="VIU37_06720"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6013679.1"
                     /translation="MRRLLRAVLAGCILAWIADRILAGRADGAPPPPVNTSVRIHAPV
                     EAVWDVLADIEGQPRWMRDLKAVRLEDRGTVGVGTRAEGDVRIFGMRALDPITITAFE
                     PPRRFAIRHDGRFSGAGDIRLDPDPDGTGTIVRWSETLVPPALPHVASWLLAPILRHV
                     FQADLDRLRELVETGATAD"
     gene            complement(1357..1959)
                     /locus_tag="VIU37_06725"
     CDS             complement(1357..1959)
                     /locus_tag="VIU37_06725"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEY6013680.1"
                     /translation="MQRYDRRTALIVVDVQNDFADPAGGLSVAGGDRIIGAVKREIGR
                     ARDAGALVVATQDWHPEHTPHFARDGGIWPVHCVAGTWGAELHPDLALPDDSPRVRKG
                     ANGEDGYSGFTMRDPLTDETIPTELAGLLADGGVESVVVVGLATDYCVRATALDALRL
                     GFRTTIAADAIAAVDLQPGDGDRALAEVQAAGGILEPARS"
     gene            complement(2000..2776)
                     /locus_tag="VIU37_06730"
     CDS             complement(2000..2776)
                     /locus_tag="VIU37_06730"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013681.1"
                     /translation="MTSNKEVTVSTQPLVLVADDEPRITKLVSIALGEEGFRVVTATS
                     GEEALAKAEEVRPDIVLLDIVMPDLDGIEVMRQLRERRPVAVILLTAKGSTADKAKGL
                     DLGADDYIAKPFHPDELAARVRAVLRRSSGAQPGSGILKFDDVEIDLERRMVTRGGEL
                     VQLSRTEWLLLQHLAANAGKVVLHTELLTKVWGPEYRDDLQYLRVWVSRVRRKLGSEP
                     GEPGRIKTFQGIGYLLDVEPPSPVETTPAEPVDERSALIG"
     gene            complement(2860..3066)
                     /locus_tag="VIU37_06735"
     CDS             complement(2860..3066)
                     /locus_tag="VIU37_06735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013682.1"
                     /translation="MTERRATVSQVTPGFGLLAGIALAAILLLGAWLIVAGGLGRPSI
                     RVNDHTNDAVPTVHLRAPARAVVA"
     gene            complement(3063..3272)
                     /locus_tag="VIU37_06740"
     CDS             complement(3063..3272)
                     /locus_tag="VIU37_06740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013683.1"
                     /translation="MTDRETVVVTDRGSSTGLIGGIVLVILLLAGIWFFVLGGNGGGS
                     TVTNNNTNGGNNPAPSLDVSSPAAS"
BASE COUNT          509 a         1251 c         1361 g          524 t
ORIGIN      
        1 cagcggagct cgtcggggtc gtgctggcgg atccggacac cgtcgtcggc ggtcctgagc
       61 cgggccaggt cgcgatagag catcgcctcg gcccagtgct cgcgcagcga ggcggccagc
      121 gagatcgcgc gcgtgccgcc gacgccgggg acctcccagc cggaggcgtg cgccggcacg
      181 tcctcgaggt ggccgtagcg caggagcacg gcggccgccg atttcgcgcc ccagcccggg
      241 agcccgggat agccgtccga cgaatcgccg acgaccgcca ggtagtcggg gatcgaggtg
      301 ggcgccacgc cccacttcgc ccggactccg gcgtcgtcgt agaccagccc ccggcgacgg
      361 tcccagagca cgatccgggc gtcgcggacg agctgggcca tgtccttgtc gggggtgcag
      421 acgaggatcc ggtcgacccg ctcgtcctcg gcgaagcgga cggcggccgc ggcgatcgcg
      481 tcgtcggcct cgaactcgac catcggccat agggcgatcc cgagcgcctc gaccgcggcc
      541 tccgcgatgg ggaactgggc gagcaattcg ggcggcatgc cggccgagga cttgtagccc
      601 gcgaacaggt cgttgcggaa cgactcgatc acgcggtccg tggcgcagcc gacgtgggtg
      661 gcaccctcct cgcggagcag gtaaaggagt tgttcggcga gtcccgacac gcccgacagg
      721 acgatcccgt cccggccgag caccggcggc cggggcgcga aatgcgcccg gaacagctcg
      781 taggtggcgt cgacgaggtg gatctccatg gccccgctca gtccgccgtc gcgccggtct
      841 cgacgagctc ccggaggcgg tcgaggtcgg cctggaagac gtggcgcagg attggcgcga
      901 ggagccacga ggccacgtgc ggcagggccg gcggcacgag ggtctcggac caccggacga
      961 tcgtgccggt gccgtcgggg tcgggatcga gccggatgtc gcccgccccg ctgaaccggc
     1021 cgtcgtgccg gatggcgaac cgccgcggcg gctcgaacgc ggtgatcgtg atcgggtcga
     1081 gggcccgcat gccgaagatg cggacgtcgc cctccgcccg ggtcccgacg ccgaccgttc
     1141 cccggtcctc gagtcgcacg gccttcaggt cccgcatcca gcgaggctgg ccctcgatgt
     1201 cggcgaggac gtcccagacc gcctcgaccg gcgcgtggat gcgaacggac gtgttcacgg
     1261 gcggtggcgg tgccccgtcc gcccggccgg ccaggatccg gtcggcgatc caggcgagga
     1321 tgcaaccggc gagcacggcg cgcaggagtc ggcgcatcag ctgcgggccg gttcgaggat
     1381 cccacccgcc gcctgcacct cggcgagcgc ccggtcgccg tcgccgggct ggaggtcgac
     1441 ggcggcgatg gcgtcggcgg cgatggtcgt ccggaatccg agccggaggg cgtcgagcgc
     1501 ggtggccctg acgcagtagt cggtcgcgag gccgacgacg acgaccgatt cgacgccgcc
     1561 gtccgcgagc agccccgcga gctcggtcgg gatcgtctcg tcggtcagcg ggtcgcgcat
     1621 cgtgaagccc gaatagccgt cctccccgtt cgcgcctttg cggacgcgtg gcgagtcgtc
     1681 gggcagcgcg aggtcggggt ggagctccgc gccccaggtt ccggcgacgc aatggaccgg
     1741 ccagatgccg ccgtcgcggg cgaagtgcgg cgtgtgctcg ggatgccagt cctgcgtggc
     1801 cacgaccagg gcgcccgcgt cccgggcccg gccgatctcg cgcttgaccg ccccgatgat
     1861 ccgatcgccg ccggcgaccg acaggccgcc ggccggatcg gcaaagtcgt tctggacgtc
     1921 gacgacgatg agtgcggtcc gccggtcgta acgctgcacg tcgcgagcgt acgccctggc
     1981 gggccggccg gtcgggttgc tagccgatca gcgcggagcg ctcgtccacg ggttcggcgg
     2041 gtgtcgtctc gacgggcgag ggcggctcca cgtcgaggag atagccgatg ccctggaagg
     2101 tcttgatccg acccggctcg cccggctccg aacccagctt ccggcgaacg cgagacaccc
     2161 agacccgcag gtactggagg tcgtcgcggt actccgggcc ccacaccttg gtgagcagct
     2221 cggtgtggag gaccaccttg ccggcgttgg cggcgaggtg ttggaggagc agccactcgg
     2281 tccgcgacag ctggacgagc tcgccgccac gggtgaccat ccggcgttcg aggtcgatct
     2341 cgacgtcgtc gaacttgagg atgccggacc cgggctgcgc acccgaggac cggcgcagga
     2401 cggcgcggac gcgggccgcg agctcgtccg ggtggaacgg cttggcgatg tagtcgtcgg
     2461 cgccgaggtc caggcccttg gccttgtccg cggtcgaccc cttcgcggtc agcaggatca
     2521 ccgccacggg acgccgttcg cgaagctggc gcatgacctc gatgccgtcg aggtccggca
     2581 tgacgatgtc cagcaggacg atgtccggcc ggacctcctc ggccttggcc agggcctcct
     2641 caccgctcgt cgcggtgacc acgcggaacc cttcctcgcc gagtgcgatg gacacgagct
     2701 tcgtgatgcg gggctcgtcg tcggcgacga gcacgagcgg ctgggtgctc accgtcacct
     2761 ccttgttgga tgtcatggtg ctccacgcag cgatcgccgt catgtgaacg gctgccggtg
     2821 ggctggacag gcggttcgaa tgtggatgct cggtggccgt cacgcgacga ccgctcgggc
     2881 gggcgcccgc aggtggacgg tcggcaccgc gtcgttcgta tggtcgttga cgcggatcga
     2941 ggggcggccg aggccgccgg ccacgatgag ccacgcgccg agcagcagga tcgccgccag
     3001 cgcgatgccg gcgagcaggc cgaagcccgg cgtgacctgg ctgacggtcg cgcggcgctc
     3061 ggtcacgagg ccgccggtga cgagacgtcg aggctgggtg ccgggttgtt cccgccgttg
     3121 gtgttgttgt tggtgacggt gctgccgccg ccattgccgc cgagcacgaa gaaccagatg
     3181 ccggcgagca ggaggatgac cagcacgatt ccaccgatca gtccggtgct ggatccgcgg
     3241 tcggtaacga ccaccgtttc gcggtcggtc atgggggtct gtcctttctc agccacttgg
     3301 gccgtgggtg gacgccagca tgggtgccgc ggcctcccgc gcgtggtggc tcggactgca
     3361 atgtctgttg cagtcgcatt acacgggtcg cgccgctgcg ccggcggacg cggggcatgg
     3421 gtccaccgcg accgactcgc aatgtcccgt tccgggcgag atgggctacc ctttggaccc
     3481 catgtacttc gacgaattca agcaccagct cccggacatc gatccctccg agaccgagga
     3541 ctggctcgcg tcactcgacc aggtggtcgc ccaggagggc gagagccggg cccgcttcct
     3601 gatctacaag ctcctcaagc gagcacgcca gctccagatc gggct
//
LOCUS       DATDDI010000471         2895 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_30992, whole genome shotgun sequence.
ACCESSION   DATDDI010000471 DATDDI010000000
VERSION     DATDDI010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30992"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VIU37_06745"
     CDS             <1..299
                     /locus_tag="VIU37_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016289947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013684.1"
                     /translation="ELKLLILDQPTRGLDVGSIEFVHRQVIAKRDAGTAVLLVSAELD
                     EVLELSDRIGVMYGGKIVAIVDGPTADKNEVGLLMATGGERDVTTETHVMGQTA"
     gene            296..1450
                     /locus_tag="VIU37_06750"
     CDS             296..1450
                     /locus_tag="VIU37_06750"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013685.1"
                     /translation="MTAQPSEARRPKRSTAARIWMVTAVPVTVVVLAVLLGAAIVLVS
                     ELLVPGKAFDWGLPLVAYGALIEGAFGSSDAVVSTLVNSAPLVFGGLAVGFGFKAGLF
                     NIGAQGQFLVGALGAVIVGVWLADAPAIVAMPAAALAGFVAGGLWGFVPGFLKAVSGA
                     HEVVSTIMMNYIAVQLLAALVSGPLKVPRSPSPVTFDVGNAAFPILLGRNGHLGILLA
                     LLAAGFVWWLLFRTTWGFEVRSVGANPDASRYAGMRPKLITMATMTFSGALAGLAGTS
                     VLLGVTHTMTSSFGTTVGFDSIAVALLARSHPLATVLAALLFGGMRAGAGLMQIRAQI
                     PVELVDVLQAVILLFLVASPVLRRVLHAVTPAGVPDVEAPMPDMTPGALA"
     gene            1450..2535
                     /locus_tag="VIU37_06755"
     CDS             1450..2535
                     /locus_tag="VIU37_06755"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013686.1"
                     /translation="MDITALADGLYGIPLLGIVFQIVGFLVDVIPSNAPNIMNQSTPL
                     ALAALCGVLCERSGVVNIGIEGTMLAAAFTAWVVGVAVNPMFGSPAPGPVFGLTIPLV
                     ICLVAAVLVAVLISTLHAWLSISLRADQIISGTIINIAAFGVTGYLDQLISKSSPAGA
                     GSFAAFTPPTELTDLPVVGWLIAMFLNQGPIAMSTIVIIIGGQIWLFRSRWGLRTRAV
                     GEHPRAAETVGIDVIRLRYRNVMLGGVFAGLGGAWLSIEATNSFQIGMTTGRGFIALA
                     AMIMGRWTPIGAFGSALLFALFLQISQLIKIAPPAGDLGTIMSSVPAQLWDALPYLLT
                     IVILAGVVGRSIPPAADGQPYEREAAA"
     gene            2540..>2895
                     /locus_tag="VIU37_06760"
     CDS             2540..>2895
                     /locus_tag="VIU37_06760"
                     /inference="COORDINATES: protein motif:HMM:NF013335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEY6013687.1"
                     /translation="MTATDAERAAALAALPGAPPPGTSRPVILDCDPGHDDALAILLA
                     CASPELDVLAVTTVGGNSGLANTTRNALRVLTLLGRTDVPVAAGADRPLLREPLVQPD
                     FHGESGLDGADLPEAG"
BASE COUNT          356 a         1059 c         1007 g          473 t
ORIGIN      
        1 gggagctcaa gctgctcatc ctcgaccagc cgacccgcgg cctcgacgtc ggcagcatcg
       61 agttcgtcca tcgccaggtc atcgccaagc gcgatgcggg aacggcggtc ctgctggtgt
      121 cggccgagct cgacgaggtg ctcgagctgt cggaccggat cggcgtcatg tacggcggga
      181 agatcgtcgc catcgtcgac gggcccaccg cggacaagaa cgaggtgggg ctgctgatgg
      241 ccaccggcgg agagcgggac gtcacgacgg agacccacgt catggggcag accgcatgac
      301 cgcccagccg tccgaggccc gccgcccgaa gcgcagcacg gctgcccgga tctggatggt
      361 cacggcggtg cccgtcacgg tcgtcgtgct ggccgtgctg cttggcgccg cgatcgtcct
      421 cgtctccgag ctgctcgtgc cgggcaaggc gttcgactgg ggcctgccgc tcgtcgccta
      481 cggcgccctg atcgaaggcg ccttcgggag ctccgacgcg gtcgtgtcga cgctggtcaa
      541 cagcgcgccg ctcgtgttcg gcggcctggc ggtcgggttc ggcttcaagg ccggcctgtt
      601 caacatcggg gcccagggcc agttcctggt cggggcactc ggcgcggtca tcgttggcgt
      661 ctggctggcc gacgcgccgg ccatcgtcgc gatgcccgcg gcggcgctcg ccgggttcgt
      721 cgcgggtggc ctgtgggggt tcgtgccggg cttcctcaag gcggtctcgg gagcccacga
      781 ggtcgtcagc acgatcatga tgaattacat cgcggtccag ctcctggcgg cgctggtgag
      841 cggtccgctg aaggtgccac gctcgccgtc gccggtcacc ttcgacgtcg gcaacgcggc
      901 cttccccatc ctgctcgggc gaaacggcca cctcggcatc ctcctggcgc tcctggcggc
      961 gggcttcgtc tggtggctcc tgttccggac gacgtggggc ttcgaggtcc gctcggtggg
     1021 cgccaacccc gacgcgtcgc gctatgcggg catgcgcccg aagctgatca cgatggccac
     1081 catgacgttc agcggggcgc tcgccggact cgccggcacg agcgtcctgc tcggcgtcac
     1141 gcacacgatg acctcgagct tcgggacgac cgtcggcttt gactcgatcg ccgtggcgct
     1201 gctcgcccga tcgcacccgc tcgcgaccgt gctggccgcg ctgctcttcg gcgggatgcg
     1261 ggccggcgcc ggcctgatgc agatccgggc ccagatcccg gtcgagctgg tcgacgtcct
     1321 ccaggccgtg atcctgctgt tcctcgtcgc gagcccggtg ctgcgacggg tcctccacgc
     1381 cgtgacgccg gccggggtgc ccgacgtcga ggcgccgatg cccgacatga cccccggagc
     1441 gctcgcctga tggacatcac cgccctcgcc gacggcctgt acggcatccc gctgctcggg
     1501 atcgtgttcc agatcgtcgg cttcctcgtc gacgtgatcc cgtcgaacgc cccgaacatc
     1561 atgaaccagt ccacgccgct cgccctcgcc gccctgtgcg gcgtcctgtg cgagcggtcg
     1621 ggcgtcgtca acatcggcat cgaggggacg atgctggcgg ccgcgttcac cgcgtgggtc
     1681 gtcggcgtgg cggtcaaccc gatgttcggg agcccggccc caggcccggt cttcggcctg
     1741 acgatcccgc tcgtgatctg cctggtggcc gcggtcctcg tggcggtgct gatctccacg
     1801 ctccacgcct ggctgtcgat ctcgctccgg gcggaccaga tcatcagcgg caccatcatc
     1861 aacatcgccg cgttcggcgt gaccgggtat ctcgaccagc tgatctcgaa gtcgtcgccc
     1921 gccggcgccg gcagcttcgc ggcgttcacg ccgccgaccg agctgacgga cctgccggtc
     1981 gtcggctggc tgatcgcgat gttcctcaac caggggccca tcgcgatgtc gacgatcgtg
     2041 atcatcatcg gcggccagat ctggctgttc cgttcgcggt ggggcctcag gacgcgggcc
     2101 gtcggcgagc atccacgggc ggccgagacc gtcggcatcg acgtcatccg gctccggtac
     2161 cgcaacgtca tgctcggcgg cgtgttcgcc ggcctcggcg gcgcgtggct gagcatcgag
     2221 gcgaccaact cgttccagat cggcatgacg accggccgcg gcttcatcgc cctcgccgcg
     2281 atgatcatgg gccgctggac accgatcggg gccttcgggt cggcgttgtt gttcgcgctg
     2341 ttcctgcaga tcagccagct gatcaagatc gccccgccgg ccggggacct cggcacgatc
     2401 atgagctccg ttcccgccca gctgtgggac gcgctgccgt acctcctgac gatcgtgatc
     2461 ctggccggtg tggtcggccg gagcatcccg ccggccgcgg acggccagcc gtacgagcgc
     2521 gaagcggcgg cctgaccagg tgaccgcgac cgacgcggag cgggcggccg cgctcgccgc
     2581 gctgccgggc gccccgccac ccggcacctc gcgcccggtg atcctcgact gcgacccggg
     2641 tcacgacgac gcgctggcga tcctgctggc ctgcgcctcg cccgagctcg acgtgctcgc
     2701 ggtcacgacc gtcggcggca actcggggct ggccaatacg acccggaacg ccctccgcgt
     2761 cctgaccctg ctcggccgga ccgacgtccc ggtcgccgcc ggggcggacc gcccgctgct
     2821 gcgcgagccg ctcgtccaac ccgacttcca cggcgagagc ggcctggatg gcgccgacct
     2881 gcccgaagcg ggctt
//
LOCUS       DATDDI010000472         2869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_364044, whole genome shotgun sequence.
ACCESSION   DATDDI010000472 DATDDI010000000
VERSION     DATDDI010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364044"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..972
                     /locus_tag="VIU37_06765"
     CDS             <1..972
                     /locus_tag="VIU37_06765"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013688.1"
                     /translation="PRSEGADMTASSAAVARARAERWRLFLGRTRGFGRRYAGRTDGV
                     IGLAILVLFAGLALAPELFVGPLQTATTATGDPFGAPSAAHLLGTDELGRDMLNLTVH
                     GARISMTIGLLATVITIVVGVLVGIVAGYVGGIVDSILMRISDFFLVLPTFVLALILA
                     PVILEIVGDDAEVLGIRATLMVIIVVIGLTSWATTARIIRSQVLSLKERMFVDRARAI
                     GAGPARIMRRHILPNVVNLIVAQAVLTFAAAVFTETTLSFVGLGDPFAPSWGEILDSA
                     QVSGAPGLGAWWYIAPPAVCVVLVVLAFTLVGNALDDILNPKLSGRR"
     gene            1005..2150
                     /locus_tag="VIU37_06770"
     CDS             1005..2150
                     /locus_tag="VIU37_06770"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013689.1"
                     /translation="MTGPTPVPTEVRGRRQWPLPKQAVPGAPLLEVEDLKTYFQLPSG
                     VVHAVDGVSFKLDYGEALGIAGESGCGKTTTALSLVRLLPSNARIEGGSIRLFGIDLV
                     PKDERQLRRYRWREISIVFQGAMNALNPVQRVRDQIAEPIEQRLSLSRPEALRRAGEL
                     LDLVGIPKKRGAAYPHELSGGMRQRAMIAMALACDPAIIIGDEPTTALDVMVQAQILA
                     LLERLRDELNLSLILITHDLSVIAETCDRVLIMYAGRVAEEGSVREVFARPRHPYTQK
                     LLSAFPNIQADRRTLDVIPGSPPDLRTPPPGCRFHPRCAFAMPVCSEVVPPEVTLADG
                     VRIACHLYPAGTDGVPVTVPPPNAVGPTVPLVPSPAATAPERLEQAG"
     gene            2150..>2869
                     /locus_tag="VIU37_06775"
     CDS             2150..>2869
                     /locus_tag="VIU37_06775"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     ATP-binding protein"
                     /protein_id="HEY6013690.1"
                     /translation="MADDLLRLEGLKVHFPIRGGILDTIRRRPGAVVRAVDGIDLTVR
                     RGEVLGLVGESGSGKTTTGRVIVKLTRQTGGRVIFDGKDVSDLWGVGALRDYRRRVQI
                     IFQDPYETLNPKQSIHDFVAEPIEVNHLASSAADREERVSRALEAAGLRPAADFAFRY
                     PHELSGGQRQRVVIAGALVMDPELIVADEPVSMLDVSIRTELLRLMLDLRAARGLTYV
                     FITHDLSLAWVLADRIAVMYLG"
BASE COUNT          380 a         1060 c          982 g          447 t
ORIGIN      
        1 cctcgatccg agggtgcgga catgaccgcc tccagcgccg ccgtcgcccg cgcccgagcc
       61 gaacgctggc gcctgttcct gggccggacc cgcggctttg gcaggcgcta cgcgggacgg
      121 accgacgggg tgatcgggct cgcgatcctg gtcctgttcg ccggtctcgc actcgcaccc
      181 gagctgttcg tcgggccgct ccagacggcc accaccgcca ccggggaccc gttcggggcg
      241 ccatcggccg cccacctgct gggcaccgac gagctcggtc gcgacatgct caacctgacc
      301 gtccacggcg cgcggatctc gatgacgatc gggctgctcg ccaccgtcat cacgatcgtg
      361 gtcggcgtgc tggtgggcat cgtcgccggc tacgtcggcg gcatcgtcga ttcgatcctc
      421 atgcggatct cggacttctt cctggtgctg ccgacgttcg tcctggcgct gatcctcgcg
      481 ccggtgatcc tcgagatcgt cggcgacgac gccgaggtgc tcgggatccg cgcgaccctg
      541 atggtgatca tcgtggtgat cggcctgacc agctgggcga cgaccgcccg gatcatccgc
      601 tcgcaggtgc tgtcgctcaa ggagcggatg ttcgtcgatc gtgcccgtgc catcggcgcc
      661 ggacccgcgc ggatcatgcg ccgccacatc ctgcccaacg tggtgaacct gatcgtggcc
      721 caggccgtcc tgacgttcgc cgcggccgtc ttcaccgaga cgacgctgtc gttcgtcggg
      781 ctcggcgacc cgttcgcgcc gtcgtggggc gagatcctcg attcggccca ggtgtccggg
      841 gcgcccgggc tcggggcgtg gtggtacatc gcgccgccgg ccgtctgcgt ggtcctggtc
      901 gtgctcgcct tcacgctcgt cgggaacgcc ctggacgaca tcctcaaccc gaagctgagc
      961 ggccggcgat gagcgtcgag cgagcatcgg gcgatcggcc cgcggtgacc ggccccaccc
     1021 ccgtcccgac ggaggtccgc gggcgccgcc agtggccgct gcccaagcag gccgtgccgg
     1081 gcgccccgct gctcgaggtc gaggatctca agacctactt ccagctgccc tcgggcgtcg
     1141 tccacgccgt cgacggggtg agcttcaagc tcgactacgg cgaagcgctc gggatcgcgg
     1201 gcgagtcggg ctgcggcaag accacgacgg ccctgtcgct cgtccggctg ctgccgtcga
     1261 acgccaggat cgagggcggg tcgatcaggc tgttcgggat cgacctcgtc cccaaggacg
     1321 agcgccagct gcggcgctac cgctggcgcg agatcagcat cgtgttccag ggcgcgatga
     1381 acgcgctcaa tcccgtccag cgggtccgcg accagatcgc cgagccgatc gaacagcgcc
     1441 tgtcgctgtc gagacccgag gcgctccggc gggcgggcga gctgctcgac ctggtgggca
     1501 ttcccaagaa gcgcggcgcc gcgtatccgc acgagctgtc cggcggcatg cgccagcggg
     1561 cgatgatcgc gatggccctc gcctgcgacc cggcgatcat catcggcgac gagccgacga
     1621 ccgccctcga cgtcatggtc caggcgcaga tcctcgccct cctcgagcga ttgcgcgacg
     1681 agctgaacct gtcgctgatc ctgatcacgc acgacctgtc cgtgatcgcc gagacctgcg
     1741 accgggtgct gatcatgtat gccggccggg tcgccgagga gggcagcgtt cgagaggtct
     1801 tcgctcgccc gcgtcatccc tacacccaga agctgctgtc ggccttcccg aacatccagg
     1861 ccgaccggcg aacgctcgac gtcatcccgg gctcgccgcc ggacctgcgc acgccaccgc
     1921 ccggctgccg gttccatccc cgatgcgcgt tcgcgatgcc ggtctgctcg gaggtcgtcc
     1981 cacccgaggt cacgctcgcg gacggcgtgc ggatcgcctg ccatctctac cccgccggca
     2041 ccgacggcgt cccggtgacc gtgccgccgc cgaacgccgt gggtccgacc gtgccgctcg
     2101 tgccatcccc ggcggcgacg gcgcccgaac ggctggagca ggccggctga tggccgacga
     2161 cctgctccgc ctcgagggcc tgaaggtcca cttcccgatc cgtggcggga tcctcgacac
     2221 gatccgccgg cggcccggcg ccgtggtccg cgcggtcgac gggatcgacc tcaccgtccg
     2281 ccggggcgag gtcctcgggc tcgtcggcga gtcgggcagc ggcaagacca cgaccggccg
     2341 ggtgatcgtc aagctgaccc gccagacggg cgggcgggtg atcttcgacg ggaaggacgt
     2401 cagcgacctg tggggggtcg gcgcgcttcg cgactaccgg cggcgggtcc agatcatctt
     2461 ccaggacccg tacgagacgc tcaaccccaa gcagtccatc cacgatttcg tggccgagcc
     2521 gatcgaggtc aaccacctcg ccagctccgc ggccgatcga gaggaacggg tgtcgcgcgc
     2581 gctcgaggcg gccgggctcc ggccggcggc cgacttcgcg ttccgctacc cgcacgagct
     2641 ctccggcggc cagcgccagc gggtcgtcat cgccggcgcc ctggtcatgg acccggagct
     2701 gatcgtcgcc gacgagccgg tctcgatgct cgacgtctcg atccgaacgg agctgctccg
     2761 gctgatgctc gacctgcgcg ccgcccgcgg gctcacctac gtgttcatca cccacgacct
     2821 ctccctggcc tgggtgctgg ccgatcggat tgcggtcatg tacctgggc
//
LOCUS       DATDDI010000473         2054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_135282, whole genome shotgun sequence.
ACCESSION   DATDDI010000473 DATDDI010000000
VERSION     DATDDI010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135282"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VIU37_06780"
     CDS             complement(<1..653)
                     /locus_tag="VIU37_06780"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic peptidoglycan transglycosylase"
                     /protein_id="HEY6013691.1"
                     /translation="MEPEPRRTVAAVPRRATGRQPTTQGWIAIIVFAFMAGLGIIGAL
                     ASVGLYVALASDLRPPSELTQYQLPEETVIYDRTGKIELARFGSARRDVVTFDEIPPI
                     LLDATTAIEDKTFWDNAGFDPVAIASAALGSLRGDARGASTITQQLVRARLLDPALVQ
                     DPNRTLERKLKEIIQSVRVTQEFQGVEGKRQIITAYLNQNYYGNQSYGVKAAAESYFG
                     "
     gene            complement(756..1934)
                     /gene="galK"
                     /locus_tag="VIU37_06785"
     CDS             complement(756..1934)
                     /gene="galK"
                     /locus_tag="VIU37_06785"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004335 - galactokinase activity [Evidence
                     IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEY6013692.1"
                     /translation="MSQPFERDELLEALVGIEPAAAARRDAVRVVRAPGRVNLIGEHT
                     DYNEGFVLPAAIDLEIRIAYLPTDDRRVELTRLDTGAREGFGLDRTRARNGSWLDYVA
                     GTAWALTEAGLPLTGLRGVIASTLPTSAGLSSSAAIELASAWAMLDDAAAGVDRFELA
                     RLCQRAENGYVGVMGGLLDQFAESCAVAGSALFLDCRSSEWRPVPLPADVDLVVLHTG
                     STRSLTRSEYNVRRSQCEAAVAALSGSDPSIHSLRDVSPETLADSAERLGPVEFRRAR
                     HIVSENERVGATVAALESGDLDTVGRLFAASHASLRDDYEVSSPELDAMVEIAVGVPG
                     VIAARMTGAGFGGCTVNLVRPDAVGALAEAVRGRYPARTGLTPMILPVRVASGAGRIA
                     "
BASE COUNT          295 a          728 c          750 g          281 t
ORIGIN      
        1 ccgaagtacg actcggccgc cgccttcacg ccgtagctct ggttcccgta gtagttctgg
       61 ttcaggtagg cggtgatgat ctgccgcttg ccttcgacgc cctggaactc ctgcgtgacc
      121 cggaccgact ggatgatctc cttgagcttg cgctcgaggg tccggttggg gtcctggacg
      181 agcgcgggat ccagcagcct tgcccggacc agctgctggg tgatcgtgga cgcgccgcgg
      241 gcgtcgccac ggagcgagcc gagcgccgcg gacgcgatgg ccaccgggtc gaacccggcg
      301 ttgtcccaga aggtcttgtc ctcgatcgcc gtcgtggcgt cgagcaggat cggcgggatc
      361 tcgtcgaacg tgacgacgtc gcgcctggcg ctgccgaagc gggccagctc gatcttgccc
      421 gtccggtcgt agatgaccgt ctcctcgggc agctggtact gggtcagctc gctcggcggc
      481 ctcaggtcgg atgcgagcgc gacgtagagc ccgaccgacg ccagcgcgcc gatgatgccg
      541 agcccggcca tgaacgcgaa gacgatgatc gcgatccagc cctgggtcgt cggctggcgc
      601 ccggtggcgc ggcgcgggac ggcggcgacg gttcggcgag gctctggctc caaggcttgg
      661 cggctccggc tgcggcaacg acgaacgaga gcggcgctaa ggatgcctca agcggccgtc
      721 ggatggcgtt gcagccggcg accggcgcct gacaatcagg cgatccgccc cgcccccgaa
      781 gcgacgcgga cgggcaggat catcggggtc aggcccgttc gtgcggggta tcgcccgcgg
      841 acggcctccg cgagcgcacc gacggcgtcg ggccgcacga ggttgaccgt acacccgccg
      901 aagccggccc cggtcatccg ggcggcgatc accccgggca ccccgaccgc gatctcgacc
      961 atcgcgtcga gctccgggga gctgacctcg tagtcgtcac gcagcgaggc gtggctggcg
     1021 gcgaacagcc ggcccacggt gtcgaggtca ccggattcga gcgcggccac cgtggcgccg
     1081 acccgctcgt tctcgctgac gatgtgcctc gctcgccgga attccaccgg accgagccgc
     1141 tccgccgaat cggcgagggt ctccggcgag acgtcgcgca ggctgtggat cgacgggtcc
     1201 gagcctgaca gggcggcgac ggccgcctcg cactggctcc ggcggacgtt gtactcggag
     1261 cgtgtcaggg accgggtcga cccggtgtgg aggacgacca gatcgacgtc cgccggcagc
     1321 ggcaccggcc gccactcgga cgaccggcag tcgaggaaga gcgccgagcc cgccacggcg
     1381 cacgattcgg cgaactggtc gagcagcccg cccatcaccc cgacgtagcc gttctcggcc
     1441 cgctggcaca accgggcaag ctcgaaccga tcgacgccgg cggccgcgtc gtcgagcatc
     1501 gcccaggccg acgcgagctc gatcgccgcc gacgacgaga ggccggcgct ggtcggcagg
     1561 gtcgacgcga tcacgccgcg gagcccggtg agcggcaggc cggcctcggt cagcgcccag
     1621 gccgtgccgg cgacgtagtc cagccacgac ccgttcctgg cgcgcgtccg gtcgaggccg
     1681 aagccctcac gggcgcccgt atcgaggcgg gtgagctcca cccgccggtc gtcggtcggc
     1741 aggtacgcga tccggatctc gaggtcgatc gcggccggga gcacgaagcc ctcgttgtag
     1801 tcggtgtgct cgccgatcag gttcacccgc cccggtgccc ggaccacgcg gacggcgtca
     1861 cgccgggccg ctgccgcggg ctcgatcccg acgagcgcct cgagcagctc gtcgcgttcg
     1921 aacggctggc tcatggtccg atggtacggc agcccggacc gcgccagcgg ccggcaacgc
     1981 gctggcggag gcgcctcggt accatcgtcg gcaaccggaa ggagaagcga tggcacctcg
     2041 tctcgatgtc gtcg
//
LOCUS       DATDDI010000474         1883 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_384906, whole genome shotgun sequence.
ACCESSION   DATDDI010000474 DATDDI010000000
VERSION     DATDDI010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384906"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1710
                     /gene="priA"
                     /locus_tag="VIU37_06790"
     CDS             <1..1710
                     /gene="priA"
                     /locus_tag="VIU37_06790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEY6013693.1"
                     /translation="QAAVAGLVRRGLAEAEIRERPRRPLAARPVGLRGGRPPSSDLLP
                     AQADAVARSRAAIAGRDARPLLLDGVTGAGKTAIYVEGIAAALEAGRAVLVLVPEIAL
                     ALPLVDRLRADLDARIALLHSGLGDGERADEWRRIRAGDVDIVVGTRLAVTAPLADVG
                     LVIVDEEHDAAYKSDRTPRLQARDCAIQLAALAGAAIVLGSATPAVDSVGRAEAGDFD
                     RVVLDARPVGRPPTVEVVDLREELAAGQRGLLSRSLVAALAGLDTGAGDQAILVLNRR
                     GTASVVLCRDCGHVQACPDCDRPLVYHQAGTTLRCHHCGRATPVATRCPACGSPRIRY
                     LGGGTERLEREVRETMAGLRVGRLDRDVVEHRGAAERVVDAFSEGRLDVLVGTSLVTK
                     GLDIPTVTLVGVVSSDVALNLPDERAAERTYQLLVQAIGRAGRGARPGHAIIQTYQPD
                     HPAIVAAASGRREAFYEAELALRRRFGSPPFGRLVKLTVGLADPRAAEHEATSMAERL
                     RALAYERGAGVTVVGPAPAYIARRADRWRWNVVLRGEDPVALVEGGLDAPWSVDVDPE
                     SLL"
BASE COUNT          223 a          704 c          718 g          238 t
ORIGIN      
        1 caggcggcgg tcgccggcct cgtccggcgc ggactcgcgg aagccgagat ccgcgagcga
       61 cctcgccggc cgctcgccgc ccgcccggtg ggcctgcgag gcggtcggcc gccctcgagc
      121 gacctgctgc cggcccaggc ggacgccgtc gcccggagcc gagccgcgat cgccggacgg
      181 gatgcgcgac ccctgctgct cgacggcgtg acgggcgccg gcaagaccgc gatctatgtc
      241 gaagggatcg ccgccgcgct cgaggccggg cgagcggtcc tggtcctcgt ccccgagatc
      301 gcgctggccc tgcccctggt cgaccggttg cgcgcggacc tggacgcccg gatcgccctg
      361 ctgcactccg gtctgggcga cggcgagcgg gcggacgagt ggcggcggat ccgggcgggc
      421 gacgtggaca tcgtcgtggg cacgcggctg gcggtcacgg cgccgctcgc cgacgtgggc
      481 ctggtgatcg tggacgagga gcacgacgcc gcgtacaaga gcgaccgcac gccgcggctg
      541 caggcgcgcg actgcgcgat ccagctcgcg gccctggccg gagcggccat cgtcctcggc
      601 tccgccacgc cggcggtcga cagcgtcggg cgcgccgaag cgggcgactt cgaccgcgtg
      661 gtcctcgatg cccgacccgt cggacgcccg ccgaccgtgg aggtcgtcga ccttcgcgag
      721 gagctcgcgg ccgggcagcg cggcctcctc tcgcggtcgc tcgtcgcggc cctcgccggg
      781 ctggataccg gcgccggcga ccaggcgatc ctcgtcctca accgacgggg aaccgcgtca
      841 gtggtgctct gccgcgactg cggccacgta caggcctgcc cggactgcga ccgtccgctg
      901 gtctaccacc aggcgggcac gaccctgcgc tgccaccact gcggccgggc gacgccggtc
      961 gccacgcgct gccctgcctg tggctcgccc cggatccgct acctcggcgg gggcaccgag
     1021 cggctcgagc gcgaggtgcg cgagacgatg gccggtctcc gggtcggccg gctcgatcgg
     1081 gacgtcgtgg agcaccgcgg cgcggccgag cgtgtcgtcg acgccttctc ggaggggcgg
     1141 ctcgacgtgc tcgtcgggac gagcctggtg acgaagggcc tggacatccc gacggtcacg
     1201 ctcgtcggcg tcgtctcgtc cgacgtcgcc ctcaacctgc ccgacgagcg cgccgccgaa
     1261 cgcacgtacc agctgctggt ccaggcgatc gggcgggcgg gcaggggggc ccgtccgggg
     1321 cacgccatca tccagaccta ccagccggat caccccgcga tcgtggcggc cgcgagcggt
     1381 cgacgcgagg ccttctacga ggccgagctg gcgctccgac ggcggttcgg ctcgcccccg
     1441 ttcgggcggc tcgtgaagct gacggtcggg ctggcggacc cgcgagcggc ggagcacgag
     1501 gcgacctcga tggccgagcg gctgcgggcc ctggcgtacg agcgtggcgc tggggtgacc
     1561 gtcgtcgggc cggcgcctgc ctacatcgcc cgccgggccg accgctggcg ctggaacgtg
     1621 gtcctgcgtg gcgaggaccc cgtggcgctg gtcgagggcg gcctggacgc cccgtggtcg
     1681 gtcgacgtcg atcccgagtc gctgctctga tcggttcctt cagcagatga ccgtcggacg
     1741 ggatcgtgcg acgatggtcg gccacgcgtg gacgcgcgca gtagaggagt ccggccatga
     1801 ccgaatcgac caccccgccg ccgcccgagg aacccgcggc ggacgagacg ttcacctgga
     1861 cccagccatc ctccgcctcg cac
//
LOCUS       DATDDI010000475         1595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_613730, whole genome shotgun sequence.
ACCESSION   DATDDI010000475 DATDDI010000000
VERSION     DATDDI010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613730"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VIU37_06795"
     CDS             <1..268
                     /locus_tag="VIU37_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013694.1"
                     /translation="YGALDAYSTYQWVAAQVFVQAVKSIGNGPVTRQSLVNALNNLKN
                     FDNGGITPPISYAPGNSHDPLHCLQWIHNTNGQWRTTSGWNCFG"
     gene            286..>1595
                     /locus_tag="VIU37_06800"
     CDS             286..>1595
                     /locus_tag="VIU37_06800"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013695.1"
                     /translation="MLASAAWGLLPSYTVIGITLGGIYALAAIGLVLIYRVSGVLNFA
                     QGAVSMFSAFVAYQISTVMGYPALVGLLAAIVAGGAIGYVIERFTIRPLAGRSALSKV
                     VVTIGWLLVLQTAAGLIWGQTAYHRPVQLVSIHGFTFPGTSVVVGWDEFTTIVVALGL
                     ALGTAAVLRWTTFGTSMRAVADDPDAARLWGINVNRVMSVSWVAGSAMGAIAGVLITP
                     RINFDPISMTIVVIAAFTAALIGRLTSLPWTVVGAMFLGLAETYPRLFSSNAGAGNAV
                     TFALVLLTLAILFRPRTRLVQRISAGREYAPVPAGDNPPVRFMVVASAIGLAVMLPVL
                     LSSYYQSLAAYSLIVGLIVLSLVVLTGLVGQVSFCQYSFAAIGAFTVGSLVGGHGWSF
                     WPALLLGVVFSIAVGVLVGIPALRLSGLFLAILTISVALFFDHFL"
BASE COUNT          195 a          566 c          521 g          313 t
ORIGIN      
        1 atacggcgcg ctcgacgcct acagcaccta ccaatgggtg gcggctcagg tgttcgtgca
       61 ggcggtcaag agcatcggca acggccccgt gacccggcag agcctcgtca acgccctcaa
      121 caacctcaag aacttcgaca acggcggcat caccccgccg atctcctacg cgccggggaa
      181 cagccacgac ccgttgcact gcctccagtg gatccacaac acgaacggcc agtggaggac
      241 gacgtccggc tggaactgct tcggatgagc cccggggaga tgagcatgct cgcgtcagcg
      301 gcttggggtc tgctcccgag ctacaccgtg atcgggatca cgctcggcgg catctacgcc
      361 ctggcggcga tcggcctcgt cctcatctac cgcgtctccg gcgtgctgaa cttcgcgcag
      421 ggcgcggtgt cgatgttcag cgccttcgtg gcctaccaga tctcgaccgt catggggtat
      481 ccggcgctgg tcggcctgct cgccgcgatc gtcgccggcg gcgcgatcgg ctacgtgatc
      541 gagcgcttca cgatccgtcc cctggccggc cgctcggccc tgagcaaggt cgtggtcacg
      601 atcggctggc tgctcgtcct gcagacggcc gcggggttga tctggggcca gacggcgtat
      661 caccggccgg tccagctcgt gtcgatccac ggcttcacgt ttcccggcac ctccgtggtc
      721 gtcggctggg acgagttcac gacgatcgtg gtcgctctgg gcctggcgct cggcaccgcg
      781 gcggtgctcc ggtggacgac cttcggcacg tcgatgcggg cggtcgccga cgaccccgac
      841 gcggcccggc tgtggggaat caacgtgaac cgggtcatgt cggtctcgtg ggtggccggt
      901 tccgccatgg gcgcgatcgc cggggtcctg atcacgccgc ggatcaactt cgacccgatc
      961 tcgatgacga tcgtggtgat cgccgccttc accgccgccc tgatcggccg gctcacgagc
     1021 ctgccgtgga cggtggtcgg tgcgatgttc ctcggcctcg ccgagacgta tccccgcctc
     1081 ttctcgtcga atgccggcgc cggcaatgcc gtgaccttcg cgctcgtcct cctgacgctg
     1141 gcgatcctct tccgcccccg aacgcgcctc gtgcagcgca tctcggccgg gcgggagtac
     1201 gcgccggtcc ccgccggcga caaccctccc gtccgcttca tggtcgtcgc ctcggcgatc
     1261 ggcctcgcgg tcatgctccc ggtgctcctc tcgagctact atcagtctct cgcggcgtac
     1321 tcgctgatcg tcgggctgat cgtgctgtcg ctcgtcgtgt tgacggggct cgtcggtcag
     1381 gtctcgttct gccagtactc gttcgccgcg atcggcgcct tcaccgtcgg gtccctcgtc
     1441 ggaggccacg gctggagctt ctggccggct ctgctgctgg gcgtggtctt ctcgatcgca
     1501 gtcggggtgc tggtcgggat cccggccctg cgcctgtcgg gcctgttcct ggcgatcctg
     1561 acgatctcgg tcgcgttgtt cttcgaccat ttcct
//
LOCUS       DATDDI010000476         1751 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_114177, whole genome shotgun sequence.
ACCESSION   DATDDI010000476 DATDDI010000000
VERSION     DATDDI010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114177"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VIU37_06805"
     CDS             <1..195
                     /locus_tag="VIU37_06805"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY6013696.1"
                     /translation="KVGDTITWTNNDTAGHTVTVDNQSSCDTNTIAGGATGSLTFTVA
                     GTYAFHCKIHSSMKGTITVS"
     gene            complement(258..1268)
                     /locus_tag="VIU37_06810"
     CDS             complement(258..1268)
                     /locus_tag="VIU37_06810"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6013697.1"
                     /translation="MQLDDRFDELVDSLTGFHRTWLIYLGVELGLFGRLRAAGGNGLT
                     AAELAAASGCDPAPIGAWVSAADAHGLLELQGERILLDDETAVVLLDEARPEFLGGQF
                     VHAVIASLDWAGMLEFFRTGQPVRERPDRYRLSIERLTVQDVAVFFQEALAELPQLVA
                     DLSAGGRVLDSHCGGGRWLIAMAQRFPALRLVGLEFEPDSVARARANVSAAGLADRIE
                     IRQGQVDQVAGIGEFSLAYFQYALHQLSEPVGALRAAWAATTPGGTLVVLDWPLPSTL
                     DEFRSRQGELVAGVQLDELYQGTSLATRERIAGWFTEAGIPAPVTIDLASGASLFVAD
                     RP"
     gene            1400..>1751
                     /locus_tag="VIU37_06815"
     CDS             1400..>1751
                     /locus_tag="VIU37_06815"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HEY6013698.1"
                     /translation="MTMDTDGTLLTALADDLDGSFETLVLAHQDRLFSIALRVLGDRH
                     DAEEAAQDAFVRAYRALVGYEPERILELRLRPWLATIVLNLCRSRLARRAARAAIARP
                     ALSLDATELGTLEPR"
BASE COUNT          273 a          644 c          612 g          222 t
ORIGIN      
        1 aaggtcggcg acacgatcac ctggacgaac aacgacaccg ccgggcacac cgtgaccgtc
       61 gacaaccagt cgtcgtgcga cacgaacacc atcgcgggcg gcgcgaccgg cagcctgacc
      121 ttcacggtcg ccggcacgta cgcgttccac tgcaagatcc acagctcgat gaagggcacg
      181 atcacggtca gctgacccgc gcccgggtca accccgactg cggcggcaca ctccgggcag
      241 gacctcgccg ggcccggcta cggacggtcg gcgacgaaca gtgaagcgcc ggaggcgagg
      301 tcgatcgtca ccggggccgg gattccggcc tcggtgaacc aacccgcaat ccgctcgcgg
      361 gtcgccagcg acgtgccctg gtagagctcg tcgagctgga cccccgcgac gagctcgccc
      421 tggcgcgacc ggaactcgtc gagcgtggac ggcagcggcc agtcgagcac gaccagagtc
      481 ccgccggggg tcgtggccgc ccaggccgcc cgcagcgcgc ccaccggctc cgatagctgg
      541 tgcagggcgt actggaagta cgcgaggctg aactcgccga tgcccgctac ttggtcgacc
      601 tggccctgcc ggatctcgat ccggtcggca agcccggccg ccgacacgtt ggctcgggcc
      661 ctcgccaccg aatcgggctc gaactccagc cccacgagcc gcaacgccgg gaaccgctgc
      721 gccatcgcga tcagccaccg gccgccgccg cagtggctgt cgaggacgcg accaccggcc
      781 gacaggtcgg ccacgagctg gggcagctcg gccagcgcct cctggaagaa gaccgcgacg
      841 tcctggaccg tgagtcgctc gatcgacagc cggtagcgat cgggtcgctc gcggaccggc
      901 tgtccggtgc ggaagaactc gagcatgccc gcccagtcga gcgacgcgat cacggcgtgg
      961 acgaactggc ccccgaggaa ctccggacgc gcctcgtcga ggaggacgac ggccgtctcg
     1021 tcgtcgagga ggattcgctc gccctgcagc tcgagcaggc cgtgggcatc cgcggccgac
     1081 acccaggcgc cgatcggcgc ggggtcgcag ccgctcgccg ccgcgagctc ggcggccgtc
     1141 aggccgttcc cgcccgccgc ccggagccgg ccgaagagcc cgagctccac gccgaggtag
     1201 atcagccagg tccggtggaa gccggtcagg ctgtcgacca gttcgtcgaa tcggtcgtcg
     1261 agctgcatcc tcggccgatt gtcgcatggc agccggacac gtcgtctgga ggaaccgcag
     1321 cgttcggcgg cgtccgggcg ggtaccgttg tcggccagcg acccgagcgg caacggttgg
     1381 ccgcgaccct gggttctgga tgacgatgga caccgacggc acgctgctca cggccctggc
     1441 cgacgacctc gacggatcgt tcgagacgct cgtgctggcc caccaggatc ggctcttctc
     1501 gatcgccctg cgggtgctcg gcgatcggca cgatgccgag gaggcggcac aggacgcgtt
     1561 cgtccgcgcg taccgggccc tcgtcggcta cgaaccggag cggatcctag agttgcgtct
     1621 ccggccctgg ctcgccacga tcgtgctcaa cctgtgccgc tcgcgcctcg cgcggcgggc
     1681 ggcacgggcg gcgatcgctc ggccggcgct gtcgctcgac gcgaccgagc tcggcacgct
     1741 cgagccacgc g
//
LOCUS       DATDDI010000477         3107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_509742, whole genome shotgun sequence.
ACCESSION   DATDDI010000477 DATDDI010000000
VERSION     DATDDI010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_509742"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VIU37_06820"
     CDS             <1..315
                     /locus_tag="VIU37_06820"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY6013699.1"
                     /translation="GGSVLRPETLAAMVDDATVTTALKSSVPYGLGVQVVTIDGRQAM
                     GHSGRLLGFRAVMRWLPVEGIAVTVMTNQSRTDPNLLVRELLRSVIGVPPPPCAGCLP
                     PP"
     gene            441..965
                     /locus_tag="VIU37_06825"
     CDS             441..965
                     /locus_tag="VIU37_06825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013700.1"
                     /translation="MAIRVELYTTGGVASGVLARPGTLREALTTDAELRLDQAAWQAI
                     DGADPQAAGTLTFAVDDILFAVADEAPNGPMHAAWHHVLLDAGPYELEGELATLPGFD
                     PGRSLTRPSGEWVLLRDVRLSVAGHPEAGVSTGDHALVNRYGVERIRADLMLGFFFPG
                     AAVDAATSPAAGLA"
     gene            complement(996..2270)
                     /locus_tag="VIU37_06830"
     CDS             complement(996..2270)
                     /locus_tag="VIU37_06830"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6013701.1"
                     /translation="MTFDALGLSADLLQTVAEEGYQAPTPVQREAIPLVLAGRDLLAA
                     AQTGTGKTAAFVLPILDRLRDKANTSFSPARHPVRVLILVPTRELAMQVDQSVRTYGR
                     TVPLRSTVVYGGIPIEPQIKALRAGVEILVATPGRLLDHVGQRTVNLSQVEILVLDEA
                     DRMLDMGFLPDIRRILELLPARRQNLLFSATFSQDIRDLSGSLLRDPATVEVAPRNTA
                     AEAVRQLVYPVDRDRKDALLAHLIRKNDLRQVLVFTRTKLAASRLAARLDREGIDAVA
                     IHSDRSQPERTRALEGFKTGEIRVLVATDVAARGLDIEDLPVVVNFELPWNPQDYIHR
                     IGRTGRAGATGEAISLVCIDETDLLRGVQRMLRQAIPWTVEEGFIPDRDVEPRPLGAR
                     AGHARVGEHHAQRKPVRRRTGTGSGSGGARRV"
     gene            2373..2876
                     /locus_tag="VIU37_06835"
     CDS             2373..2876
                     /locus_tag="VIU37_06835"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA deacylase"
                     /protein_id="HEY6013702.1"
                     /translation="MTATGTRAIDLVRRSGVAHQVHAYEPTARHGRDRDARPSYGREA
                     AMALGIEPGRLFKTLVASVDERLVLAVVPVDRELDPKALAEAVEGRHAELADPVVAER
                     ATGYVVGGISPIGTRRALPVILDVSATGRPTVFVSAGRRGLQVELAPDDLVRLTGAIV
                     ASVARDH"
BASE COUNT          412 a         1120 c         1122 g          453 t
ORIGIN      
        1 ggcggctcgg tgctccgacc cgagacgctc gccgcgatgg tcgacgacgc gaccgtgacg
       61 accgccctga agtcgagcgt gccatacggc ctcggcgtcc aggtcgtgac catcgacggg
      121 cggcaggcca tgggccattc cgggcggttg ctcggcttcc gggccgtgat gcgctggctg
      181 ccggtcgagg ggatcgccgt gacggtcatg accaaccaga gccggaccga cccgaacctc
      241 ctcgtccgcg agctgctgcg gtcggtcatc ggcgtgccgc caccgccctg cgcgggttgc
      301 ctgccgccac cctgatccgg tgcgcccggg aaccacatcc acgggattcc cgtaccagtg
      361 gacgtcgcga acggtacggc cgggtgcttc tcagcggccc cggcccggac cacactgcag
      421 cctcgcccga tgagggtccc atggcgatac gcgtcgagct ctacacgacc gggggcgtgg
      481 ccagcggcgt cctggcccgg ccgggcacgc tccgtgaggc cctgacgacc gacgccgagc
      541 tccggctcga ccaggccgcc tggcaggcca tcgacggtgc cgatccgcag gcggccggga
      601 cgctgacctt cgcggtcgac gacatcctgt tcgccgtcgc cgacgaggcg ccgaacggcc
      661 cgatgcacgc cgcctggcat cacgtcctgc tcgacgccgg accctacgag ctcgaaggcg
      721 agctcgcgac cctgcccggg ttcgacccgg gccgttcgct gactcggccc tcgggcgagt
      781 gggtgctcct gcgagacgtg cggttgtcgg tggccgggca cccggaggcc ggcgtgtcga
      841 ccggcgatca cgccctggtc aatcgctatg gcgtggagcg gatccgggcc gacctgatgc
      901 tcgggttctt cttcccgggc gccgcggtcg atgccgcgac gagtcctgcc gccgggctgg
      961 cctgatccgg ccggtcccgg ccgtgtcgcc cggacctaga cgcgtcgcgc cccgccgctc
     1021 ccgctcccgg ttccggtccg gcgtcgtacc ggcttgcgct gcgcgtgatg ctcgccgacg
     1081 cgcgcgtgac cggcgcgcgc ccccagcggt cgcggctcga cgtcccggtc ggggatgaag
     1141 ccctcctcga ccgtccacgg gatggcctgg cgcagcatcc gctggacccc gcggagcagg
     1201 tcggtctcgt cgatgcagac cagcgagatc gcctcgccgg tcgcgcccgc ccgacccgtc
     1261 cgcccgatcc ggtggatgta gtcctgcggg ttccacggga gctcgaagtt gacgacgacc
     1321 ggcaggtcct cgatgtcgag gccgcgtgcc gcgacgtccg tcgcgacgag cacccggatc
     1381 tcgccggtct tgaagccctc gagcgcgcgc gtccgttcgg gctgcgaccg atccgagtgg
     1441 atggccacgg cgtcgatccc ctcgcggtcg aggcgcgccg cgaggcggct ggcggccagc
     1501 ttggtccggg tgaagaccag gacctggcgc aggtcgttct tgcggatcag gtgcgcgagc
     1561 agcgcgtcct tgcggtcgcg atcgaccgga tagacgagct ggcggacggc ctcggcggcg
     1621 gtattgcgcg gcgccacctc gacggtcgcg ggatcgcgca ggagcgaccc cgagaggtcg
     1681 cggatgtcct gcgagaaggt cgccgagaac agcaggttct ggcggcgcgc cggcaggagc
     1741 tccaggatcc ggcggatgtc cggcaggaat cccatgtcga gcatccggtc cgcctcgtcg
     1801 aggacgagga tctcgacctg gctgagattg acggtccgtt gcccgacgtg gtcgagcagc
     1861 cggccgggcg ttgccacgag gatctccacg cccgctcgca gcgccttgat ctgcggctcg
     1921 atcgggatcc cgccatacac cacggtcgac cgcagcggca cggtccgccc ataggtccga
     1981 acgctctggt cgacctgcat cgccagctcg cgggtcggga ccaggatcag gacgcgaacc
     2041 ggatggcggg cgggcgagaa gctcgtgttc gccttgtcgc gcaaccgatc gaggatcggc
     2101 aggacgaacg ccgcggtctt gccggtgccc gtctgggcgg ccgcgagcag gtcgcggccc
     2161 gcgaggacga gcgggatcgc ttcacgctgg acgggggtcg gggcctggta gccttcctcg
     2221 gcaacggtct gaaggaggtc tgccgagaga ccgagtgcgt cgaacgtcaa ccatcgctcc
     2281 tgcgtcgtcc cgtcgtgggc aaccagccgg ggacgacggt ggcccatggg taaggccgct
     2341 cggagcatag ccgaaatggc taggatcgcc cgatgaccgc caccggcacg cgagccatcg
     2401 atctcgttcg gcggtccggt gtcgcacacc aggtgcatgc gtacgagccg acggcccggc
     2461 acgggcgcga tcgcgatgcc cgcccgtcct acggccggga ggccgccatg gcgctcggga
     2521 tcgaaccggg gcggttgttc aagacgctcg tggccagcgt cgacgagcgc ctcgtcctgg
     2581 ccgtcgtgcc ggtcgaccgc gagctcgatc ccaaggcgct ggcggaggcg gtcgaggggc
     2641 gacacgcgga gctggccgac cccgtcgtgg ccgagcgggc gaccggctac gtggtcggcg
     2701 ggatcagccc gatcggcacg cgccgggcgt tgcccgtcat cctcgacgtc tcggccaccg
     2761 gccggccgac cgtcttcgtg tccgccggcc ggcgcggcct gcaggtcgag ctggcgccgg
     2821 atgatctcgt caggttgact ggggcgatcg tcgcgtccgt cgcccgggac cattgagggg
     2881 tcgacacggt catggggcgg ctggcatact ccggtcgctc ccaggcatcc cgtcaccaga
     2941 caggcaccaa ccgaagaacg ccgcccccac ggcaggtcct gcctcgttcc gggatccgcc
     3001 cactcgtcgg atccggacgt cgacgtcccc tccgacccag gtgatcgatc cccaggtcga
     3061 tccgcctgat cgccgacgca ccggcgtgcg tccctgccgt cggcggc
//
LOCUS       DATDDI010000478         2130 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_73081, whole genome shotgun sequence.
ACCESSION   DATDDI010000478 DATDDI010000000
VERSION     DATDDI010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73081"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..827
                     /locus_tag="VIU37_06840"
     CDS             <1..827
                     /locus_tag="VIU37_06840"
                     /inference="COORDINATES: protein motif:HMM:NF015056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HEY6013703.1"
                     /translation="LLDASGGQLTAESQLADLVALDFSRVDQVNGPIAVEGAEPGDTL
                     QIELLDFQPADWGWTASIPGFGLLADDFPDPVLRITTIPVGGPAEFLPGIWVPVVPFC
                     GEVGVAPATGPRSTIPPDLHGGNMDTRHLTAGATLFLPVFQAGGRLSIGDGHAAQGDG
                     EVCGTAIETPMRATLRLTARPDLHLSGPEFLTAAGPLAETPVGRRYATDGIGPDLAGA
                     ARDAVRRMIDWLGREHGLAAEDAYLLCSVAIDLRISEIVDMPNYVVTAHCPLSIFE"
     gene            complement(850..>2130)
                     /locus_tag="VIU37_06845"
     CDS             complement(850..>2130)
                     /locus_tag="VIU37_06845"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6013704.1"
                     /translation="GMFTYVRNGLGSFFGWLVAWSFALAEPLVMPLLLGGFGFYGAIF
                     LSSYLGIDFGYAWLALAVLCGLAVWWLTYRGVALSTRVGLILGVIEIVIFLLISLLLI
                     ANAKQNTLNVFIPGADGVRPAFQGMIFCLLAFIGFEAAAPLGEESREPRSTIPRAVVW
                     SAILVGLFYVFNYYAATVYFGPDRMVDFYTFNDGDPWGFMAEAVLPGIGGLLVVLAIL
                     NSSLANANAGATAATRSLFAMGRVALLPRWFAAVHPQTRAPVNAVHFQAISAIVIAVV
                     LGVVLANDPYPTPEGAASFGGLNVYVFLGTMLGLIFVFIYIAVNLACIGYFWRQRRNE
                     FNVIKHLLVPVLGVLAMIPAGLAVIGGLTIPFLDIELPPYETALRWTAPIVGAWMVIG
                     IVLYFVLRARNPEALERMGDVYGGEAPAPADRFG"
BASE COUNT          375 a          726 c          751 g          278 t
ORIGIN      
        1 acctgctgga cgcgagcggc ggccagctga ccgccgagtc gcagctcgcg gatctcgtcg
       61 cgctcgactt ctcccgcgtg gaccaggtca atggcccgat cgccgtcgaa ggtgcggagc
      121 cgggcgatac cctgcagatc gagctcctcg acttccagcc ggccgactgg ggctggacgg
      181 cgagcattcc cggtttcggg ttgctggcgg acgacttccc ggatccggtg ctccggatca
      241 cgacgatccc ggttggcgga cccgccgagt tcctgccggg catttgggtc ccggtcgtcc
      301 cgttctgcgg cgaggtcggc gtcgcgccgg ccaccgggcc ccgatcgacg atcccgccgg
      361 acctgcacgg cggcaacatg gacacccgtc acctgacggc cggtgcgacc ctgttcctgc
      421 ccgtgttcca ggcgggcggg cggctgtcga tcggcgacgg ccacgccgcg cagggcgacg
      481 gcgaggtctg cggcacggcg atcgagacac cgatgcgggc gacgctgcgg ctgacggcgc
      541 ggccggacct ccacctgtcc gggcccgagt tcctgacggc ggccgggccg ctggcggaga
      601 cgccggtcgg ccggcgctac gccaccgacg gcatcgggcc cgacctggcc ggggcggcgc
      661 gcgacgcggt ccggcggatg atcgactggc tcggtcgaga gcacggcctc gccgccgaag
      721 acgcctacct gctgtgcagc gtggcgatcg acctgcgcat cagcgagatc gtggacatgc
      781 cgaactacgt ggtcacggcc cactgcccac tgtcgatctt cgagtagggc ccttctcggc
      841 ggacccgtgt cagccgaagc ggtccgccgg ggccggggcc tcgccaccat agacatcgcc
      901 catgcgctcg agcgcctccg ggttcctggc gcggagcacg aagtagagga cgatgccgat
      961 gaccatccag gcgcccacga tcggcgccgt ccagcgtagc gcggtctcgt agggcggaag
     1021 ctcgatatcg aggaacggga tcgtcaggcc gccgatgacc gccagcccgg ccgggatcat
     1081 cgcgagcaca ccgagcaccg gcacgagcag gtgcttgatc acgttgaact cgttccgacg
     1141 ctggcgccag aagtagccga tgcacgccag gttcacggcg atgtagatga agacgaagat
     1201 cagccccagc atggtgccga ggaagacgta gacgttcaga ccgccgaagc tcgcggcgcc
     1261 ctccggggtc gggtacgggt cgttggcgag gaccacgccg aggaccaccg cgatgacgat
     1321 ggcgctgatc gcctggaagt gcaccgcgtt gaccggcgcg cgcgtctgtg gatggacggc
     1381 cgcgaaccag cggggcagca gcgcgacgcg ccccatggcg aacaacgacc gagtcgccgc
     1441 cgtcgcgcca gcattcgcgt tcgccaggga gctgttgagg atggcgagga cgaccagcag
     1501 gccaccgatg ccgggcaaca ccgcttcggc catgaagccc cacgggtcgc cgtcattgaa
     1561 ggtgtagaag tcgaccatgc gatccggccc gaagtagacg gtggcggcgt agtagttgaa
     1621 cacgtagaac agcccgacca ggatcgccga ccagaccacg gcgcgcggga tcgtgctgcg
     1681 cggctccctg ctctcctcgc caagcggcgc ggccgcctcg aagccgatga acgccagcag
     1741 gcagaagatc atcccctgga aggccggccg gacgccgtcg gcaccgggaa tgaacacgtt
     1801 cagcgtgttc tgcttggcat tcgcgatcag gagcagcgag atcagcagga agatcacgat
     1861 ctcgatgacg ccgaggatga ggccgacccg cgtcgagagc gccacgcccc ggtacgtgag
     1921 ccaccagacc gccaggccgc acagcacggc gagcgcgagc cacgcgtagc cgaagtcgat
     1981 tccgaggtac gaggacagga agatcgcccc gtagaagccg aagcccccga ggaggagcgg
     2041 catgaccagg ggctcggcca acgcgaagct ccaggcaacg agccagccga agaacgagcc
     2101 gagtccgttg cggacgtagg tgaacatccc
//
LOCUS       DATDDI010000479         1785 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_634792, whole genome shotgun sequence.
ACCESSION   DATDDI010000479 DATDDI010000000
VERSION     DATDDI010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_634792"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            244..1248
                     /locus_tag="VIU37_06850"
     CDS             244..1248
                     /locus_tag="VIU37_06850"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03557 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY6013705.1"
                     /translation="MAKIGYSCSLEQFHPNDLLEWCVQAEDAGFSAGFMVSEHFHPWT
                     PQQGQSAFAWTFMGALGLRTSLPFGTGVTCPGFRYHPAVVAHAAATLGAMFPGRFWLG
                     LGAGEALNEHIVGGKWPEVGIRSQMMFESIEIIRELFTGEVVRHHGEHFTVESARLYT
                     RPEQPVPIYVATAGPLNAKRTGRLADGMITVGAADAKLNELWGNMEAGAREAGKDPSG
                     MPKILQLHFSWAPTDEEAEQDAIREWPNGGMAFPKQDIRNPEDFAAMSRLVKREHFVN
                     RMLISPDLDRHVENIQHYVDLGFDEIHIHNVGRDQARFIEVFGREVLPRLNLSPAPRA
                     "
     gene            complement(1252..>1785)
                     /locus_tag="VIU37_06855"
     CDS             complement(1252..>1785)
                     /locus_tag="VIU37_06855"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6013706.1"
                     /translation="ATVLRQEPNQGKGAALRAGFAWAIAEGVLAVVTLDGDGQHDPAE
                     LPRFLEAERAQPGELVIGRRDFGRMPLVRRLSNVAGTLLLSAAVGRWIPDNQSGYRLI
                     GRRLMAAMLESHDDGFAFEVEMIAVCQREGWPIAWAPIRTIYGDERSHIRPLRHLREF
                     LAVTARARAISRGAPLR"
BASE COUNT          274 a          629 c          643 g          239 t
ORIGIN      
        1 gcgggaagcg cgacgccggc tacgtggatg tcgcgcagat ccgaggcggc ggcctcgtac
       61 gcgggaccgc ggctcgcggc acggagcagc ctcgcgagat cggcccggcg gggcagcgat
      121 cgggtgcccg cggcgtcagt cgagctcacg aggccgtgcg ggcgggcaca cgaaggggct
      181 ggagacgcgg cgcagccatc gcgtcacgct agcgcatggc agccgctcgc taccatgccc
      241 gtgatggcca agatcggata ttcctgctcg ctcgagcaat tccacccgaa cgacctcctg
      301 gagtggtgcg tccaggccga ggacgcgggg ttctccgccg gcttcatggt ctccgagcac
      361 ttccacccgt ggacgccgca gcagggccag agcgccttcg cctggacgtt catgggtgcc
      421 ctggggctgc gaacgtcgct gccgttcgga acgggcgtga cgtgtccggg attccgatac
      481 caccctgccg tcgtggccca cgcggcggcg acgctcggcg cgatgttccc gggccgcttc
      541 tggctcgggc tgggcgccgg cgaggccctc aacgagcaca tcgtcggcgg caagtggccg
      601 gaggtgggga tccgctcgca gatgatgttc gagtcgatcg agatcatccg cgagctgttc
      661 accggcgagg tcgtgcgaca ccacggcgag cacttcaccg tcgagagcgc ccggctgtac
      721 acgcggccgg agcagccggt cccgatctac gtcgccacgg ccgggccgct gaacgcgaaa
      781 cggaccggcc gcctggccga cgggatgatc acggtcgggg cggccgacgc caagctgaac
      841 gagctgtggg ggaacatgga ggccggggcc cgcgaggccg gcaaggaccc cagcggcatg
      901 ccgaagatcc tgcagctcca cttctcgtgg gcacccaccg acgaggaggc cgagcaggac
      961 gcgatccgcg agtggccgaa cggcggcatg gccttcccga agcaggacat ccggaacccc
     1021 gaggacttcg ccgcgatgtc caggctcgtc aagcgcgagc acttcgtgaa ccggatgctc
     1081 atcagcccgg acctcgaccg ccacgtcgag aacatccagc actacgtcga cctcggcttc
     1141 gacgagatcc acatccacaa cgtcgggcgc gaccaggcgc gcttcatcga ggtcttcggc
     1201 cgcgaggtcc tgccgcggct gaacctcagc ccggcgccgc gcgcctgacc gtcagcggag
     1261 cggggcgccc cggctgatcg cccgggccct cgccgtcacc gcgaggaact cgcgtaggtg
     1321 gcggagcggc cggatgtggc tccgctcgtc gccgtagatc gtccggatcg gcgcccaggc
     1381 gatcggccag ccttcccgct ggcagaccgc gatcatctcg acctcgaagg cgaagccgtc
     1441 gtcgtggctc tcgagcatcg cggccatgag gcgccggccg atgagccggt agccggactg
     1501 gttgtccggg atccagcggc cgacggccgc cgagagaagc agcgtccccg cgacgttcga
     1561 cagtcgccgg acgagcggca tccgcccgaa gtcgcggcgt ccgatgacga gctcgccggg
     1621 ttgggcgcgc tccgcctcca ggaaccgtgg cagctcggca ggatcgtgct ggccgtcgcc
     1681 gtcgagggtg accacggcga ggacgccctc ggcgatcgcc caggcgaagc cggcccgaag
     1741 tgccgcgccc ttgccctggt tcggctcctg gcggaggacc gtcgc
//
LOCUS       DATDDI010000480         1867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_655352, whole genome shotgun sequence.
ACCESSION   DATDDI010000480 DATDDI010000000
VERSION     DATDDI010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_655352"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..562)
                     /locus_tag="VIU37_06860"
     CDS             complement(<1..562)
                     /locus_tag="VIU37_06860"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013707.1"
                     /translation="MESFPAETNGRTPSLADDPALGLSHRAKLEILGAVLLALFLGAL
                     DQTIVGTALPRIVTDLGGNEYYTWVVTIYLLTSTITVPFYGKLSDIYGRKPMMMFGVT
                     IFLIGSALSGLSQNMAMLILFRGIQGIGAGALFPIALAVIGDLYTPAERGRYQGLFGA
                     VFGISFIIGPALGGLLTDNVSWHWIFY"
     gene            complement(562..1179)
                     /locus_tag="VIU37_06865"
     CDS             complement(562..1179)
                     /locus_tag="VIU37_06865"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6013708.1"
                     /translation="MIRFCDIVHVTQTIGATTSAAADPEGSARDLASAIIADFRATMT
                     QLKCASSERLLREGVSMAQVHIMYTVQRHGEMTMSQLADVLNVSDSNATGLVDRLEER
                     GFVVRDRVPEDRRVVVVKPTDAGQRLLREVDALSDEILRSVLGRLDQAQLVGVGQAIA
                     DLREAVDSVVEAGEHRHPASTTSPRSPASLRVADVATHHKEGIDH"
     gene            1221..>1867
                     /locus_tag="VIU37_06870"
     CDS             1221..>1867
                     /locus_tag="VIU37_06870"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6013709.1"
                     /translation="MRFALMIEPQQGLSYGDQVAVAKRAEANGFETLFRSDHYQSFPG
                     PEGRPTTDAWTVLAGLARDTDRIGLGALVSPMTFRHPGNFAKVVTTVDEMSGGRIEVG
                     VGAGWNELEHRQLGLPFPPIGERADLLEDTLAILHGLWGEPDGWSYAGHQVSIEGARF
                     HPKPVDVPGRPRTPIGGARPRILVGGGGTPRSYRLAARYADEFNLNTKSPDHTRSA"
BASE COUNT          307 a          616 c          658 g          286 t
ORIGIN      
        1 cgtagaagat ccagtgccag ctgacgttgt cggtcagcag gccaccgagg gcggggccga
       61 tgatgaacga gatgccgaag accgcgccga agaggccctg gtagcggcct cgttcggccg
      121 gcgtgtacag gtcgccgatg accgcgagcg cgatcgggaa gagcgcgccg gcgccgatgc
      181 cctggatgcc gcggaacagg atcagcatcg ccatgttctg cgacaggccg gacaacgccg
      241 agccgatcag gaagatggtg acgccgaaca tcatcatcgg cttgcggccg tagatgtcgg
      301 acagcttgcc gtagaacggc acggtgatcg tggaggtcag caggtagatg gtcacgaccc
      361 acgtgtagta ctcgttgccg cccagatcgg tgacgatccg gggcagcgcc gtacccacga
      421 tggtctggtc cagggcgccc aggaagagcg cgaggaggac ggcgcccagg atctcgagct
      481 tggctcgatg gctgaggccg agggcggggt cgtcggcgag cgacggggtt cgcccgttcg
      541 tctcagccgg gaacgattcc atcagtgatc aatcccttcc ttgtgatggg tggcgacgtc
      601 tgcgactcgc agactggctg gcgatcgtgg agatgtcgtg gaggccggat ggcgatgttc
      661 tccggcctcg acgacggagt cgaccgcctc gcgtaggtcg gcgatggcct ggccgacgcc
      721 gacaagctgg gcctggtcga gcctgccgag caccgagcgg aggatctcgt cgctgagcgc
      781 gtcgacctca cggagcagcc gctggccggc gtccgtcggc ttgacgacga ccacgcgccg
      841 gtcttccggc acgcggtcgc ggacgacgaa cccgcgctcc tccagccgat cgaccagccc
      901 ggtcgcgttc gaatcggaga cgttcaggac atccgccagc tggctcatgg tcatctcgcc
      961 atgccgctgg accgtgtaca tgatgtggac ctgggccatg ctcaccccct cgcgcaggag
     1021 ccgttcgctc gaggcgcact tgagctgggt catggtcgcg cggaaatcgg cgatgatggc
     1081 gctggcgagg tccctcgccg atccctcggg atccgccgcc gccgatgtcg tggcgcctat
     1141 agtttgtgtc acgtgaacaa tatcgcagaa gcggatcatc ctgtcaatct gaagggtccg
     1201 cctcgcgtgc aggagtcgac atgcggtttg cgctgatgat cgaaccccag cagggcctga
     1261 gctatggcga ccaggtcgcc gtcgcaaagc gagccgaggc caacggcttc gagaccctgt
     1321 tccggtccga tcactaccag agcttcccgg gccccgaagg gcgtccgacc accgacgcct
     1381 ggacggtcct cgccgggctc gcccgcgaca ccgaccggat cggcctcggc gcgctcgtct
     1441 cgccgatgac gttccgccat cccggcaact tcgccaaggt cgtgacgacc gtggacgaga
     1501 tgagcggcgg ccggatcgag gtcggcgtgg gggcgggctg gaacgagctc gagcaccgcc
     1561 agctgggcct gccgttcccg ccgatcgggg aacgcgcgga cctgctcgag gacaccctcg
     1621 cgatcctgca cggcctgtgg ggcgagcccg acggctggtc ctacgccggg caccaggtct
     1681 cgatcgaggg ggcacggttc cacccgaagc cggtcgacgt gccgggccgg ccgcgaacgc
     1741 cgatcggggg tgccaggccg cggatcctcg tcggcggcgg tggcacgcct cgctcgtacc
     1801 ggctggcggc ccggtacgcg gacgagttca acctcaacac caagagcccc gaccacaccc
     1861 ggtcggc
//
LOCUS       DATDDI010000481         1517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_73245, whole genome shotgun sequence.
ACCESSION   DATDDI010000481 DATDDI010000000
VERSION     DATDDI010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73245"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..590
                     /locus_tag="VIU37_06875"
     CDS             <1..590
                     /locus_tag="VIU37_06875"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEY6013710.1"
                     /translation="GGLLAALFAAAAAVQVIALHVVRTDVEPFADGVSAYALTRVGAL
                     YRGQVIATGIAALLLACVLVAGGFGPGGGVIVLVVFAVSRIFIARYPTDPRGTTRFSP
                     AGRMHVLLAATTFVTIAVAAPWVSAELAGHPDWPGPTGVLVTLGWATALLALGTFPTT
                     TLPATRRVFGLVERGAYAAWTLWIIVAGLSVAGRV"
     gene            752..1480
                     /locus_tag="VIU37_06880"
     CDS             752..1480
                     /locus_tag="VIU37_06880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013711.1"
                     /translation="MRWQGIAIGIVLVVTGLLTAACEEAGGPGVIDGSTPGILAEDTA
                     EPSIDWLDEASPEASPTPLPPAIELRAAISDGKVSIKLRGIGLEAVQLTLTPKIETAI
                     RVVVNPGTMLVPRASGTQTMVVIDKAVITLEPEVSVEAELEVACAQMHDAMPETSDSF
                     RVSSSRAPTDLLKLLRLPAFAGEDFRVKQFAVWTITDNPSRSGYVGLSSWVESGGPTK
                     AEFARIAELFDQAGIAAGHYRALR"
BASE COUNT          195 a          555 c          540 g          227 t
ORIGIN      
        1 ctgggggcct gctcgcggcc ctcttcgcgg cggccgccgc cgtccaggtg atcgcgttgc
       61 acgtggtccg gacggacgtc gaaccgttcg cggacggggt cagcgcgtac gctctcaccc
      121 gcgtcggggc actgtaccga ggccaggtga tcgccaccgg cattgcggcc ctgctgttgg
      181 cctgcgtcct ggtcgccggc gggttcggcc cgggcggcgg cgtgatcgtc ctcgtggtgt
      241 tcgcagtctc acggatcttc atcgcccgat atccgacgga cccgcgcggg acgacccgat
      301 tttcgcctgc cggccgaatg cacgtcctgc tcgccgcgac gacgttcgtg acgatcgcgg
      361 tcgccgcgcc gtgggtctcg gccgagctcg cgggacaccc ggattggcct ggcccgaccg
      421 gcgtcctcgt gacgctcggc tgggcgacgg cactcctggc tctcgggacg ttcccgacca
      481 ccaccctgcc tgccacgcgg cgggtcttcg gcctggtgga gcgcggggcc tacgccgcct
      541 ggacgctgtg gatcatcgtg gccggcctgt cggtcgccgg ccgggtctga gcctgccgcc
      601 cggtccgaac ggctcttgac ccggcccggc gtcgcgacca cgatcgcgcg gaccggcggg
      661 aagcttcgac gcgcagcccg aaccgcggcc gccggggctg cgccgagcca ctggcgagcc
      721 cagcccgctc ccccacgagg gaggcgaagc cgtgcgctgg caaggcatcg cgatcgggat
      781 cgtcctggtg gtcaccggcc tgttgacggc agcgtgcgag gaggccggcg gcccgggcgt
      841 catcgacggc tcgacacccg ggatcctcgc ggaggatacg gctgagccct cgatcgactg
      901 gcttgacgag gcgtcgccgg aggcgagccc gacgccgctc ccccccgcca tcgagctccg
      961 cgccgcgatc agtgacggca aggtgtcgat caagcttcgg ggcatcggcc tcgaggcggt
     1021 ccaactgacg ctgaccccga agatcgagac cgccatccgg gtggtcgtca atcccggcac
     1081 gatgctggtg ccccgggcga gcggcaccca gacgatggtc gtcatcgaca aggccgtgat
     1141 caccctcgag ccggaggtgt cggtcgaagc ggagctcgag gtcgcctgcg cccagatgca
     1201 cgacgcgatg cccgaaacga gcgactcctt ccgcgtctcc tcgagccgcg cgccgacgga
     1261 cctgctcaag ctgctgcgac tcccggcgtt tgccggcgag gacttccggg tcaagcagtt
     1321 cgcggtctgg acgatcaccg acaacccgtc gcggtcgggc tacgtcggcc tcagctcatg
     1381 ggtcgagagc ggcggcccga ccaaggccga gttcgcccgc atcgccgagt tgttcgacca
     1441 ggccgggatc gccgccggcc actatcgagc gcttcggtag cggcgccgga gccggcgccg
     1501 gaccgggcta cctcgtc
//
LOCUS       DATDDI010000482         1766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_239484, whole genome shotgun sequence.
ACCESSION   DATDDI010000482 DATDDI010000000
VERSION     DATDDI010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239484"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VIU37_06885"
     CDS             <1..675
                     /locus_tag="VIU37_06885"
                     /inference="COORDINATES: protein motif:HMM:NF013768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEY6013712.1"
                     /translation="LATPAKSRDARIRRIDLVGINDHMASLILVLREGSIKQALVNFD
                     GDAAIDQPTLNQVAAFLNERLSDLTARRAAARIATLDEADRIQGLARRVGDRVVKIVM
                     DYDAATIEEVFSDGLLNVMEAPEFAQSDKLRRVFSALENRAYLGELVDSVAGAGRIQI
                     YIGHENQPLEMQDVSLVLAPYGRPGRAIGVVGVLGPTRMLYSQAIGTVRFVSGLMNEL
                     VDHLYA"
     gene            668..1243
                     /locus_tag="VIU37_06890"
     CDS             668..1243
                     /locus_tag="VIU37_06890"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEY6013713.1"
                     /translation="MPERRRTRAQERIDEIDVSPSALLKQIEALAAERDAARQTAEEY
                     LTALQRERAEFQNFKRRTTEERMRDLGLAAEDLIRKVLVLADDFDRAIDARPPEIADH
                     PWFEGISAIDRKLRQLLESEGVTAVDASAGRPFDPREHEAIANVPDPNRAEGEIVEEV
                     RRGYRLRDRVIRPALVAVATAIDTSPDAKLN"
     gene            1259..>1766
                     /locus_tag="VIU37_06895"
     CDS             1259..>1766
                     /locus_tag="VIU37_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEY6013714.1"
                     /translation="MGKIIGIDLGTTNSVVAVMEGGEPTVIASAEGGRTVPSVVAFTK
                     TGERLVDQLAKRQAVTNPANTVYSIKRFMGRRWDDPESKRSKSLVPYDVEKDGKSDGV
                     AVQLADGKAYTPPEISAMILQKLRTDAEAYLGEKVTEAVITVPAYFDDTQRQATKDAG
                     RIAGLDVKR"
BASE COUNT          318 a          621 c          604 g          223 t
ORIGIN      
        1 ctggccacgc cggccaagtc gcgtgacgcg cggatccgac gaatcgatct cgtcgggatc
       61 aacgaccaca tggccagcct gatcctcgtg ctgcgtgaag gctcgatcaa gcaggcgctc
      121 gtcaacttcg acggcgacgc cgcgatcgac cagccgaccc tgaaccaggt ggccgccttc
      181 ctcaacgagc ggctgagcga cctcacggcg aggcgagccg cggcccgcat cgcgaccctt
      241 gacgaggcgg accgcatcca gggcctggcc cggcgggtgg gcgaccgggt cgtcaagatc
      301 gtgatggact acgacgccgc aaccatcgag gaagtcttca gcgacggcct gctcaacgtc
      361 atggaggccc ccgagttcgc ccagagcgac aagctgcggc gggtcttcag cgcgctggag
      421 aaccgcgcct acctcggcga gctggtcgac agcgtggccg gcgccggccg catccagatc
      481 tacatcggcc acgagaacca gccgctcgag atgcaggacg tctcgctcgt cctggcgccg
      541 tacgggcggc cgggccgcgc gatcggcgtg gtcggggtgc tgggccccac gaggatgctc
      601 tattcccagg cgatcggcac cgtccgcttc gtctccggac tgatgaacga gttggtggat
      661 cacctgtatg cctgaacgac gacgaacacg agcccaggag cggatcgacg agatcgacgt
      721 ctcgccgtcg gccctgctca agcagatcga ggcgctggcc gccgagcggg acgcggccag
      781 gcagacggcc gaggagtacc tgacggccct gcagcgggag cgcgccgagt tccagaactt
      841 caagcggcgc acgaccgagg agcggatgcg cgacctcggc ctggccgccg aggacctgat
      901 ccgcaaggtg ctggttctcg ccgacgactt cgaccgggcg atcgacgccc ggccgcccga
      961 gatcgcggac cacccgtggt tcgagggcat ctcggccatc gaccgcaagc tgcgccagct
     1021 cctcgagagc gaaggcgtga ccgcggtcga cgccagcgcg ggccggccgt tcgatccgcg
     1081 cgagcacgag gcgatcgcca acgtccccga ccccaaccgg gccgagggcg agatcgtcga
     1141 ggaggtccgc cgcggctatc gcctccgcga ccgggtcatc cgcccggccc tcgtggccgt
     1201 ggccaccgcc attgacacat cccccgacgc aaagctgaac taaggagcat cgcgcgacat
     1261 gggcaagatc atcggcatcg atctcggcac gacgaactcg gtcgtggccg tcatggaggg
     1321 cggcgagccg accgtcatcg cctcggccga gggcgggcgg accgtgccgt cggtcgtcgc
     1381 gttcaccaag accggcgagc gcctcgtcga ccagctggcc aagcgccagg ccgtcacgaa
     1441 cccggccaac acggtctact cgatcaagcg gttcatgggc cgccgctggg acgatcccga
     1501 gtccaagcgg agcaagagcc tggtgccgta cgacgtcgag aaggacggca agagcgacgg
     1561 cgtcgcggtc cagctggcgg acggcaaggc gtacacgccg ccggagatca gcgcgatgat
     1621 cctccagaag ctgcggaccg acgccgaggc ctacctgggc gagaaggtga ccgaggccgt
     1681 catcaccgtc ccggcctact tcgacgacac ccagcggcag gccaccaagg acgccggacg
     1741 catcgccggt ctcgacgtca agcgga
//
LOCUS       DATDDI010000483         2369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_281054, whole genome shotgun sequence.
ACCESSION   DATDDI010000483 DATDDI010000000
VERSION     DATDDI010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281054"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..1608
                     /locus_tag="VIU37_06900"
     CDS             229..1608
                     /locus_tag="VIU37_06900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6013715.1"
                     /translation="MDPDSIPTEPIIDPGPLDATDVAPGPSQASGSPTAGRGRGAAIR
                     RAAIGLVLALTFTVGIGVGRLAPAADGGAGNATPNPTGRPSSAQELALIGEAWDILHQ
                     QYVGKDQLDDQALAYGAIDGLTQAVGDTGHTSFLTPEERAARADELSGSYVGIGVRID
                     TAPDGFPVVDKVFKGSPAEKAGLKTGDELTEVDGKNTAGHSLDDVAGWVRGEAGTTVR
                     IEVRSGPTGIEHEVSIVRAAVAEVVVSWTLVPGSKTAFLRLDQFSNGSADDVKAALGE
                     IKAAGADRLILDLRGNPGGYVNEAVGVASQFLSSGDVYIERDAAGHETHHPVSAGGVA
                     TELPLVVLVDAGTASSAEIVSGALQDAGRAEIVGVKTYGTGTVLGEFPLADGSALRVG
                     TVEWLTPKGRRIWHEGIVPDVIVDRKADVVPLGPDDIQAMTAAQVAAMTDPQLKRALT
                     VATASTPPA"
     gene            complement(1611..>2369)
                     /locus_tag="VIU37_06905"
     CDS             complement(1611..>2369)
                     /locus_tag="VIU37_06905"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013716.1"
                     /translation="GGRLASLVIDGRELLVTDGVGRMAWGSFPMAPFAGRVRDGRFTF
                     RGKSYQLPIELPPHAIHGTVMDRSWQPLDAQTIGTELGPDWPFAGRAVQHFELGEGRL
                     DVRLELHADEPMPASMGWHPWFRRQLAGSDRADGATSPTPPVELDLAAGSMYVRDAAG
                     ITTLDRTPPVPGPWDDCFTDLRRPPVLRWPGFLELTIESDCRDWVVYTVPTEALCVEP
                     QTAPPDALNLEPAIVEPGRPLVATMTWRWRSLAV"
BASE COUNT          351 a          855 c          872 g          291 t
ORIGIN      
        1 acccccgcgc gacggagcgt tggcgtctcc ggtgcgcgat gcgagtggca tcggcccgag
       61 acaggatcgc caccggccct ggcgcgctcg gccaacgaag cttcaccggg tcggctaccc
      121 gcccgtaacc gttctggggc atgcttgatg gtgccgggtc ctgtacccgg cggccggctc
      181 gcgtcgcgag gcggtcatcg tcagcgcgac acgagcacga tgcccccgat ggaccccgac
      241 tcgatcccga ccgaaccgat catcgatccc gggccgctgg acgcgaccga cgtcgcgccc
      301 ggcccctccc aggcttcggg atccccgacg gccggtcgtg gacgcggggc ggcgatccgc
      361 cgggcggcca tcgggctcgt gctcgcgctg acgttcaccg tcggcatcgg cgtcggccga
      421 ctggcaccgg ccgcagacgg cggcgccggc aacgcgacgc cgaatccgac cgggcgcccg
      481 agctcggcgc aggagcttgc cctgatcggc gaggcgtggg acatcctcca ccagcagtac
      541 gtcggcaagg accagctcga cgaccaggcg ctcgcatacg gcgcgatcga cgggctgacc
      601 caggcggtcg gcgacaccgg gcacacctcg ttcctcaccc ccgaggaacg cgccgcgcgc
      661 gcggacgagc tctccggctc ctacgtcggc atcggcgtcc ggatcgacac cgcgcccgac
      721 ggattcccgg tcgtcgacaa ggtgttcaag ggcagcccgg ccgagaaggc cgggctcaag
      781 acgggcgacg agctgaccga ggtggatggc aagaacacgg cgggccacag cctcgacgac
      841 gtcgccggct gggtgcgcgg cgaagccggg accaccgtca ggatcgaggt ccggagcggg
      901 cccaccggga tcgagcacga ggtcagcatc gtccgggcag ccgtcgccga ggtcgtcgtg
      961 tcctggacgc tcgtgccggg cagcaagacc gccttcctgc gcctcgacca gttctcgaac
     1021 gggtcggccg acgacgtgaa ggcggcgctc ggcgagatca aggcggccgg cgccgaccgg
     1081 ctgatcctcg acctgcgcgg taacccgggc ggctacgtca acgaagccgt cggcgtcgcg
     1141 agccagttcc tgtcgagtgg cgacgtctac atcgagcgcg acgccgccgg tcacgagacg
     1201 caccacccgg tctcggcggg cggcgtggcc accgagctcc cgctcgtcgt cctcgtcgat
     1261 gccggcaccg ccagctccgc cgagatcgtg tcgggggcgc tccaggacgc cggccgtgcc
     1321 gagatcgtcg gcgtcaagac ctacgggacc ggcaccgtcc tcggcgagtt tccgctggcc
     1381 gacgggtccg ccctccgggt ggggacggtg gagtggctga caccaaaggg ccgccgcatc
     1441 tggcacgaag gcatcgtccc ggacgtgatc gtcgaccgga aggcggacgt cgtgccgctc
     1501 ggtcccgacg acatccaggc gatgaccgcc gcgcaggtgg ccgcgatgac cgatccgcag
     1561 ctgaagcggg cgctgaccgt ggcgacggcc tcgacgccgc cggcctgagc tcagacggcg
     1621 agcgaccgcc agcgccaggt catcgtcgcg accagcggcc gcccgggctc cacgatcgcc
     1681 ggctccagat tgagcgcgtc gggcggggcg gtctgcggct cgacgcagag cgcctcggtc
     1741 gggaccgtgt agaccaccca gtcgcggcag tcggattcga tggtcagctc gaggaacccg
     1801 ggccagcgga ggacgggggg ccgccggaga tcggtgaagc agtcgtccca gggtccgggg
     1861 acgggcgggg tccggtcgag cgtcgtgatg ccggcggcat cgcggacgta catggagccc
     1921 gcggcgaggt cgagctcgac gggcggcgtc ggcgatgtgg caccgtccgc ccggtcgctc
     1981 cccgccagct gccggcggaa ccacgggtgc cagcccatcg atgcgggcat cggctcgtcg
     2041 gcgtgcagct cgagccggac gtcgagacgt ccttcgccga gctcgaagtg ctggaccgcg
     2101 cgtccggcga acggccagtc cggcccgagc tcggtgccga tcgtctgcgc gtcgagcggc
     2161 tgccacgagc ggtccatcac cgtgccgtgg atcgcgtgcg gcggcagctc gatgggaagc
     2221 tggtaggact tgccccggaa cgtgaaccgg ccgtcgcgga cccgaccggc aaacggcgcc
     2281 atcgggaacg agccccaggc catccggccc acaccgtcgg tgacgaggag ctcgcgaccg
     2341 tcgatcacga gcgaggcgag ccgcccgcc
//
LOCUS       DATDDI010000484         1752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_10879, whole genome shotgun sequence.
ACCESSION   DATDDI010000484 DATDDI010000000
VERSION     DATDDI010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10879"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VIU37_06910"
     CDS             <1..205
                     /locus_tag="VIU37_06910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013717.1"
                     /translation="GVTGGTSTPIEDLRDVAEWILANAGTPEASAHAAELAHAALERA
                     ATPAGRTTSLPTPARTGAVSGAA"
     gene            207..>1752
                     /gene="der"
                     /locus_tag="VIU37_06915"
     CDS             207..>1752
                     /gene="der"
                     /locus_tag="VIU37_06915"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEY6013718.1"
                     /translation="MAIGRGGIPVVAIVGRPNVGKSTLFNRFLGQRSAIVEDRARTTR
                     DRLYGDTEWNGRRFVIVDTGGLELDPDDQIEARVQEQARLAIAEADVILFLVDAVSGL
                     TPADLEAAEILRRAKAPVIVVANKADNEKRELEAAEFHSLGWEETYAISASHGRGTGD
                     LLDAIVWALPPESEAELARKAREAEADAWADEVAAGRLEPYVVTDADAATDESEDDAD
                     ADGTDAEARRWDAAMAADADGEPAAIAFIGRPNVGKSSLLNALLGEDRAIVSDIPGTT
                     RDAIDTRLAWGRSEVVLIDTAGIRRRGKVASGPSAERYSTLRALHALSRADVAVLVID
                     AVEGLTAQDSHVAGYVIEEGKGLVIAVNKWDLVADKTDRTFDQYIEWIRNEAPFLDFA
                     PVVSISAKTGQRVGRVLEMAIDIWGERRKRVSTGELNRVLTAATDRTPPPPVRGHRPR
                     LFYATQAAVAPPTFVFFASDASSVHFSYRRYLENRLRETFGFDGTPIRLVFRDRSSVK
                     LPRRRKS"
BASE COUNT          256 a          654 c          619 g          223 t
ORIGIN      
        1 cggggtcacc ggcggcacgt cgaccccgat cgaggacctg cgcgatgtcg ccgagtggat
       61 cctcgccaac gccggcacgc cggaagccag cgcccacgct gcggagctcg cccacgccgc
      121 cctggaacgg gccgccacgc ccgccggacg gacgacctca ctccctacgc ccgcacggac
      181 cggcgccgtc tccggcgccg cctgacgtgg ccatcggtcg gggcgggatc ccggtcgtcg
      241 ccatcgtcgg ccgccccaat gtcggcaaga gcacgctgtt caaccgcttc ctcggccagc
      301 gctcggcgat cgtcgaggac cgggcgcgga cgacgcgcga tcgcctgtac ggcgatacgg
      361 agtggaacgg ccgccgcttc gtgatcgtgg acaccggcgg gctcgagctg gaccccgacg
      421 accagatcga ggcgcgcgtc caggagcagg cccggctggc gatcgccgag gccgacgtga
      481 tcctgttcct cgtggacgcc gtgagcggcc tcaccccggc ggacctcgag gccgcggaga
      541 tcctgcggcg cgccaaggcg ccggtcatcg tcgtggcgaa caaggcggac aacgagaagc
      601 gcgagctcga ggccgcggag ttccactcgc tcggctggga ggagacgtac gcgatctcgg
      661 cctcgcacgg ccgtggcacc ggcgacctgc tcgatgcgat cgtctgggcg ctgccgcccg
      721 agagcgaggc cgagctggcg cgcaaggcgc gcgaggcgga ggccgacgcg tgggccgacg
      781 aggtggctgc cggccgcctg gagccctacg tcgtgaccga cgccgacgcc gcgaccgacg
      841 agtcggagga cgacgccgac gccgacggca ccgacgccga ggcccggcgc tgggacgcgg
      901 cgatggcggc cgacgccgac ggcgagcccg cggccatcgc cttcatcggg cggccgaacg
      961 tcggcaagtc gagcctgctc aacgccctgc tcggcgagga tcgcgcgatc gtctcggaca
     1021 tcccggggac cacccgcgac gccatcgaca cccgcctggc ctggggtcgc agcgaggtcg
     1081 tcctgatcga taccgccggg atccgccgtc gcggcaaggt cgcgtcgggc ccatcggccg
     1141 agcgctactc cacgctccgg gcgctccacg cgctgtcacg tgccgatgtc gccgtcctcg
     1201 tcatcgacgc cgtcgaaggc ctcaccgccc aggactccca cgtggccggc tacgtcatcg
     1261 aggagggcaa gggcctggtc atcgcggtca acaagtggga cctcgtggcc gacaagacgg
     1321 accggacgtt cgaccagtac atcgagtgga tccgcaacga ggcgccgttc ctcgacttcg
     1381 cgccggtcgt ctcgatcagc gccaagaccg gccagcgcgt gggtcgcgtg ctcgagatgg
     1441 ccatcgacat ctggggcgag cgtcgcaagc gggtgtccac cggcgagctc aaccgcgtgc
     1501 tgacggccgc caccgatcgg accccgccgc cgcccgttcg gggtcaccga ccgcggctgt
     1561 tctacgcgac gcaggccgcc gtggcaccgc cgacgttcgt cttcttcgcg tcggacgcgt
     1621 catcggtcca cttcagctac cggcgctacc tcgagaaccg gctgcgcgag acgttcggct
     1681 tcgacggcac gccgatccgt ctcgtgttcc gcgaccggtc gtcggtcaag ctgccgcggc
     1741 gccggaagag cc
//
LOCUS       DATDDI010000485         2099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_406091, whole genome shotgun sequence.
ACCESSION   DATDDI010000485 DATDDI010000000
VERSION     DATDDI010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406091"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VIU37_06920"
     CDS             <1..632
                     /locus_tag="VIU37_06920"
                     /inference="COORDINATES: protein motif:HMM:NF015883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013719.1"
                     /translation="PIKVVLLNYPDGQVEEMDAVNNPEDSSAGTRKVPFARELYIERD
                     DFREDPPPKFFRLAPGREVRLRNAYFITCHDVVKDAEGRIEELRCTYDPATRGGDAPD
                     GRRPKATLHWVSAAHAIPAEVRLYDHLFVRPDPGADGDLFADLDPASETIVPHAMLEP
                     SLADAPLGQTVQFERLGYFAPDTDSRPGALVFNRTLTLKDSWARLQARS"
     gene            complement(667..1629)
                     /locus_tag="VIU37_06925"
     CDS             complement(667..1629)
                     /locus_tag="VIU37_06925"
                     /inference="COORDINATES: protein motif:HMM:NF024676.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HEY6013720.1"
                     /translation="MSTSARLLRLLSLLQTPRDWTGSELAQRLEVSPRTVRNDIERLR
                     DLGYPVHATRGSVGGYRLEAGTSMPPLLLDDDEAVAVAIGLQAATSGAVTGIEETSLR
                     ALAKLEQVLPPRLRRQVSTLQRMTVHVRRRRSGPTVAPAMLAELARLAREHFGLWFDY
                     SDRHETTSKRRVEPYRIVNAGQRWYLVAWDLDRTDWRTFRVDRIREGMSPGPRFTPRP
                     LTDAEVEALVSRGVPPEARRHQARVTVGVPAAELAERFGPWIGTITPLDERSCLLTTG
                     SDRLGDLAAYLGMLGANFTVTEPPELVEQIRLLATRYAAATAGA"
     gene            1741..>2099
                     /locus_tag="VIU37_06930"
     CDS             1741..>2099
                     /locus_tag="VIU37_06930"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013721.1"
                     /translation="MQAATGSADRPPIELPHPVRMRVLGAVMVGVFLAALDQTVVGTA
                     LPIIVTDLDGQNLYTWAFTIYLLTSTISGPIYGKLSDLYGRRPIFIWAVSLFLAASVF
                     AGLSQEMWQFILARGLQG"
BASE COUNT          314 a          752 c          720 g          313 t
ORIGIN      
        1 atccgatcaa ggtcgtgctg ctcaactacc cggacgggca ggtcgaggag atggacgccg
       61 ttaacaaccc cgaggattcg tcggccggca cgcgcaaggt gcccttcgct cgtgagctct
      121 acattgagcg cgacgacttc cgcgaggacc cgccgccgaa gttcttccgc ctcgcgcccg
      181 gccgcgaggt ccggctgcgg aacgcctact tcatcacctg ccacgacgtg gtcaaggacg
      241 cggagggccg catcgaggag ctgcgctgca cgtacgaccc cgcgacgcgc gggggcgacg
      301 cgcccgacgg ccggcgtccc aaggccacgc tccactgggt ctcggccgcc cacgcgatcc
      361 cggccgaggt gcgcctctac gaccacctgt tcgtccggcc ggatcccggc gctgacggcg
      421 acctgttcgc cgacctcgac ccggcatccg agacgatcgt gccgcatgcc atgctggagc
      481 cgtcgctcgc cgacgcgccg ctcggccaga ccgtccagtt cgagcggctc gggtacttcg
      541 cacccgacac cgattcgcgt cccggggcgc tggtcttcaa ccggaccctg accctcaagg
      601 acagctgggc caggctccag gcgaggtcgt aggccccgcg tcggtcaggg gcgtcccgct
      661 tcaggactat gcgccggcgg tggcggcggc gtagcgggtg gcgaggagac ggatctgctc
      721 gaccagctcg ggcggctcgg tgaccgtgaa gttggcaccg agcatgccga ggtaggcggc
      781 caggtccccc agccggtcgg agccggtcgt cagcaggcac gagcgctcgt cgagcggcgt
      841 gatcgtcccg atccacggcc cgaatcgctc ggccagctcg gcggccggca ccccgaccgt
      901 cacccgcgcc tggtggcgac gcgcctcggg cggcacgccg cgcgacacga gcgcctcgac
      961 ctcggcgtcg gtcagcgggc gcggcgtgaa cctcggtccg ggtgacatcc cctcgcggat
     1021 gcgatccacc cggaacgtcc gccagtcggt gcgatcgaga tcccaggcga cgaggtacca
     1081 gcgctgtccc gcgttgacga tccggtacgg ctcgacccgt cgcttcgacg tcgtctcgtg
     1141 ccggtccgag tagtcgaacc agagcccgaa atgctcgcgc gccaggcggg cgagctcggc
     1201 gagcatggcc ggggcgacgg tcgggccgga ccgacggcgc cggacgtgga cggtcatccg
     1261 ctggagcgtg ctcacctgcc gtcgaaggcg cggcgggagg acctgctcga gcttggcgag
     1321 cgcccgcagc gacgtctcct cgatgcccgt caccgccccg ctggtggcgg cctggaggcc
     1381 gatcgcgacc gcgacggcct cgtcgtcgtc gagcagcaag ggcggcatgg acgtgccggc
     1441 ctcgagccgg tagccaccga ccgagcctcg cgtcgcgtgg accggatagc caaggtcgcg
     1501 cagccgttcg atgtcgttgc ggacggtgcg cgggctgacc tcgagtcgct gggcgagctc
     1561 cgacccggtc cagtcgcgtg gcgtctggag cagggaaagc aaccggagga gccgtgccga
     1621 ggtactcatg aacaccgaga atctaacagg tcattaggca agaattcgac ctaatcagcc
     1681 gatagggttc gggacatcaa ccccatcgag ctgtgaggtg ctccggtgtc ccacgaagcc
     1741 atgcaagctg cgaccggatc ggcagatcgg ccgccgatcg agctccccca ccccgttcga
     1801 atgcgcgtcc tcggtgcggt catggtgggc gtcttcctcg ccgccctcga ccagaccgtg
     1861 gtgggcacgg cgctgccgat catcgtcacc gacctcgacg ggcagaacct ctacacctgg
     1921 gccttcacga tctaccttct gacctcgacg atcagcgggc ccatctacgg caagctctcc
     1981 gacctctacg gccggcgtcc gatcttcatc tgggcggtgt cgctgttcct ggcggcctcg
     2041 gtcttcgccg ggctgagcca ggagatgtgg cagttcatcc tcgcccgcgg cctccaggg
//
LOCUS       DATDDI010000486         2123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_447275, whole genome shotgun sequence.
ACCESSION   DATDDI010000486 DATDDI010000000
VERSION     DATDDI010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447275"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..892
                     /locus_tag="VIU37_06935"
     CDS             <1..892
                     /locus_tag="VIU37_06935"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY6013722.1"
                     /translation="ASVERAFEAWIRRAPMGARLVANVGEPGVARLVSGLGDWPGTIM
                     AYALLDQAPQRVGGYARGIAERFATAAGAASALLGRVSAADRDSTTIEIHGLDPLAGP
                     LAARLVTAGRHNAANALAVAGAASILGVAPSAIVAGLGTFGGVGRRLERKGDRAGVTV
                     YDDYGHHPTAIRETLAAVRQREPGRRVWAVLEPLTFHRTAAMLDELADALGSADAVAV
                     ADIWAGRDPDTTIASAAALAAATAAGRPGLPVAATGSVEATAAWLAGHVVPGDVVLVM
                     GGGRSYRIGELLLERLGERQ"
     gene            889..1272
                     /locus_tag="VIU37_06940"
     CDS             889..1272
                     /locus_tag="VIU37_06940"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY6013723.1"
                     /translation="MIGYAQAGELLAAYGRAWETFDGDAWVAIFTDEAEYHEDPFGAP
                     LVGHNALRAYLLDASASQRDVEFTIERHWVSGDTVLAAWHVTFTRQGTGRLVRMAGFL
                     TAEVAPDGRIARFREWTNYGPEGRG"
     gene            1288..1779
                     /locus_tag="VIU37_06945"
     CDS             1288..1779
                     /locus_tag="VIU37_06945"
                     /inference="COORDINATES: protein motif:HMM:NF003819.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEY6013724.1"
                     /translation="MAGDQSFDVVSDFDEQELRNALDQVRREIGTRFDFKGVTVELTQ
                     AKTELVLLTDDEHRANAIKDLIESKAIRRGLSLKIFDWGKIEEAGGNKVRQHIGLRRG
                     LSDEIAKRITRLIRDEFPKVKSQIQGDAVRVSGKSRDDLQRVIARLRELDEPVPLQFE
                     NYR"
     gene            1824..>2123
                     /locus_tag="VIU37_06950"
     CDS             1824..>2123
                     /locus_tag="VIU37_06950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013725.1"
                     /translation="MSELDADIQPDEPDTATTPAAMAELPPEAPAEPEADAEAVPEPE
                     RPTATVPDVAPETEPAPAEPVVAETAPEPEPEPESAAPAAAEAAEPAPESAFEPAP"
BASE COUNT          321 a          755 c          783 g          264 t
ORIGIN      
        1 ggcctcggtc gagcgcgcgt tcgaggcgtg gatccggcgc gcgcctatgg gtgcgaggct
       61 cgtcgccaac gtcggcgagc cgggcgtggc gagactcgtg agcggcctgg gcgactggcc
      121 gggcacgatc atggcctacg cgctgctcga tcaggcgccg caacgggtcg gcggctacgc
      181 cagggggatt gccgagcggt tcgccacggc ggccggcgcg gcgagcgccc tgctgggccg
      241 cgtgtccgcc gcggatcgag actcgacgac gatcgagatc cacggcctcg acccgctcgc
      301 cggtccgctg gcggcgcggc tggtcaccgc gggccgtcac aacgcggcga acgccctggc
      361 ggtggccggc gcggcgtcga tcctgggcgt ggctccttcc gccatcgtcg ccggcctggg
      421 aacattcggc ggtgtcgggc gccggctgga acggaagggc gatcgcgccg gggtgaccgt
      481 ctacgacgac tatggccacc accccaccgc gatccgcgag acgctcgctg cggtccgcca
      541 gcgggagccg ggacgccgcg tctgggccgt gctggagccc ctgaccttcc atcgcaccgc
      601 ggcgatgctc gacgagttgg cggacgcgct gggatcggcc gacgccgtgg cggtggcgga
      661 catctgggcg ggtcgcgacc cggatacgac gatcgcctcc gcggccgcac tggcagcggc
      721 cacggcggcg ggaaggcccg gcctgccggt cgccgccacc ggatcggtcg aggccacggc
      781 cgcctggctc gccggccacg tcgtgccggg tgacgtggtc ctcgtcatgg gcgggggccg
      841 gagctaccgg atcggcgagc tcctgctcga gcgactgggc gagcggcagt gatcgggtac
      901 gcccaggccg gtgagctgct cgccgcctac ggacgtgcct gggagacgtt cgacggggac
      961 gcctgggtcg ccatcttcac cgacgaagcc gagtaccatg aggacccgtt cggcgcgccg
     1021 ctcgtcggcc acaatgccct gcgggcatac ttgctggacg cctcggcgtc gcaacgggac
     1081 gtcgagttca ccatcgaacg ccactgggtc tcgggcgaca cggtgctcgc cgcctggcac
     1141 gtgacgttca ccaggcaggg gaccggccgc ctcgtccgca tggccgggtt cttgacggcc
     1201 gaggtcgccc ccgacggccg gatcgcccgc ttccgcgaat ggacgaacta cgggcccgag
     1261 ggacgaggct aggggagagg aggagcgatg gccggagacc agtcattcga cgtggtcagc
     1321 gacttcgacg aacaggagct gcgcaacgcg ctggaccagg ttcgccgcga gatcgggacc
     1381 cggttcgact tcaagggcgt gaccgtggag ctcacccagg cgaagaccga gctggtcctg
     1441 ctgaccgacg acgagcatcg cgccaacgcg atcaaggacc tgatcgaatc gaaggcgatc
     1501 cggcgcggcc tgtcgctcaa gatcttcgac tggggcaaga tcgaggaggc cggcggcaac
     1561 aaggtccgcc agcacatcgg ccttcgccgc ggactgtccg acgagatcgc caagcggatc
     1621 acccgcctga tccgggacga gttcccaaag gtgaagtcgc agatccaggg cgacgcggtc
     1681 cgcgtgtccg gcaagagccg cgacgatctc cagcgcgtca tcgcgcggtt gcgcgagctc
     1741 gatgagccgg tcccgctcca attcgagaac taccgctgaa tctccccgac acggggccca
     1801 ccacctgaag gagcgcagcc gccatgagcg agctcgacgc cgacatccag ccagacgagc
     1861 ccgacaccgc cacgacgccg gccgccatgg ccgagctgcc gcccgaagcc ccggccgagc
     1921 ctgaagctga cgccgaggcc gtgcccgagc ccgagcggcc cacggcgacc gtgccggacg
     1981 ttgcgcccga gactgagccc gcgccggcgg agccggtcgt ggccgagacg gcgccggaac
     2041 ccgagcccga gccggaatcc gcggcacccg cggcggccga ggcggccgag ccggctcccg
     2101 agtccgcgtt cgaacctgcg ccg
//
LOCUS       DATDDI010000487         1694 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_551939, whole genome shotgun sequence.
ACCESSION   DATDDI010000487 DATDDI010000000
VERSION     DATDDI010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551939"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VIU37_06955"
     CDS             <1..506
                     /locus_tag="VIU37_06955"
                     /inference="COORDINATES: protein motif:HMM:NF044669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013726.1"
                     /translation="AATQAAGRPEPTRTVQPTPAVAPPPTAAPPTADAPAAASPAGTP
                     APPVRPAGGAPDLDRLAGGWMEVVASVGPATRAVINECRPLSVEGNIVTLGFPEAKAF
                     LKDVAARKAKELDAAVGAFLGRSVNVRCVATNIELPMPPTTDAELVLAEARRIFADDI
                     VEIGEVS"
     gene            615..914
                     /locus_tag="VIU37_06960"
     CDS             615..914
                     /locus_tag="VIU37_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006235174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEY6013727.1"
                     /translation="MANLQRMAQQMQQEMLRVQAELESATVDGSAGGGVVTAVVTGKQ
                     ELVSVTIDPSAVDPDDVEMLQDLVVAAINDALRASRELAEQKMSAVTGGLRLPGM"
     gene            933..1550
                     /gene="recR"
                     /locus_tag="VIU37_06965"
     CDS             933..1550
                     /gene="recR"
                     /locus_tag="VIU37_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008301521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HEY6013728.1"
                     /translation="MVTPVIEPVARLIEAFARLPGIGPKTAQRLTYHLLRAPDAEART
                     LAGALVAVRDQVVFCERCFNISDQPLCPICRDPGRDETRLCVVEEPLDVLAIERTGEF
                     KGRYHVLHGAISPIDGIGPDRLRVRELLERADQAARDGVPFVEVIMATNPTLEGEATA
                     MYLAERLESVVGTVSRIARGLPVGGDLEYADEVTLIRSFQGRRAV"
BASE COUNT          233 a          612 c          608 g          241 t
ORIGIN      
        1 acgccgcgac ccaggcggct gggcggcccg aacccacgcg gaccgtccag ccgacgcccg
       61 ccgtcgctcc gccacccacg gccgccccgc cgacggccga cgcacccgcc gccgcgtcgc
      121 cggccggcac cccggcgccg cccgtccgtc cggccggagg tgcgccggac ctggatcggc
      181 ttgccggtgg gtggatggag gtcgtcgcgt cggtcggacc ggcgacccgc gcggtcatca
      241 acgagtgccg gccgctgtcg gtcgagggca acatcgtgac cctcggcttc ccagaggcga
      301 aggcgttcct caaggatgtc gccgcccgga aggcgaagga gctcgacgcc gcggtgggtg
      361 ccttcctcgg gcgctccgtc aacgttcggt gcgtggccac caacatcgag ctcccgatgc
      421 cgccgacgac cgacgccgag ctggtgctcg ccgaggcgcg gcggatcttc gccgacgaca
      481 tcgtcgagat cggcgaggtc agctgaccgt cggcgctgcc gacgtgcgag tgcgcgaacg
      541 ggcgggctgc agcaccgacc tcgttgctgc agactgactc ccgatcgaac cggacggagg
      601 agacgcccat gggcatggcg aacttgcagc gaatggcgca gcagatgcag caggagatgc
      661 tgcgggtcca ggccgagctg gaatccgcca ccgtcgacgg gtcggccggc ggcggggtcg
      721 tcaccgccgt cgtgaccggc aagcaggagc tcgtcagcgt gaccatcgac ccctcggccg
      781 tcgatccgga cgatgtcgag atgctccagg acctggtcgt cgccgccatc aacgacgcac
      841 tccgcgcctc gcgcgagctc gcggagcaga agatgtcggc ggtcaccggc ggcctccggc
      901 tcccgggcat gtagcgggac ggcctccgcc acgtggtcac cccggtcatc gaacctgtcg
      961 cccgcctgat cgaggcgttc gcgcgcctgc ccggcatcgg gccgaagacc gcgcagcggt
     1021 tgacctacca cctgctccgg gcgcccgacg ccgaggctcg gaccctggcc ggggcgctcg
     1081 tcgccgtccg cgatcaggtg gtcttctgcg agcgctgctt caacatctcg gaccagccgc
     1141 tctgtccgat ctgccgcgac cccgggcgcg acgagacgcg actgtgcgtg gtcgaggagc
     1201 cgctcgacgt ccttgccatc gagcgaaccg gcgagttcaa ggggcggtac cacgtgcttc
     1261 acggcgcgat ctcgccgatc gacggcatcg gaccggaccg gctgcgggtc cgcgagctgc
     1321 tcgaacgggc cgatcaggcg gcccgggacg gcgtgccgtt cgtggaggtc atcatggcca
     1381 ccaatccgac gctcgagggc gaggcgaccg cgatgtacct ggccgagcgt ctcgaatcgg
     1441 tggtcggcac ggtcagccgg atcgcccgcg gcctgcccgt cggcggcgac ctggagtacg
     1501 ccgacgaagt gacgctgatc cgctcgttcc agggccggcg ggcggtctga ggcgatgagc
     1561 aacctggtct tcgagatcct gctccgcctg gcgaaggccg gtgccgccgc cgtggtcggt
     1621 ctcgtggtct atgcggtggc cgtcggcgtc ctgggtgcca atggatccgt cgagctcgcc
     1681 ctgctctgct ggct
//
LOCUS       DATDDI010000488         1871 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_510063, whole genome shotgun sequence.
ACCESSION   DATDDI010000488 DATDDI010000000
VERSION     DATDDI010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510063"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VIU37_06970"
     CDS             complement(<1..482)
                     /locus_tag="VIU37_06970"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY6013729.1"
                     /translation="MTDEQAMASGRIAIGIDVGGSGIKAAVVDVEAGQFRSERIRVAT
                     PSPSTPEAVIAAIGRISKRLARAAKLGPTTPVGVGLPGVTMDGTLKFAGNIDPAWIGF
                     PVVERLRKATGRPVTIVNDADAAGIAEMRFGIGRDRQGVVIFLTLGTGVGSGVFLDGK
                     L"
     gene            complement(502..1269)
                     /locus_tag="VIU37_06975"
     CDS             complement(502..1269)
                     /locus_tag="VIU37_06975"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEY6013730.1"
                     /translation="MRLEGKVSIITGGGSGMGRVAAQLFGAQGARVVVAEYNEAAGAE
                     TVDLVTKAGGQATFVRTDVSKEADAKAMVDHAVATYGRLDCLYNNAGVMPEADHSVTD
                     TDVATWDAVMAVNVRGVFLGCKYAIPAMIAGGGGSIINIASFVAILGCSVPQDAYTAS
                     KGAVLSLTRSLAVQFGPNGIRTNAICPGPVETPLLMDWLLKDEAAKKLRLARNPTGRF
                     GKPEEIVNLAIYLASDESRWTNGASLVVDGGITVNYF"
     gene            1368..>1871
                     /locus_tag="VIU37_06980"
     CDS             1368..>1871
                     /locus_tag="VIU37_06980"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY6013731.1"
                     /translation="MPTDADLIAAVKEGDATRVAELVAEQPELATARDLRGVSALMLA
                     RYRLDRQVTDALLQADPELDVFEATALGYVDRLRARLDEDPAAVTATSGDGFTALHLA
                     AYFGKAEVARILLQAGAGVNAVADNEMRVQPLHSTAAGRHLEVCRLLLAAGADVNARQ
                     AGGFTPLH"
BASE COUNT          258 a          684 c          648 g          281 t
ORIGIN      
        1 agcttgccgt cgaggaagac gccggagccc acgcccgtgc ccagggtcag gaagatcacc
       61 acgccctggc gatccctgcc gatcccgaag cgcatctcgg cgatgcccgc ggcgtcggca
      121 tcgttgacga tggtgaccgg ccgcccggtc gccttgcgca gccgctccac gaccgggaag
      181 ccgatccagg ccgggtcgat gttgccggcg aacttgaggg tgccgtccat cgtcacgccc
      241 ggcaggccga ccccgaccgg cgtggtcgga cccagcttgg cggcgcgggc cagccgcttc
      301 gagatccggc cgatggcggc gatgaccgcc tccggcgtcg aggggctggg cgtcgccacg
      361 cggatccgct ccgagcggaa ctgccccgcc tccacgtcga ccacggcggc cttgatcccg
      421 ctcccgccca cgtcgatccc gatcgcgatc cgaccgctcg ccattgcctg ctcgtccgtc
      481 atcgcgatcg cctcatctcg atcagaagta attcacggtg atgccgccgt cgacgacgag
      541 cgacgcgccg ttggtccagc gcgattcgtc cgacgcgagg tagatggcca ggttgacgat
      601 ctcctcgggc ttgccgaaac gcccggtcgg gttgcgcgcg agccgaagct tcttggcggc
      661 ttcgtccttg agcagccagt ccatcagcag cggcgtctcg accggccccg ggcagatcgc
      721 gttcgtgcgg atcccattgg ggccgaactg gaccgcgagg ctccgggtga gcgacaggac
      781 cgcgcccttc gaggcggtgt aggcatcctg cggcacgctg cagccgagga tcgcgacgaa
      841 gctggcgatg ttgatgatcg agccgccgcc acccgcgatc atggccggga tggcgtactt
      901 gcagccgagg aagacgcccc gcacgttgac ggccatgacg gcgtcccagg tcgcgacgtc
      961 cgtgtccgtg acggaatggt ctgcctcggg catcacgccg gcgttgttgt agaggcagtc
     1021 aagccggccg taggtcgcca cggcgtgatc gaccatggcc ttggcgtcgg cttccttcga
     1081 gacgtctgtc cggacgaacg tggcctggcc gccggccttc gtgacgaggt cgacggtctc
     1141 ggcgccggcg gcctcgttgt actcggcgac gaccacccgc gcaccctgcg cgccgaacag
     1201 ctgggcggcc acgcgaccca tgccgctgcc gccgccggtg atgatcgaga ccttgccctc
     1261 gagccgcatg gcactcctct tcgcttcgcg tccgcgacag cgtagcgccc gggcgtggcg
     1321 ggcgcccgac tcgtccgccg ggcccggcgc ccgggtagga tgggcccatg ccgacggacg
     1381 cggacctgat cgcggcggtc aaagaggggg acgcgacccg ggtcgccgag ctggtcgccg
     1441 agcaaccgga gctggccacc gctcgcgatc tccgcggcgt ctcggcgctg atgctcgccc
     1501 ggtaccggct cgatcgtcag gtgaccgacg ccctgctcca ggccgacccg gagctggacg
     1561 tgttcgaagc caccgcgctc ggctacgtcg atcggttgcg cgcccgcctc gacgaggacc
     1621 cggccgcggt caccgcgacg tccggcgacg ggttcaccgc gctccatctc gccgcgtact
     1681 tcggcaaggc cgaggtggcg cggatcctgc tccaggccgg tgccggcgtt aatgcggtgg
     1741 ccgacaacga aatgcgcgtc cagccgctcc acagcaccgc cgccggccgg catctcgagg
     1801 tctgccggct gctgctggcg gccggcgcgg acgtaaacgc ccgccaggcg ggtggcttca
     1861 cgccgctcca t
//
LOCUS       DATDDI010000489         2181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_31453, whole genome shotgun sequence.
ACCESSION   DATDDI010000489 DATDDI010000000
VERSION     DATDDI010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31453"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..863
                     /locus_tag="VIU37_06985"
     CDS             <1..863
                     /locus_tag="VIU37_06985"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR03557 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY6013732.1"
                     /translation="TPQQGQSAFAWAFMGALGTRTTLPFGTAVTCPGFRYHPAVIAHA
                     AATLGAMFPGRFWLGLGAGEALNEHIVGGEWPEANVRSSMLFEAIEIINKLFSGNVVK
                     HRGEHFKLESAKLYTRPEQPVPIYVATAGPVNAKRTGKFADGMITVGAADEKIGMLWD
                     KFDEGAREAGKDPTGKPKLLQIHLSWAPTDEEAMDNALREWPNGGMAFPKQDIKNPED
                     FALMAKLVRPEHFTNRCEVASSLAAQTENIQHYVDMGFDEIHLHNVGRNQKEFIEVFG
                     REVLPNLRLG"
     gene            874..1338
                     /locus_tag="VIU37_06990"
     CDS             874..1338
                     /locus_tag="VIU37_06990"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013733.1"
                     /translation="MIDARFGHVNLVARDWRRLADFYGRVLGCTFVPPERDLRGPILE
                     AGTGIPGAALHGVHLRLPGHGPNGPTLEIFQYETGPAPLPTAANRPGFGHIAFAVPDV
                     EVARAAFLAEGGRAVGEVVTSTNADRRRVTWTYVADPEGNLVELQAWSEPAD"
     gene            complement(1790..>2181)
                     /locus_tag="VIU37_06995"
     CDS             complement(1790..>2181)
                     /locus_tag="VIU37_06995"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:NF015290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HEY6013734.1"
                     /translation="SCAVSGTGVHAVMGIGGAPEGVLTAAALRCLGGEIQARFRYRSD
                     DERARGARMGHGDESRIYRTEDLASGNNLVFAATGVTTGDLLQGVRFFGGGARTHSLV
                     MAYQTKQVRFVDTVHMFDRDSPPRVRL"
BASE COUNT          329 a          800 c          751 g          301 t
ORIGIN      
        1 ggacgccgca gcagggccag agcgcgttcg cctgggcgtt catgggcgcc ctcgggacgc
       61 ggaccacgct gccattcggg accgccgtga cctgcccggg cttccgctat cacccggcgg
      121 tgatcgccca cgcggcggcg accctgggcg cgatgttccc cgggaggttc tggctcggcc
      181 tcggcgcggg cgaggcgctc aacgagcaca tcgtcggcgg cgagtggccg gaggcgaacg
      241 tccgcagctc gatgctgttc gaggcgatcg agatcatcaa caagctgttc agcggcaacg
      301 tcgtcaagca ccggggcgag cacttcaagc tcgagagcgc caagctctac acccgccccg
      361 agcagcccgt cccgatctac gtcgccacgg ccgggccggt caatgccaag cggaccggca
      421 agttcgccga cgggatgatc accgtgggcg ccgccgacga gaagatcggc atgctctggg
      481 acaagtttga cgagggcgcg cgcgaggccg gcaaggaccc gaccgggaag ccgaagctgc
      541 tccagatcca cctgtcctgg gcgccgaccg acgaggaggc gatggacaac gcgctgcgcg
      601 agtggccgaa cggcgggatg gccttcccga agcaggacat caagaacccc gaggacttcg
      661 cgttgatggc caagctggtc cggccggagc acttcaccaa ccgctgcgag gtggcctcga
      721 gcctggcggc gcagaccgag aacatccagc actacgtcga catgggcttc gacgagatcc
      781 acctccacaa cgtcggccgg aaccagaagg aattcatcga ggtcttcggt cgcgaggtgc
      841 tgccgaacct gcggctgggc tagcggcaag cccgtgatcg acgcccgttt cggccacgtc
      901 aacctggtcg cccgcgactg gcgccgactc gccgacttct atggccgggt cctcggctgc
      961 acgttcgtgc cgcccgagcg ggacctgcgc gggcccatcc tcgaggccgg gacgggcatc
     1021 cccggcgcgg ccctgcacgg cgtccatctg cggctccccg gccacgggcc caacggcccg
     1081 acgctcgaga tcttccagta cgaaacggga ccggctccgc ttccgaccgc ggccaatcgg
     1141 ccggggttcg ggcacatcgc cttcgccgtg cccgatgtcg aggtcgcccg ggcggcgttc
     1201 ctggccgagg gcggtcgcgc cgtcggtgag gtcgtgacct cgaccaacgc cgatcggcgg
     1261 cgggtcacct ggacgtacgt ggccgatccg gaaggaaacc tcgtcgagct gcaggcctgg
     1321 tccgaacccg cggactagcc ggatgggcag ggacaccggc gcccaggagg ggccccgggt
     1381 ggcggctccg cgcgaccact tcccccgtcg atcgcgccgg tccgctagtc gccgatcccg
     1441 gggggcccgt cgtcgggctg gatcggaccc atgccagcat acgggtttgg cacgtccgac
     1501 cgctcccgcc agcggcgggg tccatggccg gcatcggaca gctcttcggc gagcgccgca
     1561 accgcctgcc acgtgcgcct cagcaccgca acggccacgc tgaggacggc cttgatgccc
     1621 acgcccctac ccgatgccac cttgcccgtc gatgtgcccg tcatcccagc cgctccccgc
     1681 acgtgtcccg gtaccgttcg gccgctgcct gcgtggtgca gggatcgtgc gctcaccctt
     1741 ccgctcgcgc cagaggcgaa tggcccgatc gcgagccggc aggcgatccc tacaacctga
     1801 ccctcggcgg gctgtcccgg tcgaacatgt ggacggtgtc gacgaagcgg acctgcttgg
     1861 tctggtaggc catcaccagc gagtgggtcc gcgcgccgcc gccgaagaac cgcacgccct
     1921 ggagcaggtc gccggtcgtc acccccgtcg cggcgaagac gaggttgttg cccgacgcga
     1981 ggtcctcggt ccggtagatc cggctctcgt cgccgtggcc catccgcgcg ccgcgggctc
     2041 gctcgtcgtc gctgcggtag cggaaccggg cctggatctc gccgccgagg cagcgcagcg
     2101 cggctgcggt caacacgcct tccggcgcgc cgccgatccc catgaccgcg tggacgcccg
     2161 tcccggacac cgcgcaggag a
//
LOCUS       DATDDI010000490         2478 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_447324, whole genome shotgun sequence.
ACCESSION   DATDDI010000490 DATDDI010000000
VERSION     DATDDI010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447324"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..579
                     /locus_tag="VIU37_07000"
     CDS             <1..579
                     /locus_tag="VIU37_07000"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEY6013735.1"
                     /translation="RVRSHLAGWDPIAGAALAHADGLIRLAGGSLAAAREALERATAG
                     WDERGRIWEATWARLDLVQCLMRSNRYADGAAVLAAVRDTAARLGSEPLAARADELGR
                     FDRGRGIEDEPWRPLTVREFEVARLIAEGLTNGEIGERLDIAPKTASAHVEHILAKLG
                     VARRAEIASWVATVSRSPADGPAGRAGALAAR"
     gene            complement(669..1253)
                     /locus_tag="VIU37_07005"
     CDS             complement(669..1253)
                     /locus_tag="VIU37_07005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013736.1"
                     /translation="MHAVITRRPASRWPMLVAGAVVALTVMIVPVAAAADGQSELSAA
                     RTATARFHTLDAAQAAGYVGLVADLQGITCIADPGGAGGMGVHYLNPSLAPELFDPNA
                     VSSVDAATPELLVYAPGPDGSQRLVALEYLAIKASWDATHSAPPSLFGQTFSTTPAGN
                     RFGLPDFYSLHAWIWDPNPTDLFAPWNPRVSCPG"
     gene            complement(1309..1560)
                     /locus_tag="VIU37_07010"
     CDS             complement(1309..1560)
                     /locus_tag="VIU37_07010"
                     /inference="COORDINATES: protein motif:HMM:NF033706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO4226 family nickel-binding protein"
                     /protein_id="HEY6013737.1"
                     /translation="MAQFMDVHNGFVGVTAQQLKEAHERDLAIEKDEGVHFRTAWLDP
                     ESGKVFCLSSGPSKEAVMRIHERAGHPTAEVYELTVEVQ"
     gene            complement(1871..>2478)
                     /locus_tag="VIU37_07015"
     CDS             complement(1871..>2478)
                     /locus_tag="VIU37_07015"
                     /inference="COORDINATES: protein motif:HMM:NF026049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY6013738.1"
                     /translation="GSSIMPNKKNPDPAELVRGRSARVIGALTASLTLLKGLPLAYQR
                     DLQEDKAPLFDSVAVFGTSLRVLAGLLGTLAVDRERMLAAANEGHTTATAVADALVRR
                     GVPFRAAHHIVGSLVAQAEEAGLRLDGVPDSMVGLALGASGDATAGGLASDPGIGDAL
                     RAAGSIEAALASCDVIGGTAPARVEAALAAARARLDREVAR"
BASE COUNT          324 a          907 c          924 g          323 t
ORIGIN      
        1 cgggtgcgca gccacctcgc gggctgggat ccgatcgccg gcgcggctct cgcccacgcc
       61 gacgggctga tccgcctcgc gggcgggtcg ctcgcggccg cacgcgaggc gctcgagcgg
      121 gcgaccgccg gctgggacga acggggccgg atctgggagg cgacctgggc tcggctcgac
      181 ctggtccagt gcctgatgcg ctcgaaccgg tacgccgacg gggccgcggt cctggccgcc
      241 gtccgcgaca cggcggcgcg cctgggcagc gagccgctcg ccgcccgcgc cgacgaactg
      301 ggacggttcg accgcggccg gggcatcgag gacgagccgt ggcggccgct cacggtgcgc
      361 gagttcgagg tcgcacggct catcgccgag ggcctcacca acggcgagat cggcgagcgc
      421 ctggacatcg cgccgaagac ggcgagcgcc cacgtggagc acatcctggc caagctcggc
      481 gtggcccgcc gggcagagat cgccagctgg gtggcaacgg tgtcacggtc gccggccgac
      541 ggaccggctg ggcgcgccgg cgccctcgcc gcccgctgac cggggcgccg gacccggcga
      601 tcgacgccgc agataggtga acgccggggc cgttgccggc cccggcgtcc cgccctggag
      661 cgagccgctc agcccgggca gctgacccgc gggttccacg gcgcgaacag gtcggtcggg
      721 ttcgggtccc agatccaggc gtggaggctg tagaagtcgg gcaggccgaa gcggttgccg
      781 gccggcgtcg tgctgaacgt ctggccgaag agcgacggcg gcgccgaatg ggtggcatcc
      841 cagctcgcct tgatcgccag gtactcgagc gcgaccaggc gctggctgcc gtccgggccc
      901 ggtgcgtaga cgaggagctc gggggtcgcc gcgtcgaccg acgacaccgc gttcgggtcg
      961 aacagctcgg gggcgaggct cgggttcagg tagtggacgc ccatcccgcc cgctccgcct
     1021 gggtcggcga tgcaggtgat gccctggaga tcggccacga ggccgacgta gccggccgcc
     1081 tgcgcggcgt cgagggtgtg gaagcgggcg gtggcggtcc gggctgcgga cagctccgac
     1141 tggccgtcgg ccgccgctgc cacggggacg atcatgaccg tgagggccac gacggccccg
     1201 gcgacgagca tcggccagcg cgaggccggc cggcgggtga tcactgcgtg catcggttga
     1261 tccttcctgt gttcggtgta ggtcggggac gatgagccgg gcgccggctc actggacctc
     1321 gacggtcagc tcgtaaacct cggcggtggg atggccggcg cgctcgtgga tgcgcatcac
     1381 ggcctccttc gaggggcctg acgacaggca gaacaccttg cccgattcgg ggtcgagcca
     1441 ggccgtccgg aagtggacgc cctcgtcctt ctcgatcgcg agatcgcgtt cgtgcgcctc
     1501 cttgagctgc tgggccgtca ccccgacgaa cccgttgtgg acatccatga actgcgccat
     1561 ccagtgcctc cactcgtctt gccagcggga cggctggcgt cgtggctgca cgatcgcggc
     1621 gcttcgccga tcggtcatcg gtcaggcgac cgatggaccc ccgcgacgac gaccgatgct
     1681 ccggcggcgt ctcccgatca acgtcgacgt ccccgggttc gatcccaagg tccgcctgcc
     1741 cgtggtcgtg ctccagccga cggcggcgct gcgggccggc gtgatcccgg ctccacgtgg
     1801 tcgtcgccac cgcgtgggcg cgcgatccgc acctcgtccg cgacgtcgcg atcgcctcga
     1861 cgaccgagct ctagcgggcg acctcacggt cgaggcgggc gcgcgcggcc gcgagggccg
     1921 cctccacccg ggccggcgcc gtcccgccga tcacgtcgca cgacgccagg gcggcctcga
     1981 tcgagcccgc cgcgcgcaga gcgtcaccga tgcccggatc cgacgcgagc ccacccgcgg
     2041 tcgcgtcgcc actcgcgccg agcgccagcc cgaccatcga atcgggaacg ccatccagcc
     2101 gcaatccggc ttcctccgcc tgcgccacca gcgaacccac gatgtggtgg gcggcgcgga
     2161 acggcacgcc gcgacggacc agtgcgtcgg cgaccgcggt ggccgtggtg tggccctcgt
     2221 tcgccgccgc gagcatccgc tctcgatcca cggccagcgt cccgaggagc ccggccagca
     2281 cccgcagcga cgtcccgaag accgccaccg agtcgaacag cggggccttg tcctcctgga
     2341 ggtcgcgctg ataggccagc ggcaggccct tgagcagggt cagcgacgcc gtcagcgcgc
     2401 cgatcacccg ggccgaccgg ccgcggacca gctcggccgg gtctgggttc ttcttgttcg
     2461 gcatgatcga gctgccgg
//
LOCUS       DATDDI010000491         4381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_198129, whole genome shotgun sequence.
ACCESSION   DATDDI010000491 DATDDI010000000
VERSION     DATDDI010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198129"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..985)
                     /locus_tag="VIU37_07020"
     CDS             complement(<1..985)
                     /locus_tag="VIU37_07020"
                     /inference="COORDINATES: protein motif:HMM:NF015715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEY6013739.1"
                     /translation="MTSLAVRRAHLPFRPVAAAIALAWVIAWFLNLPFAHWLAYDLLG
                     LEAGSHLGDAVAFFVYDVPKVLLLLLGIVTVVSFLRSWFPPERMRAALAGHGTLPATV
                     GAAGFGVVTPFCSCSAVPLFIGFVEAGIPMGVTFAFLISSPMVNEVALVLLWGLFGPG
                     IALLYMATGLAVAIVGGLVLGRLGVERWVEPWVLEVRAGGGATSLALRLSVEQRLRDA
                     WASTCELVRKVLPFVIVGIGVGAFIHGYVPTDLVAQLGGRENPFAVPLVIAIAIPLYS
                     NAAGTIPIVEALLGKGLPLGTTRAFMMAVVAIRLPEFLIRRRVIRARIIALF"
     gene            complement(982..1323)
                     /locus_tag="VIU37_07025"
     CDS             complement(982..1323)
                     /locus_tag="VIU37_07025"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY6013740.1"
                     /translation="MDTATRPQLPVLPEPRLDLPAPDVADAVAAATVLADPTRAAILR
                     LLRDGRHCVCELAAATGQRENNLSNHLARLRDAGLVHASRHEANARFLYYERDEVAIE
                     AMRRALGDVLG"
     gene            1475..2734
                     /locus_tag="VIU37_07030"
     CDS             1475..2734
                     /locus_tag="VIU37_07030"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013741.1"
                     /translation="MTRRTALGPAAPGRPIRLGLRSNLGQFALLVVVNALVGGMIGQE
                     RTVLPLLATDAFGLSGVASALTFVVAFGLAKAVTNLVAGALADRYGRKPVLAAGWLIG
                     LPVPLLIILAPSWPWIVAANVLLGVNQGLTWSTTVIMKIDLVGPARRGLAMGINEAAG
                     YGALAVTALATGWLATANGLRPGPFLLGLAYGVLGLGVSVVLVRETRGHVEHEQRLAG
                     PRAALPWREAFGRTTIRDRSLSAASQAGLVNNLNDGMAWGLLPLYYAAAGLSIGEIGV
                     LAATYPGVWAVCQVGTGALSDRIGRKPLIVVGMLFQAVAIAGIAVGSGFGVWLAAAAV
                     LGVGTAMVYPTLLATIADVADPSWRGAAIGVYRLWRDLGFAIGALVAGVVADLLGMPA
                     AILAVAGLTAASGLIVFLRMRETLIRG"
     gene            complement(2741..3118)
                     /locus_tag="VIU37_07035"
     CDS             complement(2741..3118)
                     /locus_tag="VIU37_07035"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY6013742.1"
                     /translation="MNELLDAARARLDRLAPTAAQQAAERGAIVVDTRCAEQRRETGV
                     IPGSVHVPLSVLYWRLDPASGFEDSRLADPERQVILVCAHGYSSSLAAATLQDLGFAQ
                     ATDIAGGFEAWQAAGLPIEAAPD"
     gene            3285..3962
                     /locus_tag="VIU37_07040"
     CDS             3285..3962
                     /locus_tag="VIU37_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002068740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013743.1"
                     /translation="MDPHPALRVLVVDDEPPIVDLVRGYLEREGWEVLTAPDGREGLE
                     LARREQPDVVILDLMLPGLDGVEACRELRTFSNAFVVMLTARSEEIDKLVGLAVGADD
                     YLTKPFSPRELVARIKAILRRARVATPAAPGLDVDVARRVARVDGQAVQLTRTEFEIL
                     AALVREPGSVVERAALLASVWGPGYDDDHLVDVHVANLRRKLGDNPDHPRFVETVRGV
                     GYRLAGS"
     gene            3995..>4381
                     /locus_tag="VIU37_07045"
     CDS             3995..>4381
                     /locus_tag="VIU37_07045"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY6013744.1"
                     /translation="MLSHLVVALAALGTVLVGVSLVGPGYFADAMGHGPGDPQGQAMD
                     AATLAAFQDAVRTAMLAALVIALLAAVIVALALSSRIATPVTRLVEAAGRIAGGHYAE
                     RVPAAGESEIAELAATFNAMAGSLEAT"
BASE COUNT          598 a         1534 c         1625 g          624 t
ORIGIN      
        1 cgaacagggc gatgatccgg gcgcggatga cgcgccgccg gatgaggaac tcgggcagtc
       61 tgatggcgac gacggccatc atgaacgcgc gtgtcgtgcc gagcggcagg cccttgccga
      121 ggagggcctc gacgatcggg atggtccccg cggcgttcga gtagagcggg atcgcgatcg
      181 cgatcaccag cggcacggca aacgggttct cgcgcccgcc gagctgcgcg acgaggtccg
      241 tgggtacgta gccgtggatg aaggcgccga cgccgatccc cacgatgacg aaggggagca
      301 ccttgcggac gagctcgcac gtggacgccc aggcgtcgcg gaggcgttgt tcgacggaca
      361 ggcgcagggc cagcgacgtc gccccgccgc cggctcggac ctcgagcacc cacggctcga
      421 cccagcgttc gacaccgagt cggcccagga cgaggccgcc gacgatcgcg accgcgagac
      481 ccgtcgccat gtagagcagg gcgattccgg gtccgaacag gccccacagc aggaccagcg
      541 ccacctcgtt gaccatgggg ctgctgatga ggaacgcgaa ggtcacgccc atcgggatgc
      601 cggcttcgac gaagccgatg aacagcggaa cggccgagca ggaacagaac ggcgtcacga
      661 cgccgaagcc cgccgcgccg acggtcgccg gcagcgtgcc gtggccggcc agcgcggcac
      721 gcatccgctc cggggggaac caggaccgca ggaaggacac gaccgtcacg atgccgagca
      781 gcaggagcag gaccttgggc acgtcgtaga cgaagaaggc gacggcgtcg ccgagatggc
      841 tgccggcctc gagcccgagc aggtcgtagg ccagccagtg ggcgaacgga aggttgagga
      901 accaggcgat gacccaggcc agggcgatgg cggcggccac cggcctgaac ggcaggtgcg
      961 cgcggcgcac cgcgagtgac gtcatccgag gacatccccc agcgcccggc gcatcgcctc
     1021 gatcgcgacc tcgtcgcgct cgtagtagag gaaccgggcg ttggcttcat ggcggctcgc
     1081 gtggacgagg ccggcgtcgc ggagccgggc gaggtggttg ctcaggttgt tctcgcgctg
     1141 gccggtggcc gccgccagct cgcacacgca atggcggccg tcacggagga gccgcaggat
     1201 ggccgcccgg gtgggatcgg cgaggacggt ggcggccgcc accgcgtccg cgacgtcggg
     1261 ggccggaaga tcgagcctcg gctcgggcag cacgggaagc tggggtcggg tggcagtgtc
     1321 cacccatgga acatctcacc tgtgactgag atgtggcatc tgccgaacgt caccaaccgc
     1381 gggccatcca acctgcggtc gacccgctga ccctggggct tgatactccg cgcatgcacc
     1441 tcggcatcct cggttgcgag ccgccaggcc cgtcttgacc cgccggacag ccctcgggcc
     1501 cgccgccccc ggacgaccga tccgcctcgg gcttcgctcg aacctcggac agttcgccct
     1561 gctcgtcgtc gtcaacgcgc tcgtcggcgg gatgatcggg caggagcgga ccgtcctgcc
     1621 gctgctcgcg acggacgcct tcggattgag cggggtcgcg tcggcgctca ccttcgtcgt
     1681 cgccttcggg ctggccaagg cggtcaccaa cctggtcgcc ggcgcgctcg ccgaccggta
     1741 cggtcgcaag ccggtgctgg cggccggctg gctcatcggc ctgcccgtgc cgctgctgat
     1801 catcctcgcg ccgtcgtggc cctggatcgt cgccgcgaac gtgctgctcg gcgtgaacca
     1861 gggcctgacc tggtcgacga ccgtgatcat gaagatcgac ctcgtcggcc cggcccgtcg
     1921 cggcctcgcg atggggatca acgaggcggc cgggtacggg gcgctggccg tgaccgcact
     1981 ggccaccggc tggctggcca cggcgaacgg gctccggccg gggcccttcc tgctcgggct
     2041 cgcgtacggg gtgctgggtc tcggggtttc ggtggtcctc gtccgcgaga cgcgcggtca
     2101 cgtggagcac gagcagcgcc tcgccggacc ccgtgcggcc ctgccgtggc gcgaggcgtt
     2161 cgggcggacg acgatccgtg atcgcagcct gtcggcggcg tcacaggcag ggctggtcaa
     2221 caacctcaac gacgggatgg cctggggcct gctcccgctg tactacgcgg ccgcgggtct
     2281 gtcgatcggg gagatcggcg tcctggccgc gacctacccg ggggtctggg cggtctgcca
     2341 ggtcgggacg ggcgcgctgt cggacaggat cggccgcaag ccgctcatcg tcgtcgggat
     2401 gctcttccag gcggtggcga tcgcgggaat cgcggtgggt tcgggcttcg gcgtgtggct
     2461 cgccgcggcc gcggtgctcg gcgtcgggac ggcgatggtc tacccgacgc tgctggcgac
     2521 catcgccgac gtcgccgatc cgtcctggcg cggcgcggcg atcggcgtgt accgactctg
     2581 gcgtgatctc gggttcgcga tcggcgcgct ggttgccggc gtcgtggccg accttctcgg
     2641 gatgccggcg gcgatcctgg ccgtcgcggg gctcaccgcg gcctcgggcc tgatcgtgtt
     2701 cctccgcatg cgcgagacgc tgatccgcgg ttgaccccgg tcagtccggc gccgcctcga
     2761 tcggcaggcc cgcggcctgc caggcctcga acccaccggc gatgtccgtc gcctgggcga
     2821 agccgaggtc ctgcagcgtc gccgccgcga ggctcgacga gtagccgtgg gcacagacga
     2881 ggatgacctg gcgctcggga tcggccaacc gtgagtcctc gaaccccgac gcaggatcga
     2941 gtcgccagta caggaccgac agcggcacgt ggaccgagcc cgggatcacg ccggtctcgc
     3001 ggcgctgctc ggcgcaccgc gtgtcgacca cgatcgcgcc gcgctccgcg gcctgctgcg
     3061 ccgcggttgg tgcgaggcgg tcgagtctcg ctcgggccgc gtcgagcagt tcgttcacgg
     3121 agcggcgatc gggcaacgtc tcctcctgtc cggctgattg tcgggtcccg ggtcaacatc
     3181 gttgcgcgga cggtgccgaa cggcccgtat tgcgggccgt ccgaccgggc cattggtccc
     3241 gtcgggctct tgcgaaccct cgcccggaca gcgaaccttc gcccatggat ccgcatcccg
     3301 cgctgcgcgt cctcgtggtc gacgacgagc ccccgatcgt cgatctcgtg cgtggctacc
     3361 tggagcgcga gggctgggag gtcctgacgg caccggacgg gcgggaagga ctcgagctcg
     3421 cccggcgcga gcagcccgac gtcgtgatcc tcgacctgat gctgccgggt ctcgatggcg
     3481 tcgaggcctg ccgcgagctc cgcacgttca gcaacgcgtt cgtcgtgatg ctgaccgccc
     3541 gatcggagga gatcgacaag ctcgtgggac tggccgtggg cgcggatgac tacctgacca
     3601 agccgttcag cccgcgcgag ctggtcgccc gcatcaaggc gatcctgcgc cgggcgcggg
     3661 tcgcgacgcc ggccgccccg ggcctggacg tggacgtcgc acggcgcgtc gcccgggtcg
     3721 acggccaggc ggtccagctg acccgaaccg aattcgagat cctcgcggcg ctcgtccgcg
     3781 aacccggcag cgtcgtcgag cgagccgctc tcctggcgtc cgtctggggt cccggctacg
     3841 acgacgacca tctcgtcgac gtccacgtcg ccaacctgcg ccggaagctg ggtgacaacc
     3901 cggaccaccc gaggttcgtc gagaccgtgc gcggcgtggg ctaccgcctc gcgggaagct
     3961 gatgcgactg cctcgccgcc tccgctcgcg actggtgttg tcgcacctcg tcgtggccct
     4021 ggccgcgctc gggacggtgc tggtcggcgt ctccctcgtc ggccccggct acttcgccga
     4081 cgccatgggc cacggacccg gggatccgca gggccaggcc atggacgcgg ccacgctggc
     4141 ggcgttccag gacgcggtcc ggaccgcgat gctggctgcg ctggtcatcg ccctgctcgc
     4201 cgccgtgatc gtcgcgctcg cgctctcgtc gcggatcgcc acgccggtga cgcgcctggt
     4261 ggaggcggcg gggcggatcg ccggcggtca ctacgcggaa cgcgtgccgg cggcagggga
     4321 gagcgagatc gccgagcttg ccgcgacgtt caacgcgatg gccgggtcgc tcgaggcgac
     4381 c
//
LOCUS       DATDDI010000492         1848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_551991, whole genome shotgun sequence.
ACCESSION   DATDDI010000492 DATDDI010000000
VERSION     DATDDI010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551991"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VIU37_07050"
     CDS             complement(<1..732)
                     /locus_tag="VIU37_07050"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013745.1"
                     /translation="MTSGVVAASPGPLEEPPSGALTVFRNGAFLRLWLSQAATQVGGN
                     MVLYGLTVIVVNSTRSNTAVSLLILTFLVPAVVFSAVAGVYVDRIDRRLILVATNVLR
                     AISFIALYLVGTNLALILVLNVAVSTITVFFAPAEAAMIPVLLPRAQLLAANGIFTLT
                     LNAAFALGFALLGPLVVNVASPETVILVVAALYLLAAVFCFTLPPSPPGNVQAEGDAR
                     RLGAAVVGETERAVGSIVAQLREGLE"
     gene            complement(729..980)
                     /locus_tag="VIU37_07055"
     CDS             complement(729..980)
                     /locus_tag="VIU37_07055"
                     /inference="COORDINATES: protein motif:HMM:NF017879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HEY6013746.1"
                     /translation="MPDTPVLMLLLGDVVRLGRRHPCGGDTWLVDRLGADIGLRCQGC
                     GRHVLLERRLVERRLVAFLSRGDPRLSAAVVPPARDATT"
     gene            complement(997..1674)
                     /locus_tag="VIU37_07060"
     CDS             complement(997..1674)
                     /locus_tag="VIU37_07060"
                     /inference="COORDINATES: protein motif:HMM:NF017734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF881 domain-containing protein"
                     /protein_id="HEY6013747.1"
                     /translation="MHRRSSQLTIAAVAVALGLLVVVQLRSQAGVGGGLAQLSAQDLT
                     ALVANQNARNDQLRGEVSSLERELGTLNQNAARGEVSVDELRSELSRIRAYAGLDPVG
                     GPGVTISISGPIDGFGVEELINELRNAGAEAIGTGGVRVVTGVVVTGAPGEVAVDGTR
                     LGDSFELAAIGAPDKLTGSLTRSGGIIAQLAATEPDVTVTVTPVDRIELPATVRDLVP
                     AHGHPRL"
BASE COUNT          299 a          662 c          672 g          215 t
ORIGIN      
        1 ctccagccct tcgcgcagct gggcgacgat cgaaccgacg gcgcgctcgg tctcccccac
       61 cacggccgca cccagccggc gcgcgtcgcc ttccgcctgg acgttgcccg ggggcgacgg
      121 cgggagggtg aagcagaaca cggccgccag gaggtacagc gcggccacca ccaggatgac
      181 cgtctccggg ctggccacgt tgaccacgag cggcccgagc agggcgaacc cgagggcgaa
      241 cgccgcattg agcgtgagcg tgaagatccc gttggcggcc aggagctggg cgcgcggcag
      301 caggactggg atcatcgccg cctcggcggg cgcaaagaag accgtgatcg tcgagaccgc
      361 gacgttgagc accaggatca acgcgaggtt ggtaccgacc aggtagagcg cgatgaacga
      421 gatcgcccgc agcacgttgg tcgcgaccag gatcagccgc cgatcgatcc ggtcgacgta
      481 gacgccggcg accgccgaga agaccaccgc cggaaccagg aaggtcagga tcagcaggct
      541 gaccgccgtg ttcgaccgcg tcgagttcac gacgatgacc gtcagcccgt acaggaccat
      601 gttgccgccg acctgggtcg cggcctgcga cagccacagg cgcaggaagg caccgttcct
      661 gaagaccgtg agcgcgcccg acggcggctc ctcgagcggg cctggagacg ccgccacgac
      721 ccccgacgtc atgtggtcgc gtcccgggcc ggggggacga ccgccgcgct caggcgcggg
      781 tccccgcgcg acaggaacgc cacgagccgg cgttccacga ggcggcgttc cagcaggacg
      841 tgccggccgc agccctggca acgcaggccg atgtcggcgc cgagccggtc gacgagccac
      901 gtgtcaccgc cgcagggatg ccgccgaccg aggcggacga cgtcgccgag aagcagcatg
      961 agcacggggg tgtcgggcat cgggccggtc agggtatcaa aggcgcggat gcccgtgtgc
     1021 cgggacgagg tcccggaccg tggcgggcag ctcgatccga tcgaccggcg tgaccgtgac
     1081 cgtgacgtcg ggttcggtgg ccgcgagctg ggcgatgatc ccgcctgaac gcgtcagcga
     1141 cccggtcagc ttgtccggcg ctccgatcgc ggcgagctcg aacgagtccc ccagtcgcgt
     1201 cccgtccacg gcgacctcgc ccggagctcc ggtgaccacc acgccggtga cgacccggac
     1261 cccgccggtc ccgatcgcct cggcgccggc gttgcgcagc tcgttgatga gctcttccac
     1321 gccgaagccg tcgatcggtc cgctgatcga gatcgtcacc cccgggccgc cgaccggatc
     1381 gagcccggcg taggcgcgga tccggctgag ctcggagcgc agctcgtcca cggacacctc
     1441 gccacgggcg gcgttctggt tgagcgtgcc gagctcgcgc tcgagcgacg agacctcgcc
     1501 gcgcagctgg tcgttgcgcg cgttctggtt ggcgacgagc gccgtcaggt cctgcgccga
     1561 cagctgggcg aggccgccgc ccacccccgc ctgtgagcga agctggacga ccacgagcag
     1621 cccgagggcg acggcgaccg ccgcgatcgt gagctgactc gagcgccggt gcacggtcag
     1681 ttcccggacg gcgccgaggt cgccgtgggc gaggcgatcg gccgcgagta gcgaagcgtc
     1741 accgtgccga cgaacgcggg cacgtccacc gagggcggct cggcgaacga cagccggatc
     1801 ccgtaaccct ccgcccgcgc ccggacgaag tcgatgaagc cgcgctcg
//
LOCUS       DATDDI010000493         5826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_489460, whole genome shotgun sequence.
ACCESSION   DATDDI010000493 DATDDI010000000
VERSION     DATDDI010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5826
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489460"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..787)
                     /locus_tag="VIU37_07065"
     CDS             complement(<1..787)
                     /locus_tag="VIU37_07065"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY6013748.1"
                     /translation="MKPLRIALGQIAPRLGALDVNLERHRTLLGEARERGAALVVFPE
                     LGLTGYQLQDLAAEVAMRLDDPRLDELAAATRGLSAVVSFVEESADHRLFIAAGLFED
                     GELRHVHRKLFLPTYGLFDERRFFAQGDRVRAVPSRLGVGIGIGICEDFWHLSLPQLL
                     ALDGAQILINVSSSPGRDLAATNEVGLGTATSWRTLMRTYAQLTTSFVVFCNRVGVDE
                     SISFWGGSEVIAPSGAAVFSAPLYDEGLFVCEINAGDIRRERVA"
     gene            962..2746
                     /locus_tag="VIU37_07070"
     CDS             962..2746
                     /locus_tag="VIU37_07070"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6013749.1"
                     /translation="MTRSPKWSPRIAVLATTAALVFAACGSSTASTAPSVAPASETPA
                     SEAPASASAEAFTPMVYPETGEAPCGQAAAPDATHGAYTGNFKKITAVDAKTGVFDLC
                     NPDVAFLAKVAFSSFAINDTAWLQAKIDPTKPDNQAIVSEVNGTGPYKLDSWNRGSDI
                     TMVRNDNYWGTKALTDKLIFRWSSEAAQRLVELLSPTVDGIDNVGPTDFDTVKNNPDL
                     QLKEREGLNTFYIGFNNTYAPFDNEKVRQAIAMGIDRQRIVDNFYPPGSSVATHFTPC
                     AIPNGCAGEDWYEYDPAKAKQLLADAGFPNGFDTVINYRDVVRGYLPDPKVVATDIQA
                     QLKANLGINAKIEVQESGTFLDNAAAGKLTGIHLLGWGADYPDITNFLDYHFGAGASK
                     QFGNKFDDITSALTTGGQGANDDARKPAYEAANNAIKQHVPMIPVAHGGSAVAYRADV
                     ENAHASPLTSEYFAVMKPADRTQFVFMQNAEPPGLYCADETDGESLRVCEQMTESLYR
                     YEVGGTAAVPALATECKPNAELTQWTCTLHDGVTFHDGSTLDANDVVMSYAVQWDADN
                     PLHKGRTGDFTYFPGLFGGFLNPPVPAE"
     gene            2849..3925
                     /locus_tag="VIU37_07075"
     CDS             2849..3925
                     /locus_tag="VIU37_07075"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013750.1"
                     /translation="MTRFIVRRLLSSIPVLIGIIVLVFVLVRIIPGEPCTAAYGEKAT
                     PVICAAFTARYGLDKPLPEQFVIYAGSLVQGDFGNSIRYGRPVADILLERLPVTVELT
                     IVALLFATVVGVLLGLVSATRRNSPVDAGTMVIANLGVSTPVFVLGLLLAFVFAVLLK
                     NTPFALPPSGRLTPGVEVVPLATVWGLTGLAGPPRAILDFISNMYVLNGLLTLNFSLL
                     GDALRHLLLPAVAVGTIPLAIVARMTRSSLLEVLGLDYVRTARAKGLKERSVVVRHGM
                     RNALLPVVTVIGLSLGGFLSGAVLTETIFNLTGMGKTLFESIQSRDYIVIQGVTVVVA
                     LIYLVVNLIVDISYAFLDPRIRLS"
     gene            3922..4878
                     /locus_tag="VIU37_07080"
     CDS             3922..4878
                     /locus_tag="VIU37_07080"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013751.1"
                     /translation="MSLNPGSAEALAAGPPDAMATQRSASLTRDTIRNIIRQRSALIG
                     LTILIALFLIAIFAPFIAPTNPDTSMLDLGEPGKRGAAPCVHLFGCAANLPQHLMGLD
                     SNLRDEFSRVIFGARVSLPMGFLTVGFAIIIGTIIGAIAGFAGGWADNVLMRIMDIVL
                     SFPSLILAIAIVTVLGAGLFNALLAIGIVSIPVYARVMRASVLSVREADFVTASRALG
                     ESSGGLLARRVLPNALTPLIVQGTLGIGGAILEVAALSFVGLGNQPPTAEWGSMIAGD
                     RNLFFSAPHLIFFPGLAITLSVLGFNLLGDGIRDALDPRLNR"
     gene            4898..>5826
                     /locus_tag="VIU37_07085"
     CDS             4898..>5826
                     /locus_tag="VIU37_07085"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013752.1"
                     /translation="MTDPIVKPTSVPDHTLGASLDETVVSELVPPGARRARRPRGDRP
                     LVEIKGLRTSFATRDGAVKAVDGIDFHVDRGEIMGLVGESGCGKSVTALSIMRLIAKP
                     GRIDAGEIMFDGQNLLTLSDESMRKVRGNRISMIFQQPTSSLNPVWNVGRQIEEVLQI
                     HRGMKGTAAEARALELLRMVGIPDPERRLKAFPHEMSGGMAQRVMIAMALACEPELLI
                     ADEPTTALDVTIQAQILDLIRNLRDETGTAIILITHDLGVVAEMCDRVAVMYAGEIVE
                     HTDVATLFREPRHPYTQGLIGSIPVVGEVRDELA"
BASE COUNT          930 a         2116 c         1889 g          891 t
ORIGIN      
        1 gggcgacacg ctcgcggcgg atgtcgcctg cgttgatctc gcagacgaac aggccctcgt
       61 cgtagagcgg cgcgctgaag accgcggcgc cggacggcgc gatgacctcc gagccgcccc
      121 agaacgagat cgactcgtcg accccgacgc ggttgcagaa gacgacgaac gacgtggtga
      181 gctgggcgta cgtccgcatc agggttcgcc acgacgtcgc ggtaccgagc ccgacctcgt
      241 tggtcgccgc caggtcccgc cccggcgacg acgagacgtt gatcaggatc tgcgcgccat
      301 cgagcgccag gagctgcggc agcgacaggt gccagaagtc ctcgcagatg ccgatcccga
      361 tccccacccc gagccgcgat ggcaccgcgc gcacgcggtc gccctgggca aagaaccggc
      421 gctcgtcgaa cagcccgtag gtcggcagga acagcttccg atggacgtgc cgcagctcgc
      481 cgtcctcgaa caggccggcc gcgatgaaca ggcggtgatc ggccgactcc tcgacaaagg
      541 agacgaccgc cgacaggccc cgcgtcgcgg cggccagctc gtccagccgc gggtcgtcaa
      601 ggcgcatcgc gacctccgcc gcgaggtcct gcagctggta gccggtcagc ccgagctccg
      661 ggaacacgac gagggccgcg ccgcgttcgc gcgcctcgcc caggagcgtc cggtgtcgct
      721 cgagattgac atcgagcgcg ccgagccgcg gggcgatctg gccgagggca attcgcagcg
      781 gtttcacgcg caggagcata cgcgacgggc ctcgtcgcgg gctggcgatc gggttccgtg
      841 ggtgctaggc ttccgggcac ccgcgccgcc cctggcgtgc gcggtcgcgc tccgcccccg
      901 aaggcccgga ttgggaggca agacggaccg ggcgaggggc tcaagtggag gagttgggag
      961 tatgacccga tcacccaagt ggtcgccacg gatcgcggtg ctcgccacga cggctgcgct
     1021 cgtcttcgca gcctgcggca gcagcaccgc ctcgacggcg cccagcgtcg cgccggccag
     1081 cgagacgccg gccagcgagg cgccggcctc ggcctccgcc gaggcgttca cgccgatggt
     1141 ctacccggag accggtgagg ccccctgcgg ccaggccgcg gctccggacg cgacacatgg
     1201 cgcctacacc ggcaacttca agaagatcac ggcggtcgac gcgaagaccg gcgtcttcga
     1261 tctctgcaac cccgacgtcg ccttcctggc caaggtcgcg ttcagctcgt tcgcgatcaa
     1321 cgacacggcc tggctgcagg ccaagatcga ccccaccaag ccggacaacc aggcgatcgt
     1381 ctccgaggtc aacgggaccg gcccgtacaa gctggactcg tggaaccgcg gctcggacat
     1441 cacgatggtc cgcaacgaca actactgggg caccaaggcg ctcaccgaca agttgatctt
     1501 ccgctggagc tccgaagcgg cccagcgcct ggtcgagctc ctgtcgccga ccgtcgacgg
     1561 tatcgacaac gtcgggccga ccgacttcga caccgtcaag aacaacccgg acctccagct
     1621 caaggagcgc gagggcctca acaccttcta catcggcttc aacaacacct acgcgccgtt
     1681 cgacaacgag aaggtccgcc aggcgatcgc aatgggcatc gaccggcagc ggatcgtcga
     1741 caacttctac ccgccaggat cgtccgtcgc cacgcacttc accccgtgcg ccatcccgaa
     1801 cggctgcgcc ggtgaggact ggtacgagta cgacccggcc aaggccaagc agctgctggc
     1861 cgacgcgggc ttcccgaacg gcttcgacac cgtcatcaac taccgcgacg tcgtccgcgg
     1921 ctacctgccc gacccgaagg tcgtggcgac cgacatccag gcgcagctca aggccaacct
     1981 gggcatcaac gccaagatcg aggtccagga atccgggacc ttcctcgaca acgctgccgc
     2041 gggcaagctg accggcatcc acctcctcgg ctggggcgcc gactatccgg acatcaccaa
     2101 cttcctcgac tatcacttcg gcgccggcgc ctcgaagcag ttcgggaaca agttcgacga
     2161 catcacctcc gccctgacga cgggcggcca gggcgccaac gacgacgcgc gcaagccggc
     2221 gtacgaggcg gccaacaacg cgatcaagca gcacgtcccg atgatcccgg tcgcgcacgg
     2281 cggttccgcc gtcgcctatc gggcggacgt cgagaacgcg catgcctcgc cgctgacgag
     2341 cgagtacttc gcagtcatga agccggccga ccggacacag ttcgtgttca tgcagaacgc
     2401 cgagccgcca ggactgtatt gcgccgacga gaccgacggt gagtcgctcc gcgtctgcga
     2461 gcagatgacc gagtcgctgt accgctacga agtcggtggc acagcagcgg tcccggccct
     2521 ggccaccgag tgcaagccga acgccgagct gacccagtgg acgtgcacgc tgcatgacgg
     2581 cgtgaccttc cacgacggct ccacgctcga cgccaacgac gtggtcatgt cgtacgcggt
     2641 ccagtgggat gcggacaatc cgctccacaa gggccggacc ggcgacttca cgtacttccc
     2701 cggcctgttc ggtgggttcc tcaacccgcc ggtcccggcc gagtaagtcg agcgcgactt
     2761 cgaacgccga agggcgccgc caccggcggc gcccttcggc taacccctcc acggaccacc
     2821 gtccgccccc gccaaaggcc ctgaacggat gacccggttc atcgttcgcc gactgctctc
     2881 gagcatcccg gtcctgatcg ggatcatcgt cctcgtgttc gtgctcgtcc ggatcatccc
     2941 gggtgagccg tgcacggccg cctacggtga gaaggcgacc ccggtcatct gtgctgcctt
     3001 cacggcccgc tacggcctgg acaagccgct cccggagcag ttcgtgatct acgccggctc
     3061 gctcgtccag ggggacttcg gcaactcgat ccggtacggc cggcccgtcg ccgacatcct
     3121 gctggagcgc ctgcccgtca ccgtcgagct gacgatcgtc gccctcctgt tcgcgacggt
     3181 cgtcggggtc ctgctgggtc tcgtctcggc gacccggcgc aactccccgg tcgacgccgg
     3241 cacgatggtc atcgccaacc tgggcgtctc gaccccggtc ttcgtcctcg gcctgctgct
     3301 ggcgttcgtg ttcgccgtcc tgctcaagaa cacgccgttc gcgctgcccc catcgggccg
     3361 cctgacgccg ggcgtcgagg tggtgccgct ggccacggtc tggggcctga ccggcctggc
     3421 cgggccgccg cgggcgatcc tcgacttcat ctcgaacatg tacgtcctca acgggcttct
     3481 gaccctcaac ttcagcctgc tcggcgacgc cctccggcac ctgctcctgc cagccgtggc
     3541 ggtcggtacg atcccgctcg cgatcgtcgc gcggatgacc cggtccagcc tgctcgaggt
     3601 gctcggcctc gactacgtcc ggaccgcccg ggccaagggc ctcaaggagc gctccgtcgt
     3661 cgtccggcac ggcatgcgca acgcgctgct gccggtcgtg accgtgatcg ggctctcgct
     3721 cggcggcttc ctctcgggcg ccgtcctgac cgagaccatc ttcaacctga ccggcatggg
     3781 caagacgctg ttcgagtcga tccagagccg cgactacatc gtcatccagg gcgtcacggt
     3841 cgtggtcgca ctgatctacc tggtcgtgaa cctcatcgtc gacatctcgt acgcattcct
     3901 cgatccacgg atccgcctgt catgagcctg aaccccggca gcgccgaggc cctcgcggcg
     3961 ggaccgcccg atgcgatggc cacgcagcgc tcggcatcgc tgacccgcga caccatccgc
     4021 aacatcattc gccagcgctc ggcgctgatc gggctgacga tcctgatcgc cctgttcctg
     4081 atcgcgatct tcgcgccgtt catcgccccg accaacccgg acacgtcgat gctcgacctg
     4141 ggcgagccgg gcaagcgcgg cgcggcgccg tgcgtccacc tgttcggttg tgcggccaat
     4201 ctgccccagc acctgatggg gctcgactcg aacctgcgcg acgagttcag ccgggtgatc
     4261 ttcggtgcca gggtctcgct gccgatgggc ttcctgacgg tcggcttcgc gatcatcatc
     4321 gggacgatca tcggggcgat cgccgggttc gcgggcggct gggccgacaa cgtcctgatg
     4381 cggatcatgg acatcgtcct gtcgttcccg agcctgatcc tcgcgatcgc catcgtgacc
     4441 gtcctcggcg ccgggctgtt caacgcgctg ctggcgatcg gcatcgtgtc gatcccggtc
     4501 tacgcgcgcg tcatgcgcgc atcggtgctg tccgtgcggg aggcggactt cgtgaccgcg
     4561 tcacgtgccc taggcgaatc atccggcggg ctgctcgcca ggcgggtcct ccccaatgcg
     4621 ctcaccccgc tgatcgtcca gggcacgctc ggcatcggcg gcgccatcct cgaagtcgcc
     4681 gcgctgtcgt tcgtcgggct cggcaaccag ccgccgaccg ccgagtgggg ctcgatgatc
     4741 gcgggcgatc gcaacctgtt cttctctgcg ccgcacctga tcttcttccc gggcctcgcg
     4801 atcacgctgt ccgtgctcgg gttcaatctc ctcggcgacg gcatccgcga cgccctggac
     4861 ccgaggctga atcgatgagc gtgcgggagg cggaagcgtg acggacccga tcgtcaagcc
     4921 gacgtccgta ccggaccaca ccctgggtgc gagcctcgac gagaccgtcg tctccgagct
     4981 cgtgccgccg ggcgcccgcc gcgcgcgccg gccgcgcggc gaccggccgc tcgtcgagat
     5041 caagggcctg cgcacgagct tcgcgacgcg tgacggcgcg gtcaaggccg tcgacgggat
     5101 cgacttccat gtcgaccgcg gcgagatcat gggtctcgtc ggcgagtccg gctgcggcaa
     5161 gagcgtcacg gcgctgtcga tcatgcggtt gatcgccaag ccgggccgga tcgacgccgg
     5221 cgagatcatg ttcgatgggc agaacctgct gaccttgagc gacgagtcga tgcgcaaggt
     5281 tcgcggcaac cggatcagca tgatcttcca gcagccgacg tcgtcgctca acccggtctg
     5341 gaacgtcggt cgccagatcg aggaggtcct ccagatccac cgcgggatga agggcacggc
     5401 cgccgaggcc cgggccctgg agctgctgcg gatggtcggc atcccggatc cggagcggcg
     5461 gctcaaggcc ttcccgcacg agatgtcggg cgggatggcc cagcgcgtga tgatcgcaat
     5521 ggcgctggcc tgcgagccgg agctgctcat cgccgacgag ccgacgaccg cgctcgacgt
     5581 gacgatccag gcccagatcc tcgacctcat ccgcaacctg cgcgacgaga ccgggacggc
     5641 gatcatcctg atcacgcacg acctgggcgt ggtcgccgag atgtgcgatc gggtggcggt
     5701 catgtacgcc ggcgagatcg tcgagcacac tgacgtggcc accctcttcc gcgaaccccg
     5761 ccacccgtac acgcagggcc tcatcggctc gatccccgtc gtgggcgagg tgcgcgacga
     5821 gctcgc
//
LOCUS       DATDDI010000494         3788 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_427168, whole genome shotgun sequence.
ACCESSION   DATDDI010000494 DATDDI010000000
VERSION     DATDDI010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427168"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1152)
                     /locus_tag="VIU37_07090"
     CDS             complement(<1..1152)
                     /locus_tag="VIU37_07090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013753.1"
                     /translation="MARARPLVAAAMLAAVLVGLPSPARPVPVTAAPLRIDSAPLVGT
                     AAIVPGSVNRSSLDLDATYRATLKLSWGTRAIWVDSTATVRNTSGGPIDRVELNTIAA
                     RLGGMRLRPVTVDGTGVAASVSDQTIVVPLGGILPAGATTVVRVRYSARLRTGTAGSD
                     WLFARANGIADLYRWLPWVSRRIAFDRPNHGDPFETPTSPSVRVTVVADRRLVLATTG
                     DRVSASADGLTQVFEAHGVRDFTVTAATDYRSVARQVGQTTIRAWYRPGTNGAALLDA
                     AVRAFTALQARLGPYGYDTFKVVQSAGGFGMESPELIWIPSLSSPNLRYQVAHETAHQ
                     WFYGIVGNDQAREPFADEAAADVVARDVMGLRRASRCPTARLDRSIYDYS"
     gene            1208..2608
                     /locus_tag="VIU37_07095"
     CDS             1208..2608
                     /locus_tag="VIU37_07095"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6013754.1"
                     /translation="MTAPSLPDAGADLLVEAIRSRLPDLRLLTDEIDRESYRRDETAY
                     LPAGLPCAVALPTTTQQVAELVRICGELRVPIVPRGAGSGLSGGAAGIEGALTIAFTA
                     MNRILEIDRENLVAVVQPGVVNATLKAAVSEVGLFYPPDPASYETCSIGGNLGTNAGG
                     LCCVKYGQTRESVLSLEVVMADGTVIRTGGRNLKDVAGYSLTHLLVGSQGTLGLITEA
                     TLRLRPAPPPRSTMLAFFPTLDGAGEAVAGMAAAGLAPVTLELLDRFTIAAVDDMHDL
                     GLDRSAAAMLMVESDLPGSAAGDELARAETACRVAGATDVIRAADAQEADWLRQARRA
                     AHYALERLGEVRMEDVGVPRSRVPDLLRAIERIAATHDVRIGTFGHIGDGNLHPDLVF
                     DRGDPRAEAVTKLVQADLYRAALELGGTVTGEHGIGAARRDWLEVQRGADAVRFMRAI
                     KAALDPLGILNPGRVI"
     gene            2797..>3788
                     /locus_tag="VIU37_07100"
     CDS             2797..>3788
                     /locus_tag="VIU37_07100"
                     /inference="COORDINATES: protein motif:HMM:NF025585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4331 family protein"
                     /protein_id="HEY6013755.1"
                     /translation="MPTVKISRLASVAVAAVILAIGVAPLGIWAADHLDSPTVSASGA
                     TDLTDIYAFSTNDAKKTVLIANVNPGAGVLPNSTTSFGTGVQYKITVDTNGDAVPNLT
                     YLLRFTAGNPQGVTIWRNGKLWGSGRTGHPIVLAGGTKLWAGLRDDPFFFDLDAFKGN
                     ILGADNGRKLCDAQKVDFFKGLNVSSIVLMVPNAELGGNGKTVGVSANTSVLKGGQWV
                     QVDQMGRPGFNTVFNNHLVAGDASVNSVKELFNRTVPAEQSSLGFKANVIATLKAVST
                     AFEHPYTDQQASDLADVLVPDLLTYKVGDKTGFLNGRRLGDDVIDTLLAVGANTP"
BASE COUNT          560 a         1387 c         1317 g          524 t
ORIGIN      
        1 ggaatagtcg tagatcgacc gatcgagccg ggccgtcgga caacggctcg cccggcgcag
       61 ccccatgacg tcccgcgcca cgacgtccgc ggccgcctcg tccgcgaacg gctcccgcgc
      121 ctggtcgttc ccgacgatcc cgtagaacca ctggtgagcc gtctcgtggg cgacctggta
      181 gcgaaggttc ggggacgaca ggctcgggat ccagatgagc tcgggtgact ccatcccgaa
      241 cccgccggcc gactggacga ccttgaacgt gtcgtacccg tacggcccga gccgggcctg
      301 gagcgccgtg aaggcgcgga cggcggcatc gaggagggca gcgccgttcg tgcccgggcg
      361 gtaccaggcg cggatcgtcg tctgccccac ctgccgcgcg accgaccggt agtccgtggc
      421 cgcggtcacc gtgaagtcgc ggaccccgtg cgcctcgaag acctgggtca ggccgtcggc
      481 gctggccgag acgcgatcgc cggtcgtggc caacacgagc cgccggtcag ccaccaccgt
      541 gacccgcacc gacgggctcg tcggcgtctc gaacgggtcg ccgtggttcg gtcgatcgaa
      601 cgcgatccgg cggctcaccc acggcagcca gcgatagagg tcggcgatcc cgttggcccg
      661 ggcgaacagc cagtccgatc cggccgtccc ggtacgcagc cgggcgctgt agcgaacccg
      721 gaccaccgtc gttgcccccg ccggcaggat gccgccgagt ggcacgacga tcgtctggtc
      781 gctgacgctg gccgcgaccc ccgtcccgtc gacggtcacc gggcgcagcc gcatcccgcc
      841 caggcgcgcc gcgatggtat tcagctcgac ccggtcgatc gggccgccgg aggtgttgcg
      901 gacggtggcc gtggaatcca cccagatcgc ccgcgtgccc cagctgagct tgagcgtcgc
      961 ccggtacgtg gcgtccaggt cgaggctgga ccgattcacc gagcccggaa cgatcgccgc
     1021 cgtcccgacc agcggtgcgc tgtcgatccg cagcggtgcg gcggtgaccg gcaccgggcg
     1081 ggcgggcgag gggagcccga cgaggacggc ggccaacatg gcggcggcga cgagcgggcg
     1141 ggcgcgagcc atcgggccat cctagcgccc ggcgacccag ccgcctcccg ccgctagact
     1201 ctcgctcgtg accgccccct cgctccccga cgccggtgcg gatctcctcg tcgaggcgat
     1261 ccggtcgcgc ctgcccgatc ttcgcctgct gaccgacgag atcgaccgcg agagctaccg
     1321 tcgagacgag acggcctacc tgccggccgg cctgccgtgc gcggtcgccc tgccgaccac
     1381 gacccagcag gtcgccgagc tcgtgcggat ctgcggcgag ctgcgggtcc cgatcgtccc
     1441 gcgcggtgcc gggtccggcc tgtcgggcgg cgccgcgggc atcgagggcg cgctcacgat
     1501 cgcgttcacg gccatgaacc ggatcctcga gatcgatcgg gagaacctcg tcgcggtcgt
     1561 ccagcccggg gtcgtcaatg ccacgctcaa ggcggcggtg agcgaggtcg ggctgttcta
     1621 cccgccggat ccggccagct acgagacctg ctcgatcggc gggaacctgg gcaccaacgc
     1681 cggcgggctg tgctgcgtga agtacgggca gacgcgggaa tcggtcctgt cgctcgaggt
     1741 cgtgatggcc gacgggacgg tcatccgaac cggcggccgc aatctcaagg acgtggccgg
     1801 ctactcgctg acgcatctcc tcgtcggcag ccaggggacg ctcggcctga tcaccgaggc
     1861 caccctccgc cttcgccccg ccccgccgcc ccgatcgacg atgctcgcct tcttcccgac
     1921 gctcgacggg gcgggcgagg ccgtggccgg catggccgcc gccgggcttg caccggtcac
     1981 gctcgagctg ctcgaccgct tcacgatcgc ggcggtcgac gacatgcacg acctcggcct
     2041 cgaccggtcg gccgccgcga tgctgatggt cgaatccgac ctgccgggca gcgccgccgg
     2101 cgacgagctg gcgcgcgccg agacggcctg ccgggtggcg ggcgcgaccg acgtgatccg
     2161 tgccgccgat gcgcaggagg ccgattggct gcgccaggcc cgccgggccg cccactatgc
     2221 gctcgaacgg ctcggcgagg tccgcatgga ggacgtgggg gtcccgcgct cgcgtgttcc
     2281 ggacctgctg cgcgcgatcg agcggatcgc cgcgacgcac gacgtccgga tcgggacgtt
     2341 cggccacatc ggtgacggca acctccaccc cgatctcgta ttcgatcgtg gcgacccgcg
     2401 tgccgaagcg gtgaccaagc tggtccaggc cgatctctac cgggcggcgc tcgagctcgg
     2461 cggcacggtc accggcgagc acgggatcgg ggcggcccgc cgcgactggc tcgaggtcca
     2521 gcgcggcgcc gacgcggtcc gcttcatgcg ggcgatcaag gccgcgctcg atccgctcgg
     2581 gatcctcaac ccggggcgcg tgatctaggc agacgcgtcg ccggcgactc cccgggcgct
     2641 cgttccgggt cgaagtcatc cgatttggcg gttcctgcgc atgtaccggc gagcccgacg
     2701 cgggagggtc gcgacaaccg cacagggcga cagccacatc cgggatgtcc ctccttcggg
     2761 gcgcccggga tcgtccatcg acaaggagga gccttcgtgc ccacagtcaa gatcagccgc
     2821 ctggcgtcgg tcgcggtcgc ggccgtgatc ctcgccatcg gcgtcgcgcc gctcgggatc
     2881 tgggcggccg accatctcga ttcgcccacg gtcagcgcca gcggcgcgac cgacctgacc
     2941 gacatctacg cgttctcgac gaacgacgcc aagaagacgg tcctcatcgc caacgtcaac
     3001 ccgggcgccg gggtcctgcc gaactcgacg acgtccttcg gcaccggcgt ccagtacaag
     3061 atcaccgtcg acacgaacgg ggacgcggtc ccgaacctga cctacctgct ccgcttcacg
     3121 gccggcaacc cgcagggcgt gacgatctgg cgcaacggca agctgtgggg ctcgggcagg
     3181 accggccacc cgatcgtcct ggccggcggt accaagctgt gggccggact ccgcgacgat
     3241 ccgttcttct tcgacctcga cgcgttcaag ggcaacatcc tcggcgccga caacggccgg
     3301 aagttgtgcg acgcgcagaa ggtcgacttc ttcaaggggc tcaacgtgag ctcgatcgtg
     3361 ctgatggtgc ccaacgccga gctcggcggg aacggcaaga cggtcggcgt gtcggccaac
     3421 acctccgtcc tcaagggcgg gcagtgggtc caggtcgacc agatgggccg gccgggcttc
     3481 aacacggtct tcaacaacca tctcgtggcc ggcgacgcgt cggtcaactc cgtcaaggag
     3541 ctgttcaacc ggacggttcc ggccgagcag tccagcctcg gcttcaaggc gaacgtgatc
     3601 gcgaccctca aggccgtgag caccgcgttc gagcacccct acacggacca gcaggcctcg
     3661 gatctcgccg acgtgctggt gccggacctg ctgacctaca aggtcggcga caagaccggg
     3721 ttcctcaacg gccgccggct cggtgacgac gtcatcgaca ccctgctcgc tgtcggggcc
     3781 aacacccc
//
LOCUS       DATDDI010000495         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_239869, whole genome shotgun sequence.
ACCESSION   DATDDI010000495 DATDDI010000000
VERSION     DATDDI010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239869"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1511)
                     /locus_tag="VIU37_07105"
     CDS             complement(<1..>1511)
                     /locus_tag="VIU37_07105"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013756.1"
                     /translation="VAGLRAQGQNQLADMLSSMHLTPGQGVDFGDLGQVLLLLAGVYL
                     LSSLFSWGQAYIMAGVTQRTVYRLRRETDEKLGRLPLKYFDGHPRGDVLSRVTNDIDN
                     IGQTLQQSLTQLITSLLTVVGVLILMLTISPILAAISLLAVPVSIAVTILIASRSQKQ
                     FVAQWASTGALNGHVEEMHTGHSIVKVFGRQEEAIARFNEENDRLYEASYRAQFISGI
                     IQPAMNFIANLNYVAIAVIGGLRVASGQMSLGDVIAFIQYSRQFTFPIVQTASIANVM
                     QSAVASAERVFELLDEPEEIADPVQPVALDRAVGAVAFEDIAFRYVPDVPLIDDLSLR
                     ADAGHTIAIVGPTGAGKTTLVNLLMRFYEIDGGRILVDGIDTREMTRDTLRRTFGMVL
                     QDTWLFHGTIRENIAYGRLDATDEELHAAAEAAHVDHFVRTLADGYETVIDDDATNVS
                     AGEKQLLTIARAFLADPPILILDEATSSVDTRTEVLIQRAMARLLHGRTAFVIA"
BASE COUNT          234 a          483 c          548 g          246 t
ORIGIN      
        1 gcgatgacga acgccgttcg gccgtggagc agccgcgcca tcgcccgctg gatcagcacc
       61 tcggtccgcg tgtcgacgga actcgtggcc tcgtcgagga tgaggatcgg cgggtcggcg
      121 aggaacgccc gggcgatcgt caggagctgc ttctcgccgg ccgacacgtt cgtcgcgtcg
      181 tcgtcgatca cggtctcgta gccgtccgcc agggtccgca cgaagtggtc gacgtgggcc
      241 gcctcggcgg ccgcgtggag ctcctcgtcg gtcgcgtcga gccggccgta ggcgatgttc
      301 tcgcggatcg ttccgtggaa cagccacgtg tcctggagga ccatcccgaa ggtccggcgg
      361 agcgtgtcgc gcgtcatctc gcgggtgtcg atgccgtcga cgaggatccg cccgccgtcg
      421 atctcgtaga accgcatgag caggttcacc agcgtcgtct tgccggcgcc ggtgggaccg
      481 acgatcgcga tcgtgtgacc ggcgtcggcc cggaggctca ggtcgtcgat gagcgggacg
      541 tccgggacgt agcggaacgc gatgtcctcg aaggcgaccg cgccgaccgc ccggtcgagc
      601 gcgacgggct gcacgggatc ggcgatctcc tcgggctcgt cgagcagctc gaagacgcgc
      661 tccgcggacg ccaccgccga ctgcatgacg ttggcgatgc tggcggtctg gacgatcgga
      721 aaggtgaact ggcgcgagta ctggatgaat gcgatgacgt cgccgagcga catctgcccg
      781 gacgcgacgc gcagcccgcc gatgaccgcg atcgccacgt agttgaggtt ggcgatgaag
      841 ttcatcgccg gctggatgat cccggagatg aactgggcgc ggtagctcgc ctcgtacagc
      901 cggtcgttct cctcgttgaa ccgggcgatc gcctcttcct ggcggccgaa caccttgacg
      961 atcgaatggc ccgtgtgcat ctcctcgacg tgcccgttga gggcgccggt ggaagcccac
     1021 tgggcgacga actgcttctg cgagcggctg gcgatcagga tcgtgaccgc gatcgagacc
     1081 gggaccgcca gcaacgagat ggcggccagg atcgggctga tcgtgagcat caggatcagg
     1141 acgccgacga cggtcagcag ggacgtgatc agctgggtca ggctctgctg gagcgtctgg
     1201 ccgatgttgt cgatgtcgtt ggtgacccgg ctcaggacgt cgccgcgcgg gtggccgtcg
     1261 aagtacttga gcggcaggcg gccgagcttc tcgtcggttt cacgccgcag ccggtagacc
     1321 gtgcgctggg tgacgccggc catgatgtac gcctgccccc agctgaacag cgagctcagg
     1381 agatacacgc cggccagcaa cagcaggacc tggccgaggt cgccgaagtc cacgccctgg
     1441 ccgggcgtca ggtgcatgct cgagagcatg tcggcgagct ggttctgccc ctgcgcccgg
     1501 agcccggcga c
//
LOCUS       DATDDI010000496         2247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_614333, whole genome shotgun sequence.
ACCESSION   DATDDI010000496 DATDDI010000000
VERSION     DATDDI010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614333"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2247)
                     /locus_tag="VIU37_07110"
     CDS             complement(<1..>2247)
                     /locus_tag="VIU37_07110"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY6013757.1"
                     /translation="LSHDLFEGVFARAGLVTDIELFDEFPSHYLEAAARQHRWARGDW
                     QLLPWIVGRARDATGQRRPRLPVIGLWKMIDNLRRTASAPLSVATLGVAWLVPTVPAL
                     TWTALVVASIVIPELIPVLTGLLPRRQGISRRSHLRAVGGDISLAAVHVGLGLTFLAD
                     QAWLMADAIVRALTRLTITHRRLLEWTTAAQAKANADRGTAGFYRRMAGGVGLAVALG
                     AAVLAFRPESTWLAAPFVALWLVAPVAASLVSRPPLRSGRTALSPGDTEALRLIGRGT
                     WRFFEAFVGPEDHSLPPDNFQDDPKPVVAHRTSPTNIGMYLLATVTARDLGWIGTCDM
                     VERLEATLASIEELQRFRGHLYNWYDTRTLEPLGDRYVSSVDSGNLAGHLLAVSSACL
                     DIVDRPLPIDAAVAGIRDALALVGEAARQDGDAGRSQTLTRRNLDEALADLVPQPDGT
                     ASPESWAGRLGELAERTRTLVDIATVLTSERGGVPDHEIVVWAEAARATVESHRRDVA
                     ETRGSTSTPAAGTDPAVPTEAGRDAGSAFSVTMERRLQAVATHARRLFGEMDFSFLFD
                     PTRKLLSIGYSVTTGTLDPSCYDLLASECRLGSFLAIAKGDVDADHWFRLGRALTPVG
                     RGSALISWSGSMFEYLMPALVMRAHPLSLMDQTYRLVVARQISYGTSKGVPWGVSESA
                     YNARDLDQTSQYSSFGIPGLGLKRGLSENLVIAPYATGLAAMVDPEAAIRNFERLGRA
                     GARGPYGFR"
BASE COUNT          340 a          783 c          826 g          298 t
ORIGIN      
        1 ccggaacccg tacgggcccc tcgcgccggc ccggcccaga cgctcgaagt tccggatggc
       61 ggcctccggg tccaccatgg cggcgaggcc cgtcgcgtag ggcgcgatca ccaggttctc
      121 gctgagtccc cgcttgaggc cgagaccagg gatcccgaag ctcgagtact gggaggtctg
      181 gtcgagatcg cgcgcgttgt acgcggactc ggaaacgccc cacgggacgc ccttggaagt
      241 gccgtagctg atctgccggg cgaccacgag ccggtaggtc tggtccatca ggctgagtgg
      301 atgcgcccgc atgaccagcg ccggcatgag gtactcgaac atcgagcccg accacgagat
      361 gagcgccgac ccgcgaccga ccggcgtcag cgcccggccg agccggaacc agtggtccgc
      421 gtcgacgtcg cccttggcga tcgccaggaa gctgcccagt cggcactccg aggccagcag
      481 gtcatagcag ctcggatcca gcgtgccggt ggtcacgctg tacccgatcg acaggagctt
      541 cctcgtcggg tcgaacagga aggagaagtc catctccccg aacaggcgcc tggcgtgggt
      601 cgcgacggcc tggagacgcc gttccatcgt cacggagaag gctgaacccg cgtcgcggcc
      661 tgcctccgtg ggcaccgccg ggtcggtccc ggcggccggc gtggacgtgg accctcgcgt
      721 ttccgccacg tccctgcgat gactctcgac ggtcgcccgc gcggcctccg cccagacgac
      781 gatctcgtgg tcgggaacgc cgccacgttc cgacgtgagg acggtggcga tgtcgacgag
      841 cgtgcgggtc cgttccgcca gttccccgag ccggccggcc cagctctccg gcgaggccgt
      901 gccatccggc tgcgggacca ggtcggcgag cgcctcgtcc aggttgcggc gggtcagcgt
      961 ctgggaccga cctgcgtcgc catcctgccg ggcggcctct ccgaccaggg ccagcgcatc
     1021 gcggatcccg gcgacggcgg cgtcgatcgg cagcgggcgg tcgacgatgt cgaggcaggc
     1081 gctcgacacg gcgagcagat gaccggccag gttgccgctg tcgaccgagg acacgtagcg
     1141 gtcgccgagc ggttccaggg tgcgcgtgtc gtaccagttg tagaggtggc cacggaatcg
     1201 ctgcagctcc tcgatcgagg ccagcgtcgc ctcgagccgc tcgaccatgt cgcacgtccc
     1261 gatccagcca aggtcgcggg cggtcaccgt cgcgagcagg tacatgccga tgttggtcgg
     1321 cgacgtgcga tgagcgacga ccggcttggg atcgtcctgg aagttgtccg gtgggaggct
     1381 gtggtcctcc ggtccgacga acgcctcgaa gaagcgccac gttccgcggc cgatcaggcg
     1441 cagtgcttcg gtatcgccgg gggacagcgc cgtcctgccc gaccggagcg gtgggcggct
     1501 gacgaggctg gccgcgaccg gcgccaccag ccagagcgcc acgaacgggg ccgccagcca
     1561 ggtcgactcg ggccggaacg ccagcacggc ggcgccgagc gcgacggcga gcccgacgcc
     1621 gccggccatc cggcgataga agcccgcggt cccgcggtcg gcgttggcct tcgcctgtgc
     1681 ggcggtcgtc cactcgagca accgacggtg ggtgatcgtt agccgggtga gggcccgaac
     1741 gatggcatcg gccatcaacc acgcctgatc ggcgaggaac gtcaggccga gcccgacgtg
     1801 gacggcggcc aggctgatgt cgccgccgac ggcccgcagg tggctccgcc tggagatccc
     1861 ctgccgtcgc gggagcagcc cggtgaggac cgggatcagc tccgggatca cgatcgacgc
     1921 gaccaccagc gcggtccagg tgagcgccgg caccgtcggg accagccagg ccacgccgag
     1981 cgtggcgacc gacaggggcg ccgaagccgt gcggcgcagg ttgtcgatca tcttccagag
     2041 cccgatcacc gggaggcggg ggcgtcgctg gccggtcgcg tcgcgggccc ggcccacgat
     2101 ccacgggagg agctgccaat cgccgcgcgc ccaacggtgc tggcgggccg cggcctccag
     2161 gtagtgggag gggaactcat cgaacagctc gatgtccgtg accaggccgg ccctggcgaa
     2221 gacgccctcg aacaggtcgt ggctgag
//
LOCUS       DATDDI010000497         2459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_73649, whole genome shotgun sequence.
ACCESSION   DATDDI010000497 DATDDI010000000
VERSION     DATDDI010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73649"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..220
                     /locus_tag="VIU37_07115"
     CDS             92..220
                     /locus_tag="VIU37_07115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013758.1"
                     /translation="MSIVVPSKGANPAAIAPAVRAVANGLTRRVGILWDSAGSRDR"
     gene            346..1074
                     /gene="pcaH"
                     /locus_tag="VIU37_07120"
     CDS             346..1074
                     /gene="pcaH"
                     /locus_tag="VIU37_07120"
                     /EC_number="1.13.11.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018578 - protocatechuate 3,4-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0046278 - 3,4-dihydroxybenzoate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protocatechuate 3,4-dioxygenase subunit beta"
                     /protein_id="HEY6013759.1"
                     /translation="MASRIDRPTGLERPAPQIDPPLLYPDYVTSRLRAPSRTFGILPR
                     GMSELTGPVFGASRVQPSDADLTRQHDGEPQGERIIVAGRVTDADGRPVRGTLIEAWQ
                     ANAAGRYAHAEDDHPAPLDPNFTGLGRCLTGDDGAFRFVTIKPGAYPWRNHANAWRPS
                     HIHFSLFGQAFEQRLVTQMYFPGDPLLPFDPIFNSVPDARVRERLIARFDLAGAVPEW
                     ALAYRFDINLRGRAATPFEPEPDD"
     gene            1082..2257
                     /locus_tag="VIU37_07125"
     CDS             1082..2257
                     /locus_tag="VIU37_07125"
                     /inference="COORDINATES: protein motif:HMM:NF006091.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate 3-monooxygenase"
                     /protein_id="HEY6013760.1"
                     /translation="MRSSTQVGIVGAGPAGLFLSHLLHLAGIDSIVVEDRTRDYVEHR
                     VRAGVLEQGTVDLMRDTGLSDRMDREGLVHRGIEIRFDGRRFRVPMSDLAGGRAITIY
                     GQQEVVKDLIAARLAAGGDIRFEVDDVRIEGIDGSPSIRYSRDGQEHIIECDFVAGCD
                     GFHGVSRATIPAGVLTEYHHEFPFAWLGILAAVAPSTDELIYARHDLGFALHSLRSPS
                     ISRLYIQVDPTEDIDDWPDDRIWEQLRIRLATEGWELRDGPVIEKNIAPMRSFVVEPM
                     QFGRLYLAGDAAHIVPATGAKGLNLAVADVFVLARALTEWYARGDGHLLEQYSATCLR
                     RVWRAQEFSNYMSAMLHRYPGDDPFRDRLQLARLETLTVSEPAARALSVNYTGLPLP"
     gene            complement(2243..>2459)
                     /locus_tag="VIU37_07130"
     CDS             complement(2243..>2459)
                     /locus_tag="VIU37_07130"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEY6013761.1"
                     /translation="VTLAALTALRAEGEIGMHVRAAIRNGLTPQEIAEVLLHVSIYAG
                     LPAGNAAFSIAQETLDELDRSADSGER"
BASE COUNT          373 a          881 c          820 g          385 t
ORIGIN      
        1 cggctactcg accacccgag tcgagatgac cgtcggagcc gtctcggtcg gcgccgccat
       61 cttcggtccc taggaccagg tcgtcggtgc cgtgtccatc gtcgtgccat ccaagggcgc
      121 gaacccggcc gcgatcgcgc ccgccgtccg ggcggtcgcc aacggcctca cccggcgggt
      181 cggcatcctc tgggacagcg ccgggtcacg ggaccggtag gcgccgagcg tccacccagt
      241 ggacactcgc cttgtcaccc cggaacgcta ccgctagcgt ctcgtgcacg ttgccgcgca
      301 ccgaggtgcc gctccgcagc ggacagcagg gagtccaccg cgaccgtggc cagccgcatc
      361 gaccgaccaa ccgggctcga gcgcccggcc ccgcagatcg acccgccgct gctctatccg
      421 gactacgtga cctcgcggct ccgggccccg agtcggacgt tcgggatcct gccgcgtggc
      481 atgtcggaac tgaccggacc cgtgttcggc gccagccggg tgcagccatc ggacgccgac
      541 ctgacgaggc agcacgatgg cgagccacag ggcgaacgga tcatcgtcgc gggccgggtc
      601 acggacgccg acggtcgccc cgtccgaggg acgttgatcg aggcgtggca ggccaatgcg
      661 gcgggtcgct atgcccatgc ggaggacgac cacccggcac ccctggatcc gaatttcacc
      721 ggtctcggcc ggtgcctgac cggagacgac ggcgcattcc gcttcgtcac gatcaagccg
      781 ggcgcgtacc cgtggcgcaa tcacgccaac gcctggcggc catcgcacat ccatttctcg
      841 ctcttcgggc aggcattcga gcagcgactg gtcacccaga tgtacttccc gggcgatccg
      901 ctgctcccgt tcgatccgat cttcaactcc gtcccggacg cgagggtccg cgaacggctg
      961 atcgcgcggt tcgacctggc cggtgccgtc cccgaatggg cgctcgccta tcgcttcgac
     1021 atcaacctgc gcggacgagc ggccacgccg ttcgaacccg agcccgacga ctaggcgccg
     1081 gatgcggtcc agcacccagg tcgggatcgt cggcgccggt cccgcgggcc tgttcctctc
     1141 acatctcctg cacctggccg ggatcgattc gatcgtcgtg gaggatcgca cccgcgacta
     1201 cgtcgagcat cgggtgcgag ccggcgtcct cgagcagggc acggtcgacc tgatgcggga
     1261 caccggactg tcggaccgga tggaccgcga gggcctcgtc catcgaggaa tcgagatccg
     1321 gttcgacggc cgccgtttcc gcgtgccgat gtccgatctg gccggtgggc gggcgatcac
     1381 gatctacggc cagcaggagg tggtcaagga cctcatcgcc gcgcgcctgg cggccggcgg
     1441 cgacatccgg ttcgaggtcg acgatgtccg gatcgagggg atcgacggca gtccttcgat
     1501 ccgctacagc cgcgacgggc aggagcacat catcgagtgc gacttcgtgg ccggttgcga
     1561 cgggttccac ggtgtgtcac gcgcgaccat cccggcaggt gtcctcaccg agtaccacca
     1621 tgagttcccg ttcgcgtggc tcggcatcct ggccgcggtt gcgccctcca ccgacgagct
     1681 gatctatgcc cggcacgacc tcggcttcgc cctccacagc ctccgctcgc cgtcgatcag
     1741 ccgtctctac atccaggtcg atccgaccga ggacatcgac gactggccgg acgaccggat
     1801 ctgggaacag ctgcggatcc gactcgcgac cgaaggatgg gagctccgtg acgggccggt
     1861 gatcgagaag aacatcgcgc ccatgcgcag tttcgtcgtg gagccgatgc agttcggccg
     1921 gctctacctg gccggcgatg cggcccacat cgtcccggcc acgggcgcga agggcctgaa
     1981 cctagcggtg gcggacgtct tcgtcctggc ccgggcactc accgagtggt acgcgcgcgg
     2041 ggatgggcac ctgctcgagc agtactcggc gacctgtctt cgccgcgtct ggcgcgccca
     2101 ggaattctcg aactacatga gcgcgatgct gcaccgctat ccgggcgacg atccgttccg
     2161 ggatcgcctg cagctggcga ggctggagac cctcaccgtc tcggagccgg ctgcccgggc
     2221 cctgtccgtg aactacaccg gcctaccgct cccctgaatc ggccgaccga tccagctcgt
     2281 caagcgtctc ctgggcgatc gagaatgcgg cgttcccggc gggaaggccg gcgtagatgg
     2341 acacgtggag caggacctcg gcgatctcct ggggggtcag tccattgcgg atcgccgccc
     2401 gcacgtgcat gccgatctcg ccttccgcgc ggagtgccgt caacgcggcc agggtgacc
//
LOCUS       DATDDI010000498         3280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_94130, whole genome shotgun sequence.
ACCESSION   DATDDI010000498 DATDDI010000000
VERSION     DATDDI010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94130"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..418
                     /locus_tag="VIU37_07135"
     CDS             44..418
                     /locus_tag="VIU37_07135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013762.1"
                     /translation="MLDHEEKFLFKEEILHLANAVAEPGTLDNVEDLLTDVITSPRFD
                     SEVFTLERSLQVMLGPRAGTTLVGLLTVAPEVFDEVAEVRIPSELHERLVAWRARFGL
                     AIDNALNFLNNPDGIQGHNFAT"
     gene            443..649
                     /locus_tag="VIU37_07140"
     CDS             443..649
                     /locus_tag="VIU37_07140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013763.1"
                     /translation="MLQGRLTLVRYNNEPQFFMADASVFLGLVADIMERLGPYLEPDA
                     VEAETLGRLRDAIQLIERKTASRP"
     gene            658..1761
                     /locus_tag="VIU37_07145"
     CDS             658..1761
                     /locus_tag="VIU37_07145"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6013764.1"
                     /translation="MRHIYLAATGQNRGKTTLSLGVLDGFLRRGLSTGFMKPVGQRTV
                     IEDGVPADEDALLMRHVFGLPEPFTQMSPVHIPRGFTQTYIEGGFVEDLPALIRSAHA
                     AFVRDREVLLIEGTGHAGVGAVIGLSNAAVAAMLGAPAVIVSEGGVGRPIDEIVLNAS
                     LFERHGVQVAGAIVNKVDLDAKPHLARTLERGLARHGIPLLGVLPYRPILSNPTLAMV
                     LEGVHGETLNAGPDLDLVIGGVAIGAMEPEHMLQRIGPRALVIVPGDRADLILAIVRA
                     HVASDGMGDGALGLVLTGGYRPDASVVDAIRTANLFATLVPEDTYVVASEVHDLLVKT
                     HPADLGKIAEIKALVWEYLFIDRILGAASSAPG"
     gene            complement(1800..2987)
                     /locus_tag="VIU37_07150"
     CDS             complement(1800..2987)
                     /locus_tag="VIU37_07150"
                     /inference="COORDINATES: protein motif:HMM:NF013473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013765.1"
                     /translation="MAAGRRILVAYLVYFGAIGAAYPYLPVFYRDLGLTFAEIGLLTA
                     VQAAVQLALGPIWGGLMDRFPSIGLTLPLAAAVAATGGFILFLAVDFEGALAGSLLLF
                     AGLSGIGPTLDARTLETLGSAGRHRYGQVRAFGSLAFVIVALLVGLLLEARGSRSLFW
                     VYLPCLLATIVVTATIRRRGITRSVSLLRGAGQVLRAPGILLFLAGFTIVWTALTAVS
                     AFYSIQLVALGGSTGLVGITWSFGAVIEVPLMYVFPRLGARFGTERLVVAGATVFLLR
                     ALLASIATDPMVLVLIAPLEGLGFALTFVGGVTVLAARLPLSLGGTAQGLFAASTGLA
                     TIFGSVVGGTVAGAVGIHWMFAVSAGIALVGVAVLGVAVLRPRTGPGSPPTPTPTLPA
                     AAA"
     gene            complement(2995..>3280)
                     /locus_tag="VIU37_07155"
     CDS             complement(2995..>3280)
                     /locus_tag="VIU37_07155"
                     /inference="COORDINATES: protein motif:HMM:NF014611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEY6013766.1"
                     /translation="PAERVAAPVLHRALLAARSRWETGERSGDVLRDAMWETVTAEPL
                     AHVEYVSVADGATLRELDRVEGPALLSLAVRFGTTRLIDNEPLGAEPAAG"
BASE COUNT          529 a         1205 c         1152 g          394 t
ORIGIN      
        1 atggcgtccg gagcgcatcg agctccggtg taccatcgcg gccatgctcg accacgaaga
       61 gaagttcctg ttcaaggagg agatcctcca cctggccaac gccgtcgccg agccaggcac
      121 gctcgacaac gtcgaggacc tcctgacgga cgtgatcacg agcccccgct tcgactccga
      181 ggtgttcacc ctcgagcgga gcctccaggt gatgctcggg ccacgggcgg ggacgaccct
      241 cgttggcctc ctgactgttg ccccggaggt cttcgacgag gtcgccgagg tgcgcatccc
      301 gtccgagctg cacgagcggc tcgtcgcctg gcgggccagg ttcgggctgg cgatcgacaa
      361 cgcgctcaac ttcctcaaca acccggacgg catccagggc cacaacttcg ccacctagat
      421 cgcgcacgtc gaggaacgcc gcgtgctgca gggccggctg accctggtcc gctacaacaa
      481 cgagccgcag ttcttcatgg ccgacgcgag cgtcttcctc ggactcgtgg ccgacatcat
      541 ggagcgcctc ggcccgtatc tggagccgga cgccgtcgag gccgagacgc tcggccggct
      601 gcgcgacgcg atccagctca tcgaacgcaa gaccgccagc cgtccctgac cggcgccatg
      661 cgccacatct atctcgcggc gaccggccag aaccgcggca agaccacgct cagcctcggg
      721 gtcctcgacg ggttcctgcg gcgcggcctg tcgaccgggt tcatgaagcc ggtcgggcag
      781 cgcacggtca tcgaggacgg cgtacccgcc gacgaagacg cgctgctgat gcgccacgtc
      841 ttcgggctgc ccgagccgtt cacccagatg agcccggtcc acatcccgcg cggcttcacc
      901 cagacctaca tcgaaggcgg cttcgtggag gacctgccgg cgctcatccg gtccgcccac
      961 gccgcgttcg tccgggaccg ggaagtcctg ctcatcgaag ggacgggaca tgccggcgtc
     1021 ggagcggtga tcggcctgtc gaacgcggcc gtcgcggcga tgctcggcgc cccggcggtc
     1081 atcgtctccg agggtggcgt cggccggccg atcgacgaga tcgtgctcaa cgcctcgttg
     1141 ttcgagcgcc acggcgtgca ggtcgccgga gcgatcgtca acaaggtcga cctcgacgcc
     1201 aagccccacc tcgcgaggac gctggagcgt ggcctcgccc gccacggcat cccgctcctg
     1261 ggcgtcctgc cctaccgccc gatcctgtcc aacccgaccc tggcgatggt cctcgagggg
     1321 gtccacggcg agacgctcaa cgccggcccg gacctcgacc tcgtgatcgg cggggtggcg
     1381 atcggcgcga tggagcccga gcacatgctc caacggatcg ggccgcgcgc gctcgtgatc
     1441 gtgccgggcg accgggccga cctgatcctg gccatcgtcc gcgcccacgt cgcgtcggat
     1501 ggcatgggcg acggcgcgct cgggctcgtg ctgacgggcg gctaccggcc ggacgcgtcc
     1561 gtggtcgacg cgatccggac ggccaacctg ttcgccacgc tcgtccccga ggacacgtac
     1621 gtcgtggcct cggaggtcca cgacctgctg gtcaagaccc accccgccga tctcggcaag
     1681 atcgccgaga tcaaggcact cgtgtgggag tacctgttca tcgaccggat cctgggcgcc
     1741 gcgagcagcg cgcccggctg agccgagggt cgtgcctcag cgccgatcgg cccggccgat
     1801 cacgctgccg ccgcagggag cgtcggcgtg ggtgtcggcg gagatcccgg tcccgtccgc
     1861 ggccgcagca ccgcgacgcc cagcaccgcg acgcccacca gggcgatccc cgcgctgacc
     1921 gcgaacatcc agtggatgcc gacggccccg gccaccgtgc cgccgacgac cgagccgaag
     1981 atcgtggcca gccccgtgct cgccgcgaac aggccctggg cggtcccgcc gagggacaac
     2041 ggcaggcgag cggccaggac ggtcacgccc ccgacgaagg tcagggcgaa cccgaggccc
     2101 tccagcgggg cgatcaggac cagcaccatc gggtcggtgg cgattgaggc gagcagggcc
     2161 cggagcagga agacggtggc cccggcgacg accagccgct ccgtcccgaa ccgggcgccg
     2221 aggcgcggga agacatacat cagcgggacc tcgatgaccg cgccgaacga ccaggtgatc
     2281 ccgaccaggc cggtcgaacc gccgagcgcc acgagctgga tcgagtagaa ggcgctcacc
     2341 gcggtgagcg cggtccacac gatcgtgaac ccggccagga acagcaggat gcccggggcc
     2401 cggaggacct gccccgcccc acggaggagg ctgaccgagc gcgtgatgcc gcggcgccgg
     2461 atcgtggccg tgacgacgat cgtcgcgagc aggcacggca ggtagaccca gaacaggctg
     2521 cgcgacccgc gagcctcgag cagcaggccg accagcaggg cgacgatcac gaacgccagc
     2581 gagccgaacg cacggacttg gccgtaccgg tggcggccgg cggatccgag cgtctcgagc
     2641 gtccgggcgt ccagggtcgg gccgatcccg gacagcccgg cgaacaggag gagcgacccg
     2701 gccagggcgc cctcgaagtc cacggccagg aacaggatga acccgccggt cgcggcgacc
     2761 gcggccgcca gcgggagggt cagcccgatg ctcgggaagc ggtccatcag cccgccccag
     2821 atcggcccga gcgccagctg gaccgccgcc tggacggcgg tcagcagccc gatctccgcg
     2881 aaggtcagcc cgaggtcgcg gtagaagacc ggcaggtacg gataggccgc gccgatcgcg
     2941 ccgaagtaga ccaggtaggc gacgaggatc ctgcggccgg cagccatcgc cggctcaccc
     3001 ggccgcgggc tcggcgccca gcggttcgtt gtcgatgagg cgggtcgtcc cgaagcggac
     3061 ggcgagtgac aggagcgccg gaccctcgac ccgatcgagc tcccggagcg tcgcgccgtc
     3121 ggcgaccgac acgtactcga cgtgggccag cggttcggcc gtgaccgtct cccacatcgc
     3181 gtcgcggagc acgtcgccgg accgctcgcc ggtctcccag cgcgagcgcg ccgccaggag
     3241 ggcccggtgg aggacgggag ccgccacccg ctcggccggc
//
LOCUS       DATDDI010000499         1582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_218872, whole genome shotgun sequence.
ACCESSION   DATDDI010000499 DATDDI010000000
VERSION     DATDDI010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218872"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1184
                     /locus_tag="VIU37_07160"
     CDS             <1..1184
                     /locus_tag="VIU37_07160"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY6013767.1"
                     /translation="GSEPFHTVYLSGLIRDPDGQKMSKTKGNVVDPLGVIDESGADAL
                     RFAVIHGATPGNDQRFGTTKLEHARNFANKLWNATRFVIGARPLTIPEDAERRLPDDR
                     YLGPAERWLRSRAAATVAAVDAAMADYAFGEVTRLLYDAIWSEYCDWGLELAKVHLAD
                     EDLAPEAREAIWWTLVEELDTYLRLLHPVMPFVTEALWQNLPHRASDPELLIVARWPA
                     AGDRDARAESEVVALIELVGAIRNARAEARVQPAAWLPVDVVVPVRMGPTFEALRPAI
                     ARLARARPLERELTVEALTAAGRPGDLAVISGELEAHVRVGDPASAGPGTGGESAELD
                     RSRLERELAEAEGWLAAARDRLANESFVGRAPASVVQGARAREAELADQVERLRERLG
                     R"
     gene            1335..>1582
                     /locus_tag="VIU37_07165"
     CDS             1335..>1582
                     /locus_tag="VIU37_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013768.1"
                     /translation="MPTAAHLHASRLDDRAIELLAQGRDRPSVALPPLGDLLGMLAWS
                     LVPAVTLLALVDWQAAAVVGGAGLLVRAIRRRSGRPEAT"
BASE COUNT          198 a          590 c          586 g          208 t
ORIGIN      
        1 ccggcagcga gcccttccac accgtttacc tctcgggcct gatccgggac ccggacggcc
       61 agaagatgtc gaagaccaag ggcaacgtcg tcgatccgct gggcgtgatc gacgagtcgg
      121 gcgccgacgc gctgcgcttc gcggtcatcc acggcgcgac tcccggaaac gaccagcgct
      181 tcgggaccac caagctcgag cacgctcgca acttcgccaa caagctctgg aacgccacgc
      241 gcttcgtcat cggcgcgcgc ccgctgacga tccccgagga cgcggagcgg cgcctgcccg
      301 acgatcggta cctcgggccg gccgaacgct ggcttcgatc acgcgccgcg gcgaccgtcg
      361 ccgccgtcga cgcggccatg gccgattacg ccttcggcga ggtcacccgt ctcctctacg
      421 acgcgatctg gagcgagtac tgcgactggg gcctcgagct ggccaaggtc cacctggccg
      481 acgaggacct cgcgcccgag gcgcgcgagg cgatctggtg gacgctggtc gaggagctcg
      541 acacctacct ccgcctgctc cacccggtga tgccgttcgt gaccgaggcg ctctggcaga
      601 acctgccgca tcgagcgtcc gaccccgagc tgctgatcgt ggcccgctgg ccggcggccg
      661 gcgatcgcga cgcccgggcg gagtccgagg tggtcgccct gatcgagctg gtcggggcga
      721 tccgcaatgc ccgcgccgag gctcgagtcc agccggccgc ctggctgccg gtcgacgtgg
      781 tcgtgccggt caggatgggc cccacgttcg aggcgctgcg cccggccatc gcgcggctcg
      841 cgcgggcgcg cccgctggag cgcgagctca ccgtcgaggc cctgacggcc gcgggccggc
      901 cgggcgacct ggcggtgatc tccggcgagc tcgaggcgca cgtccgcgtg ggcgacccgg
      961 cgtcggcagg tcccgggacg ggcggcgagt cggccgagct cgaccgatcc cggctcgagc
     1021 gcgagctggc ggaggccgag ggctggctgg cggcggcgcg ggatcgcctg gccaacgagt
     1081 cgttcgtcgg tcgcgccccg gcatcggtcg tgcagggagc ccgggcccgc gaagccgagc
     1141 tcgccgacca ggtcgagcgg ctccgggaac gcctcggtcg ctgagccggc ggatcgtcca
     1201 ccgcggggcg tggacgcccg gtcctatact cggatccccc ggtcggatct ggtccggcgg
     1261 ggaccggcag accgatggaa ccgatggatt ccggcgcacc agggcaccca ggcaccgtcg
     1321 ctcgcgagcg cctcgtgccc acggccgcgc acctccacgc gtcgcgcctc gacgaccgtg
     1381 cgatcgagct gctggcccag ggccgcgacc ggccgagcgt ggcgctgccg ccgctcggcg
     1441 acctcctggg catgctcgcc tggtcgctgg tgccggcggt taccctcctt gcgctcgtcg
     1501 actggcaggc ggcggcggtc gtcggcggcg cgggtctgct cgtgcgggcg atccggcggc
     1561 gcagcggccg tccggaagcc ac
//
LOCUS       DATDDI010000500         1639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_468572, whole genome shotgun sequence.
ACCESSION   DATDDI010000500 DATDDI010000000
VERSION     DATDDI010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468572"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..830)
                     /locus_tag="VIU37_07170"
     CDS             complement(<1..830)
                     /locus_tag="VIU37_07170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013769.1"
                     /translation="MLYVAAGLAAMFGVLAVIGLGAIDQATQLVFQERLATAYTTAGI
                     LERDLGRAGHDAVEGSSGTGGSAGPGTAAALLRHFDEVSPYLFFRVTGVWLIDASGRI
                     ADVAGSPETPGPGDVTELVRDVSAGSVGAYVVGRALGPVPGAVPFAAIAVRLPDAGTG
                     ERFAVIHTVSINGTSDYDPQTYGSVPGSASPNPAATIAHGATGYHLEVVDPTGIAVLG
                     IGSDERPGEPSHHFPAIRPLVASGGAAAMIHQPDAVGSLEPHVMAVVPLAGSPFYVVL
                     "
     gene            complement(920..996)
                     /locus_tag="VIU37_07175"
     tRNA            complement(920..996)
                     /locus_tag="VIU37_07175"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(960..962),aa:Pro,seq:tgg)
     gene            complement(1012..>1639)
                     /locus_tag="VIU37_07180"
     CDS             complement(1012..>1639)
                     /locus_tag="VIU37_07180"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009146 - purine nucleoside triphosphate
                     catabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HEY6013770.1"
                     /translation="ATRSAHKLRELREVLDRSDIELVSLGDVAVQGDPVEDGATFEAN
                     ARIKARFAAGATGLPALADDSGIEVDALGGLPGVRTRRYAGPNATDPENNAKLLRELA
                     GLPPARRGARYVCVLTLALPDANAPGGLRILSRRGTCRGRIASEPRGSGGFGYDPIFE
                     PAPEPPGGRTFGLYAAAEKHAISHRARAARRIAPVIRAALGSPASNLR"
BASE COUNT          237 a          585 c          612 g          205 t
ORIGIN      
        1 tcgaggacga cgtagaaggg gctgccggcg agaggcacga cggccatgac gtgcggctcg
       61 agactgccga ccgcatcggg ctggtgaatc atcgccgcag caccaccgct ggccacgagc
      121 ggccggatcg ccgggaagtg gtggctcggc tcaccgggtc gctcgtcgga accgatgccg
      181 aggaccgcga ttccggtcgg atcgacgacc tcgaggtggt agcccgtggc gccgtgggcg
      241 atggtggcgg ccgggttcgg cgatgccgac ccgggcaccg atccgtatgt ctgtgggtcg
      301 tagtcactgg tcccgttgat cgacaccgtg tggatgaccg cgaaccgctc gcccgtacct
      361 gcatccggca ggcgcaccgc gatcgccgcg aacggcacgg ccccgggcac gggccccagg
      421 gcgcggccga cgacgtacgc acccaccgag ccggcgctca catcccgcac aagctcggtg
      481 acgtcgccag gaccgggcgt ctccgggctg ccggcgacat cggcgatccg gcccgacgcg
      541 tcgatgagcc agacgcccgt gacccggaag aacaggtagg gcgacacctc gtcgaaatgg
      601 cgcagcagcg cggcggccgt gccggggccg gccgacccgc cggtccccga gctgccctcg
      661 accgcatcgt ggcccgcgcg gccaaggtcc cgctcgagga tcccggccgt cgtgtaggcg
      721 gtcgcgagcc gctcctggaa cacgagctgg gtggcctggt cgatggctcc caggccgatg
      781 accgcgagca cgccgaacat cgcggcaagg ccggcggcga catagagcat gatccgccac
      841 tgcaggccca ggtggcgcag ccctcgcgac gatcgagctc tcagacgtca gccccttcgg
      901 ctcagcacgg ggcggaagat ggtcggggcg gtgggattcg aacccacgac ttcgtgctcc
      961 caaagcacgc gcgctaccag gctgcgccac gccccgccgg tgcgacgctg actatcgcag
     1021 gttcgaggcc ggcgacccaa gcgcggcgcg gatgaccggc gcgatgcgcc gggccgctcg
     1081 ggcgcggtgc gagatggcgt gcttctcggc ggcggcatag aggccgaacg tccggccgcc
     1141 cggcggctcg ggagccggct cgaagatcgg gtcgtagccg aagccgccac tcccgcgcgg
     1201 ctcgctcgcg atccggccgc gacaggtccc gcggcggctc aggatccgca ggccacctgg
     1261 cgcgttcgcg tcgggcagcg cgagcgtcag gacgcagacg tagcgcgcgc cgcgccgcgc
     1321 gggcggcaga ccggccagct cgcgcagcag cttcgcgttg ttctccggat cggtcgcgtt
     1381 cgggccggcg tagcggcggg tccggacgcc gggcaggccg ccgagcgcat cgacctcgat
     1441 gccggagtcg tcggcgaggg ccggcaggcc ggttgcgccg gccgcgaagc gggccttgat
     1501 ccgggcgttc gcctcgaacg tcgccccgtc ttcgactgga tcaccctgga ccgccacgtc
     1561 gccgagcgat acgagctcga tgtcggaacg atcgaggacc tcgcggagct ctcggagctt
     1621 gtgggccgag cgcgtcgcg
//
LOCUS       DATDDI010000501         2838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_94176, whole genome shotgun sequence.
ACCESSION   DATDDI010000501 DATDDI010000000
VERSION     DATDDI010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94176"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /locus_tag="VIU37_07185"
     CDS             complement(<1..666)
                     /locus_tag="VIU37_07185"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY6013771.1"
                     /translation="MDRARRAALTALIVVAMIAAAGGSDAPGGVASLAATVGWPPSTL
                     VVSEVQTGGASASDEFIEIANQGRAPTDLLGLEVVYATSSGGTVTRKAAWDSSRILAP
                     GQRLLLANASGSYAGPADATYSGGTAATGGAVALRVVGGSVLDAVGWGDATNGFVEGA
                     AALAPPAGSSIERAPGGAAGNATDSNDNATDWFVQPAPSPQNLAAPLVPVLSPTPTPD
                     VSPT"
     gene            833..1546
                     /locus_tag="VIU37_07190"
     CDS             833..1546
                     /locus_tag="VIU37_07190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013772.1"
                     /translation="MARAKRTARAEARRRYRAVTEPLPPDTEEEPEAAPRRAATPARS
                     NADTARPGIGAALRSAYHRPDIRADLAWLPNLARSKAFWIPLAAAGAAAIAYVVAPSA
                     LTYTLMQYLVWAPPIGLLFIAGFLAPRASWLYGIVLGLISSVIFAAMLYSGAWNASAA
                     VIGGPTITADAYAGFVAQWIVLSLLAGPFFAAAAAWYRRFLQLSNPNRGRRPQQPQKR
                     VGDGRSRASTNPQKAGARR"
     gene            complement(1608..>2838)
                     /locus_tag="VIU37_07195"
     CDS             complement(1608..>2838)
                     /locus_tag="VIU37_07195"
                     /inference="COORDINATES: protein motif:HMM:NF025930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEY6013773.1"
                     /translation="FASFGFAKSHAAAFARTAYESAFLKLFYPAQFLAGLINAQPMGF
                     YPVEVLVNDAKRHGVAVLPVDINASSYRTTTEWAGRPGWALAGSDGDDGAHDDDPGEP
                     LPEGSGIAARPRPVRSPACVIPGAAARDRWIPDAASGWGVRLGLRLVKGIGEQHEALL
                     DRELARGPYRSLADVVERTGLPEEVLERLIRTGALDSLGRPRRELLWQLREVAGASRG
                     RVDGRALRGAARAGGRRSAAAGRPMDLRLPATDAPALPELTESERIGDAYAVIGLDAR
                     RQVVTLFRPALDRLGAVTNASLAGRRSGPVRLGGLVVTRQHPMTAKGTVFLALEDETG
                     MVNVTLWPDTWARLRGVVRRHALLLVDGRLQREGDVVNVVADTVRALPEVAAPAGGPD
                     QPAGVRQLGHAGMRRLG"
BASE COUNT          378 a         1084 c         1021 g          355 t
ORIGIN      
        1 ggtcggcgag acgtcggggg tcggggtcgg cgagaggacc ggcacgagtg gtgcggccag
       61 gttctggggc gagggagccg gctggacgaa ccagtcggtg gcgttgtcgt tcgagtcggt
      121 ggcattgccg gccgcgccgc ccggagcgcg ttcgatgctc gagcccgcgg gtggagcgag
      181 cgcagcggca ccctccacga acccattggt cgcgtccccc caaccgacgg cgtcgagcac
      241 cgacccaccg acgacccgca gcgccaccgc cccgcccgtc gccgccgtgc cgccgctgta
      301 cgtggcgtcg gccggcccgg catagctgcc cgaggcgttc gccaggagca ggcgctggcc
      361 cggcgcgagg atccgggagc tgtcccaggc cgccttccgc gtcaccgtgc cgcccgagga
      421 cgtcgcgtag acgacctcga ggccgagcag gtcggtgggt gcgcggccct ggttggcgat
      481 ctcgatgaac tcgtcggatg ccgacgcgcc gccggtctgc acctccgaca cgacgagggt
      541 ggatggcggc cagccgacgg tcgcggccag cgaggccacg ccacccggtg cgtccgaacc
      601 gccggccgcg gcgatcatgg cgacgacgat gagcgcggtc agagccgcgc gccgggcacg
      661 atccatcgat gacctcccgg cgggatcggg acgggacggg cgatggcccc ggttatagtc
      721 gcgagccctg caccggcgct tacctgcgac tcaccggcgg cgtatccgca gtcgacccgt
      781 ctggactacg atgcgctcca ccatcccgac cccgataccc actggagaga ccgtggcccg
      841 cgccaagagg accgcacgcg ccgaggcgcg gcgccgttac cgagccgtca ccgaaccgct
      901 gccgcccgac accgaggagg agcccgaggc cgcgccccgc cgcgccgcca caccggctcg
      961 ctcgaacgcc gacacggcca ggcccggcat cggggcggcg ctccggagtg cctaccaccg
     1021 acccgatatc cgggccgacc tggcctggct gccgaacctg gcgcgctcga aggccttctg
     1081 gatcccgctc gccgccgcag gggcggccgc gatcgcctac gtcgtcgccc cgtccgcgct
     1141 cacctacacg ctgatgcagt acctcgtgtg ggcgccgccg atcggcctcc tgttcatcgc
     1201 cggattcctc gcgccgcggg ccagctggct ctacggcatc gtgctcggac tgatttcgtc
     1261 cgtgatcttc gccgccatgc tctactcggg tgcctggaat gcgtccgccg ccgtgatcgg
     1321 cggaccgacg atcacggccg acgcgtacgc cgggttcgtg gcgcaatgga tcgtcctgtc
     1381 gctgctggcg ggtccgttct tcgcggcggc ggcggcctgg taccggcgtt tcctccagct
     1441 ctcgaatccg aaccggggtc gccggccgca gcagccgcag aagcgcgtcg gcgacggccg
     1501 gagccgcgcc agcaccaacc cgcagaaggc tggcgcccgg cgctgatcgg gcggaccccg
     1561 gcgggtgtcg tcgaaggcgc ccgaccgaac ggaccggggg atcgcctcta gccgaggcgg
     1621 cgcatcccgg cgtgcccgag ctggcggacg ccggcgggct gatccggtcc accggccgga
     1681 gcggccacct cggggagtgc ccgcacggta tcggccacga cgttgaccac gtcgccctcg
     1741 cgctggagcc ggccgtcgac cagcagcagg gcgtggcgac gcaccacgcc gcgcagcctg
     1801 gcccaggtgt ccggccagag cgtgacgttg accattccgg tctcgtcctc gagcgccagg
     1861 aagaccgttc ccttggcggt catcgggtgc tggcgggtca cgaccaggcc gccgagcctg
     1921 accgggcccg accgtcgccc ggcgagcgac gcgttggtca ccgcgcccag gcggtccagc
     1981 gccgggcgga agagcgtcac cacctgtcgc ctcgcgtcga gcccgatgac cgcgtacgcg
     2041 tcgccgatcc gctccgactc ggtcagctcg gggagtgccg gggcatccgt cgccggcagc
     2101 cgcaggtcca tcggacgccc ggccgccgcc gaccgccggc cgccggcccg tgccgcgccc
     2161 cgcaatgccc ggccgtccac ccggccccgc gacgccccgg ccacttcccg gagctgccag
     2221 agcagctcgc ggcggggtcg cccgagcgaa tcgagcgccc cggtccggat cagccgctcg
     2281 aggacctcct cgggcaggcc cgtccgctcc accacgtcgg cgagactccg gtacggccct
     2341 cgtgccaatt cgcggtcgag cagcgcctcg tgctgttcgc cgatcccctt gaccaggcga
     2401 agccccagcc ggacgcccca gccggacgcg gcgtccggga tccagcggtc gcgcgccgcc
     2461 gcacccggga tgacgcaggc gggcgagcgg accgggcgcg ggcgggcggc gatccccgac
     2521 ccttccggga gcggctcgcc cgggtcgtcg tcatgcgcgc cgtcgtcgcc atcggagccg
     2581 gccagcgccc acccgggccg gcccgcccat tcggtcgtgg tgcggtacga ggacgcgttg
     2641 atgtcgaccg gcagcaccgc cacgccatgg cgcttggcat cgttgacgag gacctcgacc
     2701 gggtagaagc ccatcggctg ggcgttgatg aggccggcca ggaactgggc cgggtagaac
     2761 agcttgagga aggccgattc gtaggccgtc ctggcgaacg cggcggcatg gctcttggcg
     2821 aacccgaacg aggcaaac
//
LOCUS       DATDDI010000502         2424 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_676763, whole genome shotgun sequence.
ACCESSION   DATDDI010000502 DATDDI010000000
VERSION     DATDDI010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_676763"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1322
                     /locus_tag="VIU37_07200"
     CDS             <1..1322
                     /locus_tag="VIU37_07200"
                     /inference="COORDINATES: protein motif:HMM:NF018012.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0015948 - methanogenesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="trimethylamine methyltransferase family protein"
                     /protein_id="HEY6013774.1"
                     /translation="GAGANVDRLSRNVRLDPAQVEALVATAPSAFGLHARNPERDIAF
                     GGTNLVFGAVGGPAFVSDLDRGRRAGNFADFADYVRLIGALDVIHQEGGGPLEPTDLP
                     VATRHLDMYRTFAVELDKTWQCLGFGATPVRDALDVVGLIRGVDRDTMLREPSLMTVI
                     NTNSPLRLDGPMGDGLIEMAIHGQPVVATPFTLAGAMSPVSLAGALAQQNAEALFLVA
                     LAQIVRPGAPMVYGAFTSNVDMRTGAPAFGTPEAVKGAFASGQLARRYGLPWRSSNTT
                     ASNVVDAQAAYESEMAVWGAVMGGVNLLYQGAGWLEGGLTASFEKLIIDAEILQMISE
                     VLQPIPVDEASLGFDAIADVGPGGHFFGTAHTLERYETAFYRPLVSDWRNFETWQADG
                     SRTATERANTMWKRLLAEAVPPPLDPPVLEALDALVARRKREIAAGA"
     gene            complement(1337..>2424)
                     /locus_tag="VIU37_07205"
     CDS             complement(1337..>2424)
                     /locus_tag="VIU37_07205"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEY6013775.1"
                     /translation="LLDTGPMRWIGTRSYGIYPWHWPIFTLTRPGIDVPLDPIAVLAI
                     RLGLTALAAEISFRFVEAPIRAGAIERAWRRLRRPGTASGPPVPRWSTAVRAGAVAVL
                     LSAVVVSVTMARPPTPPVGMVTGSIDGLVLPADASPTASRPAARSPAAATAASPHPVH
                     ATALPAASFGPPTTPAPARLAHVTPAPSVAAPPAPSSGAPSATATPAASPPILAFGES
                     VMLQSAKALAHDLGPVRVDAAVGRQIGEGITILEHREAAGALAQTVIVQLGNNGPFYD
                     GQFDEVMAALRDVPTVIWINVRVPRDWEAHNNRIIASGVARYPNARMVDWNAATAGRP
                     DLFWDDGYHPKPEGAKLYADLVAAALK"
BASE COUNT          332 a          876 c          888 g          328 t
ORIGIN      
        1 gcggggccgg tgcgaacgtg gatcgcctgt cgcggaacgt tcggctggat cccgcccagg
       61 tcgaggccct cgtcgccacg gcgccctccg cgttcggcct ccacgcccgc aacccggagc
      121 gcgatatcgc cttcggtggc acgaacctgg tgttcggggc cgtcggcggg ccggccttcg
      181 tcagcgacct cgaccgcggc cgccgggccg gcaacttcgc cgacttcgcc gactacgtcc
      241 gcctcatcgg cgcgctcgac gtcatccacc aggagggtgg cgggcccctc gagccgaccg
      301 acctgccggt ggcgacccgc cacctcgaca tgtaccggac gttcgcggtc gagctcgaca
      361 agacgtggca gtgcctcggg ttcggggcga ccccggttcg cgacgcgctc gacgtcgtcg
      421 gcctcatccg cggcgtcgat cgcgacacga tgctgcgcga gccgtcgctg atgaccgtca
      481 tcaacaccaa ctcgccgctc cgcctcgacg ggccgatggg cgacgggctg atcgagatgg
      541 cgatccacgg ccagccggtg gtcgccacgc cgttcacgct ggccggcgcg atgagcccgg
      601 tctcgctcgc gggcgccctc gcgcagcaga acgccgaggc gctgttcctg gtcgccctcg
      661 cccagatcgt gcgccccggc gcgccgatgg tctacggcgc gttcacctcg aacgtcgaca
      721 tgcggaccgg cgctccggcg ttcgggacgc ccgaagcggt caagggcgcg ttcgccagcg
      781 ggcagctggc acgacgctac ggcctcccct ggcgttcgtc gaacacgacc gcctcgaacg
      841 tcgtcgacgc ccaggcggcg tatgaatccg agatggcggt gtggggcgcg gtcatgggcg
      901 gggtcaacct gctctaccag ggggccggct ggctcgaagg cgggctgacc gcgtcgttcg
      961 agaagctgat catcgacgcc gagatcctgc agatgatctc ggaggtgctc cagccgatcc
     1021 ccgtcgacga ggcgagtctc ggcttcgacg cgattgcgga cgtcggcccg ggcggacact
     1081 tcttcggcac cgcccacacg ctcgagcgct acgagaccgc gttctaccgg ccgctcgtgt
     1141 cggactggcg caacttcgag acctggcagg ccgacggttc gcggacggcg accgaacgcg
     1201 ccaacacgat gtggaagcgg ctgctcgccg aggccgtccc tccgccgctg gatccgccgg
     1261 tcctcgaggc gctggacgcc ctggtcgccc gccggaaacg cgagatcgcc gccggcgcct
     1321 gaccgcccgc ggggcgctac ttcagggccg cggccacgag gtcggcgtag agcttcgctc
     1381 cctccggctt cgggtgatac ccgtcatccc agaacaggtc gggccgtccc gcggtcgccg
     1441 cgttccagtc gaccatccgg gcattcggat agcgggcgac gccgctcgcg atgatccggt
     1501 tgttgtgcgc ctcccagtcg cgcggcacgc ggacgttgat ccagatgacc gtgggcacgt
     1561 cgcgcagggc cgccatgacc tcgtcgaact ggccgtcgta gaacggcccg ttgttgccga
     1621 gctggacgat caccgtctgg gccagggcgc ccgccgcctc acgatgctcg aggatcgtga
     1681 tcccctcgcc gatctggcgg cccaccgcgg catccacgcg caccggtccg agatcgtggg
     1741 ccagggcctt ggcgctctgg agcatcaccg attcaccgaa cgcgaggatc ggcggactgg
     1801 cggccggcgt ggcggtggcc gatggcgcgc ccgacgacgg ggctggcggc gcggcgaccg
     1861 agggcgcagg ggtgacgtgc gcgagcctcg cgggtgccgg cgtggtcggt ggaccgaagg
     1921 acgcggcggg aagcgccgtc gcgtgcacgg gatggggcga cgccgccgtg gccgcggccg
     1981 gcgaccgggc cgctggccga gaggccgtcg gggacgcgtc ggccggcagg accagcccgt
     2041 cgatcgagcc ggtgaccatg ccgacgggtg gggtgggcgg cctggccatc gtcaccgaca
     2101 cgaccaccgc cgacagcagg actgcgaccg cccccgctcg cacggccgtc gaccagcgcg
     2161 gcacgggcgg gccggatgcc gtcccgggtc ggcgcagccg gcgccaggcc cgctcgatcg
     2221 cgccggcgcg gataggcgcc tcgacgaacc ggaacgagat ctcggcggcg agtgccgtga
     2281 gcccgagccg gatcgccagc acggcgatgg gatccagcgg cacgtcgatc ccggggcggg
     2341 tgagcgtgaa gatcggccag tgccacgggt agatgccgta cgaccgggtc ccgatccagc
     2401 gcatcggacc ggtatcgaga agcg
//
LOCUS       DATDDI010000503         1695 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_260972, whole genome shotgun sequence.
ACCESSION   DATDDI010000503 DATDDI010000000
VERSION     DATDDI010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260972"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(267..980)
                     /locus_tag="VIU37_07210"
     CDS             complement(267..980)
                     /locus_tag="VIU37_07210"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY6013776.1"
                     /translation="MGLGSGLEPLARDALQACRLFTGLDERALELVESALRVRRFRRG
                     EVIFHAGDPGDSLFIVSSGAVKITVTAEDGAEPAILTTIGPGGFFGELALLDGAPRSA
                     TAAAVDAVETLVLRRDGFDRLVDSEVALRRALLSALAAEIRRLTAQVEDLHFLDLPGR
                     LARHLLREIDGPDEVPPPGEARLPWPYTQGELAAMIGGSRQSVNRLLADFIDQGLLRF
                     DGDELVVPDPRRLAAAARR"
     gene            1085..>1695
                     /locus_tag="VIU37_07215"
     CDS             1085..>1695
                     /locus_tag="VIU37_07215"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY6013777.1"
                     /translation="MSLRTCPACGAESPIRFRLCGSCGAPFDEARAADEIRRFATVVN
                     SDLKGSTALGERLDPESLREVLTLYFDDMRAVFESHGGTIEKIIGDAIVAVFGLPVRH
                     DDDALRAVEAAAESQRALASLNDRLDERWGVRLVVRTGVATGDVIFGEASIGQHVLTG
                     DTMKISSAMEQNAPPLEVLIADSTYELVKDAVEVEAVEPVTPKG"
BASE COUNT          270 a          591 c          607 g          227 t
ORIGIN      
        1 tagggaatca cataggtagt agtatagagt ggggatcctg gcttggcttg atgcatgcgc
       61 accatttgcg cgaactccat gccagtgggc cgaggcgggg aagtcatatt agtaaaattg
      121 agataccagc cgggccttag attccgaggt agagtgggat tatatgtcgg gggcgagccg
      181 ctccgccgcc gccagccggg cggcgaccgc gaccagcacg tccagggccc gtgcggatcg
      241 cccgccggac gaaccgccag cctcgctcat cggcgggcgg cggccgccag ccggcgcggg
      301 tccgggacca ccagctcgtc gccgtcgaac cggagcaggc cctggtcgat gaagtccgcc
      361 aggagccggt tcaccgactg gcgcgacccg ccgatcatcg ccgcgagctc gccctgcgtg
      421 tacggccacg gcagccgcgc ctcccccggc ggtggcacct cgtcggggcc gtcgatctcg
      481 cggagcaggt gtcgcgcgag cctgccgggc aggtccagga aatggaggtc ctcgacctgg
      541 gccgtcaggc gccggatctc ggccgcgagg gcggacagca gggcgcgccg cagcgccacc
      601 tcgctgtcga ccaggcgatc gaacccgtcg cgccggagga cgagcgtctc gaccgcgtcg
      661 accgcggcgg cggtcgccga ccggggcgcc ccgtcgagca gcgccagctc gccgaagaac
      721 ccgcccggac cgatcgtggt caggatcgcg ggttcagcgc cgtcctccgc ggtgaccgtg
      781 atcttgaccg cgcccgacga cacgatgaac agtgaatcgc ctgggtcgcc cgcgtggaag
      841 atcacctcgc cgcgccggaa ccgccgcacg cgaagcgcgc tctcgacgag ctccagggcc
      901 cgctcgtcga gacccgtgaa cagacggcat gcctgcagcg cgtcgcgggc gagcggttcg
      961 agtccggagc cgagtcccat gcgggcatcc tacgcgacgg gcgcgaccgg gtgccggcgc
     1021 caacgcggaa gaatcgacgg gcggcgcgcg agaatcggcg cggacccggc tagactccgc
     1081 gccaatgagc ctccggacct gtcccgcctg tggcgccgag tcaccgatcc gtttccgcct
     1141 gtgcgggtcg tgcggcgcgc cgttcgacga ggcgcgggcg gccgacgaga tccgtcgctt
     1201 cgcgacggtc gtcaactcgg acctcaaggg atcgaccgcg ctcggtgagc gactggaccc
     1261 ggagtccttg cgcgaggtgc tgacgctcta cttcgacgac atgcgcgccg tcttcgaatc
     1321 gcacggtggg accatcgaga agatcatcgg cgacgccatc gtcgccgtct tcggcctccc
     1381 cgtccgccac gatgacgacg cgctccgagc cgtcgaggcg gcggccgaga gccagcgagc
     1441 cctggccagc ctcaacgacc ggctcgacga gcgatggggc gtgcggctgg tcgtgcggac
     1501 cggggtcgcg accggcgacg tgatcttcgg cgaggcgagc atcggccagc acgtcctgac
     1561 cggcgacacc atgaagatct cctcggcgat ggagcagaac gcgccgccgc tcgaggtcct
     1621 catcgccgac tcgacgtacg agctcgtcaa ggatgcggtc gaggtggagg ccgtcgagcc
     1681 ggtaaccccg aaggg
//
LOCUS       DATDDI010000504         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_344004, whole genome shotgun sequence.
ACCESSION   DATDDI010000504 DATDDI010000000
VERSION     DATDDI010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344004"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1559)
                     /locus_tag="VIU37_07220"
     CDS             complement(<1..>1559)
                     /locus_tag="VIU37_07220"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HEY6013778.1"
                     /translation="FSLYGGLNDSTVNQAPFLIVGFGFGASFVALFAQLGGGIYTKAA
                     DVGSDLVGKVEAGIPEDDPRNAGVIADLVGDNVGDCAGRGADLFESTAAENIGAMILG
                     VGVYAIAVANNWPNPQAWIFFPLVVRAFGLLSTIVAIFFIRGREDENPMNMLNRGYWV
                     TTILSAAALLLVTNVMMQTNGNAPSGLPVWLYFFGAGVVGLVTSVAFVYITQYYTAGT
                     FRPVREIAEASKTGPATNIISGVAVGFETTFVTAITIGIALFASHWLGSQAGIVNADG
                     KDVGGIFGTAVATMGMLMTTAYILAMDTFGPITDNAGGIAEFSRAEAGAREITDRLDA
                     VGNTTKALTKGYAIASASLAAFLLFSAYIDKVNLIETNRGGTLLTSVNLADVNVFIAA
                     LIGAMLVYFFSSLAIRAVGTTAQAIIVEVRRQFREMPGIMDYTQRPDYARVVDITTRA
                     ALREMIAPGVVAVATPIIVGILLGAQAVAGLLMVGTIAGVLLATVLNNGGGAWDNAKK
                     YIESGNLKDAD"
BASE COUNT          255 a          486 c          570 g          248 t
ORIGIN      
        1 gtccgcgtcc ttgaggttgc cggactcgat gtacttcttg gcgttgtccc atgcccctcc
       61 gccgttgttg aggacggtgg cgagcaggac gccggcgatc gtgccgacca tcagcagccc
      121 ggccacggcc tgggccccga gcaggatgcc gacgatgatc ggggtggcga cggcgacgac
      181 gcccggggcg atcatctcgc gaagcgcggc acgggtcgtg atgtcgacga cgcgggcgta
      241 gtcgggtcgc tgcgtgtagt ccatgatccc gggcatctcg cggaactggc ggcgaacctc
      301 gacgatgatc gcctgggccg tcgtgccgac ggcgcggatc gcgagcgagc tgaagaagta
      361 gacgagcatc gcgccgatca gcgccgcgat gaacacgttg acgtcggcca ggttgaccga
      421 ggtcagcagc gtgccgccgc ggttggtctc gatgaggttg accttgtcga tataggccga
      481 gaacagcagg aaggccgcca gggaggccga cgcgatcgcg tagcccttgg tcagcgcctt
      541 ggtcgtgttg ccgacggcgt cgagccggtc ggtgatctcg cgggcgcccg cctccgcgcg
      601 gctgaactcg gcgatcccgc cggcgttgtc ggtgatcggg ccgaacgtgt ccatggccag
      661 gatgtaggcc gtggtcatca gcatgcccat cgtcgcgacg gccgtaccga agatgccgcc
      721 gacgtccttg ccgtcggcgt tgacgatgcc ggcttgcgag ccgagccagt ggctggcgaa
      781 cagcgcgatc ccgatggtga tcgcggtgac gaaggtggtc tcgaagccga ccgcgacccc
      841 ggagatgatg ttcgtcgcgg ggccggtctt ggacgcttcc gcgatctcgc ggacgggccg
      901 gaacgtgccg gcggtgtagt actgggtgat atagacgaac gcgacgctgg tcaccaggcc
      961 gaccacgccg gcgccgaaga agtacagcca gaccggcagg ccgctcgggg cgttgccgtt
     1021 cgtctgcatc atcacgttgg tgacgagcag gagtgccgcc gcggacagga tcgtggtgac
     1081 ccagtagccg cggttgagca tgttcatcgg gttctcgtct tcccggccgc ggatgaagaa
     1141 gatcgcgacg atcgtcgaca gcaggccgaa ggcgcgcacg acgagcggga agaagatcca
     1201 ggcctgcggg ttcggccagt tgttggcgac cgcgatggcg tacacgccga cgccgaggat
     1261 catcgcgccg atgttctcgg cggccgtcga ctcaaacagg tcggcgccac gaccggcgca
     1321 gtcaccgacg ttgtccccga ctaggtcggc gatgacgccg gcgttgcgcg ggtcgtcctc
     1381 ggggatgccg gcctcgacct tgccgacgag gtccgacccg acgtcggcgg ccttggtgta
     1441 gatcccgccg ccgagctggg cgaagagggc cacgaaggac gccccgaaac cgaagccgac
     1501 gatcaggaac ggtgcctggt tgaccgtgct gtcgttcagg ccgccgtaca gcgagaaga
//
LOCUS       DATDDI010000505         3337 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_52755, whole genome shotgun sequence.
ACCESSION   DATDDI010000505 DATDDI010000000
VERSION     DATDDI010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52755"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VIU37_07225"
     CDS             complement(<1..397)
                     /locus_tag="VIU37_07225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013779.1"
                     /translation="MRIFFATDVHGSEVCWRKFLNAGAFHKADVLIMGGDMTGKAMVP
                     IVATSDGWELSLQEQRHELSTEDELRAMEKRISDRGYYPVRLTRDELEAWSGDAALVD
                     ERFKAEILRGVARWMALADQRLANTGIRCV"
     gene            746..1897
                     /locus_tag="VIU37_07230"
     CDS             746..1897
                     /locus_tag="VIU37_07230"
                     /inference="COORDINATES: protein motif:HMM:NF024739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6013780.1"
                     /translation="MSTRPTKTRIAGLLATTAIVFAACSSTGASSAPSAAAPSAGESA
                     AAGGMDALIAAAKAEGGLTTIALPHSWCNYGEMLSNFTAKYGIPINELNPDGSSAQEV
                     DAITANKTNPGPQAPDVIDVGLSFGPQAKTDGLIAPYKVATWDSIPASAKDADGYWYG
                     DYYGVLSFEVNTSVVKNVPADWSDLLKPEYKGQVALAGDPTQSNQAISAVWAAAIANG
                     GSLDDATPGLDFFKKLNDAGNFVPVIGKTATVASGETPIRIAWTYNALGDKDSLAGNP
                     PITVAVPASGRFGGMYVQAISAYAPHPNAAKLWMEYLYSDEGQNVWLKGYCNPIRYDD
                     MVAKGTVDAAAQAKLPDTKGASLPTLDQITKATDVITKGWPTTVGATVK"
     gene            1932..2825
                     /locus_tag="VIU37_07235"
     CDS             1932..2825
                     /locus_tag="VIU37_07235"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6013781.1"
                     /translation="MTATTAQGAPVARPGRRRPGLAWLGLLPFLAFATLFLLIPTTYL
                     IVGSLQDKAGQFTLQNYEDLTGGIPINAYLTSIEISFVTAVSGGVFGFLLAYAVISGG
                     LPRPLRSGLMTFSGVASNFAGIPLALAFTFTIGRTGLLTLLLKDGLGVSVYDQGFSLY
                     TKLGLEITYFYFQLPLMILIIAPAIDGLKKEWREASENMGASSLQFWRYVALPVLMPS
                     LLGSMILLFGNAFGAQATAYQLTGGFINLVTILIGNQLTGDVLHNKGLGYALAMGMVA
                     ILGVTLLAYAWLQRRSERWLR"
     gene            2822..>3337
                     /locus_tag="VIU37_07240"
     CDS             2822..>3337
                     /locus_tag="VIU37_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013782.1"
                     /translation="MSGRPAFAGYPDSVDTVADSMVAPVAPRRSRRSLSSIAWWVVFI
                     GGVVYFALPLIGTFNFSLKSQPFLSAYTAIFDDPKFVSSLLYSFVIGLITIVVSIAII
                     VPTAFWVRLKVPRARPAIEFITLLPFVIPPIVLVFGLISTYSHPPLPFTHTDLGSSAL
                     LVAGYVILSFPY"
BASE COUNT          521 a         1216 c         1046 g          554 t
ORIGIN      
        1 cgacgcagcg gatcccggtg ttcgccagcc gctggtcggc cagcgccatc cagcgcgcaa
       61 cgccgcgcag gatctcggcc ttgaaccgct cgtcgacgag cgcagcgtcg cccgaccacg
      121 cctccagctc gtcgcgggtc agtcgaaccg ggtagtagcc gcgatcggag atccgcttct
      181 ccatcgcccg cagctcgtcc tcggtggaca gctcgtggcg ctgctcctgg aggctgagct
      241 cccagccgtc cgaggtggcg acgatcggga ccatcgcctt cccggtcatg tcaccgccca
      301 tgatcaggac gtccgccttg tggaaggcac cggcgttcag gaacttccgc cagcagacct
      361 ctgaaccgtg gacgtcggtc gcgaagaaga tcctcacccg gactccggcc tcccaactgg
      421 cggagcgcgc agtatagggt cggagcccga ggcggcgagg cgcgatcccg cccgccgcgc
      481 cggcccgtcc gacgacgtga ccgtcgtcgc accaaccgcg acgatcgcgg aatcgtggcg
      541 agcgatgatg ccgtggaaac gaatccccga catgctcttg acgcccgccg acgcgggctg
      601 tccaatgcgc gagtccgtgc aagcggctcc gtcgtccgcg agtttctcga gggcgaggtt
      661 cggggtcggt cgaggggaag aggaggtccc cggagcgcgt ccccgccgcc aatcgatcgc
      721 agcccgacac actggaggaa ccatcttgtc tactcgtccc acgaagaccc ggattgcggg
      781 tctcctggcc acgacggcca tcgtcttcgc cgcctgttca tcgaccgggg ccagctccgc
      841 cccgtcggcc gccgcgccgt cggccggcga gtccgccgcc gccggcggca tggatgccct
      901 catcgcagcc gcgaaggcgg agggtggcct gaccacgatc gccctgccgc acagctggtg
      961 caattacggc gagatgctgt ccaacttcac cgcgaagtac ggcatcccga tcaacgagct
     1021 caaccccgac ggtagctccg cccaggaggt cgatgccatc acggccaaca agaccaatcc
     1081 cggcccgcag gcgccggacg tcatcgacgt cggcctgtcg ttcggcccgc aggccaagac
     1141 ggacgggttg atcgcgccgt acaaggtcgc gacctgggat tcgatccccg cctcggccaa
     1201 ggacgccgac ggctactggt acggcgacta ctacggcgtg ctctccttcg aggtcaacac
     1261 gtcggtcgtc aagaacgtgc ccgccgactg gtccgacctg ctcaagcccg agtacaaggg
     1321 ccaggtcgcc ctcgccggcg atccgaccca gtccaaccag gccatctcgg cggtctgggc
     1381 ggcggccatc gccaacggcg gctcgctcga cgacgcgacc ccgggcctcg acttcttcaa
     1441 gaagctcaac gacgccggca acttcgtgcc ggtcatcggc aagaccgcga cggtcgcctc
     1501 gggcgagacg ccgatccgga tcgcctggac gtacaacgcc ctgggcgaca aggactcgct
     1561 cgccggcaac ccgccgatca ccgtcgccgt acccgcctcc ggccggttcg gcgggatgta
     1621 cgtgcaggcg atcagcgcct atgcgccgca tccgaacgcc gccaagctgt ggatggagta
     1681 cctctactcc gacgagggcc agaacgtctg gctgaagggg tactgcaacc cgatccgcta
     1741 tgacgacatg gttgccaagg gaacggtcga cgcggccgcg caggcgaagc tgcccgacac
     1801 caagggcgcc tccctgccga cgctcgacca gatcaccaag gccaccgacg tcatcacgaa
     1861 gggctggccg accaccgtcg gcgccacggt caagtagggc ccgccctctc gaccgtgtcc
     1921 agggtcacgc ggtgactgcg acaaccgccc agggtgcgcc ggtggcgcgc cctgggcgcc
     1981 gccggcccgg cctggcctgg ctcggcctgc tcccgttcct cgcgttcgcg accctgttcc
     2041 tgctgatccc gaccacctac ctgatcgtcg gcagcctcca ggacaaggcc ggtcagttca
     2101 cgctccagaa ctacgaggac ctgaccggcg gcatcccgat caacgcgtac ctgaccagca
     2161 tcgagatcag cttcgtgacc gcggtgtcgg gcggcgtctt cggcttcctg ctggcctacg
     2221 cggtcatctc aggcggcctg ccgcgaccgc tgcggtccgg cctgatgacc ttctcaggcg
     2281 tggcatcgaa cttcgccggc atcccgctcg cgctcgcgtt cacgttcacg atcggtcgca
     2341 ccggactgct gaccctcctg ctcaaggacg ggctcggggt cagcgtctac gaccagggct
     2401 tctcgctgta caccaagctt gggctggaaa tcacctactt ctatttccag ctgccgctga
     2461 tgatcctgat cattgccccg gcgatcgacg ggctgaagaa ggagtggcgc gaggcgtccg
     2521 agaacatggg cgcgagcagc ctccagttct ggcgctacgt ggcgctgccg gtgctgatgc
     2581 cgtctctcct gggctcgatg atcctgctgt tcgggaacgc cttcggcgcg caggcgaccg
     2641 cctaccagct gaccggcggc ttcatcaacc tcgtcaccat cctcatcggc aaccagctga
     2701 ccggcgacgt cctccacaac aagggcctcg ggtacgcgct ggcgatgggc atggtcgcca
     2761 tcctgggcgt cacgctgctg gcctacgcct ggctccagcg acggtcggag cgctggctgc
     2821 gatgagcggg cggccggcct tcgcgggata cccggactcc gtcgacacgg tggccgactc
     2881 gatggttgcg ccggttgcgc cgcggcgatc gcgccggtcg ctcagctcga tcgcctggtg
     2941 ggtcgtgttc atcggcggcg tcgtctattt cgcgctgccg ctgatcggga cgttcaactt
     3001 ctcgctcaag tcgcaaccgt tcctgtccgc ctacacggcc atcttcgacg atcccaagtt
     3061 cgtctcgagc ctgctctact cgttcgtcat cggcctgatc accatcgtgg tcagcatcgc
     3121 gatcatcgtg ccgaccgcgt tctgggtccg gctcaaggtg ccccgtgcgc gaccggcgat
     3181 cgagttcatc acgctgctcc cgttcgtgat cccgccgatc gtgctcgtgt tcggcctgat
     3241 cagcacctac agtcacccgc cgctaccgtt cacccatacc gacctcggga gcagcgcgct
     3301 gctggtggcg ggctacgtga tcctgtcgtt cccgtac
//
LOCUS       DATDDI010000506         2075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_31851, whole genome shotgun sequence.
ACCESSION   DATDDI010000506 DATDDI010000000
VERSION     DATDDI010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31851"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VIU37_07245"
     CDS             complement(<1..243)
                     /locus_tag="VIU37_07245"
                     /inference="COORDINATES: protein motif:HMM:NF013781.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY6013783.1"
                     /translation="MTDRPADPTARRRAWEAERLEPALRRAPERRTRFSTIGDTTIER
                     LYGPWSLADDAEARIGFPGEPPFTRGIHPTGYRGRLW"
     gene            complement(319..900)
                     /locus_tag="VIU37_07250"
     CDS             complement(319..900)
                     /locus_tag="VIU37_07250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013784.1"
                     /translation="MFATTRFRLVTLVLALTLAGCSSGASPSFDPTGPCTADGQAPGA
                     YPDLEARIPTTLLGERPTKVDSGRHCTTEALGSLAAAGIKEIRFAGGTWSFGAERSAA
                     LAVFTAPGLTADAMAEFYLAGASAASRTELLAGTAVTLAGRPGHRLDTQTGERLQTVE
                     VWPSMTGDMVNVVITNDLPDARIADAVAAFGGQ"
     gene            complement(1324..>2075)
                     /locus_tag="VIU37_07255"
     CDS             complement(1324..>2075)
                     /locus_tag="VIU37_07255"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY6013785.1"
                     /translation="RRRCPTLNVMAKRDPRDVLGVGDGASPAQIKAAWRRLARTNHPD
                     LTGDDPAASRAATTRMAEINDAYAALTRKPGRERAAARGAGDETTFEEARPRRGGPPP
                     PRPTRPVTGRVDMSQTFRARNQVLGGSGRRATPPGQPPLRNGPVHREPPRASTPTGPL
                     VRDRLRHFRRPPAPPLPEAQATVIEFGKFHGHTLGQIAAFEPSYIDWVASTVSHDPDL
                     VQAARVIQADLDVRGVARRAHVSVERRGRSA"
BASE COUNT          263 a          693 c          828 g          291 t
ORIGIN      
        1 ccagagacgg ccgcgatagc cggtcggatg gatgccccgg gtgaagggcg gctcgccggg
       61 aaatccgatc cgggcctcgg cgtcatcggc cagggaccac gggccgtaga gacgctcgat
      121 ggtggtgtcg ccgatcgtgg agaagcgggt ccggcgctcg ggcgcccggc gcagggctgg
      181 ttcgagtcgt tcggcctccc aggcgcgtcg acgggcggtc ggatcggccg gtcgatcggt
      241 catggcggcg actctagcag cggtgtccgg gactggccag accgcggccg gtccgggcgc
      301 ggggccgcgg tcccgacgtc actgcccgcc gaaggcggcg acggcgtcgg cgattcgtgc
      361 gtcgggcagg tcgttggtga tcaccacgtt gaccatgtca ccggtcatgg acggccagac
      421 ctcgacggtc tggagtcgct cgcccgtctg ggtgtccagg cggtggcccg ggcggccggc
      481 gagcgtcacc gcggtcccgg ccaggagctc ggttcgcgag gcggcgctcg caccggcgag
      541 gtagaactcg gccatggcgt cggcggtgag gcccggcgcc gtgaagacgg ccagcgccgc
      601 cgatcgttcg gccccgaacg accaggtgcc acccgcgaac cgaatttcct tgatcccggc
      661 cgccgcgagc gaaccgaggg cctcggtggt gcagtgccgg ccggagtcca ccttggtcgg
      721 ccgctcgccc aggagggtgg tcgggatccg ggcctcgaga tccgggtagg cgcccggggc
      781 ctggccatcc gcggtgcacg gaccggtcgg gtcgaagctc ggcgaagcgc cgctcgagca
      841 gcctgcgagg gtcagcgcga ggaccagcgt gacgaggcgg aaacgggtcg tggcgaacac
      901 ggcagtcagc gtagccccgg caccgtctcc acgctcggaa cggtgcgcgg tgccttgcgg
      961 caactggtac gggcgtcccg gttcggtgcg cgggtgcgcc cgaccatcga gcgctccgga
     1021 ccgggacgag ggtgccattg cgacctcgtg gacggggcgc gtaccgttcc tctcacgccg
     1081 acccgcgatc aaccggggga cacctggggt gtcggtcacg gaaccaggga cggacgatcg
     1141 atctcgaggc tgactcgagt cgaaggatct cggacctgga tcacgagccg agtaactgga
     1201 catcggccaa caggcctggg tgaccgtcgg gacggcagca ctcatcggga ttcatcagcg
     1261 ccaggatcgc cctccggtat cggggggcga tcgcgcattt tcggcggatc tccggcggcg
     1321 cgatcaggcc gagcgaccgc gccgctccac gctcacgtgc gcgcgccggg ccacgccgcg
     1381 gacatcgagg tcggcctgga tcacccgggc ggcctgcacc aggtcggggt catggctgac
     1441 cgtgctcgcc acccagtcga tgtaggacgg ctcgaacgcc gcgatctggc ccagcgtgtg
     1501 gccgtggaac ttgccgaact cgatgacggt cgcctgcgcc tccgggagcg gcggcgccgg
     1561 gggccggcgg aagtggcgga gtcgatcgcg cacgagcgga ccggtcgggg tggacgctcg
     1621 gggcggctcc cgatggacgg gtccgttgcg caggggcggc tggccgggtg gtgtggcccg
     1681 gcggccgctc ccgccgagga cctggttgcg tgcccggaag gtctggctca tgtccacgcg
     1741 gccggtgacc ggccgggtgg gtcgaggcgg tggcgggccg ccgcggcgcg gccgggcttc
     1801 ctcgaaggtc gtctcgtcgc cggctccgcg ggcggccgcg cgctcgcgtc ccggcttgcg
     1861 cgtaagggcc gcataggcgt cgttgatctc ggccatccgc gtggtcgcgg cccgggaggc
     1921 cgcggggtcg tcgccggtca ggtccgggtg attcgtcctg gcgaggcgcc gccaggccgc
     1981 cttgatctgg gccggcgagg cgccgtcgcc gacgccgagg acgtctcgcg gatcacgttt
     2041 ggccatcacg ttgagtgtag ggcaccggcg gcggc
//
LOCUS       DATDDI010000507         4138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_323122, whole genome shotgun sequence.
ACCESSION   DATDDI010000507 DATDDI010000000
VERSION     DATDDI010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323122"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..686
                     /locus_tag="VIU37_07260"
     CDS             <1..686
                     /locus_tag="VIU37_07260"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HEY6013786.1"
                     /translation="RGEAGGADARAYWAGVRIWLNGGDPYHPTGPFLPYVYAPWMLPL
                     FTPWAALPWDVAWFAWRVGTILLLLWTIDWAYRRRPLTTAVTVALLGFPFGANLDTGN
                     INLQLTLMLWAAQFTGPRVGGLLWALATWMKWIPVVHWLVLAPRTRWWGLLWLAVSIG
                     LSLVTLPLTIIQMQTLFGFGARPIRLDYLVYLWALVPWWYRAADPLAVLRPASWRAWV
                     AAARMRLVG"
     gene            complement(683..2026)
                     /locus_tag="VIU37_07265"
     CDS             complement(683..2026)
                     /locus_tag="VIU37_07265"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013787.1"
                     /translation="MDPAFVGPGPDGRPTIRLPNRELIRISLYWLGLSSIFAGLGTIL
                     TGRLEFTGLVDRQDAGRALFLVSISGAVIAMAVQPTIGSISDYTISRWGRRKPYILIG
                     SILDVVFLAGIAMSNTLVALAAFIALLQFSSNFAQGPFQGYVPDLVPAAQVGTASALV
                     GLMQVLGNVAGFVIGAIATATDQFGFGLIALGVLELVTMLSVVIRVREGPPPKSRAGR
                     SWRAVAAEAWGTDILAERSFLWLVASRLAILMGGSVLVQLATFYLARSMGLNQTDTGI
                     VLIPLTGLVAVGTVIAVVPAARVSDRVGRKPVIWASCAIGGTGLGIVAIAPMLPLAFL
                     GALVYGISAGIFLAVDWALMTDIIPKASSGRYMGLSNVATASSGVLAVAFGGTLMDLV
                     GGPEAGGLGPRAALAFGIVLLGVGAVLLRPVDERRREDRLAAEEAALATVEVAST"
     gene            complement(2085..2801)
                     /locus_tag="VIU37_07270"
     CDS             complement(2085..2801)
                     /locus_tag="VIU37_07270"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013788.1"
                     /translation="MCEHFIARAAEPFRLDELWPFAERLERFGIAGFGWGAAWIGPDG
                     RLASYRDVRAFRDDPGRERVGQHETTAALIHLRRPSRLSTLTHADTQPFDDPAGRFAF
                     SHNGDLRDYKGLREAFRRQGRIHGRADTEVGERWLEDAWRPDEPVAHLLASLHDRFGG
                     QANLAILTAGGSPHHYAGNGENPVFSFRLGRIGIASTGIYSLDRSLFRFVAPAATDRR
                     LIRVRSTVALDPRGDAVTGA"
     gene            complement(2794..3636)
                     /locus_tag="VIU37_07275"
     CDS             complement(2794..3636)
                     /locus_tag="VIU37_07275"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEY6013789.1"
                     /translation="MPEGDTLFRTAAGLRPYLVGRRVSAARTAGPGPVPRVERIVGQE
                     ITAVESLGKNLLIRFGNGLEIRTHLRMTGSWHRYRPGEPWRRPAGRARLVLEVPGAVA
                     VCFDAPVVELLEQRAEAIHPSLGRLGPDLLSPDFDQAEALRRLRDPARAEAPIAEALV
                     DQRALAGIGNVCKSEVLWLERVAPTEPVGGLDDATLSRLVATAGDLLRHNAERRAGPE
                     RVTTGRDRRAVGPLYVYGRAARPCRRCGTPIRSMRQGAELPRTTYWCPACQPAGALAS
                     AEHV"
     gene            complement(3644..>4138)
                     /locus_tag="VIU37_07280"
     CDS             complement(3644..>4138)
                     /locus_tag="VIU37_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013790.1"
                     /translation="GYFVDGLGAAQFALAGALDRLRAAREPADPPASGAVLLLAAADP
                     ANPFGAALPWPRRGETDRRPLQRAAGAYVVVVDGQAALYLERGGSTLQTLPAADHPEV
                     AVAAARSLGALVGDGRVRELVVRRVDGDDVALSPFRAVLLDAGFVAGYRGLAFRAARP
                     AAAR"
BASE COUNT          599 a         1505 c         1530 g          504 t
ORIGIN      
        1 cccggggcga ggccggcggt gcggacgcca gggcgtactg ggcaggcgtc cggatctggc
       61 tcaacggcgg tgacccgtac cacccgacgg ggccattcct gccctacgtc tacgcaccct
      121 ggatgttgcc gctcttcacg ccgtgggccg ccctgccctg ggacgtggcc tggttcgcct
      181 ggcgggtcgg gacgatcctt ctgctgctct ggacgatcga ctgggcgtac cgccgtcgcc
      241 cgctgaccac cgccgtcacc gtggcgctgc tcgggttccc gttcggggcg aacctcgaca
      301 ccggcaacat caacctccag ctgacgctga tgctgtgggc cgcgcagttc acgggaccgc
      361 gcgtcggcgg gctgctctgg gcgctggcga cctggatgaa gtggatcccg gtcgtccact
      421 ggctggtcct cgcgccacgg acgaggtggt ggggcctgct ctggctggcc gtgtcgatcg
      481 ggctcagcct ggtcacgctg cccttgacga tcatccagat gcagacgctg ttcggcttcg
      541 gggcgcgccc gatccgcctg gactacctcg tctacctgtg ggccctggtg ccgtggtggt
      601 accgcgccgc cgaccctctg gccgtcctgc ggccggccag ctggcgtgcc tgggtggccg
      661 ccgcgcggat gcggctcgtc ggctaggtcg aggcgacctc gaccgtcgcg agggccgcct
      721 cctcggcggc gagccgatcc tcgcggcgtc gctcgtccac cgggcggagg agaaccgcgc
      781 ccacgccgag caggacgatg ccgaacgcga gcgccgcccg agggccgagc ccgccggcct
      841 cggggccgcc gaccaggtcc atcagcgtgc cgccgaaggc cacggcgagg acgcccgacg
      901 aggccgtggc gacgttcgac aggcccatgt accgccccga cgaggccttc gggatgatgt
      961 ccgtcatcag cgcccagtcc accgccagga agatgccggc cgagatgccg tagaccagcg
     1021 cgccgaggaa ggcgaggggc agcatcggcg cgatggccac gatcccgaga ccggtcccgc
     1081 cgatcgcgca gctggcccag atgaccggct tccggccgac ccggtcggag acgcgcgccg
     1141 cgggcaccac ggcgatgacc gtcccgacgg ccaccaggcc ggtcagcggg atcagcacga
     1201 tgccggtgtc ggtctggttg aggcccatcg agcgcgccag gtagaacgtc gccagctgga
     1261 cgagcacgga tccgcccatc aggatcgcga gccgcgaggc gaccagccag aggaagcttc
     1321 gctcggcgag gatgtcggtc ccccaggcct cggcggcgac cgcacgccac gatcgcccag
     1381 cccgcgactt gggcggcggc ccttcgcgca cccggatgac gaccgacagc atcgtcacga
     1441 gctcgagcac gccaagcgcg atcaggccga acccgaactg gtcggtcgcg gtggcgatgg
     1501 cgccgatcac gaagccggcg acgttgccga ggacctgcat caacccgacg agcgcgctcg
     1561 ccgtgccgac ctgggcggcc ggcacgagat ccggcacgta gccctggaac ggtccctgcg
     1621 cgaagttcga gctgaactgg agcagcgcga tgaacgcggc cagcgcgacc agggtgttgc
     1681 tcatggcgat cccggcgagg aagacgacat cgaggatcga gccgatcagg atgtacggct
     1741 tgcgccggcc ccagcgcgag atcgtgtagt ccgagatcga cccgatcgtc ggctggaccg
     1801 ccatcgcgat caccgcgccg ctgatcgaca cgaggaagag cgcgcgcccg gcgtcctgcc
     1861 tgtcgacgag cccggtgaac tcgaggcggc cggtcaggat cgtgcccagc cccgcgaaga
     1921 tcgacgacag cccgagccag tagagcgaga tccggatcag ctcgcggttc ggcaggcgga
     1981 tcgtcgggcg gccatcgggc ccgggaccca cgaacgctgg atccatgtcg gcatccctcc
     2041 gcgtcgcgtg ccggggacgt gacggctgcg gcgccgtgcc catcctacgc gcccgtaaca
     2101 gcgtctccgc gcggatcgag cgcgacggtc gagcgcaccc ggatcagccg tcgatccgtg
     2161 gcggcggggg ccacgaaccg gaacagcgag cgatcgagcg agtagatccc ggtcgaggcg
     2221 atcccgatcc gtccgagccg aaacgagaag accgggttct cgccgttgcc ggcgtagtga
     2281 tgcgggctgc caccggcggt caggatcgcc aggttcgcct ggccgccaaa gcgatcgtgg
     2341 agcgaggcga gcaggtgggc gacgggctcg tcgggacgcc aggcatcctc gagccagcgc
     2401 tcgccgacct cggtgtcggc gcggccgtgg atccggccct gccgccggaa cgcctcgcgc
     2461 aggcccttgt agtcgcgcag gtcgccgttg tggctgaacg cgaagcgccc ggccgggtcg
     2521 tcgaacggct gggtgtcggc atgggtcagg gtggacagcc gcgacggccg gcggaggtgg
     2581 atgagggcgg ccgtcgtctc gtgctgcccc acccgctcgc gcccgggatc gtcgcgaaag
     2641 gcgcggacgt cgcggtacga cgcgagccgg ccgtcgggac cgatccaggc ggcgccccag
     2701 ccgaagccgg cgatcccgaa ccgctcgagc cgctcggcga acggccacag ctcgtcgagc
     2761 cggaagggct ccgcggcacg ggcgatgaag tgctcacaca tgttcggcgg atgctagcgc
     2821 cccggccggc tggcaggccg ggcaccagta cgtcgtgcgc ggcagctcgg caccctgtcg
     2881 catgctgcgg atcggcgtgc cgcagcgccg gcatggtcga gcggcgcggc cgtagacgta
     2941 gagcgggccg acggcgcggc ggtccctgcc cgtcgtcacc cgttccgggc cggcacgtcg
     3001 ctccgcgttg tgtcgcagca ggtccccagc cgtggcgacc agccgggaca gcgtggcgtc
     3061 gtcgaggccg ccgaccggct cggtgggcgc cacgcgttcc agccagagga cttcgctctt
     3121 gcagacgttg ccgatcccgg ccagcgcccg ctggtccacg agggcctcgg cgatcggcgc
     3181 ctcggcccgg gccggatcac gcaaccggcg gagggcctcg gcctggtcga agtccgggga
     3241 gagcaggtcc ggccccaggc gaccgagcga cgggtggatc gcctcggcac gctgctcgag
     3301 cagctcgacg accggcgcgt cgaagcagac cgcgaccgca cccgggacct cgagcaccag
     3361 gcgtgcccgg cccgccggcc ggcgccacgg ttcacccggc cgatagcgat gccacgagcc
     3421 ggtcatccgc aggtgggtcc ggatctcgag cccgttgccg aaccggatca gcaggttctt
     3481 gccgagcgac tcgacggcgg tgatctcctg gcccacgatc cgctccaccc gcgggaccgg
     3541 gccgggcccg gcggtccggg cggcgctcac gcgccggccg acgaggtacg ggcgcaggcc
     3601 ggccgccgtc cggaagagcg tgtcgccctc aggcactcgg gccttaccgc gcggcggcgg
     3661 gacgggcggc ccggaacgcg aggccccggt acccggcgac gaagccggcg tcgagcagca
     3721 cggcgcggaa cggcgagagc gcgacgtcgt caccgtcgac cctgcgaacc acgagctcac
     3781 ggacgcgacc gtcaccgacc agggccccga gcgaccgagc cgccgcgacg gccacctcgg
     3841 gatgatccgc ggccgggagc gtctggagcg tggacccacc ccgttcgagg tagagcgccg
     3901 cctgcccgtc gaccaccacg acatacgcgc cggccgcccg ttggagtggc cggcggtcgg
     3961 tctctccgcg gcgcggccag ggcagggcgg ccccgaacgg gttggcggga tccgccgcgg
     4021 cgagcaggag cacggcgccc gaggccggcg ggtcagccgg ctcgcgagcc gcccgcagcc
     4081 gatcgagggc acccgcgagc gcgaactggg ccgccccaag cccgtcgacg aagtagcc
//
LOCUS       DATDDI010000508         1661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_281652, whole genome shotgun sequence.
ACCESSION   DATDDI010000508 DATDDI010000000
VERSION     DATDDI010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281652"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VIU37_07285"
     CDS             complement(<1..551)
                     /locus_tag="VIU37_07285"
                     /inference="COORDINATES: protein motif:HMM:NF042862.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon-like protease helical domain-containing
                     protein"
                     /protein_id="HEY6013791.1"
                     /translation="MPDHPSLGPADLRRPTDPASLGFATTADLADLDEVVGQDRAVEA
                     VTFGVRMRREGYNLYALGPEGIGKQHVVRSFLEREAGAEPSPGDWAYVHSFDRPQQPR
                     ALRLPAGRATALRERMDRLVADLQATIPAAFDSPTYRERRAAAEDILKQRRDTALEAF
                     EHDAKQVGVGLVRTPIGLALGPIV"
     gene            complement(554..>1661)
                     /locus_tag="VIU37_07290"
     CDS             complement(554..>1661)
                     /locus_tag="VIU37_07290"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6013792.1"
                     /translation="FMTEKVESEPATGQSTLDRFDQDIAFYRSLPPTPAVYRNEKALA
                     DLMLGEHAFGYVGGAGSCAGCGEATAVRMLVAATRQVHGPESMGIVAATGCNSVFGST
                     YPFNPYLVPWTNSLFENAPAVALGIRSSWDAAGHPERRLWAFGGDGAMYDIGFQALSR
                     MVASGADIKVLVLDTQVYSNTGGQASTATFGGQVTKLSAYGKSLHGRPERRKELAKIL
                     MAHGEVYVAQTTPAHLNHFYRAVMEANEYPGPAVLVVYTACMPEHGIADDAATRQAKF
                     AVDSRAFPLFTYDPRRGESMAERLSLQGNPATKDDWAKAPDGTPIDFLAFARSEGRFR
                     QHFGKDGTPTPEILATQDDRLANWHSLQELAGIR"
BASE COUNT          220 a          572 c          624 g          245 t
ORIGIN      
        1 acgatcgggc cgagcgcgag cccgatcggc gtgcggacga ggccgacacc gacctgcttc
       61 gcgtcgtgct cgaaggcctc cagcgcggtg tcgcgtcgct gcttgaggat gtcctcggcg
      121 gccgcccggc gctcgcggta ggtcggcgag tcgaacgccg ccgggatcgt cgcctggagg
      181 tcggccacga ggcggtccat ccgctctcgg agcgcggtcg cccggcccgc cggcaggcga
      241 agcgcccggg gctgctgcgg ccggtcgaag ctgtggacgt aggcccagtc gccggggctc
      301 ggctccgcgc cagcctcccg ctcgaggaag ctccggacga cgtgctgctt gccgatgccc
      361 tccggtccca gggcgtagag gttgtaaccc tcgcgccgca tccggacgcc gaacgtgacc
      421 gcctcgaccg cgcgatcctg gcccacgacc tcgtcgaggt cggccaggtc ggcggtggtc
      481 gcgaacccga ggctcgccgg atcggtcgga cgccggaggt cggcaggacc gagcgacgga
      541 tggtccggca tggctagcgg atcccggcga gctcctgcag ggagtgccag ttggcgagcc
      601 ggtcatcctg ggtcgcgagg atctccggcg tcggcgtgcc gtccttgccg aagtgctgcc
      661 ggaagcggcc ttccgagcgg gcgaaggcga ggaagtcgat cggcgtcccg tccggcgcct
      721 tggcccagtc gtccttcgtc gcggggttgc cctggagcga cagccgctcg gccatcgact
      781 cgccgcgacg cgggtcgtag gtgaacagcg ggaaggcccg cgagtcgacc gcgaacttcg
      841 cctggcgggt cgccgcgtcg tcggcgatgc cgtgctccgg catgcacgcg gtgtagacga
      901 cgaggaccgc cgggcccggg tactcgttgg cttccatgac cgcccggtag aagtggttca
      961 ggtgggccgg cgtcgtctgg gcgacgtaga cctcgccgtg ggccatgagg atcttcgcca
     1021 gctccttgcg ccgctccggg cgcccgtgga gcgacttgcc gtaggccgag agcttcgtga
     1081 cctggccgcc gaacgtcgcc gtcgaggcct ggccgccggt gttcgagtag acctgcgtgt
     1141 cgaggacgag gaccttgatg tcggctcccg aggcgaccat ccgcgacagc gcctggaagc
     1201 cgatgtcgta catcgccccg tcgccgccga aggcccacag ccggcgctcc gggtgacccg
     1261 ccgcatccca gctggaccgg atcccgaggg ccacggccgg cgcgttctcg aacagcgagt
     1321 tcgtccacgg gacgaggtag ggattgaacg ggtaggtgct gccgaagacg ctgttgcagc
     1381 cggtggcggc gacgatgccc atcgactccg ggccgtggac ctggcgggtt gccgcgacga
     1441 gcatccggac ggcggtcgcc tcgccgcagc cggcgcacga gcccgcgccg ccgacgtagc
     1501 cgaaggcgtg ctcgccgagc atgaggtcgg ccagggcctt ctcgttgcga tacacggccg
     1561 gggtcggggg cagcgaccgg tagaacgcga tgtcctggtc gaaccgatcc agggtggact
     1621 gcccggtcgc gggctcgctc tcgaccttct cggtcatgaa c
//
LOCUS       DATDDI010000509         3746 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_281666, whole genome shotgun sequence.
ACCESSION   DATDDI010000509 DATDDI010000000
VERSION     DATDDI010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281666"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1138)
                     /locus_tag="VIU37_07295"
     CDS             complement(<1..1138)
                     /locus_tag="VIU37_07295"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY6013793.1"
                     /translation="MTIAPNDFTHLHVHSEFSLLDGLGRITELVDAAAQHGMDSLAIT
                     DHGALYGAVAFYQAAKTKGIKPIIGVETYVARRSMTDKEGKADAQPFHLVLLAQDWTG
                     YQNLCRLITDAHIDGYYYKPRIDREHLARHSAGLIGLSACLTGEIPRALESEDWELAR
                     NLAGEYGDIFGKDHFYLELQDHGLPDQRRLNEQLLRLAPETGLPLVVTNDLHYVRPDQ
                     SEAHDVLLCVGTGNNLDTPNRMRFETNEFYVKSAAEMAALFPDNLDAIRNTRRIAEMT
                     GIELPLGQLRIPHFPVPDGHTTESWLRAECQRGLERRYGTVTPELQARLDYELGVILS
                     MGYAGYFLIVADFIQFAREQGIQTTCRGSAPGSIVTYTLGITPVD"
     gene            1206..1583
                     /locus_tag="VIU37_07300"
     CDS             1206..1583
                     /locus_tag="VIU37_07300"
                     /inference="COORDINATES: protein motif:HMM:NF018021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase family protein"
                     /protein_id="HEY6013794.1"
                     /translation="MNPSDVDDEAMESMVVDALERLPEPFRERLGSVAIVIEDEADPT
                     QLASVGARGLFGLYQGIPRTRLSADAAPTPSKITIFRGPIVRASPDPDALADLVTETV
                     YHEIAHHFGISDERLHELQRGGR"
     gene            1852..3057
                     /locus_tag="VIU37_07305"
     CDS             1852..3057
                     /locus_tag="VIU37_07305"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY6013795.1"
                     /translation="MRNRSLGLTLFAGLSILVAACSSSGATASPSAEPSVAAPSESAA
                     APSVEPSVAPSESAAPQSDLKIGVVTDIGTLNDKGYNEYSFKGAEDGAAEIGAPAPQS
                     TVPKDASEYGADIQAFVDQKYNIIVTVGFNLTADTVKAAKANPDIHFVGVDQSPVCVD
                     EQGNPDATFACKGDAKTVLPNYTSLYFAEDQAGYLAGIVAAYASKTGSIGAIGGTTLC
                     APCVRYIQGYELGAKSVKPDIKVASAYVTNDFSAAAFNDPAGGKAFAQTFLKAHKSDV
                     LFAVAGKTGNGVLEAACAAKIYGVGVDVDQWVSLGAPANACLITSAEKHVESAVKQAI
                     TGIAANTLAAGDVLFNAQNDGIGASPFHDAASLFGPEVQTALDTALAGMKDGSLKTCP
                     DTDCGVYKP"
     gene            3146..>3746
                     /locus_tag="VIU37_07310"
     CDS             3146..>3746
                     /locus_tag="VIU37_07310"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013796.1"
                     /translation="MTDPAEPIVAPALEMRGITKRYPGVVANDAITLEVHPGEIHALL
                     GENGAGKTTLMNVLYGLATPDEGEVLLNGTPVKIAGPADAIARGISMVHQHFMLVPVL
                     TVAENILLGEETMANRFFLDRKEAHRRIVDLGKRYGFDIDPEAPVESLSVGWQQRVEI
                     LKALYRQARILVLDEPTSVLTPQETSEIFTVLRRLAAEGH"
BASE COUNT          599 a         1317 c         1265 g          565 t
ORIGIN      
        1 gatcgaccgg ggtgatcccg agcgtgtagg tcacgatcga gccgggcgcc gagccgcggc
       61 aggtcgtctg gatcccctgc tcgcgggcga actggatgaa gtcggcgacg atgaggaagt
      121 accccgcgta gcccatcgac aggatcacgc cgagctcgta gtcgagccgg gcctggagct
      181 ccggcgtcac cgttccatag cgacgctcca gcccgcgctg gcactcggcg cgcagccagc
      241 tctccgtggt gtggccgtcc ggcactggga agtgcgggat ccgcagctgg ccgagcggca
      301 gctcgatgcc ggtcatctcg gcgatccgcc gtgtgttccg gatcgcgtcg aggttgtccg
      361 ggaagagcgc ggccatctcg gcagccgact tcacgtagaa ctcgttggtc tcgaagcgca
      421 tccggttggg cgtgtccagg ttgttgcccg ttccgacgca cagcaggacg tcgtgcgcct
      481 cggactggtc gggccggacg tagtggaggt cgttggtgac gaccagcggg agcccggtct
      541 cgggggccag ccggagcagc tgctcgttga gccggcgttg gtcgggcagc ccgtggtcct
      601 ggagctccag gtagaaatgg tccttgccga agatgtcgcc gtactccccg gccaggttcc
      661 gcgcgagctc ccagtcctcg ctctcgagcg ctctcgggat ctcgccggtc aggcaggccg
      721 acaggccgat gagaccggcg ctgtgacggg cgaggtgctc gcggtcgatg cgcggcttgt
      781 agtagtaccc gtcgatgtgc gcgtccgtga tcaggcggca caggttctgg tagccggtcc
      841 agtcctgggc gaggaggacg aggtggaatg gctgggcgtc ggccttgccc tccttgtcgg
      901 tcatcgatcg gcgggcgacg taggtctcga cgccgatgat cggcttgatc cccttggtct
      961 tcgccgcctg gtagaacgcg accgcgccgt acagcgcccc gtggtcggtg atcgcgagcg
     1021 agtccatccc gtgctgggcg gccgcgtcga cgagctccgt gatccgcccc aggccgtcca
     1081 gcaggctgaa ttccgagtgg acgtggaggt gggtgaagtc gttcggggcg atggtcacgg
     1141 gggtcaatgg tagcggcggg tcgccggtcc cgccgatatg ggatcgaccc gctagagtgc
     1201 gttcaatgaa cccctccgac gtcgacgacg aagccatgga atcgatggtc gtggacgcgc
     1261 tcgagcgact gccggagccc ttccgggagc ggctcgggtc ggtcgccatc gtgatcgagg
     1321 acgaggcgga cccgacgcag ctggcatcgg tcggggcgcg cggcctgttc gggctgtacc
     1381 agggcatccc caggacgcgg ctgtcggccg acgccgcgcc gacgccgagc aagatcacca
     1441 tctttcgcgg tccgatcgtc cgggccagtc ccgacccgga cgcgcttgcc gacctcgtga
     1501 cggagacggt ctaccacgag atcgcccatc acttcgggat ctccgacgag cgcctccacg
     1561 agctgcagcg cggcggtcgc tgagaggcag gcggtaccac gcgaggcccg gcaggacctg
     1621 cgggatccgg tcgaccgcga ccgttgacga accgcgcggg ggccgcgcga aaccgcggcg
     1681 cgaggcctat cctgcacttc gaccagccat ccggcccttg ccccgtgagg tactcggtcg
     1741 gtaggatgcg agacattggc ggctccatcg gggccgccgc ccgccgttca gcgcgatcca
     1801 tgggtagcag cccgtcacgg acgcctggac cgcgaacctg gaggaggaaa catgcgcaac
     1861 cgctccctcg gactgaccct gttcgcaggg ctgtccatcc tcgtcgccgc ctgtagctcg
     1921 agcggcgcga cggcgtcacc gtcggccgag ccttcggtcg cggcgccgag cgagtccgcc
     1981 gccgccccgt ccgtcgagcc gtcggtcgcg ccgagcgaat cggccgcgcc gcagtccgac
     2041 ctcaagatcg gcgtcgtcac cgacatcggc accctgaacg acaagggcta caacgagtac
     2101 agcttcaagg gcgccgagga tggcgcggcc gagatcggcg cacccgcccc gcagtccacc
     2161 gtcccgaagg acgcgtccga gtacggcgcc gacatccagg cgttcgtcga ccagaagtac
     2221 aacatcatcg tcaccgtcgg cttcaacctg acggccgaca cggtcaaggc cgccaaggcc
     2281 aatccggaca tccacttcgt gggcgtcgac cagtccccgg tctgcgtcga cgagcagggc
     2341 aacccggacg cgacgttcgc ctgcaagggc gacgcgaaga ccgtcctccc gaactacacc
     2401 tcgctgtact tcgccgagga ccaggccggc tacctggccg gcatcgtcgc cgcctatgcc
     2461 tcgaagaccg gctcgatcgg cgccatcggc ggcaccaccc tgtgcgcgcc gtgcgttcgc
     2521 tacattcagg gctatgagct cggcgccaag tccgtcaagc cggacatcaa ggtcgcgtcc
     2581 gcgtacgtga cgaatgactt ctccgcggcc gcgttcaacg acccggccgg cggcaaggcg
     2641 ttcgcccaga ccttcctcaa ggcccacaag tccgacgtcc tgttcgcggt cgccggcaag
     2701 accggcaacg gcgtcctcga ggccgcctgc gcggccaaga tctacggcgt cggcgtcgac
     2761 gtcgaccagt gggtctcgct cggtgctccg gccaacgcgt gcctgatcac cagcgccgag
     2821 aagcacgtcg agtctgcggt caagcaggcc atcaccggga tcgcggccaa cacgctggcc
     2881 gccggtgacg tcctgttcaa cgcccagaac gacggaatcg gcgcgtcgcc gttccacgat
     2941 gccgccagcc tgttcggtcc cgaggtccag acggccctcg acaccgccct cgccggcatg
     3001 aaggacggct cgctcaagac ctgccccgac accgactgcg gcgtctacaa gccgtaacga
     3061 tccgggaccc atcgctggaa cgggtcggcc ggcaacggcc ggcccgttcc gcataccacc
     3121 tccgtacgtc cggagcgccc cacccatgac ggacccggcg gaaccgatcg tcgctccagc
     3181 cctcgagatg cgcggcatca caaagcgcta cccgggcgtg gtcgccaacg acgccatcac
     3241 cctcgaggtc catccgggcg agatccacgc cctcctcggc gagaacgggg cgggcaagac
     3301 gaccctcatg aacgtcctgt acgggctggc cacgcccgac gagggcgagg tcctcctcaa
     3361 cgggacgccg gtcaagatcg cgggaccggc cgatgccatc gcccgcggca tcagcatggt
     3421 ccaccagcac ttcatgctgg tcccggtgct gaccgtggcg gagaacatcc tcctcggcga
     3481 ggagacgatg gcaaatcggt tcttcctcga ccgcaaggag gcccaccggc ggatcgtcga
     3541 cctggggaag cggtacggct tcgacatcga cccggaggcc ccggtcgagt cgctgtcggt
     3601 cggctggcag cagcgcgtcg agatcctcaa ggcgctctac cgccaggcgc ggatcctcgt
     3661 cctcgacgag ccaacgtccg tgctgacgcc ccaggagacg tccgagatct tcacggtcct
     3721 ccgccgcctc gcggccgagg gccaca
//
LOCUS       DATDDI010000510         2868 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_385865, whole genome shotgun sequence.
ACCESSION   DATDDI010000510 DATDDI010000000
VERSION     DATDDI010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385865"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1488
                     /locus_tag="VIU37_07315"
     CDS             <1..1488
                     /locus_tag="VIU37_07315"
                     /inference="COORDINATES: protein motif:HMM:NF013887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional shikimate kinase/3-dehydroquinate
                     synthase"
                     /protein_id="HEY6013797.1"
                     /translation="ERDAIAELGPADPDPEIRRVIATGGGAVVDPRNRWSLYRGRATV
                     WLDGRPEVLAQRLRRSPNVRPLVAGRDPIGAIRDLGVRRARFYAAADVHQSGISEVQG
                     VVDSLDERLARLRADERGGGTVLLRAETPIGRIVIGDGIVAGALAAELEALDAKRAIL
                     VSEPGAWEAVGAVIETGLRGRGWDVARVMLPQGEAAKRLDVVETAARELARLRAERSE
                     PLVAVGGGALGDTAGFLAATYLRGVPVIQVPTTLVAQIDSSIGGKTGVDLPEGKNLVG
                     AFHQPAAIVIDVDLLRTLPERQLRAALGEAVKMAALGDERLFELLETDGPLIARGHPS
                     AFGRGYVAEVVERCAWAKVDVVVADERERRPSGGRITLNLGHSLGHAVEAAAGYGDLL
                     HGEAVAYGLRAAARIGVEAGVTPRERAVRIGALLDRLGLATEPLPYSLETVMAHLATD
                     KKHAGGQLRWILPAADGVVVRDDIEPDLVDRAATSLLAAGAGAPQ"
     gene            1485..1958
                     /locus_tag="VIU37_07320"
     CDS             1485..1958
                     /locus_tag="VIU37_07320"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF003807.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEY6013798.1"
                     /translation="MTTVLVLEGPNLNLVGTREPEIYGRESLDEIHAGIATQAAELGL
                     AVDFYQSNHEGALIDRLHQRDFDVAIVNAGGLTHTSVSLRDALLAVQRPFIEVHLSDP
                     STREAFRQVNFLHDIALESIVGQGARGYHLALQSIARRFGGGASRAGGDVGHAHD"
     gene            1951..2274
                     /locus_tag="VIU37_07325"
     CDS             1951..2274
                     /locus_tag="VIU37_07325"
                     /inference="COORDINATES: protein motif:HMM:NF013939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEY6013799.1"
                     /translation="MTDRSAETAELRRLRLRIDALDRRIVALLNERAELAREAGLAKA
                     AAGRRAIRDAEREREVLLRVTMANSGPLAQADLVALYRRLMAATRALEARDRARRDGA
                     ADATD"
     gene            2249..>2868
                     /locus_tag="VIU37_07330"
     CDS             2249..>2868
                     /locus_tag="VIU37_07330"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HEY6013800.1"
                     /translation="MARPTRPTEPAGAPQARIATSATAWTRFAPAPTGFLHLGHVANA
                     IFVWGLAAVLGARVLLRIEDHDRERSRPAYEAALLEDLAWLGFVPDAGPVRQADDPSP
                     YLAAVERLRTAGLVYACACTRSTFAAFAANHGGPWRGPGCPGQCREQQIPEDPWCTLR
                     VVLGPGEEAWPDRLLGGMAAPASPAGDLAIRDRQGNWTYALCVVVD"
BASE COUNT          363 a         1058 c         1079 g          368 t
ORIGIN      
        1 gaacgcgacg cgatcgccga gctcgggccg gccgaccccg acccggagat ccgccgggtg
       61 atcgccacgg gcggcggggc ggtggtcgac ccgcggaacc gctggtcgct gtaccgcggc
      121 cgggccaccg tctggctcga cgggcggccc gaagtcctcg cccagcgact gcgccgctcg
      181 ccgaacgtcc gaccgctcgt cgccgggcgc gacccgatcg gcgcgatccg ggacctcggc
      241 gtccgccgcg cccggttcta tgcggccgcc gacgtccatc agtccgggat ctcggaggtc
      301 cagggcgtcg tcgactcgct cgacgagcgg ctcgcgcgcc tgcgtgccga cgagcgcggc
      361 ggcggaaccg tgctccttcg agccgagacg ccgatcggcc ggatcgtcat cggcgacggc
      421 atcgtggcgg gcgcgctggc cgcggagctc gaggcgctcg atgcgaaacg ggcgatcctc
      481 gtcagcgagc ccggcgcctg ggaggccgtc ggcgcggtga tcgagaccgg ccttcgcgga
      541 cgcggctggg acgtggcgcg cgtgatgctc ccgcagggcg aagcggccaa gcggctcgac
      601 gtcgtcgaga ccgcggcccg cgagctggcg cgccttcgcg cggaacggtc cgagccgctc
      661 gtcgcggtcg gcggcggcgc gctcggcgac acggccgggt tcctggcggc cacctacctg
      721 cgtggcgtac cggtcatcca ggtcccgacc acgctggtcg cccagatcga ttcgtcgatc
      781 ggtggcaaga ccggcgtgga cctgcccgaa ggcaagaacc tcgtcggtgc gttccaccag
      841 ccggccgcga tcgtcatcga cgtggacctc ctccggacgc tccccgagcg ccagctgcgg
      901 gcggcgctcg gcgaagcggt gaagatggcc gcgctcggtg acgaacggct gttcgagctg
      961 ctcgagaccg acggcccgct gatcgcccgg gggcacccgt ccgcgttcgg gcgcgggtac
     1021 gtcgcggagg tcgtcgagcg ctgtgcgtgg gccaaggtcg acgtcgtcgt ggccgacgaa
     1081 cgcgagcgtc gcccgagcgg cggccggatc acgctcaacc tcgggcactc gctgggccac
     1141 gccgtcgagg ccgccgccgg ctacggcgac ctgctccatg gcgaggcggt ggcgtacggg
     1201 ctgcgggcgg ccgcccggat cggggtggaa gcgggggtca cgcctcgcga gcgggccgtg
     1261 cggatcggcg cactcctcga ccggctcggc ctcgcgaccg agccgctccc ctactcgctc
     1321 gagacggtga tggcccacct ggcaacggac aagaagcacg ccggcgggca actccgctgg
     1381 atcctgccgg ccgcggacgg cgtggtcgtc cgcgacgaca tcgagcccga cctggtggat
     1441 cgtgcggcga cgagcctgct ggcggccggc gccggggcgc cgcagtgacg acggtcctgg
     1501 tcctcgaggg accgaacctg aacctggtcg ggacgcgtga gccggagatc tacggtcgcg
     1561 agtcgctcga cgagatccat gccgggatcg cgacgcaggc ggccgagctc ggcctggcag
     1621 tcgacttcta ccagtcgaac cacgagggcg ccctgatcga ccggctccac cagcgcgact
     1681 tcgacgtcgc gatcgtcaac gccggcgggc tgacccacac cagcgtgtcg ctgcgcgacg
     1741 cgctgctcgc cgtccagcgg ccgttcatcg aggtgcacct gtccgacccc tcgacacgcg
     1801 aggcgttccg gcaggtcaac ttcctccacg acatcgcgct cgagtccatc gtcgggcagg
     1861 gcgcccgggg ataccacctg gcgctccagt ccatcgcccg gcggttcggc ggtggtgcca
     1921 gccgcgccgg cggcgacgtg ggccacgccc atgactgatc gatccgccga gaccgccgag
     1981 ctccggcggc tgcgcctgcg gatcgatgcc ctcgatcgca ggatcgtggc gctgctgaac
     2041 gagcgggccg agctcgcacg ggaggccggc ctggcgaagg cggccgcggg ccggcgcgcg
     2101 atccgggatg ccgagcgcga gcgcgaggtc ctgctccggg tgacgatggc caactcgggc
     2161 ccgctcgccc aggccgacct ggtcgcgctg taccgccgac tgatggccgc cacgcgggcg
     2221 ctcgaggcac gcgaccgggc tcgtcgcgat ggcgcggccg acgcgaccga ctgagccagc
     2281 cggcgcaccg caggcacgga tcgccacctc cgcgaccgcc tggacgcgat tcgcgccggc
     2341 gcccacgggg ttcctccacc tcggccacgt cgccaacgcg atcttcgtgt gggggctggc
     2401 ggcggtcctg ggcgccaggg tgctgctgcg gatcgaggac cacgaccgcg agcggagccg
     2461 cccggcctac gaggccgcgc ttctcgagga cctcgcctgg ctcgggttcg tcccggacgc
     2521 cggtccggtc cgccaggccg acgacccttc cccgtacctg gcggccgtcg agcggctgcg
     2581 cacagccgga ctcgtgtacg catgcgcctg cactcggtcg acgttcgcgg cctttgccgc
     2641 caaccacggc ggtccgtggc gcgggccggg ctgccccggg cagtgccgcg agcagcagat
     2701 cccagaggac ccgtggtgca ccctcagggt ggtgctgggc ccgggcgagg aggcctggcc
     2761 ggaccggctg ctcggaggga tggcggcgcc cgcgtcgccg gcgggggatc tcgccatccg
     2821 ggatcggcag ggcaactgga cctacgccct gtgcgtcgtc gtcgacga
//
LOCUS       DATDDI010000511         5726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_198607, whole genome shotgun sequence.
ACCESSION   DATDDI010000511 DATDDI010000000
VERSION     DATDDI010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5726
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198607"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VIU37_07335"
     CDS             <1..215
                     /locus_tag="VIU37_07335"
                     /inference="COORDINATES: protein motif:HMM:NF020907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEY6013801.1"
                     /translation="DRLNAAYEERFGFRYCVFVDGRTRAELLPGMVAALDAARADEIS
                     RALDAVVDIARDRAARPGIAAREATS"
     gene            212..1060
                     /gene="pucL"
                     /locus_tag="VIU37_07340"
     CDS             212..1060
                     /gene="pucL"
                     /locus_tag="VIU37_07340"
                     /inference="COORDINATES: protein motif:HMM:TIGR03383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004846 - urate oxidase activity [Evidence
                     IEA];
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urate oxidase"
                     /protein_id="HEY6013802.1"
                     /translation="MIELGANRYGKAAIHLVRVHRDPAGHRISDVTVAIALEGDFERS
                     YTDGDNSLVVATDTMKNTAYAFAKDRLDGALEDYGRALAEHFVAFRQVDRATVSIRGH
                     DWAAIDVAGAPARDAFVRGGEGTRVATVSATPGGTTVQAGIEDLVLLKTTRSGFSGFP
                     RDRYTTLPETDDRLMATRLSAIWRYGSPDLDADLTFAAIRATLLEVFADHDSPSVQAS
                     IWIMGREILRRHEEVDEVRMVLPNLHHWLADLAPFGLANDGEVYVSTTEPHGLIEATV
                     RRGEDA"
     gene            1062..2636
                     /gene="aceB"
                     /locus_tag="VIU37_07345"
     CDS             1062..2636
                     /gene="aceB"
                     /locus_tag="VIU37_07345"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HEY6013803.1"
                     /translation="MPVPGVDVRRGPVPGSDRVLTDPALAFVADLQRRFGPIRLDLLR
                     RREERQAELDAGVRPDFLAATRETREADWRVAPAPADLDDRRVEITGPAEPKMMINAL
                     NSGARVFMADLEDALSPTWANVVGGQAALMDAVRRELAFDSPEGKTYRLNDRTATLLV
                     RPRGWHLVESGVLVDGVPISASLFDFGLYLFHNGAELLRRGSGPYVYLPKLESHAEAR
                     LWNDVFVAAQAAIGIPRGSIRATVLIETILAAFEMDEILSELREHAAGLNAGRWDYLF
                     SGIKKLRAWQELEVPDRAQLTMTVPFMRAYTELLVRTCHRRGAHAIGGMAAFIPNRRD
                     PAVTEVALARVREDKERESADGFDGTWVAHPDLVPIATEVFDRVLGARPHQKDRLREE
                     VRVGAAQLLDLRVPGGAVTEAGVRADVRVALAYLDSWLRGNGAAAIDNLMEDAATAEI
                     ARSQLWFWRSRGVRLDDGRAMDAELYRRIRDEELARLGRPATGRLADAAGLLDRLVLD
                     DEFAEFLTLRAYSVLE"
     gene            2633..3418
                     /locus_tag="VIU37_07350"
     CDS             2633..3418
                     /locus_tag="VIU37_07350"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013804.1"
                     /translation="MSPDPADVMDALSAYQAELNRRIPGFDGLVAPDVVLASIGLPVA
                     RANSANAARFTATSADARIGDVIAWFEARGLPFAWHAGPADRPDDLRRRLVDRGFVLG
                     PDEMPGMVARLDALPRLEMPAGATLERVGDLPTFREWLDVVVAGFGMPAMMGEAFMRF
                     GGLGFGPGMPELLLARLDGRPVAVALAAVAGGGLIISNVTTLPDARGRGLGRAVTLAA
                     MHHGAAAGVPVAVLQATEMGRGIYQRLGFEDFGWYGTLTWEGR"
     gene            complement(3505..4908)
                     /gene="hydA"
                     /locus_tag="VIU37_07355"
     CDS             complement(3505..4908)
                     /gene="hydA"
                     /locus_tag="VIU37_07355"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HEY6013805.1"
                     /translation="MTDLVVRGGTVVTATGSRRADVAIRGGRIAAIEPDLQGPAATAD
                     DVVDATGLLVLPGVIDAHTHTRVAVDDQPDRFFQDSVAAALGGTTSFLAFNNPGTGSS
                     PAAERSLLAGLREWRAVTAGDCAIDYAVSLVVSGRMDDPVAELPSVVDAGVPTCKAFM
                     IFDFRLDDRRLYDAMRVMGERGAMLEVHCEDPVLLDTAIETALQRGDVLPRYHAGTRP
                     SYVEAVATARAMAFGRQSGAPVHVVHLSSADALRETRDGRATGVRVSVETCPHYLVLT
                     EERYADPDPVGCARFMIAPPLRTPADRDALWRGLADGSIDMVVSDHVPDRLAVEKAEA
                     ANGVPFNQISNGAPGIGTLLTLVYSEGVARGRISVERMVDLLATTPARRFGFGRKGAL
                     EVGRDADLVLFDPSANRTILAGDLQQSSDYTPYEGMTVSGAVRDVFVRGRPVVRGGRF
                     VGTRGTGQFVERGSPDI"
     gene            complement(4916..5341)
                     /locus_tag="VIU37_07360"
     CDS             complement(4916..5341)
                     /locus_tag="VIU37_07360"
                     /inference="COORDINATES: protein motif:HMM:NF024307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3830 family protein"
                     /protein_id="HEY6013806.1"
                     /translation="MGTLRITVGDLHCSARWETEAAPRTVEAIRRMLPIESKLIHCRW
                     SGESTWIPFGDFRPGLDYENHTSHPAPGQLAIYPGGISECEIFFPYGACTTASKVGQL
                     AANHFATVVPDDGWQDLLREIGRRCLWEGAQPIRIVEAD"
     gene            5401..>5726
                     /locus_tag="VIU37_07365"
     CDS             5401..>5726
                     /locus_tag="VIU37_07365"
                     /inference="COORDINATES: protein motif:HMM:NF012785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEY6013807.1"
                     /translation="MLDTELGKPAVGVHVTLYRLSDDGRPLRLTQALTDGDGRVRDLL
                     ERPLVVGDYRLEFGLAPIAAVDTAPVEPAVERFFRRVAIDLRVADASRSYHVPLLLAP
                     YSITTYR"
BASE COUNT          778 a         2088 c         2056 g          804 t
ORIGIN      
        1 tcgaccggct caacgcggcg tacgaggagc ggttcgggtt ccgctactgc gtcttcgtgg
       61 acggccggac gcgggccgag ctcctgcccg gcatggtcgc cgcgctcgac gccgcccgcg
      121 cggacgagat cagccgggcg ctggacgcgg tcgtcgacat cgcccgggat cgggccgcac
      181 gcccggggat cgcagcgagg gaggcgacgt cgtgatcgag ctcggagcga accgctacgg
      241 caaggccgcc atccacctcg tccgggtcca tcgcgacccc gcgggccacc ggatcagcga
      301 cgtgacggtc gcgatcgcgc tcgaaggcga cttcgagcgc tcgtacaccg acggcgacaa
      361 ctcgctggtg gtcgccaccg acacgatgaa gaacaccgcc tacgccttcg ccaaggatcg
      421 cctcgacggt gcgctcgagg actacggccg ggcgcttgcc gagcatttcg tcgcgttccg
      481 ccaggtcgac cgggcgaccg tgagcatccg cggccacgac tgggccgcca tcgacgtggc
      541 cggcgccccc gcgcgcgacg cgttcgttcg cggcggcgag gggacgcgcg tcgccacggt
      601 ctcggccacc ccgggcggca cgaccgtcca ggccggcatc gaggacctcg tcctgctcaa
      661 gacgacccgt tccgggttca gcgggttccc gcgtgaccgc tacacgacgc tacccgaaac
      721 cgacgaccgg ctgatggcga cccggctgtc ggccatctgg cgatacggct cgcccgatct
      781 cgacgcggac ctgaccttcg ccgcgatccg cgcgacgctg ctcgaggtct tcgccgacca
      841 cgacagcccg tcggtccagg cctcgatctg gatcatgggt cgcgagatcc tgcgccggca
      901 cgaggaggtc gacgaggtcc ggatggtcct gcccaacctg caccactggc tggccgacct
      961 cgcgccgttc gggctcgcca acgacggcga ggtctacgtc tcgacgacgg agccccacgg
     1021 gctgatcgag gcgaccgtcc gccgcggcga ggacgcctga cttgccggtt cccggcgtgg
     1081 acgtccggcg agggccggtc ccggggtccg accgggtcct gaccgatccg gcgctcgcct
     1141 tcgtggccga cctccagcgc cgcttcggac cgattcggct ggatctgctc cgtcgccggg
     1201 aggaacgtca ggccgagctg gacgcgggcg tccggcccga cttcctcgcc gccacccgcg
     1261 agactcgcga ggcggattgg cgggtcgcgc cggccccggc cgacctcgac gatcgccggg
     1321 tcgagatcac cgggccggcc gagccgaaga tgatgatcaa cgcgctcaac tcgggcgccc
     1381 gggtgttcat ggccgatctc gaggacgcgc tgtcgccgac ctgggcgaac gtggtcggcg
     1441 gccaggccgc gctgatggac gccgtacgtc gcgagctcgc gttcgactcg cccgagggca
     1501 agacctaccg gctgaacgat cggacggcga cgctcctcgt ccggccgcgc ggctggcacc
     1561 tggtcgagtc cggcgtgctc gtggacggtg tcccgatctc cgccagcctg ttcgacttcg
     1621 ggctgtacct gttccacaac ggcgccgagc tgctgcgacg ggggagcggc ccgtacgtct
     1681 acctgcccaa gctcgagagc cacgccgagg cccggctctg gaatgacgtc ttcgtcgcgg
     1741 cccaggcggc catcggcatc ccgcgcggct cgatccgggc gacggtcctg atcgagacga
     1801 tcctcgccgc gttcgagatg gacgagatcc tgtccgagct ccgcgaacac gccgccgggc
     1861 tgaacgccgg ccgctgggac tacctgttca gcgggatcaa gaagctgcgc gcctggcagg
     1921 agctggaggt gccggaccgt gcccagctga cgatgaccgt gccgttcatg cgtgcctaca
     1981 ccgagctgct cgtccggacc tgccaccgcc gcggcgccca cgcgatcggc gggatggccg
     2041 cgttcatccc gaaccggcgc gacccggcgg tgaccgaggt ggcgctcgcc agggtgcgcg
     2101 aggacaagga gcgcgagtcc gccgacgggt tcgacgggac ctgggtcgcc cacccggacc
     2161 tcgtgccgat cgcgaccgag gtgttcgacc gggtgctcgg cgccaggccg caccagaagg
     2221 accggttgcg cgaggaggtt cgggtcggcg ccgcacagct cctcgacctt cgcgtccccg
     2281 gcggggccgt caccgaggcc ggagtccggg cggacgtccg ggtggccctg gcctatctcg
     2341 acagctggct gcgcgggaac ggggcggccg ccatcgacaa cctgatggag gacgcggcga
     2401 ccgccgagat cgcccggtcc cagctgtggt tctggcggtc tcggggcgtc cgtctcgacg
     2461 acgggcgggc gatggacgcg gagttgtacc ggcggatccg ggacgaggag ctggcgcgac
     2521 tgggcaggcc ggccaccggg cggctcgccg acgcggccgg tctcctcgac cggctcgtcc
     2581 tcgacgacga gttcgccgag ttcctgaccc tgcgtgccta ttccgtgctc gaatgagccc
     2641 tgaccccgcc gacgtcatgg acgccctgtc cgcctaccag gcggagctca accggcggat
     2701 ccccgggttc gatgggctcg tcgcgccgga tgtcgtgctg gcctcgatcg gattgccggt
     2761 ggcgcgggcc aactcggcca acgcggcgcg gttcacggcg acctcggcgg acgcacgaat
     2821 cggggacgtg atcgcctggt tcgaggcacg cggcctgccg ttcgcctggc acgccgggcc
     2881 ggccgatcgt cccgacgacc ttcggcggcg gctggtcgac cgcggcttcg tccttgggcc
     2941 ggacgagatg ccgggcatgg tggcgaggct cgacgcgctg ccccggctcg agatgccggc
     3001 cggcgccacg ctcgagcggg tcggcgacct gccgaccttc cgcgagtggc tcgacgtcgt
     3061 ggtggcgggc ttcggcatgc cggcgatgat gggcgaagcg ttcatgcgct tcggtggcct
     3121 cggcttcggc cccgggatgc ccgagctgct gctcgcccgg ctggacggcc gtcccgtggc
     3181 cgtcgccctt gcggcggtcg ccggcggcgg actcatcatc tcgaacgtca cgaccctgcc
     3241 cgacgctcgc gggcgaggtc tcggccgggc cgtcaccctg gccgccatgc atcacggagc
     3301 cgccgcgggc gtgccggttg ccgtgctcca ggccaccgag atgggtcgcg gcatctacca
     3361 acggctcggg ttcgaggact tcggctggta cgggacgctg acgtgggagg gccgctgagc
     3421 cctgccgtcg tccgcggcgg ccgccctgcg gcccgttgcc tgccggccgg cccgcccgcc
     3481 gacccgccga cccgcgacgc tcgctcagat gtccggcgac ccgcgctcga cgaactgacc
     3541 ggtgccacgc gtcccgacga agcgcccacc gcggacgacc ggccgccccc ggacgaacac
     3601 gtcgcgcacg gcgccgctga cggtcatgcc ctcgtacggc gtgtagtcgc tggactgctg
     3661 gaggtcgccg gccaggatcg tccggttggc cgacgggtcg aacaggacga gatcggcgtc
     3721 ccggccgacc tctagcgcac ccttgcgccc gaacccgaag cggcgcgccg gggtcgtggc
     3781 gaggaggtcc accatccgct cgacgctgat ccggccgcgg gcgacgccct cggagtagac
     3841 cagggtcagc agggtgccga tcccgggcgc gccgttgctg atctggttga acggaacacc
     3901 gttcgcggcc tcggccttct cgaccgcgag ccgatcggga acgtggtcgc tgacgaccat
     3961 gtcgatcgaa ccgtccgcga ggccccgcca cagggcgtcg cggtcggccg gcgtccggag
     4021 tggcggcgcg atcatgaacc gggcgcaacc gacgggatcg ggatcggcgt accgctcctc
     4081 ggtcaggacg aggtagtgcg ggcacgtctc gaccgacacc cggacgccgg tggcacggcc
     4141 gtcccgggtc tcgcgcaacg cgtcggcgga cgacaggtgg acgacgtgga ccggcgcgcc
     4201 ggactggcgg ccaaacgcca tggctcgagc cgtcgccacc gcctcgacgt agctcgggcg
     4261 tgtgccggcg tggtagcgcg gtagcacgtc accacgctga agcgccgtct cgatcgccgt
     4321 gtcgagcagc accgggtcct cgcaatggac ctcgagcatc gcgccgcgct cgcccatgac
     4381 ccgcatcgcg tcgtagaggc gtcggtcgtc cagccggaag tcgaagatca tgaacgcctt
     4441 gcaggtcggc accccggcat cgaccaccga gggcagctcg gcgaccggat cgtccatccg
     4501 cccgctcacg accaggctga cggcgtagtc gatcgcgcag tcgccagcgg tcacggcgcg
     4561 ccactcccgg agaccggcga ggagcgaccg ctcggcggcg ggcgacgagc cggtcccggg
     4621 gttgttgaag gcgaggaagc tcgtcgtccc gccgagggcg gccgcgaccg aatcctggaa
     4681 gaaccggtcg ggctggtcgt cgaccgcgac gcgggtatgg gtatgggcgt cgatgacccc
     4741 ggggaggacg agcagcccgg tcgcgtcgac gacgtcgtcc gccgtcgcgg cgggcccctg
     4801 gaggtccggc tcgatggccg cgatccggcc gccccggatg gccacgtcgg cccgtcgcga
     4861 gccggtcgcg gtcacgaccg tcccgccgcg gacgaccagg tcggtcatcg ccggctcagt
     4921 ccgcctcgac gatccggatc ggctgagcgc cttcccagag gcaccgacga ccgatctcgc
     4981 gcaggaggtc ctgccagcca tcgtccggca ccaccgtcgc gaagtggttt gccgcgagct
     5041 ggccgacctt cgacgccgtc gtacacgcgc cgtacgggaa gaagatctca cactcgctga
     5101 tcccgcccgg gtagatcgcc agctgtcccg gtgccgggtg cgaggtgtgg ttctcgtagt
     5161 cgagccccgg ccggaagtcg ccgaacggga tccaggtcga ctcgccgctc cagcggcagt
     5221 ggatcagctt cgactcgatc ggcagcatcc gccggatcgc ctcgacggtc cgaggtgccg
     5281 cctcggtctc ccaacgggcg ctacagtgga ggtcgccgac cgtgattcgc agggttccca
     5341 tccgcggagg atagcgtggc cagcggccgc accgagacag taccgacgat ctcgacgcac
     5401 gtgctcgaca ccgagctcgg gaagccggcg gtcggcgtcc atgtgacgct ctaccggctg
     5461 agcgacgacg gacggcccct ccggctgacc caggcgctga ccgacggtga cggccgcgtc
     5521 cgcgacctgc tcgagcggcc gctcgtcgtc ggcgactacc ggctcgaatt cggactggcc
     5581 ccgatcgcgg cggtcgacac ggcgcctgtc gagcccgccg tggagcgatt cttccgccgc
     5641 gtcgcgatcg acctccgtgt cgcggacgcg tcccggagct accacgtccc gctgctgctt
     5701 gcgccgtact cgatcaccac gtatcg
//
LOCUS       DATDDI010000512         1639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_614518, whole genome shotgun sequence.
ACCESSION   DATDDI010000512 DATDDI010000000
VERSION     DATDDI010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614518"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            21..>1639
                     /locus_tag="VIU37_07370"
     CDS             21..>1639
                     /locus_tag="VIU37_07370"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6013808.1"
                     /translation="MAFVRTDPTDDDAVAALVILDLRSGRLRVLPARDHGSVAEIAWS
                     PDGRRLAFSAEVDPPRFLVGDVPPIGGRRRPRNGGAASTSAPSPLARRITRADWRWDG
                     SGHVDRWSHLFVVDARAGARPRQVTSGDWGVADLCWAPDGRTVAFTADPGPDADTHPR
                     PGIRAVDVDGTEPPRPVLVPAGFANHAAFSPDGHWLAAIGVLDAEPLDDVSPGILLAP
                     ADGSAHPWALAPELDRPIGNWADTDLNGWMVSGRPGPCWLDSGTIVATVSDRGRSHPA
                     RFRLDPRTGAPIDPPVATSRDAPGPWSDATSHTLAVSRTGTIAVLGTLGTRAMELMTL
                     DADAAGPPRWATRSTLGSAWQRRFAQPEMRRLDASGSGGPIETWVASPPGAGDAALPA
                     VVDIHGGPLGAWAPAPHVEVALLVARGYRVILPNIRGSTSYGRDWIRPQLGDWGGVDA
                     ADVHAALDHVIGLGLADPDRLGALGLSYGGFMVNWLVGTTDRFRAAVSENGVTNQVSD
                     WANCDSGPEYARASRMGDPFSPGGIELLWRQS"
BASE COUNT          180 a          623 c          614 g          222 t
ORIGIN      
        1 tctcccccga cggccggcgg gtggcgttcg tccggaccga cccgaccgac gacgacgcgg
       61 tggccgcgct ggtgatcctc gacctgcgga gcggccggct gcgcgtcctc ccggcgcgcg
      121 atcacgggtc ggtggccgag atcgcctggt cgccggacgg ccggcggctg gcgttcagcg
      181 cagaggtcga tcctccgcgc ttcctcgtcg gcgacgtccc gccgatcggc ggccgccgac
      241 ggccccggaa tgggggtgcg gcgtccacga gtgcgccctc gccgctcgcc cgccggatca
      301 cgcgcgccga ctggcgctgg gacggatccg gccacgtcga ccggtggtcg cacctgttcg
      361 tggtggacgc gcgcgccggt gcccggcctc gccaagtcac gagcggcgac tggggtgtgg
      421 cagatctctg ctgggccccc gacggacgaa cggtcgcgtt caccgccgac cccggcccgg
      481 acgctgacac gcacccgcgg cccgggatcc gggcggtcga cgtggatggg accgagccgc
      541 cgcggccggt gctcgtcccc gccgggttcg ccaaccatgc cgcgttctcg cccgacggtc
      601 actggctggc ggcgatcggc gtgctcgacg ccgagccgct cgacgacgtc agccccggga
      661 tcctcctcgc cccggccgac gggtccgccc atccgtgggc gctcgccccc gagctggacc
      721 ggccgatcgg caactgggcg gacaccgatc tcaacggctg gatggtgtcc ggccggcccg
      781 ggccgtgctg gctggactcg ggcacgatcg tggccacggt cagcgatcgc ggccgctcgc
      841 atccggcccg tttccgtctc gacccccgga cgggggcgcc catcgatccg ccggtcgcga
      901 cgtcgcgcga cgcgcccggg ccatggtccg atgcgaccag ccacacgctg gcggtctccc
      961 ggaccgggac gatcgcggtg ctggggacgc tcgggacccg ggcgatggag ctgatgacgc
     1021 tcgatgccga cgcggcgggc ccgccgcgct gggccacgcg ctcgacgctc ggctcggcgt
     1081 ggcagcggcg cttcgcgcag cccgagatgc gccggctcga cgcgtccggc agcggtggcc
     1141 cgatcgagac ctgggtggcc tcgccgcccg gcgctggcga cgcggccctg ccggccgtcg
     1201 tggacatcca tggcgggccg ctcggcgcct gggcgccggc gccgcacgtc gaggttgcgc
     1261 tgctcgtcgc ccgaggctac cgggtgatcc tcccgaacat ccgcggctcc acctcctacg
     1321 gccgcgactg gatccgcccg cagctcggtg actggggcgg cgtcgatgcc gccgatgtcc
     1381 acgcggcgct cgaccacgtc atcgggctcg ggctggccga tccggaccgg ctcggcgcgc
     1441 tcggcctgag ctacggcggg ttcatggtga actggctcgt cgggacgacc gatcgattcc
     1501 gcgcggccgt ctcggagaac ggggtcacca accaggtctc ggactgggcg aattgcgact
     1561 ccggcccgga atatgcccgg gcgagccgga tgggcgatcc gttcagcccc ggagggatcg
     1621 agctgctgtg gcgccagtc
//
LOCUS       DATDDI010000513         1836 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_510690, whole genome shotgun sequence.
ACCESSION   DATDDI010000513 DATDDI010000000
VERSION     DATDDI010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510690"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1484)
                     /locus_tag="VIU37_07375"
     CDS             complement(<1..1484)
                     /locus_tag="VIU37_07375"
                     /inference="COORDINATES: protein motif:HMM:NF018012.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0015948 - methanogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine methyltransferase family protein"
                     /protein_id="HEY6013809.1"
                     /translation="MRPSLQILSEELTARIVDEAKRVLAEVGMEIRGPEMRRRLLEHG
                     LPLDHSGQRVLFPRDVVDRAIADAPSSFILYDRAGEPHADIGGDRVHFVPGSSGLKVL
                     DHRTGETRLADSTDFVEYVRLGDGLANIPYLATAFSTNADIEAQVSDAWRLYMTLTNS
                     NKPVVSGAFTEHGVPRMVEMMQLFRHDRADLIARPMSIFTITATGNFRYSEDSCQNLI
                     DCVEAGVAVEIVPVTLMGLIAPVTTVGATVFHTVDVLAGITMAQVIRPGAPVLFGGAP
                     ATFHMKIASSPMSAIEALQLDAAYVAVGKSLGLPTQSYMALSDGPILDAQAGAETFGS
                     ALIAALAGVNSVSGPGMLDFLLVFSLPKLVFDDEMCGQALRFVREVQPLDDLPVDSLI
                     QHLMADQHLIMAEHTTRHWPEELYLPSSIVDRDNREAWTKQGAKDAYQRAIDEVDRRL
                     AAYHQLETDPAVDAELRRIIRSGLVDQTELPEIPVAPEPVVASGP"
BASE COUNT          280 a          612 c          664 g          280 t
ORIGIN      
        1 ggcccgctcg cgacgacggg ttcgggcgcg accgggatct ccggcagctc ggtctggtcg
       61 accagcccgg accggatgat ccgtcgcagc tcggcgtcga cggccggatc ggtctcgagc
      121 tggtgatacg cggccaggcg ccggtcgacc tcgtcgatcg cgcgctggta ggcgtccttg
      181 gcaccctgct tcgtccaagc ctcgcggttg tcgcgatcca cgatcgagct cggcaggtag
      241 agctcctcgg gccagtgtcg ggtggtgtgc tcggccatga tcaggtgctg gtcggccatc
      301 aggtgctgga tcagcgaatc gaccggcagg tcgtcgagcg gctggacctc gcggacgaag
      361 cggagcgcct ggccgcacat ctcgtcgtcg aacacgagct tgggcaggct gaacaccagc
      421 aggaagtcga gcatgcccgg gccggacacc gaattgaccc cggcgagcgc ggcgatcagc
      481 gcgctcccga acgtctcggc gcccgcctgc gcgtcgagga tcggcccgtc ggacagcgcc
      541 atgtacgact gggtcggcag gcccagcgac ttgccgacgg caacatacgc ggcatcgagc
      601 tggagggcct cgatcgccga catcggcgag ctggcgatct tcatgtggaa cgtcgccggc
      661 gccccgccga acaggaccgg cgcccccggc cggatgacct gggccatggt gatcccggcc
      721 agcacgtcaa cggtgtggaa aaccgtggcc ccgaccgtgg tgaccggcgc gatcaggccc
      781 atcagcgtga ccggcacgat ctcgacggcc acgcccgcct ccacgcaatc gatcaggttc
      841 tggcaggagt cctcgctgta ccggaagttc ccggtcgcgg tgatcgtgaa gatcgacatc
      901 gggcgggcga tcaggtcggc ccggtcgtgc cggaagagct gcatcatctc gaccatccgc
      961 ggcacgccgt gctcggtgaa cgcgccggac acgaccggct tgttcgagtt ggtcagggtc
     1021 atgtacagcc gccaggcgtc ggagacctgg gcctcgatgt cggcgttcgt cgagaacgcc
     1081 gtggcgaggt acgggatgtt ggccagtccg tcgccgagcc ggacgtactc gacgaagtcg
     1141 gtggagtcgg ccaggcgggt ctctccggtc cggtggtcga gcaccttgag gccggacgag
     1201 ccgggtacga aatggaccct gtcgccgccg atgtcggcgt gtggctcgcc ggcgcggtcg
     1261 tagaggatga acgagctcgg ggcgtccgcg atcgcccggt ccacgacgtc gcgcgggaag
     1321 agcacgcgct ggccggagtg gtcgaggggc aggccgtgct cgaggaggcg gcggcgcatc
     1381 tcgggcccgc ggatctccat cccgacctcg gcgaggaccc gcttggcctc atcgacgatg
     1441 cgggcggtga gctcctcgct caggatctgc aggctgggac gcatccgttc tcctcggggc
     1501 cgaccgtcgg tcgatggtcc ggcatgggat tcccaatgcc cttcgcgttc cgcctgatgc
     1561 gccccggcgt tccgtcgggt gggagcccgg gtcgcgtgcg caggccccag aaaagggtga
     1621 cgcccgaagg cggatgtctc cgccatcggg catcaggccg aatcccccgg aatgaggcca
     1681 cggcgaaccg taccaaagtc ccagccacgg tgcaagacct tcggcgacgg cacgtggtgc
     1741 cgggcggcac cggcagggtc gtcagtccag cgtcacgcgc tcgtgccagt gcgggacctg
     1801 ggtcgcgaag cccagatcac gcaccttggg ctccat
//
LOCUS       DATDDI010000514         3567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_52909, whole genome shotgun sequence.
ACCESSION   DATDDI010000514 DATDDI010000000
VERSION     DATDDI010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52909"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2364)
                     /locus_tag="VIU37_07380"
     CDS             complement(<1..2364)
                     /locus_tag="VIU37_07380"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6013810.1"
                     /translation="MKRAGSMLCPVIVGRDDLLELVDHLVAETARGRGHTMFLAGSAG
                     LGKTRLIRATVNKAEAAGLRVEGGMVSPQDHLVPLASIKDLIAGLRGNPAWGTLWEDL
                     RTIDGRHDGDALGARRLIVRGVADRILEAIDRPTFLVFDDLHWTDEMSLEVIGELARH
                     VPEVPLLLIAGYRPDEFPADGLHREWRARVLSQRLAEEVRLQPLTLDQTAMATTLILG
                     GELPAPRDVVEAVHERTNGIPLHIEELLGALDGNGRLDGQAIRQAHVPDTIADAVLAR
                     MDRLSSDAQLVARAGAVVGRCFGPDVISGMVGRPLPELEPSIQELVDAAILRPFNYVD
                     EGYYDFRHQLLRDAIYGALPPSQLRRFHAQAAEFGMNLQNASVIHASRHYERAGLRPQ
                     AFRASLAGASEAGRVSARHEAFELYQRAIANMPADLSIDEQADLYARYGEAAAAIEHN
                     EEATDAGRRARELYLRAGKPLLAAEMLVLMSVLPGRDGSPTSHVAGLTEQAIAEIAEL
                     PPSDERDRAEAYFRSVRANDRFLQSRFDAARKDLDVSTEIARRFGDRETELENDLTRA
                     RIDIADGRYETGIRDGMRAARAARDAGYESVGVTGYRNLAIMAARVMDRRATELALRE
                     GLQYADAIEQSHCRQMMATTTALLDWGAGEWTAADERARHELVDRGCARGTIGSLDVV
                     GLVALGRGRLEEATRWLEESLAVGRGIGEVQFILTPLWALAETALVAGDSERAAARCH
                     EALGIATETGERALLIPFVVTGARALIAARRPADAEQWLARVRSHLAG"
     gene            2462..3538
                     /locus_tag="VIU37_07385"
     CDS             2462..3538
                     /locus_tag="VIU37_07385"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF006847.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004000 - adenosine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009168 - purine ribonucleoside
                     monophosphate biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEY6013811.1"
                     /translation="MLTLDVIRSCPKALLHDHLDGGLRPATVIDLAAEYGYDGLPTTD
                     VDELAAWFRRGADRKSLELYLETFTHTVGVLQERDAIIRVAAECAEDLAADGVVYAEV
                     RYAPELSTERGLTLDEVVDANLEGFKLGAARAEEAGRPIVMKMLVTAMRQAARSVEVA
                     ECAVRWRDAGVVGFDVAGPEKGYPPTRYLDAFEYIRRENFHITIHAGESFGLPSIWEA
                     LQFCGAERLGHGVRLVDDIRVLDDGSVELGRLAAFVRDRRVPLEMCPTSNVHTGAAAS
                     IREHPFDLLRRLRFRVTVNTDNRLMSGTSMTQEMIALVEAFGLGLADLQWFTLNAMKS
                     AFLHFDERLRIINDVIKPGYAALA"
BASE COUNT          507 a         1259 c         1259 g          542 t
ORIGIN      
        1 gcccgcgagg tggctgcgca cccgggcgag ccactgctcg gcgtcggccg gccggcgcgc
       61 cgcgatgagc gcccgggccc ccgtcacgac gaacgggatg aggagcgctc gctcgccggt
      121 ctccgtcgcg atccccaggg cctcgtgaca acgcgccgcg gcccgctcgg agtcgccggc
      181 cacgagtgcc gtttcggcca gcgcccagag cggcgtgagg atgaactgga cctcgccgat
      241 cccgcgcccc accgccagcg attcctcgag ccagcgtgtg gcctcctcga gccggccgcg
      301 tccgagcgcg accaggccca cgacgtcgag cgagccgatc gtgcccctcg cgcagccacg
      361 atcgacgagc tcgtggcgtg cccgctcgtc ggcggccgtc cactcgccgg cgccccagtc
      421 gagcagtgcg gtcgtggtcg ccatcatctg ccggcaatgg gactgctcga tcgcgtcggc
      481 gtactggagc ccttcgcgca gggcgagctc ggtcgcccgg cgatccatca cccgggccgc
      541 catgatcgcc aggttccggt agccggtgac gccgacgctc tcgtagccgg cgtcgcgggc
      601 cgcccgcgcg gcccgcatcc cgtcccggat gccggtctcg tagcgaccgt cggcgatgtc
      661 gatccgggct cgggtcaggt cgttctcgag ctcggtctcg cgatcgccga atcgtcgggc
      721 gatttcggtt gacacgtcga gatctttgcg ggccgcgtcg aaccgcgact gcaggaaccg
      781 gtcgttcgcg cggacactcc ggaaatacgc ctcggcccgg tcgcgctcat cgctcggggg
      841 cagctcggcg atctccgcga tcgcctgctc cgtcaggccg gcgacgtggc tggtcgggga
      901 gccgtcgcgc ccgggcagga ccgacatgag cacgagcatc tcggcggcca ggagcggttt
      961 gcccgcccgg agatacagct cgcgggcgcg tcggcccgcg tcggtggctt cctcgttgtg
     1021 ctcgatcgcg gcagccgcct cgccgtatcg ggcgtacagg tcggcctgct cgtcgatcga
     1081 caggtccgcc ggcatgttcg cgatcgcccg ctggtacagc tcgaatgcct cgtgacgggc
     1141 cgacacgcgc cctgcctcgc tcgctcccgc gagcgacgcg cggaacgcct gtggacggag
     1201 gccggcccgc tcatagtggc gcgaggcgtg gatgacgctc gcgttctgca ggttcatccc
     1261 gaactcggct gcctgggcgt ggaaccgtcg aagctgggac ggcggcaggg caccgtagat
     1321 cgcgtcgcgc aggagctggt ggcggaagtc gtagtagccc tcgtcgacat agttgaacgg
     1381 ccgcaggatg gcggcgtcga ccagctcctg gatcgacggc tccagctccg ggaggggtcg
     1441 cccgaccatc cccgagatca cgtcgggacc gaagcagcgc ccgacgaccg cacccgctcg
     1501 ggcgacgagc tgggcatcgg acgacagccg atccatccgg gcgaggaccg cgtcggcgat
     1561 cgtgtcgggg acgtgcgcct ggcggatcgc ctggccatcg agccggccgt tgccgtcgag
     1621 cgcgccgagg agctcctcga tgtggagcgg gatcccattc gttcgctcat ggaccgcctc
     1681 gacgacatcg cgcggggcgg gcagctcgcc gcccaggatg agggtggtcg ccatcgcggt
     1741 ctggtcgagg gtcagcggct ggagccggac ctcctcggcc agccgttggc tgagcacgcg
     1801 ggcgcgccac tcgcggtgga gcccatccgc cgggaactcg tccggccgat atccggcgat
     1861 gaggaggagc gggacctcag gaacgtgcct ggcaagctcg ccgatcacct ccaggctcat
     1921 ctcgtcggtc cagtggagat cgtcgaagac gaggaacgtc ggccggtcga tcgcctcgag
     1981 gatccggtcg gcgacgccgc gcacgatcag ccggcgcgcg ccgagcgcgt cgccgtcatg
     2041 ccgcccgtcg atggtgcgca ggtcctccca gagcgtgccc cacgccgggt tgccccggag
     2101 gccggcgatc aggtccttga tcgaggcgag cgggacgagg tgatcctgcg gggacaccat
     2161 cccgccttcg acccgcaggc cggctgcctc ggccttgttg acggtcgcac ggatcaggcg
     2221 ggtcttgccg agccccgcgg agccggccag gaacatcgtg tgaccgcggc ccctggccgt
     2281 ttcggccacg aggtggtcga ccagctcgag gagatcgtcc cgaccgacga tcaccgggca
     2341 gagcatcgaa ccggcgcgtt tcattgacgg agtctacggg gcgtgcacaa gggggcatcg
     2401 gtcattcgac cgatgggcga ttcacgctgg aatcggctgc gcgaaggact accatcgtcc
     2461 cgtgctgacg ctcgacgtga tccgctcgtg tccgaaggcc ctcctgcacg atcacctcga
     2521 cggtgggctc aggccggcga ccgtcatcga cctcgccgcc gagtatgggt acgacgggct
     2581 gccgaccacg gacgtggacg agctggccgc atggttccgt cggggtgccg accggaagag
     2641 cctcgagctc tatctcgaga cgttcaccca caccgtcggc gtcctccagg agcgcgacgc
     2701 gatcatccgc gtggccgccg agtgcgccga ggatctcgcg gccgacgggg tggtctacgc
     2761 cgaggttcgc tacgcacccg aactgtctac cgaacgaggg ctgacgctcg acgaggtcgt
     2821 cgacgccaac ctcgaggggt tcaagctcgg cgcggccagg gcggaggagg ccggccggcc
     2881 gatcgtcatg aagatgctcg tgacggccat gcgccaggcg gcccgttcgg tcgaagtcgc
     2941 cgaatgtgca gttcgctggc gcgacgcggg ggtggtcggg ttcgacgtcg ccgggccgga
     3001 gaagggctac ccgccgacgc gctacctcga cgcgttcgag tacatccgcc gcgagaactt
     3061 ccacatcacg atccacgccg gcgaatcgtt cggcctgcca tccatctggg aggcgcttca
     3121 gttctgcggc gccgagcgcc tgggccacgg cgtccggctc gtcgacgaca tccgtgtcct
     3181 cgacgacggt tctgtggagc tcggccggct tgctgcgttc gtccgggatc gccgggtgcc
     3241 gctcgagatg tgccccacct cgaacgtcca cacgggcgcc gcggcatcca tccgcgagca
     3301 cccgttcgac ctgctgcgtc ggctccggtt ccgggtcacg gtcaacaccg acaaccggct
     3361 gatgagcggc acgtcgatga cgcaggagat gatcgcgctg gtcgaggcgt tcggtctcgg
     3421 tctcgccgac ctgcagtggt tcaccctcaa cgcgatgaag tccgccttcc tgcacttcga
     3481 cgagcggctg cggatcatca acgacgtgat caagccgggg tacgccgcgc tcgcctgagc
     3541 cgtcgcaccg cccccatgta aagcgac
//
LOCUS       DATDDI010000515         1574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_281806, whole genome shotgun sequence.
ACCESSION   DATDDI010000515 DATDDI010000000
VERSION     DATDDI010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281806"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(397..537)
                     /locus_tag="VIU37_07390"
     CDS             complement(397..537)
                     /locus_tag="VIU37_07390"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HEY6013812.1"
                     /translation="MAMAYCVKDKMKVEVQNPKQITMKNGKPALSGTCPKCGTKVFKI
                     GG"
     gene            complement(599..1438)
                     /locus_tag="VIU37_07395"
     CDS             complement(599..1438)
                     /locus_tag="VIU37_07395"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEY6013813.1"
                     /translation="MPNADHRVALPAGERQYHIDLGPGELAEYILLPGDPDRTARIAT
                     RLDSIELERQHREFATVTGSYRGLRVSVVSTGIGTDNVEIVVAEALAITERPTFIRVG
                     SSGALQPEMALGDLAITTGAVRLETTTSWFVHDGYPAVADYEAVVALIEAAERVGVPY
                     HLGITATAPGFYGAQGRPIPHLPIRYPDLAEDMARQRVMNFEMEASALLVLAGLAGCR
                     AGVVCAVFAQRTTGDFVTGAAKDAAERNGVVTGLESLRILADMDRRKAAAATAHWRPS
                     LGI"
BASE COUNT          228 a          529 c          580 g          237 t
ORIGIN      
        1 gatcgaccgg gccgggagac gagatcccga tcccaacgat cgagtcggcg acgtccgcgg
       61 ggaccttggc gcgggactcg gcgaccgcgt cgcgacaggc ccggacgacg gccgccgggc
      121 cgtcctcggt cggggtctcc atgtcgaccc gggcaagcct cgacccatcg gactgcacga
      181 cggcggcgcg gatgcgcgtg ccgccgaggt cgagggcgag gaccggcgga cgtgacaggg
      241 gatgacctcg ggctcggcag agtgggcagg acggcccaac ggtggttgtg cccgaattct
      301 agcaaagggg tccggccgtc cccgaagggc cccagagatg ggaagacccc tgccggtcat
      361 ccgacagggg tcgtgtcccg cgctcaggaa cgaaggtcag ccgccgatct tgaagacctt
      421 ggtaccgcac ttcgggcagg tgcccgagag agccggcttg ccgttcttca tcgtgatctg
      481 cttcgggttc tggacttcga ccttcatctt gtccttcacg cagtaggcca tcgccatggg
      541 ttcgggtcct cctcgagctc catgcgcccc gagtccgcgc ccggggtcgc gctgcgcgct
      601 agatccccaa cgacggtcgc cagtgagccg tcgctgctgc cgccttgcgg cggtccatgt
      661 cggcgaggat ccggaggctt tccagccccg tcaccacgcc gttccgttct gccgcgtcct
      721 tcgcggcccc ggtgacgaag tctcccgtcg tccgctgcgc gaagaccgca cagacgacgc
      781 cggcacgaca cccggccagg cccgcaagca cgagcagcgc cgaggcctcc atctcgaagt
      841 tcatgacgcg ttggcgcgcc atatcctcgg cgaggtcagg gtaccggatg gggagatgcg
      901 ggatcgggcg gccttgcgct ccgtagaagc cgggcgcggt cgcggtgatc cccaggtgat
      961 acggcacgcc gacgcgctcg gccgcctcga tgagggcgac gacggcctcg tagtcggcca
     1021 ccgccgggta gccgtcgtgg acgaaccagc tggtcgtcgt ctcgaggcgc acggcgccgg
     1081 tggtgatggc gagatcgccg agggccatct ccggctggag ggccccggac gagccgaccc
     1141 ggatgaacgt ggggcgctcg gtgatcgcga gcgcctcggc aacgacgatc tcgacgttgt
     1201 cggtcccgat gccggtcgag acgaccgaga cccggaggcc cctgtaggag ccggtgacgg
     1261 tggcgaactc gcggtgctgg cgctcgagct cgatcgagtc gaggcgggtc gcgatcctgg
     1321 cggtgcgatc ggggtcgccg gggaggagga tgtactcggc cagctcgccg gggccgagat
     1381 cgatgtggta ctgccgctcc cctgcgggaa gcgcgacgcg gtggtccgcg ttcggcaaga
     1441 tgccgttctc ctccctcgtc gtccgcgacc gcggaactgg ccgcagcgta gacgtggctt
     1501 cgaacgagcg tcaagcgtgg ccacgttcag ccggaccggt cggcgcgagc gtggcgacgc
     1561 tcgcggggct gcgg
//
LOCUS       DATDDI010000516         1764 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_177835, whole genome shotgun sequence.
ACCESSION   DATDDI010000516 DATDDI010000000
VERSION     DATDDI010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177835"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..512
                     /locus_tag="VIU37_07400"
     CDS             228..512
                     /locus_tag="VIU37_07400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013814.1"
                     /translation="MLMPFDHPDGGAALDPDILLAVSAMVLALAIPVVAIVAVLRVSR
                     DKLLGRRHGRDRFLGAVSRAGVHASHLQADTPDVDDIAVPLPPRPGDRRH"
     gene            complement(527..1090)
                     /locus_tag="VIU37_07405"
     CDS             complement(527..1090)
                     /locus_tag="VIU37_07405"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY6013815.1"
                     /translation="MRSVTYSMGVSLDGYIVGPDGGFDWTAPDKEVFRFWIDEIREVG
                     VHLMGRRLYETMLYWETAEQEQSLDDAEREWAALWKPLPKVVFSTTLSAVQGNARLAS
                     GGVAEEIERVRAEPGEGEIAIGGATLAAEVAALDLIDEYRTMVYPVLVGGGIPFFPRR
                     ERRVDLELVDTRTFSSGVVYLRHRVAR"
     gene            1219..>1764
                     /locus_tag="VIU37_07410"
     CDS             1219..>1764
                     /locus_tag="VIU37_07410"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6013816.1"
                     /translation="MGIGRRIWIAAAVAAAPVGLAYRFALAYRVRAGYPHRYPPRITP
                     ADLGLPFESLSVVSDGLSLPAWFIPARDGAPGPGVVLVHGWESARDRTLPMAVFLHAA
                     GFHCLTFDVRGHGANPPETLPLSAGEFGVDAAAAFRVLMARPEITVGAISGHSMGAIG
                     AILAGAADPRAAAIVATSGPSD"
BASE COUNT          220 a          654 c          611 g          279 t
ORIGIN      
        1 cgttgatctc ggccatccgc gtggtcgcgg cccgcgacgc cgcggggtcg tcgccggtca
       61 ggtccgggtg gttcgtccgg gcgaggcgcc gccaggcggc cttgatctgg gccggcgagg
      121 cgccgtcggt gacgccgagg acgtctcgag gatcgcgttt ggccatcacg ttgagtgtag
      181 ggcaccggcg gcggcattcg gcccttgaca cgatcggggc ccggcacatg ctgatgccgt
      241 tcgatcatcc cgatgggggc gctgccttgg accccgacat cctgctggcc gtatccgcga
      301 tggtcctcgc tctggcgatc ccggtcgtcg cgatcgtggc ggtcctccgg gtcagccgcg
      361 acaagctcct ggggcgccgc catggccgcg atcggttcct cggggcggtc tcgagggcgg
      421 gcgtgcacgc ctcgcacctc caggcggaca cgccggacgt cgacgacatc gcggtcccgc
      481 tcccgccccg tccgggcgat cgtcgtcact gaggcggacg agccggctat ctcgccacgc
      541 ggtggcggag gtagacgaca cccgagctga aggtgcgggt gtcgacgagc tcgaggtcca
      601 cccggcgctc gcgccggggg aagaacggga tgccaccgcc gaccaggacc gggtagacca
      661 tggtccggta ttcgtcgatc agatccaacg cggccacctc ggcggcgagc gtcgcgccgc
      721 cgatcgcgat ttcgccctcg cctggctcgg ctcgcacccg ctcgatctcc tccgccacgc
      781 cgcccgacgc caggcgcgcg ttgccctgca ccgcggacag cgtggtggag aacaccacct
      841 tcgggagcgg cttccagagc gcggcccact cgcgctcggc gtcgtcgagc gattgctcct
      901 gttcggcggt ctcccagtac agcatcgtct cgtacagccg acgtcccatc aggtggacgc
      961 cgacctcgcg aatctcgtcg atccagaacc gaaagacctc cttgtcgggc gccgtccagt
     1021 cgaaaccgcc gtccggcccg acgatgtagc cgtcgagcga gacgcccatc gaataggtga
     1081 cgctgcgcat cggaagtcct cctcggtgcg gggttcgacc atacgacagc cggacgcccc
     1141 aggactcatc gccgcatgcc ggatctcctg gggccgccgg cacttgacag gtcgcacccg
     1201 gtgccgtccc ctaccgatat ggggatcggg cgtcggatct ggatcgcggc agccgttgcc
     1261 gccgcgccgg tcgggctcgc ctatcgcttc gccctcgcct atcgcgtacg ggccggctac
     1321 ccgcatcggt acccgccgcg gatcacgccg gccgatctcg ggctgccgtt cgagtcgctc
     1381 agcgtggtct cggacggcct gtcgttgccg gcctggttca tcccggcccg ggacggggcg
     1441 ccgggcccgg gtgtcgtgct cgtccacggc tgggaatcgg cgcgcgaccg gaccctcccg
     1501 atggcggtct tcctgcacgc cgccggcttc cactgcctga cgttcgacgt tcgcggccac
     1561 ggggcgaacc cgcccgagac gctaccgctg agcgccggcg agttcggcgt cgatgccgcg
     1621 gccgcgttcc gcgtcctgat ggcgcgcccc gagatcaccg tcggcgcgat ctcgggccac
     1681 tcgatgggcg ccatcggtgc gatcctcgcc ggtgccgccg acccgcgggc ggccgcgatc
     1741 gtggcgacat ccggcccatc cgac
//
LOCUS       DATDDI010000517         2880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_677119, whole genome shotgun sequence.
ACCESSION   DATDDI010000517 DATDDI010000000
VERSION     DATDDI010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677119"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..1090)
                     /locus_tag="VIU37_07415"
     CDS             complement(95..1090)
                     /locus_tag="VIU37_07415"
                     /inference="COORDINATES: protein motif:HMM:TIGR02822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEY6013817.1"
                     /translation="MRALQVRRPRPASDDPLEPAELPDPRPGPGELLVRVSACAVCRT
                     DLQIATGDLAPHRSPVVPGHQAVGEVVGLGPGVGDWAIGDRAGSTWLAGFDGTCAFCA
                     TGRENLCRAAQFTGWDTDGGFAELTTVRADVAVRIPAGLDAVAAAPLLCGGVIGYRAL
                     RLSGIVAGGRLGLYGFGASARQAIQVARHWGCEVHVASRSRRDLESATAFGASSVGGY
                     DDPPPAPLDAAITFAPAGSVVISALRALERGGTVVVNAIHLDGIPAFSYDDLWWERSI
                     RSVANVTRADARAFLALAGEIPIRSEVEVHDLADANEALRRIESGEVRGAAVLRR"
     gene            complement(1090..2361)
                     /locus_tag="VIU37_07420"
     CDS             complement(1090..2361)
                     /locus_tag="VIU37_07420"
                     /inference="COORDINATES: protein motif:HMM:NF014594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA hydrolase/transferase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6013818.1"
                     /translation="MRIVSPAEAVSGIQSGNQVYVQCAAATPSVLLDALVARAPELRD
                     VGMIHLHIEGPGPHLRPEMAPHFRHRALFVGPNAREAVNDGRADFVPVFLSEVPHLFE
                     RGAIQLDAVLVNATPPDAHGFCSLGTSVEAMHAAIRSARTVIVQLNRAMPRTLGESFI
                     HVDDIDLATEVDVPPYEYTSGTIGDVERRIGEYVAELIPDGATLQLGIGAIPSATALA
                     LIHHKDLGIHTEMFTDAVVDLVEAGVVTGARKQRNRGKIVTAFMMGARRLYDFVNDNP
                     MVEMRSVDYTNDTHVIRSFNTMTAINSAIEVDLTGQVVADSIGCRIYSGVGGQMDFVR
                     GAALAPEGRAIIALPSTAANGTISRITPSLACGAGVVTTRAHVRTIVTEWGVAELFGR
                     SLRERAAALIAIAHPDHRDLLRSEAHRLGFG"
     gene            complement(2450..2779)
                     /locus_tag="VIU37_07425"
     CDS             complement(2450..2779)
                     /locus_tag="VIU37_07425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013819.1"
                     /translation="METRRLTADGRPSHKVIVWIDHDQAFIVGQGPDGRETVELVDRA
                     ADETEADFEARTVGEVVDDDQVVVSGPAYARTGFERAYVAVTHRPDRLVDVEPDTVPT
                     RKVRQPA"
BASE COUNT          394 a         1021 c         1064 g          401 t
ORIGIN      
        1 gcaagggcca ggtcgccgcg ccggaccgga atgcctgggg cggtggcggg tcacgcgacc
       61 ggcgggcgcg cgatcacggc gcggaggacc ccgatcaacg ccggagcacg gctgctcccc
      121 gcacctcgcc cgattcgatc cggcggaggg cttcgttcgc gtccgccagg tcgtggacct
      181 cgacctcgga ccggatcggg atctcgccgg ccagggccag gaacgcccgg gcgtcggccc
      241 gggtcacgtt cgccacggac cggatcgatc gctcccacca caggtcgtcg taggagaacg
      301 ccgggatgcc gtcgaggtgg atggcgttga cgacgacggt cccgcctcgc tcgagcgccc
      361 gcagcgccga gatcaccacc gagccggccg gcgcgaacgt gatcgcggcg tcgagcggcg
      421 ccggcggtgg atcgtcgtag ccgccgaccg acgacgcccc gaacgcggtg gcggactcga
      481 ggtcgcgccg gctgcgggac gcgacgtgaa cctcgcagcc ccagtgccgg gcgacctgga
      541 tggcctgccg cgcggaggcg ccgaacccat acagcccgag ccgcccgccg gccacgatcc
      601 cgctcagccg gagtgcgcgg tagccgatca ccccgccgca cagcaacggt gccgcggcga
      661 cggcgtcgag ccccgccggg atccgcaccg cgacatcggc tcggacggtg gtcagctccg
      721 cgaacccgcc gtcggtgtcc cagccggtga attgggccgc gcggcacagg ttctcgcggc
      781 ccgtcgcgca gaaggcgcac gtgccgtcga agccggccag ccaggtgctg cccgcccggt
      841 ccccgatcgc ccagtccccg acgccggggc ccaggccgac gacctccccg accgcctggt
      901 gcccgggcac gaccgggctc cggtgcgggg cgaggtcgcc ggtggcgatc tggagatccg
      961 tccggcagac ggcgcaggcg gatacgcgga cgaggagctc gccgggcccg ggccggggat
     1021 ccgggagctc cgccggctcc agcggatcgt cggacgccgg acggggccgg cgaacctgga
     1081 gggcccgcat cagccgaacc cgagtcggtg cgcctccgag cgcagcaggt cgcgatggtc
     1141 gggatgggcg atcgcgatga gcgccgccgc tcgctcgcgg agactccggc cgaacagctc
     1201 ggcgaccccc cattcggtga cgatggtccg gacgtgggca cgggtcgtga cgacgccggc
     1261 gccgcaggcc agcgacggcg tgatcctcga gatcgtgccg ttggcggccg tcgacggcag
     1321 ggcgatgatc gcccgtccct ccggcgccag cgcggcgccg cggacgaagt ccatctggcc
     1381 gccgacgccg ctgtagatcc ggcaaccgat cgagtcggcc acgacctggc cggtcaggtc
     1441 gacctcgatc gccgagttga tcgcggtcat cgtgttgaac gagcggatca cgtgggtgtc
     1501 gttggtgtag tcgaccgagc gcatctcgac catcgggttg tcgttcacga agtcgtacag
     1561 ccgtcgcgcg cccatcatga aggcggtcac gatcttgccc cggttccgct gcttgcgggc
     1621 gccggtgacc acgccggcct cgaccaggtc gacgaccgcg tcggtgaaca tctcggtgtg
     1681 gatcccgagg tccttgtggt ggatcagggc cagcgccgtg gccgacggga tcgcgccgat
     1741 cccgagctgg agggtcgcgc cgtcggggat cagctcggcc acgtactcgc cgatccggcg
     1801 ttccacgtcg ccgatcgtcc cgctcgtgta ctcgtagggc gggacgtcga cctcggtcgc
     1861 gaggtcgatg tcgtcgacgt gaatgaagct ctcgccgagg gtccggggca tcgcccgatt
     1921 gagctggacg atgacggtcc tcgcgctgcg gatcgccgcg tgcatcgcct ccaccgacgt
     1981 cccgagcgag cagaacccgt gggcgtccgg cggcgtcgcg ttgaccagga cggcgtcgag
     2041 ctggatcgcg ccccgctcga acaggtgcgg gacctccgag aggaagacgg gcacgaagtc
     2101 ggctcgtccg tcgttgaccg cctcccgggc gttcggtccg acgaacagcg cgcggtgccg
     2161 gaagtgggga gccatctcgg gccgcaggtg cggtccggga ccctcgatgt ggaggtggat
     2221 catccccacg tcgcgcagct cgggcgcccg ggcgacgagc gcgtcgagca gcacggacgg
     2281 ggtcgccgcg gcgcactgga cgtagacctg gttgccgctc tggatgccgg agacggcctc
     2341 ggccggggag acgatgcgca tcagtcctcg ctcttcgtct gctctaccgg tcggcggccg
     2401 aggccacgcc ggtcgaggcg ggcggtcgct ccggcgagat ggccgccggt cacgccggct
     2461 ggcgtacctt cctggtgggc accgtgtccg gctcgacgtc gacgaggcga tccggtcgat
     2521 gggtcaccgc gacataggcc cgctcgaagc cggtccgagc ataggcgggt ccggagacga
     2581 cgacctggtc gtcgtcgacg acctcgccga cggtgcgggc ctcgaagtcg gcctcggtct
     2641 cgtccgctgc ccgatcgacg agctcgacgg tctcgcggcc atccggtccc tgcccgacga
     2701 tgaaggcctg atcgtgatcg atccagacga tgaccttgtg cgagggtcgt ccgtccgccg
     2761 tcagtcttcg tgtctccatc gggccacctc cagttccatc ctgaggatgc tggccgccgt
     2821 cgccggccgt cagtgtcgaa tggccgaatg tcagggtcca ctcggcccgg ccgggttggg
//
LOCUS       DATDDI010000518         4117 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_677128, whole genome shotgun sequence.
ACCESSION   DATDDI010000518 DATDDI010000000
VERSION     DATDDI010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677128"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..384
                     /gene="atpH"
                     /locus_tag="VIU37_07430"
     CDS             <1..384
                     /gene="atpH"
                     /locus_tag="VIU37_07430"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HEY6013820.1"
                     /translation="LEERTATAKATFSTIVSPPLLNLIDLLLRRGRIEQLPHLADEFR
                     QLDNLRQGITLATATSASPLGPDEVRAITERMEQYTGGRIELDLKVDPSLLGGLVVQV
                     GDRLIDGSVRSRLERLRNQLVSGAL"
     gene            399..1934
                     /gene="atpA"
                     /locus_tag="VIU37_07435"
     CDS             399..1934
                     /gene="atpA"
                     /locus_tag="VIU37_07435"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEY6013821.1"
                     /translation="MAIRSDEITSIIKSAIDGFEAGVETRSVGTVVEVGDGIAQIYGL
                     AGALSSELLEFPGGLMGMALNLEEETVGAVILGDATAIKEGDTVKTTGRVVEVPVGAG
                     LLGRVVDPLGRPLDDKGPIASAGTRPVERIAPGVIVRQGVDTPVQTGIKAIDALIPIG
                     RGQRELIIGDRQTGKTAIALDTIINQKGKGLVCIYVAIGQKLSTVANTVAILEQHGAM
                     AHTVVVVAGAEDPAPLQYLAPYSGVAMGEEVMENGVEVPGQGLIKDALLVYDDLSKHA
                     WAYREMSLLLRRPPGREAYPGDVFYLHSRLLERAARMSDAEGGGSLTALPIVETQAGD
                     VSAYIPTNIISITDGQIFLETDLFNAGQRPALNIGISVSRVGSAAQTKAMKKVAGPLK
                     LDLAQYRALAAFAQFASDLDKATRDQLTRGEKLSEIVKQPQYQPLGVEKQVAILYVAT
                     TGKLDDVPTPRVREFESQFYRFLETEKPDILTELADKKALSEELATALDDAVDAFRTS
                     FLA"
     gene            1941..2792
                     /gene="atpG"
                     /locus_tag="VIU37_07440"
     CDS             1941..2792
                     /gene="atpG"
                     /locus_tag="VIU37_07440"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HEY6013822.1"
                     /translation="MASQRDIRRRIGSVKNIKQITRAMQFVAASKLKRAQDATLAARP
                     YSEKLDEVLADLAAVLTGDDHPLLADRETGKRLIVLITTDRPLSGPLNTNIVRFVARD
                     IVDTPGELGVITVGRKGRDAMRRTHVPLEAHFVTFGDRPTFADVLPLARLVTDDFLAG
                     TYGRVDIVYSHWVSTLVQRPTLVTILPVQPADDTEGIPGNQFIFEPSASAVLEQLLPR
                     YVATRIFQAVLEAKASEESSRMVAMKNATENAEELIEDLTLSYNKVRQANITREMIEI
                     ASGANAR"
     gene            2823..>4117
                     /gene="atpD"
                     /locus_tag="VIU37_07445"
     CDS             2823..>4117
                     /gene="atpD"
                     /locus_tag="VIU37_07445"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEY6013823.1"
                     /translation="MATATKAEKDSKTATGRVIQITGPVVDIEFPAGRLPGIYNAVEI
                     QREGQDPLVCEVQQHLGNNWVRAVAMTTTDGLARGVDAVDTGAPITVPVGESTLGRVF
                     DVLGHTIDGKAAVSADVHLPIHRSPPAFDQQSTEIEVFETGLKIIDLICPFKKGGKIG
                     IFGGAGVGKTVIIQELIRNVAQEHAGVSVFAGVGERSREGNDLIREMTESGVIAKTAF
                     VFGQMNEPPGARQRVGLTALTMAEYFRDEEKRDVLLFIDNIFRFTQAGSEVSALLGRM
                     PSAVGYQPNLATEMAGLQERITSTRNGSITSLQAVFVPADDYTDPAPATTFAHLDSTI
                     RLERSIAELGIYPAVDPLTSTSRVLDPNVVGQEHYDVARETQRVLQRYRDLQDIIAIL
                     GIDELSEEDKATVARARRLQRFASQPFFVGEVFTGREGK"
BASE COUNT          703 a         1482 c         1359 g          573 t
ORIGIN      
        1 ctcgaggagc gcacggcgac cgccaaggcg accttctcga cgatcgtgtc gccgcccttg
       61 ctcaacctga tcgacctgct gctgcggcgc ggccgcatcg agcagctgcc gcacctggcg
      121 gacgagttcc gccagctcga caaccttcgc caggggatca ccctggccac cgccaccagc
      181 gcgtcgccgc tcggtccgga cgaggtccgg gcgatcacgg agcggatgga gcagtacacc
      241 ggcggtcgga tcgagctcga cctcaaggtc gaccccagcc tgctgggcgg cctggtcgtg
      301 caggtcggcg accgcctgat cgacggaagc gtccggagcc gcctcgagcg cctgcggaat
      361 cagctcgttt cgggcgccct ctaggagatc tgagaccgat ggccattcgt tccgatgaga
      421 tcaccagcat catcaagtcg gcgatcgacg ggttcgaagc cggcgtcgag acccgcagcg
      481 tcggcaccgt cgtggaggtc ggcgacggga tcgcgcagat ctacgggctg gccggcgcgc
      541 tgtcgtccga gctcctcgag tttcccggcg ggctgatggg catggccctc aacctggagg
      601 aggagaccgt cggtgcggtc atcctgggcg acgcgaccgc gatcaaggaa ggcgacacgg
      661 tcaagaccac cgggcgggtc gtcgaggtcc cggtcggggc cgggctgctc ggccgggtcg
      721 tcgacccgct gggccggccg ctcgacgaca agggtccgat cgcctcggcc ggcacgcgac
      781 cggtggaacg gatcgctccg ggtgtcatcg tccgccaggg cgtcgacacg ccggtccaga
      841 ccggcatcaa ggccatcgac gcgttgatcc cgatcggccg tggccagcgc gagctgatca
      901 tcggcgaccg ccagaccggc aagaccgcca tcgccctcga cacgatcatc aaccagaagg
      961 gcaagggcct cgtctgtatc tacgtggcga tcggccagaa gctctcgacc gtcgcgaaca
     1021 cggtggccat cctcgagcag cacggcgcca tggcccacac cgtcgtggtc gtggcgggcg
     1081 ccgaggatcc cgcgccgctc cagtacctcg ccccgtactc gggcgtggcg atgggcgaag
     1141 aggtgatgga gaacggcgtg gaggtccccg ggcagggcct catcaaggac gcgctgctgg
     1201 tctacgacga cctcagcaag cacgcctggg cgtaccgcga gatgtcgctc ctcctgcgcc
     1261 gcccgccggg ccgcgaggcc tatccgggcg acgtcttcta cctccacagc cggctgctcg
     1321 agcgagccgc ccggatgagc gatgccgagg gcggtggctc cctgaccgcg ctgcccatcg
     1381 tcgagacgca ggccggcgac gtgtccgcct acatcccgac caacatcatc tccatcacgg
     1441 acggccagat cttcctcgag accgacctgt tcaacgccgg ccagcggccc gcgctcaaca
     1501 tcgggatctc ggtctcgcgc gtcggctcgg cggcccagac caaggcgatg aagaaggtcg
     1561 ccgggccgct caagcttgac ctcgcccagt accgcgccct ggcggcgttc gcccagttcg
     1621 cgtcggacct ggacaaggcc acccgcgacc agctgacccg cggcgagaag ctgtcggaga
     1681 tcgtcaagca gccgcagtac cagccgctcg gcgtggagaa gcaggtcgcg atcctgtacg
     1741 tcgccacgac cggcaagctg gacgacgtcc cgacgccgcg cgtccgcgag ttcgagagcc
     1801 agttctaccg cttcctcgag accgagaagc cggacatcct gaccgagctg gccgacaaga
     1861 aggcgctctc cgaggaactg gccacggccc tcgacgacgc cgtcgacgcc ttccgcacgt
     1921 cgttcctggc gtagtcgccg atggcaagcc agcgggacat ccggcgccgc atcggatctg
     1981 tgaagaacat caagcagatc acgagggcca tgcagttcgt cgccgcgtcc aagctgaagc
     2041 gggcccagga cgcgaccctc gcggcccggc cctacagcga gaagctggac gaggtcctgg
     2101 ccgacctggc cgcggtgctg accggcgacg accacccgct gctggcggat cgggagaccg
     2161 gcaagcggct gatcgtgctg atcaccacgg accggccgct gtcgggtccg ctcaacacga
     2221 acatcgtccg cttcgtcgcg cgcgacatcg tcgacacgcc gggcgagctc ggcgtgatca
     2281 ccgtcggtcg gaagggtcgt gacgcgatgc gccggaccca cgtcccgctg gaggcccact
     2341 tcgtcacctt cggcgatcgc cccacgttcg ccgacgtgct gccgctggcc cgcctggtga
     2401 ccgacgactt cctggcgggc acctacggcc gcgtcgacat cgtgtacagc cactgggtct
     2461 cgacgctcgt ccagcggccc accctcgtga cgatcctgcc ggtccagccg gccgacgaca
     2521 ccgagggcat cccgggcaac cagttcatct tcgagccgag cgcgtcggcc gtattggagc
     2581 agctgctccc gcgctacgtg gccacgcgca tcttccaggc cgtcctcgag gccaaggcca
     2641 gcgaggaatc cagccggatg gtggcgatga agaacgcgac cgagaacgcc gaagagctca
     2701 tcgaggacct gaccctctcg tacaacaagg tccgccaggc caacatcacc cgcgagatga
     2761 tcgagatcgc gtccggcgcg aacgctcgct gacgcacagg gacgcaggag gctagcacga
     2821 cgatggcgac agccacgaag gccgagaagg acagcaagac cgcgaccggc cgggtcatcc
     2881 agatcaccgg accggtcgtg gacatcgagt tcccggccgg acggctgccc ggcatctaca
     2941 acgcggtcga gatccagcgc gaaggccagg atccgctcgt ctgcgaggtc cagcagcacc
     3001 tcggcaacaa ctgggtgcgc gccgtcgcga tgaccacgac cgacgggctc gcccgcggcg
     3061 tcgacgccgt cgacaccggc gcgccgatca ccgttcccgt cggcgagtcg acgctgggcc
     3121 gcgtgttcga cgtcctcggc cacacgatcg acggcaaggc cgcggtgagc gcggacgtcc
     3181 acctgccgat ccaccggagt cccccggcgt tcgaccagca gtcgaccgag atcgaggtct
     3241 tcgagaccgg cctcaagatc atcgacctga tctgcccgtt caagaagggc ggcaagatcg
     3301 ggatcttcgg cggcgccggc gtcggcaaga cggtcatcat ccaggagctg atccgcaacg
     3361 tggcccagga gcatgccggc gtgtcggtgt tcgccggcgt cggcgagcgc tcgcgcgagg
     3421 gcaacgacct gatccgcgag atgaccgagt ccggcgtcat cgccaagacc gcgttcgtgt
     3481 tcggccagat gaacgagccg cccggagcac gccagcgggt cgggctgacc gccctgacga
     3541 tggccgagta cttccgtgac gaggagaagc gcgacgtcct cctcttcatc gacaacatct
     3601 tccgcttcac ccaggccgga tcggaggtct ccgccctcct cggccggatg ccgtcggcgg
     3661 tcggctacca gccgaacctg gcgaccgaga tggccggcct ccaggagcga atcacctcga
     3721 cccgcaacgg atcgatcacc tcgctccagg cggtcttcgt gccggccgac gactacacgg
     3781 acccggcgcc ggcgacgacc ttcgcccacc tcgactcgac gatccggctc gagcgcagca
     3841 tcgccgagct cgggatctac ccggccgtcg atccgctcac gtccacgtcg cgggtcctcg
     3901 acccgaacgt cgtcggccag gagcactacg acgtcgcccg cgagacgcag cgcgtcctgc
     3961 agcgctatcg cgacctccag gacatcatcg ccatcctcgg gatcgacgag ctgtccgagg
     4021 aggacaaggc caccgtcgcg cgggcccggc ggctgcagcg gttcgccagc cagccgttct
     4081 tcgtcggcga ggtcttcacc ggccgtgaag gcaagta
//
LOCUS       DATDDI010000519         4765 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_447979, whole genome shotgun sequence.
ACCESSION   DATDDI010000519 DATDDI010000000
VERSION     DATDDI010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4765
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447979"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..753)
                     /locus_tag="VIU37_07450"
     CDS             complement(<1..753)
                     /locus_tag="VIU37_07450"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6013824.1"
                     /translation="MTGVVFRLELRRSRSLAIWLGVVVFAYGAFVGGFYPVIRDNSKL
                     LDEYMAVFPKPMLAAFGMDGTLSNHGTFFNTYIGSMLWPIVAAIAAAILGTRMAAADL
                     DRGFIELPLATRIDRVRYLATGIAGQILILGGLAVLSIAGVIGVGAIVGAGFDTGRFL
                     MEVPLLFAFACALAGITTLLSVVTLSRAISAGVLAGGLLAMYLLDAVSKIEADLDWIG
                     TLTFFRYVRTTSAINLGVAPWSEMALFATIAVV"
     gene            complement(750..1682)
                     /locus_tag="VIU37_07455"
     CDS             complement(750..1682)
                     /locus_tag="VIU37_07455"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013825.1"
                     /translation="MAAIELNHMTRSYGRRRGVVDVTFEVTEGEAFGFLGPNGAGKTT
                     TIRVLMGFLRPTEGRAVIFGHDCWMEAPLAHRDVAFVGSDPAYLGELPAGEQLDVIGR
                     LRGLERGAWRGLAERLELDPTVPIRKLSRGNRQKVGVVQAFMGRERLLVMDEPTSGLD
                     PVMQREFLTLVAEARAAGQTVFLSSHNLPEVERCCDRVGIVRDGRLVDVASVQSLLNS
                     HWRAVNLVLGAIPAPDTFDLPNVRVLSVSGQMVHLMIQGEVNELLRRLAQLDVRDVSI
                     ATPDIEDVFLGFYEGQSSGPGSAAERPVAVGSVR"
     gene            complement(1814..2458)
                     /locus_tag="VIU37_07460"
     CDS             complement(1814..2458)
                     /locus_tag="VIU37_07460"
                     /inference="COORDINATES: protein motif:HMM:NF005123.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HEY6013826.1"
                     /translation="MRLEAIRRELADLHDELPRNGLVVWTGGNISARDPETGLVAIKP
                     SGVRYGELTPERMVVVDLDGRVVEGDLKPSSDTSSHLYVYRHRPDVNGVVHTHSRYAT
                     AFAAVGRSIPVHLTAQADEFGCEIPCAGFAFIGDDSIGRLVVEGIGDSTAILLKNHGV
                     FTIGGSARAAVKSAVMVEDIAATVFIALQLGTPDVLPDDAVARLHRRYTTVYGQ"
     gene            complement(2462..4180)
                     /gene="araB"
                     /locus_tag="VIU37_07465"
     CDS             complement(2462..4180)
                     /gene="araB"
                     /locus_tag="VIU37_07465"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF003154.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008741 - ribulokinase activity [Evidence
                     IEA];
                     GO_process: GO:0019568 - arabinose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HEY6013827.1"
                     /translation="MATFTIGVDFGTESGRAVLVDVADGRQVATAVHRYANGVIDTRL
                     PLADRDVRLPPDWALQDPDDYLEVFRQAVPAVLRAGGVDPTDVVGVGIDFTACTMLPV
                     KADGTPLCDLPEFRASPHAWVKLWKHHAAQPEADRINAVARATGQGWLDRYGGRISSE
                     WFFAKSLQILDEAPELYAAADRLIEAADWVVWRLTGVETRNTCTAGYKAMWSKRDGFP
                     DATYFAALDPRLANVVDEKMRRDLRPMGEAAGGISAEAAGWTGLRPGTAVAVANVDAH
                     VATPAATVIDEGRMVMIMGTSTCHIVLSRGEHAVPGMCGYVEDGVIPGFFGYEAGQSC
                     VGDHFSWFVEHAVPGSYEAEARERGMDLHGLLQEKAGRLRPGESGLLALDWWNGNRSV
                     LVDAELGGLLIGATLATTPEEIYRALVEATAFGTRVIIETFEAHGVPIREIVACGGLA
                     EKSPLIMQIYADVTGRPFKLSASDQTPALGAAMFGAVAAGVEAGGHRTIEDAARAMAS
                     LKDGGYEPVPEHVAVYDQLYREYLRLHDYFGRGENDVMKTLRRLRGEAAAAPVTGALP
                     AVAAEA"
     gene            4360..>4765
                     /locus_tag="VIU37_07470"
     CDS             4360..>4765
                     /locus_tag="VIU37_07470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013828.1"
                     /translation="MAVNVLASVRNGSSPVPGPIVARWLGRVDYREAHALQRRLAGER
                     ADGRIGDQLLLLEHPPVLTLGRNADPAHVLATPDQLRARGIEVIQVERGGEVTYHGPG
                     QLVAYPILALSPRGLMIRPLVRALEAALVATCA"
BASE COUNT          715 a         1718 c         1670 g          662 t
ORIGIN      
        1 cacgacggcg atcgtcgcga acagcgccat ctcgctccac ggcgcgacgc cgagattgat
       61 cgccgacgtc gtccggacgt agcggaagaa cgtcaaggtg ccgatccagt cgagatccgc
      121 ctcgatcttc gagacggcgt cgagcaggta catcgccagc aggccgccgg cgaggacgcc
      181 ggcgctgatc gcgcggctga gggtgacgac cgacagcagc gtggtgatgc cagccagcgc
      241 gcacgcgaat gcgaacagga gcggcacctc catcaggaac cggccggtgt cgaacccggc
      301 gccgacgatc gctcccacgc cgatcacgcc ggcaatcgac aggacggcca gcccgccgag
      361 gatgaggatc tgcccggcga tcccggtggc gaggtagcgg acccggtcga tccgggtggc
      421 cagcggcagc tcgatgaatc cgcggtcgag gtcggcggca gccatccgcg tcccgaggat
      481 cgcggccgcg atggccgcca cgatcggcca cagcatgctg ccgatgtacg tgttgaagaa
      541 cgtgccgtgg ttcgacagcg tgccgtccat gccgaaggcc gccagcattg gcttggggaa
      601 gacggccatg tactcgtcca gcagcttgct gttgtcgcgg atgaccgggt agaagccgcc
      661 gacgaacgca ccataggcaa agacgaccac cccgagccag atcgccagcg accggcttcg
      721 tcgcagctcc agccggaaga cgacgccggt catcggaccg accccacggc caccggccgt
      781 tcggcggcgg agccgggccc ggacgactgg ccctcgtaga accccaggaa gacgtcctcg
      841 atgtcgggcg tggcgatcga cacgtcgcgc acgtcgagct gtgcgaggcg ccgaaggagc
      901 tcgttgacct cgccctggat catcaggtgg accatctggc cgctgacgga cagcacccgg
      961 acgttcggca ggtcgaacgt gtccggtgcg gggatcgcgc cgagcacgag gttcacggca
     1021 cgccagtgcg agttcagcag cgactggacg gacgcgacgt cgaccagccg cccgtcgcgg
     1081 acgatcccga cccgatcgca gcagcgctcc acttcgggca ggttgtggga cgacaggaag
     1141 accgtctgcc cggctgccct ggcctcggcc acgagggtca ggaactcgcg ctgcatgacc
     1201 gggtcgaggc ccgacgtcgg ctcgtccatc accagcagcc gctcgcgtcc catgaacgcc
     1261 tggaccacgc ccaccttctg gcggttgccg cgggacagct tgcggatcgg cacggtgggg
     1321 tcgagctcga ggcgctcggc caggcctcgc cacgcgccgc gctcgagtcc gcgcagccgg
     1381 ccgatgacgt cgagctgctc gccggcggga agctccccga gataggccgg atcgctgccg
     1441 acgaacgcca cgtcgcggtg ggcgagcggg gcctccatcc agcagtcgtg cccgaagatc
     1501 acggcgcgcc cctcggtcgg gcggaggaag cccatgagca cgcggatggt cgtggtcttg
     1561 ccggcgccgt tcgggccgag gaagccgaac gcctcgccct cggtcacctc gaacgtgacg
     1621 tcgacgacgc cacgccggcg gccgtagctg cgggtcatgt ggttgagctc gatcgccgcc
     1681 atgcctctcc tccgcgccgc gtcgcgtgga gcctcgagcg ccacgtcgac gaaacgaggg
     1741 cgggtggacc gccgcggtga tcgtcgctcc cggggagctc gcttggcgag tgccgatcag
     1801 cccatccgac gggctattgg ccgtagaccg tcgtgtagcg gcggtggagg cgcgcgaccg
     1861 cgtcgtcggg gaggacgtcc ggcgtaccga gctgcagggc gatgaacacg gtggcggcga
     1921 tgtcctcgac catcaccgcc gacttgaccg cggcgcgggc cgacccgccg atcgtgaaga
     1981 cgccatggtt cttgagcagg atcgccgtcg agtcgccgat cccctcgacc accagccggc
     2041 cgatcgaatc gtcgccgatg aaggcgaagc ccgcgcacgg gatctcgcat ccgaactcgt
     2101 cggcctgggc ggtgagatgg acggggatcg accgcccgac cgccgcgaac gcggtcgcgt
     2161 agcgcgagtg cgtgtggacc acgccgttga cgtcgggccg gtgacggtag acgtagaggt
     2221 ggctggaggt gtccgaggac ggcttgaggt cgccctcaac gacgcggccg tcgaggtcca
     2281 ccacgaccat gcgctcgggc gtcagctcgc cgtagcggac acccgatggc ttgatcgcca
     2341 ccaggcccgt ctccgggtcg cgggcgctga tgttgccgcc ggtccagacg accagcccgt
     2401 tccgcggcag ctcatcgtgg aggtcggcca gctcgcgacg gatcgcttcg agacgcatcg
     2461 gtcaggcctc cgcggccacg gcgggcaggg cgcccgtcac cggcgccgcc gcggcctcgc
     2521 cccggagccg gcgcagggtc ttcatcacgt cgttctcgcc acgcccgaag tagtcgtgca
     2581 gccgcaggta ctcgcgatag agctggtcgt agacggccac gtgctccggg accggctcgt
     2641 agccgccgtc cttgaggctg gccatcgctc gcgccgcatc ctcgatggtg cggtgaccgc
     2701 ccgcctcgac acccgcggcg accgcgccga acatggccgc gccgagggcc ggcgtctggt
     2761 cggacgcgct gagcttgaac ggccgcccgg tcacgtccgc gtagatctgc atgatcagcg
     2821 ggctcttctc ggccaggccc ccgcaggcga cgatctcccg gatcggcacg ccgtgcgcct
     2881 cgaacgtctc gatgatcacc cgcgtgccga aggcggtcgc ctcaaccagc gcgcgataga
     2941 tctcctccgg cgtggtcgcc agcgtggcgc cgatcagcag cccgcccagc tcggcgtcga
     3001 ccagcaccga gcgattgcca ttccaccagt cgagcgcgag caggcccgac tcgcccggcc
     3061 ggagccgccc ggccttctcc tgcaggagcc cgtggagatc catgccgcgc tcgcgagcct
     3121 cggcctcgta cgagccgggc acggcgtgct cgacgaacca gctgaagtgg tcgccgacac
     3181 aggactggcc tgcctcgtaa ccgaagaagc ccgggatcac gccatcctcg acgtagccgc
     3241 acatgcccgg cacggcgtgc tcgccgcggg acaggacgat gtggcaggtc gaggtgccca
     3301 tgatcatgac catccggccc tcgtcgatga cggtcgcggc cggcgtggcg acgtgcgcgt
     3361 ccacgttggc cacggcgacc gcggtcccgg gccgcaggcc ggtccagccg gccgcctcgg
     3421 ccgagatccc gccggcggcc tcgcccatcg gccggaggtc ccggcgcatc ttctcgtcga
     3481 cgacgttcgc gagccgcgga tcgagggccg cgaagtaggt cgcgtccggg aacccgtcgc
     3541 gcttcgacca catggccttg tagccggccg tgcaggtgtt gcgcgtctcg acgccggtca
     3601 gccgccagac gacccagtcg gccgcctcga tcagccggtc ggccgccgcg tacagctccg
     3661 gcgcctcgtc gaggatctgg agcgacttgg cgaagaacca ctccgatgag atgcgcccgc
     3721 cgtaccggtc cagccagccc tggccagtcg cccgggccac ggcgttgatc cgatccgcct
     3781 ccggctgcgc ggcgtggtgc ttccagagct tgacccaggc atggggcgaa gcccggaact
     3841 cgggcaggtc gcacagcggc gtgccgtccg ccttcaccgg cagcatcgtg cacgccgtga
     3901 agtcgatgcc gaccccgacg acgtccgtcg ggtcgacgcc gcccgcgcgg aggaccgccg
     3961 gcaccgcctg gcggaagacc tcgaggtagt cgtccggatc ctggagcgcc cagtcgggtg
     4021 ggagccggac gtcacgatcc gccagcggca ggcgcgtgtc gatcacgccg ttcgcgtagc
     4081 ggtggacggc cgtcgcgacc tgccggccgt cggccacgtc gaccaggacg gcacgtcccg
     4141 attccgttcc gaagtcgacg ccgatcgtaa acgtggccat gtcgcgccct gctcctgcgg
     4201 acccggacgg ggccgggttg ctgcatacga atgcgctcat cgcgcccaac tggattccgg
     4261 tgaagcgtaa tcgttcccgc gacgaccgat gggcctcctc gggtcgccgg tcgactggcg
     4321 cgacccggcg ggatgaggcg ctcctgctat cgtgcggccg tggccgtcaa cgttctcgcc
     4381 tcggtgcgca acggatcgtc gcccgtcccg ggtccgatcg tcgcccgctg gctcggacgg
     4441 gtcgactacc gcgaggccca cgccctgcag cgccggctgg ctggcgagcg cgccgatgga
     4501 cggatcggcg atcagctgct gctcctcgag caccccccgg tcctgaccct gggacggaat
     4561 gccgacccgg cccacgtgct cgcgacgccg gaccagctcc gtgcccgcgg gatcgaggtg
     4621 atccaggtcg agcgtggcgg cgaggtcacc tatcacggtc ccggccagct ggtggcttac
     4681 ccgatcctcg cgctctcgcc acgaggactc atgatccggc cgctcgtccg cgcgctcgag
     4741 gcggcgctgg tggcgacctg cgccg
//
LOCUS       DATDDI010000520         3004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_573145, whole genome shotgun sequence.
ACCESSION   DATDDI010000520 DATDDI010000000
VERSION     DATDDI010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3004
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573145"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(237..2027)
                     /locus_tag="VIU37_07475"
     CDS             complement(237..2027)
                     /locus_tag="VIU37_07475"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6013829.1"
                     /translation="MPRSARGLIDAIPQLAWATDVAGRILDANPRWAQYAGTTPDMAL
                     PLRHALDVHPEDAPGFDLRWAAVLASGEAFERSVRLRRHDGVYRWFLVLVVPQRDEAG
                     AVVGWAGTATDIDDLQRAYRAADRLRLILDSVVEAIIVFDPITYRIEEVNRGALQLLG
                     RSRDQLTGLSMDALLRETDVERLTAVVGSLASGRLGATTTMLDYLPTDGGPIAMEVVL
                     QSVELPGGTRTILAIGRDIRDRIEAQVRLQRLAQAEHARAAELNAVIAAMGEAVVVCT
                     IDGTITLTNPAADALFPGVEPRTYDDIVGQLADPDGTAPRLGQAGGPVELRTVGEPEC
                     WIELSTYPVASGSSLTPAADETIVMMRDVTQARRLEAVRQTFIGVLSHELRTPVTTIF
                     GGAKLLARPNSNLDAETKLGIFRDIHDEAERLQRLVEDVVALNRFGEDAGEIGWEPVL
                     VQRLLPRVVRSEDGRWPGVTFELDIEHGLPTVSADPTYVEQVIRNLLSNAAKYGGIDS
                     TVTIRAEAGEREVIVRVLDDGPGFPIEETDRLFELFYRSPGTATVAGGAGIGLFVCAR
                     LIRAMGGRIWARPRDGHGAEFGFALPELEE"
     gene            2279..>3004
                     /locus_tag="VIU37_07480"
     CDS             2279..>3004
                     /locus_tag="VIU37_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013830.1"
                     /translation="MPELRALRQGGLVLRYAVLGSIAFVLAEVPETGSAGTSLETPSR
                     QAIWALVMNGELTYLADGRTLRVPAGHALHVPAGDPEHRLRASGGSRLAGFQPIDPSV
                     EITDRLLAEQGFEILGPASGGATAPLVVPTSARGAIPPGVIEARTSSMPPYAMTLAQF
                     GPSSGYTADWCDAPHWGLVTGGQLVIEYEHDVEIVTAGDVYHCPSGAPAHRLEAADPA
                     TVVDLTQIEAIVGNQRVAEWRRTA"
BASE COUNT          407 a         1085 c         1067 g          445 t
ORIGIN      
        1 tcgggatgcc cggccgtcga ttcttgccgc gcccatcgac gacttgcgca tcggcccgga
       61 ggtccacccc attgacgctg cgacagcgga tcgcttcccg cacggtgccg ggaatggatg
      121 aagtccgacc aggtggccgg gccgaccggg ccatggacgt gctgcagtac gggatggccg
      181 ggctcgccat cgccgtcgcg ctcctgctgg ccgcgctccg ctgaccggac cggcggctat
      241 tcctccagct cggggagggc gaacccgaat tcggccccgt gcccgtcgcg cgggcgggcc
      301 cagatccggc cacccatcgc ccggatgagc cgcgcgcaga cgaacagccc gatccccgcg
      361 ccgccggcca ccgtggccgt cccgggcgac cggtagaaga gctcgaacag ccggtcggtc
      421 tcctcgatcg ggaagcccgg gccgtcgtcc aggacgcgga cgatcacctc gcgctcgccc
      481 gcctccgcac ggatcgtgac cgtggagtcg atcccgccgt acttcgcggc gttcgacagg
      541 agattccgga tgacctgctc gacgtacgtc ggatcggcgc tgaccgtcgg caggccgtgc
      601 tcgatgtcga gctcgaacgt cacgccgggc cagcggccgt cctccgagcg cacgacccgg
      661 ggcaggagcc gctggacgag caccggctcc cagccgatct ccccggcgtc ctcgccgaag
      721 cggttgaggg cgacgacgtc ctcgaccagc cgttgcagcc gctcggcctc atcgtggatg
      781 tcgcggaaga tgcccagctt ggtctccgca tcgaggttcg aattgggccg ggccaggagc
      841 ttggccccgc cgaagatggt cgtgaccggc gtgcgcagct cgtgcgacag cacgccgatg
      901 aacgtctggc ggaccgcttc gagccggcgc gcctgcgtga cgtcgcgcat catcacgatc
      961 gtctcgtcgg ccgcgggtgt caggctcgag ccgctggcca ccggataggt cgacagctcg
     1021 atccagcatt ccggctcgcc gacggtccga agttcgacgg ggccgcccgc ctggccgagg
     1081 cgcggcgccg tgccgtccgg atccgcgagc tgacccacga tgtcgtcata ggtccggggt
     1141 tccacgccgg ggaagagcgc gtcggcggcc ggattggtca gcgtgatcgt gccgtcgatc
     1201 gtgcacacga cgaccgcctc gcccatggcc gcgatcacgg cgttcagctc ggccgcgcgg
     1261 gcgtgctcgg cctgggccag tcgctgcagg cggacctggg cctcgatccg gtcgcggatg
     1321 tcacggccga tggccaggat ggttcgcgtg ccgcccggca gctcgaccga ctggaggacg
     1381 acctccatcg cgatcgggcc gccgtctgtc gggagatagt cgagcatggt cgtcgtggct
     1441 cccagccggc cgctcgcgag gctcccgacg acggccgtga ggcgctccac gtcggtctcg
     1501 cgcagcagcg cgtccatgga caggccggtg agctggtcgc gcgaccgtcc gagcagctgg
     1561 agcgccccgc ggttcacctc ctcgatccgg taagtaatcg gatcgaacac gatgatcgcc
     1621 tcgacgaccg agtcgaggat cagccggagc cggtccgccg cccggtaggc ccgttgcagg
     1681 tcgtcgatgt cggtggccgt gccggcccag ccgacgaccg cgccggcctc gtcgcgttgc
     1741 ggaaccacca gcaccaggaa ccagcggtag acgccgtcat gccggcgcag gcggacgctc
     1801 cgctcgaagg cctcgccgct ggccaggacc gcggcccatc tgaggtcgaa cccaggggcg
     1861 tcctcggggt ggacgtcgag cgcgtgccgg agcgggagcg ccatgtccgg cgtcgtcccc
     1921 gcgtactgcg cccagcgtgg gttggcgtcg aggatccggc cggcgacgtc cgtggcccag
     1981 gccagctgcg ggatcgcgtc gatgagcccc cgtgccgatc gaggcacgag gcccgactcc
     2041 gtcctgctcg cttgcgccac tggccgttca ccttcatcga cgggcgtgat tcgtgtccgc
     2101 gaagggaatc atgacggacc acgagccgcg ctactggacc acggtccgcg tttcggatgg
     2161 tgcggcgtcg cgttgccgct ccatcgcatc ggcatcgcac ggcgggtccg cggctatact
     2221 gccaccccgg cagcgaaccc agatcgggcg tgaggtactc cgttccatgc atgtcgccat
     2281 gcccgagctt cgggcactcc gtcagggcgg cctcgttctc cgctatgcgg tcctcggatc
     2341 gatcgccttc gtcctggccg aggtgcccga gacggggtcg gccggcacgt cgctcgagac
     2401 gccgtcacgg caggcgatct gggccctggt gatgaacggt gagctcacgt atctggcgga
     2461 cggccgcacc ttgcgcgtcc ccgcaggcca tgcgctgcac gttcccgccg gcgatccgga
     2521 gcatcgcttg cgggcctcgg gtggctcgcg gctcgccggc ttccagccga tcgatccctc
     2581 ggtcgagatc accgaccggc tgctcgcgga gcagggcttc gagatcctcg gaccggcgtc
     2641 gggcggcgcg acggcgccgc tcgtcgtgcc gacctcggcc cggggggcga tcccaccggg
     2701 cgtcatcgag gcgcgaacgt cgtccatgcc gccgtacgcc atgaccctgg cgcagttcgg
     2761 gccgtcgagc gggtacaccg cggactggtg cgacgcgccg cactggggac tggtgaccgg
     2821 cggccagctg gtcatcgagt acgagcacga cgtcgagatc gtgaccgcgg gcgacgtcta
     2881 ccactgcccg tccggggcgc ccgcgcatcg gctcgaggcc gccgatccgg ccacggtcgt
     2941 ggacctcacg cagatcgagg cgatcgtcgg caaccagcga gtcgcggagt ggcggcgcac
     3001 cgcg
//
LOCUS       DATDDI010000521         4229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_32161, whole genome shotgun sequence.
ACCESSION   DATDDI010000521 DATDDI010000000
VERSION     DATDDI010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32161"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..1291)
                     /locus_tag="VIU37_07485"
     CDS             complement(107..1291)
                     /locus_tag="VIU37_07485"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEY6013831.1"
                     /translation="MYEDLIKRERDERGREEAEVRAIYEAAKVENRDPSAEEEERADK
                     IIASSDARKARIAKFEKLEADAKNAEELRRGLPEPTDVEPEDKPRNHTTQLIEMIRGL
                     KEGSAMQEAVWAIPQGEELRAIADFSDKASLFVSDFLGRLIVYMRIASPVLSLASVVS
                     GDNRPLIIPNLTADPTSYAPGEGTAITESTPTLGTVTATPVVYKALSYISWEASEDEQ
                     VGLLSAIARSQGRELGYKAGTAMSATILTGAGNAGTATGTPFFLATDLIDLFYSVPPD
                     ARAAGSWVGATGTLSKMRKFTDTYGQFLWVPGLTEGQPDRFLGRPVYEDPGLATPASA
                     TKSVLFGDFSVVFVKQGPMRVATSTDARFINDQIAIKTVYSAGAAVADAGSVKYLVSA
                     TS"
     gene            complement(1415..2416)
                     /locus_tag="VIU37_07490"
     CDS             complement(1415..2416)
                     /locus_tag="VIU37_07490"
                     /inference="COORDINATES: protein motif:HMM:NF016471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEY6013832.1"
                     /translation="MDEERAAWDAAYINDLPDSAFLYIKPGGEKDDTGRTTPRDLRMF
                     PVRDASGNIDMPHLRNAMSRIPQADLSQAIKDRLTAQCQRLMDQMSRSESYDEFEVRG
                     TDLWPDADFELRAEGDGLSLTGYAALYGVPSLPIPGGPRGAFTETIRQGAFARTLSRK
                     PDVTLRYQHNLTSLPLARTKAGTMSLAEDERGLRVAASLPDNEIGRPVRDAIRRGDIS
                     GMSFRFRVPSKAGEAWSADYTKRELLDIALGAEVSVVDFPAYPDTSVFVRHLAEAAEV
                     PTDDLAAAFAVLRDADARLSPEQRDLLYAAVGAKTDAPYLPPKLVELQKRLASAYGT"
     gene            complement(2426..3700)
                     /locus_tag="VIU37_07495"
     CDS             complement(2426..3700)
                     /locus_tag="VIU37_07495"
                     /inference="COORDINATES: protein motif:HMM:TIGR01537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEY6013833.1"
                     /translation="MGLIARARQGQDDEVRETLAEFLADDYGTAGGRTSSGIVVNRRA
                     ALSLTTIWRCIDLLSSSVAQAPKDIYLKVGGSSFAEYGRPDWMVTPNPSNPAYTFNDH
                     ISEVAISILIEGNFFVDVAPSVLDPQVLTVLDPARVNVKPGPVFEILDANGQVQSRRS
                     PMQVLHEAWMRLPGQLRGISPLEVLRRSIGSAIAAEDHAARFFGQGAALSFGVEVPGK
                     LDEPKKTEFRNSLKAKYAGNENSHAIGVLTDGAKFVPGLAPTPEQAQMLATRQFSVED
                     LCRPYGVPPQMAGSQVPGAASYASAEVWREEFRDYGVLPLAVHIEQQYARLLQVPAGV
                     TDPSASMQFKFNLDAIARTNLLTRYQAYQAGVMGGFLKPNEARAKEDMAGATGGDQLF
                     MQQQMVPIGDLGATKATEPLVTQPKPAVPAAA"
     gene            complement(3700..3891)
                     /locus_tag="VIU37_07500"
     CDS             complement(3700..3891)
                     /locus_tag="VIU37_07500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013834.1"
                     /translation="MKRAAAALRLLVLDGIGLEGGFLLLGTIALAVGAGFIAPAGPWL
                     VVGGMSVLVGILLAPRRGG"
     gene            complement(3888..>4229)
                     /locus_tag="VIU37_07505"
     CDS             complement(3888..>4229)
                     /locus_tag="VIU37_07505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013835.1"
                     /translation="ASWIESELGATVIDWPQSNLFAAREYERLMEAIRAGWLWHAGDA
                     GLTAHAMNAVARILPMGDAKFDRPSQTRDSAEQDRRVIDALKSLAMVHSAAVEAADRV
                     PTTSEPEFFTV"
BASE COUNT          595 a         1376 c         1563 g          695 t
ORIGIN      
        1 gtgccagttg gggctgttgc tgacccagag gatcttcaag ccgacctccc gacagagggg
       61 tttggccggg cgggcggtgt cggccgaccc gcccggctgt gggggattag ctggtggcgc
      121 tgaccaggta cttgaccgag cccgcgtcgg cgacggcagc gccggccgag tagacggtct
      181 tgatcgcgat ctggtcgttg atgaagcgcg cgtcggtgga ggtcgcgacg cgcatcgggc
      241 cctgcttgac gaacacgacg ctgaagtcac cgaagagcac gctcttggtg gccgaggcgg
      301 gggtcgcgag gcccgggtcc tcgtagaccg gccggccgag gaagcggtcg ggctggccct
      361 cggtcaggcc cggcacccac aggaactgcc cgtaggtgtc ggtgaacttc cgcatcttcg
      421 agagggtgcc ggtggcgccg acccacgagc ctgccgcacg agcatccggc gggacgctgt
      481 agaacaggtc gatgaggtcg gtggcgagga agaacggcgt gcccgtcgcg gtcccggcgt
      541 tgccggcccc ggtcaggatc gtcgcgctca tcgcggtgcc ggccttgtag ccgagctcgc
      601 ggccctggct gcgcgcgatg gcagacagga ggccgacctg ctcgtcctca gaggcttccc
      661 agctgatgta gctgagggcc ttgtagacga ccggcgtcgc cgtgaccgtg ccgagcgtcg
      721 gcgtggactc ggtgatcgcc gtgccctcac cgggggcgta ggacgtggga tcggcggtga
      781 ggttcgggat gatgagcggc cggttgtcgc ccgacacgac ggacgcgagg ctcaggacgg
      841 ggctcgcgat ccgcatgtag acgatcagcc gaccgaggaa gtcgctgacg aacaggctgg
      901 ccttgtccga gaagtccgcg atggcacgga gctcctcgcc ctggggaatg gcccagacgg
      961 cctcctgcat cgccgagcct tccttgaggc cccggatcat ctcgatgagc tgggtcgtgt
     1021 ggttcctcgg cttgtcctcg ggctcgacgt cggtcggctc ggggaggcca cggcgaagct
     1081 cctcggcgtt cttggcgtcg gcctcgagct tctcgaactt cgcgatccgg gccttgcggg
     1141 cgtcggacga ggcgatgatc ttgtcggccc gctcctcttc ctcggcggac gggtcgcggt
     1201 tctcgacctt cgccgcctcg tagatggcgc ggacttccgc ctcttcgcgt ccgcgctcgt
     1261 cgcgctcgcg cttgatgagg tcttcgtaca tgagttcgga tctccttctt gtcggaggtc
     1321 cgagcccttg acgtgccgcc cgtgatcccg cgtgccccga ggcctgccgg ggcgaaggtc
     1381 ggcggcgagg tgtggcccga tggacccttt ctgcttaggt gccgtaggca gaagccaggc
     1441 gcttctgcaa ctcgaccaac ttgggaggca ggtacggcgc gtcggtcttg gcaccgacgg
     1501 ccgcgtagag caggtcgcgc tgctcggggc tgaggcgcgc gtcggcatcg cggaggaccg
     1561 cgaacgccgc agcgagatcg tcggtcggga cctccgccgc ctccgcgagg tggcggacga
     1621 agaccgacgt gtcggggtag gcggggaagt cgaccacgct gacctcagcc ccgagcgcga
     1681 tatcgaggag ctcgcgcttc gtgtagtccg ccgaccaggc ctcgccggcc ttcgacggga
     1741 cacggaagcg gaagctcatg ccgctgatgt cgccgcggcg gatggcgtcg cggacgggtc
     1801 gcccgatctc gttgtcgggc agcgatgccg cgacgcggag gccgcgctcg tcctcggcca
     1861 ggctcatcgt cccggccttc gtccgggcca gcggcaggct cgtgaggttg tgctggtagc
     1921 ggagggtcac gtcgggcttg cgtgacaggg tccgggcgaa cgcgccctgc cggatcgtct
     1981 cggtgaacgc gccccgtggc ccgcccggga tcgggaggct cggcacgccg tacagtgcgg
     2041 cgtagccggt gagcgagagc ccgtcgccct cggcccgcag ttcgaagtcg gcatcgggcc
     2101 agaggtcggt gccgcggacc tcgaactcgt cgtaggactc cgagcggctc atctggtcca
     2161 tgagccgctg gcactgtgcc gtgaggcggt ccttgatcgc ctgcgacagg tcggcctgcg
     2221 ggatccggct catcgcgttc cgcaggtgcg gcatgtcgat gttgcccgag gcgtcgcgga
     2281 ccgggaacat ccgcaggtcg cgcggcgtgg tccggccggt gtcgtccttc tcgccgccgg
     2341 gcttgatgta gaggaaggcc gagtcgggaa ggtcgttgat gtaggccgcg tcccaggccg
     2401 ctcgctcttc gtccatcgtc gtctcctacg ccgcggccgg tacggccggc ttgggttggg
     2461 ttacaagggg ttcggtcgcc ttcgtcgccc cgaggtcgcc gatcgggacc atctgctgct
     2521 gcatgaagag ctggtcgccg ccagtggcac cggccatgtc ctctttcgca cgggcctcgt
     2581 tgggcttgag gaagccgccc atgacgcctg cctggtaggc ctggtaacgg gtgagcaggt
     2641 tcgtccgggc gatggcgtca aggttgaact tgaactgcat cgacgcggac ggatcggtga
     2701 cgcctgcggg gacttggagc aggcgcgcgt actgctgttc gatgtggacc gcgagcggga
     2761 ggacgccgta gtcgcggaac tcctcgcgcc acacctcggc cgaggcgtag gacgctgcgc
     2821 cggggacctg gctgccggcc atctgcggcg gcacgccgta ggggcggcac agatcctcga
     2881 cgctgaactg ccgggtggcg agcatctggg cctgctcggg cgtcggggcg agcccgggga
     2941 cgaactttgc gccgtcggtc aggacgccga tcgcgtgact gttctcgttg cccgcgtact
     3001 tcgccttgag cgagttgcga aactcggtct tcttgggctc gtcgagcttg ccgggcacct
     3061 cgacgccgaa cgacagcgcc gcgccctggc cgaagaaccg cgcagcgtga tcctcggccg
     3121 cgatggccga tccgatcgac cgacggagca cctcgagcgg actgatgccg cggagctgac
     3181 ccggcagccg catccatgct tcgtggagca cctgcatcgg gctgcgacgc gactgcacct
     3241 ggccattcgc gtcgaggatc tcgaagaccg ggccgggctt gacgttcacc cgcgccggat
     3301 cgaggacggt gagcacctgc gggtcgagaa ccgagggcgc aacgtcgacg aagaagttgc
     3361 cctcgatcag gatcgagatc gcgacctcgc tgatgtggtc gttgaaggtg taggcgggat
     3421 tcgacgggtt cggcgtgacc atccagtcgg gcctgccgta ctccgcgaac gacgagccgc
     3481 cgaccttgag gtagatgtcc ttgggcgcct gcgcgaccga cgaggagagc aggtcgatgc
     3541 accgccagat cgtcgtgagc gacagcgcgg cgcggcggtt gacgacgatg cccgacgatg
     3601 tccgcccgcc ggcggtgccg tagtcatcgg cgaggaactc cgcgagcgtc tcgcggacct
     3661 cgtcgtcctg cccctgtcgt gcccgagcga tgaggcccat cagccacccc tccgcggcgc
     3721 gagcaagatc ccgacgagga cgctcatgcc gcccacgacg agccacgggc ccgccggcgc
     3781 gatgaagccc gcgcccacgg cgagggcgat ggttccaagg agcaggaagc cgccctcgag
     3841 gccgatgcca tcgaggacca ggaggcgaag agccgccgcc gcgcgcttca taccgtgaag
     3901 aactcgggct cggacgtggt cgggacgcgg tcggctgcct cgacggctgc cgagtggacc
     3961 atcgcgagcg acttgagggc gtcgatgacg cggcggtcct gctcggccga gtcgcgggtc
     4021 tgcgacggcc ggtcgaactt cgcgtcaccc atcggcagga tccgcgcgac cgcgttcatg
     4081 gcgtgagccg tcaggcccgc gtcgccggcg tgccagagcc agcctgcccg gatggcctcc
     4141 atgaggcgct cgtattcgcg ggcggcgaag aggttggact gcggccagtc gatgacggtc
     4201 gcaccgagct cgctctcgat ccacgaggc
//
LOCUS       DATDDI010000522         1700 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_386087, whole genome shotgun sequence.
ACCESSION   DATDDI010000522 DATDDI010000000
VERSION     DATDDI010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386087"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VIU37_07510"
     CDS             <1..542
                     /locus_tag="VIU37_07510"
                     /inference="COORDINATES: protein motif:HMM:NF014895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HEY6013836.1"
                     /translation="AREELSREGVETRLPPVGIMVELPSAAIIADRLARECDFFSIGT
                     NDLIQYTIGIDRQNKDVAYLYKPLHLAVLRLLKLVCDAGRAASIPVSMCGDMAGEPMN
                     ALVLAGLGVSELSMNGPSIPFVKRVLRAARASDGRALVERLLALSTTDDIEREVRAEM
                     TSRFPGLLGEESAAGPVPG"
     gene            668..>1700
                     /gene="metK"
                     /locus_tag="VIU37_07515"
     CDS             668..>1700
                     /gene="metK"
                     /locus_tag="VIU37_07515"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004083625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEY6013837.1"
                     /translation="MSDYLFTSESVTEGHPDKMADQISDAVLDAVLGQDKRGRVACET
                     LLKTGYVMIAGEITTSARIDYSRLAREVVKRIGYTDGDMGFDGNTCGVLVAVDQQSPD
                     IGQGVDTGGAGDQGMMFGYACDETPELMPAPIQYAHAVTRQLAKARRAGLDFLRPDGK
                     SQVSVEYQAGRPVRIDTVVVSTQHAAEVSNKRLHAAVREEVIAKALPKRLIDRKTKIF
                     INPTGRFVIGGPMGDTGVTGRKIIVDTYGGMGRHGGGAFSGKDPSKVDRSAAYMGRHI
                     AKNVVAAGLARRCEVQVAYAIGVAEPVSVMVDTFGTGLLPDERIAAAVREVYDLKPRS
                     IIKQLDLLRP"
BASE COUNT          257 a          609 c          599 g          235 t
ORIGIN      
        1 aggcgcgcga ggagctctct cgcgagggcg tcgagacgcg gctgccgccg gtcggcatca
       61 tggtggagct gccctcggcc gcgatcatcg ccgaccggct ggcgcgcgag tgcgacttct
      121 tctccatcgg gacgaacgac ctcatccagt acacgatcgg gatcgaccgg cagaacaagg
      181 acgtcgccta cctctacaag ccgctccacc tcgccgtcct ccgcctgctg aagctcgtct
      241 gcgacgccgg gcgagccgcg agcatccccg tgtcgatgtg cggcgatatg gcgggggagc
      301 cgatgaacgc cctcgtcctc gccgggctgg gcgtctcgga gctgtccatg aacgggccgt
      361 ccatcccgtt cgtgaagcgg gtcctgcggg cggccagggc gtcggacggg cgtgccctcg
      421 tcgagcggct gctcgccctg tccaccacgg acgacatcga gcgcgaggtg cgcgccgaga
      481 tgacgagccg cttcccgggg ctcctcggcg aggagtccgc ggcgggtccg gtccccggat
      541 gaccggccgc gcgggcctcc gtcggcccgc cgcggaccgt gcgcggctgg acgggcctcc
      601 gccatattga cgggcgggtg ggggaacgcg taccttccct gccccgccgc gagggccgat
      661 tcccatgatc agcgactatc tcttcacctc ggagtccgtc accgaggggc atcccgacaa
      721 gatggcggac cagatctcgg acgcggtgct cgacgccgtg ctcgggcagg acaagcgcgg
      781 ccgcgtcgcg tgcgagaccc tactcaagac gggctacgtc atgatcgccg gggagatcac
      841 cacctcggcg cggatcgact actcgcgcct cgcccgggag gtcgtgaagc gcatcggcta
      901 caccgacggg gacatgggct tcgacgggaa cacctgcggc gtgctcgtcg ccgtcgatca
      961 gcagtccccc gacatcggcc agggcgtcga cacggggggt gcgggcgatc aggggatgat
     1021 gttcgggtac gcctgcgacg agacgccgga gctcatgccg gcgcccatcc agtacgcgca
     1081 cgccgtgacc cgccagctcg ccaaggcgcg ccgcgccggg ctcgacttcc tgcgccccga
     1141 cggcaagagc caggtctccg tcgagtacca ggccggccgg cccgtccgca tcgacaccgt
     1201 ggtcgtgtcc acgcagcacg ccgccgaggt ctcgaacaag aggctgcacg ccgccgtccg
     1261 cgaggaggtc atcgcgaagg cgctgccgaa gaggctcatc gacaggaaga ccaagatctt
     1321 catcaacccg acgggccggt tcgtgatcgg cgggcccatg ggcgacacgg gggtcaccgg
     1381 ccgcaagatc atcgtcgaca cctacggcgg catgggccgc cacggcggcg gcgccttctc
     1441 cggcaaggac ccgtcgaagg tcgaccgctc ggcggcgtac atgggccgcc acatcgcgaa
     1501 gaacgtggtc gcggcgggcc tggcgcggcg ctgcgaggtg caggtcgcct acgccatcgg
     1561 cgtcgcggag cccgtctccg tgatggtcga caccttcggc acgggcctgc tcccggacga
     1621 gcggatcgcg gcggcggtgc gcgaggtcta cgacctgaag ccccgctcca tcatcaagca
     1681 gctcgacctg ctccggcccg
//
LOCUS       DATDDI010000523         2829 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_281946, whole genome shotgun sequence.
ACCESSION   DATDDI010000523 DATDDI010000000
VERSION     DATDDI010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281946"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VIU37_07520"
     CDS             <1..250
                     /locus_tag="VIU37_07520"
                     /inference="COORDINATES: protein motif:HMM:NF013103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEY6013838.1"
                     /translation="ADGTVVIPTGVAHGFLALEPLELLYLVTNEYDGTDELGFAWDDP
                     VVGVAWPEVQGTPGGRPITSERDASNPTLAELVDRLRD"
     gene            376..2673
                     /locus_tag="VIU37_07525"
     CDS             376..2673
                     /locus_tag="VIU37_07525"
                     /inference="COORDINATES: protein motif:HMM:NF025229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlgD immunoglobulin-like domain containing
                     protein"
                     /protein_id="HEY6013839.1"
                     /translation="MRKTAVSLALILVATLLVAVPTVSAVSGGAKVVIIVGATEGTTA
                     SYRRAADEAYATAIQYTPDVVKVYSPNATWARVKAAVTGASVVIYLGHGNGWPSPYTY
                     DPQFTTKDGFGLNKVENAGDSNRVYYGEPYISTLQFAPGAVVILNHLCYASGNSESGQ
                     PEPTVDVARQRVDNYASAFLKAGAAAVIADGHNGVSGYIRDLFTTSGSIESLWANQPG
                     TNGNIVSFPSVRTPGATAYQDPETPSSGFYRSLVVRSAGAMNNGVPTGGAGSGGDTSA
                     DPPSLTIPGNASVAVDAAGLFGDPALGSAPVRTLSAGTRLRVVGQTAAVSAQAMPLVQ
                     VQGLDDPTINGFVEVANLVPRDSTPPSLTAVSLGTGAISPNGDGVADQAVLSGQFSEA
                     ANWTITISSASGNVVFQQSGSGPAFQAVWNPLASGQYVADGGYVVTVSAVDAWQNRAA
                     DYRGTIAVDSGPAQLASLAPAATTVSTFSPNGDGYRDTVALTATLSEPGSLAVAVHPL
                     NGTVLRTWTVPTTGAPTSVAWDGRDGNGNVAADGRYVMSVTPVDAGGNAGTPQERAVS
                     LATGLGWVASSLPVFYPQDRDSLAPTTTLSFTLARPMTVTWTLRDAAARIVDTHLSAT
                     PLPAGTQSWTFDGRRSDGTMLPPGRYLSYVTASDGSVVVAQSVAFEADAFLVKPSDAT
                     PGRGQTITVNVTSAEPLSASPRLSIYEPGLAAWSTSLKRVSGSAYKATIRLRTGGGAG
                     TVSFRVTGVDVTGATQRTTRGFPLH"
BASE COUNT          412 a         1101 c          933 g          383 t
ORIGIN      
        1 ggccgacggc accgtcgtca tccccaccgg cgtcgcgcac ggattcctcg cgctggagcc
       61 cctcgagctg ctgtacctcg tcacgaacga gtacgacggg accgacgagc tcggcttcgc
      121 ctgggacgac ccggtcgtgg gcgtcgcctg gccggaggtg caggggacgc ccggcggacg
      181 tccgatcacc tcggagcgcg acgcatcgaa tccgacgctc gcggagctcg tcgatcgcct
      241 gcgcgactag ctccgcatac gacccgaccg cccgatggtc ctacggctct cgggaccttc
      301 ccgcgataga gcacgacggt gccctggggg aggctgacgg tcgtaccgcg gcacgccccg
      361 atccctggag ctccattgcg caagacggcc gtctccctgg ccctgatcct cgtcgccacg
      421 ctgctcgtcg ccgtcccgac ggtctcggcg gtgagcggcg gcgccaaggt cgtgatcatc
      481 gtgggcgcga ccgagggcac cacggcctcg taccgcaggg cggccgacga ggcctacgcg
      541 accgcgatcc agtacacgcc ggacgtcgtc aaggtctaca gcccgaacgc gacgtgggcg
      601 cgggtcaagg cggcggtcac cggcgcctcc gtggtcatct acctcggaca cggcaacggc
      661 tggccgagcc cgtacacgta cgacccgcag ttcacgacca aggatggctt cgggctcaac
      721 aaggtcgaga acgccggcga cagcaatcgc gtctactacg gcgagccgta catctcgacc
      781 ctgcagttcg cgccgggcgc ggtcgtgatc ctgaaccacc tctgctacgc ctccggcaat
      841 tccgaatccg gccagccgga gccgaccgtc gacgtcgcca ggcagcgggt cgacaactac
      901 gcctccgcgt tcctcaaggc cggcgccgcc gccgtcatcg ccgacggcca caacggcgtg
      961 agtggctaca tccgcgacct gttcacgacc agcggctcga tcgagtccct gtgggccaac
     1021 cagcccggca cgaacggcaa catcgtctcg ttcccgtccg ttcgcacgcc gggtgcgacc
     1081 gcctaccagg atccggagac gccgtcctcc ggtttctacc ggtcgctcgt cgtccgttcg
     1141 gccggcgcga tgaacaacgg cgtcccgacc ggcggggcgg ggagtggcgg tgacacgagc
     1201 gccgacccgc ccagcctgac gatccccggc aacgcctcgg tcgcggtcga cgcggcgggc
     1261 ctcttcggcg atccggccct cgggtccgcg cccgtccgga cgctcagcgc cgggacgcgg
     1321 ctgcgcgtcg tcggccagac cgccgcggtc tccgcccagg ccatgccgct cgtccaggtc
     1381 caggggctcg acgacccgac gatcaacggc ttcgtcgagg tcgccaacct ggtcccacgc
     1441 gacagcacgc cgccctcgct gacagccgtc agcctcggca ctggcgcgat ctcgccgaac
     1501 ggcgatggcg tggccgacca ggccgtgctc tccgggcagt tcagcgaggc ggccaactgg
     1561 acgatcacga tctcgagtgc ctccggcaac gtcgtcttcc agcagtccgg atcgggtccc
     1621 gcgttccagg ccgtctggaa cccgctcgcg agcggccagt acgtcgccga cggcggctac
     1681 gtcgtcaccg tgtcggccgt ggatgcctgg cagaaccgag cggccgacta ccgcggcacg
     1741 atcgcggtcg acagcggacc cgcgcaactg gcctcgctcg cgccggcggc caccaccgtg
     1801 tccaccttct cgcccaacgg cgacggctac cgcgacacgg tcgcactgac cgccacgctc
     1861 tcggagccgg gctcgctcgc cgtcgccgtc caccccctga acgggacggt cctcaggacc
     1921 tggacggtcc ccaccaccgg cgcgccgacc agcgtcgcgt gggacggccg cgacggcaac
     1981 ggcaacgtcg ccgcggacgg gcgatacgtc atgtcggtca cgccggtcga cgccggcggc
     2041 aacgccggca cgccccagga gcgcgccgtc agcctcgcga ccgggctggg ctgggtcgcg
     2101 agctcgctgc cggtcttcta tccgcaggat cgggactcgc tggcccccac gacgacgctc
     2161 tccttcaccc tggcgcgccc gatgaccgtc acctggacgc tccgggacgc cgccgccagg
     2221 atcgtcgaca cccacctctc ggcgacgccg cttcccgccg ggacgcagtc gtggaccttc
     2281 gacggccgcc gctccgacgg gaccatgctt ccgcccggcc gctacctgtc gtacgtgacg
     2341 gcgagcgatg gctcggtcgt ggtggcgcag tccgtggcgt tcgaggcgga cgccttcctg
     2401 gtcaaaccaa gcgacgcgac cccgggtcgc ggccagacca tcacggtcaa cgtgacctcg
     2461 gccgagccac tctcggcgag cccgcgcctg tcgatctacg agcccgggct ggcggcctgg
     2521 agcaccagcc tcaagcgcgt gtccggcagt gcctacaagg ccaccatccg gctgcgaacc
     2581 ggcggcggcg ccgggacggt ctcgttccgg gtgaccggcg tggacgtgac cggcgccacc
     2641 cagcgcacga cgcgcggctt cccgctgcac tgaccgcacc agaccccacc agacccaccc
     2701 gtaccatgcc cgaccgggac cttcggccgg tagacccggg cacgctcgct tcctagagtc
     2761 gggcggcctg gctccgccga cgaggtatgc cgtgccgatg gtcccgtgac gcccgaccga
     2821 ccgacgagg
//
LOCUS       DATDDI010000524         1709 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_178028, whole genome shotgun sequence.
ACCESSION   DATDDI010000524 DATDDI010000000
VERSION     DATDDI010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178028"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..871)
                     /locus_tag="VIU37_07530"
     CDS             complement(83..871)
                     /locus_tag="VIU37_07530"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6013840.1"
                     /translation="MRASTVWTILRREWQETVRNRLLMSTILVPPLILTIAPIALSGF
                     VGDRSLPPQFASQILTQRPDWADFTRTELAGAFTVQQFLAFFLLMPAYIPLSIATFSI
                     IGEKQARSLEPVLAAPIRTAELLAGKAIAALVPGIVAGWATYLVFVSLATLVYGPHLL
                     GVVTDPSWLAGVFVLGPAVGLSSVVAAVIVSSRVNDPRVAQQIGGVIIVPIIGVTLLQ
                     ATGTLLVGASGYLVLAAIVFAISLIGLRIGVALFDREAILTRWR"
     gene            complement(871..>1709)
                     /locus_tag="VIU37_07535"
     CDS             complement(871..>1709)
                     /locus_tag="VIU37_07535"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013841.1"
                     /translation="PNGAGKTTTVRLLAALIEPTEGSASVDGLDVVRQPDDVRARVGI
                     LTETPGLYEKLSASANLDFFGRLYGLDAVTRAARIERYLRLFSLWDRRDDSAGGFSKG
                     MKQKLAIARALLHEPSVVFLDEPTAALDPEAAWIVREAIEAIRRSGRTIVLATHNLYE
                     ADRLCDRVAFVRGGLLRVDSPADLRESLGGRGVEVEFAGEPAPAALVTARGVAGISAA
                     ELLDHRLIVSAAEPRAVAPALVRALVTAGSDIVAVRERATSLEQIYFDVMGVRPEGDE
                     AA"
BASE COUNT          285 a          594 c          617 g          213 t
ORIGIN      
        1 atcgagggcc gatcactcct gtcacggtgg catggatacc tgacagaaca cgtcaggagt
       61 cccaacggtt tcctgctcgt ggtcagcgcc agcgcgtcag gatcgcctcc cgatcgaaca
      121 gcgcgacgcc gatccgcagc ccgatcaggc tgatggcgaa gacgatggcg gccagcacga
      181 gataaccgct cgccccgacg agcagcgtcc cggtggcctg caggagggtc accccgatga
      241 tcggcacgat gatcacgccg ccgatctgct gcgcgacccg cggatcgttg acccgcgagc
      301 tgacgatgac cgccgcgacc accgacgaca gcccgaccgc cggaccgagc acgaacacgc
      361 ccgccagcca gctcgggtcg gtgacgacgc cgaggaggtg cgggccgtag accagcgtgg
      421 cgaggctcac gaagaccaga taggtcgccc agccggccac gatccccggg acgagcgccg
      481 cgatcgcctt ccccgccagc agctcggcgg tccggatggg cgcggccagg accggttcga
      541 ggctgcgcgc ctgcttctcg ccgatgatcg agaacgtcgc gatcgacaac gggatgtagg
      601 ccggcatcag gaggaagaac gcgaggaact gctggacggt gaacgcgccg gcgagctcgg
      661 tgcgagtgaa gtcggcccaa tccgggcgct gggtcaggat ctggctggcg aactgcggcg
      721 gcagcgaccg atcgccgacg aaacccgaca gcgcgatcgg ggcgatcgtc aggatcagcg
      781 gcgggacgag gatggtggac atcaggagcc ggttccggac ggtctcctgc cactcgcgcc
      841 gaaggatcgt ccagacggtc gaggcgcgca tcaggcggcc tcgtcgcctt cgggccgcac
      901 gcccatgacg tcgaagtaga tctgctcgag gctggtcgcg cgctcgcgca cggcgacgat
      961 gtccgacccg gcggtgacga gcgcgcgaac gagcgccggg gcaaccgctc gcggttcggc
     1021 ggcactcacg atgagccgat ggtcgaggag ctcggccgcg ctgatgccgg cgacaccacg
     1081 cgcggtgacc agcgcggcgg gtgccggttc gccggcgaac tcgacctcga cgccacgccc
     1141 gcccagcgat tcgcgcaggt ccgccggcga atccacgcgc aggaggccgc cccggacgaa
     1201 ggcgacccgg tcgcacagcc ggtccgcctc gtagaggttg tgggtggcca gcacgatcgt
     1261 ccggccggac cgccggatcg cctcgatcgc ctcgcgaacg atccacgcgg cctcggggtc
     1321 gagcgccgcc gtcggctcgt cgaggaagac gaccgagggc tcgtggagca gcgcccgggc
     1381 gatcgccagc ttctgcttca tgcccttgct gaacccaccg gccgagtcgt cgcggcggtc
     1441 ccacagcgag aagagccgta ggtagcgctc gatccgcgcc gctcgcgtga cggcgtcgag
     1501 cccgtacagg cggccgaaga agtcgaggtt ggcggacgcc gacagcttct cgtacagccc
     1561 gggcgtctcg gtcaggatcc cgacgcgggc ccggacgtcg tcgggctggc gcacgacgtc
     1621 gagcccgtcg accgaggccg agccctcggt gggctcgatg agcgcagcga gcaggcggac
     1681 cgtcgtggtc ttcccggcgc cgttcgggc
//
LOCUS       DATDDI010000525         1834 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_136463, whole genome shotgun sequence.
ACCESSION   DATDDI010000525 DATDDI010000000
VERSION     DATDDI010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136463"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..787)
                     /gene="groEL"
                     /locus_tag="VIU37_07540"
     CDS             complement(<1..787)
                     /gene="groEL"
                     /locus_tag="VIU37_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004585059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY6013842.1"
                     /translation="MSKQIIFDETARRSLKRGIDRLADAVKVTIGPKGRNVVLDKKFG
                     SPTITNDGVTIARDIELDDPFENMGAQLLKEVATKTDDVAGDGTTTAVVLGQALVSEG
                     LRVVTAGANPMVVKRGIEIAVEAIVAEIAKQSRPVDNRAQIAAVAAISAADPEVGEII
                     AEVMDKVGKDGVITVEEGQSLGLEKEYTEGMQFDRGYLSAYFVTDPERMEVVLENPVI
                     LIHEKKISSMKDLLPILEQIARAGRPLLIVAEDVDGEALATLVV"
     gene            complement(839..1135)
                     /gene="groES"
                     /locus_tag="VIU37_07545"
     CDS             complement(839..1135)
                     /gene="groES"
                     /locus_tag="VIU37_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020055847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEY6013843.1"
                     /translation="MSTKLRPLGDRVVIQPSAREEMTKSGIVLPDTAKEKPQEGTILA
                     AGPGRILEDGKREAMDVKSGDKVLYAKYAGTEFKVDGEDLLIVSQKDILAIVTD"
     gene            complement(1392..>1834)
                     /locus_tag="VIU37_07550"
     CDS             complement(1392..>1834)
                     /locus_tag="VIU37_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013844.1"
                     /translation="AEQTGMLPSDRLVDLSISSTPTHDLLTFVFAPSTPGPGGPPQGT
                     LSAARPPFSFAGSGQEFPLLGQHAIQLRFSAMTIASESGEATYHGPVDVKPGLPALRE
                     AIQFDASEGIVAWYVGYDGPGCVTLVREGNDVTVMIAHAEAPAG"
BASE COUNT          262 a          600 c          635 g          337 t
ORIGIN      
        1 tgaccacgag ggtcgcgagc gcttcaccgt ccacgtcctc ggcgacgatc agcagcgggc
       61 gccccgcgcg ggcgatctgc tcgaggatcg ggagcaggtc cttcatcgag ctgatcttct
      121 tctcgtggat caggatgacc gggttctcga gcaccacttc catgcgctcc ggatcggtca
      181 cgaagtaggc cgagaggtag ccccggtcga actgcatgcc ctcggtgtat tccttctcga
      241 ggccgaggct ctggccttcc tcgacggtga tgacgccgtc cttgccgacc ttgtccatca
      301 cctcggcgat gatctcgcca acttcggggt ctgccgcgct gatcgcggcg accgccgcga
      361 tctgggcccg gttgtcgacc ggccgggact gcttcgcgat ctcggcgacg atcgcctcga
      421 cggcgatctc gatgccgcgc ttgacgacca tcgggttggc cccggcggtc accacgcgga
      481 gcccctcgga gacgagcgcc tggccgagca cgaccgcggt ggtggtgccg tcgccggcga
      541 cgtcgtcggt cttggtggcg acttccttga gcagctgggc gcccatgttc tcgaacgggt
      601 cgtcgagctc gatgtcccgg gcgatggtca cgccgtcgtt ggtgatggtc ggcgaaccga
      661 acttcttgtc gagcacgacg ttgcggccct tggggccgat cgtgaccttg accgcgtcgg
      721 cgaggcggtc gatgccacgc ttcagcgagc gacgagcggt ctcgtcgaag atgatctgct
      781 tagacaattc gtgtgtccct ccaggaacct gcgggtggtc gaacgcggcg cgtcgcggtc
      841 agtccgtgac gatcgccagg atgtccttct ggctgacgat gaggagatcc tcgccgtcga
      901 ccttgaactc cgtaccggcg tacttggcgt agaggacctt gtcgccggac ttgacgtcca
      961 tggcttcgcg cttgccatcc tcgaggatcc gaccgggtcc ggcagcgagg atcgtgcctt
     1021 cctggggctt ctccttggcg gtgtccggca ggacgatgcc gctcttggtc atctcctcgc
     1081 gggcgctcgg ctggatgacc acgcggtcgc cgagcgggcg aagcttggtc gagatcgcag
     1141 tggctttggc caacgtgcat tcctcctgtg acggccagga ccgaccgtcg ggcgtggatc
     1201 gcgggagacc gtccgtccag gatgggacgg aggcgagacc tccctgacac ctctttggcg
     1261 gcatcgacgt gggccgatcc gatcctccag ccgggtgtcc atccggcgac gtcggattcg
     1321 gtgctccgcg atgcttagca ctctaacctc gagagtgcta agcggagact agcgaacgtg
     1381 ggtcgaggct gtcaacctgc cggcgcctcg gcgtgcgcga tcatcaccgt cacgtcgttg
     1441 ccctcgcgca cgagcgtgac gcagcccggc ccgtcatagc cgacgtacca ggcgacgatc
     1501 ccctcggagg cgtcgaactg gatcgcctcc cggagcgcgg gcaggccggg cttgacgtcc
     1561 acagggccgt gataggtcgc ctcgccggac tcgctggcga tcgtcatcgc gctgaaccgc
     1621 agctggatcg cgtgctgccc gagcaacggg aattcctggc cgctgccggc gaagctgaac
     1681 ggaggcctgg cggcgctgag cgtcccctgc ggcgggccgc ccggcccggg tgtcgacggc
     1741 gcgaagacga acgtcagcag gtcgtgggtg ggggtcgagg agatcgacag gtccacgagc
     1801 cggtcggagg gcagcatccc ggtctgttcc gcga
//
LOCUS       DATDDI010000526         1585 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_552808, whole genome shotgun sequence.
ACCESSION   DATDDI010000526 DATDDI010000000
VERSION     DATDDI010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552808"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..822
                     /locus_tag="VIU37_07555"
     CDS             <1..822
                     /locus_tag="VIU37_07555"
                     /inference="COORDINATES: protein motif:HMM:NF013242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013845.1"
                     /translation="AEIARLLRRKSAILVAFGSCANEGCIPGLANLTAKADLLDLVYE
                     GPSMDNPGHVRPQSRTSVPEGELRLPALGTLLQTLDQVVDVDYRMPGCPPETERIADV
                     LGLLGAALDGKATLPPRGSVVGAGDSTVCDECRRDRGIKRIGQFGRLHELPTLDPSLC
                     LLEQGVPCNGPATRSGCVARCPLAGAPCIGCYGPAEGVVDFGARLLSAFASVVDADDA
                     AEIDRILDGLPDPVGQFYRFSLAGSLLRGSRAVRTAEAAPAPVPAMAMATSGAER"
     gene            819..>1585
                     /locus_tag="VIU37_07560"
     CDS             819..>1585
                     /locus_tag="VIU37_07560"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEY6013846.1"
                     /translation="MTRLTIDPITRLEGHGKIEIFLDDRGDVERTYFQVPELRGFEAF
                     CVGRPVEEMPTLTNRICGVCPEAHHLAAAKAADAVYGVDPPRPAKLLRELLYCAFYVT
                     DHTTHFYALGGPDVILGPDAPVVDRNILGVIRKVGLEFGSRVIDTRRGGHRVIELIGG
                     RRIHPCTAVPGGQTKGITADERDEIEAIGRPMLDFAGASIDVFDKVMSDGPTRDLVLG
                     DLFRHETYYAGMVDEGGRVALYDGRISVVAPDGESLGT"
BASE COUNT          221 a          563 c          578 g          223 t
ORIGIN      
        1 gccgagatcg cccgcctcct gcgacgcaag tcggcgatcc tggtcgcgtt cggctcgtgc
       61 gccaacgaag gttgcatccc gggcctggcg aacctgaccg cgaaggcgga cctgctcgat
      121 ctcgtctacg agggtccgag catggacaac cccggacacg tgcggccgca gagccggacc
      181 tcggtgcccg agggcgagct ccgcctgccg gccctcggca ccctgctgca gacgctggac
      241 caggtcgtcg acgtggacta ccggatgccg ggctgcccgc cggagaccga gcggatcgcc
      301 gacgtcctcg ggttgctcgg tgccgcactg gacgggaagg cgaccctgcc gcctcgcggg
      361 tcggtggtgg gcgccgggga ctccaccgtg tgcgacgagt gccgccgtga tcgcgggatc
      421 aagcggatcg gccaattcgg ccggctccac gagcttccga cgctcgaccc gagcctctgc
      481 ctgctcgagc agggggtccc gtgcaacggc ccggcgacgc ggagcggctg cgtcgcgcgc
      541 tgcccgctgg ccggcgcccc gtgcatcggc tgctacggcc cggccgaggg cgtcgtcgat
      601 ttcggggcgc ggctgctgtc cgcgttcgcg tcggtcgtcg atgccgacga cgcggccgag
      661 atcgaccgga tcctcgacgg cctgcccgac ccggtcggcc agttctatcg gttcagcctg
      721 gccgggtcgc tgttgcgcgg gagccgcgcg gtccgcaccg ccgaggcagc tccggcgccc
      781 gtccccgcga tggcgatggc gacctcggga gccgaacgat gacgcgcctg acgatcgacc
      841 cgatcacccg gctggagggc cacgggaaga tcgagatctt cctcgacgac cggggcgacg
      901 tcgaacggac ctacttccag gtccccgagc tgcgcgggtt cgaggcgttc tgcgtgggcc
      961 gcccggtcga ggagatgccg acgctgacga accggatctg cggcgtctgc ccggaagcgc
     1021 accacctggc cgcggccaag gcggccgacg ccgtctacgg agtcgacccg ccgcgcccgg
     1081 ccaagctgct ccgagagctg ctctactgcg cgttctacgt caccgaccac accacccact
     1141 tctacgcgtt gggtggcccg gacgtgatcc tgggcccgga tgcgccggtc gtcgaccgca
     1201 acatcctggg cgtcatccgc aaggtggggc tcgaattcgg cagccgggtg atcgacacgc
     1261 ggcgcggcgg tcatcgcgtg atcgagctga tcgggggccg gcggatccac ccgtgcacgg
     1321 cggtgccggg cgggcagacc aaggggatca ccgcggacga gcgcgacgag atcgaggcga
     1381 tcggccggcc catgctcgac ttcgcaggcg ccagcatcga cgtcttcgac aaggtcatga
     1441 gcgacggccc cacccgcgat ctcgtgctgg gcgacctgtt ccgccacgag acgtattacg
     1501 cggggatggt cgacgagggc ggccgggtgg cgctctacga cggccggatc agcgtggtgg
     1561 cgccggacgg cgaatcgctc gggac
//
LOCUS       DATDDI010000527         1725 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_365390, whole genome shotgun sequence.
ACCESSION   DATDDI010000527 DATDDI010000000
VERSION     DATDDI010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365390"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VIU37_07565"
     CDS             complement(<1..299)
                     /locus_tag="VIU37_07565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013847.1"
                     /translation="MNARDARPDELAGWDAATVESPGGHVYQSMAWAEHRRASGWSPR
                     LLVTDDGGRVLALTRPWRWVPGRSAYVPRGPVPGGTPATPGSLAERQIAVSEALAR"
     gene            complement(296..1354)
                     /locus_tag="VIU37_07570"
     CDS             complement(296..1354)
                     /locus_tag="VIU37_07570"
                     /inference="COORDINATES: protein motif:HMM:NF014445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016755 - aminoacyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0044038 - cell wall macromolecule
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan bridge formation glycyltransferase
                     FemA/FemB family protein"
                     /protein_id="HEY6013848.1"
                     /translation="MTTADPEAWDQFVETSDPGSYLQLSAWAGVKAANGWSAHRIAVP
                     SGAGQVGAQILVRRPGPMPWAFAYAPRGPVAAGWDRTAIAEFTDAIRTALPPAAGRVS
                     HLRVDPEIEADGPHDEAGALRDALRAAGWRPAPPIQPAATRIVDLRADEAALWGELRK
                     KWRQYVNKARTAGVEVVDGDAARLPEFYRIYRETASRAGFLIRTEAAYRDVWNAFAPA
                     GRARLLFAQLPDGEPVATLFLLRCGPRVVEPYGGMTAVGGETRANYLLKWEAIRSSQA
                     AGAASYDLWGLATGGIAHFKTGFGGREVRYIGAWDLVLDPLGRTVYGAAQRGRVWWAR
                     RRHGLSAGGNAAAYGPAD"
     gene            complement(1351..>1725)
                     /locus_tag="VIU37_07575"
     CDS             complement(1351..>1725)
                     /locus_tag="VIU37_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013849.1"
                     /translation="ALVGPLGLGGIALAIAVAAWLEAIALIVVLRARVEHLRLQGLGR
                     VTVEASAGSIVAGLIAIGVVALAEQVLGVAPSRPALIGESIVVTIAFGLAFAAVSLVL
                     RIPELASIVEVVVDVFRRPFRT"
BASE COUNT          235 a          661 c          634 g          195 t
ORIGIN      
        1 cgcgccaggg cctcgctcac cgcgatctgg cgttcggcga ggctcccggg cgtcgccggt
       61 gtgccgcccg ggacgggtcc gcggggaacg taggcgctcc tcccgggaac ccatcgccag
      121 gggcgggtca gggccagcac ccggccgccg tcgtcggtca cgagaaggcg cggcgaccag
      181 cccgacgcgc ggcggtgctc ggcccatgcc atcgactggt agacgtggcc gccgggtgac
      241 tcgaccgtcg ccgcgtccca accggccagc tcgtcggggc gcgcgtcgcg ggcgttcaat
      301 cggccggacc gtaggcggcg gcgttgccac cggccgacag gccatgccgc cggcgcgccc
      361 accagacccg accccgttgg gccgcgccgt agaccgtccg cccgagcggg tccaggacca
      421 ggtcccaggc gccgatgtag cggacctcgc gcccgccgaa cccggtcttg aagtgggcga
      481 ttcccccggt cgccaggccc cacaggtcgt agctcgcggc acccgccgcc tgcgagctgc
      541 ggatcgcctc ccacttcagc aggtagttgg cccgggtctc cccgccgacg gcggtcatcc
      601 cgccgtacgg ctcgacgacg cgcggcccgc agcgcagcag gaagagcgtc gccacgggct
      661 cgccgtccgg gagctgcgcg aacaggaggc gggctcgtcc cgcgggcgcg aaggcgttcc
      721 acacgtcgcg gtaggcggcc tccgtccgga tcaggaaccc cgcccgggac gcggtctcgc
      781 ggtagatccg gtagaactcg ggcagacggg cggcgtcgcc gtcgaccacc tcgaccccgg
      841 cggtcctggc cttgttgacg tactggcgcc acttcttgcg cagctcgccc cacagggcgg
      901 cctcgtcggc ccgcaggtcg acgatccgcg tggccgcggg ctggatgggt ggcgcgggcc
      961 gccagccggc ggcacgcagc gcgtcgcgca gcgcgccggc ctcgtcgtgg ggcccgtcgg
     1021 cctcgatctc cgggtctacc cggaggtgcg agacccggcc ggcggccggc ggcagcgccg
     1081 tccggatggc atcggtgaac tcggcgatgg ccgttcggtc ccagcccgcg gcgaccggtc
     1141 cccggggggc gtaggcgaag gcccacggca tcggtccggg gcggcgcacg aggatctggg
     1201 cgccgacctg tccggctccc gacgggaccg cgatgcgatg cgcggaccag ccgttggcgg
     1261 ccttgacccc cgcccacgcg ctcagctgca ggtaggagcc cgggtcactc gtctcgacga
     1321 actggtccca cgcctcagga tccgcggtcg tcacgttcga aacgggcggc ggaagacgtc
     1381 gaccacgacc tcgacgatag acgccagctc ggggatccgc aacaccagcg agaccgcggc
     1441 gaaggccaat ccgaaggcga tcgtcaccac gatgctctcg ccgatcagcg caggccgcga
     1501 aggcgcgacc ccgaggacct gctccgcgag cgccaccacg ccgatcgcga tcaggccggc
     1561 cacgatggac ccggcggacg cttcgacggt cacccggccg aggccctgca ggcgaaggtg
     1621 ctcgacgcgg gcgcgcagga ccacgatcag ggcgatggcc tccagccagg ccgcgaccgc
     1681 gatcgccagg gcgatgccgc ccagcccgag cgggccgacc agcgc
//
LOCUS       DATDDI010000528         1887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_94798, whole genome shotgun sequence.
ACCESSION   DATDDI010000528 DATDDI010000000
VERSION     DATDDI010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94798"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VIU37_07580"
     CDS             <1..458
                     /locus_tag="VIU37_07580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013850.1"
                     /translation="EPGRGEAGGPPPEVARARRAAVERGDPNAGLPTEWPGSRPTPTG
                     RRRSSIPVVEIARAEHKDAAMAGFERWKARHPEAAAALEPADVLVDSMRGRSTTWTRV
                     RVNLIHVPEADRPGQEPLEVDYDPWAGYEWPDRPGQLERAPRRKKTDPA"
     gene            455..1108
                     /locus_tag="VIU37_07585"
     CDS             455..1108
                     /locus_tag="VIU37_07585"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6013851.1"
                     /translation="MTAKDWLEWHTAYDDADAPLHHRLLAVQRRIRDWLDQRPPGPIR
                     VVSMCAGEGRDLLEVLADHSRAGDVHGRLVELNPELAARATALAPPGITVEVADAGST
                     DAYLGAVPADLVLACGIFGHIGDDDIRRTVRALPALCAPGAGVIWTRHRRPPDLTVDI
                     RRWFAEAGFEPVAFDGPAAFEWSVGVQRYVGEPVALEAGRRLFTFLDHSDAGGGAPR"
     gene            complement(1165..>1887)
                     /locus_tag="VIU37_07590"
     CDS             complement(1165..>1887)
                     /locus_tag="VIU37_07590"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6013852.1"
                     /translation="LGIPFLTEKPLAADDAAGPIRLATAIDRAGLVVAVGYHLRGLDF
                     IDLLRERLAERPPHLVVARWLAETPPPAWWSRVDRGGGQVVEQATHLYDLARCLVGEA
                     EVVGAASVPRSDPERGRSGGDVADATAAVLRFERGAVGSFSSAHRLRSASIEMTFASD
                     GLLARLWKEPTGQGDWHLTFDDGSEVRAARNQGDPYERQARAFLDAVEAADPAIALST
                     YADALRTDTLTRAVVAATGRSG"
BASE COUNT          265 a          686 c          696 g          240 t
ORIGIN      
        1 acgaaccagg ccggggcgag gccggcggcc cgccacccga ggtcgcgagg gcacgccggg
       61 cggcggtcga acggggcgat ccgaatgccg gcctcccgac ggagtggccg ggctcgcggc
      121 ccacgccgac gggccggcgc cggtcgtcga tcccggtcgt cgagatcgcc cgtgccgagc
      181 acaaggacgc ggcgatggcc gggttcgagc ggtggaaggc acgccaccct gaggccgcgg
      241 ccgcgctcga gccagccgac gtgctggtcg attcgatgcg cggccggtcc acgacctgga
      301 cccgtgtccg ggtcaacctg atccacgtcc cggaggccga ccggccgggc caggagccgc
      361 tcgaggtcga ctacgacccg tgggccggct acgagtggcc ggaccggccg ggacagctgg
      421 agcgcgcgcc ccgcaggaag aagaccgatc ccgcgtgacc gcgaaggact ggctggagtg
      481 gcataccgca tacgacgacg cggatgcgcc gctccatcac cggttgctag ctgtccagcg
      541 gcggatccgc gactggctgg accagcgacc acccggcccg atccgcgtcg tgagcatgtg
      601 cgccggtgag ggccgtgacc tcctcgaggt gctcgccgat cactcgcggg cgggcgacgt
      661 ccatggccgg ctcgtggagc tcaatcccga gctggccgcc cgagccaccg cactggctcc
      721 gccgggcatc accgtcgagg tcgccgacgc gggatcgacc gatgcgtacc ttggggccgt
      781 gccggccgat ctcgtcctcg cctgtggcat cttcgggcac atcggcgacg acgacatccg
      841 gcgcaccgtg cgggcactgc cggccctctg cgcgccggga gccggcgtga tctggacgag
      901 acaccggcgt cccccggacc tcacggtcga catccggcga tggttcgccg aggcgggctt
      961 cgaaccggtc gcgttcgacg gaccggcggc cttcgagtgg agcgtcggag tccagcgcta
     1021 cgtcggcgaa cccgtggcgc tcgaggccgg tcggcggctc ttcaccttcc tcgatcactc
     1081 ggacgcggga ggcggcgctc ctcgctgacg gcgcggcccg ggctgagaac acgccgcagc
     1141 cgccgagatg cacggtcctc caggtcagcc cgagcgtcca gtggccgcga ccacggcgcg
     1201 cgtcagcgta tccgtccgca gcgcgtcggc ataggtggat agcgcgatcg ccgggtcggc
     1261 ggcttccacc gcatcgagga atgcccgggc ctggcgctcg tagggatcgc cctggtttcg
     1321 cgcggcgcgc acctcgctcc cgtcgtcgaa cgtcaggtgc caatcgccct ggccggtcgg
     1381 ttccttccac agcctggcga gcaacccgtc cgaggcgaac gtcatctcga tcgacgcgga
     1441 ccgcaggcga tgcgcgctcg agaacgaccc gaccgcgccg cgttcgaagc gaaggaccgc
     1501 cgcggtggca tcggccacgt cgccgcccga acggccgcgt tcgggatccg agcgcggtac
     1561 ggatgccgcc cccacgacct cggcctcgcc gacgaggcag cgcgcgaggt cgtagaggtg
     1621 cgtcgcctgt tcgacgacct ggccgccccc tcgatcgacg cggctccacc acgccggagg
     1681 cggcgtctcg gcaagccagc gggcgacgac gaggtgcggg ggtcgttctg ccaggcgctc
     1741 gcggagcagg tcgatgaagt cgaggccgcg gaggtggtat ccgaccgcga cgaccagccc
     1801 ggctcgatcg atcgcggtcg cgagccggat cggaccggcg gcgtcgtcgg cggccagcgg
     1861 cttctccgtg aggaacggga tcccgag
//
LOCUS       DATDDI010000529         3328 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_365490, whole genome shotgun sequence.
ACCESSION   DATDDI010000529 DATDDI010000000
VERSION     DATDDI010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365490"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1807
                     /locus_tag="VIU37_07595"
     CDS             <1..1807
                     /locus_tag="VIU37_07595"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6013853.1"
                     /translation="PVVAEAVPELEPAEPVVAEAVPELEPEPEPESAAPAAAEPAPEP
                     ASEPVHGPRTVGRFVADALRTAGVRYAFTVPGESFLGLLDAFEGAGIRVIAAHHEGPA
                     SFMAEAHGQLTGRPAVSLGTRAVGGANLAIGIHTARQNSTPMFVAVGQVERPFLGREA
                     FQEIDQVATLGGLAKWAAEPHSVADVVPAVSEAIRQALGGRPGPAFLSLPEDLLDEPM
                     PDDARLEGTRPAAPRASDEGIRAVIELLASARRPVILAGAGILRARTSTELTRFAELL
                     QVPVIADWRRPDVISNDHPLYLGMAGLWAARTVRERLDAADALVVIGSRLNEATTYGY
                     TVPREGLRWAHVDLEPGRANGVPAPELAVAADAKAFLRAANERLVGRAVLDAERVRTR
                     QANNEADRAAWEAASVVDDRAWDGPGVHPGRTVSTLRRVLPDDAILTTDAGNFGGWAA
                     RGFRFRRPGTFLGSTSGAMGYGLPAAITAALVHRDRAVVALVGDGGLAMTMAELETSV
                     RVGARVVVLVHDNEQYGTIRMWQERRGTGIGVGTELGPMEFAAIARACGARGARVERD
                     ADLEPALRAALAADRSTVIHLTVDRRWVSVDQPPE"
     gene            complement(1845..2633)
                     /locus_tag="VIU37_07600"
     CDS             complement(1845..2633)
                     /locus_tag="VIU37_07600"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6013854.1"
                     /translation="MHRANRAAWDEAAERYEGWLADAIAEIRSGGSNLFGAEIELIGD
                     LHGRCRRAIHLQCAAGRDTLALWNLGAEEVIGVDFSPRMLELAARLTEATGAAARWVQ
                     SDVLDTPHELDGTADLVYTGRGSLIWLQDLDAWAAVIARLLARDGRLVLFEGHPAEWL
                     FDADENGHWIATDYDYFGGPEASKGWAPEYIERLSLDDAEQSWKFARAWTLGEIISAL
                     LGAGLRLERVAEYPIDWWGGHGDVRPEERGRVPLSFSIVGRRWP"
     gene            complement(2731..>3328)
                     /locus_tag="VIU37_07605"
     CDS             complement(2731..>3328)
                     /locus_tag="VIU37_07605"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY6013855.1"
                     /translation="ALLTPSVNNGRALGDRLSFGPMGVTVDGVAVRLRDVTPGDADLL
                     DRWSAPEFKGPFNDFGIPRAPVDRDALARGPMRNERNGQLIVERLADGEPIGTVSWHL
                     ERYGPNDESGAWNVGIALIPDARGHGYGTEAQRLVADFLFATTNLHRVEASTDVENLA
                     EQRSLEKAGFIREAVLRGVQYRAGAWHDLVNYARLRDD"
BASE COUNT          435 a         1222 c         1218 g          453 t
ORIGIN      
        1 gccggtcgtg gccgaggcgg tgcccgaact cgagccggcg gagccggtcg tggccgaggc
       61 ggtgcccgaa ctcgagcccg agcccgagcc ggaatccgcg gcacccgcgg cggccgagcc
      121 ggccccggag cctgcgtccg aacccgtgca cggcccccgg accgtcgggc gattcgtcgc
      181 cgacgccctg cgcacggccg gtgtccgcta tgccttcacc gtgcccggcg agtcgttcct
      241 gggcctgctc gacgcgttcg aaggcgccgg gatccgggtc atcgccgcgc atcacgaagg
      301 cccggcgtcg ttcatggccg aggcgcatgg gcagctgacc ggccggcccg cggtctccct
      361 cgggacgcgc gccgtgggcg gcgcgaacct cgcgatcggg atccatacgg cgcgccagaa
      421 ctcgaccccg atgttcgtcg ccgtcgggca ggtcgagcgc ccgttcctcg ggcgcgaggc
      481 gttccaggag atcgaccagg tggccacgct cggcgggctg gcgaagtggg cggccgagcc
      541 gcactcggtc gccgacgtcg tgccggccgt gtcggaggcc atccggcagg cgctgggcgg
      601 acggccgggc ccggccttcc tgtccctgcc cgaggacctg ctcgacgaac cgatgcccga
      661 cgacgcgcgg ctcgagggca cgcggccggc cgcgccccgg gcctcggatg aggggattcg
      721 cgcggtcatc gagctgctgg cgtcggcacg ccggccggtc atcctggccg gtgcgggcat
      781 ccttcgtgcg cgcacgtcga ccgagctgac gcggttcgcg gagctgctcc aggtgccggt
      841 gatcgccgac tggcggcgcc cggacgtgat ctcgaacgac cacccgctgt acctcggcat
      901 ggccgggctg tgggcggcca ggacggtccg cgagcggctc gacgcggcgg acgcgctggt
      961 cgtcatcggc tcgcgcctca acgaggcgac gacctacggc tacaccgtgc cgcgcgaggg
     1021 cctccgctgg gcccacgtgg acctcgaacc cggccgcgcg aacggcgttc cggcgccgga
     1081 gctggcggta gcagccgacg ccaaggcgtt cctgcgagcg gcgaacgaac ggctcgtcgg
     1141 ccgcgcggtc ctcgacgccg agcgggtgcg aacgcgccag gcgaacaacg aggccgaccg
     1201 cgccgcgtgg gaggccgcga gcgtggtcga cgaccgagcc tgggacggac cgggtgtcca
     1261 tcccggccgg acggtctcga cgctgcggcg cgtgctcccg gacgacgcga tcctgacgac
     1321 cgacgccggg aacttcggtg gctgggccgc tcggggcttc aggttccggc gacccgggac
     1381 cttcctcggt tcgacgtcgg gcgcgatggg gtacggcctc ccggccgcga tcaccgccgc
     1441 gctcgtccac cgggaccgcg ccgtggtggc actggtcggc gatggcggcc tggctatgac
     1501 catggccgag ctcgagacgt ccgttcgtgt cggcgcgcgg gtcgtcgtcc tcgtccacga
     1561 caacgagcag tacggcacga tccggatgtg gcaggagcgg cgcggaacgg gaatcggcgt
     1621 cggcaccgag ctcgggccga tggagttcgc ggcgatcgcc cgggcctgcg gcgcccgcgg
     1681 ggcccgcgtc gagcgcgacg ccgatctcga gcctgccctg cgtgccgcgc tggccgccga
     1741 tcgttcgacg gtcatccacc tcaccgtgga ccgccgctgg gtatcggtcg accagccgcc
     1801 ggaatgaccg agaaccccgg cggcgtccgg ccgcgcggcc gaacctaggg ccagcgccgg
     1861 ccgacgatcg agaaggagag cgggacccgg ccccgttcct cggggcgcac gtcgccgtgc
     1921 ccgccccacc agtcgatcgg gtattccgca acgcgctcga gtcgcaatcc cgcccccagc
     1981 agggcggaga tgatctcgcc gagggtccag gcgcgggcga acttccagct ctgctcggcg
     2041 tcgtcgagcg acagccgctc gatgtactcg ggcgcccagc ccttcgaggc ttccggaccg
     2101 ccgaagtagt cgtagtccgt cgcgatccag tggccgttct cgtcggcgtc gaacagccac
     2161 tcggccggat gcccctcgaa caggacgagc cgtccgtccc gggcgagcag ccgggcgatc
     2221 acggcagccc acgcgtcgag atcctgcagc cagatcagcg agccccggcc cgtgtacacc
     2281 aggtccgccg tgccatcgag ctcgtgtggc gtgtcgagca cgtccgactg gacccatcgc
     2341 gccgccgcgc ccgtcgcctc ggtgaggcgg gccgccagct cgagcatccg cgggctgaag
     2401 tcgacgccga tcacttcctc ggcgcccagg ttccacaacg ccagcgtgtc gcggccggca
     2461 gcgcattgca ggtggatcgc ccgccggcag cggccgtgca gatccccgat cagctcgatc
     2521 tcggcaccga acaggttcga gccaccgctt cggatctcgg cgatcgcgtc tgccagccag
     2581 ccctcgtagc gctcggcggc ctcgtcccag gccgcccggt tggcgcggtg catcagccgt
     2641 gggtcggcgc gttcggccgg cgtcgccggg cggatcaggg gcgtgtcctc gtcagccaac
     2701 gtcggggctc ttgcggacgc cggcgaccac tcagtcgtcg cgaagccggg cgtagttgac
     2761 caggtcgtgc caggccccgg cccggtattg cacgccccgc aggacggcct cgcggatgaa
     2821 cccggccttc tcgagcgaac gctgctcggc caggttctcg acgtcggtgg aggcctcgac
     2881 ccggtggagg ttcgtggtgg cgaacaggaa gtccgcgacg agacgctgcg cctcggtgcc
     2941 gtaaccgtgg ccgcgtgcgt ccgggatcag ggcgatgccg acgttccagg cgcccgattc
     3001 atcgttggga ccgtagcgtt cgaggtgcca gctgaccgtt ccgatcggct cgccgtcggc
     3061 caggcgctcg acgatcagct ggccgttgcg ctcgttccgc atcggcccgc gcgccagggc
     3121 atcgcgatcg accggggctc gcgggatccc gaagtcgttg aacggcccct tgaactcggg
     3181 ggcggaccag cggtcgagca ggtcggcgtc gcccggcgtg acgtcgcgaa gccgtaccgc
     3241 cacgccgtcg accgtcacgc ccatcggccc gaacgatagc cgatcaccca gggcgcggcc
     3301 attgttgaca ctcggtgtca acaacgcg
//
LOCUS       DATDDI010000530         1781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_552976, whole genome shotgun sequence.
ACCESSION   DATDDI010000530 DATDDI010000000
VERSION     DATDDI010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552976"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1104
                     /gene="lysS"
                     /locus_tag="VIU37_07610"
     CDS             <1..1104
                     /gene="lysS"
                     /locus_tag="VIU37_07610"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0017101 - aminoacyl-tRNA synthetase
                     multienzyme complex [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEY6013856.1"
                     /translation="VGTTIVSKWDGERVYYECRADLVTWAHGCGTTGWISPFGGAAKL
                     PWNLEWAAQWSLFGVTIEPGGKDLSTAGGSRDRSDAIAREVFEREPPLNVPYEFLNIG
                     GRKMSTSKGRGAAAHSIAEVIPPEQLRFLFLRPRPNQAIEFDPEGTDAIPRLFDEFDR
                     FAAATAGREVKGELTPGFEATFRYALLDPEADVAAEASAFRPAFAHLALLLQIPGVDV
                     VARVEAEKGSPLSVHEREILDRRVAAARAWLDGYAPDAARLTVRHDALPDAAGGLDAE
                     QRRFLASLSTTARPGSPAGGDAWQTLIFAAAAAQELPARRAFEAIYLAFLGRPNGPRA
                     GWLLASLDASFVLGRLDEAAGAAIAGAAERGAS"
     gene            1101..>1781
                     /locus_tag="VIU37_07615"
     CDS             1101..>1781
                     /locus_tag="VIU37_07615"
                     /inference="COORDINATES: protein motif:HMM:NF014458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013857.1"
                     /translation="MSVGLQRLREDADAIRRGAVAKGEDAGLVDRALEHDANRRRLLA
                     EVEALKATRNSQSAEIGRLVKGGADPKSDAGVLELRRQSTEIGARVAELEPGIASLEA
                     ELDDLLLRIPNPPDPDIPIGGEEANVTIRTWGDRLPLDGGGWTRKPHWELGDALGILD
                     NARGAKIAGSGFPVYKGAGSALQRGLISWFLDVHTRENGMTEVWPPAVVNTASATGTG
                     QIPDKEDQM"
BASE COUNT          252 a          632 c          672 g          225 t
ORIGIN      
        1 gtcggcacga cgatcgtgtc gaaatgggat ggcgagcgcg tctactacga gtgccgggca
       61 gacctcgtga cctgggcgca cggctgcggc acgacgggct ggatcagccc attcggcggg
      121 gccgccaagc tgccctggaa cctggagtgg gccgcccagt ggtcgctgtt cggcgtgacg
      181 atcgagcccg gcggaaagga cctctcgacg gcgggcgggt cgcgcgaccg gagcgacgcg
      241 atcgcccgcg aggtgttcga gcgcgagccg ccgctcaacg tgccctacga gttcctcaac
      301 atcggcgggc ggaagatgtc gacctccaag ggccgaggcg cggccgcgca ctcgatcgcc
      361 gaggtcatcc cgccagaaca gctccggttc ctgttcctgc ggccgcgccc gaaccaggcc
      421 atcgagttcg atccggaagg gaccgacgcg atcccgcggc tgttcgacga gttcgaccgg
      481 ttcgccgccg ccaccgccgg ccgcgaggtc aagggcgagc tgacgccggg gttcgaggcg
      541 acgttccggt acgccctcct ggaccccgag gcggacgtcg cggccgaggc atcggccttc
      601 cgcccggcgt tcgcgcacct cgcgctcctg ctccagatcc cgggtgtcga cgtcgtcgcc
      661 cgcgtcgagg cggagaaggg gagtccgttg tccgtccatg agcgcgagat cctcgaccgg
      721 cgagtcgccg cggcgcgcgc ctggctcgac gggtacgcgc cggatgcagc gaggctgacc
      781 gtccggcacg acgcgctgcc cgacgccgcc ggtgggctcg acgcggagca gcgccggttc
      841 ctcgcgagcc tgtcgacgac ggcgaggccc gggtcgcccg cgggcggcga tgcctggcag
      901 acgctgatct tcgccgccgc ggccgcccag gagctgccgg cgcggcgggc gttcgaggcc
      961 atctacctcg cgttcctcgg tcgcccgaat ggcccccggg cgggctggct gctggcgagc
     1021 ctggacgcgt cgttcgtgct gggtcgcctg gacgaggccg ccggggccgc catcgccggg
     1081 gccgccgagc gaggtgcgtc atgagcgtgg gtctgcagcg gctccgcgag gacgcggacg
     1141 cgatccgccg cggcgcggtc gccaagggcg aggacgcggg gctggtcgac cgggcgctcg
     1201 agcacgacgc gaaccggcgg cggcttcttg ccgaggtcga ggcgctcaag gcgacccgaa
     1261 acagccagag cgccgagatc ggcaggctgg tcaaaggcgg cgcggatccg aagtccgacg
     1321 ccggcgtgct cgagctccgg cggcagtcga ccgagatcgg cgcccgggtt gccgaactgg
     1381 agcccgggat cgcctcgctc gaggccgagc tggacgatct cctcctgcgg atcccgaacc
     1441 cgcccgaccc cgacatcccg atcggcggcg aggaggccaa cgtcacgatc cggacgtggg
     1501 gcgaccggct gccgctcgac ggtggcggct ggacccgcaa gccccactgg gagctcggcg
     1561 acgcgctggg gatcctggac aacgcgcgtg gcgccaagat cgccggctcg ggcttcccgg
     1621 tctacaaggg cgcgggatcc gcgctccagc gcgggctgat cagctggttc ctcgacgtcc
     1681 acacccgcga gaacgggatg accgaggtct ggccgccggc ggtcgtcaac acggcgtcgg
     1741 ccaccgggac cggacagatc cccgacaagg aagaccagat g
//
LOCUS       DATDDI010000531         2460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_490412, whole genome shotgun sequence.
ACCESSION   DATDDI010000531 DATDDI010000000
VERSION     DATDDI010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490412"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..883)
                     /locus_tag="VIU37_07620"
     CDS             complement(179..883)
                     /locus_tag="VIU37_07620"
                     /inference="COORDINATES: protein motif:HMM:NF024248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013858.1"
                     /translation="MPNDPASIEAVALLEEPVRRALYEWVVRDGGAVSRDQAAAGVGV
                     SRALAAFHLDRLVEGGLLSPEYRRLSGRTGPGAGRPAKLYRRGPRQVTVSLPDRSYEV
                     AALLFADTIEGTQGEIPPAPLRVAARGLGRSAGARARKEAGPRPTRKRLRAGLMAALR
                     ERGYEPRESDGAGIRLGNCPFHALVEDHRQLVCGMNLALAEGMIDGLGDDRVTARLDP
                     QPGWCCVAIDTERPAH"
     gene            999..1676
                     /locus_tag="VIU37_07625"
     CDS             999..1676
                     /locus_tag="VIU37_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013859.1"
                     /translation="MTRIARLGVLGGLLIAGFVVLAAPSTPPAAEAAQGDMAHGAVGA
                     RAAFHDAMRKLWEDHIVWTRQYIVSAATEAGNLPDIGPTTDRLLANQTDIGNALKPFY
                     GDAAGNQVTALLRDHILTAAQLIAAAKAGDAAGVDAASAAWYANAHDIAVALNGLNPR
                     QWSLADLDAMMKDHLDLTLQEAVARLQGRYADDIVAYDQVHDEILSMADMLSDGIIAQ
                     FPNRFAH"
     gene            1740..>2460
                     /locus_tag="VIU37_07630"
     CDS             1740..>2460
                     /locus_tag="VIU37_07630"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013860.1"
                     /translation="MTDNGTIVIIGAGLTGAKAAEALRAEGYEGRIVLFGEEPLPPYL
                     RPPLSKEYLRGVADLAKLFVHPESWYAEHRIEHRPSSRVDRIEPATHEVVVDGGERVA
                     FDRLLIATGSEPRRLEIPGGDFDGVHYLRTVADADAIRAAAKAARRVVVIGGGWIGSE
                     VAASMRQLGLPVTLVIGGAVPLERVLGPEVGRVYRDLHLEQGVELVTGQPVVRLRGKR
                     AVQAVETADGTRVEGDLVVVGI"
BASE COUNT          365 a          883 c          872 g          340 t
ORIGIN      
        1 gacgatcgtc gagtggctga tcgtcatcgg tgtgctggcc ttcggcgcgc tgctgttcac
       61 cgcggcggcg tggtacctgc cgctcgagga gcatggggcg cacgccgcgg agcccgcgtt
      121 ggcgggagcg gaggcagccc gcgactgagc gccgacccga ggtccggcac gtcgccggtc
      181 agtgggcggg acgctccgtg tcgatcgcga cgcagcacca tcccggctgg gggtcgagcc
      241 gcgccgtgac gcgatcgtcg cccaggccgt cgatcatccc ctcggccaag gcgagattca
      301 tcccgcacac gagctggcgg tggtcctcca cgagcgcgtg gaacgggcag ttgcccaggc
      361 ggatcccggc gccgtccgac tcgcgcggct cgtatccgcg ctcgcggagg gccgccatga
      421 ggccggcccg gagccgcttg cgggttggcc gcgggcccgc ttccttgcgt gcccgtgccc
      481 cggccgatcg gccgagcccg cgagcggcga cgcggagcgg cgcgggcggg atctcgccct
      541 gggtcccctc gatcgtgtcc gcgaacagca gggccgccac ctcgtagctt cgatccggca
      601 gtgagaccgt cacctggcgg ggtccgcgcc ggtacagctt ggccgggcgg ccggcaccgg
      661 gtccggtccg cccagacagg cggcggtact cgggcgacag gaggcctccc tcgacgagcc
      721 ggtccagatg gaaggccgcc agggcgcgcg acacgcccac accggccgcc gcctggtcgc
      781 gactgaccgc gccgccgtcg cggacgaccc actcgtagag ggcccggcgg acgggctcct
      841 ccaggagggc gacggcttcg atgctggctg gatcgtttgg catgctccga attctaacgc
      901 aagtctccat ttgtgcaagg ccttgacggc cacgggcggt aaggagtatt actagcgcct
      961 actaacgtta gaaagcacaa gctagaaggg aacggatcat gactcgaatc gcccgtctcg
     1021 gagtcctcgg tgggctcctc atcgccggct tcgtcgttct tgcggcccct tcgacaccgc
     1081 cggccgccga ggcggcgcag ggcgacatgg cgcatggcgc cgtcggggcc cgcgccgcgt
     1141 tccacgacgc gatgcgcaag ctctgggagg accacatcgt ctggactcgc cagtacatcg
     1201 tcagcgcggc gaccgaagcc ggaaacctcc ccgacatcgg gccgacgacg gatcggctgc
     1261 tcgccaacca gaccgacatc ggcaacgcac tcaagccctt ctacggcgac gccgccggca
     1321 accaggtgac ggcgctcctg cgcgaccaca tcctgaccgc ggcgcagctt atcgccgcgg
     1381 ccaaggccgg cgatgccgcc ggtgtcgacg ccgcgtcggc agcctggtac gccaacgccc
     1441 acgacatcgc cgtcgccctc aacgggctca atccccgcca gtggtcgctg gccgacctcg
     1501 acgcgatgat gaaggaccac ctcgacctga ccctgcagga agccgtcgcc cggctccagg
     1561 gccgctacgc cgacgacatc gtcgcgtacg accaggtgca cgacgagatc ctgtccatgg
     1621 cggacatgct cagcgacggg atcatcgccc agttcccgaa ccggttcgct cactgatgcc
     1681 atgccggaga ggggcggcca acgtccctct ccggctccac ctcgaccagg agcgcaaaca
     1741 tgaccgacaa cgggacgatc gtgatcatcg gggcaggcct gaccggcgcc aaggccgccg
     1801 aagcgctccg ggcggagggc tacgagggcc ggatcgtgct gttcggcgag gagccgctgc
     1861 cgccctacct gcggccgccc ctgtcgaagg aatacctcag gggcgtagcc gacctggcca
     1921 agctgttcgt ccaccccgag tcctggtacg cggagcaccg gatcgagcac cgcccgtcga
     1981 gccgggtcga ccgaatcgag ccggccaccc acgaggtggt cgtggacggt ggcgagcgcg
     2041 tcgcgttcga ccggctgctg atcgcgaccg gctcggagcc gcgccggctc gagatcccgg
     2101 gcggcgactt cgacggcgtg cactacctgc gcacggtcgc tgacgccgac gcgatccgcg
     2161 ccgcagcgaa ggcggcgcgc cgggtcgtgg tcatcggagg tggctggatc ggctccgagg
     2221 tcgcggcgtc gatgcgccag ctcggcctcc cggtgacgct ggtcattggc ggggccgtcc
     2281 cgctcgagcg cgtgctcgga ccggaggtcg ggcgcgtgta ccgtgacctc cacctcgaac
     2341 aaggcgtcga gctggtcacc ggccagcctg tcgtgcgtct tcggggcaaa cgggccgtgc
     2401 aggccgtcga gacggcggac gggacccggg tcgagggcga cctcgtggtg gtcggcatcg
//
LOCUS       DATDDI010000532         2988 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_157444, whole genome shotgun sequence.
ACCESSION   DATDDI010000532 DATDDI010000000
VERSION     DATDDI010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157444"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..513
                     /locus_tag="VIU37_07635"
     CDS             223..513
                     /locus_tag="VIU37_07635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013861.1"
                     /translation="MAAKHQRFALHDVTFAGVSLPAATIDCCDDTHGRPQWLARVLVK
                     SRSQIEDGELSGHTADGRVLTGHVLVADQQVGPGGIKQTLIIFHGDGTLHGL"
     gene            540..665
                     /locus_tag="VIU37_07640"
     CDS             540..665
                     /locus_tag="VIU37_07640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013862.1"
                     /translation="MARKKDKKAQKDKKAARDEQARVDAKTAAASTGNRPPKTQA"
     gene            762..2528
                     /locus_tag="VIU37_07645"
     CDS             762..2528
                     /locus_tag="VIU37_07645"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY6013863.1"
                     /translation="MPDAAPNTHADPEALIELIRNSVIGDDEAVAGPFGIRRVTYADY
                     TASGRALTFVEDYLREAVLPLYANTHTESSGTGLQTSRFREDARTIIRDAVGANADDH
                     AVIFAGSGMTGAVNLLVGVLGLRIPSSLDDRYGLSARIPAHERPVVFIGPYEHHSNEL
                     PWRESIAQVITIGEDHDGRIDLARLESALDETDGRALRIGSFSAASNVTGILSDTRAI
                     SVLLHRHGALSFWDFAAAGPYVEIEMDPRRPGPDGESSDRDAELDYKDAIVLSPHKFI
                     GGPGTPGALVARRELFRNRVPASPGGGTVAYVNPLEHLYLADPERREEGGTPAIIESI
                     RAGLVFRLKEAVGVDAIRRREEDFIGRAMAAWSAEPAIGILGNPALPRLSIVSFTVRH
                     EGRYLHHNFVVAVLNDLFGIQSRGGCSCAGPYGHRLLGIDIETSHAFEREISRGCEGI
                     KPGWVRVNFNYFIGASVFDYIVRAVAMVARDGWRLLPWYRFEPATGMWRHAAGSPEPT
                     LFLHDVTFGPDGITYPAHRHRAGEEALAGYLRDAERILADPIAALGEPPEPAEPPLVG
                     DDFESLRWFWLPDEVRGAIGAR"
     gene            2553..>2988
                     /locus_tag="VIU37_07650"
     CDS             2553..>2988
                     /locus_tag="VIU37_07650"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013864.1"
                     /translation="MTHSDSVPRPASSIPAPPALSVSHLSKRFGDRLAFDDVSFEVGQ
                     GEVFGFLGPNGAGKTTTVRTLGTLIAPTSGSAMVAGLPLAPEHGVEIRRRISVMPESP
                     GLYLRLSVLENLECFADLYELPDPRDRVAGVLGAVKLADRARD"
BASE COUNT          453 a         1072 c         1022 g          441 t
ORIGIN      
        1 tctcgcctcc gtggcggcag cgcaggcgtc ggaggcggcg cagcaggtct acgccgacgc
       61 ccaggacgac gttgcgcgaa cgggcgagat cgcgcatgac gccgaagtgc tggaagtgga
      121 ggccggtgag gcattccgcg aggcccagaa acacgacttt gccaaggacc gcccgtagag
      181 accctgagcg gggtccccgt cgaaggggtg taccgtgatg gcatggcagc gaaacatcag
      241 cgcttcgccc tgcacgacgt gacgttcgcc ggcgtctcgt tgcccgccgc gacgatcgac
      301 tgctgtgatg acacgcacgg ccggccgcag tggctcgccc gcgttctcgt caagtcacgt
      361 tcccagatcg aggacggcga gctgtccggt cacaccgccg atgggcgcgt cctgacaggc
      421 cacgtgctgg tcgccgacca gcaggtcggt ccgggcggca tcaagcagac gctcatcatc
      481 ttccacggtg acgggacgct ccacggcttg tagaaaccgc tgcatcgaga gaggaaccga
      541 tggccaggaa gaaggacaag aaggcgcaga aggacaagaa ggccgccagg gacgagcagg
      601 cgcgggtcga cgccaagacg gccgccgctt cgaccgggaa tcgaccgccg aagacgcaag
      661 cctgagctcg ccggcctggc gaagagccgt caggcggggc gcaggagcaa gcacggcccg
      721 cgtcgcggcc cagccccgac ctcgcgctct accatgggat cgtgcctgac gccgcgccca
      781 acacgcacgc cgatccagag gccctgatcg agctgatccg caactcggtc atcggtgacg
      841 acgaggccgt cgccgggcca ttcggcattc gtcgcgtcac ctacgccgac tacaccgcct
      901 cgggccgcgc cctgacgttc gtcgaggact acctgcgcga ggccgtcctg ccgctgtacg
      961 ccaacaccca caccgagtcg tcggggacgg gcctccagac cagccggttc cgcgaggacg
     1021 ccaggacgat cattcgcgac gcggtgggtg ccaacgcgga cgaccacgcc gtgatctttg
     1081 ccgggtccgg catgaccggc gcggtcaatc tcctcgtcgg ggtcctcggg ctccggatcc
     1141 cgagctcgct cgacgatcgg tatggcctca gcgcgcggat cccggcccac gagcgcccgg
     1201 tcgtgttcat cgggccgtac gagcaccaca gcaacgagct gccctggcgc gagtcgatcg
     1261 cccaggtgat cacgatcggc gaggaccacg atggccggat cgacctcgcc aggctcgaat
     1321 ccgcgctgga cgagaccgac ggccgcgccc ttcggatcgg gtcgttctcg gcggcgtcga
     1381 acgtgaccgg gatcctgtcc gacacccggg cgatctcggt gctgctccac cgccacggcg
     1441 cgttgtcgtt ctgggacttc gccgccgccg gtccctacgt cgagatcgag atggacccgc
     1501 gccgacccgg cccggacggc gagtcgtcgg atcgcgatgc cgagctcgac tacaaggacg
     1561 ccatcgtcct cagtccgcac aagttcatcg gcgggcccgg aacgcccggc gccctcgtcg
     1621 cccgccgcga gctgttccgc aaccgcgtcc ctgcgtcacc ggggggcggg acggtcgcct
     1681 acgtcaaccc gctcgagcac ctctacctgg ccgacccgga gcgccgcgag gaggggggca
     1741 cgcccgcgat catcgaatcg atccgggccg gcctcgtctt tcgcctcaag gaggccgtcg
     1801 gcgtcgacgc catccgtcgc agggaggagg acttcatcgg gcgggcgatg gccgcctggt
     1861 cggccgagcc ggccatcggt atcctcggca accccgccct gccacggctg tcgatcgtgt
     1921 cgttcacggt ccgccacgag gggcgatacc tccaccacaa cttcgtggtc gcggtgctca
     1981 acgacctgtt cggcatccag tcgcgcggcg gctgctcgtg tgccgggccg tacggccacc
     2041 gcctgctcgg gatcgacatc gagacctcgc atgcattcga gcgcgagatc tcgcgtggct
     2101 gcgaggggat caagccgggc tgggtgcggg tgaacttcaa ctacttcatc ggcgcgtcgg
     2161 tcttcgacta catcgtccgc gcggtggcga tggtggcccg tgacggctgg cggctgctcc
     2221 cgtggtatcg gttcgagccg gcgaccggca tgtggcggca tgcggcgggc tcacccgagc
     2281 cgaccttgtt cctccacgac gtgacgttcg ggccggatgg gatcacgtat ccggctcatc
     2341 gccaccgggc gggggaggag gcgctcgccg ggtacctccg cgatgccgag cggattctcg
     2401 ccgacccgat cgcggccctc ggcgagccgc ccgagccggc ggagccgccg ctcgtcggcg
     2461 acgacttcga gtcgctccgc tggttctggc tgcccgacga ggttcgcggt gccatcggcg
     2521 cccgataggc gatcgacgct acgctggccg cgatgaccca ctcggacagc gtgccgcggc
     2581 ccgcctcgag catccccgcg ccgcccgccc tgtcggtcag ccacctctcg aagcgcttcg
     2641 gcgatcgcct cgccttcgat gacgtctcct tcgaggtggg acagggcgag gtcttcgggt
     2701 tcctcggtcc gaacggcgcc gggaagacga cgaccgtccg gacgctcggc acgctcatcg
     2761 ccccgacctc cggctcggcg atggtcgccg gtctgccgct ggcgcccgaa cacggcgtgg
     2821 agatccgccg ccggatctcg gtcatgccgg aatcgccggg cctgtacctc cgcctgagcg
     2881 tgctcgagaa tctcgaatgc ttcgcggatc tgtacgagct gccggaccct cgcgaccgcg
     2941 tcgccggcgt actgggcgcg gtgaagctgg ccgaccgggc ccgcgacc
//
LOCUS       DATDDI010000533         1679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_365550, whole genome shotgun sequence.
ACCESSION   DATDDI010000533 DATDDI010000000
VERSION     DATDDI010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365550"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            448..1137
                     /locus_tag="VIU37_07655"
     CDS             448..1137
                     /locus_tag="VIU37_07655"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEY6013865.1"
                     /translation="MTAGFGLIGIVIIGVLLVMQGTAPKSIDTSNIKASVVQVPVDLA
                     DGRTLGKADAPVTLDVWSDYQCPVCGQFAELVEPSLIRTYVTGGTLRIVDHDAAFQGQ
                     RSSSSFDESVEAAAGARCAVDQGQYWQFHNLLFANQIGENQGAFSDERLRAIATKAGL
                     DVKAWDACRATGEQQAAVRAETAAAVKAGVNATPTMSINGQVVVGLRSAAELGAMIEA
                     AAAGNPVPSPS"
     gene            1134..1610
                     /locus_tag="VIU37_07660"
     CDS             1134..1610
                     /locus_tag="VIU37_07660"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HEY6013866.1"
                     /translation="MSILTQRAPARRLFGVHPGLILAILDVCGLLIATYLSVVELGGG
                     TPVCGPIKGCEEVALSEYSRIGGIPVAVYGVGLSIILLSFAIAWWKTDLYGLLLAHYG
                     LSLAGVIFELYFLYLQLFVIHAVCVWCTSYGLSLILRFVVAFIVWLRQPPPERTAG"
BASE COUNT          227 a          599 c          593 g          260 t
ORIGIN      
        1 gccgccgtga agtggccatc ctggtcggcg atcagcgcgg ccagcgcctg tcgcggcccc
       61 gtcaggcggt agccggcgcg gtcgagggcg gtcgtgatcg gtgtcggcgt tcccacggcc
      121 ggagcgtacc atgaatgaga cagagtctca ataccttcgc cgaggatccc ggcgccggtc
      181 caaagggccc ggcgccttcg ggccggtcgg cactgccttg ccccgggtgc ccgtcgcgat
      241 gctggttcac gcgtccatgc gtccggctgc ctcgcaacgg gcggcccatg agacggaccc
      301 aggagaacca cgttgaccag caggacagac gccccggccc cgccgagccg acacgaacgc
      361 cgcctcgccg aacgggcaac tcgggcgaac ggcaccggcc gccgttccgc cgacagccct
      421 cgacgcggtg cctcgccgct gatctgggtg accgcggggt tcggcctcat cgggatcgtg
      481 atcatcggcg tgctcctggt catgcagggc acggccccga agtccatcga cacctcgaac
      541 atcaaggcgt cggtcgtcca ggttccggtc gatctcgccg acgggcggac gctcggcaag
      601 gcggacgcgc cggtgaccct cgacgtgtgg tcggactacc agtgtccggt ctgcggccag
      661 ttcgccgagc tggtcgagcc gagcctcatc cgcacgtacg tgacgggcgg gacgctgcgg
      721 atcgtcgacc acgacgctgc cttccagggc cagcgatcgt cgtcgtcgtt cgacgagtcg
      781 gtcgaggccg ccgcaggcgc gcgctgcgcc gtcgaccagg ggcagtactg gcagttccac
      841 aacctgctgt tcgcgaacca gatcggcgag aaccagggcg ccttcagtga cgagcggctg
      901 cgcgcgatcg cgaccaaggc cggtctcgac gtcaaggcct gggacgcctg ccgggcgacc
      961 ggcgagcagc aggccgccgt tcgagccgag acggccgcgg ccgtcaaggc cggggtcaac
     1021 gcgacgccca ccatgagcat caacggacag gtcgtcgtcg ggctccgcag cgccgccgaa
     1081 ttgggggcga tgatcgaagc ggcggcggcc ggcaatccgg taccctcgcc gtcgtgagca
     1141 tcctgaccca gcgcgctccc gcgcggcgcc tgttcggcgt ccacccgggt ctcatcctcg
     1201 cgatcctgga cgtctgcggg ctgctcatcg ccacctacct gtcggtggtc gagctcggtg
     1261 gcgggacgcc ggtctgcggc ccgatcaagg gctgcgagga ggtcgccctc agcgagtaca
     1321 gccggatcgg cgggatcccc gtggcggtct acggcgtggg gctgtcgatc atcctcctgt
     1381 ccttcgccat cgcctggtgg aagaccgacc tctacgggct gttgctcgcg cactacggcc
     1441 tgtcgctggc cggcgtgatc ttcgagctgt acttcctcta cctgcagctg ttcgtgatcc
     1501 acgcggtgtg cgtctggtgc acgtcgtacg ggctgtcgct gatcctgcgg ttcgtcgtcg
     1561 cgttcatcgt ctggctccgc cagccgccgc ccgagcgtac ggcgggctag ccgagtcggc
     1621 cgccggtcag gccggcggcg caccgccgac ggcgggcatc gccgggcccg cgcggccgg
//
LOCUS       DATDDI010000534         2381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_344680, whole genome shotgun sequence.
ACCESSION   DATDDI010000534 DATDDI010000000
VERSION     DATDDI010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344680"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /locus_tag="VIU37_07665"
     CDS             complement(<1..1205)
                     /locus_tag="VIU37_07665"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6013867.1"
                     /translation="MSAPAPWDPCLAPVDRPALAGGRRIRVVEVLATGTNGGAQEHLY
                     SLVTRIDTERYEVSVVALSAGSAVRKLAKAGIDVLVIDDPDDTIAVGALAAHLAEVRA
                     DVVHAHMYRAETVATRAVIALGEAGQRKPYLVATIHSSRIRSLEDQEHLRALTPYMDR
                     LIAVSRAIEHKLCDEQRTTVPVSLIYNGVDLERYDHQEACCTLPEEYGMEPGSAIVGV
                     VARLEPEKGHPTLLEAWPLVLRACPDTYLLIVGEGSRRDALEAQARELRIAHRVVFTG
                     RRDDVPAVTAALDVAVLPSYREAQGMVILEAMALSRPVVASNVGGIPEMIGDGVTGLL
                     VPPRDPDALAAAIVRLLTNHPLADTIGRAGHDMVHDRFCIELMVDAIQSIYDEGARLT
                     RPSEVVAAG"
     gene            complement(1213..>2381)
                     /locus_tag="VIU37_07670"
     CDS             complement(1213..>2381)
                     /locus_tag="VIU37_07670"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013868.1"
                     /translation="EPPCPVPATTEAAPSRSTTEPLHTERRNVRDIGREAWDRIAAKT
                     PWATPFSGWAFQRAWWDAYGDNAHEETLVVCADWPGGEPIAIVPLMHRHEVEPTDALT
                     HTTMRHEAGAELTPVEPTATAVFFGASYHADYATVLGAPADLPAVAAALVDHFAGTRD
                     GQPWDAIDLRRLRCGDPAADALAAAFGAREIAEGWTLNVEREDVCPVVHLPAGITMDD
                     YLGTLGKKERHEIRRKVRRAEAAGEVRLEDSLDPVGDLDEFIDLHQKKWGAAGLFPET
                     PGGEQSRVFFRRMFELADAEGPRLTFLTVGGRRIAAGVHFETADGYLYYNAGVDPDAR
                     ELSPGVVMIHALTERALAAGKRRLDFMRGNEPYKYEWGAEDEPIQRILVRRRNG"
BASE COUNT          319 a          867 c          856 g          339 t
ORIGIN      
        1 tacccggcgg cgaccacctc ggacgggcgc gtgagccgcg cgccctcgtc gtagatcgac
       61 tggatcgcgt ccaccatgag ctcgatgcag aagcggtcgt ggaccatgtc gtggccggcg
      121 cggccgatcg tgtcagccag cgggtggttc gtgaggagcc gcacgatcgc ggcggccagt
      181 gcgtctggat cgcggggcgg cacgagcagc cccgtcaccc cgtctccgat catctcgggg
      241 atcccgccga cgttggacgc gacgaccggc cgcgagagcg ccatcgcctc gaggatgacc
      301 atcccctggg cctcgcggta ggacggcagc accgccacgt cgagcgcggc ggtgaccgcg
      361 ggcacgtcgt cgcgccggcc ggtgaacacg acgcggtgcg cgatccggag ctcgcgggcc
      421 tgggcctcga gcgcgtcgcg gcgactgccc tcgcccacga tcagcaggta ggtgtccggg
      481 cacgcacgca ggaccagcgg ccaggcctcc agcagcgtcg ggtgtccctt ctccggttcg
      541 agccgcgcga ccacccccac gatcgccgac ccgggctcca tcccgtactc ctcggggagc
      601 gtgcagcatg cctcctggtg gtcgtaccgc tccaggtcga cgccgttgta gatcaggctc
      661 accggaacgg tcgtccgctg ctcgtcgcac agcttgtgct cgatcgcccg ggacacagcg
      721 atcagccggt ccatgtacgg cgtcaacgca cgcaaatgct cctggtcttc gagcgaccgg
      781 atccggctcg aatggatcgt cgccacgaga tacggcttgc gctggccggc ctcgccgagc
      841 gcgatgaccg cccgggtcgc aacggtctcg gcccggtaca tgtgcgcgtg gacgacgtcg
      901 gcgcggacct cggccaggtg cgcggcgagc gccccgaccg cgatggtgtc gtcggggtcg
      961 tcgatgacga gcacgtcgat gccggccttc gccagcttgc gcacggcgct gcccgccgac
     1021 agcgccacga ccgagacctc gtagcgctcg gtgtcgatcc gggtgaccag ggagtacagg
     1081 tgctcctggg cgccgccgtt ggtgccggtc gcgagcacct cgaccacccg gatccgccgg
     1141 ccgccggcga gcgccggccg gtcgacgggc gcgaggcacg gatcccaggg agcgggcgcg
     1201 ctcatcgaag cctcagccgt tccgccgccg gacgaggatg cgctggatcg gctcgtcctc
     1261 ggcaccccac tcgtacttgt agggctcgtt gccgcgcatg aagtccaggc gtcgcttgcc
     1321 cgcggcgagg gcgcgctcgg tcagcgcatg gatcatgacc acgccgggcg acagctcccg
     1381 cgcatccggg tcgacaccgg cgttgtagta caggtacccg tccgcggtct cgaaatggac
     1441 gcccgccgcg atccgccggc cgccgacggt caggaacgtc aagcgtgggc cctcggcgtc
     1501 cgcgagctcg aacatccggc ggaagaagac ccggctctgc tcgccgcccg gcgtctccgg
     1561 gaagaggccc gcggctcccc acttcttctg gtgcaggtcg atgaactcgt cgaggtcgcc
     1621 gaccgggtcg agcgaatcct ccagccgcac ctcgccggcg gcctccgcgc ggcggacctt
     1681 gcgacggatc tcgtggcgct ccttcttgcc gagcgtcccc aggtagtcgt ccatcgtgat
     1741 gccggccggc aggtggacga ccggacagac gtcctcgcgc tccacgttga gcgtccagcc
     1801 ctcggcgatc tcgcgagccc cgaaggccgc ggccagcgcg tccgcggccg ggtcgccgca
     1861 gcgcagccgg cggaggtcga tcgcatccca gggctggccg tcgcgggtgc cggcgaaatg
     1921 gtcgacgagg gcggcggcga ccgccggcag gtccgccggc gcaccgagca cggtcgcgta
     1981 gtcggcgtga tacgaggcac cgaagaagac ggccgtcgcg gtcggctcga ccggcgtgag
     2041 ctcggcgccg gcctcgtgcc gcatcgtcgt gtgggtcagt gcgtcggtcg gttccacctc
     2101 atggcggtgc atgagcggca cgatcgcgat cggctccccg cccggccagt cggcgcagac
     2161 gacgagcgtc tcctcatggg cgttgtcgcc gtacgcgtcc caccaggcgc gctggaaggc
     2221 ccagccggag aacggggtcg cccacggggt cttggcggcg atgcgatccc aggcctcccg
     2281 gccgatgtcg cgcacgttcc ggcgctcggt atggagcggc tccgtcgtcg accggctcgg
     2341 cgccgcttcc gtcgtggccg ggaccggaca cgggggctcc g
//
LOCUS       DATDDI010000535         2048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_365614, whole genome shotgun sequence.
ACCESSION   DATDDI010000535 DATDDI010000000
VERSION     DATDDI010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365614"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1441
                     /locus_tag="VIU37_07675"
     CDS             <1..1441
                     /locus_tag="VIU37_07675"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6013869.1"
                     /translation="SVRQGAKEVTLVYRRDMKDMPASNEVHEAIEEGVTAIFQAGPVR
                     VITDDAGKVTGVEFIRMALGAPDASGRRRPEPAPGTEFTIPCDRVLLAIGQGPDLTWI
                     GPGSEGPEATKQRRLKADAVTFETGRPGVFGTGDVRIGAATVVQAIAEGRRSAYAVDA
                     YLKGNDLSAIRTRQTLAEPQPEFLSIVPFTSEVKTPRYRMTALEAEERNHSYIEYELP
                     YTREEAVAESTRCLQCTCEAIGFCDLRRLGIEYGTTLKTLEPQYHAGAGYRSVTENRF
                     TGVNHDYIRDDSHAFILREPSRCIDCGRCANVCAEVVGAACYDFMRIGFDTLVTTPLD
                     MSLNDTPCVSCGRCAETCPTGALMPKPRILQKYDVDESRCILCGICVDACPYDALRDG
                     ADIELAHTSRENPMIDLMAIAAVDRETEVTYIRRERDWASRAAAEGRFVDKARLLPVL
                     PPTIGGVAGNGNGHDHGHAGSAVAHASHE"
     gene            1451..2044
                     /locus_tag="VIU37_07680"
     CDS             1451..2044
                     /locus_tag="VIU37_07680"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEY6013870.1"
                     /translation="MIRKLIPILLALAVMGAVTGVAAIMLVFLGQDWQDALFWILAAV
                     MIGAALLVVTMRDIIRCGLAMMVCFGALAGIYVLIGAPLIAAAQVIVYIGAISVLILF
                     AIMLTQTKDAPSRLVFQTQAVPAAFASIIIAIVIALAVGATDWGAEVKRIRLATEALS
                     RMLFNDFVLPFEIVSVLLLAAVIGGVFLAKREPGGPS"
BASE COUNT          311 a          735 c          699 g          303 t
ORIGIN      
        1 atcggtccgc cagggcgcca aggaggtcac cctcgtctac cgccgcgaca tgaaggacat
       61 gccggcgtcc aacgaggtcc acgaggcgat cgaggaaggc gtcaccgcca tcttccaggc
      121 cggtcccgtc cgggtcatca ccgacgacgc gggcaaggtc accggcgtcg agttcatccg
      181 gatggcgctc ggcgcgcccg atgcctccgg ccggcggcgt ccggagcccg cgcccggcac
      241 cgagttcacg atcccctgcg accgggtgct gctcgcgatc ggccagggcc cggacctgac
      301 ctggatcggc ccgggctcgg aaggccccga ggccaccaag cagcgccgcc tcaaggccga
      361 cgccgtcacg ttcgagaccg ggcgaccggg ggtcttcggc accggcgacg tgcggatcgg
      421 cgcggcgacc gtggtccagg cgatcgcgga gggccgccgg tcggcctacg cggtggatgc
      481 ctacctcaag ggcaacgacc tgtcggcgat ccggacgcgc cagacactgg ccgagccgca
      541 acccgagttc ctgtcgatcg tcccattcac gagcgaggtc aagacgcccc gctaccggat
      601 gacggcgctc gaggccgagg agcggaacca cagctacatc gagtacgagc tgccctacac
      661 ccgcgaggag gccgtcgccg aatcgacccg ctgcctgcag tgcacctgcg aggcgatcgg
      721 gttctgcgac ctgcgccggc tcgggatcga gtacgggacg acgctcaaga cgctcgagcc
      781 ccagtaccac gcgggggcgg gctaccggag cgtcaccgag aaccggttca ccggggtcaa
      841 ccacgactac atccgcgacg actcacatgc cttcatcctg cgcgagccgt cgcgctgcat
      901 cgactgcggt cgctgcgcca acgtctgcgc cgaggtcgtc ggtgccgcct gctacgactt
      961 catgcggatc gggttcgaca cgctggtcac gacgccgctc gacatgagcc tcaacgacac
     1021 gccgtgcgtg tcctgcggcc ggtgcgccga gacgtgcccg accggggcgc tgatgcccaa
     1081 gccgcggatc ctccagaagt acgacgtcga cgagagccgc tgcatcctgt gcgggatctg
     1141 cgtcgacgcc tgcccgtacg acgcgctccg cgacggcgcc gacatcgaat tggcgcatac
     1201 cagccgcgag aacccgatga tcgacctgat ggcgatcgcc gcggtcgacc gcgagaccga
     1261 ggtgacctac atccggcgcg agcgcgactg ggcgtcccgc gccgcggccg aaggccggtt
     1321 cgtcgacaag gctcgacttc tgccggtcct gccgcccacg atcggcggcg tcgccggcaa
     1381 cggcaacggc catgaccacg gccatgccgg gtcggccgtg gcccacgcct cgcacgagta
     1441 gcccgtcgac gtgatccgca agctgatccc gatcctcctg gcgcttgccg tcatgggcgc
     1501 ggtgacgggg gtcgccgcga tcatgctggt cttcctcggc caggactggc aggacgccct
     1561 gttctggatc ctggccgcgg tcatgatcgg ggccgcgctc ctggtcgtga ccatgcgcga
     1621 catcatccgc tgcggactgg cgatgatggt ctgcttcggg gcgctcgccg ggatctacgt
     1681 cctgatcggg gcgccgctca tcgccgcggc gcaggtgatc gtgtacatcg gcgcgatcag
     1741 cgtcctgatc ctgttcgcga tcatgctgac ccagaccaag gacgcgccga gccggctggt
     1801 cttccagacg caggcggtcc cggccgcgtt cgcgtcgatc atcatcgcga tcgtgatcgc
     1861 gctggccgtc ggcgccaccg actggggcgc cgaggtcaag cggatccggc tcgccaccga
     1921 ggcgctgtcg cggatgctgt tcaacgactt cgtgctgccg ttcgagatcg tcagcgtgct
     1981 cctgctcgcg gcggtcatcg gcggggtctt cctggccaag cgcgaaccgg gcggcccgtc
     2041 gtgagcga
//
LOCUS       DATDDI010000536         2041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_531912, whole genome shotgun sequence.
ACCESSION   DATDDI010000536 DATDDI010000000
VERSION     DATDDI010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531912"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1512)
                     /gene="lepA"
                     /locus_tag="VIU37_07685"
     CDS             complement(<1..1512)
                     /gene="lepA"
                     /locus_tag="VIU37_07685"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HEY6013871.1"
                     /translation="MTIPQDRLRNFSIIAHIDHGKSTLADRLLELTHTIEGRQMMSQV
                     LDSMDLEREKGITIKARAVRLEYTARDGLTYGLNLIDTPGHVDFAYEVSHSLHACEGA
                     ILVVDATQGIEAQTLANVHLALREGLTLIPVLNKIDLPSADPETIMDDLESVLAIPRE
                     EVILASAKDGTGVPEILEAIVARIPAPKGDPSKPLKGLIFDSHYDAYKGVVVYVRLAQ
                     GTLRQGEPIRLMASGAEADPLELGVFRPQLVPVRQLVAGEVGYVATGLKSVRDAQVGD
                     TVTTVAHPASEPLPGYQPAKSLVFAGIYPVSGEDYPLLREALEKLHLNDASFTYEPES
                     SVALGFGFRCGFLGLLHMEIVQERLEREFTLDLIASAPSVEYHVIQTLGRGTVAIDNP
                     ALLPSPIDIETIEEPWVKLSVVTPSQYIGPLMELSTNRRGEFKTMEYLDPLRVLLHFE
                     MPLAELIVDYFDQLKSRSQGYASMDYERLGYRPANLAKVDILVNGEPVDALSLI"
     gene            complement(1564..>2041)
                     /locus_tag="VIU37_07690"
     CDS             complement(1564..>2041)
                     /locus_tag="VIU37_07690"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY6013872.1"
                     /translation="TATVPAPTGRAAIAAADPPGSARRTAALAIVAALVFGVGLVAAG
                     RSAVLVPVSWVALSARLIGIVGVVIPLLIQGRLRVTRAALPLVVIAGIGEVVGSMLSA
                     WGSRESIAITAVMGSQFAAFAAVAAFVLFGERLARVQLVGVVLIAAGVTVLAAVSA"
BASE COUNT          308 a          678 c          753 g          302 t
ORIGIN      
        1 gatcagcgac agggcgtcca ccggctcccc gttgaccagg atgtccacct tggccaggtt
       61 ggccggccgg tagccgagcc tctcgtagtc catcgaggcg tagccctggc tgcggctctt
      121 gagctggtcg aagtagtcga cgatcagctc cgcgagcggc atctcgaagt ggagcaggac
      181 ccgcagcggg tcgaggtact ccatcgtctt gaactcgccg cgccggttgg tggagagctc
      241 catcaacggc ccgatgtact ggctgggggt gaccacgctg agcttgaccc acggctcctc
      301 gatcgtctcg atgtcgatcg ggctgggcag cagcgcgggg ttgtcgatgg cgacggtccc
      361 gcggccgagg gtctggatga cgtggtactc gaccgatggc gcggacgcga tcaggtcgag
      421 cgtgaactcg cgctcgaggc gctcctggac gatctccatg tggagcaggc ccaggaaccc
      481 gcagcggaac ccgaagccca gggccaccga cgattcgggc tcgtacgtga acgaggcgtc
      541 gttgaggtgc agcttctcga gcgcctcgcg gaggagcggg tagtcctcgc cgctgaccgg
      601 gtagatcccg gcgaacacga ggctcttggc gggctggtag ccgggcaacg gctcgctcgc
      661 cgggtgcgcc acggtcgtga cggtgtcgcc gacctgggcg tcgcggacgc tcttgagccc
      721 ggtggccacg tagccgactt caccggccac gagctgcctg acgggaacca gctgcgggcg
      781 gaagacgccg agctcgagcg ggtcggcctc ggccccactg gccatcaacc ggatgggttc
      841 gccctggcgc agggtcccct gggccagccg gacgtagacg acgaccccct tgtaggcgtc
      901 gtagtggctg tcgaagatca ggcccttgag cggcttcgac ggatcgccct tgggggccgg
      961 gatccgggcc acgatcgcct cgaggatctc gggcacgccc gtgccgtcct tggccgaggc
     1021 gaggatcacc tcctcgcgcg ggatggccag cacgctctcg agatcgtcca tgatcgtctc
     1081 ggggtcggcc gacggcaggt cgatcttgtt gagcaccgga atgagcgtga ggccttcgcg
     1141 cagggcgagg tggacgttgg cgagcgtctg cgcctcgatg ccctgggtcg cgtcgaccac
     1201 caggatcgcg ccctcgcagg cgtggaggct gtggctgacc tcgtaggcga agtcgacgtg
     1261 gcccggcgtg tcgatcaggt tgaggccgta cgtgaggccg tcgcgggcgg tgtactcgag
     1321 gcggaccgcc cgcgccttga tcgtgatccc cttctcgcgc tcgaggtcca tcgaatcgag
     1381 gacctggctc atcatctgcc gcccctcgat cgtgtgggtc agctcgagca gccggtcggc
     1441 gagcgtggac ttgccgtgat cgatgtgggc gatgatcgag aagttgcgga ggcggtcctg
     1501 cgggatggtc acgaggcggc agtgtagccc gtcaggtcgc aggttccggg gcggccggca
     1561 cgatcatgcc gacaccgccg ccaggaccgt gacgcccgcc gcgatcagga ccacccccac
     1621 gagctggacg cgggccaggc gctcgccgaa cagcacgaac gcggcgacgg ccgcgaaggc
     1681 cgcgaattgg ctgcccatca cggccgtgat ggcgatgctc tcgcgcgatc cccaggccga
     1741 gagcatggat cccacgacct cgccgatccc ggcgatcacc accagtggca gcgcggcccg
     1801 ggtcacgcgg agccggccct ggatgagcag cgggatgacc acgccgacga tgccgatcag
     1861 ccgcgccgag agggcgaccc aggagaccgg cacgagcacg gccgagcgcc cggcggcgac
     1921 gagcccgacg ccgaagacca gcgccgccac gatcgccagc gcggcggtcc ggcgcgcgct
     1981 gcccggtggg tcggcagcgg cgatggcggc tcgcccggtc ggcgcgggaa cggtcgcggt
     2041 c
//
LOCUS       DATDDI010000537         2896 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_386535, whole genome shotgun sequence.
ACCESSION   DATDDI010000537 DATDDI010000000
VERSION     DATDDI010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2896
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386535"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..1326
                     /locus_tag="VIU37_07695"
     CDS             109..1326
                     /locus_tag="VIU37_07695"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY6013873.1"
                     /translation="MTGGPIIDRLRRVDQDRLDVALAVVLAAVTLVPLWLVPTSSGNR
                     EPDILTILLLLATTLPIAWRRRRPILVLAVTVVATVLAAVTGPSSGVGFGVLIATYSV
                     AVYADRRQSVAALAVTLTAVTAVLILVLASTAGVPPAFYPVGVVVAWLIFGAVWVLGD
                     LVRSRGAAIEALRQRATELEAEREENARLAVADERARIARELHDAVAHSLSVMVVQAG
                     AARRALETAEPGAEIAAERARGALAAIEATGRDTLGEMRRVVGALRPTGSEPYEPQPS
                     LDELDRLLATVREAGLPVELVVEGDARAVPRGVDLSAYRVVQESLTNTLKHAHAASAR
                     VRLCYGSDALDVEVTDDGRGAAAQLLEAPHRGYGLAGMRERVAMAGGELVAQPGPSGG
                     FVVRARLPLGRSL"
     gene            1326..2048
                     /locus_tag="VIU37_07700"
     CDS             1326..2048
                     /locus_tag="VIU37_07700"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013874.1"
                     /translation="MDRIRLVIADDQPLLRTGFRMILEAERDMAVVGEAGNGEEAVAL
                     TRRLLPDVVLRDIRMPVMDGVEATRRITSAPVPASGSGPRVLILTTFDLDEYIVQALR
                     AGASGFLLKDVPPEELAAAIRVVAAGDALLAPSITRRLLDRFASTFTVGGEPQRPAGF
                     ADLTERELEVFTLIGRGLSNHEIADELVLGETTVKTHVSRVFSKLELRDLVQAVVLAY
                     ETGIVRPGEGHLDPGDDHPVLR"
     gene            2350..>2896
                     /locus_tag="VIU37_07705"
     CDS             2350..>2896
                     /locus_tag="VIU37_07705"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013875.1"
                     /translation="MSDGTVSGFGLPMQLGAGEQIAGLDGVDVVVPSVSMMADTIQSG
                     VNLGSSSNQIVGTPAGADRGREQFQVRLTSGRELTAADEGTDLAVIGSDIARRSGLGV
                     GDTIELRGHSFAIVGVREPTMTAPDTTISVPFSTAQQLLHDDLPPIVRDQVGAGGLVS
                     GFIVYPTPGADVETVASEIEVN"
BASE COUNT          405 a         1020 c         1038 g          433 t
ORIGIN      
        1 cagcgcgccc tgcgccctac gtccgacatg cgccgatcca accacgagat gaccagcgtc
       61 gtacccggga tggacgccac ggcacgaccg gcccgctagc gtagtgcgat gaccggcgga
      121 cccatcatcg atcggctgcg acgggtggac caggaccgcc tcgacgttgc gctggccgtg
      181 gtcctcgcag ccgtcacgct ggtccccttg tggctcgtcc ccacctcgtc cggcaaccgc
      241 gagccggaca tcctgaccat cctgctcctg ctcgcgacga ccctgccaat cgcgtggcgg
      301 cggcggcggc cgattctggt gcttgccgtc accgtggtcg cgacggtcct tgcagccgtc
      361 accggaccat cgtcgggcgt cggcttcggc gtgctcatcg ccacgtactc ggtcgcggtc
      421 tacgcagatc gacgacagtc cgtggcggca ctggcggtga cgctgaccgc agtcacggca
      481 gtgctgatcc tcgtcctcgc gtccaccgcc ggcgtcccgc ccgcgttcta cccggtcggg
      541 gtcgtggtcg cctggctgat cttcggggcg gtctgggtgc tgggtgacct cgtccgcagc
      601 cggggagcgg ccatcgaggc gctgcggcaa cgcgccactg agctcgaggc ggagcgcgag
      661 gagaacgccc ggctggcagt cgccgacgaa cgcgcccgga tcgcgcgtga gctgcatgat
      721 gccgtcgccc acagcttgag cgtcatggtg gtccaggccg gcgcggcacg acgcgcgctc
      781 gagacggccg agcccggcgc ggaaatcgcc gcggaacgag cacgaggcgc cctcgccgcg
      841 atcgaggcga ccgggcgcga caccctgggt gagatgcgcc gcgtggtcgg cgcgctccgg
      901 ccgaccggca gcgagcccta cgagccacag ccgtcgctgg acgagctgga caggctcctg
      961 gcgaccgtcc gggaggctgg cttgccggtc gagctcgtgg tcgaaggaga cgcgcgggcc
     1021 gtcccgagag gggtcgacct gtccgcgtac cgcgtggtgc aggagtcact gacgaatacc
     1081 ctgaagcacg cccacgccgc gtcggcccga gtccggctgt gctacggcag cgacgcgctc
     1141 gacgtggagg tcaccgacga tggacgcggc gcggcggccc agttgctgga ggcgccgcat
     1201 cgcggctacg ggctggccgg catgcgtgag cgagtcgcga tggcgggcgg cgagctggtg
     1261 gcgcagccgg gcccgagcgg cggcttcgtg gtccgtgcgc ggctgccgct gggacggtcg
     1321 ctttaatgga ccggatccgg cttgtcatcg ccgacgacca gccgctcctg cggaccgggt
     1381 tccgcatgat cctggaggcc gagcgggaca tggcggtggt cggcgaggcc ggcaacgggg
     1441 aggaggcggt cgcgctgacc cgccggctcc tgcccgacgt ggtcctgagg gacatccgca
     1501 tgccggtgat ggacggtgtc gaggcgaccc gccgcatcac gtcggcgccc gtgccggcgt
     1561 cggggtccgg gccgcgggtc ctgatcctga ccacgttcga tctcgacgag tacatcgtcc
     1621 aggcgctgcg ggccggtgcc tccggcttcc tgctcaagga cgtgcccccg gaggagctgg
     1681 cggcggcgat ccgcgtggtc gccgcgggtg acgcgctgct cgcgccgtcg atcacccgga
     1741 gactcctcga ccggttcgcc tccacgttca cggtcggcgg cgagccgcag cggccggccg
     1801 ggttcgcgga tctcacggag cgggagctcg aggtgttcac gctcatcggg cggggcctgt
     1861 cgaaccacga gatcgccgac gagctggtgc ttggcgagac gaccgtcaag acccacgtgt
     1921 cgcgcgtctt ctcgaagctc gagctccgag acctggtgca ggccgtcgtg ctcgcctacg
     1981 agacgggcat cgtccggccg ggtgagggcc acctcgatcc cggggacgac caccccgtcc
     2041 tccgctgaac gacgtcgtcc ttcccaaaga cgacgccgaa tcaccctcgg aggggacgcc
     2101 acgggctggg agctgccgca ggctgttcgt catcgggccg cccgtcatgt ggcccggccg
     2161 tcatcagatc tgcgaggact cccgcgatgc gcctgctccg caacctagcc cgccgcaagc
     2221 tgcggacggg tctcaccatt gccgggatca cgatcggcat ctgggccctg gtcgtcttct
     2281 cggcgatggc caacaagatc gacgccctcg ttgccggggg ctcccgctac tacgcggaca
     2341 agggtgctcg tgagcgacgg caccgtgtcc gggttcggcc ttccgatgca gctcggcgcc
     2401 ggcgaacaga tcgccgggct cgacggcgtc gacgtcgtcg tgccgtccgt cagcatgatg
     2461 gcggacacga tccagagtgg cgtcaacctg ggcagcagca gtaatcagat cgtcggcacg
     2521 cccgccgggg ccgaccgcgg ccgcgagcag ttccaggtcc gcctcacgtc gggtcgcgaa
     2581 ctgaccgccg cggacgaggg cacggacctc gcggtcatcg gttccgatat cgcccgcagg
     2641 agtggccttg gcgtcggcga cacgatcgag ttgcgcggac actcgtttgc gatcgtcggc
     2701 gtacgcgagc cgacaatgac cgccccggat acgacgatca gcgtcccgtt ctccaccgcg
     2761 cagcagctcc tccacgacga cctcccgccg atcgtccgcg atcaggtcgg cgccggtgga
     2821 ctggtgagcg gattcatcgt ctatccgacg ccgggcgctg acgtcgagac ggtcgccagc
     2881 gaaatcgagg tgaacg
//
LOCUS       DATDDI010000538         1664 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_531989, whole genome shotgun sequence.
ACCESSION   DATDDI010000538 DATDDI010000000
VERSION     DATDDI010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531989"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..861)
                     /locus_tag="VIU37_07710"
     CDS             complement(<1..861)
                     /locus_tag="VIU37_07710"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6013876.1"
                     /translation="MRDTQSVGVLPDDVTDHRLTRPDGRVVAWTEAGVPGGRPILRVP
                     GTPGSRFSLRADRTPWLDRGLRVITTERPGFGASTRLEGRRFAEHADDTAAILDALEI
                     DTLPVYGASGAAPHILALAARHPERVSAISIMVGSAPLLASEAADQIDLNATEYRLYH
                     AGDLAEIWRITDEVRTGLLADPMAAFRSIMATAPAADRVILEDPAWQRGFVMGITEAL
                     RPGAGGWYDEGLADLGPWDFDLDAVQADVTWWHSDGDRNAPLSAARRLVGQLPRARLH
                     VWQDAGHLTTY"
     gene            996..1313
                     /locus_tag="VIU37_07715"
     CDS             996..1313
                     /locus_tag="VIU37_07715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013877.1"
                     /translation="MQFNLGLQGLGILAACSLGFGVVAQIVGRSAGRWMWLVAAVGWF
                     VGGLFMSEVMFATATEGDIQPIIDGLAFDESLLGGLIVGTLAAIAAWVVVRGGVFNRR
                     TLV"
     gene            complement(1344..>1664)
                     /locus_tag="VIU37_07720"
     CDS             complement(1344..>1664)
                     /locus_tag="VIU37_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013878.1"
                     /translation="AIVGIGLVGLAGGAFLAVDWALMTDIIPKASAGRYMGLSNVVEA
                     TNGPIATTIGGALMYLVGLALGVAAGARAAMLVAVVMFALGAVLLTRVQEPPRKTPSR
                     PAVG"
BASE COUNT          232 a          581 c          599 g          252 t
ORIGIN      
        1 gtacgtagtc aggtgaccgg cgtcctgcca tacatgcagc cgggcccgtg gcagctggcc
       61 cacgagccgg cgggccgccg acagcggcgc gttgcgatcg ccgtccgaat gccaccaggt
      121 cacatcggcc tgcaccgcgt ccaggtcgaa gtcccacggc ccgagatcgg ccagaccctc
      181 gtcgtaccag ccgccggcgc ccgggcggag cgcctccgtg atccccatca cgaacccgcg
      241 ctgccaggct gggtcctcga ggatgacgcg gtcggcggca ggtgcggtgg ccatgatcga
      301 gcggaaggcc gccatggggt ccgccagcaa cccggtccga acctcgtcgg tgatccgcca
      361 gatctcggcc aggtcgccgg cgtggtacag gcggtactcg gtcgcattca gatcgatctg
      421 gtccgcggcc tcgctggcga ggagcggtgc gcttccgacc atgatcgaga tggccgagac
      481 gcgttccgga tggcgggccg cgagcgcgag gatatgggga gcggctccgc tcgcgccgta
      541 gacgggcagc gtgtcgatct cgagcgcgtc caggatggcc gcggtgtcat cggcgtgctc
      601 ggcgaaccga cggccctcga gccgggtcga cgcaccaaag cctgggcgct cggtggtgat
      661 gacccgcaac ccgcggtcca gccagggcgt gcgatccgca cgcagcgaga acctcgagcc
      721 aggggttccc ggaaccctga ggatcggccg tccgcccggc acgcccgctt cggtccaggc
      781 gacgactcga ccgtcgggcc gcgtcaggcg gtggtcggtc acgtcgtcgg gcaggacgcc
      841 gacggattgg gtgtctcgca tctcggccgc tcctgtgctc gccgggcttc gctggtggtt
      901 cgggtcgttc ggctctaccc gcggtcagcc caccggtcga tcctagtcgg ttgcggaccc
      961 gtgcgaacgt ccgcgggagt ggagggaaac gtcagatgca gttcaatctt gggctccagg
     1021 ggctggggat cctcgccgcc tgctccctgg gcttcggcgt cgtggcccag atcgtcggac
     1081 gatcggccgg ccgctggatg tggctggtcg ccgccgtcgg ctggttcgtc ggcgggttgt
     1141 tcatgagcga agtcatgttt gcgacggcga ccgagggcga catccagccg atcatcgacg
     1201 gcctggcctt cgacgagtcg ctgctcggcg gcctgatcgt cgggacgctc gccgcgatcg
     1261 cggcctgggt cgtggtccgc ggcggagtct tcaaccggcg gacactggtc tgacgctgac
     1321 cgatccagcg accgacgagc cggtcagcca actgctggcc ggctcggcgt cttccgcggc
     1381 ggttcctgga cccgggtcag caggacggcc ccgagcgcga acatgaccac cgcgaccagc
     1441 atggccgcgc gcgcacccgc cgcgacgccg agggccaggc cgacgaggta catcagcgcg
     1501 ccgccgatcg tcgtggcgat cggaccgttg gtcgcctcga cgacgttgct cagccccatg
     1561 tagcgcccgg ccgacgcctt cgggatgatg tccgtcatga gtgcccagtc cacggccagg
     1621 aaggcgccac ccgccagccc cacgaggccg atcccgacga tggc
//
LOCUS       DATDDI010000539         2041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_12053, whole genome shotgun sequence.
ACCESSION   DATDDI010000539 DATDDI010000000
VERSION     DATDDI010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12053"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VIU37_07725"
     CDS             <1..315
                     /locus_tag="VIU37_07725"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6013879.1"
                     /translation="HTPPGTTLTIRATPGRSGRVTLSLADDGPGVPDAHLSRLFDKFY
                     RVGGTGDGARHGMGIGLSVVRGMMEALGGSAVARRGEAGGLTIELELPIAPDPPIEAP
                     AR"
     gene            312..1034
                     /locus_tag="VIU37_07730"
     CDS             312..1034
                     /locus_tag="VIU37_07730"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013880.1"
                     /translation="MTSPSGAHVLLVEDDEATRHSVVINLTAHGFRVAEAADIRSAML
                     HWETSRPDVILLDLGLPDADGAVLIRRVRRDATTPILVLSARNAEYDKVAALEAGADD
                     YVTKPFGLPELRARVGALLRRAAGPAADAGGMVSVGPVVIDIARREVTVDGQPIELTP
                     REYELLKTLLGQPGRLVTRGRLLRAVWGSAYGSEAHYLHVYVSRLRRKLDAADPSGRA
                     SGLIVAEPGVGYRIAEGGPTSG"
     gene            1121..1378
                     /locus_tag="VIU37_07735"
     CDS             1121..1378
                     /locus_tag="VIU37_07735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013881.1"
                     /translation="MEPSPIVPFPLAPTEQFERDLDEIEAAIAMVVSGAATRIRLIGL
                     AAAVDVAPEGLARAQLAGVTFAVDRPADRQPAIIIGPLAQR"
     gene            1631..>2041
                     /locus_tag="VIU37_07740"
     CDS             1631..>2041
                     /locus_tag="VIU37_07740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013882.1"
                     /translation="MPKIKALSTFSSDNLSSVAYATELIMFTLVAAGSSAFWLVMPIS
                     LLIVTIFVIIVVSYRQTIRAYPNGGGSYIVARENLGTGPALVAAAALLTDYVLTVSVS
                     VAAGVLAITSAFPPLEPLRVPLGVAAILFVMVINL"
BASE COUNT          266 a          729 c          733 g          313 t
ORIGIN      
        1 cacacgccac cgggcaccac cctgacgatc cgggcgacgc ccggacgatc cggtcgcgtc
       61 accttgagcc tcgcggacga tggtccgggc gtccccgacg cgcacttgtc acggctgttc
      121 gacaagttct atcgcgtcgg cgggaccggc gacggcgccc ggcatgggat gggcatcggg
      181 ctgtccgtcg tgcgcgggat gatggaggct ctcggcggct cggccgtggc ccggcgaggc
      241 gaagccggcg gactcacgat cgagctcgaa ctgccgatcg ccccggaccc gccgatcgag
      301 gcacccgcgc gatgacgtcg ccgtccggcg cccacgtcct gctggtcgag gacgacgagg
      361 ccacccgcca ctcggtcgtg atcaacctca cggcgcacgg attcagggtc gcggaggcgg
      421 cggacatccg gtcggcgatg ctccactggg agaccagccg cccggacgtg atcctgctgg
      481 acctgggcct gcccgacgcc gatggcgccg tcctgatccg ccgcgtacgg cgcgacgcca
      541 cgacgcccat cctcgtcctg tcggcgcgga atgccgagta cgacaaggtc gcggccctgg
      601 aggcgggcgc cgacgactac gtcaccaagc ccttcgggct gcccgagctg cgcgctcgcg
      661 tcggggcact cctccggcgc gcggccggac ccgcggccga tgcgggaggc atggtctcgg
      721 tcgggccggt ggtcatcgac atcgcccgac gcgaggtcac ggtcgacggg cagccgatcg
      781 agctgacgcc gcgcgagtac gagctgctca agaccctgct cggccagccc ggccggttgg
      841 tgacccgggg ccggctcctc cgggcggtct ggggctcggc gtatggctcg gaggcgcact
      901 acctgcacgt ctacgtgagc cggttgcgcc ggaagctgga tgcggccgat cccagcggcc
      961 gggcgagcgg gttgatcgtc gccgagcccg gcgtcggcta ccggatcgcc gagggcgggc
     1021 caacctccgg ctgaagcctc cgcgctcttg agcgcttgtt gagcggcgcg gagggggttg
     1081 cgggtcgtgg cctcttggcg gtcgccgata cggtgggggc atggaaccca gcccgatcgt
     1141 gcccttcccg ctcgccccga ccgagcagtt cgaacgtgac ctggacgaga tcgaggcggc
     1201 gatcgccatg gtcgtctccg gtgcggccac ccggatccgg ctgatcgggc tcgccgcagc
     1261 ggtggacgtg gctccggagg gactcgcccg cgcgcagctc gccggcgtca cctttgccgt
     1321 cgatcgcccg gcggatcgcc aacccgcgat catcatcggc ccgctcgcgc agcggtaggt
     1381 cgtgatccca tcacgacggc ggccggttgg accagccggc cgcgcaagcc tggtcggccg
     1441 gcgaccggcc gaccgccgga tccgggtcga tgccccgagt tccccctact ttcgatacac
     1501 gggccccggt cggctgacgg cgcggcctgc ggcaagcgcg cccaccggga agcgggaccg
     1561 gctggtcgtc ggggcacgcc ggttcctgtt cggcaggccg ctggccagcg gcgaggagct
     1621 cgaggagcgc ttgccgaaga tcaaggccct gtccacgttc tcgagcgaca acttgagctc
     1681 ggtggcgtac gcgaccgagc tgatcatgtt cacgctggtg gcagccggct cgagcgcgtt
     1741 ctggctggtg atgccgatct cgctgctgat cgtgacgatc ttcgtgatca tcgtcgtctc
     1801 gtatcgccag accattcgcg cctacccgaa tggcggcggc agctacatcg tcgccaggga
     1861 gaacctcgga acgggaccgg cgctcgtcgc ggctgccgcg ctgctgaccg actatgtgct
     1921 gaccgtctcg gtcagcgtcg cggccggcgt cctggcgatc acctccgcgt tcccgccgtt
     1981 ggagcccctg cgtgtcccgc tcggcgtcgc ggcgatcctg ttcgtgatgg tgatcaacct
     2041 c
//
LOCUS       DATDDI010000540         3990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_594636, whole genome shotgun sequence.
ACCESSION   DATDDI010000540 DATDDI010000000
VERSION     DATDDI010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3990
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594636"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            333..644
                     /locus_tag="VIU37_07745"
     CDS             333..644
                     /locus_tag="VIU37_07745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013883.1"
                     /translation="MSEHRTPRIACAVCGIELEPQDVVIVTREIVPAWATSTPETTTV
                     VHRACEFRDSRADHTWTREPPQTMAHVMAILAVGSDSVFDRAHAANRRGLLPTASSDR
                     S"
     gene            complement(696..1733)
                     /locus_tag="VIU37_07750"
     CDS             complement(696..1733)
                     /locus_tag="VIU37_07750"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY6013884.1"
                     /translation="MTLHDEIAEQPEVAARLLAAQSGATDEIGAWLRQRPLRHVVIAA
                     RGTSDHAAIYAQYVLGVRNRLSVGLGTPSIVSLYGVVPDFSDALVIGISQSGASPDIV
                     AVIAAARAQGSPTIAITNEPASALAEAADRTIPLGAGPERAIAATKTYTSELLAIALL
                     SAALADDPADRPALAGVPEAIARTLSLEPEIERIAHDQAGAARALVIARGFEYATARE
                     WALKLKELGQVFADPYSAADFQHGPLALVEAGVPVLAITRAGAPEADVVALLARLRAD
                     LDAALMVLSDRPEALATATWPVRLPDGTPEWLGPIVSIVAGQLHALHLTRARGLDPER
                     PRNLRKVTRTT"
     gene            complement(1730..3385)
                     /locus_tag="VIU37_07755"
     CDS             complement(1730..3385)
                     /locus_tag="VIU37_07755"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6013885.1"
                     /translation="MSFARGRVRVGSGGMSIRPLAEPGLQVLGRIMLAFVGGTLPDWV
                     TRRLAMAPVAGMTLFRHHNVRSAGQVRELTEAFQRAGAGMAWTRGGSGATPLPLLVAA
                     DQECGQFQALGDDATQFGGNMALGAAGDADLAERVGRAIALEARAMGVNVVYGPVLDL
                     ATEPANAALGIRSFGDDPAAVARLGAAMIRGIQGAGAAATLKHFPGLGEVRQDTHFGL
                     GVVDADRERLDTSTLVPFRAAIVAGVQLAMSAHIAVPALTGDPHLPATLSADVMDGLL
                     RRELGFGGVTISDALDMRALAQGAEQAAQIEAAVRAGVDLLLSAADRDAQGRIEAALV
                     SALAAGRFDRAALAASRAQIDALRAWLAAAGPGPDLDVVASAGHRALSRELAERSITL
                     ARGPLERLAPDSRILAVMPQPTDLTPADTSSTVAPGLGRALRTRFASVDEIVVPLAPG
                     DSEIAEVRRLAAGVDAVVVGTIDAIRQPGQAALVDAVARVAPRTIAVALRTPWDVAGY
                     PAGVPAVCTYSILPDSLEALARVLAGALAPVGRLPVAVPGLPA"
     gene            complement(3382..>3990)
                     /locus_tag="VIU37_07760"
     CDS             complement(3382..>3990)
                     /locus_tag="VIU37_07760"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEY6013886.1"
                     /translation="SLVVAVAVGLLNVLIASLAAYPLAKMRFRGRDAIFYALLATLIV
                     PAQLTYIPSFILAVNVFHYYDTLAALIFPNLVSAFNIFLLRQAFRGVPNDLIDAARVD
                     GAGEWRIWWQILLPIVRPSLAAVAIFTFVTSWNDFLWPSLMLHTPGGMTLPVGLAALQ
                     GFFSSDFRSIAAGVTMTVIPILLFFIAVQRYFVKGLAGAVKG"
BASE COUNT          606 a         1457 c         1448 g          479 t
ORIGIN      
        1 ccggacaggc ccgtcattgc gacgaccact ccgaccccgc agagggcgcc gacaaggacc
       61 gacaccagca agtaccggcg attcatgtgt ggtgtcggtg ggtccgccgg tgtccagcca
      121 cctggtcgat cacagatcct ccgtcatccc tgcggatcgg tgcgtgcgcg caactggtac
      181 tttcgtggac cgttgaagtg tgcgcccgac gacggcatct tgaggcacgc gaagcctcaa
      241 cgagcggttc cgatccaaca gaccgtgaca ggcgccgagg cttcgcgcca ccgtcgctcg
      301 cattccatcc gcgcgttcgg gaggtcccgg ccatgagcga gcatcgcaca ccacggatcg
      361 cgtgtgccgt gtgcgggatc gagctcgaac cacaggacgt cgtgatcgtg acgcgcgaga
      421 tcgttccggc ctgggcgacc tccacgccgg agacgaccac ggttgtccat cgagcctgcg
      481 agttccggga tagtcgcgcc gatcacacct ggacgcgaga accgccccag acgatggcgc
      541 acgtcatggc catcctcgca gtcgggagcg attcggtgtt cgaccgcgcg catgccgcca
      601 accggcgagg actgctccca accgcgtcga gcgacaggtc ctgaggcgaa tcggacggcc
      661 cgcaagggcg gcatcgcggc gtgacggccg cgcgcctacg tcgtccgggt caccttccgc
      721 aggtttcgtg gccgctccgg gtccagcccg cgcgcgcggg tcaggtgcag tgcatgcagc
      781 tgcccggcga cgatcgatac gatcgggccg agccactccg gcgtgccgtc cggcagccgg
      841 acgggccagg tcgcggtcgc gagcgcctcg ggccggtcgg acaggaccat gagcgcggcg
      901 tcgagatcgg cacgcagccg ggcgagcagc gccaccacgt cggcctcggg cgccccggcg
      961 cgcgtgatcg ccaggaccgg aacgcctgcc tcgaccagcg ccagcgggcc gtgctggaag
     1021 tcggccgccg agtatgggtc ggcgaagacc tggccgagct ccttgagctt gagcgcccat
     1081 tcgcgggccg tggcgtactc gaacccacgg gcaatcacca gggcgcgcgc ggcgcccgcc
     1141 tggtcgtggg cgatccgctc gatctcgggc tccagcgaca gggtccgggc gatcgcctcg
     1201 gggacgcccg cgagcgcggg ccggtccgcc gggtcgtccg cgagcgccgc cgacagcagc
     1261 gcgatcgcca gcagctcgga cgtgtacgtc ttggtcgcgg cgatcgcccg ttccgggccg
     1321 gctcccagcg ggatcgtccg gtcggcggcc tccgccagcg ccgaggcggg ctcgttggtg
     1381 atcgcgatcg tcggcgagcc ctgcgcgcga gccgcggcga tcaccgccac gatgtccggc
     1441 gacgcccccg actggctgat cccgatgacg agcgcgtcgc tgaagtccgg gacgacgcca
     1501 tacagcgaca cgatcgacgg cgtccccagc ccgaccgaca gccggttgcg cacgccaagg
     1561 acgtactggg cgtagatcgc ggcgtggtcg ctcgtccccc gcgccgcgat cacgacgtgg
     1621 cggagcgggc gctgacgcag ccacgccccg atctcgtcgg tcgccccgga ctgcgcggcg
     1681 agcaggcgcg cggcgacctc gggctgctcg gcgatctcgt cgtggagggt catgccggca
     1741 atcccggtac ggccaccggc agccgcccca ccggagcgag cgccccggcg agcacgcggg
     1801 ccagcgcctc gagcgagtcg ggcaggatcg aataggtgca cacggccggc acgccggccg
     1861 gatagcccgc cacgtcccac ggcgtccgca gcgcgacggc gatcgtgcgc ggtgccaccc
     1921 gggcgaccgc gtccaccagc gccgcctggc cgggctggcg gatcgcatcg atcgtcccca
     1981 cgaccacggc atcgacaccc gccgcgagcc gccggacctc ggcgatctcc gagtccccag
     2041 gcgcgagcgg gaccacgatc tcgtcgaccg aggcgaagcg cgtccgaagg gcccggccga
     2101 gtccgggcgc gaccgtcgac gaggtgtcgg ccggcgtgag atcggtgggc tgcggcatga
     2161 cggcaaggat gcgtgaatcg ggggcgaggc gttcgagggg cccgcgcgcc agcgtgatcg
     2221 agcgctccgc cagctcccgc gacagggccc ggtgcccggc cgaggcgacg acgtcgagat
     2281 cgggccctgg tccggcggcc gccagccagg cccggagggc atcgatctgg gcgcgcgagg
     2341 ccgccagggc ggcgcgatcg aagcgccccg cggcgagcgc ggacacgagc gccgcctcga
     2401 tccggccctg cgcgtcgcgg tccgcggcgg acagcagcag gtcgacgccc gcccggacgg
     2461 cggcctcgat ctgggcggcc tgctcggcgc cctgtgcgag tgcccgcatg tcgagcgcat
     2521 cgctgatcgt gacgccgccg aacccgagct cccgacggag caacccgtcc atcacgtcgg
     2581 ccgagagcgt cgccggaaga tgcgggtcgc cggtcagcgc cggcacggcg atgtgcgcgg
     2641 acatggcgag ctggacgccg gccacgatcg cggcccggaa cgggaccagg gtggaggtgt
     2701 ccaggcgttc tcgatcggcg tccacgacgc cgagcccgaa gtgcgtgtcc tggcggacct
     2761 cgccgaggcc ggggaagtgc ttgagcgtgg ccgccgcgcc ggcaccttgg atgccgcgga
     2821 tcatcgccgc gccgagccgc gcgacggccg ccggatcgtc gccgaacgag cggatgccga
     2881 gggccgcgtt cgcgggctcg gtggcaagat cgagcaccgg gccgtagacg acgttgacgc
     2941 ccatcgcccg cgcctcgagc gcgatcgcgc gaccgacgcg ctccgccagg tccgcgtcgc
     3001 cggccgctcc gagcgccatg ttgccgccga actgggtggc atcgtccccc agcgcctgga
     3061 actggccgca ttcctggtcg gcggcgacga ggagcggcag gggcgtcgct ccgctgccgc
     3121 cacgcgtcca ggccatgccg gcccccgccc gctggaacgc ctcggtcagc tcgcggacct
     3181 gccccgccga gcggacgttg tggtgccgga acagggtcat cccggccacc ggcgccatgg
     3241 ccagccgccg cgtcacccag tccgggaggg tcccgccgac gaacgccagc atgatccggc
     3301 cgaggacctg caggcccggc tcggcgagcg gccggatcga catcccgccg ctgccgaccc
     3361 gcacgcgccc ccgcgcgaag ctcatccctt gaccgccccg gccagcccct tcacgaagta
     3421 gcgctggacg gcgatgaaga agagcaggat cgggatgacc gtcatcgtca cgcccgcggc
     3481 gatcgagcgg aagtcggacg agaagaagcc ctgcagtgcg gccagcccga ccgggagcgt
     3541 catgccgccc ggggtgtgga gcatcaggga cggccacagg aagtcgttcc acgacgtgac
     3601 gaacgtgaag atcgccaccg ccgccagcga cggccgcacg atcggcagca ggatctgcca
     3661 ccagatccgc cactcccccg ccccgtccac gcgggccgcg tcgatcaggt cgttgggcac
     3721 gccgcggaac gcctgccgca gcaggaagat gttgaaggcg ctaacgaggt tcgggaagat
     3781 cagcgcggcc agcgtgtcgt agtagtggaa gacgttgacc gccaggatga agctcgggat
     3841 gtaggtcagc tgcgccggca cgatgagcgt ggccagcagc gcgtagaaga tggcatcacg
     3901 cccgcggaac cgcatcttgg ccagcgggta ggcggccagc gaggcgatca gcacgttgag
     3961 caacccgacc gccacggcca ccaccaggct
//
LOCUS       DATDDI010000541         3224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_95141, whole genome shotgun sequence.
ACCESSION   DATDDI010000541 DATDDI010000000
VERSION     DATDDI010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3224
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95141"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..697
                     /locus_tag="VIU37_07765"
     CDS             <1..697
                     /locus_tag="VIU37_07765"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6013887.1"
                     /translation="LTGGGAIVDLGCHCIEIIRNFVGKGNRPLEVLCHTDTLVHPIAD
                     EDNAVALIRFESGAIGQFEVSWTFRGGMDLRDEVAGTNGTIWMNHFLRTGFEMFTAGG
                     GSGYVAEKAETSAGWLFPVGDEVSELGYVDMFSDMFRALDTGGTPQETLYDGYVVNAV
                     MDAAYRSAKAHAWEPVELDWRGGTTPRITTGSETYEGLVVIKREVLPDGRQKLILKDP
                     ASGDFSDRVVAAS"
     gene            complement(669..1316)
                     /locus_tag="VIU37_07770"
     CDS             complement(669..1316)
                     /locus_tag="VIU37_07770"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEY6013888.1"
                     /translation="MTADIRAVVFDLGAVLIDWNPRHLYRRLFDGDDVAMERFLADVC
                     TPAWNAGLDAGGSWHEAVELLARRHPEQRDLIVAYDERWPEMLGGPIQGTVEIVRELL
                     ASGVGLAVLSNWSAEKFPVARERYAFLDWFETLVISGEVGVSKPDPRIYRYLLDRTGF
                     DPATTLFVDDQPANLVVAAAHGLRTHQFRDPPTLRADLVSLGLLPEVSSPPPPGR"
     gene            complement(1313..2662)
                     /locus_tag="VIU37_07775"
     CDS             complement(1313..2662)
                     /locus_tag="VIU37_07775"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY6013889.1"
                     /translation="MTQRTTPVHGGSAGPRDDAQGPAQPSARFGPLPDESLDALVTVL
                     DEVRLGRSSARADVVARTGLGRAIVAQRIGELIERGLIAEGDVGPSTGGRPPRQLAFR
                     SDAGHLLVADLGATSIDVAVTTLDGRILGHHDEPMLVADGPDACLGRVEALFEQLLES
                     TDGIPGRLWGVGIGVPGPVEFQSGRPISPIMPGWDGYPIRERFTERYRAPVWVDNDVN
                     ILALGEWRSGVAIGHDNVVVVKIGTGIGAGIISDGRMHRGAQGSAGDVGHIQVVDDPA
                     VVCRCGNIGCLEALAGGAALGQAGLAAARDGRSERLRAALDQRGTVTAEDVARAASFG
                     DPVAVAMLQSAGRRIGSMLSSVVNFFNPSLIVIGGGVANSPDQLLAAIRETIYRRSLP
                     LATRDLLIQRSSLGGLAGVIGASAMVVDQLFAREAIGRWIAAGEPSGLPEVAMAGPG"
     gene            2855..>3224
                     /locus_tag="VIU37_07780"
     CDS             2855..>3224
                     /locus_tag="VIU37_07780"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6013890.1"
                     /translation="MRRIADVGAAVIGTGFIGTVHVEALRRIGVQVRGVLGSTPERGR
                     VRAEALGTPRAYASLDELLDDPSVHVVHVTSPNHLHVPQTERILASGRHVVCEKPLAL
                     TASESASLVAQAAASGLVCAV"
BASE COUNT          485 a         1151 c         1149 g          439 t
ORIGIN      
        1 gctgaccggc ggcggcgcca tcgtcgacct gggctgccac tgcatcgaga tcatccgcaa
       61 cttcgtcggc aaggggaacc gcccgctcga ggtgctgtgc cacaccgaca cgctcgtcca
      121 cccgatcgcc gacgaggaca acgcggttgc gctgatccgg ttcgaatccg gggccatcgg
      181 ccagttcgag gtgagctgga cgttccgcgg cgggatggac ctgcgcgatg aggtggccgg
      241 cacgaacggg acgatctgga tgaaccactt cctgcgcacc gggttcgaga tgttcaccgc
      301 cggcggcggg agcggctacg tcgccgagaa ggcggagact tcggccggct ggctcttccc
      361 ggtcggcgac gaggtcagcg agctcggcta cgtggacatg ttcagcgaca tgttccgcgc
      421 gctcgacacc ggcggcaccc cgcaggagac gctctacgac ggctacgtgg tcaacgccgt
      481 catggacgcc gcgtaccgat cggcgaaggc gcatgcctgg gaaccggtcg agctggactg
      541 gcggggcggg accacgccac ggatcaccac ggggtccgag acgtacgaag ggctcgtcgt
      601 gatcaagcgc gaggtgctgc cggacggacg ccagaagctg atcctcaagg accccgcgtc
      661 gggcgacttc agcgaccggg tggtggcggc gagctgacct cgggcaacag cccgagcgac
      721 accaggtccg cccgcagcgt gggtggatcc cggaactggt gggtccgcag gccgtgcgcg
      781 gcggcgacca cgaggttggc cggctggtcg tcgacgaaca gcgtcgtggc tggatcgaac
      841 ccggtccgat ccagcaggta ccggtagatc cgcgggtccg gcttggagac gccgacttcg
      901 cccgagatca cgagggtctc gaaccagtcc aggaacgcat accgctcccg agcgaccggg
      961 aacttctcgg cggaccagtt gctcagcacg gccagcccga ccccggacgc caggagctcg
     1021 cggacgatct cgacggtgcc ctggatcggc ccgccgagca tctcgggcca gcgctcgtcg
     1081 tacgccacga tcaggtcgcg ctgttccggg tggcggcgtg ccagcagctc gaccgcctcg
     1141 tgccacgacc cgccggcatc gaggccggcg ttccaggcgg gggtgcagac gtcggcgagg
     1201 aaccgttcca tcgccacgtc gtcgccgtcg aacagccggc ggtagagatg ccgcgggttc
     1261 cagtcgatca ggacggcgcc gaggtcgaag acgacggccc ggatgtcggc cgtcatcccg
     1321 gcccggccat cgccacctcg ggcaggccgg acggctcgcc ggccgcgatc cagcgaccga
     1381 tcgcctcgcg cgcgaagagc tggtcgacga ccatcgccga tgccccgatg acgccggcga
     1441 gcccgccgag cgacgatcgc tggatcagca ggtcgcgcgt ggccagcggc agtgaccgtc
     1501 ggtagatcgt ctcgcggatg gcggccagga gctggtcggg gctgttcgcg acgccgccgc
     1561 cgatcacgat caacgacggg ttgaagaagt tgacgacgct cgacagcatc gagccgatcc
     1621 ggcggccggc cgactggagc atggccaccg ccaccggatc gccgaatgag gcagcccgcg
     1681 ccacgtcctc ggcggtcacc gtcccgcgct ggtcgagggc ggccctcagg cgctcgctgc
     1741 ggccgtcgcg cgccgccgcg agcccggcct ggccgagcgc cgcgccgccg gccagcgcct
     1801 ccaggcagcc gatgttcccg caccggcaga ccacggccgg atcgtccacc acctggatgt
     1861 ggccgacgtc gccggcgctg ccctgggcgc ctcggtgcat ccggccgtcc gagatgatcc
     1921 cggcgccgat cccggtgccg atcttcacca cgacgacgtt gtcgtgcccg atcgccacgc
     1981 cggaccgcca ctcgccgagc gccaggatgt tcacgtcgtt gtcgacccag acgggcgcgc
     2041 ggtagcgctc ggtgaaccgc tcgcgaatcg ggtagccgtc ccagccgggc atgatcggcg
     2101 agatcggccg cccggactgg aattcgaccg ggccggggac cccgatgccg acgccccaca
     2161 accgcccggg gatgccgtcg gtcgactcca gcagctgctc gaacagcgcc tccacccggc
     2221 cgaggcaggc gtccggaccg tcggcgacga gcatcggctc gtcgtgatgc ccgaggatcc
     2281 gtccatcgag ggtggtcacc gccacgtcga tgctggtcgc cccgagatcg gcgaccagaa
     2341 ggtggccggc gtcggaccgg aacgcgagct ggcggggcgg ccggccgccg gtgctcgggc
     2401 cgacgtcccc ctcggcgatc agtccacgct cgatcagctc cccgatccgc tgggcgacga
     2461 tcgcccggcc gagaccggtc cgggccacga cgtcggcccg ggcggacgat cgtccgagtc
     2521 gaacctcgtc cagcacggtg accagcgcgt cgagcgattc gtcggggagc ggcccgaacc
     2581 gcgccgaagg ctgggcgggg ccctgggcgt cgtcgcgcgg gccggctgac ccgccgtgga
     2641 ccggtgtcgt gcgctgggtc acgccccgat gatacgcgct ttcgcgggac ttttgcactt
     2701 gacagcgcaa agtaggatgc gtaggtgaag aaggttcgag ggctctcgaa cacgtgccgc
     2761 gtcccctgca cggacttccg ctggttcccg cgcttccgat ctagctagac tgtctagacg
     2821 ttcacacgct aacgcgcagg tgggtgagca gggcatgagg aggatcgccg acgtcggcgc
     2881 ggccgtcatc ggcacgggct tcatcgggac ggtgcacgtc gaggcgttgc gccggatcgg
     2941 cgtccaggtt cgcggcgtgc tcggcagcac cccggagcga ggccgcgtcc gcgccgaggc
     3001 gctcggcacc cctcgcgcct atgcctcgct cgacgagctc ctcgacgatc cctcggtcca
     3061 cgtcgtccac gtcacgtcgc cgaaccacct ccacgtcccc cagacggagc ggatcctggc
     3121 cagcggccgg cacgtcgtct gcgagaagcc gctcgccctg acagcgtccg agtccgcgtc
     3181 gctcgtggcg caggcggcgg cgagcggcct ggtctgcgcg gtca
//
LOCUS       DATDDI010000542         3043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_261924, whole genome shotgun sequence.
ACCESSION   DATDDI010000542 DATDDI010000000
VERSION     DATDDI010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261924"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..1010
                     /locus_tag="VIU37_07785"
     CDS             99..1010
                     /locus_tag="VIU37_07785"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY6013891.1"
                     /translation="MSPLIIGLVAISAVLHVAWNVRLKTAGDALRAATIGMLAAGVVI
                     VPGGLAAWWIGGAHPLPVDGLALGVGSGIVEAAYFIFLAAAYRRGDLSVVYPLARGTA
                     PLLAVAIGVGALGERLGVAGSLGVIGLLLGFLWLQRPWRALALARRGARGGAARRSVL
                     DSPVLFALLTGVTIATYTTIDRLGTRLIDPVPYAAILWATCSVVLVAWVAVVAGGDLF
                     RDGGDGARRAAVGGWLTLGAYLCILGALSVAPLSGVAPLRESATVFAAAWGSVRMGEA
                     ADRAEVGRRVGASVLIVGGALLLAFGG"
     gene            complement(1026..1952)
                     /locus_tag="VIU37_07790"
     CDS             complement(1026..1952)
                     /locus_tag="VIU37_07790"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY6013892.1"
                     /translation="MTDSSARANWLVFLGLGFMWGSSYLFIKLAVDDFGTFTLVALRL
                     AVGAALLWVVIRLAGQELPRQRRIYGHLLVMACVNIVIPFALITWAERSVDSSIAAII
                     TAAVPLFAIVIAPLILHDEPIRVNGVIGLAVGFAGVVVLVSRNLGSAGSDITGEIALL
                     GAALSYAIGAVYSRHNMRGVRPMIPAVFQVTFAMLIAGAIALVFEHPWDARPDAQAIF
                     SIAWLGLLGSGLAYLANFRLLAAWGATRTTLVAYVIPVVGIVLGFLVLHESIDVRLLI
                     GTGLVVGGVALVNSRYGRRRLFGRVPPQVEVT"
     gene            complement(2089..2877)
                     /locus_tag="VIU37_07795"
     CDS             complement(2089..2877)
                     /locus_tag="VIU37_07795"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6013893.1"
                     /translation="MRASIVWTILRREWQETVRNRLLMSTILVPPMILTIAPIALSGF
                     VGDRSLPPQFASQILTQRPDWAAFSRTELAGAFTVQQFLAFFLLMPAYIPLSIATFSI
                     IGEKQARSLEPVLAAPIRTAELLAGKAIAALVPGIVAGWATYLVFVSLSTLVYGPHLL
                     GVVTDPSWLTGVFVLGPAVGLSSVVAAVIVSSRVNDPRVAQQIGGVIIVPIIGVTLLQ
                     ATGTLLVGASGYLVLAALVLVISLIGLRIGVTLFDREAILTRWR"
BASE COUNT          452 a         1032 c         1138 g          421 t
ORIGIN      
        1 acgtcgggct gagccgcttc cgggccgcgt tctcgtgagg gccgcgcggg ccccgcaacg
       61 ccaggacggg gagcgaccgc ggcgggtacc gtccgctggt gagcccgctc atcatcggcc
      121 tggtcgccat ctccgccgtc cttcacgtcg cctggaacgt ccggctcaag accgccggcg
      181 acgcgcttcg tgcggccacg atcgggatgc tggcggccgg cgtcgtgatc gtgcccggcg
      241 gcctcgcggc ctggtggatc ggcggggcgc atccgctgcc ggtcgatggg ctcgcgctcg
      301 gcgtcgggtc cggcatcgtc gaggcggcgt acttcatctt cctcgccgcc gcgtaccgcc
      361 ggggcgacct gtcggtggtc tacccgctcg cccgggggac ggcgccgctg ctcgccgtgg
      421 cgatcggcgt cggggcgctc ggcgagcggc tcggcgtggc cggctcgctg ggggtgatcg
      481 ggctgctgct cgggttcctg tggctgcagc ggccgtggcg ggcgttggcc ctggcgcgtc
      541 gtggcgcgcg tggcggggcc gcgcgacgtt cggtcctgga cagcccggtc ctgttcgccc
      601 tcctgaccgg ggtgacgatc gcgacctaca cgacgatcga tcggctcggg acgcgcctga
      661 tcgatccggt cccgtatgcg gccatcctgt gggcgacgtg ttccgtggtc ctggtcgcgt
      721 gggtggccgt ggtcgccggc ggagacctgt tccgggacgg cggcgacggc gcccggcgcg
      781 cggcggtcgg tggctggctg accctgggcg cctacctgtg catcctgggc gccctgagcg
      841 ttgcgccgct gtcgggagtc gcaccgctcc gcgagtcggc gacggtcttt gccgccgcct
      901 ggggctcggt caggatgggc gaggccgccg accgggccga ggtcggccgg cgggtgggtg
      961 cgtccgttct gatcgtcggg ggcgcgctgc tgctggcatt cggcgggtag gccgtcggcc
     1021 ggtggctacg tgacctcgac ctgcggcggc acccgcccga agagccggcg ccggccgtac
     1081 cggctgttca cgagcgccac gccgccgacc accaggcccg tcccgatcag cagccggacg
     1141 tcgatcgact cgtggaggac gaggaagccg aggacgatcc cgacgaccgg gatgacgtac
     1201 gccacgagcg tggtccgcgt cgcgccccag gcggccagca gccggaagtt ggcgaggtag
     1261 gcgagccccg agccgaggag gccgagccag gcgatcgaga agatggcctg ggcgtccggg
     1321 cgcgcgtccc acgggtgctc gaagacgagc gcgatcgcgc ccgcgatcag catcgcgaag
     1381 gtcacctgga agacggccgg gatcatcgga cgcacgccgc gcatgttgtg ccgcgagtac
     1441 acggcgccga tcgcatagct cagcgcggcg ccaagcaggg cgatctcgcc cgtgatgtcg
     1501 gacccggccg atccgaggtt gcggctgacc agcaccacca ccccggcgaa cccgaccgcc
     1561 agcccgatca cgccgttcac ccggatcggc tcgtcgtgga ggatcagcgg ggcgatgacg
     1621 atcgcgaaga gcggcacggc cgcggtgatg atcgcggcga tcgacgagtc gaccgatcgc
     1681 tcggcccagg tgatcagcgc gaacgggatc acgatgttca cgcaggccat caccagcagg
     1741 tggccgtaga tccgtcgctg tcgcgggagc tcctggccgg cgagccggat gacgacccac
     1801 agcagcgcgg cgccgaccgc cagtcgaagc gccacgagcg tgaacgtccc aaagtcgtcg
     1861 accgcgagct tgatgaatag gtagctcgag ccccacatga agccgagccc caggaacacc
     1921 agccagttgg cgcgagcgga cgagtcggtc atcggggcat gataggggag tgttggccta
     1981 gggtcatagg ccaatttgct cgagacatcg agatcgggtc actcctgtca cggtggcgtg
     2041 gatacctgac agaacacgtc aggagtccca accgtttcct gcccgaggtc agcgccagcg
     2101 cgtcaggatc gcctcccggt cgaacagcgt cacgccgatc cgcagtccga tcaggctgat
     2161 gacgaggacc agggcggcca gcacgagata gccgctcgcc ccgacgagca gcgtcccggt
     2221 ggcctgcagc agcgtgactc cgatgatcgg gacgatgatc acgccgccga tctgctgggc
     2281 gactcgcgga tcgttgaccc gcgagctgac gatgaccgcc gcgaccaccg acgacagccc
     2341 gaccgccgga cccagcacga acacgccggt cagccagctc gggtcggtca ccacgccgag
     2401 gaggtgcgga ccgtagacca gcgtcgagag gctgacgaag acgaggtagg tcgcccagcc
     2461 ggccacgatc cccgggacga gcgcggcgat cgccttgccc gccagcagct cggcggtccg
     2521 gatgggcgcg gccaggacgg gttcgaggct gcgcgcctgc ttctcgccga tgatcgagaa
     2581 cgtggcgatc gacaacggga tgtaggccgg catcaggagg aagaacgcga ggaactgctg
     2641 gacggtgaac gcgccggcga gctcggtgcg gctgaaggcg gcccaatcgg ggcgctgggt
     2701 caggatctgg ctggcgaact gcggcggcag cgaccgatcg ccgacgaagc cggacagcgc
     2761 gatcggcgcg atcgtcagga tcatcggcgg caccaggatg gtggacatca gcaggcggtt
     2821 ccggacggtt tcctgccact cgcggcgaag gatcgtccag acgatcgagg cccgcatcag
     2881 gcggcctcgt cgccttcggg ccgcacgccc atgacgtcga agtagatctg ctcgaggctg
     2941 gttgcgcgct cgcgcacggc gacgatctcc gacccggcgg cgacgagcgc gcgaacgagc
     3001 gccggggcaa ccgctcgcgg ttcggcggcg ctcacgatga gcc
//
LOCUS       DATDDI010000543         2101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_136950, whole genome shotgun sequence.
ACCESSION   DATDDI010000543 DATDDI010000000
VERSION     DATDDI010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136950"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VIU37_07800"
     CDS             complement(<1..208)
                     /locus_tag="VIU37_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008726798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013894.1"
                     /translation="MTAIIQLEKLTKSYGVHRGIIDVDLAVEQGDVFGFLGPNGAGKT
                     TTIRTSLDLIRPTSGRALIFGINSS"
     gene            complement(231..914)
                     /locus_tag="VIU37_07805"
     CDS             complement(231..914)
                     /locus_tag="VIU37_07805"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY6013895.1"
                     /translation="MARTLDPAAHALRRDEFIDAAQRLIQTRGYEQMSIQDVLDELGA
                     SKGAFYHYFGSKEDLLTAVVDQMIDGAMGVVEPMVADPSLTAPEKFRRVFAGIAQFKS
                     ARIELLQGVIQAWISDDNAIVREKFRKVAVQRMAPLMARIVEQGRAEGVYTAGPAGPV
                     ARVLLSLMLGANEAAVELYVARRAGTVTFETVQQTLAAYGEAFDRIVGAPGGSFPITD
                     EATLRVWFD"
     gene            1051..1419
                     /locus_tag="VIU37_07810"
     CDS             1051..1419
                     /locus_tag="VIU37_07810"
                     /inference="COORDINATES: protein motif:HMM:NF037170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6013896.1"
                     /translation="MLRDSQAFSGFSSSDIGAARTFYADKLGLEVTEERGMLTLHLAG
                     GGRVLIYPKENHEPATFTVLNFPVDDIDRAADELIAAGVRFERYDGMTQDERGIARGN
                     GPDIAWFKDPAGNILSILTG"
     gene            1529..1918
                     /locus_tag="VIU37_07815"
     CDS             1529..1918
                     /locus_tag="VIU37_07815"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY6013897.1"
                     /translation="MPSDANPSGPAGDVRARDVDHYRRHAEICRVLTDPKRLTLLDAL
                     RGGERSVGDLAVAIGVALPNASQHLAVLRAAGLVGARRSGTTVFYRLAEPAIVEACDV
                     IDRIVRRRVASQPGRGADGVPATVPAR"
     gene            1921..>2101
                     /locus_tag="VIU37_07820"
     CDS             1921..>2101
                     /locus_tag="VIU37_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013898.1"
                     /translation="MSTLSAFTFGIRVHASVPITRQRVEGALRAEGFGVLTEIDVQAT
                     MKAKLGIDQEPFLILG"
BASE COUNT          324 a          751 c          687 g          339 t
ORIGIN      
        1 cgctcgagtt gatgccgaag atcagggcgc gcccgctggt cgggcggatc aggtccagcg
       61 aggtccggat cgtggtcgtc ttcccggcgc cgttcggccc gaggaacccg aacacatcgc
      121 cctgctccac ggccaggtcg acgtcgatga tcccgcgatg gaccccgtac gacttggtga
      181 gcttctcgag ctggatgatc gcagtcatgc cgtacctttc cttgccttcc tcagtcgaac
      241 cacactcgca atgtcgcttc gtcggtgatc gggaacgacc cgcccggagc cccgacgatc
      301 cggtcgaatg cctcgccgta cgccgccagc gtctgctgga cggtctcgaa ggtgacggtc
      361 cccgcccgcc ttgccacgta gagctcgacg gccgcctcgt tggccccgag catcagcgac
      421 agcagcaccc gcgcgaccgg cccggctggg cccgccgtgt agacgccctc agcccgcccc
      481 tgctcgacga ttcgagccat gagtggcgcc atccgctgga ccgccacctt ccggaacttc
      541 tcgcgcacga tggcgttgtc gtcggagatc catgcctgga tgacgccctg aagcagctcg
      601 atcctggcgc tcttgaactg ggcgatcccg gcgaagacgc gtcggaactt ctcgggcgcc
      661 gtcaggctgg gatcggcgac catcggctcc acgacgccca tcgctccgtc gatcatctgg
      721 tcgacgaccg ccgtcagcag gtcctccttc gacccgaagt agtggtagaa ggcgcccttc
      781 gacgcgccga gctcgtcgag cacgtcctgg atgctcatct gctcgtagcc gcgcgtctgg
      841 atcaggcgct gggcagcgtc gatgaactcg tcacgccgga gcgcgtgagc cgctggatcg
      901 agggttctgg ccaccgttct ccattgatag accgaccgtc ggtcttatat tatggcggat
      961 gtcaaggctg cgtcgcagcg atgagtcgcg gggccctgcg gcgtctgtcc cgcagacatc
     1021 ggcgcacgtc gtcggagaaa ggagcgactc atgctcaggg acagccaggc gttctccggg
     1081 ttctcgtcca gcgacatcgg tgcggcgagg acgttctacg cagacaagct cggcctcgag
     1141 gtgaccgagg agcgcggcat gctgaccctc cacctcgccg gtggggggcg ggtcctgatc
     1201 taccccaagg agaaccacga gccggcgacg ttcaccgtcc tcaacttccc ggtcgacgac
     1261 atcgaccgcg ccgccgacga gctgatcgcc gcaggcgtcc ggttcgagcg ctacgacggg
     1321 atgacccagg acgagcgcgg gatcgctcgc ggcaatggcc cggatatcgc ctggttcaag
     1381 gatcccgccg ggaacatcct gtcgatcctg accggctagg gccaggcggc cgccacccgg
     1441 gtcccggcgc gggggccggc cctcatgacc ggatgacgac gttgctcagc cacttgcgca
     1501 atcatgcaag tagcgctaca gtccgggcat gcccagcgac gcgaatccat cgggaccggc
     1561 aggggacgtc cgagcccggg acgtcgacca ctaccgccgt cacgccgaga tctgccgggt
     1621 cctcacggac cccaagcgcc tgacgctcct cgatgccctg cggggcgggg aacgctcggt
     1681 cggcgacctg gccgtggcga tcggcgtcgc cctcccgaac gcgagccagc acctggcggt
     1741 ccttcgcgcg gccgggctcg tcggcgcgcg ccgatcgggc accaccgtct tctatcggct
     1801 cgccgagccg gccatcgtcg aggcctgcga cgtcatcgac cgcatcgtcc gccgacgcgt
     1861 cgcgtcccag ccgggccgtg gcgccgacgg cgttccggcc accgtacctg cgaggtgacc
     1921 atgtcaacgc tcagcgcctt cacctttggc atccgcgtcc acgcgtccgt gccgatcacc
     1981 cgccagcgcg tggagggggc gctccgggcc gagggcttcg gggtgctcac cgagatcgac
     2041 gtccaggcca cgatgaaggc gaaactcggg atcgaccagg agccgttcct gatcctcggg
     2101 g
//
LOCUS       DATDDI010000544         2105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_219920, whole genome shotgun sequence.
ACCESSION   DATDDI010000544 DATDDI010000000
VERSION     DATDDI010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219920"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VIU37_07825"
     CDS             <1..657
                     /locus_tag="VIU37_07825"
                     /inference="COORDINATES: protein motif:HMM:NF024245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEY6013899.1"
                     /translation="AAPSGIPRSAVLAALGTVLLAIAAFLLAFGSGAGGPASAGVGTP
                     EAFDSVSAGRSGAPNDGLAGPVDGTPGLVVEVVGAVDKPGVYRLPAGSRIGDLIDAAG
                     GYGPRVDTDRAGHELNLAAPLRDGDQVRVPSRDDAVAAGLPSHAAAPGAGGDPALVDL
                     NHATATELDALPGIGPVTAAKIIAAREDQPFASVDDLRTRKLVGEKTFANLNGLVTVR
                     "
     gene            659..>2105
                     /locus_tag="VIU37_07830"
     CDS             659..>2105
                     /locus_tag="VIU37_07830"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEY6013900.1"
                     /translation="MGRSARIALGAIAAAVAADQVGGRYVAAAVALVVAALLLVGELD
                     AGRRSRPAWPVVVGAGIIAVRLAVGQPGSTPLSEPPPGEGPWRLVVLATGSPREGHQS
                     VTLATPPGSTPAFAVAATLPRYPDLIAGDRVTVAGRIRPRPDSPFGDYLARIGVVGTL
                     TSPTLEVGSPPTDPGRRLEELRRTAGEALARVLPEPEAGLAAGILIGLRDRVDRDLAA
                     AFTTAGVSHVVAISGWNIAIVAAAVASVAGRLGRRRRSVVTMLAIAAYVAFAGASASV
                     VRAALMAGVVLLARETGRAGRAAAALGWAAILLLVADPRLIRDAGFQLSSLATAGLIA
                     WATPLTDWIESAGRGRVPRWLSESLGVSLAAQAATLPIVLASFGRLAILAPAVNLAVV
                     PLVAPAMAVGIVALAGGVLVLAGAPAVVGAVLAAPGWVILRLLDAIVTGAASAPFASL
                     DLAPPLDLVAAAVSIAGLVGLTWWRRRGSGRG"
BASE COUNT          211 a          794 c          795 g          305 t
ORIGIN      
        1 gctgccccgt ccggcatccc acgatcggcg gtgctcgcgg cgctgggcac cgtgctcctc
       61 gcgatcgcgg ccttcctgct ggcgttcggc agcggggccg gcgggccagc gtcggccggc
      121 gtcgggacgc ctgaggcgtt cgactcggtc tcggccgggc gctccggcgc gccgaatgac
      181 ggcctggcgg gtcccgtcga cggcacaccc ggactggtcg tcgaggtcgt cggcgcggtc
      241 gacaagccgg gcgtctaccg gttgcccgcc gggtcccgca tcggcgacct gatcgacgcg
      301 gccggcggat acggcccgcg agtcgacacg gaccgggccg ggcacgaact gaacctcgcg
      361 gcaccgctgc gggacggcga ccaggtgcgg gtgccgtcgc gcgacgacgc ggtcgcggcg
      421 ggattgccga gccacgccgc ggccccagga gccggcggcg atccggcgct cgtggatctc
      481 aatcacgcga ccgctacgga gctcgacgca ctcccgggga tcggcccggt gacggcggcc
      541 aagatcatcg cggcgcgcga ggaccaaccc ttcgcgagcg tcgatgacct tcgcacgcgg
      601 aagctggtcg gcgagaagac gttcgccaac ctcaacggtc tcgtgacggt gcggtgacgt
      661 gggtcgcagt gctcgcatcg cgctcggtgc catcgccgcg gccgtggccg ccgatcaggt
      721 cggcgggcgc tacgtggcgg ccgccgtggc gctcgtcgtc gcggcgttgc tcctggtcgg
      781 tgagctggat gccggccgcc gatcccggcc ggcatggccg gtggtcgtgg gcgccgggat
      841 catcgccgtg cgcctggccg tcggacagcc cgggtcaacg cccctgagcg aaccgccgcc
      901 gggcgaaggg ccctggcgcc tggtggtcct tgccaccgga tctccgcgcg agggccacca
      961 gtcggtgaca ctggcgacgc caccggggtc cacgcccgca ttcgccgtcg ctgccacgct
     1021 cccccgctac cccgacctga tcgccgggga tcgggtcacc gtcgcgggac gcatcaggcc
     1081 gcggccggat tcgccgttcg gcgactacct cgccaggatc ggggtcgtcg ggaccctgac
     1141 ctcgccgacg ctcgaggtcg ggtcgccgcc caccgatccc ggccgccgcc tcgaagagct
     1201 gcgccgcacg gccggcgagg cgctcgcccg ggtgctgccc gagcccgagg ccggcctcgc
     1261 ggccggaatc ctcatcggcc tgcgcgaccg ggtcgaccgg gacctcgcgg cggccttcac
     1321 gacagccggg gtcagccacg ttgtcgccat ctcgggctgg aacatcgcca tcgtcgcggc
     1381 cgcggtggcg tccgtcgccg gccggttggg acggcgacgc cgatccgtgg tcacgatgct
     1441 ggccatcgcg gcctacgtcg ccttcgccgg ggcttccgcg tccgtcgtgc gggccgccct
     1501 gatggccggc gtcgtgctcc tcgcccggga gaccggacgg gcgggccgtg ccgcggcggc
     1561 gctcggctgg gcggcaatcc tgctcctcgt cgccgacccc cggctgatcc gcgacgccgg
     1621 attccagctc tcctcgctgg cgaccgcggg gctgatcgcg tgggccacgc ccctgaccga
     1681 ctggatcgag tccgccggtc gcggtcgcgt gccgcgctgg ctgtcggaga gtctcggcgt
     1741 gtcgctggcc gcccaggccg ccacgctccc gatcgtcctg gcctcgttcg gccgactggc
     1801 gatcctcgcg cccgcggtca acctggccgt ggtgcccctc gtggcgccgg cgatggcggt
     1861 gggaatcgtg gcgctcgccg gtggcgtgct cgtcctggcc ggtgcgccgg cggtggtcgg
     1921 tgcggtgctt gccgccccgg gctgggtgat cctgcggctc ctcgacgcga tcgtcacggg
     1981 cgccgcttcg gcgccgttcg ccagcctcga tctcgcgcca ccactcgatc tcgtcgccgc
     2041 cgcggtctcg atcgccgggc tggtcgggct gacctggtgg cgccggcgcg ggagtggcag
     2101 aggag
//
LOCUS       DATDDI010000545         1926 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_53644, whole genome shotgun sequence.
ACCESSION   DATDDI010000545 DATDDI010000000
VERSION     DATDDI010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53644"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VIU37_07835"
     CDS             complement(<1..416)
                     /locus_tag="VIU37_07835"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6013901.1"
                     /translation="METHAPTTPTTFDPTADPRWALVSTSPYPLLIDGKLVPAADGAV
                     FPAISPRDNEPVAKIAQAGPADVTAAVGAARAAFDEGPWGRTTAKDRSAYLLRIADLI
                     EQHADELAFLESIDAGKPISSVHYSDLPISLDSLRY"
     gene            complement(487..1254)
                     /locus_tag="VIU37_07840"
     CDS             complement(487..1254)
                     /locus_tag="VIU37_07840"
                     /inference="COORDINATES: protein motif:HMM:NF013916.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013902.1"
                     /translation="MKRRMHRLLKDDGRILIVAMDHTAFMDAPVDGLAKYGQTCAAVV
                     PAGADAFLSPIGSILAFQEQIGSAAAIASFDTTPPFLEVAVERALSVGADAVKSMLYP
                     FTNDESIRQAARLAADASKFGLPYIAESVPGGFAAMDMHTPDKIAAGARISAETGADM
                     IKTFYTGDPETMRKVVEYAMVPVVILGGAKKGSVRELYQDVYDAINLAGVAGVAIGNN
                     IWRDPDPAGITRGLAAIIHGGASVDEALEAGGQLVHS"
     gene            complement(1294..>1926)
                     /locus_tag="VIU37_07845"
     CDS             complement(1294..>1926)
                     /locus_tag="VIU37_07845"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY6013903.1"
                     /translation="VYRVGDAEYGVAALTEPLSCAIHATRLLDLYVGQDVVVLGAGVM
                     GLMNVIAAKQHGARVIVSEIDPGRLAMAKRMGATELIDATQVDPVARVKELTEGRGAE
                     AVIAAIGHEKANEQGMAMLSDRGRFVLFAAAHPEPAFTLMPNEMHNRETGVFGVISGE
                     KQDFYAATRLIRYGLVDLSPLIDVTYPLEEIGAALEQAIKPGTYRVVVEL"
BASE COUNT          264 a          632 c          725 g          305 t
ORIGIN      
        1 aagtagcgca gggagtcgag gctgatcggg aggtccgagt agtggaccga gctgatcggc
       61 ttgcccgcgt cgatcgactc gaggaaagcg agctcgtcgg cgtgctgctc gatgaggtcg
      121 gcgatcctga ggaggtaggc gcttcggtcc ttcgcggtgg tccggcccca cggcccctcg
      181 tcgaacgcgg cgcgagcggc gcctaccgcg gcggtgacgt cagccggacc ggcctgcgcg
      241 atcttcgcga cgggctcgtt gtcgcgcggg ctgatcgccg ggaagaccgc gccatcggcg
      301 gccggcacga gcttgccgtc gatgagcagg ggatagggcg acgtgctgac gagcgcccag
      361 cgcggatccg ctgtcggatc gaaggtcgtg ggggtggtgg gtgcgtgggt ctccatggcg
      421 gacctccgat cgggagcggt gtcgggcgcc gcctcgggga acggcgcccg accgggtggt
      481 tcgagctcag ctgtggacga gctggccgcc ggcctcgagc gcctcgtcga ccgacgcgcc
      541 gccgtggatg atcgccgcca ggccgcgggt gatgccggcc gggtcgggat cgcgccagat
      601 gttgttgccg atcgccacgc cggcgacacc ggcgaggttg atcgcgtcgt agacgtcctg
      661 gtagagctcg cggaccgagc ccttcttcgc gccgccgagg atgacgacgg ggaccatcgc
      721 gtactcgacg accttgcgca tcgtctcggg atcgccggtg tagaaggtct tgatcatgtc
      781 cgcgccggtc tcggcgctga tccgggcccc ggccgcgatc ttgtcgggcg tgtgcatgtc
      841 catggccgcg aagccgcccg gcaccgactc ggcgatgtac ggcaggccga acttcgacgc
      901 gtcggccgcg aggcgggccg cctgccggat cgactcgtcg ttggtgaacg ggtagagcat
      961 cgacttcacg gcatcggcgc cgaccgacag cgcgcgctcg accgcgacct cgaggaacgg
     1021 cggggtcgtg tcgaacgagg cgatcgccgc cgccgacccg atctgctcct ggaaggccag
     1081 gatcgagccg atcggggaga ggaatgcgtc ggccccggcc gggaccaccg cggcacacgt
     1141 ctggccgtac ttcgcgagcc cgtcgacggg ggcgtccatg aacgcggtgt ggtccatcgc
     1201 gacgatgagg atccggccgt cgtccttgag cagccgatgc atcctgcgct tcatgcctgg
     1261 tctccttcag cctggtggtg gggttcgagg ggcctacagc tcgacgacga cgcggtacgt
     1321 gccgggcttg atcgcctgct cgagggccgc gccgatctcc tcgagggggt aggtgacgtc
     1381 gatgagtggc gacaggtcca cgagcccgta gcggatcagc cgggtcgcgg cgtagaagtc
     1441 ctgcttctcg ccggagatga ccccgaagac gcccgtctcg cggttgtgca tctcgttggg
     1501 catgagcgtg aaggcgggct ccgggtgggc cgccgcgaag aggacgaacc ggccgcggtc
     1561 gctgagcatc gccatgccct gctcgttggc cttctcgtgc ccgatcgccg cgatgacggc
     1621 ctcggcaccg cggccctcgg tcagctcctt gacccgggcg accgggtcga cttgggtggc
     1681 gtcgatgagc tcggtcgcgc ccatccgctt ggccatcgcc aggcggccgg gatcgatctc
     1741 gctgacgatg acccgcgcgc cgtgctgctt cgcggcgatg acgttcatga ggcccatgac
     1801 gccggcgcca aggacgacga cgtcctggcc gacgtacagg tcgagcagcc gcgtggcgtg
     1861 gatcgcgcac gacagcggct cggtcagggc cgccacgccg tactcggcgt cgccgacgcg
     1921 gtagac
//
LOCUS       DATDDI010000546         2339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_656986, whole genome shotgun sequence.
ACCESSION   DATDDI010000546 DATDDI010000000
VERSION     DATDDI010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_656986"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1200
                     /locus_tag="VIU37_07850"
     CDS             <1..1200
                     /locus_tag="VIU37_07850"
                     /inference="COORDINATES: protein motif:HMM:NF019292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HEY6013904.1"
                     /translation="ALAATWASQVERIRTVRPPLADRLAALATAPWPGLPLFAVVTIA
                     TFLALIVVGGALSSALSAAWTATVSPALASAVGAVVPNAALGRAVLWAIDGGLLAMVS
                     VGIPYILTFYVVLAALEDSGYLASTAVLSDRVFNALGLPGRAAIPLLAATGCNVPAIY
                     ATRVLHSRRERLLASFLVSLTPCSASSAVIVAALAPYLGMGAALGAFAVIAGVAIVAG
                     LGANAILPGRQSPLVLELPPLRLPIPRQVVAKAWHRFRSFVTTATPVMLGGSLLIGAL
                     YETGAIRPLEAILAPVSTGLLGLPPVAGIALALAVLRKELALQLLLTLAIAQFGLGAR
                     SLISFMNPGQLFVFAVVTGLSVPCVATIGALVGEFGWRRALVVSGATLATAVMTGAVV
                     ARVVGVA"
     gene            complement(1281..>2339)
                     /locus_tag="VIU37_07855"
     CDS             complement(1281..>2339)
                     /locus_tag="VIU37_07855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY6013905.1"
                     /translation="TYRVLVQDYGKIYASGYYSTAGYVFSKRLATPVAVGTTTVTGIS
                     VALPAGASIAGTVTDSLGAPVEGISAAACLTTDLLSCAFDFTMTDGSYSITRLPAGSY
                     YVIFQDAAAEHPAGYYSTAGFTGDSSQATPVVVGATGATGIDAKFPVGRIVSGVVTGA
                     TGAPVSVDVSDCTGTICMQLMTTGTDGAYAVNLAPGKHYLHVSDRTGANLSGYYSTAG
                     LANGAHATALTIDATDLAGINIKLGRIVGGIHPGTTHSGKYVTSTVVAKGTYATARFN
                     VGKTFAGSKVAILRAVKSSSGTWSTYKKVATVVVATDGYAYYSAKISGSLGFKASATD
                     ALLPAVQVNSAPVFARSK"
BASE COUNT          267 a          835 c          838 g          399 t
ORIGIN      
        1 gcgctggccg ccacgtgggc ctcgcaggtg gagcgcatcc ggaccgtgcg cccgccgctc
       61 gccgaccggc tcgcagccct cgccaccgcg ccgtggcccg gcctgccgct gttcgcggtc
      121 gtcacgatcg ccacgttcct cgccctcatc gtggtcgggg gggcactctc gagcgccctg
      181 tcggcggcct ggacggcgac cgtctcgccg gcactggcct ccgcggttgg ggccgtggtc
      241 ccgaacgccg ccctcggccg ggcggtgctg tgggcgatcg acggcggcct cctcgctatg
      301 gtctcggtcg ggatcccgta catcctcacg ttctacgtcg tcctcgccgc gctcgaggac
      361 tccggctacc tcgccagcac ggccgtcctg tccgaccggg tcttcaacgc cctggggctc
      421 ccgggacggg cggcgatccc gctgctggcc gccaccggct gcaacgtgcc ggccatctac
      481 gccacgcgcg tcctccacag ccggcgtgag cggctcctgg cctcgttcct cgtgtcgctg
      541 acgccgtgct cggccagctc ggcggtgatc gtggcggcgc tcgccccgta cctcggcatg
      601 ggtgcggcgc tgggcgcgtt cgcggtgatc gcgggcgtgg cgatcgtcgc gggcctcggc
      661 gccaacgcga tcctgcccgg ccgccagtcg ccgctggtgc tcgagctccc gccgcttcgc
      721 ctcccgattc cgcggcaggt cgtggccaag gcgtggcacc ggttccgttc gttcgtcacg
      781 accgccacgc cggtcatgct cggcggctcg ctcctgatcg gcgcgctcta tgagacgggg
      841 gcgatcagac cgctggaagc gatcctggcg cccgtctcga ccggcctgct cggcctccct
      901 ccggtcgccg ggattgcgct ggcgctggcg gtcctgcgca aggagctggc cctgcaactg
      961 ctgctcaccc tcgcgatcgc gcagttcggt ctcggtgccc ggagcctgat ctcattcatg
     1021 aatccgggcc agctgttcgt gttcgcggtc gtgaccgggc tgtccgtccc gtgcgtggcc
     1081 acgatcggcg cactggtcgg agagttcgga tggcggcggg cgctcgtcgt cagcggcgcc
     1141 acgctggcca cggccgtcat gaccggcgcg gtcgtcgctc gggtcgtcgg ggtcgcctag
     1201 gcccgccgag ggtcaccgtc gggtgagtgg tcgtggcctc aggcagcgag cccgaggcca
     1261 cgaccgccgt tccgggccgg ctacttgctg cgagcgaaga ccggtgccga gttgacctgg
     1321 accgccggga ggagggcgtc ggtggcactc gccttgaagc cgagggaccc gctgatcttg
     1381 gcgctgtagt aggcgtagcc gtcggtcgcg accacgacgg tcgccacctt cttgtacgtc
     1441 gaccacgtcc cactgctgct cttgacggcc cgcaggatcg cgaccttgct gccggcaaac
     1501 gtcttgccca cgttgaaccg cgcggtggcg tacgtgccct tggcgacgac cgtgctcgtc
     1561 acgtacttgc cgctatgggt ggttccggga tggatcccac ccacgatccg gccgagcttg
     1621 atgttgatcc cggcgaggtc ggtcgcgtcg atcgtcagcg ccgtcgcatg tgccccgttc
     1681 gccaggccgg cggtcgagta gtagcccgac aggttggcgc cggttcgatc ggagacgtgc
     1741 aggtagtgct tgcccggggc gagattgacc gcgtaggccc catcggtccc cgtggtcatg
     1801 agctgcatgc agatggtgcc ggtgcagtcg ctgacgtcga cgctcaccgg ggcgcccgtc
     1861 gcgcccgtca cgacgccgga gacgatccgt ccgaccggga acttggcgtc gatcccggtg
     1921 gcgcccgtgg cgccgaccac gaccggcgtc gcctgcgacg agtcgccggt gaagcccgcc
     1981 gtgctgtagt agccggccgg gtgctcggcc gcggcgtcct ggaagatcac gtagtacgac
     2041 ccggccggga gtcgcgtgat gctgtagctg ccgtccgtca tggtgaagtc gaatgcgcac
     2101 gagagcaggt ccgtggtcag gcaggccgcg gcgctgatgc cctcgaccgg cgcgcccagg
     2161 ctgtcggtca cggtgcccgc gatcgaggcg ccggcgggca gcgccaccga gatgccggtg
     2221 acggtcgtcg tcccgacggc gacgggtgtc gcaagccgct tcgagaacac gtagccggcg
     2281 gtcgagtagt aacccgacgc gtagatcttg ccgtagtcct ggacgaggac ccggtaggt
//
LOCUS       DATDDI010000547         1904 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_386741, whole genome shotgun sequence.
ACCESSION   DATDDI010000547 DATDDI010000000
VERSION     DATDDI010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386741"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /gene="sdhC"
                     /locus_tag="VIU37_07860"
     CDS             <1..344
                     /gene="sdhC"
                     /locus_tag="VIU37_07860"
                     /inference="COORDINATES: protein motif:HMM:TIGR02970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HEY6013906.1"
                     /translation="GIGMLAWAFHRISGVAIWAFVLLHVIDIYLVGGNPKAYDELLAI
                     YASPIGRVLEALLGAALLYHALNGLRIIVMDFWPALTRYQRQMWLTNWVIFAVLGAVV
                     SYFIFKPLWGG"
     gene            346..738
                     /locus_tag="VIU37_07865"
     CDS             346..738
                     /locus_tag="VIU37_07865"
                     /inference="COORDINATES: protein motif:HMM:NF013307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013907.1"
                     /translation="MSRSAYRRAKPQGGGFELAVWYLMRLTGVALFVLALTHYLILHV
                     LYDPALQNADWITTVRWSSLFWRAFDWTLLMMVLFHAFMGVRTVIGDYTRGGVRTGLT
                     MALYLMAIGLFVMGTVVVLTLPKVVPAG"
     gene            744..>1904
                     /locus_tag="VIU37_07870"
     CDS             744..>1904
                     /locus_tag="VIU37_07870"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6013908.1"
                     /translation="MRIDHDALIVGAGGAGLWAAVELARAGVDAAVLTKLYPTRSHTG
                     AAQGGVCAALGNLEEDHWEWHMFDTIKGGDYLTDQDVAEVLAREAIETVIELEHMGLP
                     FNRTPDGKIDQRRFGGHTRNFGEGPVRRACFAADRTGHMILQTLYQQAIKYGVKFYDE
                     YHVVDLLSEGGDLGSGGRSAGVVAYRIADGELHTFRSKAVLLATGGFGRMFRITSNAW
                     SLTGDGVSLAYRHGVPMEDMEFYQFHPTGIVGLGILLSEAARGEGGYLLDNDGHRFMD
                     RYAPKLMELAPRDMVSRAMYQEIRAGRGIDGKDYVYLDLRHLGRKLIEEKLPDITEFA
                     RVYQGVEPITEPVPVQPTAHYAMGGIPTDIATRVIRDEANTVVPGLYAAGECA"
BASE COUNT          287 a          644 c          663 g          310 t
ORIGIN      
        1 gcgggatcgg gatgctcgcc tgggccttcc accggatctc cggggtcgcg atctgggcct
       61 tcgtgctcct gcacgtcatc gacatctacc tggtcggcgg gaacccgaag gcctacgacg
      121 agctgctggc gatctacgcc agcccgatcg ggcgcgtgct cgaggcgctc ctgggggcgg
      181 cgctcctgta tcacgccctc aacgggctgc ggatcatcgt catggacttc tggcccgcgt
      241 tgacccgcta ccagcggcag atgtggctga ccaactgggt gatcttcgcg gtcctcggtg
      301 cggtcgtctc gtacttcatc ttcaagccgc tgtggggcgg ttgagatgag ccgatcggcg
      361 taccggcgag ccaagccgca gggcggcggg ttcgagctgg cggtctggta cctgatgcgc
      421 ctgaccggtg tcgcgctgtt cgtcctggcg ctgacccact acctgatcct ccacgtgctg
      481 tacgacccgg cgctccagaa cgccgactgg atcaccacgg tccgctggag cagcctgttc
      541 tggcgggcgt tcgactggac cctgctgatg atggtcctgt tccacgcgtt catgggcgtc
      601 cggacggtga tcggcgacta cacccgcggc ggcgtccgga cgggcctgac gatggccctc
      661 tacctgatgg cgatcgggct gttcgtgatg ggcacggtcg tcgtcctgac ccttcccaaa
      721 gtcgtcccgg cgggctgaac ggcatgcgga tcgaccacga cgccctgatc gtcggagccg
      781 gcggggcggg actgtgggcg gcggtcgagc tcgcccgggc cggcgtcgac gccgcggtcc
      841 tcaccaagct ctatccgacg cgctcccaca ccggtgccgc ccagggcggg gtctgcgccg
      901 ccctcgggaa cctcgaggag gaccactggg agtggcacat gttcgacacg atcaagggcg
      961 gtgattacct caccgaccag gacgtggcgg aggtgctggc ccgcgaggcg atcgagaccg
     1021 tgatcgagct cgaacacatg ggccttccgt tcaaccggac gcccgacggc aagatcgacc
     1081 agcggcggtt cggcgggcac acccggaact tcggggaggg acccgtccgg cgcgcctgct
     1141 tcgccgccga ccggaccggc cacatgatcc tgcagacgct ctaccagcag gcgatcaagt
     1201 acggggtcaa gttctacgac gagtaccacg tcgtcgacct gctgtccgag ggcggcgacc
     1261 tgggctccgg cggccgctcg gccggcgtcg tggcctaccg gatcgccgac ggggagctgc
     1321 acacgttccg ctcgaaggcg gtgctgctcg cgaccggcgg gttcggacgg atgttccgga
     1381 tcacgtccaa cgcctggagc ctgaccggcg acggcgtgtc gctggcctac cgccacggcg
     1441 tcccgatgga ggacatggag ttctaccagt tccacccgac cgggatcgtc gggctcggga
     1501 tcctgctgtc ggaggcggcc cgcggcgagg gtggctacct cctagacaac gacggtcacc
     1561 ggttcatgga ccgctacgcg cccaagctga tggagctggc cccgcgcgac atggtcagcc
     1621 gggcgatgta ccaggagatc cgggcggggc gggggatcga cggcaaggac tatgtctacc
     1681 tggacctccg tcacctcggc cgcaaactga tcgaggagaa gctgcccgac atcaccgagt
     1741 tcgcgcgggt ctaccagggg gtcgagccga tcaccgaacc ggtgcccgtc cagccgaccg
     1801 cccattacgc gatgggcggg atcccgaccg acatcgcgac gcgggtcatc cgcgacgagg
     1861 ccaacaccgt ggtgcccggg ctctacgcgg cgggtgaatg cgcc
//
LOCUS       DATDDI010000548         1728 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_511504, whole genome shotgun sequence.
ACCESSION   DATDDI010000548 DATDDI010000000
VERSION     DATDDI010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511504"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..798)
                     /locus_tag="VIU37_07875"
     CDS             complement(103..798)
                     /locus_tag="VIU37_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013909.1"
                     /translation="MNQVLDSLVNDPTVGAIGLALAGTAVGLWLAAAWWTYTDMARRS
                     SSELARLTAVGWILLSSPALLLLSLPTYLLARPQATVAERRAQRLFQAIEPSMTEGRC
                     PTCASTVDADWRRCPACAAWLASACADCGEWSALDLESCPWCAGDKARGVATVDAERP
                     AAIAASASLGTAAGAEPAISRSGRRMGVPARPVAAPAGRRPNLAGQRGARDLRRTYGA
                     ERAAGSGRMRVGS"
     gene            complement(1069..1275)
                     /locus_tag="VIU37_07880"
     CDS             complement(1069..1275)
                     /locus_tag="VIU37_07880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013910.1"
                     /translation="MDDSLLQLMEELVASIELREAGDPDAPAWEAQRRIERLEEELAQ
                     RFRSGPQRSGLGVTAPDEVLAGSF"
     gene            complement(1352..>1728)
                     /locus_tag="VIU37_07885"
     CDS             complement(1352..>1728)
                     /locus_tag="VIU37_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013911.1"
                     /translation="GTVLLFRALAATGQAGPPSRTRPARSVARSVRVAVEATAAQLGN
                     TPAVARSAYVHPAVIDAYLDGGVRDAIVEAADVNPVPPRPPSPAEERAVLRLIGRRAR
                     REQERHRSARAGRRHAMESQGR"
BASE COUNT          205 a          663 c          645 g          215 t
ORIGIN      
        1 cgagctcggc cgccaggcgg cctacgagcg cggccgcgtc gagggcacga cccacccggt
       61 cgacgacacg gacgcctagg ccggccgaca ccgagggtcg gctcatgagc cgaccctcat
      121 ccgcccggag cccgcggctc gctctgcacc gtacgtgcgg cgcaggtcgc gggctccgcg
      181 ctgtccggcg agattcggtc ggcggccggc cggcgctgcg accggccgag ccgggacgcc
      241 catccgccgg ccgctccggc tgatcgccgg ctccgcaccg gccgccgtgc cgaggctcgc
      301 gctggccgcg atggcggccg gtcgctcggc gtcgacggtc gccacgcccc gggccttgtc
      361 accggcgcac cacgggcagc tctcgagatc gagcgccgac cactcgccgc agtccgcaca
      421 ggccgacgcc agccacgccg cgcaggcggg gcagcggcgc cagtcggcgt cgaccgtcga
      481 ggcgcaggtc gggcagcgac cctccgtcat ggacggctcg atcgcctgga acaggcgctg
      541 ggcccgccgc tccgcgaccg tggcctgggg tcgggcgagc aggtacgtgg gcagcgacag
      601 cagcagcagc gccgggctcg agaggaggat ccacccgacc gcggtcagcc gcgccagctc
      661 ggagctcgag cgccgggcca tgtcggtgta ggtccaccag gccgcggcga gccacagccc
      721 gaccgcggtg ccggcgaggg cgaggccgat ggccccgacg gtcggatcgt tcacgagcga
      781 atcgagcacc tggttcatcg ggccggcctt tctggtgcct ggaggacttg ccggctcgct
      841 cccgccgcag cggtcgcgga tcgcgccgct cagccagccg ggatctgccg tggccccagt
      901 ctccggctcg gccgtcaccg cgatgcgcct gcccgtcgtg ccgcgcttgc agatgcgtgt
      961 cgtggcctca gttcggcgcc cggtccgggc cgttggcctg cccgggtggt cgcctgccga
     1021 ccgcgccccc ctgtgcgcgg tcggcggcga ctcgaccccc acgtgacctt agaagctccc
     1081 ggcgaggacc tcgtccgggg cggtcacgcc gagccccgag cgctgcggcc cggatcggaa
     1141 gcgctgcgcc agctcctcct ccaggcgctc gatccgacgc tgggcctccc acgccggcgc
     1201 atcgggatcg cccgcctcgc gcagctcgat ggacgcgacg agctcctcca tcagttggag
     1261 cagggaatcg tccatccgaa cctccggcgg gccgcgctct cgggagcgtg acaatgccaa
     1321 gccgcggatt gcaggtccgt gctgggttgg gtcagcgacc ttgcgattcc atcgcatgcc
     1381 gccggcccgc tcgggcgctc cggtgtcgtt cctgctcccg tcgggcccgg cgaccgatca
     1441 ggcgaagcac ggcccgctcc tctgcggggg agggcggccg cggcggcacg gggttcacgt
     1501 ccgcggcctc gacgatcgcg tcgcgcacgc cgccatcgag gtaggcatcg atcacggccg
     1561 ggtggacgta cgcggagcgg gcgaccgccg gtgtgttgcc cagctgggcg gcggtggcct
     1621 cgacggcgac ccggacggat cgcgcgaccg agcgcgcggg tcgcgttcgc gaaggcggtc
     1681 cggcctgccc ggtcgcggcc agcgcccgga agaggaggac cgtcccgg
//
LOCUS       DATDDI010000549         1697 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_573815, whole genome shotgun sequence.
ACCESSION   DATDDI010000549 DATDDI010000000
VERSION     DATDDI010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573815"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1697)
                     /locus_tag="VIU37_07890"
     CDS             complement(<1..>1697)
                     /locus_tag="VIU37_07890"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6013912.1"
                     /translation="GLVLGLLAGGSLGNLASIRLRSAWLLAFAVVIRYGTEAVLNAQV
                     EQAEALRIPLLTTAFALLLVALWINRSYPGLSLAFVGILFNASVIVVNGGHMPIWEPS
                     LRAAGFLPDEISTTIHTLLPAELDASFLLHLGPLADVIPVPLPYIQNVASVGDAFLTA
                     GLAFFLFAGIVRVPQELTEEQLAAIRERLAGLTPSVRRAQVLYQAGVLETGLTPAIAD
                     SAALDRPFVLGGAGQRMTSPAAAAGSLAPEGAAPGIAIPGLPPEAVERVRQHPYVRLA
                     LNGSFSALWAGQLISLFGDRLNQIALVSVVLISTGSPLATGLVFVAATLPNLVLSPIA
                     GTFVDRWDHKETLIVSDILRAAIVLLLPMVAIMNVLLVYPMVFAVTTISIFFRPARAA
                     ILPQIVEERDLLTANSALWVCEALADNLGYPLAGVFVFTLGASVPLAFWVDSATYLAS
                     ATLLSTIIVAAVRAPQQGAAEPERLGLVREMRAGWAFLRGQQTLYANTIQAAIAQFTI
                     GITIALVPIYAFRVFEHSDLGWQAVYGFLETGIGVGNLVGGFVIGLIGARLAKGHMV"
BASE COUNT          310 a          552 c          624 g          211 t
ORIGIN      
        1 gaccatgtgg cccttcgcga gcctcgcgcc gatcagcccg atgacgaagc caccgaccag
       61 gttgccgacg ccgatcccgg tctcgaggaa cccgtacacg gcctgccagc cgaggtcgct
      121 gtgctcgaac acccggaacg cgtagatcgg cacgagggcg atcgtgatcc cgatcgtgaa
      181 ctgggcgatg gccgcctgga tcgtgttcgc gtacagcgtc tgctggccgc gcaggaaggc
      241 ccagccggcc cgcatctcac ggaccaggcc gagtcgctcg ggctcggccg caccctgctg
      301 cggagctcga acggccgcga cgatgatcgt cgacagcagg gtggccgagg ccaggtacgt
      361 ggcgctgtcc acccagaacg cgagcgggac ggacgccccg agcgtgaaga cgaagacccc
      421 ggccagtggg tagcccaggt tgtcggcgag cgcctcgcag acccacaacg ccgagttggc
      481 ggtcagcagg tctcgctctt cgacgatctg cggaaggatc gcggcacgtg ccggccggaa
      541 gaagatcgag atcgtcgtga ccgcgaagac catcgggtag acgagcagga cgttcatgat
      601 cgcgaccatc gggaggagca ggacgatggc ggcccgcagg atgtcgctga cgatcagcgt
      661 ctccttgtgg tcccagcgat cgacgaaggt tccggcgatc gggctcagca ccagatttgg
      721 cagggtggcg gcgacgaaca cgaggccggt ggcgagcggc gatccggtcg agatcagcac
      781 cacggagacg agggcgatct ggttgagccg atccccgaac agcgagatga gctggcccgc
      841 ccacagtgcg gagaacgagc cattgagggc caggcgcacg taggggtgct ggcggacccg
      901 ctcgacggct tccggtggga gcccggggat ggcgatgccc ggcgccgctc cctccggtgc
      961 cagggagccc gcggcggccg ccggcgacgt catccgctgc ccggcgccac ccaggacgaa
     1021 cgggcgatcc agggccgcac tgtcggcgat ggccggggtc aggcccgtct cgaggacgcc
     1081 tgcctggtag aggacctggg cgcggcggac cgacggggtc agccccgcga gacgctcgcg
     1141 aatggccgcg agctgctctt cggtcagttc ctggggaacc cgaacgatgc cggcaaagag
     1201 gaagaacgcc aatccggcgg tgaggaacgc gtcaccgacc gaggccacgt tctggatgta
     1261 cggcaacggg accgggatca cgtccgcgag cggccccagg tggaggagga aggaggcatc
     1321 cagttccgcc ggcaggagcg tgtggatcgt ggtcgagatc tcgtccggca ggaagcccgc
     1381 cgcgcgcagg ctcggctccc agatcggcat gtggccgccg ttgaccacga tgaccgaggc
     1441 attgaacagg atgccgacga aggcgaggct caagcccggg tacgaccgat tgatccagag
     1501 cgcgaccagc aggagcgcga aggcggtcgt cagcagcggg atgcgcagcg cctcggcctg
     1561 ctcgacctgg gcgttgagga cggcctcggt gccatagcgg atcacgaccg cgaaggcgag
     1621 cagccaggca ctccgcaggc ggatcgacgc caggttgccc aggctcccgc cggccagcag
     1681 cccgagcacg agtccga
//
LOCUS       DATDDI010000550         3679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_448717, whole genome shotgun sequence.
ACCESSION   DATDDI010000550 DATDDI010000000
VERSION     DATDDI010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3679
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448717"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VIU37_07895"
     CDS             complement(<1..186)
                     /locus_tag="VIU37_07895"
                     /inference="COORDINATES: protein motif:HMM:NF013201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013913.1"
                     /translation="MIELGANRYGKAAIHLVRVDRDPAGHRIRDLTVAIALEGDFERS
                     YTDGDNSLVIATDTMKNT"
     gene            complement(183..737)
                     /locus_tag="VIU37_07900"
     CDS             complement(183..737)
                     /locus_tag="VIU37_07900"
                     /inference="COORDINATES: protein motif:HMM:NF020907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEY6013914.1"
                     /translation="MTAAREAPLPPIERLDRLPAGVFAATMAPLFEGAPRFLDRLAKA
                     RPFGSLEVMFERARQIAHAMPVAEQLELIDAHPRLGAPPADVSPLSFVEQGYDRQPAA
                     AAADRDRVAAELVRLNAAYEDRFGFRYCVFVDGRTRAELLPGLAAALDAGRADEIDRA
                     LDAVIDSARDRAARLGTAAREETP"
     gene            complement(734..1591)
                     /locus_tag="VIU37_07905"
     CDS             complement(734..1591)
                     /locus_tag="VIU37_07905"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY6013915.1"
                     /translation="MPVEPPITSPRTLADAYAQLAEGPVTPIAGGTDLMVNLTGELGE
                     PPERMLDLWHLDELRGIALDGDALVLGALTTYTELRRSALCREHLPALVEAAATIGAA
                     QIQNRGTIGGNAANASPAGDTLPVMLALDATLVCGSVRGERDVPATAFWPAYRRTALA
                     PDELLVRIRFPLVADRISRFRKIGTRRAQSISKVVMALSYRGETDGGPWTDVRLALGS
                     VAPTPIRASGTEAVLEGRPPTPETAEQAAGTLAAELHPIDDVRSTAEYRRVVAARVLH
                     RLIREAGGW"
     gene            complement(1598..1840)
                     /locus_tag="VIU37_07910"
     CDS             complement(1598..1840)
                     /locus_tag="VIU37_07910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013916.1"
                     /translation="MSPEGDRIAVPTNGKHPHPVPGPEASAPVTPPAPPATVAGPFTP
                     TQLAVGFGILAAALTLLVGGLRRRSRASRPGRFGRR"
     gene            complement(1837..2337)
                     /locus_tag="VIU37_07915"
     CDS             complement(1837..2337)
                     /locus_tag="VIU37_07915"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY6013917.1"
                     /translation="MTAYRFAVNGAPVEVDVPGMRRLLDVLREDLALTGTEEGCGEGE
                     CGACTVLLDGSPVDSCLVPVCQVDGSTVLTVEGLAVAPTRPGRTDGLDELQAAFLVTG
                     GAQCGICTPGMLMAGRAYLDAGGGPDHDAIREAIAGNLCRCTGYTKIVEAIALAAVSH
                     DEGAVR"
     gene            complement(2334..>3679)
                     /locus_tag="VIU37_07920"
     CDS             complement(2334..>3679)
                     /locus_tag="VIU37_07920"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6013918.1"
                     /translation="YRCPNVRIRARATRTNTPPNGAFRGFGAPQVEFAAETHLNRIAE
                     ALGLSPLEIRRRNIYQLGDTTPTGQVLRESVAAGEVLERAAEASEFERLRGRPAPARQ
                     APSPSASGPAPASALLTGRERFASGVGLALAWHGAGFTGTGEVKLASVASLELTADGA
                     IRILTASTEMGQGSKTILPQLVAETLEIPADSVEAAVQDTAVVPDSGPTVASRTSMVV
                     GGLLIKAAQRLRAEVETATGGSFAVTYRDFARTHGPRRIDQRFEPYPDIAFDDETYRG
                     DAYPAFSWAACVARVDVDLDTGEVFVRDVVAADDVGRVIHPVLAEGQVEGGTLQAVGY
                     ATIEEIKLRDGRYLNDRLATYVIPTALDAPRITTILVEAPFSGAPHGAKGLGELPMDV
                     GAPAVVAAIADATGAWITDLPASPERILAALADAPMVAPPRAGASEPAPPPEPGR"
BASE COUNT          466 a         1341 c         1396 g          476 t
ORIGIN      
        1 ggtgttcttc atcgtgtcgg tggcgatcac gagcgagttg tcgccgtcgg tatacgaccg
       61 ctcgaagtcc ccttcgagcg cgatcgcaac ggtcaggtcg cggatccggt ggcccgccgg
      121 atcgcgatcg acccggacca ggtggatcgc ggccttgccg tagcggttcg caccgagctc
      181 gatcacggcg tctcctccct cgctgcggtc cccaggcgcg cggcgcgatc ccgggcgctg
      241 tcgatgaccg cgtccagcgc ccggtcgatc tcgtccgcgc gtccggcgtc gagcgcggcg
      301 gccaggccgg gcagcagctc ggctctcgtc cggccgtcga cgaacacgca gtagcggaac
      361 ccgaaccggt cctcgtacgc cgcgttgagc cggacgagct ccgcggccac ccgatcgcga
      421 tcggccgcgg cggcggccgg ctggcggtca tacccctgtt ccacgaacga cagcggtgaa
      481 acgtcggccg gcggggcccc caggcgcgga tgggcgtcga tcagctcgag ctgctcggcg
      541 accggcatgg cgtgggcgat ctgcctggcg cgttcgaaca tgacctcgag cgagccgaac
      601 ggccgggcct tcgcgagccg gtccaggaag cgaggcgcgc cctcgaacag cggcgccatc
      661 gtcgcggcga agaccccggc cgggagccgg tcgagccgct cgatcggcgg cagtggcgcc
      721 tcgcgggcgg ccgtcaccaa ccgcccgcct cgcggatcag gcgatggagg acgcgcgccg
      781 cgacgacgcg ccggtattcc gcggtggagc ggacgtcgtc gatcggatgg agctcggcgg
      841 cgagcgtccc ggccgcctgc tcggcggtct ccggagtcgg cggccggccc tcgaggacgg
      901 cctcggtgcc gctcgcgcgg atcggcgtcg gggccaccga gcccagcgcc aggcgaacat
      961 cggtccaggg gccgccgtcg gtctcgccgc gatagctgag ggccatcacg accttgctga
     1021 tcgactgggc ccgccgcgtc ccgatcttgc ggaaccgcga aatgcgatcg gccaccagtg
     1081 ggaaccggat cctgaccagc agttcgtcgg gggccagggc cgtgcggcgg taggcaggcc
     1141 agaacgcggt cgccggaacg tcgcgctcgc cgcggacgga accgcagacc agcgtcgcgt
     1201 cgagcgccag catgaccggc agcgtgtcgc cggccggcga ggcgttggcg gcgttgccgc
     1261 cgatcgtccc gcggttctgg atctgggcgg cgccgatggt cgcagccgcc tccaccagtg
     1321 ccggcaggtg ctcgcggcag agcgccgacc gacggagctc ggtgtacgtc gtcagcgcgc
     1381 cgaggacgag cgcgtcgccg tcgagcgcga tcccccggag ctcgtcgagg tgccacaggt
     1441 cgagcatccg ctcgggcggc tcgccgagct cgccggtcag gttgaccatc aggtccgtgc
     1501 ccccggcgat cggggtgacc ggaccttcgg cgagctgcgc gtaggcgtcg gccagcgtgc
     1561 gcgggctggt gatcggcggc tcgacgggca tggcgggtca gcgacgcccg aaccggcccg
     1621 gccggctggc gcggctccgg cggcgcagtc cgccgacgag cagggtgagc gccgccgcca
     1681 ggatcccgaa gcccaccgcg agctgcgtcg gcgtgaacgg gccggcgacc gttgcgggcg
     1741 gagccggcgg cgtgaccggc gcggacgcct ctggaccggg gaccgggtgc gggtgcttgc
     1801 cgttcgtcgg gaccgcgatg cggtccccct cggggctcat cggaccgcgc cctcgtcgtg
     1861 cgagaccgcg gccagggcga tcgcctcgac gatcttggtg tagccggtgc aacggcagag
     1921 gttgccggcg atcgcctcgc ggatcgcgtc gtggtcgggc ccgccgccgg cgtcgagata
     1981 ggcgcgcccg gccatcagca tccccggcgt gcagatgccg cattgggcgc cgccggtgac
     2041 gaggaaggcg gcctggagct cgtccaaccc gtcggtccgt ccgggtcgcg tgggcgccac
     2101 cgccagtccc tccacggtca ggacggtcga gccgtcaacc tggcagaccg ggaccaggca
     2161 cgagtccacg ggcgagccgt cgagcaggac cgtgcacgcg ccgcattcgc cttccccgca
     2221 gccctcctcg gtgccggtca gcgccaggtc ttcccgcagc acgtcgagga gccggcgcat
     2281 gcccgggacg tcgacctcga ccggggcgcc gttcaccgcg aaacggtacg cggtcatcgg
     2341 ccgggctccg gcggcggcgc gggttcggac gcgccggcgc gcggcggcgc gaccatcggg
     2401 gcatcggcca gcgcggccag gatccgttcg gggctggccg gcaggtcggt gatccaggcc
     2461 ccggtcgcgt ccgcgatcgc cgccacgacg gccggcgcgc cgacgtccat gggcagctcg
     2521 ccgaggccct tcgcgccgtg gggggcgccc gagaacggcg cctcgaccag gatcgtcgtg
     2581 atgcgcgggg cgtcgagcgc ggtcgggatc acgtacgtcg ccaggcggtc gttgagatac
     2641 cggccgtcgc gcagcttgat ctcctcgatc gtcgcgtagc cgacggcctg gagcgtgccg
     2701 ccctcgacct ggccctccgc cagcaccggg tggatcaccc ggccgacgtc gtcggcggcg
     2761 accacgtccc ggacgaacac ctcgcccgtg tcgagatcga cgtcgacccg ggcgacgcag
     2821 gcggcccagc tgaacgcggg ataggcgtcg ccgcggtagg tctcgtcgtc gaaggcgatg
     2881 tccgggtacg gctcgaaccg ctggtcgatc cggcgcggcc cgtgggtacg cgcgaagtcc
     2941 cggtacgtca ccgcgaagct gccgcccgtc gccgtctcga cctccgcgcg caaccgctgc
     3001 gcggccttga tcagcagccc accgacgacc atcgacgtcc gcgacgcgac ggttggcccc
     3061 gaatccggga cgaccgccgt gtcctggacc gccgcctcga ccgaatcggc cgggatctcc
     3121 agggtctccg cgaccagctg cgggaggatg gtcttgctgc cctggcccat ctcggtcgac
     3181 gcggtcagga tccggatggc cccgtcggcg gtcagctcca gcgacgcgac cgaggcgagc
     3241 ttgacctcgc cggtccccgt gaagcccgcg ccgtgccagg cgagggcgag gccgacgccg
     3301 ctggcgaacc gctcgcggcc ggtcagcagc gccgacgcgg gtgcgggtcc ggaggcggac
     3361 ggagacggag cctgacgtgc gggggccggc cggccgcgaa gccgctcgaa ctccgacgct
     3421 tccgcggcgc gctcgagcac ctcgcccgcg gccacgctct cgcgcaggac ctggccggtc
     3481 ggggtggtgt cgccgagctg gtagatgttg cgccgacgga tctcgagcgg gctcaggccc
     3541 agggcctcgg cgatccggtt gagatgcgtc tcggccgcga actcgacctg cggcgcgccg
     3601 aacccccgga acgcaccgtt gggcggcgtg ttcgtccggg tcgcccgggc gcggatccgg
     3661 acgttcgggc agcggtacg
//
LOCUS       DATDDI010000551         2521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_532286, whole genome shotgun sequence.
ACCESSION   DATDDI010000551 DATDDI010000000
VERSION     DATDDI010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_532286"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /gene="rsgA"
                     /locus_tag="VIU37_07925"
     CDS             complement(<1..666)
                     /gene="rsgA"
                     /locus_tag="VIU37_07925"
                     /inference="COORDINATES: protein motif:HMM:NF015170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase RsgA"
                     /protein_id="HEY6013919.1"
                     /translation="MPDDPALGALGWDPGWAEAFSPHAARGRRPARVVAVHRETSIVR
                     DGAGDRPATVSGSFRFEALATSDYPTVGDWVALDRDGVITAVLPRRSVFKRMATDGTR
                     NGSGLDDEQIMASNVDVALLVAGLDNDFNLRRIERYLAVAWSSAITPVVVLNKADLDG
                     DTEGRLVAVDAIAPGVAVVAVSAWTGAGLDDLLAHLRPGTTAAILGSSGVGKSTLVNA
                     LLGE"
     gene            complement(690..1676)
                     /locus_tag="VIU37_07930"
     CDS             complement(690..1676)
                     /locus_tag="VIU37_07930"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013920.1"
                     /translation="MPAGLRLRPFAGQPDLADIVRIENAEAEADHVPERVDIETLAVR
                     YAHPSPHFEPVRDVTIAEIDGRPVAVASREWVETTDGLREYRIDGVVDPSWRRRGIGA
                     ALLAENERRSRALARRDGEGVACVFGSWSGDSQPGDVALLTAAGFAPARFFFDMTRPS
                     LEAIPDQPLPGGLEIRPITNDLAPAVWHAQAEAFQDHWGGVDESEERLRRQLAQPSTD
                     LSLWIVAFDGDEVAGGVLNKIDAAENEAMGVERGWLGSVFTRRPWRRRGLAGALIVES
                     LRRLRQRGLTSAGLGVDADNPTGALQLYERLGFEVTYRSTAWRKHLEPEDRR"
     gene            complement(1711..>2521)
                     /locus_tag="VIU37_07935"
     CDS             complement(1711..>2521)
                     /locus_tag="VIU37_07935"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013921.1"
                     /translation="PLVTIVAHELKASYAFIERNFFLTRRYWGWEVAFLVYSVAGALS
                     ISLIGADQGSPTLLLTLMVGAIFWNYLSVVFSWIAETISVERWEGTLEYTMMAPIQRW
                     SQLLGSVLYAMVYGLVHTTVILIVLILFFPQLDLAGANPVTVLAFMLLGSFSFVGIGM
                     IAAILPLLYVERGAQMTFVLQSCLLLVSGVYYSVEILPPWMQVLSHLSPATYVLHGVR
                     AGLLKGTSVVDLFGDVWPLLVMGAVFIPFGLWAFGRAERYAKRTGKLKRVG"
BASE COUNT          421 a          875 c          885 g          340 t
ORIGIN      
        1 ctcaccgagg agtgcgttga ccagggtgga cttgcccacg cccgacgagc cgaggatcgc
       61 ggcggtcgtc cccggtcgaa ggtgagcgag caggtcgtcc agcccggcgc cggtccaggc
      121 cgagacggcg acgaccgcca cgccgggggc gatcgcgtcg accgcgacca gccgtccctc
      181 ggtgtcgccg tcgaggtcgg ccttgttcag cacgacgacc ggcgtgatcg cgctcgacca
      241 ggcgaccgcg aggtagcgtt cgatgcggcg caggttgaag tcgttgtcga ggcccgccac
      301 gagcagggcg acgtcgacgt tcgaggccat gatctgctcg tcgtcgaggc cgcttccatt
      361 ccgcgtcccg tccgtggcca tccgcttgaa gacgctccga cgggggagaa ccgccgtgat
      421 cacgccgtcg cgatcgaggg cgacccagtc gccgacggtc ggatagtccg acgtcgccag
      481 ggcctcgaac cggaacgagc ccgagaccgt ggccggccga tctcccgcgc catcgcggac
      541 gatcgacgtc tcgcgatgga cggcgaccac ccgggccggg cgccggcctc gcgccgcgtg
      601 cggcgagaag gcttcggccc agcccgggtc ccagccgagg gcgccgagcg cgggatcgtc
      661 aggcatcgcc tccgctgccg gctcggggat caccgccggt cctccggctc gaggtgcttg
      721 cgccacgcgg tcgagcggta cgtgacctcg aaaccgaggc gttcgtagag ctggagcgca
      781 ccggtcgggt tgtcggcatc gacaccgaga ccggcggagg tcaggccgcg ctgccggagg
      841 cgtcgcagcg attcgacgat gagcgctccg gcgagaccgc gccgtcgcca cggccggcgg
      901 gtgaagacgc ttcccaacca gccgcgttcg acgcccatcg cctcgttctc ggcagcgtcg
      961 atcttgttga gcacgccgcc cgccacctcg tcgccgtcga aggccacgat ccagagcgac
     1021 agatccgtcg acggctgggc aagctggcga cggagtcgct cctccgattc gtcgacgccg
     1081 ccccagtggt cctggaatgc ctctgcctgg gcgtgccaga ccgcgggtgc caggtcgttc
     1141 gtgatcggcc ggatctcgag cccgccgggc aacggttggt ccggaatggc ctcgaggctc
     1201 ggcctcgtca tgtcgaagaa gaacctcgcc ggggcgaacc cggcggccgt cagcagggca
     1261 acgtcgcccg gctggctgtc accgctccac gatccgaaca cgcaggcgac gccctcccca
     1321 tcgcggcggg cgagcgcacg actgcggcgc tcgttctccg ccagcagggc agcgccgatg
     1381 ccgcgtcggc gccacgacgg gtcgaccacc ccatcgatgc ggtactcgcg gagaccatcc
     1441 gtcgtctcga cccattctcg cgacgccacg gccaccggcc gcccgtcgat ctcggcgatc
     1501 gtgacgtcgc gaacgggctc gaagtgcggg ctcgggtggg cgtaccgcac cgccagcgtc
     1561 tcgatgtcga cacgttcggg cacgtgatcg gcttcggcct ccgcgttctc gattcgaacg
     1621 atgtccgcca ggtccggctg gcccgcgaag gggcgcagcc ggagcccggc cggcacggtt
     1681 cggggcgtga ctgcaggcga gtcgtgcatg tcagccgacc cgcttgagct tgccggtgcg
     1741 cttggcgtag cgctcggccc ggccgaacgc ccacagcccg aacgggatga acacggcgcc
     1801 catcaccagc agcggccaga cgtcgccgaa caggtccacg accgaggtgc ccttgagcag
     1861 cccggcgcgg acgccgtgga gcacgtaggt cgcgggcgac aggtgcgaca gcacctgcat
     1921 ccagggcggc aggatctcga ccgagtagta cacgccgctg acgagcagca ggcacgactg
     1981 gaggacgaac gtcatctggg cgccacgctc cacgtagagc agcggcagga tcgccgcgat
     2041 catcccgatc ccgacgaagc tgaacgagcc gaggagcatg aacgcgagga ccgtcaccgg
     2101 gttcgcgccg gccaggtcga gctgcgggaa gaacaggatc agcacgatga ggatgaccgt
     2161 ggtgtggacc aggccataca ccatcgcgta gagcaccgac ccgagcagct gcgaccaacg
     2221 ctggatcggc gccatcatgg tgtactcgag ggtgccttcc cagcgttcga ccgagatcgt
     2281 ctcggcgatc caggagaaca cgacggacag gtagttccag aagatcgccc cgaccatcag
     2341 ggtcaggagc agcgtcgggc tgccctggtc ggcaccgatg agcgagatcg acagcgcgcc
     2401 cgcgacggaa tagaccagga aggcgacctc ccagccccag tagcggcgtg tcaggaagaa
     2461 gttgcgctcg atgaaggcgt atgaggcctt cagctcatgg gcgacgatgg tcacgagagg
     2521 a
//
LOCUS       DATDDI010000552         1893 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_594855, whole genome shotgun sequence.
ACCESSION   DATDDI010000552 DATDDI010000000
VERSION     DATDDI010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594855"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VIU37_07940"
     CDS             complement(<1..369)
                     /locus_tag="VIU37_07940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013922.1"
                     /translation="MTAAQHAEAPELMASRRTSAGDQGSAAEVIRLRLADAWGEMGAA
                     WGVAPAIARVQAYLLARQAPLTEREVREALGLSHRAASLALAEAEGWGLIERVSEPRR
                     VGRRGPAGAAYQAVGDHWRWF"
     gene            495..1049
                     /locus_tag="VIU37_07945"
     CDS             495..1049
                     /locus_tag="VIU37_07945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013923.1"
                     /translation="MAVAADLVLAVALTALLLRITSASLDAIPRPLALLALYATPGIV
                     GAVGVRGHRRSLLFAAGIVLVPGSLLSFTGVTLIFALPLALFWAAAVTMGPPDPRPPR
                     AGELAELIVAAGLMLGAGLALFATSWSGCTDTGSICGSGFLSWEGVVLELGLLLAAIA
                     AAARRASQRPAPATNDGSHSGAPA"
     gene            1060..>1893
                     /locus_tag="VIU37_07950"
     CDS             1060..>1893
                     /locus_tag="VIU37_07950"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEY6013924.1"
                     /translation="MPVLRSRLDPASDDARANREAMDRLVGDLRARTALVSDRGAGGD
                     ERSIARHRERGKLPVRERIDRLIDSGSAFLELSPLAATGMYDDEAPSAGIVTGIGRVE
                     GTTCVIVANDATVKGGTYYPLTVKKHLRAQEIALENRLPCVYLVDSGGAFLPLQADVF
                     PDREHFGRIFFNQARMSSLGIPQVALVMGSSTAGGAYVPAMSDETVIVKGTGTIFLGG
                     PPLVKAATGEEVSAEDLGGGDVHTRLSGVADHLAQNDMHALALARQAVATLNRGKRHE
                     QQ"
BASE COUNT          237 a          700 c          694 g          262 t
ORIGIN      
        1 gaaccagcgc cagtggtcgc cgaccgcctg gtaggcggcc ccggccggcc cgcgccggcc
       61 gacgcggcgg ggctcggaca cccgctcgat gaggccccag ccctccgcct cggcgagcgc
      121 caggctcgct gcccggtggg acaggccgag cgcctctcgg acctctcgct ccgtgagggg
      181 tgcctgccgg gcgagcaggt aggcctgcac gcgggcgatc gccggcgcga cgccccaggc
      241 ggcgcccatc tcgccccagg cgtcggcgag gcggaggcgg atgacctcgg ccgccgaccc
      301 ctggtcgccg gcggaggtgc gccgggacgc catgagctcg ggcgcctcgg cgtgttgggc
      361 ggcagtcacg ggcccggctc gctcctccag aacttgccac ttgacactag cagatttccg
      421 ggcgtaagaa catgctaacc atgagtagca cgatagagcc atcgccaatg tcgccgggcg
      481 tccgcctcgg gcgcatggct gtcgccgcgg atctcgtcct cgcggtcgcg ctcacggcgc
      541 tgctgctccg catcacgagc gccagcctgg acgcgatccc ccgcccgctc gcgctgctgg
      601 cgctctacgc cacgccgggc atcgtcggcg ccgtgggcgt gcgcggccac cggcgatcgc
      661 tgctgttcgc ggccgggatc gtcctcgtcc cggggtcgct gctgtccttc accggggtca
      721 ccctgatctt cgcgctgccg ctggcgctct tctgggcggc cgccgtcacg atggggccac
      781 ccgacccgcg gccgcctcgg gccggagagc tcgccgagct catcgtcgcg gcgggcctga
      841 tgctgggggc aggcctggcg ctcttcgcga cctcatggtc cggctgcacg gacacgggct
      901 cgatctgcgg gtcgggcttc ctctcctggg agggcgtcgt cctcgagctg gggctgctgc
      961 tggcggcgat cgccgccgcg gcacgccgtg cgagtcagcg gccggccccg gcgacgaacg
     1021 acggctccca ctcgggagcg cccgcataga cttcggccca tgcccgtcct ccggagccgg
     1081 ctcgacccgg cgagcgacga cgctcgcgcg aaccgcgagg cgatggaccg gctcgtcggc
     1141 gacctccggg cccgcaccgc gctggtgagc gaccgcggcg ccggcgggga cgagcggtcg
     1201 atcgcccgcc accgtgagcg gggcaagctc cccgtccggg agcggatcga ccggctgatc
     1261 gattcgggat ccgccttcct ggagctgagc ccgctcgcgg cgacggggat gtacgacgac
     1321 gaggcgccga gcgccgggat cgtgaccggc atcgggcggg tcgagggcac gacctgcgtc
     1381 atcgtcgcca acgacgcgac ggtgaaaggc gggacctact acccgctgac cgtgaagaag
     1441 cacctgcggg cccaggagat cgcgctcgag aaccgcctgc cgtgcgtcta cctcgtcgac
     1501 tcgggcggtg cgttcctgcc gctccaggcc gacgtctttc ccgatcgcga gcacttcggg
     1561 cggatcttct tcaaccaggc ccggatgtcg tcgctcggga tcccgcaggt ggcgctcgtc
     1621 atggggtcgt cgaccgcggg cggggcctac gtcccggcga tgtccgacga gacggtcatc
     1681 gtcaagggca ccggcacgat cttcctgggc ggcccgccgc tggtgaaggc ggccaccggt
     1741 gaggaggtct cggccgagga cctgggtggc ggcgacgtcc acacccgcct gtccggcgtg
     1801 gccgaccact tggcgcaaaa cgacatgcac gcgctggcgc tggcgcggca ggcggtggcc
     1861 acgctgaacc gcggcaagcg tcacgagcag caa
//
LOCUS       DATDDI010000553         1618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_366049, whole genome shotgun sequence.
ACCESSION   DATDDI010000553 DATDDI010000000
VERSION     DATDDI010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366049"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..1376)
                     /locus_tag="VIU37_07955"
     CDS             complement(297..1376)
                     /locus_tag="VIU37_07955"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6013925.1"
                     /translation="MAVRLEGVVKRFGDAEVGRRVARFVAADERGMVTAVDGIDLEVR
                     DGEFFSMLGPSGSGKTTTLRMIAGFELPTEGRILLQGVDVTTVPPFDRDVNTVFQDYA
                     LFPHMTVGDNVGYGLVVRKVPNAERATRVRDALRMVRLEGYERRRPSQLSGGQRQRVA
                     LARALVNRPRVLLLDEPLGALDLKLREEMQIELKAIQQQVGITFIYVTHDQEEALTMS
                     DRLAVFNNGRIEQVGAPAEVYEHPATQFVAGFVGTSNLLRGDVAERVVGTRGTFTIRP
                     EKIHLAAPDTPVGTDEAAASGVIRGVVYLGPDTRYIVTLDAGAELVVTQQNLATTSTE
                     ALAQQGKAVRLVWKRQHQLPIADAT"
BASE COUNT          233 a          566 c          567 g          252 t
ORIGIN      
        1 gttcatgaaa ctgttcccga aggacaagaa gttctacttc atcacgatgg attacgcctg
       61 gggccatgac atggcaaagg aggcaactgc cgtcatcgag acgacgtagc cggcccaggc
      121 gaccaggttg agcgcgcctt caccgttgcc caccgacgtc ggcaggctcg ggccggtgct
      181 gccggacgag ctcgaacagg ccgccaccgc gatcgacgcc gcggcgacca gggcaacaag
      241 cccgcgtgtg cgagtgactc ccgtgcgcat gactcctctt cctcctcctc gtgcgatcac
      301 gtcgcgtccg cgatgggtag ctggtgctgt cgcttccaga cgaggcggac agccttgccc
      361 tgctgggcga gcgcctcggt cgaggtggtc gccaggttct gctgggtgac gacgagctcg
      421 gccccggcat cgagcgtcac gatgtatcgg gtatccgggc ccaggtagac gacgccccgg
      481 atcaccccgg aggccgcggc ctcgtccgtg ccgaccggcg tgtcgggcgc ggcgagatgg
      541 atcttctccg gccggatcgt gaacgtgccg cgcgtgccca cgacccgctc ggccacgtcg
      601 ccgcgcaaca ggttggaggt gccgacgaac ccggccacga actgcgtcgc cgggtgctcg
      661 tagacctcgg ccggcgcgcc gacctgctcg atccggccgt tgttgaatac cgccaggcgg
      721 tcgctcatcg tcagcgcctc ctcctggtcg tgggtcacgt agatgaaggt gatgccgacc
      781 tgctgctgga tggccttgag ctcgatctgc atctcctcgc ggagcttcag gtccagcgca
      841 ccgagcggct cgtcgaggag cagcacccgc ggccggttca cgagcgcccg agcgagcgcg
      901 acccgctgcc gctggccgcc cgacagctgg ctcgggcggc gtcgctcgta gccctcgagc
      961 cggaccatgc ggagggcgtc cctgacgcgt gtcgcgcgct cggcgttcgg gacctttcgg
     1021 acgaccaggc cgtagccgac gttgtcgccg acggtcatgt gcgggaagag cgcgtagtcc
     1081 tggaagacgg tgttgacgtc ccggtcgaac ggcggcacgg tggtcacgtc gacgccctgc
     1141 agcaggatcc gtccctcggt cggcagctcg aagccggcga tcatccgcag ggtcgtcgtc
     1201 ttgcccgagc cggacggccc gagcatcgag aagaactcgc cgtcgcggac ctcgaggtcg
     1261 atgccgtcga cggccgtcac catgccgcgc tcgtcggccg ccacgaaccg ggccacgcga
     1321 cgaccgacct cggcgtcgcc gaaccgcttg accacgcctt cgaggcggac ggccacgccc
     1381 gtggcttgcg tcccccgttc ggacgagggc gagccaggga gaccggtcgg gatcgccaag
     1441 caggacctct gagctggggt gtcgccgcga gtggggcagt cgcgcgagtg cgccgcactg
     1501 tgcccgcacg tttctggtgt gtcaaggcgg cgccgagacg gcgccgtagg ggttccgcgt
     1561 ggcgcgccgg gaccgccgat cgcctccctt cacgacggcc gttcgcggcg tcggccct
//
LOCUS       DATDDI010000554         2941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_615555, whole genome shotgun sequence.
ACCESSION   DATDDI010000554 DATDDI010000000
VERSION     DATDDI010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_615555"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..1045
                     /locus_tag="VIU37_07960"
     CDS             116..1045
                     /locus_tag="VIU37_07960"
                     /inference="COORDINATES: protein motif:HMM:NF015709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family acid phosphatase"
                     /protein_id="HEY6013926.1"
                     /translation="MLAVLGLTLAVAGVVVAADPLPAIQTITPQKADQVTNIDVLRQQ
                     LKNYYGDPLAASGSAATGGWTHPLVLDSNYAAEAEKVAADAEHWLAARAHSQRPSGEK
                     AIVLDVDDTTLTTWNYELFSNWDYVFATNAQFVGGNGGTFTGNLFPATPGMVDLVKEA
                     VDQGYAVFYITGRGDSQHQQTIANLVNDTAAGYADITTVTLNGATVPEIDAGYPAPTA
                     LAIGHGGFTDGLFTKPPVGSYPAYLNKPEFCAAAITAGTSCPTIRYKSGTRAYIESLG
                     YEIVANFGDQFSDLEGGFADKTFKMPNPNYFLP"
     gene            1238..>2941
                     /locus_tag="VIU37_07965"
     CDS             1238..>2941
                     /locus_tag="VIU37_07965"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEY6013927.1"
                     /translation="MIGARLPVPLKPLAGAVAAIVLAGAASFSGLVGATPVLAQSVPR
                     LASQITDESGVVGGRSAEIGRALDRLLQERGVQLFVAFVPTTSGDVPQSFAQATFEQN
                     GLGGNDMLLLVATDDHRYAWWENGAVPSLPSNEIDQLLSRTLDPRFRAGDYPGGVIDF
                     ADGLAAALGGTVPATAATGPTVAPLTPAPGGEVAEPARDAGPWPGILAGIVLLLAGLT
                     LLWAWWRQRRLRRLTAEERDRRTGELARQANALLIAADDAVRDGQQELGFAEAEFDPA
                     DVDPLRVALTAARAELTAAFTVRQQLDDDVPEDPETRERMLTEIVDRATRLKALLDEQ
                     HQRLAALRDQEAQAPQALAALPDRVAALEARLPAAAATVERLAAYAPAETQSVKGNVE
                     EARKRIAAASGEIERGQASLRATPPDARTAARAVQRVQRVLVEVAGLLDAVDRLAATL
                     DDARNRLGDEIAAAESDLTAALDADQRSPAGPEIAARLAEAKTLLARAKAQAVAPTPA
                     VLAALRDAQQANATADEALASVRQAEERRARERAALDAALRTADASVARAQDFVTTRR
                     QG"
BASE COUNT          430 a         1092 c         1038 g          381 t
ORIGIN      
        1 ccggaacagc gccgccgacc taccatgtcg ccagccagcg ggggagagtc cggtgtagag
       61 gagggccctt gtgatgggtg tacgggcaag gttgcggacg cgacggatgg cctcgatgct
      121 ggccgtgctc gggttgaccc ttgcggtcgc cggcgtcgtc gtggcggcag acccactgcc
      181 ggcgatccag acgatcacgc cgcaaaaggc cgatcaggtc accaacatcg acgtgctgcg
      241 ccagcagctg aagaactact acggcgaccc gttggcggcg agcggctccg cggcgacggg
      301 cgggtggacc caccccctgg tcctcgacag caactacgcc gccgaagccg agaaggtcgc
      361 cgccgatgcc gagcactggc tggcggcccg cgcgcactcg cagcgaccgt cgggcgagaa
      421 ggcgatcgtc ctcgacgtcg atgacaccac gctgacgacg tggaactacg agctgttcag
      481 caactgggac tacgtcttcg cgaccaatgc ccagttcgtc ggcgggaacg gcggcacgtt
      541 caccggcaac ctgttcccgg ccaccccggg catggtcgac ctggtcaagg aggccgtcga
      601 ccagggttac gcggtcttct acatcaccgg gcgcggcgat tcgcagcacc agcagacgat
      661 cgccaacctc gtcaacgaca cggccgccgg ctacgccgac atcacgaccg tcaccctcaa
      721 cggggccacg gtgcccgaga tcgatgccgg ctacccggcc ccgaccgctc tggccatcgg
      781 ccacggcggc ttcacggacg gcctgttcac caagccgccc gtcggttcct atccggcgta
      841 cctgaacaag ccggagttct gcgccgcggc aatcacggcg ggcacgtcct gcccgaccat
      901 ccggtacaag tccggcaccc gtgcgtacat cgagtcgctc ggctacgaga tcgtggccaa
      961 cttcggcgac cagttcagcg atctcgaggg cgggtttgct gacaagacgt tcaagatgcc
     1021 gaaccccaac tacttcctgc cgtagggctt cgcaccggga ctgcgcggcc ccaccgcgca
     1081 gtcccggacg tccgcccggg ccggcgaccc agccgggcgg gtggtgacgt tcggacccgt
     1141 ccgatcggtc ggtccggctc tgagctaccg atcgggcggg tctatccttg tccccgagac
     1201 atcggaggcg tggatgttcg gtgggggatc gttcggcatg atcggcgcgc gcctgcccgt
     1261 gccgctgaag ccactcgccg gcgccgtcgc cgcgatcgtc ctggccggcg cggcctcgtt
     1321 ctcggggctc gtcggcgcca cgcccgtgct cgcccagtcc gttccgcgcc tggccagcca
     1381 gatcaccgat gagtcggggg tcgtcggcgg tcgatcggcc gagatcggca gggcgctgga
     1441 caggctgctc caggagcgtg gcgtccagct gttcgtcgca ttcgtgccga ccacgagcgg
     1501 cgacgtgccg cagtcgttcg cgcaggccac gttcgagcag aacggcctcg gtggcaacga
     1561 catgctgctg ctggtcgcga ccgacgacca tcgctacgcc tggtgggaga acggcgccgt
     1621 gccgtcgctc ccctcgaacg agatcgacca gctgctgagc cgcacgctcg acccgcgctt
     1681 ccgtgccggt gactacccgg gcggcgtgat cgatttcgcg gacggcctgg ctgccgcgct
     1741 gggcggcacc gtcccggcca ccgccgccac cggcccgacc gtggcgccgc tcacccctgc
     1801 gcccggcggc gaggtcgccg aaccggcccg cgacgcgggg ccgtggccgg ggatcctggc
     1861 cgggatcgtc ctactgctcg ccggcctcac cctcctgtgg gcatggtggc ggcagcgccg
     1921 gctgcgacgg ctgaccgccg aggaacgcga ccgccggacc ggcgagctgg cccgccaggc
     1981 aaacgcgctg ctgatcgccg ccgacgacgc cgtccgggac ggccagcagg agctcggatt
     2041 cgccgaggcc gagttcgatc cggccgacgt cgatccactg cgagtcgcgc tgaccgcggc
     2101 acgggccgag ctgaccgccg ccttcaccgt gcgccagcag ctggacgacg acgtccccga
     2161 ggatcccgag acgcgcgagc ggatgctcac cgagatcgtc gaccgggcga cgcgcctcaa
     2221 ggccctgctc gacgagcagc accagcgcct ggctgcgctc cgcgaccagg aggcgcaggc
     2281 gccgcaggcc ctggccgcac ttcccgacag ggtcgcggcg ctcgaggcgc gcctgccggc
     2341 cgccgcggcg acggtcgagc gtctggccgc ctatgccccc gccgagacgc agtcggtgaa
     2401 gggcaacgtg gaggaagcga ggaagcggat cgccgccgcg tccggcgaga tcgagcgcgg
     2461 ccaggcgtcg ctgcgcgcca cgccacccga tgcccggacg gccgcccggg ccgtgcagcg
     2521 ggtgcagcgg gtcctcgtcg aggtggccgg gttgctggac gccgtcgatc gcctggccgc
     2581 gacgctggac gacgcgcgaa accggctcgg cgacgagatc gccgccgccg aatccgacct
     2641 gaccgcggcc ctcgacgcgg accagcgttc gccggctggt cccgagatcg cggcccggct
     2701 ggccgaggcg aagaccctgc tcgcccgggc gaaggcccag gccgtggcgc ccaccccggc
     2761 cgtcctggcg gcgctcaggg acgcacagca ggcgaacgcc accgccgacg aggcactcgc
     2821 ttccgttcgc caggccgagg agcggcgcgc ccgcgagcgc gcggccctcg acgcagcgct
     2881 gcggaccgcg gacgcgagcg tggcccgggc gcaggacttc gtgacgaccc gtcgccaggg
     2941 c
//
LOCUS       DATDDI010000555         1807 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_178787, whole genome shotgun sequence.
ACCESSION   DATDDI010000555 DATDDI010000000
VERSION     DATDDI010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178787"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..782)
                     /locus_tag="VIU37_07970"
     CDS             complement(<1..782)
                     /locus_tag="VIU37_07970"
                     /inference="COORDINATES: protein motif:HMM:NF012447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HEY6013928.1"
                     /translation="MSSHQIPNDEPGRFGGVATEPIVLTGAALTIADVEAVARRGARA
                     VLDPAARDRMQEARDLVEALVASGAVVYGVTTGFGDLANVSIPAADTERLQENVLMSH
                     AAGVGPPFPREIVRAMLLLRANTLSLGHSGCRPLLVDRLLAFLEAGIHPVVPEQGSLG
                     ASGDLAPLAHLALPLIGRGQVEFQGSLVPALIALREVGLEPLVLQAKEGIALLNGTQM
                     MGAIGALLLADADRLARTASVAAAMSVEALLGTDVAFAAAYQL"
     gene            843..1511
                     /locus_tag="VIU37_07975"
     CDS             843..1511
                     /locus_tag="VIU37_07975"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEY6013929.1"
                     /translation="MFAFIDQVVIPFLNSLYGAVGYLGVLVAMTIESAMVPLPSELIL
                     PYAGFLISDPSQLEPLTHGPWGFWIVVVAATVGNTLGSLIAYAIGAYGGRPFLERYGR
                     YLLIRPHEIELADRFFADHGAATVFVGRLLPIVRTFISFPAGVARMPLGRFIVYSTAG
                     ALIWSTLLIYAGTVLGERWTDIRHALQPFDLLIAVGVVVLAVLFVWWRLGMPGRRRGS
                     GATG"
     gene            complement(1508..>1807)
                     /locus_tag="VIU37_07980"
     CDS             complement(1508..>1807)
                     /locus_tag="VIU37_07980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013930.1"
                     /translation="VLLLRFSLSQMDVPTRQSYVMSVVDPDERSAAAGVTGIARTTGA
                     AISPSISSVLVSSAAFASVPFYLAGGLKIAYDLLLYRAFRAEPPRAERPSERPDT"
BASE COUNT          239 a          655 c          649 g          264 t
ORIGIN      
        1 agctggtacg ccgccgcgaa cgcgacgtcc gtcccgagga gggcctccac gctcatcgcg
       61 gcggccacac tggcggtccg ggccagccgg tccgcatcgg ccagcagcag cgccccgatc
      121 gcgcccatca tctgggtgcc gttgagcagc gcgatccctt ccttcgcctg gagaacgagc
      181 ggctccagcc ccacctcgcg gagcgcgatg agggccggca ccagcgagcc ctggaactcg
      241 acctggccac gtccgatcaa cggcagcgcg agatgggcga gcggcgcgag gtcgcccgac
      301 gcgcccaggc tcccctgctc cggcacgacc gggtggatgc cggcctcgag gaacgccagc
      361 agccggtcga ccagcagcgg ccggcacccg ctgtgcccga gcgacagggt gttggcccgg
      421 agcagcagca tcgcccggac gatctcgcgc gggaagggcg gtccgacccc cgcggcatgg
      481 ctcatcagga cgttctcctg gagccgctcg gtgtccgcgg ccgggatgga gacgttggcg
      541 aggtcgccga acccggtcgt cacgccatag acgacggcgc cggaggcgac cagcgcttcg
      601 acgaggtcgc gggcctcctg catccggtcg cgggcggcgg gatcgagcac ggcgcgagca
      661 ccgcggcggg cgaccgcctc cacgtcggcg atggtcagcg ccgcgccggt caggacgatc
      721 ggctcggtcg cgacaccgcc gaatcggccc ggttcgtcgt tcgggatctg gtggctgctc
      781 accgtgccga gcatagtcgg ctatgctgcg cgccgcccac cctgcagcgc cgcgaggttc
      841 gtgtgttcgc gttcatcgac caggtcgtga tcccgttcct caacagcctg tacggcgcgg
      901 tcggctatct cggcgtcctc gtggcgatga cgatcgagtc ggcgatggtg cccctcccgt
      961 cggagctgat cctcccgtac gcgggcttcc tgatctcgga cccgagccag ctcgagccgc
     1021 tgacgcacgg cccgtggggg ttctggatcg tcgtggtcgc ggccaccgtg ggcaacaccc
     1081 tcggctcgct catcgcctat gcgatcgggg cgtacggcgg ccggccgttc ctcgaacgct
     1141 acggccgcta cctgctgatc cggccccacg agatcgagct cgccgaccgc ttcttcgccg
     1201 accacggcgc ggcgaccgtc ttcgtcgggc ggctgctgcc gatcgtgcgc acgttcatca
     1261 gcttcccggc cggggtcgcc cggatgccgc tcgggcggtt catcgtctac tcgaccgcgg
     1321 gcgcgctcat ctggtccacg ctgctcatct acgccggcac ggtgctcggc gaacgttgga
     1381 ccgacatccg gcatgcgctc cagccgttcg acctgctcat cgcggtgggc gtggtcgtgc
     1441 tcgccgtcct gttcgtctgg tggcggctgg ggatgcccgg ccggcggcgc gggagcggcg
     1501 ccacgggcta ggtgtcgggc cgctcgctcg gccgctcggc gcgcggcggc tcggcccgga
     1561 aggcccggta gagcagcagg tcgtaggcga tcttgaggcc gccggccagg tagaacggga
     1621 ccgaggcgaa ggcggcgctg gacacgagga ccgacgagat cgacggcgag atcgcggcgc
     1681 cggtcgtccg cgcgatcccg gtcacgccgg ccgccgccga gcgctcgtcc gggtcgacca
     1741 cggacattac gtacgactga cgcgtgggca cgtccatctg gctcagactg aaccggagca
     1801 gcaggac
//
LOCUS       DATDDI010000556         1920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_511707, whole genome shotgun sequence.
ACCESSION   DATDDI010000556 DATDDI010000000
VERSION     DATDDI010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511707"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..1143)
                     /locus_tag="VIU37_07985"
     CDS             complement(7..1143)
                     /locus_tag="VIU37_07985"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 4"
                     /protein_id="HEY6013931.1"
                     /translation="MLEQLWNGFLDLTTQLVIPDWGKLIALALPVGTTVLVALLMTRT
                     VLQVATAPQARRGKQRITPATPAGIHMPGPSFAPIFAAVGAFLLFIGLVFGGLALVLG
                     AIALVLTLLYWLAEGLRLYDRDVAPTATVLPAVVHDGPPPGVHVPGPSFRPLVGALGT
                     ALLFLGLVFGEWLLAAGVIALIVGLIGWLPDARKEYVKTVEADRTGHLENIPAPRVPT
                     GQLTFLAIIVIGAVVLQSGVFAGKSPTGSAAGGSAAPAASAPAGAGGSAAPGGSAAPG
                     GSAPASSGTGTADVSVEAKGVAFTQTSWAGPANKAFTIAFSNQDPGTPHNIELKDSSG
                     AVVFKGDIFPGVDTRIYQVPALPAGDYTFSCVVHPNMTGTAKLQ"
     gene            complement(1186..1380)
                     /locus_tag="VIU37_07990"
     CDS             complement(1186..1380)
                     /locus_tag="VIU37_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013932.1"
                     /translation="MHPIRHPRNAALVGILFVVIGVIFWAAPAYGGWHVDYAGTTLLI
                     FLGAAMALMAYVLVAGSSKE"
     gene            complement(1393..>1920)
                     /locus_tag="VIU37_07995"
     CDS             complement(1393..>1920)
                     /locus_tag="VIU37_07995"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY6013933.1"
                     /translation="ITSEVMFFGGLFAAYFSVRANAPAWPPQEFHDTLKILPLVGPAT
                     ILLILSSFTCQFAVWGIRRDDRTAFLRSMTVTVVLGVVFLLMQVTDYSTLGGEGLTLS
                     SGTFGTTYYTLTGFHGAHVFGGVIMLSVVLYRGMAGQFSSRHHDAVEAASLYWHFVDV
                     VWILLFSLLYLLPGR"
BASE COUNT          337 a          641 c          699 g          243 t
ORIGIN      
        1 cgcccgctac tggagcttgg cggtccccgt catgttcggg tggacgacgc acgagaacgt
       61 gtagtcgccg gccggcaggg caggaacctg atagatgcgc gtgtcgacgc cagggaagat
      121 gtcgcccttg aagacgacgg cgccgctcga atccttgagc tcgatattgt gcggcgttcc
      181 ggggtcctgg ttcgagaacg cgatcgtgaa ggccttgttg gccggaccgg cccacgacgt
      241 ctgggtgaag gcgacgccct tggcctcgac gctcacgtcc gccgtcccgg tgccggagct
      301 cgccggcgcc gacccaccgg gcgcggccga tccgccgggt gcggccgatc caccggcgcc
      361 ggcaggggcg ctcgccgccg gcgcggcgga cccgcccgcc gccgaacccg tcggcgattt
      421 gcccgcgaac acgcccgact gcaggaccac cgcaccgatc acgatgatcg cgaggaacgt
      481 cagctggccc gtcggcacgc gcggtgcggg gatgttctcg agatggccgg tccggtcggc
      541 ctcgacggtc ttcacgtact ccttgcgggc atcgggcagc cagccgatca gtccgacgat
      601 cagggcgatc acgccggccg ccagcagcca ctcgccgaac accagtccaa ggaagagcag
      661 cgcggtgccg agggcgccga ccagcggacg gaacgagggc ccgggcacgt ggacgcccgg
      721 gggcggtccg tcgtggacga cggctggcag cacggtcgcc gtcggcgcga cgtcgcggtc
      781 gtagagtcgc agcccctcgg ccagccagta cagcagggtg agcaccaggg cgatcgcgcc
      841 gaggaccagc gcgagcccgc cgaagaccag cccgatgaac aggaggaagg cgccgacggc
      901 cgcgaagatg ggggcgaagg aggggccggg catgtggatc ccggccggcg tcgccggcgt
      961 gatccgctgc ttgccgcggc gggcctgcgg ggcggtcgcg acctgcagga cggtccgggt
     1021 catcagcagc gcgaccagga ccgtcgtgcc gaccgggagg gcgagcgcga tcagcttgcc
     1081 ccagtccggg atgacgagct gggtggtcag gtcgaggaag ccgttccaga gctgttcgag
     1141 catcgttccg gccggatcag gtcgcgcgac cgcggtcgat ccgggtcact ccttgctgga
     1201 cccggccacg agcacgtagg ccatcaacgc catcgcggca ccgaggaaga tcaggagcgt
     1261 cgtgcccgcg tagtcgacgt gccagccgcc gtaggccggg gccgcccaga agatcacgcc
     1321 gatgaccacg aacaggatcc cgacgagggc cgcattgcgc ggatggcgga tcggatgcac
     1381 gacggtcgac tcctaccttc cgggcagcag atagaggagc gagaagagca ggatccagac
     1441 gacgtccacg aagtgccagt acaacgacgc ggcctccacc gcatcgtggt gccggctcga
     1501 gaactggccg gccatcccgc ggtagagcac caccgatagc atgatgactc cgccgaacac
     1561 gtgcgcgccg tggaagccgg tcagcgtgta gtacgtcgtg ccgaacgtgc ccgacgagag
     1621 cgtcagcccc tccccgccga gggtcgagta gtccgtgacc tgcatgagca ggaacacgac
     1681 tcccaggacg acggtcaccg tcatgctgcg gaggaacgcc gttcgatcgt cgcggcggat
     1741 cccccagacg gcgaactggc aggtgaacga gctcaggatc agcagaatgg tggccggtcc
     1801 gaccagcggc aggatcttga gcgtgtcgtg gaactcctgg ggcggccacg ccggggcgtt
     1861 cgcccggacg ctgaagtagg cggcaaacag gccgccgaag aacatcacct cggaggtgat
//
LOCUS       DATDDI010000557         1615 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_387000, whole genome shotgun sequence.
ACCESSION   DATDDI010000557 DATDDI010000000
VERSION     DATDDI010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387000"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..878
                     /locus_tag="VIU37_08000"
     CDS             177..878
                     /locus_tag="VIU37_08000"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6013934.1"
                     /translation="MSSAGSVVVVGGTRAIGQEVARHYAQQGEHVVLTGRDPDHVATA
                     VAEVGGDVTGITFDLAEPTAIAAALAGVGPVRRLVLAAIDRDQNSVAEYDIAKAIRLV
                     TLKLVGYTEVVHALRPRLTEDASIVLFGGMAKERPYPGSTTVTTVNGGVVGLTRTLVE
                     ELKPLRVNSIHPGVVGDSPYWAEKPAAVARYTSETPIGRLATMDEIRDATVFLLENAA
                     VNGVDLIVDGGWHCR"
     gene            971..>1615
                     /locus_tag="VIU37_08005"
     CDS             971..>1615
                     /locus_tag="VIU37_08005"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEY6013935.1"
                     /translation="MATPNRNGRLDYPEMGEHLREARRTRRLSLRDLAERLGVSPSLI
                     SQIETGRANPSVSTLYAIAAELDVSLDELLFSDRLSTTAASPVVAPADAAPGSMAHGG
                     GPIQRAADRHVIRLASGVLWERLTTASEPGVEFLLVTYEVGGASSPEDAYQRHSGHEW
                     GYVLSGKLEVRIGFDEYVLSPGDAISINSSMPHRLANIGDVPVQAIWFVLGRAEF"
BASE COUNT          234 a          578 c          583 g          220 t
ORIGIN      
        1 cacgccggcg acatcgtgtt cgcgggcgtg gggtcggtcc acgggttctg gaacgacgga
       61 ccgggacgcg tccgctggat cgagacccag gccccgcaac ccccggcccg gcaggcctac
      121 cgctgggtgc gcagctggga acgctatgag cagggccacg gccaggaggt gagctgatgt
      181 ccagcgccgg ttcagtcgtc gtcgtcggcg gcacccgggc catcggccag gaggtcgccc
      241 gccactatgc gcagcagggc gagcacgtgg ttctcaccgg gcgcgatccc gaccacgtgg
      301 ccacggccgt ggccgaggtc ggcggcgacg tgacggggat cacgttcgac ctggccgaac
      361 cgaccgcgat cgcggcggcg ctggccggcg tcggcccggt ccggcggctc gtcctcgcgg
      421 ccatcgaccg cgaccagaac tcggtcgccg agtacgacat cgccaaggcg atccgcctgg
      481 tcacgctcaa gctcgtcggc tacacggagg tcgtgcacgc gttgcgcccg cgcctcaccg
      541 aggacgcctc gatcgtgctg ttcggcggca tggccaagga gcggccgtat ccgggctcga
      601 ccaccgtcac gaccgtgaac ggcggggtcg tcggcctcac ccggacgctc gtcgaggagc
      661 tcaagcccct ccgcgtcaac tccatccacc ccggcgtcgt cggcgacagc ccgtactggg
      721 cggagaagcc ggccgcggtc gcgaggtaca cgtcggagac gccgatcggc cgcctcgcca
      781 ccatggacga gatccgcgac gccaccgtgt tcctgctcga gaacgcggcg gtcaacggcg
      841 tcgacctcat cgtcgacggc gggtggcact gccgctgagg cgcctgcgag cctctcgggg
      901 atcggattac tctgcagccg acgcagcagc ccacgcttcg acggaagcgc caccagcatc
      961 gagggacagg ttggccaccc cgaaccggaa cggtcgtctc gactaccccg agatggggga
     1021 gcacctgcgc gaggcgaggc gcacgcgacg gctgagcctg cgggacctgg ccgagcggct
     1081 cggcgtgtcg cccagcctga tctcgcagat cgagaccggg cgcgcgaacc cgtcggtgag
     1141 caccctctac gcgatcgccg cggagctcga cgtctcgctc gacgagctgc tgttcagcga
     1201 ccgcctgtcc acgacggcgg cgagccccgt ggtggcgccc gcggacgccg cgccgggctc
     1261 gatggcgcac ggtggcgggc cgatccagcg cgccgccgac cggcacgtga tccggctcgc
     1321 atcgggcgtc ctgtgggagc gcctcaccac ggcctcggag cccggcgtcg agttcctgct
     1381 cgtgacctac gaggtcggcg gggcgtcgag cccggaggac gcctaccagc gccattcggg
     1441 gcatgagtgg gggtacgtcc tgagcggcaa gctcgaggtg cggatcgggt tcgacgagta
     1501 cgtgctgtcg cccggtgacg cgatctcgat caactcgtcc atgccgcacc ggctggccaa
     1561 catcggcgac gtgccggtcc aggcgatctg gttcgtcctc gggcgggcgg agttc
//
LOCUS       DATDDI010000558         3355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_262300, whole genome shotgun sequence.
ACCESSION   DATDDI010000558 DATDDI010000000
VERSION     DATDDI010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262300"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VIU37_08010"
     CDS             <1..556
                     /locus_tag="VIU37_08010"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6013936.1"
                     /translation="GCPPFMERTGEVRRARIATDLPELAADLLEVEIDPPDRVFAETA
                     TIEVAGRRVELRYLGRGHTDHDIVISVPDANVVFAGDLLEGGAVPFFNDGYPLDWPET
                     AYRLAELVRGTVVPGHGDHAGYAFATAQADAFRAIAELGRRIHRGELEIDQALELTPF
                     PDFAREDTRAPLQRALAQLRGELD"
     gene            613..2832
                     /locus_tag="VIU37_08015"
     CDS             613..2832
                     /locus_tag="VIU37_08015"
                     /inference="COORDINATES: protein motif:HMM:NF026092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching N-terminal
                     domain-containing protein"
                     /protein_id="HEY6013937.1"
                     /translation="MARLVEPLPSAPVRSFPARPRPIVKATDLGSAQVLKHLDLYLVS
                     DAFGDIHPDSRGMGLYDGDTRILSCSALRVAGERPVVLHSDPGGSWRGVVQATNPEYR
                     KDPGDKMGGAETILRQTISIGRERTIAEAYRERLDIQNHGPTTFDLDVELELDADYAD
                     IFEVRGYARSSRGELLPIEVTADGGLVFGYLGRDGVTVRTHVAFDPAPELEAATDDQG
                     GSVVARWRAPLRPGERRVFSWTIHPTSEPDQALHRLDPDALDPGNAHATWLEAGARIE
                     TDNELVNQVISRSMSDLRLLESTDPQGEPFIAAGVPWFTTLFGRDSLITSLQTLPFLP
                     RLAIETLEILAGRQATAEDPWRDAELGKILHEFRTGEMSRTGELPFSPYYGSIDATPL
                     WLILLGETHDWTGDDALVERYWPNALAALDWIDKWGDRDGDGFVEYERRAETGLRNQG
                     WKDSTEAIRWLDGSLAETPIALAEVQGYVFDAKRRMARLARHRGDVPLADRLDAEALE
                     LQRRFAEAFRLPDGSIAMALDRSKRPVDTIGSNPGHCLWSGIVPVDQAPAVAAMLGTP
                     AMDSGWGLRTYGADQPGYNPIGYHIGTVWPHDTVIAAAGLRRYGFDAAAGTLSGGLLS
                     AAQHFPAFRLPELFCGFDRAATGAPIAYPVACSPQAWAAGAALMGISTVLGLQADAAA
                     RRLTLNRPNLPSDLTKVVVRGLRVGEASCDLLLHRWRGLTSAEVLRKDGPLEVVVRL"
     gene            complement(2856..>3355)
                     /locus_tag="VIU37_08020"
     CDS             complement(2856..>3355)
                     /locus_tag="VIU37_08020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEY6013938.1"
                     /translation="TAVAILAERGYEVWAATGKDAEAPRLRQLGASGILTRDEVTATG
                     RPLESERWAGAVDAVGGATLPYVLRTLRNGAAVASSGNAGGATLETTVFPFILRGVAL
                     LGMDSVNMPIARRRELWDRLATDLRPRELGLHVTEVSLDELAGALDGIVAGTARGRWL
                     VRIGD"
BASE COUNT          466 a         1255 c         1179 g          455 t
ORIGIN      
        1 gggctgcccg ccgttcatgg aacgcacggg cgaggttcgt cgggcgcgga tcgcgacgga
       61 tctgcccgag ctggccgcgg acctgctcga ggtcgagatc gacccgcccg atcgcgtctt
      121 cgcagagacg gcgacgatcg aggtcgccgg gcgacgcgtc gagctccgct acctcggacg
      181 cgggcacacc gaccacgaca tcgtcatcag cgtcccggac gccaacgtcg tctttgccgg
      241 cgacctgctc gaggggggcg ccgtcccgtt cttcaacgac gggtatccgc tcgactggcc
      301 cgagaccgcc tatcggctgg ccgagctggt ccgtggcacg gtcgtccccg gccacggcga
      361 tcacgcgggc tacgccttcg cgaccgcgca ggcagatgcg tttcgcgcga tcgccgagct
      421 cggccggcgg atccatcgcg gcgagctcga gatcgaccag gcgctcgagc tgaccccgtt
      481 cccggacttc gcgcgcgagg acacccgggc gccgctccag cgagcgctgg cgcagctgcg
      541 gggcgagctc gactgacccg ccggcggccg ggagcggatg acgacttcgg ccgggcgccc
      601 tagactcggg cggtggcacg cctcgtggaa ccgctgccga gcgcaccggt tcgatcgttc
      661 cccgcccggc cgcgcccgat cgtcaaggcg accgacctcg gttcggccca ggtgctcaag
      721 cacctcgacc tgtacctggt gtccgacgcg ttcggggaca tccacccgga cagtcgcggc
      781 atgggcctgt acgacggcga cacccggatc ttgtcgtgca gcgcgttgcg cgtcgccggc
      841 gagcgcccgg tcgtccttca ctccgacccc ggcgggagct ggcgcggcgt ggtccaggcg
      901 accaaccccg agtaccgcaa ggacccgggc gacaagatgg gcggcgccga gacgatcctc
      961 cgccagacga tctcgatcgg ccgcgagcgg acgatcgccg aggcctaccg cgagcgcctc
     1021 gacatccaga accacggccc gacgacgttc gacctcgacg tggagctgga gctcgacgcc
     1081 gactacgccg acatcttcga ggtccgcggg tacgcgcggt cgagccgcgg cgagctgctc
     1141 ccgatcgagg tgaccgcgga cggcggcctg gtcttcgggt acctcgggcg cgacggcgtg
     1201 accgtgcgca cgcacgtcgc cttcgatccc gcgcccgagc tcgaggccgc gaccgacgat
     1261 cagggcggct cggtcgtcgc tcgctggcgg gccccattgc ggcccggcga acgccgggtc
     1321 ttcagctgga cgatccaccc gaccagcgag cccgaccagg cgctccaccg cctcgatccg
     1381 gatgccctcg atcccggcaa cgcccacgcg acctggctcg aggccggcgc ccggatcgag
     1441 accgacaacg agctcgtcaa ccaggtcatc agccgctcga tgagcgacct ccgcctgctc
     1501 gaatcgacgg atccccaggg cgaaccgttc atcgcggccg gcgtcccctg gttcaccacc
     1561 ctgttcggac gggactcgct gatcacctcg ctccagacgc tgccgttcct gccccgcctg
     1621 gcgatcgaga cgctggagat cctggccggg cgccaggcga ccgccgagga cccgtggcgt
     1681 gacgccgagc tcggcaagat cctccacgag ttccggaccg gcgagatgag ccggaccggc
     1741 gagctgccgt tctcgccgta ctacggatcg atcgacgcga cgccgctctg gctgatcctg
     1801 ctcggcgaaa cgcacgactg gaccggcgat gacgccctcg tcgagcgcta ctggccgaac
     1861 gcgttggccg cgctcgactg gatcgacaaa tggggcgatc gcgacggcga cgggttcgtc
     1921 gagtacgagc ggcgcgccga gaccggcctc cgcaaccagg gatggaagga ctccaccgag
     1981 gccatccgct ggctcgacgg cagcctggcc gagacgccga tcgcgctggc cgaggtgcag
     2041 ggctacgtct tcgacgcgaa acggcggatg gcccggctgg cgcggcaccg cggcgacgtc
     2101 ccgctggccg atcgcctgga cgccgaggcg ctcgagctcc agcgtcggtt cgccgaggcg
     2161 ttccgcctcc ccgacgggtc gatcgcgatg gcgctcgatc gatccaagcg gccggtcgac
     2221 acgatcggct ccaatcccgg ccactgcctc tggagcggga tcgtcccggt cgaccaggcg
     2281 cccgccgtgg ccgccatgct cggaacgccg gcgatggact cgggctgggg cctgcggacg
     2341 tacggcgcgg accagcccgg ctacaacccg atcggctacc acatcggcac ggtctggccg
     2401 cacgacacgg tgatcgccgc ggcgggcctc cgccggtacg ggttcgacgc cgctgccggg
     2461 acgctgtcgg gcgggctgct gtcggcggcc cagcatttcc cggccttccg gctgcccgag
     2521 ctgttctgcg gcttcgatcg cgcggcgacc ggcgccccga tcgcctatcc cgtcgcctgc
     2581 tcgccgcagg cgtgggcggc gggcgccgcg ctgatgggga tttcgacggt cctcgggctg
     2641 caggccgacg cggcggccag gcggctgacg ctgaaccgac cgaacctgcc gtccgatctg
     2701 accaaggtcg tcgtccgcgg actgcgcgtc ggcgaagcgt cgtgcgacct gttgctccat
     2761 cgctggcgcg ggctgacgag cgcggaggtc ctgcgcaagg acgggccgct cgaggtggtc
     2821 gtccggctct aggacgccgc ggcggccggg ttcgtctagt cgccgattcg gaccagccag
     2881 cgcccccggg cggtgccggc gacgatgcca tcgagcgccc cagcgagctc gtcgagggag
     2941 acctcggtga cgtgcaggcc gagctcgcgc ggccgcaggt cggtcgccag ccggtcccac
     3001 agctcgcgcc gccgcgcgat cggcatgttc accgaatcca tgcccagcag cgcgacgccg
     3061 cgcaggatga acgggaagac cgtggtctcg agcgtggccc cgccggcgtt cccggacgac
     3121 gcgaccgccg ccccgttccg gagcgtacgc aggacatacg gcagggtcgc gccaccgacg
     3181 gcgtcaacgg caccggccca tcgttccgat tcgagcggcc gtcccgtggc ggtcacctcg
     3241 tcccgggtca ggatccccga cgcaccgagc tggcgcagcc gcggtgcctc cgcgtccttg
     3301 ccggtcgccg cccagacctc gtagcctcgc tcggcgagga tggccacggc cgtgc
//
LOCUS       DATDDI010000559         2915 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_469975, whole genome shotgun sequence.
ACCESSION   DATDDI010000559 DATDDI010000000
VERSION     DATDDI010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469975"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VIU37_08025"
     CDS             complement(<1..539)
                     /locus_tag="VIU37_08025"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013939.1"
                     /translation="MDNLELISQLIRLGLTSYEARAYAALVRRDSFSAAQVARQSGLP
                     RQRIYDVLETLVQKGLASSRPGPHAKYAAVAPELAVERLLTARRAELSSIELDGAAVV
                     EELTPAYLKGQTHTDPLEYIEVLRDRGAINERFAEIQRSVKREILVFTKPPYATPPQE
                     NVEGIEVTQTHVAKSVYESS"
     gene            650..1525
                     /locus_tag="VIU37_08030"
     CDS             650..1525
                     /locus_tag="VIU37_08030"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03619 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY6013940.1"
                     /translation="MDYGLCLPNFQSGASSEGIEAAADVAARVGWSTVWTTDHVLVPA
                     DAAGEYGQVYDAILTLAWVGARQPDLRLGTSVIVVPQRNAVVLAKELASLDALSHGRV
                     IAGVGVGWNEVEFGNLGMGDRFHARGAYLDETIRLWRHLWSGSTEPFHGRFHTIDDFV
                     FGPLPAQGADLPIVIGGRSGPALRRAGTLGDGYHSTSTSPAQYGERVASIREAAAAAG
                     RPEPSFSARVRVDHDGDAGGYAFRGGADDMAAEVRAFAAAGVNHLALTFATTDPQMLV
                     NRVEHFAREVVPLAG"
     gene            complement(1556..1885)
                     /locus_tag="VIU37_08035"
     CDS             complement(1556..1885)
                     /locus_tag="VIU37_08035"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013941.1"
                     /translation="MTPAGDDLRVVDEPGRQRYEARIGDEVAGYLEYRAAGGRTILVH
                     TEVDPAMEGRGVGSKLVAGALDDLRSRGRRITVKCPFVAAFLKRHPDYRDLVAEPPRT
                     AAPGGSS"
     gene            complement(1882..2145)
                     /locus_tag="VIU37_08040"
     CDS             complement(1882..2145)
                     /locus_tag="VIU37_08040"
                     /inference="COORDINATES: protein motif:HMM:NF014229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UBP-type zinc finger domain-containing protein"
                     /protein_id="HEY6013942.1"
                     /translation="MADCPHLAEIREVTPSAEGCEDCLRIGGEWLHLRLCLTCGRVGC
                     CDESPNRHATAHYRASGHPMIRSFEPDETWLWCYVDELGFEPA"
     gene            complement(2178..>2915)
                     /locus_tag="VIU37_08045"
     CDS             complement(2178..>2915)
                     /locus_tag="VIU37_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015212237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6013943.1"
                     /translation="VAFEHVAFRYLPDKPLIDDLSFVAEPGRMVAIVGPTGAGKTTLV
                     NLLMRFYEIDGGRITLDGVDTRELTRDDLRRTFGMVLQDTWLVHGTIRENIAYGRDGA
                     TEEEIVAAAEAAHVDHFVRTLPDGYDTVIDDDATNLSAGEKQLLTIARAFLADPPILI
                     LDEATSSVDTRTEVLIQRAMARLMRGRTTFVIAHRLSTIRDADTILVMNRGSIVEQGT
                     HAELLEAGGFYAELYNSQFVEPLAEAV"
BASE COUNT          382 a         1014 c         1072 g          447 t
ORIGIN      
        1 gacgattcgt agacgctctt ggcgacatgg gtctgggtga cctcgatgcc ctcgacgttc
       61 tcctggggcg gggtggcgta cgggggcttg gtgaagacca ggatctcgcg cttgacgctg
      121 cgctggatct ccgcgaaacg ctcgttgatg gcgccgcggt cgcggaggac ctcgatgtac
      181 tcgagcgggt cggtgtgcgt ctggcccttg aggtaggcgg gcgtcaactc ctcgacgacc
      241 gccgcgccgt ccagctcgat cgacgacagc tccgcgcgcc gggcggtcag cagccgctcg
      301 accgcgagct ccggcgcgac cgcggcgtat ttggcgtgcg ggccgggccg ggacgaggcg
      361 agccctttct ggacgagcgt ctcgaggacg tcgtagatgc gctggcgcgg caggcccgac
      421 tgccgcgcga cctgggcggc gctgaaggaa tcgcgccgga ccagcgcggc gtaggcgcgc
      481 gcctcgtagc tcgtcaagcc gaggcgaatc agctggctga tgagctcgag attgtccacc
      541 cggcgacgat agagaaccac attacgtggt gtcaagcccg gcgggccgtg tggccggccg
      601 cgcgctcgag tgggcccggc cgagccgcga gagccgctac catctcgtca tggactacgg
      661 gctgtgcctt ccgaacttcc agtccggagc ctcgtccgag ggcatcgaag ccgcggccga
      721 cgttgccgcg cgcgtcggct ggtcgaccgt ctggacgacc gaccacgtgc tggtcccggc
      781 cgacgcggcc ggcgaatacg ggcaggtgta cgacgcgatc ctcacgctcg cctgggtcgg
      841 ggcgcggcag ccggacctgc ggttggggac cagcgtcatc gtcgtgccgc agcgaaacgc
      901 ggtcgtcctg gccaaggaac tcgcctcgct cgacgccttg agccacggcc gggtgatcgc
      961 gggcgtcggg gtcggctgga acgaggtcga attcggcaat ctcgggatgg gcgaccggtt
     1021 ccacgccagg ggcgcctatc tcgacgagac catccggctc tggcgccatc tgtggtccgg
     1081 ttcgaccgag ccgttccacg gccggttcca cacgatcgac gacttcgtgt tcggcccgct
     1141 tccggcccag ggcgccgacc tgccgatcgt catcggcggc cggtccgggc ccgccctccg
     1201 gcgagccggc acgctggggg acggctacca ctcgacctcc acgtcgcccg cccagtacgg
     1261 cgagcgggtc gcctcgatcc gggaggccgc cgcggcggcg ggccggccgg agccgagctt
     1321 ctcggctcgc gtccgggtcg accacgacgg cgatgccggc gggtatgcct tccgtggtgg
     1381 cgccgacgac atggcggccg aggtgcgcgc gttcgccgcc gccggcgtga accacctcgc
     1441 cctgaccttc gcgacgacgg atccccagat gctcgtgaac cgcgtcgagc acttcgcccg
     1501 cgaggtcgtc ccgctcgccg gctgaacgcg ccgggcgcgc tgtccgctgg tcgcgctagc
     1561 tggaccctcc cggtgcggcc gtcctcggcg gctccgccac caggtcccgg tagtccgggt
     1621 gccgcttcag gaaggcggcc acgaaggggc acttgaccgt gatccgccgg ccccggctcc
     1681 ggaggtcgtc gagcgcgccc gcgaccagct tgctgccgac gccccggccc tccatcgccg
     1741 gatcgacctc ggtgtggacg aggatcgtcc gcccgcccgc cgcccggtac tccaggtagc
     1801 cggcgacctc atcgccgatg cgcgcctcgt accgctggcg cccgggctcg tcgacgaccc
     1861 ggaggtcgtc cccggccggt gtcacgccgg ctcgaagccg agctcgtcga cgtagcacca
     1921 cagccaggtc tcgtcgggct cgaacgagcg gatcatcggg tggccgctgg cgcggtagtg
     1981 ggccgtggca tggcggttcg gactctcgtc gcagcagccg acgcggccgc acgtgaggca
     2041 cagtcgcagg tgcagccact cgccgccgat gcgcaggcag tcctcgcaac cttcggcgct
     2101 gggcgtgacc tctcggatct cggcgaggtg cgggcagtcg gccatgcccg aagtgtggca
     2161 cgagtcggcg agccggccta gacggcctcg gccagcggtt ccacgaactg gctgttgtag
     2221 agctcggcgt agaagccgcc ggcctcgagc agctcggcgt gggtgccctg ctccacgatg
     2281 ctgccgcggt tcatcacgag gatcgtgtcg gcatcgcgga tggtggacag ccggtgggcg
     2341 atgacgaacg tcgtccggcc gcgcatcagg cgggccatcg cgcgctggat caggacctcg
     2401 gtgcgcgtgt cgaccgagct cgtcgcctcg tcgaggatga ggatcggcgg gtcggccagg
     2461 aacgcccggg cgatcgtcaa cagctgcttc tcgccggccg acaggttcgt ggcgtcgtcg
     2521 tcgatcacgg tgtcgtagcc gtcggggagc gtgcgcacga agtggtcgac gtgggcggcc
     2581 tcggcggcgg ccacgatctc ctcctcggtc gcgccgtcgc ggccgtaggc gatgttctcc
     2641 cggatcgtgc cgtggaccag ccaggtgtcc tggaggacca tcccgaacgt ccgccggagg
     2701 tcgtcgcggg tgagctcgcg cgtgtcgacg ccgtcgagcg tgatcctgcc gccgtcgatc
     2761 tcgtagaacc gcatcagcag gttcacgagg gtcgtcttgc ccgccccggt cgggccgacg
     2821 atggcgacca tccggccggg ctcggcgacg aacgacaggt cgtcgatgag gggcttgtcc
     2881 gggaggtacc ggaaggcgac gtgctcgaag gcgac
//
LOCUS       DATDDI010000560         1817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_95536, whole genome shotgun sequence.
ACCESSION   DATDDI010000560 DATDDI010000000
VERSION     DATDDI010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95536"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            554..1057
                     /locus_tag="VIU37_08050"
     CDS             554..1057
                     /locus_tag="VIU37_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013944.1"
                     /translation="MIDTAVLARFVAVILLVSACGSGNAFATAGPALVKAPAGVDIIA
                     PITPASRTVPGVITFGTRYDSKTLRIARPLTRFKRTFPEIAWSADLNRGVNAASMSWI
                     VVRRSAAGVEKVVFDVDEPIDGPDIRTVANAGDLALCVRNVPGTYVMRYVDAGDVLAE
                     GTFTLVK"
     gene            complement(1089..>1817)
                     /locus_tag="VIU37_08055"
     CDS             complement(1089..>1817)
                     /locus_tag="VIU37_08055"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6013945.1"
                     /translation="LHDRALVVDLIEMTLNHGLFVVRSATSLAEAETILGEWHPHMTI
                     IDMDHQDSTALLGRLGSSDRLARGVTPVLGLTRRGDLKTKLHAFDLGVDDILTVPFSP
                     EELLARSIVITRRAFGSDRPIVPTIRLGEIEIDIVSREVRAGDSVIHLSGIEQSLLYL
                     LASRGGRVVSRDEILDAIWGTDFVAESNIVDRHVRSLRIKLQNDYRHPRFIATVPGHG
                     YRFIPTFSNRGWDGAPMPGDPPDR"
BASE COUNT          276 a          607 c          658 g          276 t
ORIGIN      
        1 ggatcagcgt cgggttcgcc gagctcgagc caggtgatac cgccgatgcg ctcaccgaac
       61 gagcggacgc ggccaggctc accgtcaagg cagcacgtcg atcaaggccg tagcccgggc
      121 tgcgagctca atggcaacgc gcccgctgcc cattcggtcg cggtgggata ggcgtggctg
      181 tcgcggggaa gccagtgcgg ctgggcagcc gagccctggg ggttgggcat cggctgcgca
      241 gcctggaggc gaggcgtcga tccatccctc aggacggctt tcgcctcgcc ggagcgggga
      301 ggaatgcacg gagctgctgc tcacacagtc cacagcgaac tgtgcaccgt cccgggggcg
      361 tgtcatgaca cctcgtcatc catcggcctg gccatcccga cgcatccggg acatgacgca
      421 cggtcatgac gcgcgaccgg ccctcgatag cgtctaggga agctgccgaa cgcacgcgcg
      481 ggagtgccat cggtcgagca tcgctcgcat cccacggtcc cggttgagga gattcaccat
      541 cgcacgacga gacgtgatcg acaccgcagt cctggcgcgc ttcgtcgccg tcatcctgct
      601 ggtgtcggca tgcggcagtg gcaacgcctt cgcgacagcg gggcccgccc tggtcaaggc
      661 tccggcgggg gtcgacatca tcgcgccgat cacgccggcc tcaaggacgg tcccgggggt
      721 gatcaccttc ggcacccgat acgattcgaa gacgctgcgg atcgccaggc cgttgaccag
      781 gttcaagcgg acgttccctg agatcgcctg gagcgcagac ctcaaccgcg gggtcaatgc
      841 cgcgtcgatg tcgtggatcg tcgtgcgccg ttccgcggcg ggcgtcgaga aggtcgtgtt
      901 cgatgtcgac gaacccatcg acggcccgga catccgcacc gtcgcgaacg ccggcgacct
      961 cgccctctgc gtccggaacg tgccgggcac ctacgtgatg cgctacgtcg acgccggcga
     1021 cgtcctggcc gagggcacct tcacgctcgt gaagtaggcg ccgcccccgg cccgccgcgg
     1081 cccgccggtc agcggtcggg cgggtcgccc ggcatcggcg cgccgtccca gccgcggttg
     1141 gagaaggtcg ggatgaaccg gtagccgtgg cccggcacgg tggcgatgaa gcgcgggtgg
     1201 cggtagtcgt tctggagctt gatccgcagg ctccggacgt ggcggtcgac gatgttgctc
     1261 tcggccacga agtcggtccc ccagatcgcg tcgaggatct cgtcgcggct gaccacccgg
     1321 ccgccgcggc tggccagcag gtacagcagg ctctgctcga tgccactcag gtggatgacc
     1381 gaatcgccgg cccgcacctc gcggctgacg atgtcgatct cgatctcgcc gaggcggatg
     1441 gtcggcacga tcgggcggtc gctgccgaac gcgcggcggg tgatcacgat cgagcgggcg
     1501 agcagctcct cgggcgagaa gggcacggtc aggatgtcgt cgacgccgag gtcgaaggcg
     1561 tgcagcttgg tcttgaggtc gccccggcgg gtcagcccga ggaccggcgt gacgccgcgg
     1621 gcgagcctgt ccgaggagcc cagccggccg agcagggcgg tgctgtcctg gtggtccatg
     1681 tcgatgatcg tcatgtgcgg gtgccactcg ccgaggatcg tctcggcctc ggccaggctg
     1741 gtcgccgagc ggaccacgaa caggccgtgg ttgagggtca tctcgatcag gtcgacgacc
     1801 agcgcccggt cgtgcag
//
LOCUS       DATDDI010000561         4987 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_12492, whole genome shotgun sequence.
ACCESSION   DATDDI010000561 DATDDI010000000
VERSION     DATDDI010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4987
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12492"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VIU37_08060"
     CDS             <1..273
                     /locus_tag="VIU37_08060"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEY6013946.1"
                     /translation="ALNNKQIDGLVVDLPTAFYVTAAQMDNGVIVGQFPPTGGEQEHF
                     SLVLAKGNPLTACVNGALAAMKADGSLDAITKEWMSDKANAPVIQP"
     gene            295..1209
                     /locus_tag="VIU37_08065"
     CDS             295..1209
                     /locus_tag="VIU37_08065"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEY6013947.1"
                     /translation="MFGFQGRSDGRPARRPGGGEPSAFRSTLIALASTVVFFGALAWI
                     VVSSPGWPAIQRSFLNGRVFAASLPSIVGSFAVNVQLFLIAEVLILALGLVIAVLRSL
                     PGPVFFPVRLVTTIYVDVFRALPGVLVIYILGFGIPGLGLAGVPIEPFFYAVVALTLI
                     YSAYVSEVYRAGIESIHPSQDAAARSLGLSRFQSLRYVILPQAVRRVVPPLLNDFIGL
                     QKDTVLVSYIGVVEIFRQSYIKQAGSFNFTPYLATALVFLVVTIPLARLTDWLIARES
                     RRRQGGAALALTGTQGRAVAGGPTGGAR"
     gene            1206..1952
                     /locus_tag="VIU37_08070"
     CDS             1206..1952
                     /locus_tag="VIU37_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017405465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEY6013948.1"
                     /translation="MSSVLSIEGLCKAFGRLEVLRGIDLEVAEHEVIALIGASGSGKS
                     TLLRCINLIEPIDAGRIVVNGTDITARGINVDRVRRSIGIVFQSFNLFPQMRVLDNVT
                     LAPRKVLGRRRAEAEADAMALLERFGLEDKAHDYPDRLSGGQQQRVAVVRALAMEPDL
                     LLLDEVTSALDPELVAEVLNVIRELAAGGMTMLIATHEMGFARDMASRVCFLDGGVIL
                     EQGPPDLIFRTPAQPRTRQFLERIIEAGRL"
     gene            complement(1949..2710)
                     /locus_tag="VIU37_08075"
     CDS             complement(1949..2710)
                     /locus_tag="VIU37_08075"
                     /inference="COORDINATES: protein motif:HMM:NF019342.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEY6013949.1"
                     /translation="MHVARSAGPRIVVTVAVAARQGDPEVAERKNRLYADGLARQRAT
                     PILLDATTPAADRAAALAAMDGLLLSGGADLEPARYGRPNQGSTAVEPDRDALEAEAW
                     ATAQARGLPVLGVCRGFQAINVLSGGTLLQHVDGHAGPSWGHGPAATHPLRVAPGTRL
                     ARVLFPANARGGVLQVNSYHHQAIRAADLAPGLVASAWAGSPAGDLVEGLEAADGRFL
                     IGVQCHPERTESTPPAFERLFAVFVDAARGPLSRR"
     gene            complement(2733..3197)
                     /locus_tag="VIU37_08080"
     CDS             complement(2733..3197)
                     /locus_tag="VIU37_08080"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="HEY6013950.1"
                     /translation="MRVRAIPSAVAVLLLVAGVPGVAGCVPRPANLATAAATAIVPSP
                     GSAGEPDTTASAGPLGPTPVPSFARPTPLPAPTLLAYAVKAGDTLTSIAREFHTTPRS
                     IAFWSRAEHPSLDPESAAYQPDRLEVGWVLRLIPDAVFDEDELMDATPSPAG"
     gene            complement(3239..>4987)
                     /locus_tag="VIU37_08085"
     CDS             complement(3239..>4987)
                     /locus_tag="VIU37_08085"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HEY6013951.1"
                     /translation="FDTLCTAPLRDGNTVLGLLNVYHDRPHPWSDAELETISELADQA
                     GVAIRAAQDYDRMATWAAQLQSIQQLGTRLNRLAGVTEIGLAIATELRQLIDYHNVRV
                     YRLRGQELIPVAMQGQVGEYVDETPDQLRVTLGEGITGWVAVHRVAQNLGNAAADPRA
                     NTIPGTEDDLDESMLLAPMLFDDQVLGVLVLSKLGLDQFSDDDLRLLGIYANFAAQAM
                     ANADATERLRDQSQALERQLRGQRELLQITESILTTLDARAVLESITERLGSLIACDN
                     IAIELVDPGTGLLTPLTAHGIHRDFYMLPWEAGETGVATWVVEHNEPVYIRDETTDPR
                     VNQRDDGDPNDGSLIVVPLRNRSGAIGVLTIERLGPGNTFSYDEFELVQLFAAQVSIA
                     LQNAEVFQAVQVRARTDGLTGLLNHSTFEEWLARVVREGNKFSLIMLDLDDFRDVNNS
                     LGHQAGDDLLRRIASGLVRAGRDTDLVFRYGGDEFAFLLPHTDGDGAYQVAERARQAV
                     RTTWRPMSASIGLATFPVDGATPAEVLLAADRACFVAKRSGRDRIATAAEGLALAAEF
                     SLQEPTPVDPVEPGVL"
BASE COUNT          671 a         1752 c         1810 g          754 t
ORIGIN      
        1 gccctgaaca acaagcagat cgacggcctc gtcgtcgacc tgccgacggc gttctacgtg
       61 acggcggcgc agatggacaa cggcgtgatc gtcggccagt tcccgccgac cggcggcgag
      121 caggagcact tcagcctcgt cctggccaag ggcaacccgc tgacggcctg cgtcaacgga
      181 gcgctggccg cgatgaaggc cgacgggtcg ctcgacgcga tcaccaagga atggatgagc
      241 gacaaggcga acgcgccggt catccagccc tgatcctgcg tccggcgcac ctccgtgttc
      301 gggttccagg gccggagcga cgggcgcccg gcccgacgac ccggtggcgg tgagccgtcg
      361 gcgttccgct cgacgctgat cgccctcgcc agcaccgtcg tcttcttcgg cgcgctcgcc
      421 tggatcgtgg tcagctcccc aggctggccg gccatccagc ggtcgttcct caacggcagg
      481 gtgtttgccg cgtcgctgcc gtcgatcgtc gggtcgttcg cggtgaacgt ccagctgttc
      541 ctgatcgccg aggtcctgat cctggcgctc gggctggtca tcgccgtcct gcgcagcctg
      601 cccgggccgg tcttcttccc ggtccggctg gtgaccacga tctacgtcga cgtcttccgc
      661 gccctgccgg gcgtcctggt catctacatc ctgggcttcg ggatcccggg cctcggcctg
      721 gccggcgtcc cgatcgagcc gttcttctac gcggtcgtcg cgctgaccct gatctactcg
      781 gcgtacgtgt cggaggtcta ccgagccggc atcgaatcga tccaccccag ccaggatgcc
      841 gccgcgcgct cgctcggcct cagccgcttc cagtcgctcc ggtacgtgat cctgccgcag
      901 gccgtccgcc gggtggtgcc cccgctcctc aacgacttca tcggcctcca gaaggacacc
      961 gtgctggtgt cgtacatcgg ggtcgtggag atcttccggc agtcgtacat caagcaggcc
     1021 ggcagcttca acttcacgcc ctacctcgcg accgccctgg tcttcctcgt cgtgaccatc
     1081 ccgctggcca ggctcacgga ctggctgatc gcccgcgagt cgcgacgccg ccagggcggg
     1141 gccgccctcg cgctcaccgg gacgcagggg cgcgccgtgg ccggcgggcc gacgggcggc
     1201 gccaggtgag ctcggtcctg tcgatcgagg gcctgtgcaa ggcgttcggt cggctcgagg
     1261 tcctgcgcgg catcgacctc gaggtcgccg agcacgaggt gatcgcgctg atcggcgcgt
     1321 cggggagcgg caagtcgacg ctgctccggt gcatcaacct catcgagccg atcgatgccg
     1381 gccggatcgt cgtcaatggg acggacatca ccgcccgggg catcaacgtc gaccgcgtcc
     1441 ggcgctcgat cgggatcgtc ttccagtcgt tcaacctgtt cccgcagatg cgcgtgctcg
     1501 acaacgtcac gctggccccg cgcaaggtgc tcggccgccg tcgggccgag gcggaggcgg
     1561 acgcgatggc gctgctcgag cggttcgggc tcgaggacaa ggcgcacgac tacccggacc
     1621 ggctgtcggg cgggcagcag cagcgcgtgg cggtcgtccg agccctcgcc atggagcccg
     1681 acctcctgct gctcgacgag gtcacctcgg cgctcgatcc ggaactggtg gccgaggtcc
     1741 tcaacgtgat ccgtgagctg gcggcgggcg gcatgacgat gctgatcgcg acccacgaga
     1801 tggggttcgc ccgggatatg gccagccggg tctgcttcct cgacggaggc gtgatcctcg
     1861 agcaggggcc acccgacctg atcttccgca ccccggccca gccgcggacc cgtcagttcc
     1921 tcgagcggat catcgaggcc ggccgcctct agcgccggct cagcggtccc cgcgccgcat
     1981 cgacgaacac ggcgaacagt cgctcgaacg cgggcggcgt cgactcggtc cgctcgggat
     2041 ggcattgcac gccgatgagg aaccggccgt ccgccgcctc gagaccttcg acgaggtcgc
     2101 ccgccgggct gccggcccat gcgctcgcga ccagcccggg ggcgaggtcc gcggcccgga
     2161 tcgcctggtg gtggtacgag ttgacctgga ggacgccgcc ccgggcgttg gccgggaaca
     2221 ggacccgcgc gagccgggtc ccgggcgcga cccgaagcgg atgggtggcc gccggcccgt
     2281 ggccccagct cggtccggca tggccatcga catgctggag gagcgtgccg ccggacagga
     2341 cattgatcgc ctggaaccca cggcacacgc cgagcaccgg caggccgcgc gcctgcgccg
     2401 tggcccaggc ctcggcctcg agggcgtcgc ggtcgggctc gacggcggtg gagccctggt
     2461 tcgggcggcc gtagcgggcg ggctcgagat cggcgccgcc gctcagcagg agcccgtcca
     2521 tcgcggcgag cgccgccgct cgatcggcgg ccggcgtcgt cgcgtcgagc aggatcggcg
     2581 tcgcgcgctg gcgagcgagg ccgtcggcgt acagccggtt cttccgttcc gcgacctcgg
     2641 ggtcgccctg ccgggcggca accgcgaccg tcacgacgat cctgggcccg gccgaccgcg
     2701 cgacgtgcat cgggccacga tagcgtcccg gctcacccgg cagggctcgg cgtggcgtcc
     2761 atcaactcgt cctcgtcgaa gaccgcgtcc gggatcagcc gaaggaccca gccgacctcg
     2821 aggcggtcgg gctggtacgc cgccgactcg ggatcgagcg aggggtgctc ggcccggctc
     2881 cagaacgcga tgctgcgcgg cgtggtgtgg aactcgcgcg cgatcgaggt cagggtgtcg
     2941 ccggccttga ccgcgtaggc caggagggtc ggcgccggca gcggcgtcgg gcgcgcgaag
     3001 gacgggaccg gcgtgggccc cagcggtcct gcggaggccg tggtgtccgg ctcgccggcc
     3061 gaacccgggc tcggcacgat ggccgtcgcc gccgcggttg cgaggttcgc cggcctcggg
     3121 acacatcccg cgacacccgg caccccggcg accaggagca ggaccgcgac cgcggacggg
     3181 atcgcccgga cacgcatctc gggcatcgtg acggataccc gcgggtgcgg gtgacggctc
     3241 agaggactcc cggttccacc ggatcgaccg gcgtcggctc ctggagcgag aactcggcgg
     3301 ccagggccag gccctcggcg gccgtcgcga tgcggtcgcg cccgctgcgc ttggccacga
     3361 agcacgctcg atcggccgcc agcagcacct cggccggcgt ggcgccgtcg accgggaagg
     3421 tggccaggcc gatggacgcg ctcatcgggc gccatgtcgt ccggaccgcc tgccgcgctc
     3481 gctcggccac ctgataggcc ccgtcgccgt cggtgtgcgg caggaggaag gcgaactcgt
     3541 cgccgccata tcggaagacc aggtcggtgt cgcgcccggc gcggacgaga cccgacgcga
     3601 tccgccggag gaggtcgtcg ccggcctggt gcccgaggct gttgttgacg tcccggaagt
     3661 cgtcgaggtc gagcatgatc aggctgaact tgttgccctc gcggacgacg cgcgccagcc
     3721 actcctcgaa cgtgctgtgg ttgaggaggc cggtcagccc atcggttcgg gcgcgaacct
     3781 ggacggcctg gaagacctcg gcgttctgga gggcgatcga gacctgcgcg gcgaacagct
     3841 ggacgagctc gaactcgtcg tacgagaacg tgttccccgg accgagccgc tcgatcgtga
     3901 gcacgccgat cgcgcccgag cggttgcgca gcgggaccac gatcaggctg ccgtcgttgg
     3961 gatccccgtc gtcccgctgg ttgacccgcg ggtcggtggt ctcgtcgcgg atgtagaccg
     4021 gctcgttgtg ctccaccacc caggtcgcca cgccggtctc gcccgcctcc cagggcagca
     4081 tgtagaagtc ccgatggatg ccgtgggccg tcagcggcgt cagcaggccg gtgcccgggt
     4141 cgacgagctc gatggcgatg ttgtcgcagg cgatcaggct gccgagccgt tcggtgatgc
     4201 tctcgaggac ggcgcgtgcg tcgagcgtgg tcaggatcga ttcggtgatc tgcaggagct
     4261 cgcgctggcc ccggagctgg cgctcgagcg cctggctctg atcgcggaga cgctccgttg
     4321 cgtcggcgtt ggccatcgcc tgggccgcga agttggcata gatcccaagg aggcggaggt
     4381 cgtcgtcgct gaactggtcg aggccgagct tggacaggac cagcaccccg aggacctggt
     4441 cgtcgaacag catcggcgcc agcagcatcg attcgtccag gtcgtcctcg gtgcccggga
     4501 tcgtgttcgc ccgaggatcg gccgcggcgt tgcccaggtt ctgggccacc cggtggacgg
     4561 cgacccagcc ggtgatcccc tcgccgaggg tgacccggag ctggtcgggc gtctcgtcaa
     4621 cgtactcgcc gacctggccc tgcatggcca ccgggatgag ctcctggccc cgcaatcgat
     4681 acacgcggac gttgtggtag tcgatgagct ggcgcagctc ggtggcgatc gccaggccga
     4741 tctcggtcac gcccgccaac cggttgagcc gcgtgccgag ctgctggatc gactgcagct
     4801 gggcggccca ggtcgccatc cggtcgtaat cctgggcggc ccggatcgcg acgcccgcct
     4861 ggtctgccag ctcggagatc gtctcgagct ccgcgtccga ccaggggtgg gggcgatcgt
     4921 ggtagacgtt gagcaggccg aggacggtgt tgccatcgcg gagcggcgcg gtgcacaagg
     4981 tgtcgaa
//
LOCUS       DATDDI010000562         1710 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_53950, whole genome shotgun sequence.
ACCESSION   DATDDI010000562 DATDDI010000000
VERSION     DATDDI010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53950"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /locus_tag="VIU37_08090"
     CDS             complement(<1..822)
                     /locus_tag="VIU37_08090"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6013952.1"
                     /translation="MDLELRRFADVDGFLAVAGEFLEAREAEHNLILGISSYVRDQPN
                     VFGEGTPYFAAVLAGDRVVAVALRTPPHNLVLSEIDDPGAIDRLVADRLGEDLPGVLG
                     PVEHARAFAERWAAATGQSWRHHLAERIFQLRAVIPPAPVPGSLRTATPGDRALVAAW
                     MRAFMDEALGEDDPDSAESLTDRWLEGRQRTLYLWQDGETVSLCGVGGATPHGIRIGP
                     VYTPPAARRRGYASALVAEASKLQLDAGRRFCFLFTDLANPTANHIYQSIGYEPVR"
     gene            949..1149
                     /locus_tag="VIU37_08095"
     CDS             949..1149
                     /locus_tag="VIU37_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013953.1"
                     /translation="MNVPTELIQVLVLVATAIPVIATIRLIAGGADAGLDGILTFDAS
                     LPWPKGVQEEEPQPWRFDSAPA"
     gene            1501..>1710
                     /locus_tag="VIU37_08100"
     CDS             1501..>1710
                     /locus_tag="VIU37_08100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013954.1"
                     /translation="MPGEPDADSNADADANADTNTNSNTDTDANPNADAYADANPNAD
                     ADADADSHANPDANADAHSDADAHPG"
BASE COUNT          264 a          656 c          565 g          225 t
ORIGIN      
        1 gcgcaccggc tcgtagccga tcgactggta gatgtggttc gccgtgggat tcgccaggtc
       61 ggtgaacagg aagcagaacc gccggccggc atcgagctgg agcttgctcg cctcggccac
      121 gagcgcgctg gcgtagcccc ggcgtcgggc ggccggcggc gtgtacacgg gcccgatccg
      181 gatgccgtgc ggcgtcgccc cgcccacgcc gcacagtgac acggtctcgc cgtcctgcca
      241 caggtagagg gtccgctggc ggccctcgag ccatcggtcg gtcagcgact ccgccgaatc
      301 gggatcgtcc tcgccgagtg cctcgtccat gaacgcccgc atccatgccg cgaccagggc
      361 acgatcgccc ggcgttgcgg tccggaggct gcccgggacg ggcgccggcg ggatcactgc
      421 gcgcaactgg aagatccgct ccgcgaggtg atgccgccac gactgcccgg tcgccgcagc
      481 ccaccgctcc gcgaacgccc gcgcatgctc gacgggtccg aggactccgg gcaggtcttc
      541 cccgagacga tcggcgacga gccggtcgat ggcacccggg tcgtcgatct cgctcaggac
      601 gaggttgtgg ggcggggtcc gcagcgcgac cgcgacgacg cggtcgccgg cgagcaccgc
      661 cgcgaagtac ggcgtcccct cgccgaagac gttcggctgg tcgcggacgt acgagctgat
      721 cccgaggatc aggttgtgct ccgcttcgcg cgcctcgagg aactcgcccg cgacggccag
      781 gaacccgtcg acgtcggcga accggcgcaa ctccagatcc atccgccaat tgtgacgtcg
      841 ccgggtgtcg ccatttgtcc atggccacgt gcgaccttcg ccggtagggc ggccaggtcg
      901 cggcctgcag catcgcgggc accgtactca caccaatgga gcccagccgt gaacgtcccc
      961 accgagctca tccaggtcct cgtcctggtc gcgaccgcca tcccggtcat cgccacgatc
     1021 cggctcatcg cgggtggcgc cgacgccgga ctcgacggca tcctcacctt cgatgccagc
     1081 ctcccgtggc ccaagggcgt ccaggaagag gagccccagc cctggaggtt cgactccgcg
     1141 cccgcctgac gcgggtcctg gccctgccct ggcccgatcg tgccgtggca gttcgggact
     1201 tccgagtctt gtgggtgcac gtcggtcccg cctacgctgc cggtccgccg gggagcagga
     1261 ggagccgatg cacaacccag gattccgtcg aggcgcgatc cgtctggggt ccaccctcgc
     1321 ggtagccgcg ttgctcggcg cttcggcgct gccggcgttg gcgaagcacg aggacaaggt
     1381 cggcgtctgc catcacacgg gcagcgcgac gaatcccgtc gtcttcatca tggtcgcccc
     1441 ggcagcggtc ccggcgcacg aggcccacgg ggatacggtc ggcgtgaagg atgccagcga
     1501 gtgcctggcg agcccgacgc cgactccaac gccgacgccg acgccaacgc cgacaccaac
     1561 accaactcca acaccgacac cgacgccaac cccaacgccg acgcctacgc cgacgccaac
     1621 cccaacgccg acgccgacgc cgacgccgac tcccacgcca accccgacgc caacgccgac
     1681 gcccactccg acgccgacgc ccaccccgga
//
LOCUS       DATDDI010000563         2463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_428634, whole genome shotgun sequence.
ACCESSION   DATDDI010000563 DATDDI010000000
VERSION     DATDDI010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428634"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..605)
                     /locus_tag="VIU37_08105"
     CDS             complement(63..605)
                     /locus_tag="VIU37_08105"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEY6013955.1"
                     /translation="MKIVIVGCGRVGASAADLYDRSGHDVIILDSVTAAFDRLPSTFG
                     GQAIRGDGTDEDVLLKAGAAGADVFLAVTEGDNRNVMAAQLANEALGIPRSIAKINDP
                     LRAAAYAELGIATLCRTGLMLDAVNEYLGLPSSDLPGMLAPTGHHHGVQHDGAAPLAG
                     ATPVGAPSASATAPATSQEV"
     gene            complement(602..1060)
                     /locus_tag="VIU37_08110"
     CDS             complement(602..1060)
                     /locus_tag="VIU37_08110"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY6013956.1"
                     /translation="MSEAHRPVFRRAVIALNGGPSDARIVRLVAEQARLTKAELIAVH
                     ILEIDWTLPLDADIAGDSDEVQRVLDSAEAIAEESKIRLEPVLLQARDVGAAIVDETV
                     ERGADLLVVGLPYRKRFGGEFAIGRTIPYILQNAPCAVWVVRDPISEETK"
     gene            complement(1102..>2463)
                     /locus_tag="VIU37_08115"
     CDS             complement(1102..>2463)
                     /locus_tag="VIU37_08115"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6013957.1"
                     /translation="GLALAIVAVGAVRILGGTAAAIAPEPDAVPLGTNAIGVLLLLKA
                     FAGGSVALTGVEAIANGVPAFKPPEARNAANTMTAMAVLLGILFIGLTIVAVQFGLRP
                     TLPGGPSIVALAARTAFGDGSVLFVTFAASTALILFLAANTSFNAFPRLAAILAEDGY
                     MPRQFSFRGDRLAYSWGIVLLAGVAFLLLAAFGGDTHSLIPLYSVGVFVCFTLSQVGM
                     VRHWWDERSAGWRWRMAVNAGGAVLTAVVLVVVVSEKFVDGAYLVVILVPTLVAMMLF
                     IKQQYTRSGRELAVAPDLVVRAPHREQRVVVPIPGLTRAVVQAINVGRTISEDIRAVY
                     ISDDPASAAELRTNFERQVPGVPLVVVESPYRALSGPLLAYLELLDAAWPPDKREPIT
                     FVVIPEYVARSWWERILYNQASKRLRRVLLGRPHTVLVNVPYRREDPALFESALGAEH
                     ADE"
BASE COUNT          394 a          845 c          888 g          336 t
ORIGIN      
        1 atgagttcct tggccaggta gtagccgact tttcccccgc cgacgacgag gacgaacacg
       61 tctcagacct cctggctggt ggcgggagcg gtggctgacg cggacggcgc tccgaccggg
      121 gtggccccgg cgagcggagc cgctccgtcg tgctggacac cgtggtgatg accggtcggc
      181 gcgagcatgc cgggcaggtc cgagctcggc agcccgaggt actcgttgac ggcgtcgagc
      241 atgagcccgg tccggcagag ggtcgcgatg ccgagctcgg cataggctgc cgctcgaagg
      301 gggtcgttga tcttggcgat cgatcgcggg atgccgaggg cctcgttggc cagctgcgcg
      361 gccatgacgt tccggttgtc gccctcggtg acggccagga agacgtcggc acccgccgca
      421 cccgccttca ggagcacgtc ctcgtcggtc ccgtcccccc ggatcgcctg cccgccgaag
      481 gtcgacggca gccggtcgaa ggcggcggtg acgctgtcga ggatgatgac gtcgtggccc
      541 gagcggtcat acagatccgc cgcggatgcg cccacgcggc cacatccgac gatgacgatc
      601 ttcacttcgt ttcctcgctg atcgggtccc gcacgaccca gaccgcgcag ggcgcgttct
      661 ggaggatgta cgggatggtg cggccgatgg cgaactcgcc accgaaccgc ttgcggtagg
      721 gcaggccgac cacgagcagg tcggccccgc gctcgacggt ctcgtcgacg atcgcggcgc
      781 ccacgtctcg agcctggagg agcacgggtt ccagcctgat cttcgattcc tcggcgatcg
      841 cctcggcact gtcgaggacg cgctggacct catccgaatc gccggcgatg tccgcgtcga
      901 gcggcaacgt ccagtcgatc tcgaggatgt ggaccgcgat cagctcggcc ttggtgaggc
      961 gggcctgctc ggcgacgagg cggacgatcc gcgcatcgct cggaccgccg ttgagggcga
     1021 tgacggcacg gcggaacacc ggcctgtggg cttctgacat ggcggatcac gataccaccg
     1081 gcagggccgc cggtcgcccg tctactcgtc ggcatgctcc gcgccgaggg ccgattcgaa
     1141 cagggccggg tcttcgcgcc ggtacgggac gttgacgagg accgtgtggg ggcgcccgag
     1201 caacacccgg cgcagccgtt tcgacgcctg gttgtagagg atccgctccc accagctgcg
     1261 agccacgtac tcggggatga cgacgaacgt gatcggttcg cgcttgtccg gtggccaggc
     1321 ggcatcgagc agttccagat aggcgagcag cggcccgctc aacgcgcggt atggcgattc
     1381 gaccacgacg agcggcacgc cggggacctg gcgttcgaag ttggtgcgca gctcggcggc
     1441 cgacgccggg tcgtcggaga tgtacaccgc ccggatgtcc tcgctgatcg tccggccgac
     1501 gttgatcgcc tggaccacgg cccgggtgag accggggatc ggcacgacca cgcgttgctc
     1561 ccgatgcggc gcgcgcacga ccaggtccgg ggcgacggcg agctcgcggc ccgagcgcgt
     1621 gtactgctgc ttgatgaaca gcatcatcgc caccagggtc gggaccagga tcacgaccag
     1681 gtaggccccg tcgacgaact tctccgagac gaccacgacc aggacgacgg ccgtgagcac
     1741 ggcgccgccc gcgttgaccg ccatccgcca gcgccagccg gcgctccgct cgtcccacca
     1801 gtgacggacc atgccgacct ggctgagcgt gaagcacacg aacacgccga ccgagtagag
     1861 cgggatcagc gagtgcgtat cgccgccgaa cgcggccagc agcaggaacg ccacgccggc
     1921 cagcaggacg atcccccacg agtaggcgag gcggtcgccg cggaacgaga actggcgcgg
     1981 catgtagccg tcctcggcca ggatcgcggc cagccgcggg aacgcgttga agctcgtgtt
     2041 ggcggccagg aacaggatca gcgcggtgct cgcggcgaac gtcacgaaca gcacggagcc
     2101 gtcgccgaac gccgtccgcg ccgcgagggc cacgatcgac ggcccgcccg gcagcgtcgg
     2161 ccgcagcccg aactggacgg cgacgatcgt caggccgatg aacaggatcc cgagcaggac
     2221 ggccatcgcg gtcatcgtgt tggcggcgtt gcgggcctcg ggcggcttga acgccgggac
     2281 gccgttggcg atcgcctcga caccggtcag cgcgaccgac ccgccagcga acgccttgag
     2341 cagcaacagc acgccgatcg cgttggtgcc gagcggaacg gcgtcgggct cgggcgcgat
     2401 ggcggccgcg gtgccgccca ggatccggac cgcgccgacc gccacgatcg ccagcgcgag
     2461 gcc
//
LOCUS       DATDDI010000564         1930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_262366, whole genome shotgun sequence.
ACCESSION   DATDDI010000564 DATDDI010000000
VERSION     DATDDI010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262366"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VIU37_08120"
     CDS             <1..581
                     /locus_tag="VIU37_08120"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY6013958.1"
                     /translation="RLIVDWGVVPGRLTAAWARGDFLSADTATLITSQFLHGGWLHLL
                     GNMLYLWIFGNNVEDRFGRVGFLAFYLGGGVVAGLAQVAVDPTSGAPTIGASGAIAAT
                     LGAYIVLFPRARVTSLIFLGFFYQLLNIPAVVVLGFWFVLQLIDGFASLGVTQTGGVA
                     FFAHIGGFILGAMVGFAAKHSPAGPAGRRGVG"
     gene            589..1140
                     /locus_tag="VIU37_08125"
     CDS             589..1140
                     /locus_tag="VIU37_08125"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEY6013959.1"
                     /translation="MDDELVEMQVESVRVHMLSNRHVVILKQADRDRYLPIWIGPWEA
                     SSIAMKLQGLTPERPLTHDLFASTLEALGVEIDRVIISELAEETFHARILFERDGRSV
                     EVDARPSDALALAVRTGVRIFASIAVLEQAALGADGGLGDEGEEGSTLESIGEGIVDP
                     RLDVFRDFVNSLDAGPENEGRGS"
     gene            complement(1137..>1930)
                     /locus_tag="VIU37_08130"
     CDS             complement(1137..>1930)
                     /locus_tag="VIU37_08130"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6013960.1"
                     /translation="FVTAASPAPDAAVPARVARLSYFFPAHNEEANLEGLVDEALTAL
                     PAIADTFEIIAVDDGSRDATASIAERLAERHPDVVRLVRHPVNLGYGAALRSGFAASR
                     YELVAFTDGDRQFKVADLGRLTTRLAAPDSPDVVVGYRIKRADPLVRTLYARAYRLAN
                     RIFFGLRVTDVDCACKLFRRPALERLRVESGGAFFSAELLIKLQAEGASVAEVGIPHY
                     PRTAGSATGAKPSVVFRAVRDFWLLRLRMWANRRAALRRGSPILG"
BASE COUNT          280 a          674 c          690 g          286 t
ORIGIN      
        1 accggctgat cgtggactgg ggtgtcgtgc cggggaggct cacggcagcc tgggcacgcg
       61 gcgacttcct gtccgccgac acggccacgc tgatcaccag ccagttcctg catggtggct
      121 ggctgcacct gctcggcaac atgctctacc tgtggatctt cgggaacaac gtcgaggacc
      181 ggttcgggcg cgtcgggttc cttgccttct acctgggcgg cggcgtcgtg gccgggctcg
      241 cccaggtcgc cgtcgatccg acgtcgggcg ccccgacgat tggcgcctcc ggcgcgatcg
      301 ccgccaccct tggcgcctac atcgtgctgt tcccgcgagc ccgggtgacc tcgctgatct
      361 tcctcgggtt cttctaccag ctgttgaaca tcccggccgt ggtcgtgctc ggcttctggt
      421 tcgtcctgca gctcatcgac gggttcgcgt cgctcggcgt cacgcagacc ggcggggtcg
      481 ccttcttcgc gcacatcggc ggcttcatcc tcggggccat ggtcgggttc gccgcgaagc
      541 acagccctgc cggaccggcc ggccggcgag gcgtgggata atccgcccat ggacgacgag
      601 ctcgtcgaga tgcaggtcga gagcgtccgc gtgcacatgc tctcgaaccg ccacgtcgtg
      661 atcctcaagc aggccgaccg cgatcgctac ctcccgatct ggatcggacc gtgggaggcg
      721 agctcgatcg cgatgaagct ccagggcctc actcccgagc gccccctgac ccacgacctc
      781 ttcgccagca cgctcgaggc gcttggggtc gagatcgacc gcgtgatcat ctccgagctg
      841 gccgaggaga ccttccacgc ccggatcctg ttcgagcgcg acgggcgcag cgtggaggtg
      901 gatgcccgcc cgtccgacgc gctcgccctc gcggtacgga ccggcgtccg gatcttcgcg
      961 tcgatcgcgg tgctcgagca ggccgccctg ggcgccgacg gcgggctcgg cgacgagggc
     1021 gaggagggct cgacgctcga atcgatcggc gaggggatcg tcgacccgcg gctcgacgtc
     1081 ttccgcgatt tcgtcaactc gctcgacgcc gggcccgaga acgagggccg gggcagctag
     1141 ccgagaatcg gcgagccgcg acgcagcgcg gcccggcggt tggcccacat ccgcaatcgg
     1201 agcaaccaga aatcgcggac cgcccggaac acgaccgacg gcttggcgcc cgtcgccgag
     1261 cccgccgtac gggggtagtg cgggatgccg acctcggcga ccgatgcgcc ctccgcctgc
     1321 agcttgatca ggagctcggc cgagaagaac gccccgcccg attcgacacg caggcgctcg
     1381 agggcgggtc ggcggaagag cttgcaggca cagtcgacgt cggtcacccg cagcccgaag
     1441 aagatccggt tcgcgaggcg ataggcccgg gcatagagcg tccggacgag cgggtccgcg
     1501 cgcttgatcc ggtagccgac cacgacatcc ggcgagtccg gcgcggccag gcgggtcgtg
     1561 agccggccga gatcggccac cttgaactgg cggtcgccgt cggtgaacgc gaccagctcg
     1621 tagcgcgaag cggcgaaccc ggaccggagg gccgctccgt agccgaggtt caccgggtgc
     1681 cggacgaggc gaacgacgtc ggggtggcgc tcggcgaggc gctccgcgat gctcgccgtg
     1741 gcgtcacgcg agccgtcgtc cacggcgatg atctcgaacg tgtcggcgat cgcgggcagg
     1801 gcggtcagcg cctcgtcgac aaggccctcg agattcgcct cctcgttgtg ggccgggaag
     1861 aagtacgaca gtcgcgccac ccgggccggc acggccgcat ccggcgcggg ggaggcggcg
     1921 gtcacgaacc
//
LOCUS       DATDDI010000565         2753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_75105, whole genome shotgun sequence.
ACCESSION   DATDDI010000565 DATDDI010000000
VERSION     DATDDI010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75105"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VIU37_08135"
     CDS             <1..477
                     /locus_tag="VIU37_08135"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY6013961.1"
                     /translation="LKRLSLSRVSELDLRPAVVARVGDASAEARRRSATEPFPYLLLV
                     DERRRPIGWIADDEIPTEGRLTERMAESMSPLINRRTTLKDALSMLLDADVQAGIVVD
                     RTGAVLGLVTADMIAERMRETAGDARFAQVDLETIEQADVTAIPATRGEPAEPAPS"
     gene            474..1136
                     /locus_tag="VIU37_08140"
     CDS             474..1136
                     /locus_tag="VIU37_08140"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013962.1"
                     /translation="MIDWGWVSDHLDKVAFRTLQHLYLTIIALAVGFAISFALGVIAA
                     RWRPVNAVATAIAGLVFTIPSLALFAALVPATGLTVVTAEIPLVLYTLVILLRNVVAG
                     LQAASPEVREAADGMGFTALGRLRSVELPLAVPLMIAGLRVAAVSTIGLVTITATLGD
                     ALGGLGFFIYEGMRKGFATEIYVGAIPVILLALLADRVFVWFQRLVTPWARTDRSAGS
                     TA"
     gene            1133..1873
                     /locus_tag="VIU37_08145"
     CDS             1133..1873
                     /locus_tag="VIU37_08145"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6013963.1"
                     /translation="MTFFADTIGWLTNPVNWDGPNGIPARLTEHIQMSVVVMLIAIAI
                     ALPVGLYIGHTRRGVSIAVGLANIGRAVPTFAMMGIIAPFTQAFDPGNGFGLYPTLLA
                     MIILGIPPILVNTYAGVDEVDRDLVEAARGMGFRGTQVLRDVEVPLALPVIVGGIRSA
                     AVQVIATTTLGAIFGIGGLGRFVVDGIAQNDNGMLFGGVVLVAGLAMLSELLLSRIQQ
                     FLDPSRGGRARPRPFLRVAEAPRQDAAA"
     gene            1988..>2753
                     /locus_tag="VIU37_08150"
     CDS             1988..>2753
                     /locus_tag="VIU37_08150"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEY6013964.1"
                     /translation="MRIRRTLALGASIMALVSACSTGGGSSATPSSEASSAPSQAASA
                     PASTEPSAAPSAAASNPTIRLGSDGFYEAKLMAEIYGQALEANGYTVDRTAIGIGARK
                     VSAAALESGQFDLKPEYIGSGLAFYDPGAQTGDPMVNRAALQAVLSGKGGGITVLAFS
                     PAADQNAFVVRKETADQYKLAKMSDLTAVVDKLKFGVATDCPTNPVCGKALKDAYGID
                     VANATKLSACDTPMAQALKGKTIDVAELCSTQPDIAV"
BASE COUNT          407 a          991 c          946 g          409 t
ORIGIN      
        1 ctcaagcgcc tgtcgctcag ccgcgtgtcg gagctcgacc tgcgaccggc ggtcgtcgcc
       61 cgggtcggcg acgcgagcgc cgaggcacgc cggcgatcgg cgaccgaacc gttcccctac
      121 ctcctgctcg tcgacgagcg ccggcggccg atcggctgga tcgccgacga cgagatcccg
      181 accgagggcc ggctgacgga gcgcatggcc gaatcgatgt cgcccctgat caaccggcgg
      241 acgaccctca aggacgcgct gtcgatgctc ctcgatgccg acgtccaggc cgggatcgtc
      301 gtcgaccgga ccggcgcggt cctcgggctc gtgaccgcgg acatgattgc ggagcgaatg
      361 cgcgagacgg ccggtgacgc gcgcttcgcg caggtcgatc tggagaccat cgagcaggca
      421 gatgtgaccg cgatccccgc gacgcggggc gaaccggcag agcccgcccc gtcatgatcg
      481 actggggctg ggtgtcggac catctcgaca aggtcgcctt tcggaccctg cagcacctct
      541 acctgacgat catcgcgctg gccgtgggct ttgcgatctc gttcgcgctg ggggtgatcg
      601 ccgcccgctg gcgcccggtc aacgcggtgg cgaccgcgat cgccggcctc gtgttcacga
      661 tccccagcct ggcgctgttc gcggcgctcg tgccggccac cggcctgacg gtcgtcacgg
      721 ccgagatccc gctcgtgctg tatacgctcg tgatcctcct gcgcaacgtg gtggccggcc
      781 tgcaggccgc ctcgcccgag gttcgcgaag ccgccgacgg catgggcttc acggcgctcg
      841 gccggctccg ctcggtggag ctgccgctcg cggtgccgct gatgatcgcg ggcctgcgcg
      901 tcgccgccgt ctcgacgatc gggctggtca cgatcacggc cacgctgggc gacgcgctgg
      961 gcggcctcgg gttcttcatc tacgagggga tgcgcaaggg gttcgccacc gagatctacg
     1021 tcggcgcgat cccggtgatc ctgctggcgc tcctcgccga ccgggtcttc gtctggttcc
     1081 agcgcctggt cacgccctgg gcgcgcacgg atcgctcggc cgggtcgacg gcatgacctt
     1141 cttcgccgac acgatcggct ggctgacgaa cccagtcaac tgggacggcc ccaacggcat
     1201 cccggcgcgg ctcaccgagc acatccagat gtcggtcgtg gtcatgctga tcgccatcgc
     1261 gatcgcgctg ccggtcgggc tgtacatcgg gcacacgcgc cgtggcgtgt cgatcgccgt
     1321 gggcctggcc aacatcggcc gggcggtgcc gaccttcgcg atgatgggga tcatcgcccc
     1381 gttcacccag gcgttcgacc cgggcaacgg gttcgggctc tatccgaccc tgcttgcgat
     1441 gatcatcctc gggatcccgc cgatcctcgt gaacacctat gccggcgtgg acgaggtcga
     1501 ccgcgacctg gtcgaggccg cccgcggcat gggcttccgc gggacgcagg tcctccgcga
     1561 cgtcgaggtc ccgctggcgc tgccggtgat cgtcggcggg atccgatcgg cggccgtcca
     1621 ggtgatcgcc acgaccacgc tcggcgcgat cttcgggatc ggcggcctcg ggcgattcgt
     1681 cgtcgacggg atcgcccaga acgacaacgg gatgctgttc ggcggcgtcg tcctggtcgc
     1741 cggcctggcg atgctcagcg agctgctcct gagccgcatc cagcagttcc tggacccgtc
     1801 gcgcggcggg cgcgccagac cccggccgtt cctccgggtc gccgaggcgc cgaggcagga
     1861 cgcggcagcc tgacactgaa aacaggacag ttcctggccg gattgttgac acgggctggt
     1921 caccattcgc tgctatagtc ccccgactgt cggcggtccc agcacgacag aacacggagg
     1981 tacccacatg cggatacgcc gcacgctcgc cctcggggcg tcgatcatgg cgctggtcag
     2041 cgcctgctcg acgggtgggg gcagcagcgc aacacccagc agcgaggcga gttcggcgcc
     2101 cagccaggcc gccagcgcgc ccgccagcac ggagcccagc gcggctccga gcgccgccgc
     2161 atcgaacccg accatccggc tcggcagcga cggcttctac gaggccaagc tgatggccga
     2221 gatctacggc caggccctcg aggccaacgg ctacacggtc gatcgcaccg cgatcggaat
     2281 cggcgcccga aaggtgtcgg cagccgccct cgagagcgga cagttcgacc tcaagcccga
     2341 gtacatcggc agcggcctcg ccttctacga cccgggcgcc cagaccggag acccgatggt
     2401 caaccgggcg gcgctccagg cggtcctgag cggcaagggc ggggggatca cggtcctcgc
     2461 gttctcgccg gccgcggacc agaacgcctt cgtcgtccgc aaggagacgg ccgaccagta
     2521 caagctggcc aagatgagcg acctgacggc ggtcgtcgac aagctcaagt tcggcgtcgc
     2581 gacggactgc ccgaccaacc cggtctgcgg caaggccctc aaggatgcct acgggatcga
     2641 cgtcgccaac gcgaccaagc tgtccgcctg cgacacgccg atggcccagg ccctcaaggg
     2701 caagaccatc gacgtcgccg agctgtgctc gacgcagccg gacatcgcgg tca
//
LOCUS       DATDDI010000566         1957 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_345346, whole genome shotgun sequence.
ACCESSION   DATDDI010000566 DATDDI010000000
VERSION     DATDDI010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345346"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VIU37_08155"
     CDS             <1..495
                     /locus_tag="VIU37_08155"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013965.1"
                     /translation="ITIHAGESFGLPSIWEAVQFAGAERLGHGVRIVDDITELPDGSV
                     ELGRLAAFVRDRRIPLEMCPTSNVHTGAAASVAEHPFDLLRRLRYRVTLNTDNRLMSG
                     VSLSSEFAAVDAAFGIGLGEMEWLTINALKSAFAPFDERLRLINEVVKPGYSHARSEQ
                     ARVV"
     gene            complement(522..1796)
                     /locus_tag="VIU37_08160"
     CDS             complement(522..1796)
                     /locus_tag="VIU37_08160"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6013966.1"
                     /translation="MKAVPSEPRPDHERRTEDRRLRELAFLHDIAQLATLARDWDELM
                     RSIIDRTTVAMDVQVCSFYLADRERTRLTLAATNGLDRTQVGKVSLPFGNGITGRVAA
                     GREPIAVDDVTHDPRFSWVRGFDIAGLTAMLSVPLIWHDDVVGVLNVQATAPRRFGGT
                     DVEFLRTIGALLAGIIEKGRLQAEIEARLEQLTALDAARAELLSVVTHELRTPLSVVR
                     VYLDLLGDAARGISPAPGADAAGDWQAAALDQVSRLDRLVDSILASVRGEGLTGLSRA
                     PFDAVEAVGETVETLRLLLRPHPIRWERPDDRLVAVGDEARFRQVLEQLLENESKYAP
                     GAEGVSIGLWRLGEEIQVYVTDDGPGVPIEDWESVFEPFVRIEGRGRSRGSGIGLFAA
                     RRLMDAMGGRIYLEPNGFGGSRFVVGLPAGQG"
BASE COUNT          275 a          704 c          702 g          276 t
ORIGIN      
        1 atcacgatcc atgccggcga gtcgttcggg ttgccgtcga tctgggaggc ggtccagttc
       61 gccggggcgg agcggctcgg tcacggcgtc cggatcgtgg acgacatcac ggagctgccc
      121 gatggctcgg ttgagctcgg ccggctggcc gcgttcgtcc gcgaccgccg gatcccgctc
      181 gagatgtgcc cgacctcgaa cgtgcacacg ggagcggccg cgtcggtcgc ggagcacccg
      241 ttcgacctgc ttcggcgtct ccgctaccgg gtgacgctca acaccgacaa ccggctgatg
      301 agcggcgtgt ccctgtcgag cgagtttgcc gcggtcgacg cggcgttcgg gatcggcctc
      361 ggcgagatgg agtggctgac gatcaacgcg ctcaagagcg ccttcgcgcc attcgacgag
      421 cgcctgcgac tgatcaacga ggtcgtgaag cccggctact cgcacgcccg atcggagcag
      481 gcccgggtcg tctagggtcg gtcgcgcgcg ggacgatgcc ctcagccctg gccggccggc
      541 aacccgacca cgaaccggct gccgccaaag ccgttcggct cgaggtagat ccgcccgccc
      601 atcgcgtcca tcagccggcg ggcggcgaac aggccgatcc ccgagccacg gctgcgaccc
      661 cggccctcga tccggacgaa cggctcgaag acgctctccc agtcctcgat cggcacgccg
      721 gggccgtcgt cggtgacgta gacctggatc tcctcgccca gccgccagag gccgatgctg
      781 acgccctcgg caccgggcgc gtacttcgat tcgttctcga gcagctgctc gagcacctgc
      841 cggaatcggg cctcgtcgcc gaccgcgacg agccgatcgt ccgggcgctc ccagcggatc
      901 ggatgcggcc ggagcagcag gcgcagcgtc tccacggtct cgccgacggc ctcgacggca
      961 tcgaacggcg cgcgcgacag tccggtcagg ccctcgccgc ggaccgaggc gaggatcgaa
     1021 tcgacgagcc ggtcgagccg cgagacctgg tccagggcag ccgcctgcca atcgccggcg
     1081 gcatccgcgc cgggtgccgg tgagatcccc ctggcggcgt cgccgagcag gtcgaggtag
     1141 acccgcacga ccgacagcgg cgtccgcagc tcgtgggtca cgaccgagag cagctcggcg
     1201 cgcgcggcgt cgagtgccgt gagctgttcg aggcgcgcct cgatctcggc ctggaggcgc
     1261 cccttctcga tgatcccggc cagcagcgcg ccgatcgtcc ggaggaactc cacgtcggtg
     1321 cctccgaagc ggcgcggcgc ggtcgcctgg acgttgagca cgccgaccac gtcgtcgtgc
     1381 cagatcagcg ggaccgacag catcgcggtc agcccggcga tgtcgaagcc gcggacccac
     1441 gagaagcgcg ggtcgtgggt cacgtcgtcg accgcgatcg gctcgcgacc ggccgccacc
     1501 cgtccggtga tgccgttccc gaacgggagg ctgaccttgc cgacctgcgt gcgatcgagc
     1561 ccgttggtgg ccgcgagcgt caaccgcgtg cgctcgcgat cggccaggta gaacgagcag
     1621 acctggacgt ccatggcgac ggtcgtgcgg tcgatgatgg agcgcatcag ctcgtcccag
     1681 tcgcgggcga gcgtggccag ctgggcgatg tcgtggagga acgcgagctc gcggagccgc
     1741 cggtcctcgg tgcggcgctc gtggtcgggg cggggctcgc tcggtacggc cttcatcggt
     1801 tccgatgatg gcgtatccgc gcgaccggtg acgcacctat cgggtctatc gccagctgct
     1861 ggcctccccg cgctggagtg cgctcgccgc ggccggggcc cggccgcagc gcctcctgct
     1921 ggccagcacc gggaccaagg atcccgccgc cccggac
//
LOCUS       DATDDI010000567         2585 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_407920, whole genome shotgun sequence.
ACCESSION   DATDDI010000567 DATDDI010000000
VERSION     DATDDI010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407920"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..951)
                     /locus_tag="VIU37_08165"
     CDS             complement(<1..951)
                     /locus_tag="VIU37_08165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013967.1"
                     /translation="MSVLIGLLLALGAMAVYLVTRTDRYYDHFVWQAAAFLEGHAAIR
                     YPVDASGTLHGNLYFQDVLPVTTTDGVPRGLLPFPPLPAVILLPFVALWGLATDAQTI
                     FTILAAVDVAICWWALGALRIRPAVRLGVTIFFAIGTVFWFTAQVATTWYQAHIVAVG
                     LTLLAIGVVLRGDREPELAADGQAERAPSAPGRGGLQAALRVDRRQFLGGLLFGLACT
                     ARLTVVFGAPFFAVVGSGEGVRRRAWSAGVGAALPIGLLVLYNLVTTGHVFHPAYEYL
                     YALEANGYPSLGYHPDWSMEDPRYLVQNVGIALLGLPEILP"
     gene            1059..>2585
                     /locus_tag="VIU37_08170"
     CDS             1059..>2585
                     /locus_tag="VIU37_08170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013968.1"
                     /translation="MTGPAFGGTGRGTGAPSRATGTRETVGAVLVVLAAGLALRLIIA
                     QLIPGSGFGVDIGAFRAWMSDLAANGPYGFYDRPFFHDYTPGYLLGLWFVGVLGNVLH
                     ALPGIGSIPSVGFLTDLDLKALPILADLAIGWLVHSMVLELGGRRRAALAAAAVAVLH
                     PISWFDSVVWGQVDSVGVVFLLLGLREIWRDRPERAAVFAVIAAIIKPQLGILIPLVA
                     IVTIRRALWPSGGAGEPARTGRPIRILTTALAGYLTAVVLCLPFGLSVVGVGGQAPFV
                     SSGLLEQIAKAAGGYPYLTVNAYNLWALVPGDLGNSLASSSAWICDFAGAADQCGAGV
                     ATLAGVPAVLVGTVLLLASMVLVLWVVARRPDRLTVLVGVAVLALAFFAVPTRVHERY
                     GYPFFAIGVILAAVSWRWRWAYVALTAATFANMYVVLTTLYPDNPSVMDWLGIGGAIR
                     SQTGVTIVAIAHTVAFAWAFVQLRRDGRRALEDELAMAGAWDDEGDWVAPPAADAATP
                     D"
BASE COUNT          351 a          920 c          923 g          391 t
ORIGIN      
        1 gggcaggatc tcgggcaggc cgagcagggc gatcccgacg ttctggacga ggtagcgcgg
       61 atcttccatc gaccagtccg ggtggtagcc gaggctcggg taaccgttcg cctcgagcgc
      121 gtagaggtac tcgtaagcgg gatggaagac gtggccggtg gtcaccaggt tgtagagcac
      181 gaggagcccg atcggcagcg cggcaccgac cccggccgac caggcgcgac gccggacgcc
      241 ttcgcccgag cccaccaccg cgaagaacgg cgcaccaaag acgaccgtca ggcgagccgt
      301 gcaggcaaga ccgaagagca ggcccccgag gaactggcgc cgatcgacgc ggagggcggc
      361 ctggagcccg ccccggcccg gggccgacgg cgcccgctca gcctgcccat cggccgcgag
      421 ctccggttcg cggtcgccac gcagcacgac cccgatcgcg aggagggtga ggccgaccgc
      481 cacgatgtgg gcctggtacc aggtggtggc gacctgggcc gtgaaccaga agaccgtgcc
      541 gatcgcgaag aagatcgtca cgcccagccg gacggccggc cggatccgga gagcgccgag
      601 cgcccaccag cagatcgcga cgtcgacggc cgccaggatc gtgaagatcg tctgggcgtc
      661 cgtggcgagg ccccacagcg ccacgaacgg cagcaggatg accgccggca agggcgggaa
      721 cggcagtaac ccacgcggca cgccatccgt cgtggtgacg ggcaggacat cctggaagta
      781 gaggttgccg tgcaacgtcc cgctggcgtc caccgggtag cggatggccg cgtggccttc
      841 gaggaaggcg gccgcctgcc acacgaaatg gtcgtagtag cggtcggtcc gggtgacgag
      901 atagaccgcc atcgccccga gcgcgagcag caacccgatc aacacggaca tccagcgggc
      961 cgttcggggg tcgggccacg ggctggtgtc ggcgtccggc aggccgccct gtgctacgct
     1021 ccgatccacc ttccacgctc gtgcaggagc cgttcccggt gactggcccc gcgttcggtg
     1081 ggaccgggcg aggcacagga gcgccgtcgc gggcgaccgg gacgcgggaa accgtcggcg
     1141 cggtcctcgt ggtcctcgca gccgggctcg ccctccgcct catcatcgca caactcatcc
     1201 cgggctccgg gttcggcgtc gacatcgggg cgttccgtgc ctggatgtcc gatctcgccg
     1261 cgaacggccc gtacgggttc tacgaccgcc ccttcttcca cgactacacg ccgggctacc
     1321 tgctcggcct gtggttcgtg ggcgtgctcg gcaacgtgct ccacgccctg cccgggatcg
     1381 gatcgatccc gtcggtcggg ttcctcaccg acctggacct caaggcgctg ccgatcctgg
     1441 ccgatctcgc catcggctgg ctggtccatt cgatggtcct cgagctcggc gggcgccggc
     1501 gggcagccct tgcagcggcc gccgtcgcgg tcctccaccc gatctcgtgg ttcgacagcg
     1561 tcgtgtgggg ccaggtcgac tcggtcggag tcgtgttcct cctgctcggc ctgcgcgaga
     1621 tctggcgcga ccggccggag cgcgcggcgg tcttcgcggt catcgccgcg atcatcaagc
     1681 cgcagctcgg aatcctgatc ccgctcgtgg cgatcgtcac catccggcgg gcgctctggc
     1741 cgtcgggcgg ggccggcgag ccggcacgga ccggacgccc cattcggatc ctgaccaccg
     1801 cgcttgccgg gtacctcacc gccgtcgtcc tgtgcctgcc gttcggcctg tcggtggtgg
     1861 gtgtcggcgg ccaggctccg ttcgtcagct cggggctcct ggagcagatc gcgaaggccg
     1921 cgggcggcta cccgtacctg acggtcaacg cctacaacct gtgggcgctc gtcccgggcg
     1981 acctgggcaa cagcctcgcc agctcgagtg cctggatctg cgatttcgcc ggcgctgccg
     2041 accagtgtgg cgccggcgtc gcgaccctgg cgggcgtccc ggcggtcctg gtcggtaccg
     2101 tcctcctgct cgcctcgatg gtcctcgtcc tgtgggtcgt ggcccgccgc ccggaccgcc
     2161 ttaccgtgct cgtcggcgtc gccgtgctgg cgctcgcgtt cttcgccgtg ccgacccgcg
     2221 tccacgagcg ctacggctat ccgttcttcg cgatcggcgt gatcctcgcc gccgtctcgt
     2281 ggcgctggcg gtgggcctat gtcgcactga ccgccgcgac gttcgccaac atgtacgtgg
     2341 tgctgaccac gctctacccg gacaacccgt cggtgatgga ctggctcggc atcggtggcg
     2401 cgatccggtc ccagaccggc gtgacgatcg tggcgatcgc ccataccgtg gccttcgcct
     2461 gggcgttcgt ccagctccgg cgcgacggtc gccgggcgct cgaagatgag cttgcgatgg
     2521 cgggagcgtg ggacgacgag ggcgattggg tggcgccgcc ggctgccgac gcggcgacgc
     2581 ccgac
//
LOCUS       DATDDI010000568         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_262439, whole genome shotgun sequence.
ACCESSION   DATDDI010000568 DATDDI010000000
VERSION     DATDDI010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262439"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..985
                     /locus_tag="VIU37_08175"
     CDS             <1..985
                     /locus_tag="VIU37_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016636114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6013969.1"
                     /translation="GLKDPRRPIGSFLFLGPTGVGKTELARALAAFLFDDEQAMVRID
                     MSEYMEKFAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYQVVLLDEIEKAHPDVFNVLL
                     QVLDDGRLTDGQGRTVDFKNTVVIMTSNVGSAAIAAAGARAGDAAYEAMKREVTDVLR
                     AQFRPEFLNRVDEVIVFHALTDADLEQIVGLLLADLDRRLSEQDLGLDLTSAARALIV
                     REGTDPAYGARPLKRTIQRLVENPLARALVSGQFRPGDRIAADADLGSGTIVFSTEGA
                     TVVTDGSSRRDARGRAGEDADAVASGAGGRKPSPLDLPPTERKRGDGELVN"
     gene            1002..1640
                     /locus_tag="VIU37_08180"
     CDS             1002..1640
                     /locus_tag="VIU37_08180"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEY6013970.1"
                     /translation="MRFEDAVRRLATLPEPLPAPADVLMPTIVGGGDLRPARTPPPGR
                     PGRPAGVLVLLYPDEAGIARVVLTERSSRDGHHSGEVSFPGGKSEPDDVDIVATALRE
                     ATEEVALDGPAAGLRVVGVLEPFWIPVSDFAVTPVLAVAERRPALAAAPAEVARIFEP
                     PIARFLPGAPIVIVERTIGEWPLRYGAYEVDGLSVWGATARILSQLGAVLAD"
     gene            complement(1668..2144)
                     /locus_tag="VIU37_08185"
     CDS             complement(1668..2144)
                     /locus_tag="VIU37_08185"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6013971.1"
                     /translation="MPIEIRRFGVGHRRPDGPPGSIGLTGQVVHSDGRGLISELAFAR
                     NARIEPHTNPNTTYFIVVEGGGWVGVGDERARIAAGEAACWPADVIHSAWTEHSEMRA
                     LVVEFAGADDAGTILGNARELSPGTSDPVARGEGALTARIEPTADRPRDRDEGEPA"
BASE COUNT          295 a          840 c          862 g          309 t
ORIGIN      
        1 cggactgaag gacccgcgcc gtccgatcgg ctcgttcctg ttcctcggcc cgacgggcgt
       61 cggcaagacc gagctcgcac gtgccctggc ggccttcctg ttcgacgacg agcaggcgat
      121 ggtccggatc gacatgagcg agtacatgga gaagttcgcg gtgtcgcggc tgatcggcgc
      181 accgcccggc tacgtcggct atgacgaggg cggccagctg accgaggcgg tccggcgccg
      241 gccgtaccag gtcgtcctgc tcgacgagat cgagaaggcg caccccgacg tgttcaacgt
      301 cctgctccag gtcctcgacg acggccggct gaccgacggg cagggccgga ccgtggactt
      361 caagaacacg gtcgtgatca tgaccagcaa cgtcggcagc gccgcgatcg ccgcagcggg
      421 cgcgcgagcc ggcgacgcgg cctacgaggc catgaagcgc gaggtgaccg acgtgcttcg
      481 cgcccagttc cgccccgagt tcctcaaccg ggtcgacgag gtcatcgtct tccacgcgct
      541 gaccgacgcc gacctcgagc agatcgtggg cctgctgctc gccgatctcg accggcgcct
      601 gtcggagcag gacctcgggc tcgacctgac gtccgccgcg cgcgcgctga tcgtccgcga
      661 ggggacggac ccggcgtacg gcgcccggcc gctcaagcgg accatccagc gattggtcga
      721 gaacccgctg gcgcgggccc tggtctccgg ccagttcagg ccgggtgacc ggatcgccgc
      781 cgatgcggat ctcggctccg gaacgatcgt gttctccacc gaaggggcga ccgtggtgac
      841 cgacggttcg tcgcggcgcg acgcgcgcgg ccgtgccggg gaggacgccg acgccgtggc
      901 atcgggggcc ggcggccgca agcccagccc actcgacctg ccgccgaccg agcgcaagcg
      961 cggcgacggc gagctcgtca actagggccg gacgccggac ggtgcggttc gaggacgcgg
     1021 tccggcgcct cgcgacgctg ccggagccgc tgccggcgcc ggccgacgtg ctgatgccga
     1081 cgatcgtcgg cggtggcgat cttcgcccgg ccaggacgcc accgcccggg cggcccggac
     1141 gcccggccgg ggtgctcgtg ctgctctacc cggacgaggc gggcatcgcc cgggtcgtcc
     1201 tgaccgagcg ctcgagccgg gacggccacc acagcggcga ggtcagcttc ccgggcggca
     1261 agtccgagcc cgatgacgtc gacatcgtgg ccaccgcgct ccgcgaggcg accgaagagg
     1321 tggcgttgga tgggccggcc gccggcctgc gcgtcgtcgg cgtcctcgag ccgttctgga
     1381 tcccggtcag cgactttgcc gtgacgccgg tcctggccgt cgccgagcgg cgaccggcgc
     1441 tggctgccgc accggccgag gtggcgcgca tcttcgagcc tcccatcgcg cggttcctgc
     1501 cgggcgcgcc catcgtcatc gtcgagcgga cgatcgggga gtggccgctc cgctacggcg
     1561 cctacgaggt ggacggcctg tccgtctggg gcgccaccgc gaggatcctc agccagctcg
     1621 gggcggtgct ggcggactga cgccggaacc gcgcgtacgc gcgagcgtca ggcgggttct
     1681 ccctcgtcgc gatcgcgcgg gcgatcggcg gtgggctcga tgcgggcggt cagggcgccc
     1741 tcgccgcggg cgaccgggtc ggacgtgccc gggctcagct cgcgcgcgtt cccgaggatg
     1801 gttcccgcgt cgtccgcccc ggcgaattcg accacgaggg cacgcatctc cgagtgctcc
     1861 gtccaggccg agtggatgac gtccgcgggc cagcaggccg cctcgccggc ggcgatccgg
     1921 gcccgctcat cgccgacgcc cacccagccg ccgccctcca cgacgatgaa gtaggtcgtg
     1981 ttcgggttgg tgtgcggctc gatccgcgcg ttccgcgcga aggccagctc ggagatcagg
     2041 cctcggccgt ccgagtggac cacctgcccc gtcaggccga tcgagcccgg cgggccgtcc
     2101 gggcgccggt gcccaacgcc gaaacgccgg atctcgatcg gcaccggcgt gcctcgccta
     2161 gcggcgccgg cgctgcgggc ggcgtccgcc gcggcggcgg atggtggcct cagggtcggc
     2221 gaacttctgc ttgctgtaat agcgctcgcg ggcgagccgc tgctcgtgcg cggcgaggat
     2281 cggcgggaag cgccggaacc ggaccc
//
LOCUS       DATDDI010000569         2223 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_657466, whole genome shotgun sequence.
ACCESSION   DATDDI010000569 DATDDI010000000
VERSION     DATDDI010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657466"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1159)
                     /locus_tag="VIU37_08190"
     CDS             complement(<1..1159)
                     /locus_tag="VIU37_08190"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEY6013972.1"
                     /translation="MPITITEVVALDVRFPTSDSLDGSDAMNERPDYSATYVTLRTSG
                     SDGLEGHGITFTTGRGNELCVAAVKALGPMVVGRTLPSIVDDFAAFWYELVGDGQLRW
                     VGPEKGVIHLATAAIVNAVWDLYAKVEGKPLWKLLVDLSPEALVRIIPFRYITDALTP
                     DEALEILRRQAPTRAVREAEMREHGYPAYTTSTGWLGYPDDKVRRLCREGVAAGWQHF
                     KIKVGVDLAADVRRVRMVRDEIGDDRMLMVDANQAWDVDQAIEWMQALAPARPLWIEE
                     PTSPDDVLGHARIARALEPFGIRVATGEHAHNRVMFKQFLQADAIGFCQVDSCRLGGV
                     NEVLAVLLLAAKFRVPVCPHAGGVGLCEYVQHLAIFDYVAVSGSLDERVVEY"
     gene            complement(1243..>2223)
                     /locus_tag="VIU37_08195"
     CDS             complement(1243..>2223)
                     /locus_tag="VIU37_08195"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEY6013973.1"
                     /translation="RTGGLLIAIALIVGACSSTGSSAAPSAAAPSAAAPSEAAPSAAA
                     GKVKIGFITKFPVDFYDIMVDAAKTWAKDHADVEVIYAQGKSGTDDEGEIAAIESMIT
                     QGVAAIAITPTSPNVQTALDKATAAGIKVVLIDNDIPDWTGKSSVVATDNLAGGKLAG
                     TWLKDNLPAGSKLAVLKGRLGNPSLEDRVTGMLDTLGDAATVVGGSPATDCDQTKGLD
                     AATDILTANPDLTAIYSACGPPALGALTAIKNAGIAAGKIVVVGFDASGGEIDAIMAG
                     EEAGSVAQFPAKMGSLGIETAYKAAKGESVEANVDTGTEMVTKDNAAQFK"
BASE COUNT          317 a          754 c          778 g          374 t
ORIGIN      
        1 cgtactcgac cacccgttcg tcgagggagc cactgacggc gacgtagtcg aagatcgcca
       61 ggtgctggac gtactcgcac agcccgacgc ccccggcatg cgggcagacc ggcacgcgga
      121 acttggcggc cagcagcagg accgcgagga cctcgttgac accgccgagc cggcagctgt
      181 cgacctggca gaagccgatg gcgtcggcct gcaggaactg cttgaacatc acccgattgt
      241 gggcgtgctc gcccgtcgcc acacggatcc cgaacggttc cagcgcgcgc gcgatccggg
      301 cgtgcccgag gacgtcgtcc gggctcgtgg gctcctcgat ccagagcggc cgcgcgggag
      361 ccagggcctg catccattcg atcgcctggt cgacgtccca ggcctggttg gcgtcgacca
      421 tgagcatccg gtcgtcgccg atctcgtcgc ggaccatgcg cacgcgccgg acgtcggccg
      481 ccaggtccac gccgaccttg atcttgaaat gctgccaacc ggccgcgaca ccctcgcgac
      541 acaggcgccg gaccttgtcg tccgggtagc cgagccaacc cgtcgacgtc gtgtacgccg
      601 gatatccgtg ctctcgcatc tcggcctcgc gtacggcgcg cgtgggtgcc tgccggcgca
      661 ggatctcgag cgcttcgtcg ggcgtcaggg cgtccgtgat gtagcggaac gggatgatcc
      721 ggacgagcgc ctcgggtgac aggtcgacga gcagcttcca gagcggcttg ccttcgacct
      781 tggcgtacag gtcccagacg gcgttgacga tggcggccgt ggccaggtgg atgacgcctt
      841 tctccggacc cacccagcgg agctggccgt cgccgacgag ctcgtaccag aaggcggcga
      901 agtcatcgac gatggacggc agcgtgcgac cgacgaccat cggcccgagc gccttgaccg
      961 cggcgacaca gagctcgttg ccgcggccgg tggtgaaggt gatcccatga ccctcgagcc
     1021 cgtccgatcc ggacgtcctg agggtcacgt aggtggccga gtagtcgggc cgctcgttca
     1081 tcgcgtccga cccgtcgagc gagtcggacg tcgggaagcg gacgtcgagc gcgacgacct
     1141 cggtgatggt gatgggcacg gggacggact ccgggctcga atgggggagt gggatcgggg
     1201 tgcccgaggg aggaggcctc gggcacccct ggagctcgcg ggttacttga actgcgcggc
     1261 gttgtccttc gtcaccatct cggtgccggt atcgacgttg gcctcgacgc tctcgccctt
     1321 ggccgccttg taggcggtct cgatcccgag cgaccccatc ttcgccggga actgggccac
     1381 ggatcccgct tcctcgccgg ccatgatcgc gtcgatctcg ccacccgagg cgtcgaaccc
     1441 gacgaccacg atcttcccgg cggcgatgcc cgcgttcttg atcgccgtca gggcgccgag
     1501 cgcgggtggc ccacaggcgg agtagatcgc ggtgagatcg ggattggcgg tcaggatgtc
     1561 ggtggcggca tccaggccct tggtctggtc gcagtcggtc gccgggcttc cgccgacgac
     1621 ggtcgccgcg tcaccgagcg tgtcgagcat gccggtcacc cggtcttcga gcgacgggtt
     1681 gcccagccgg cccttcagca cggccagctt ggaaccggcc gggaggttgt ccttgagcca
     1741 cgtcccggcg agcttgccgc cggcaaggtt gtcggtcgcc acgaccgagg atttgccggt
     1801 ccagtccggg atgtcgttgt cgatgaggac gaccttgatc ccggcggccg tcgccttgtc
     1861 gagcgcggtc tgcacgttcg ggctcgtcgg cgtgatcgcg atggcggcga cgccctgggt
     1921 gatcatcgac tcgatcgccg cgatctcacc ctcgtcgtcc gtgccgctct tgccctgggc
     1981 gtagatcact tcgacgtcag cgtgatcctt ggcccaggtc ttggctgcgt cgaccatgat
     2041 gtcgtagaag tcgaccggga acttggtgat gaacccgatc ttgaccttgc cggccgcagc
     2101 gctcggtgcc gcctcgcttg gcgctgcggc actcggcgcc gccgcgctgg gcgccgcgct
     2161 cgaaccggtg ctcgagcagg cgcccacgat cagggcgatg gcgatcagca ggccgccagt
     2221 tct
//
LOCUS       DATDDI010000570         1789 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_491222, whole genome shotgun sequence.
ACCESSION   DATDDI010000570 DATDDI010000000
VERSION     DATDDI010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491222"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VIU37_08200"
     CDS             <1..402
                     /locus_tag="VIU37_08200"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6013974.1"
                     /translation="ETFAQAWLSRDRYTDHDEGPIAPWLFGLARHVLAASVRRQALER
                     SARDRLQLQLESTSTTTIDPAWLDGLDDDLTAALAELPDGQRRAIELRVVADRAYDDV
                     ARRLDITPQAARVRVHRGLSAIRRRLAQTSQ"
     gene            419..919
                     /locus_tag="VIU37_08205"
     CDS             419..919
                     /locus_tag="VIU37_08205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013975.1"
                     /translation="MTHDPTQPTLQAVGDALAAATDRDLRRGRSRPLRRIALALAALA
                     IVGAGTAAAAGLFSPKQVAEGMPAGTAIFGQTDPTCVLNPDDGSYRCTLSKPPADEVT
                     DANGNPAYLGTKEVVAIDGVVAGGCIGLDQAGMTWDCYVGQAAVDHEIISQDFLGEPV
                     LGPGHG"
     gene            1024..1563
                     /locus_tag="VIU37_08210"
     CDS             1024..1563
                     /locus_tag="VIU37_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013976.1"
                     /translation="MDSPSPVDPASVTEPVERALDGLIVGAAASFGLSVAAVFATVFA
                     VEGQVHAIAHLSLPALMAAVIVIRGIHLLRRHPAARDDVWTRARAVSAFDSRLARTLS
                     YAVPLAWLAGSGAILIRHASMLQDLLLAGGLWLPLGAALWILATFAWTDACRDRVGAG
                     IDESDRRFRDYWRNVGLRR"
BASE COUNT          244 a          702 c          586 g          257 t
ORIGIN      
        1 gagacgttcg cccaggcctg gctgtcgcgc gatcgctaca ccgaccacga cgaggggccg
       61 atcgccccgt ggctgttcgg gctcgcccgg cacgtgctcg cggcgtccgt gcgccggcag
      121 gcgctcgaac gttctgcccg cgaccgactc cagctgcagc tcgagtcgac ctccaccacc
      181 accatcgatc cggcctggct cgacggcctc gacgacgacc tgaccgcggc gctcgccgag
      241 ctcccggacg gccagcggcg ggccatcgag ctgcgcgtcg tcgccgaccg ggcctacgac
      301 gacgtcgccc gacggctcga catcacgcca caggccgctc gggtccgcgt ccatcgcggc
      361 ctgagcgcga tccgtcgtcg actcgcccag acctctcagt agacaggagc tgcccatcat
      421 gactcacgat ccgacccagc cgacgctgca ggcggtcggc gacgcgctcg ccgccgccac
      481 cgatcgcgac ctccgccggg gccgctcccg ccccctgcgg cgcatcgcgc tcgcgctcgc
      541 cgccctcgcg atcgtcggtg ccgggaccgc cgccgcggcc ggactgttca gtcccaagca
      601 ggtcgccgag gggatgccgg ccggcaccgc gatcttcggc cagaccgacc cgacctgcgt
      661 cctcaacccg gacgacggca gctatcgctg cacgttgtcg aagccgccgg cggacgaggt
      721 caccgacgcc aacggcaacc cggcctatct cggcaccaag gaggtcgtcg ccatcgacgg
      781 cgtcgtcgcc gggggctgca tcggcctcga tcaggccggc atgacctggg actgctacgt
      841 cggccaggcc gccgtcgatc acgagatcat cagccaggac ttcctcggcg agccggtcct
      901 cggcccaggt cacggctgag cctcggcacg gccgacttgg ccccgtcatc cggtgacgcg
      961 cgacccgtcg caacggggtc gcgcggcact ggacgtcgcg cacggaccgg gcacaatgcg
     1021 cacgtggaca gcccgtcgcc ggtcgatccg gccagtgtca ccgaacccgt cgaacgcgcg
     1081 ctcgacgggt tgatcgtcgg agccgcggcc tcattcggcc tgtccgtcgc cgccgtcttc
     1141 gcgaccgtct tcgccgtcga ggggcaggtc cacgcgatcg cgcacctctc gctcccggct
     1201 ctgatggcgg ccgtgatcgt catccggggg atccacctcc tgcgccgaca ccccgcggcg
     1261 agggatgacg tgtggacccg cgctcgcgcc gtcagcgcct tcgacagccg gctcgcacgc
     1321 acgctgtcct atgccgtgcc gctcgcctgg ctcgcgggga gcggcgcgat cctgatccgc
     1381 catgcctcga tgctccagga cctgctgctg gccggcgggc tctggctgcc gctcggtgcc
     1441 gcgttgtgga tcctcgccac gttcgcctgg acggacgcct gtcgcgacag ggtcggcgcg
     1501 ggcatcgacg agtcggaccg tcgcttccgc gattactggc ggaacgtcgg cctgcgccgc
     1561 tgacgcaccc ctgggactac ccgccggtct gactgccggt tcgcctcgtg ttgcggcctg
     1621 gcgtgaccgc cgacggaccc ggccgggcca gacggcccgg tccgaagggc agatgagagg
     1681 tgctgcaagt ccgacccgaa acatgccgct tgtcacctgc cttccacccg tgcctggacc
     1741 cacagtctcc ccaggacatt caaggcttca ccacacagga agggacaca
//
LOCUS       DATDDI010000571         1964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_199856, whole genome shotgun sequence.
ACCESSION   DATDDI010000571 DATDDI010000000
VERSION     DATDDI010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199856"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1964
                     /locus_tag="VIU37_08215"
     CDS             <1..>1964
                     /locus_tag="VIU37_08215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013977.1"
                     /translation="LLHAILPASRLATHPGRAAALRIAGGHVRPPTASQWRERNPWLA
                     FEDAFRGVRGFIQRLDGGSLGPVQARLGEDLRSLGEGTATAVLGLSGPSGLLSLRDDS
                     TGYGRTAPTPRVRLILGQPPMRPSLERLASAYHGTAWVLGREAAGLLPIDALASSSLR
                     APWSWQAASIARALEAVEPVMARDGRVVQLVDGGAEAVVAAVMGGATAGYRVLSARLA
                     DPDDDAAGIVELLPPGGLLPPGPRTRGNVGLEPTPGGAGDPDVVPGRGLFAPPERFDQ
                     RPFSAADTARTVTETTVAILRARGEPARYERVLGEVLVGLDRAGQLRRLAAATLPAEA
                     VPDDGGTASGGGPGRTSDPPEADVRLGPDAATGATARVRRPISARDLSPDPVEGLLSL
                     IRDELTRPTQRRVVEIEPGRWWLTEREDRDAAAVPLADRVEWAVFSLLSTAGPISEAA
                     FYERIASLFTSHDLPDEGLVRACLDSYRSLASTPDGLITGDDLLRRSQEHTELLGILA
                     DAGHRLGMRVWIGRSEQSRRTARGPLVDRLDEREQRVYLGGISRAGDALAEVDAIWYI
                     RSKVALLFEVEWTAMLGEPLLRRHGRIPPDESIIRFLVVAPERAELVRYKLERSPLLR
                     AALAEGTWHIVKSDHLRTFLARDPLDLADL"
BASE COUNT          237 a          731 c          739 g          257 t
ORIGIN      
        1 ctcctgcacg cgatcctgcc cgccagccgg ctggcgacgc atccgggtcg cgccgcggcg
       61 ctgcgcatcg ccggcgggca cgtgcgacca ccgaccgctt cgcagtggcg cgagcggaac
      121 ccgtggctgg ccttcgagga cgcgttccgc ggcgtgcgcg ggttcatcca gcgccttgac
      181 ggtgggtcgc tgggcccggt ccaggctcga ctcggcgagg acctgcgaag cctgggggag
      241 gggacggcga cggcggtcct cgggctgtcc gggccgtcgg ggctgctgtc gctccgcgac
      301 gactcgacgg ggtacggacg gacggcaccc acgccgcgcg tccggctgat cctcggccaa
      361 ccgccgatgc gcccgagcct ggaacgcctg gcctcggcct accacgggac cgcgtgggtg
      421 ctcggccggg aagcggccgg gctgctgccg atcgacgcgc tcgcgagctc ctcgctgcgc
      481 gccccgtgga gctggcaggc ggcctcgatc gcacgtgcgc tcgaagccgt cgagccggtc
      541 atggcccgcg acggccgcgt cgtccagctc gtggacggag gggcggaggc ggtcgtggcc
      601 gcggtgatgg gtggcgcgac cgccggctac cgggtcctga gcgcccggct ggccgacccc
      661 gacgacgacg ctgcgggcat cgtggagctg ctgccgccgg gcggtctcct gccgcccggt
      721 ccccggacac gcggcaacgt cgggctggaa ccgacgcccg gcggtgcggg cgatcccgac
      781 gtcgtgcccg gccggggcct gttcgcgccg ccggagcggt tcgaccagcg tccgttctcc
      841 gcggccgaca cggcgaggac ggtgaccgag acgacggtcg cgatcctgcg ggcgcgtggc
      901 gagccggcac gctacgaacg agtcctcggc gaggtgctcg tcggactcga ccgggccggc
      961 cagctccgcc ggctggccgc ggcaacgctc ccggccgaag cggtccccga cgatggcggg
     1021 acggcgtcgg gtggcggacc agggcgcacg tccgacccgc cggaggccga cgttcgcctc
     1081 ggccccgatg cggcgaccgg tgcgaccgcg cgggtccgtc ggccgatctc ggcgcgcgac
     1141 ctcagccccg accccgtcga gggcctgctc agcctgatcc gcgacgagct gacccgcccg
     1201 acccagcgac gcgtcgtcga gatcgagccc ggccgctggt ggctgaccga gcgcgaggat
     1261 cgcgacgcgg ccgccgtccc gctcgccgat cgcgtcgagt gggcggtctt cagcctgctg
     1321 tccacggccg gtccgatctc ggaggcggcg ttctacgagc ggatcgcgtc gctgttcacg
     1381 agccacgatc tccccgacga aggtctcgtc cgcgcctgcc tcgacagcta ccgcagcctc
     1441 gcgagcacgc cggacgggct gatcaccggc gacgacctcc tgcgccgcag ccaggagcac
     1501 accgagctgc tggggatcct tgccgacgcg ggccaccggc tgggcatgcg cgtctggatc
     1561 ggccggtcgg agcagtcgag acggacggcc cggggtcccc tcgtcgatcg gctcgacgag
     1621 cgggagcagc gcgtgtacct cggggggatc agccgtgccg gcgacgcgct ggccgaggtc
     1681 gatgccatct ggtacatccg gagcaaggtc gcgctgctgt tcgaggtcga atggacggcc
     1741 atgctcggcg agccgctcct gcgtcgccac ggacggatcc cgcccgacga gtcgatcatc
     1801 cggttcctcg tggtcgcgcc cgagcgcgcc gagctcgtgc gctacaagct cgaacggtcg
     1861 ccgctgctgc gcgccgcact ggcggaggga acctggcaca tcgtcaagtc ggaccatctc
     1921 cggacgttcc tggcgcgcga cccgctcgac ctggccgacc tcga
//
LOCUS       DATDDI010000572         2026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_615898, whole genome shotgun sequence.
ACCESSION   DATDDI010000572 DATDDI010000000
VERSION     DATDDI010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_615898"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VIU37_08220"
     CDS             <1..621
                     /locus_tag="VIU37_08220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013978.1"
                     /translation="AVVDGFVIDVVGPDELVEIQTASFASVRRKLERLVVAHRVVLVH
                     PIPIEKWLVRVDGDGAILWRRRSPKRGLALDLFDELVRLPGLVAHPNFRIELALVAEE
                     EVRGPIPDGARYRYPREWWRLDRRLLQVVETRRVDTPADLLGLLPAGLPESFTTADIV
                     AATGRSRRLAMRAVYCLERCGSVTRLPRRGRLQAYGRVPPEVDTAI"
     gene            complement(618..1496)
                     /locus_tag="VIU37_08225"
     CDS             complement(618..1496)
                     /locus_tag="VIU37_08225"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HEY6013979.1"
                     /translation="MAGQPASPRVLLDVPITYDVGDRLIHAPMVAGTVRGVPTRLILD
                     TGSSDHVLTRELADRAALPARPGEPGTDGTGASVLSWTLGDVPLAIDGVSFDLHDVVA
                     IDGPPPFAGWGVGGFLSPQHLHPTAWVVLDLAGARLILLAGGTREVADWLAARRPGMR
                     LVRLERVAGDATILVRAALAPFDAVVTLLDSGGKSTEVVAGAVPGLEGGSRVVSGHGV
                     GGDEIAGSGVEARTLVVGDATVAIPGLIVRDAMDGQDALVGMNVLAGTVLAVRADRTQ
                     PVLWLVPGPVTADGSG"
     gene            complement(1548..>2026)
                     /gene="amrA"
                     /locus_tag="VIU37_08230"
     CDS             complement(1548..>2026)
                     /gene="amrA"
                     /locus_tag="VIU37_08230"
                     /inference="COORDINATES: protein motif:HMM:TIGR04335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein A"
                     /protein_id="HEY6013980.1"
                     /translation="DRALDRIPTDVEPAAAFVTLTEDGELRGCMGSLEPTRGLGDTVV
                     TSAIMAALDDPRFLPVTADELPSIHVEISVLGPPTPVADVTAFRPGIDGVIVDRKGRR
                     GLLLPEVATDFGWDAAQMFDGVCRKAGLPRDAWRDPATRLSTFRTIRFGGPASAAG"
BASE COUNT          280 a          743 c          754 g          249 t
ORIGIN      
        1 gcggtcgtgg atggcttcgt catcgacgtg gtaggtcccg atgagctcgt cgagatccag
       61 accgcgagct tcgcctcggt ccggcgcaag ctcgagcggc tggtcgtcgc gcaccgcgtc
      121 gtcctggtcc acccgatccc gatcgagaaa tggctcgtcc gcgtcgacgg cgacggcgcg
      181 atcctgtggc gccgccggtc cccgaagcgc gggctcgcgc tcgacctgtt cgacgagctc
      241 gtgcgcctgc cggggctcgt cgcccatccc aacttccgga tcgagctcgc gctcgttgcc
      301 gaggaggagg tccgcgggcc gatccccgac ggcgcccggt accgctatcc gcgcgagtgg
      361 tggcggctcg accggcgcct gctccaggtc gtcgagacgc gacgggtcga cacgcccgcc
      421 gacctgctgg ggctgctgcc ggccggcctg cccgagtcgt tcaccacggc cgacatcgtc
      481 gccgcgaccg ggcgttcgag gcgattggcg atgcgagccg tgtactgcct cgagcggtgc
      541 gggagcgtga cgcgcctgcc ccggcgcggc cggctgcagg cctacgggcg cgtgccaccg
      601 gaggtcgaca ccgcgatcta gccggacccg tcggcggtga cgggcccggg gacgagccag
      661 aggacgggct gggtccgatc ggctcgcacc gcgagcacgg tgccggcgag cacgttcatc
      721 ccgaccaggg cgtcctggcc gtccatcgca tcgcggacga tgagccccgg gatcgccacc
      781 gtggcatcgc ccacgacgag cgtccgcgcc tcgacgccgg agccggcgat ctcgtcgccg
      841 cccaccccgt gaccggacac gactcgcgac ccgccctcga gaccgggcac ggcgccggcg
      901 acgacctcgg tcgacttgcc gcccgaatcg aggagcgtca cgaccgcatc gaacggcgcg
      961 agcgccgccc ggacgaggat cgtcgcatcg ccggcgacgc gctcgagccg cacgaggcgc
     1021 atgcccggcc ggcgcgccgc cagccagtcg gcgacctcgc gcgtgccgcc ggcgagcagg
     1081 atcagccgcg ctccggcgag atcgaggacg acccaggcgg tcgggtggag gtgctgcggg
     1141 ctgaggaacc cgccgacgcc ccaacccgcg aacggcggcg gcccgtcgat cgccaccacg
     1201 tcgtgcaggt cgaacgacac tccgtcgatc gccaacggga catcgcccag cgtccaggag
     1261 aggacggacg cgccggtgcc gtcggtgccg ggttcgcccg gccgggcggg cagcgcagcc
     1321 cggtccgcga gctcgcgcgt gagcacgtgg tcgctcgagc cggtgtcgag gatcagcctg
     1381 gttggcacgc cccggaccgt gccggcgacc atcggcgcgt ggatcagtcg atcgccgacg
     1441 tcgtaggtga tcgggacgtc caggaggacg cgcggcgacg cgggttggcc ggccatcccc
     1501 ggcagggtac ccgaggacac cgggcagtcg cgaaggcgcg ccggaaccta ccctgccgcc
     1561 gaggccgggc cgccgaaccg gatcgtgcgg aaggtgctca gccgggtcgc cgggtcgcgc
     1621 caggcgtcgc ggggcagacc ggccttccgg cacacgccgt cgaacatctg cgcggcatcc
     1681 caaccgaagt cggtcgcgac ttcgggaagg agcaggccgc ggcgaccctt ccgatcgacg
     1741 atgacaccgt cgatcccggg gcggaatgcg gtgacgtcgg cgaccggcgt cggagggccg
     1801 agcaccgaga tctcgacgtg gatcgacggc agctcgtcgg ccgtgaccgg caggaaccgc
     1861 gggtcgtcca gcgcggccat gatcgccgac gtgacgaccg tgtcgccgag gccgcgggtc
     1921 ggctcgaggc tgcccatgca gccgcgcagc tcgccgtcct ccgtcagcgt gacgaaggct
     1981 gctgctggct cgacatcggt cgggatccgg tcgagcgcgc ggtcga
//
LOCUS       DATDDI010000573         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_75324, whole genome shotgun sequence.
ACCESSION   DATDDI010000573 DATDDI010000000
VERSION     DATDDI010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75324"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..554
                     /locus_tag="VIU37_08235"
     CDS             81..554
                     /locus_tag="VIU37_08235"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEY6013981.1"
                     /translation="MSESVAVRRDIVTWDDLDRMIGELAERLLSEHFDVMLAITRGGL
                     VPAGMLAYRLRIRNILVAAVEFYDDHGQPGPHPTFLQFPADPLLRGQRILVVDEVWDS
                     GTTIHAVTERIRQAGGHPTTAVLHWKPTHSVVPGQPDVHAVTTDAWVVYPFKAGG"
     gene            601..1680
                     /locus_tag="VIU37_08240"
     CDS             601..1680
                     /locus_tag="VIU37_08240"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEY6013982.1"
                     /translation="MTRVVLLVGTKKGAFILESDADRRTWSSRGPLCEGWPIHDLIVE
                     PGSGAILAAGGSPWYGPAVWRSEDGGTTWTHSSAGLTYGDGAEPGKTVWSLSTTPDGG
                     LLAGVEPAGLFRSDDRGATWRHVEGLTNHPTRPTWGPGAGGLILHTIVPHPTDTARTW
                     VGISAVGVFETRDGGTSWEPRNVGVRAEFNPENRFPVTGQCVHKFALAGGESELLYQR
                     NHCGVYRSDDGSATWQEITANLPTDFGFSMVTHPRDPQTCWLIPLSVPEAGRYMPDGH
                     AAVWRTHDGGTSWIRADDGLPTRDAFLSVLREAMARDTLDPVGIAFGTSTGQLWHSAD
                     EGVSWQMITDTLPEIWAVESVVVDG"
BASE COUNT          258 a          642 c          598 g          234 t
ORIGIN      
        1 ccgcacacgc tcgaggtgat ccgggcgaca gccctcgacg cgcgcggcag ccaggacgcc
       61 acagccggag gggtggaacc gtgagtgaat ccgtggcggt ccgccgggac atcgtgacct
      121 gggacgacct ggaccggatg atcggcgaac tcgctgagcg tctcctcagc gagcacttcg
      181 acgtgatgct ggcgatcacc cggggcgggc tggtgccggc cggcatgctc gcctaccggt
      241 tgcggatccg gaacatcctg gtcgccgcgg tcgagttcta cgacgatcac gggcagcccg
      301 gcccgcatcc cacgttcctc cagttcccgg ccgacccgct cctgcgcggc cagcgcatcc
      361 tcgtcgtcga cgaggtctgg gacagcggca ccacgatcca cgccgtcacc gagcggatcc
      421 gccaggccgg cggccacccg accaccgccg tcctccactg gaagccgacc cactcggtcg
      481 tccccgggca gcccgacgtc catgccgtga cgaccgatgc ctgggtcgtc tacccgttca
      541 aggcgggcgg ctagaatcac cgacttcgcc cccgaaccgc tgaggagctg aggagccgag
      601 atgacccgag tcgtgctgct ggtggggacc aagaagggcg cattcatcct cgagagcgac
      661 gcggaccgcc ggacctggtc cagccgcggg cccctgtgcg agggctggcc gatccacgac
      721 ctgatcgtcg agccgggaag cggcgcgatc ctggccgcgg gcggcagccc gtggtacggc
      781 ccggccgtct ggcggtccga ggacgggggg acgacctgga cgcactcctc ggccgggctc
      841 acgtacggcg acggggcgga accgggcaag accgtctggt cgctgtcgac cacgccggat
      901 ggtgggctgc tggccggcgt cgagccggcc gggctcttcc gcagcgacga ccgcggggcc
      961 acctggcggc acgtcgaggg cctgaccaac catccgaccc gcccgacctg gggacccggc
     1021 gcgggcggcc tcatcctcca caccatcgtc ccccacccga ccgacacggc caggacgtgg
     1081 gtcggcatct ccgcggtcgg ggtgttcgag acgcgtgacg gggggacgtc atgggagccg
     1141 cgcaacgtcg gcgtccgcgc cgagttcaac cccgagaacc ggttcccggt gaccggccag
     1201 tgcgtccaca agttcgcgct ggcgggcggc gagtccgagc tgctctacca gcgcaaccac
     1261 tgcggcgtct accgatccga cgacggctcc gccacctggc aggagatcac tgccaacctg
     1321 ccgacggact tcgggttctc gatggtgacc cacccgcggg atccgcagac ctgctggctc
     1381 atccccctca gtgtccccga ggcggggcgc tacatgcccg acgggcacgc cgccgtctgg
     1441 cggacccacg acggcggcac ctcgtggatc cgtgccgacg acggcctccc gacccgtgac
     1501 gccttcctgt cggtcctgcg cgaggcgatg gcccgcgaca cgctcgatcc cgtcgggatc
     1561 gccttcggga ccagcaccgg ccagctgtgg cacagcgccg acgagggcgt gagctggcag
     1621 atgatcaccg acaccctgcc ggagatctgg gcggtcgaat cggtcgtcgt cgacggctga
     1681 agcgggcact gcatcgcatg gcgaccgtcc tgctgccccg atccctgctc gc
//
LOCUS       DATDDI010000574         2727 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_33361, whole genome shotgun sequence.
ACCESSION   DATDDI010000574 DATDDI010000000
VERSION     DATDDI010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2727
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33361"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..1036)
                     /locus_tag="VIU37_08245"
     CDS             complement(17..1036)
                     /locus_tag="VIU37_08245"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HEY6013983.1"
                     /translation="MSTDGPSRDPSRSLIAAIEGVAAAGDIETALDAIVTAAATALGA
                     TMGAILMQDPDRPGLQPVATYGFEEAAAARLALDVADTSHPFAEAAHGRSATFDREGT
                     MADGSSFVGAYLPLVVSSGGVQAVVGSMGLGWPSPHALDDGERELLRAFASLASVAVD
                     RAQLAATVAERSDWFERMAHTDPLTGLANERTVARILELELARAGRQGSEVSLAMFDI
                     DDFQATNLSGGHEAGDDVLRRVAEVLAESVRLVDTVGRVGGDEFVLVAPGSAGMTVAQ
                     RILDGIRALPAVAGRPITVSAGVARFPVDGASSEALIAAASSALGRARDEGRGTVAAG
                     ATPEG"
     gene            1152..1481
                     /locus_tag="VIU37_08250"
     CDS             1152..1481
                     /locus_tag="VIU37_08250"
                     /inference="COORDINATES: protein motif:HMM:NF017920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP receptor"
                     /protein_id="HEY6013984.1"
                     /translation="MKLIVAIVHNEDAGALVNALLDKEFRATRLNSSGGFLKQSNATI
                     FLGVEDADVDEVMTIVRANCTSRTQVVNPMPPIMEPGEFFMPYPLEVEVGGATVFVLP
                     VERFERL"
     gene            1508..2008
                     /locus_tag="VIU37_08255"
     CDS             1508..2008
                     /locus_tag="VIU37_08255"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6013985.1"
                     /translation="MSFRPDIVAVWIYRVPDPARPEALEILLIRRAAGRELAGLWQCV
                     TGSIEPDERIALAALRELSEETGIAGDAIEAFYDLDLVSQFHWPSVDGVLSEVVFAVR
                     VAPGTEPALSAEHDAVRWVAPTGAIELSVWPAYREAIERIVTILPIPDRAAWFETDLD
                     GLRIRG"
     gene            complement(2285..>2727)
                     /locus_tag="VIU37_08260"
     CDS             complement(2285..>2727)
                     /locus_tag="VIU37_08260"
                     /inference="COORDINATES: protein motif:HMM:NF015909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013986.1"
                     /translation="TDEEYEEFLRSCPEFERMLIRSGLIVIKYWFSVSDDEQERRFQA
                     RIDNPTKRWKLSPMDLQSRARWVEYSMAKDEMFAHTDIKQSPWYVVNGDDKKRARLNV
                     IHHLLSLIPYEDLTPEPIILPPRQRDNGYVRPPITDQTFVPEVY"
BASE COUNT          394 a          993 c          931 g          409 t
ORIGIN      
        1 cgcgcgggac ttcggctcag ccctccggtg tcgccccggc ggccaccgtg ccgcggccct
       61 cgtcccgcgc gcgcccgagg gcgctcgagg ccgccgcgat caacgcctcg ctgctggctc
      121 cgtcgaccgg gaaccgcgcc acgcctgcgg agaccgtgat cggccgtccc gcgacggcgg
      181 gcagcgcgcg aatgccgtcg aggatccgct gggccacggt catgcccgcc gagcccggtg
      241 ccacgagcac gaactcgtcg ccgccgaccc gcccgacggt gtccacgagc cggaccgatt
      301 cggcgagcac ctcggcgacc cgccgcagga cgtcgtcacc ggcctcgtgg ccgccgctca
      361 ggttggtcgc ctggaagtcg tcgatgtcga acatcgcgag cgagacctcg ctgccctggc
      421 gaccggcccg ggccagctcg agctcgagga tccgggcgac ggtgcgctcg ttggccagac
      481 cggtcaacgg gtccgtgtgc gccatccgct cgaaccagtc ggatcgctcc gccacggtcg
      541 ccgccagctg cgcccgatcc accgcgaccg aggcgagcga cgcgaacgcc cgcagcagct
      601 cgcgttcgcc gtcgtcgagc gcgtgcggcg agggccagcc gagccccatc gagccgacga
      661 cggcctggac gccgccgctg gacacgacga gcggcaggta ggcgccgacg aacgacgaac
      721 cgtcggccat ggtcccctcc cgatcgaagg tggcactccg gccgtgcgcc gcctcggcga
      781 acgggtgcga cgtgtccgcg acgtccagcg ccaggcgtgc cgccgcggcc tcctcgaagc
      841 cgtaggtcgc caccggctgg agcccgggtc ggtccggatc ctgcatgagg atcgcgccca
      901 tcgtcgcgcc gagcgccgtg gcggccgccg tcacgatcgc gtcgagcgcg gtctcgatgt
      961 caccggcggc cgcgacgccc tcgatcgcgg cgatgagcga acggctggga tctcgggacg
     1021 gtccgtctgt cgacacggat ggctcctgca cgcaactgga ttcctcgggg ccggcatcgt
     1081 acacctcgcg atttgccctc gaacggcccg cgacattgac ccgggactct cgtgacgccg
     1141 atactccgcg cgtgaagctc atcgtggcca tcgtgcacaa cgaggacgcc ggcgccctcg
     1201 tcaacgccct cctcgacaag gagttccggg caacccgcct caacagctcc ggcggcttcc
     1261 tcaagcagtc caacgcgacg atcttcctgg gcgtcgagga cgccgacgtc gacgaggtca
     1321 tgaccatcgt ccgggcgaac tgcacctcgc ggacgcaggt cgtcaatccg atgccgccga
     1381 tcatggagcc gggcgagttc ttcatgccct atccgctcga ggtggaggtc ggcggggcga
     1441 ccgtcttcgt cctgcccgtg gaacggttcg agcggctcta gccgccgctt ccgaacgccg
     1501 tcccgcgatg tccttccggc ccgacatcgt cgcggtctgg atctaccggg tccccgatcc
     1561 cgcccgaccc gaggcgctcg agatcctgct gatccggcgc gccgccggtc gcgagctcgc
     1621 cgggctctgg cagtgcgtga ccgggtccat agaacccgac gagcgaatcg cgctcgcggc
     1681 gctgcgcgag ctgagcgagg agaccgggat cgccggcgat gcgatcgagg cgttctacga
     1741 cctggacctg gtcagccagt tccactggcc gagcgtcgat ggcgtgctgt cggaggtcgt
     1801 cttcgcggtg cgcgtcgcgc cggggaccga gccggccctg tcggccgagc acgatgccgt
     1861 gcgctgggtc gccccaaccg gggcgatcga gctgtccgtc tggccggcct atcgcgaagc
     1921 gatcgagcgg atcgtgacga tcctaccgat ccccgaccga gcggcctggt tcgagacgga
     1981 tctcgacggg ctgcgaatac ggggctagcg tgcacagcct gccggcaggg tagtccgtcc
     2041 gaacctcgga gcccgcaagg tggactacgc gagccgccgg gcgattgccc gcctcctgcg
     2101 cactacgtcg gccggaccgg gacattccgt cgcaatccgc cgatatggcg ggtcaggccc
     2161 ggctgtcgtt cgacgatcgg cccacccgat gcgccaaacg tcggccaagg accctgccga
     2221 acgacgcaat gcccaccggc tgcgcagccc gcgcgtcgtg aactgccggc cggatcgctc
     2281 gccgtcagta cacctcggga acgaaggtct ggtccgtgat cggcggccgg acgtagccgt
     2341 tgtcgcgctg ccgcggcggc aggatgatcg gctcgggggt caggtcctcg tacgggatca
     2401 ggctcagcag gtggtggatc acgttcaggc gggcgcgctt cttgtcgtcg ccattgacca
     2461 cgtaccaggg cgactgcttg atgtccgtgt gggcgaacat ctcgtccttg gccatggagt
     2521 actcgaccca gcgggcacgt gactggaggt ccatcgggct cagcttccag cgcttggtcg
     2581 gattgtcgat ccgcgcctgg aaccggcgct cctgctcgtc gtcgctgacc gagaaccagt
     2641 acttgatcac gatcagaccc gagcggatca gcatccgctc gaactccggg cacgagcgca
     2701 ggaactcctc gtattcctcg tcggtgc
//
LOCUS       DATDDI010000575         1954 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_678414, whole genome shotgun sequence.
ACCESSION   DATDDI010000575 DATDDI010000000
VERSION     DATDDI010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678414"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1954)
                     /locus_tag="VIU37_08265"
     CDS             complement(<1..>1954)
                     /locus_tag="VIU37_08265"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY6013987.1"
                     /translation="LDAIPDEELDTLARWGMTGLWLIGLWQRSVASETIKRWRGNQDA
                     VASAYSLDDYRIADDLGGEDALGRLRERAWRHGIRLASDMVPNHMGLDSRWVIDHPER
                     FIGLDEPPYPAYRFEGANLSTDPRVEIRIEDHYWDDSDAAVVFKRFDRWSGDVRYVYH
                     GNDGTSFPWNDTAQLNFLDPEVREQVILTILEVARRFPIIRFDAAMVLAKKHIERLWW
                     PEPGTGGGIPSRAEHAIPKAEFDARMPVEFWREVVDRVAAEIPGTLLLAEAFWLLEGY
                     FVRTLGMHRVYNSAFMHMLRDENGAGYRKVIRETIEFDPEILKRYVNFMTNPDEETAL
                     EQFGKGDKYFGVATVLATLPGLPMLGHGQVQGFGEKYGMEYRRATLDERPDAGLVERH
                     EREIFPLLHRRAWFAEARDFLLYDLLTDHGAVDEHVLAYSNGTGPQRSLVVYHDRFAS
                     TSGTIRDSATYALKAPDGSKHLVRRSLAEGLGLPNDAGAFVIFRDARTGLESIRSCRE
                     LWEHGLRLSLEAYEAHVYWEFREVHDGVAGQWGRLAERLRGTAVPSLEDALRELQLEP
                     VHGPLRDAFGGGLGGSIIIDASPSEADLAELETRAAAFLGALAEATGVAGDAAILAAA
                     IRRRTEAALPALRELTGRVDRAGLVGW"
BASE COUNT          279 a          691 c          694 g          290 t
ORIGIN      
        1 gccagccaac gagaccggcg cggtccacgc ggccggtcag ctcgcgcagt gccggcagcg
       61 ccgcctcggt ccggcgtcgg atggccgccg ccaggatcgc cgcgtcaccg gcgacgcccg
      121 tcgcctcggc cagggccccg aggaaggccg ccgcccgggt ctcgagctcg gccaggtcgg
      181 cctccgacgg cgacgcgtcg atgatgatcg agccgccgag cccgccgccg aacgcgtccc
      241 gcaacgggcc gtgcaccggc tcgagctgga gctcgcggag ggcgtcctcg agcgacggca
      301 cggccgtccc gcggagccgc tcggcgaggc ggccccattg cccggccacc ccgtcgtgga
      361 cctcgcggaa ctcccagtag acgtgcgcct cgtaggcctc cagcgacagg cggaggccgt
      421 gttcccacag ctcgcggcac gaacggatgg actcgaggcc ggtccgggcg tcgcggaaga
      481 tgacgaaggc gcccgcgtcg ttcggcagcc ccaggccctc cgccagcgag cggcgaacga
      541 ggtgcttgga cccgtcgggc gccttgagcg cgtaggtggc ggagtcccgg atggtgccgc
      601 tcgtggatgc gaagcggtcg tgatagacga ccagcgaccg ttgcggcccg gtcccgttgg
      661 agtaggcgag gacgtgctcg tcgaccgccc cgtggtcggt cagcaggtcg tagagcagga
      721 agtcgcgggc ctccgcgaac cacgcccgcc ggtggagcag cgggaagatc tcgcgctcgt
      781 gccgttcgac caggccggca tccggccgct cgtcgagtgt cgctcgccgg tactccatgc
      841 cgtatttctc gccaaagccc tggacctggc cgtgcccgag catcggcagg ccgggcagcg
      901 tcgccaggac cgtggccaca ccgaagtact tgtcgccctt gccgaactgc tcgagggcgg
      961 tctcctcgtc ggggttggtc atgaagttga cgtagcgctt gaggatctcg gggtcgaact
     1021 cgatcgtctc gcggatcacc ttgcggtagc cggcgccgtt ctcgtcgcgg agcatgtgca
     1081 tgaacgcgct gttgtagacg cgatgcatcc ccagggttcg gacgaagtag ccctcgagca
     1141 gccagaacgc ctcggccagc aggagcgtgc ccgggatctc ggccgccacg cggtcgacga
     1201 cctcgcgcca gaactcgacc ggcatccggg catcgaactc ggccttcggg atggcgtgct
     1261 cggcgcgcga cgggatgccg ccaccggtgc ccggctcggg ccaccacagc cgctcgatgt
     1321 gcttcttggc gaggaccatc gccgcgtcga accggatgat cgggaaccgt cgggcgacct
     1381 ccaggatcgt caggatgacc tgctcccgga cttccgggtc gaggaagttg agctgcgcgg
     1441 tgtcgttcca cgggaagctc gtgccgtcgt tcccgtgata gacgtaacgg acgtcgccgc
     1501 tccagcggtc gaaccgcttg aacacgacgg ccgcgtcgct gtcgtcccag tagtggtcct
     1561 cgatccggat ttcgacccgc gggtccgtcg acaggttcgc gccctcgaac cggtaggccg
     1621 ggtagggcgg ctcgtcgagc ccgatgaacc gctcggggtg gtcgatgacc cagcgcgagt
     1681 cgagccccat gtggttcggg accatgtcgc tcgccaggcg gatcccgtgg cgccaggccc
     1741 tctcgcgaag ccggccaagc gcgtcctccc cgccgaggtc gtcggcgatc cggtagtcgt
     1801 cgagcgagta cgcgctggcg acggcgtcct ggttgccgcg ccagcgcttg atcgtctccg
     1861 aggcgacaga gcgctgccac agcccgatga gccacagccc ggtcatgccc caccgcgcga
     1921 gcgtgtccag ctcctcgtcc gggatcgcgt cgag
//
LOCUS       DATDDI010000576         3591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_262643, whole genome shotgun sequence.
ACCESSION   DATDDI010000576 DATDDI010000000
VERSION     DATDDI010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262643"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1088
                     /gene="moaA"
                     /locus_tag="VIU37_08270"
     CDS             <1..1088
                     /gene="moaA"
                     /locus_tag="VIU37_08270"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEY6013988.1"
                     /translation="PLADHRYAASVPRIPAVLRPPSGLLGDRLGRPLHDLRISVTDRC
                     NFRCSYCMPKEVFDKQYSFLPHASLLSFEEITRLARAFVGLGVEKLRITGGEPLVRRD
                     LPDLIAMLSALRSADGAELDLTLTTNGSALRALARPLADAGLRRVTVSLDSLDDAVFG
                     RMNGIDFPVAKVLDGIAAAQEAGLAPIKVNMVVRRGINETSVLPMAAWAREAGVILRF
                     IEYMDVGHSNGWRLDEVVPARELVEMLSSAWAIEPADPLYRGEVADRWRYADGGGEFG
                     VIASVTQPFCRDCTRARVSADGKVYTCLFAVEGHDARAILRSGATDTELATFVEGIWA
                     RRGDRYSELRSAATSRLPKVEMFAMGG"
     gene            1467..2360
                     /locus_tag="VIU37_08275"
     CDS             1467..2360
                     /locus_tag="VIU37_08275"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF006054.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEY6013989.1"
                     /translation="MPEVSESSGSLDPSRAIRPSDQPARLAALVAAVRAQTDLVPEVG
                     IVLGSGLGGLADQLDGPVSIPFGELPGWPPATAPGHAGRLLLGHLGGQPVVMLQGRFH
                     LYEGNDPGLVVQPVLLFRALGARVVVLTNAAGGLDPSFGPGTLMVMRDHINLTGRNPL
                     IGPNDGGLGERFPDLTEAWSPRLRERLHAAGKAEGVSLAEGVYVGLVGPNYETPAEVR
                     MLAALGGHAVGMSTVLECIAARWVGLEVCGVSLVTNPGAGYTGVPLTHEEVLAAGAEA
                     GPRLARVIRRFVADLSDLEPR"
     gene            complement(2353..3219)
                     /gene="thyX"
                     /locus_tag="VIU37_08280"
     CDS             complement(2353..3219)
                     /gene="thyX"
                     /locus_tag="VIU37_08280"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: protein motif:HMM:TIGR02170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0009265 - 2'-deoxyribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEY6013990.1"
                     /translation="MTVPSATPEPAREKTAIPKNPGRRDLGMRATLLFPNREIVERYY
                     VPLIYTACRTCYSEQDPDEIFRRALAGDFDPLKMQKLIGSVIESGHGSTIEHVVFTFA
                     ISGVSRTLSHQLVRHRAGVAFDQQSQRYVKFKGAATMLPHSIAEGDPELRERFEEQVD
                     GALGLYGEMLKAGVPGEDARFVFPNATRTNLVMTTNLRALIHMSGLRLCTMAQWEIRR
                     LFQLIRHEVFAVSPFLGSFLAPKCVPLGYCDEFNNRDGHCPIRPHKDNVLAAWAEKSA
                     AAKAAGRELPVT"
     gene            complement(3333..>3591)
                     /locus_tag="VIU37_08285"
     CDS             complement(3333..>3591)
                     /locus_tag="VIU37_08285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013991.1"
                     /translation="AAGRLDRAARLRGAARNLTAETGAGLATYVEDTFEEGVRPGVRS
                     HMAPDELERLGAEGAAMTLDEAVAYALEGSEPTVPHGGASD"
BASE COUNT          468 a         1263 c         1293 g          567 t
ORIGIN      
        1 ttccgctcgc cgatcaccgc tacgccgcgt cggtgccgcg catccccgcg gtgctgcgcc
       61 cgccctccgg cctgctcggc gaccgcctcg gccggccgct gcacgacctg cgcatctcgg
      121 tcactgaccg ctgcaacttc cgctgcagct actgcatgcc gaaggaggtc ttcgacaagc
      181 agtacagctt cctgccccac gcctcgctgc tcagcttcga ggagatcacg cggctggcgc
      241 gggcgttcgt cgggctcggc gtggagaagc tgcggatcac cggcggggag ccgctcgtcc
      301 gccgcgacct tccggacctg atcgcgatgc tctcggcgct gcgaagcgcc gacggggccg
      361 aactcgacct caccctgacg acgaacggct cggcgctgcg ggcgctcgcc cggccgctcg
      421 cggacgccgg gcttcggcga gtcaccgtca gcctcgactc cctggacgac gccgtattcg
      481 ggcgcatgaa cgggatcgac ttcccggtgg ccaaggtgct cgacgggatc gcggccgcgc
      541 aggaggccgg gctcgccccg atcaaggtca acatggtcgt gcgtcgcggg atcaacgaga
      601 cgagcgtgct gccgatggcg gcctgggcac gtgaagccgg cgtgatcctg cgcttcatcg
      661 agtacatgga cgtgggccat tcgaacggct ggcggctcga cgaggtggtg ccggcgcgcg
      721 agctggtgga gatgctctcg tccgcctggg cgatcgagcc ggcggacccc ctctatcgcg
      781 gcgaggtggc agatcggtgg cggtatgccg acggcggcgg cgagttcggg gtgatcgcgt
      841 cggtgacgca gccgttctgt cgcgattgca cccgcgcccg ggtctcggcc gacggcaagg
      901 tctacacttg cctgttcgcc gtcgagggtc acgacgcccg cgcgatcctg cgttccgggg
      961 ccaccgacac cgagctcgcg acctttgtcg aagggatctg ggctcgccgc ggcgaccgct
     1021 actcggagct gcgctcggcg gcgacgtccc ggctgcccaa ggtcgagatg ttcgcgatgg
     1081 gcggctgagc cgacccgtcg cggtcgcgcg ttgcggcctt gtccacaggc cgtccacagg
     1141 cgtcgacaag tggtggaagg gcccggaccg cgccgtcgcg agttggtgga taaccgcgtt
     1201 gaccgtccac gacgccggcc gttaccgtac gtctcagccc gaaggggccg acaggatcga
     1261 aggaaccgag atcgcatcaa ggacctccgc tccgccgccg gtcgcttcgg gcgcttcgtt
     1321 acccgcctgc gagggtcgtc tcaccgcggc cgtccagcgc ggtgcccgac gggacgtgat
     1381 cggcatcccg gtgtcgatac tcccgccggg ccgacgaagc catgcgaccc cgaccgtctg
     1441 gcgctggatg tgtggtggag gtccgcatgc ctgaggtttc cgagtcgtcc gggtcactgg
     1501 acccctcgcg ggcgatccgg ccgtccgatc agcctgcgcg gctggccgcg ctcgttgccg
     1561 ccgtgcgtgc gcagacggac ctcgttcccg aggtcggcat cgtcctcggg tccgggctcg
     1621 gcgggctggc ggatcagctc gacggcccgg tctcgatccc gttcggggag ctgcccggct
     1681 ggccgccggc taccgctccc ggtcatgccg ggcgtctcct cctgggccat ctcggcggcc
     1741 agccggtggt catgctccag ggccggttcc atctctacga gggcaatgac ccggggctcg
     1801 tcgtgcagcc cgtcctcctg ttccgggcgc tgggcgcccg cgtcgtcgtc ctgacgaacg
     1861 ccgccggcgg gctcgacccg agctttggcc cggggaccct catggtgatg cgcgaccaca
     1921 tcaacctgac cggtcggaac cccctgatcg gcccgaacga cggcgggctc ggcgagcgct
     1981 tcccggacct gaccgaggcc tggagcccga ggctccgcga gcggctccac gcggccggca
     2041 aggccgaggg cgtgtcgctc gcggagggcg tctacgtcgg gctggtcggg cccaactacg
     2101 agacgccggc cgaggtccgg atgctggccg cattaggcgg gcatgcggtc gggatgtcga
     2161 ccgtgctcga atgcatcgcc gcccggtggg tcgggctcga ggtgtgcggc gtctcgttgg
     2221 tcacgaaccc cggggccggc tacacgggcg tgccgctgac ccatgaggag gtcctggcgg
     2281 ccggggccga agcggggccg cggcttgccc gggtcatccg ccggttcgtg gcggacctct
     2341 cggacctcga acctaggtga ccggcagctc ccggcccgcc gccttcgcgg cggcgctctt
     2401 ctcggcccag gccgcgagga cgttgtcctt gtgcggccgg atcgggcaat gcccgtcgcg
     2461 gttgttgaac tcgtcgcagt agccgagcgg cacgcacttc ggggcgagga agctgccgag
     2521 gaacggcgag accgcgaaga cctcgtggcg gatcaactgg aagagccgcc ggatctccca
     2581 ctgggccatc gtgcacaggc gcaaccccga catgtgaatg agcgcccgca ggttcgtggt
     2641 catgaccagg ttcgtgcgcg tcgcgttcgg gaagacgaac cgggcgtcct cgccgggcac
     2701 cccggccttg agcatctcgc cgtacagccc gagcgcgccg tcgacctgct cctcgaaccg
     2761 ttcgcgcagc tcgggatcgc cctcggcgat cgagtggggg agcatcgtcg ccgcgccctt
     2821 gaacttcacg tagcgctggc tctgctggtc gaaggccacg cccgcccggt ggcggacgag
     2881 ctggtgcgac agcgtcctcg agacgccgct gatcgcgaag gtgaagacga cgtgctcgat
     2941 cgtcgagccg tgacccgact cgatcaccga gccgatcagc ttctgcatct tgagcgggtc
     3001 gaagtcgccg gccagcgctc gccggaagat ctcgtcgggg tcctgctccg agtagcacgt
     3061 ccggcaggcc gtgtagatca gtggaacgta gtagcgctcg acgatctctc ggttcgggaa
     3121 gagcagcgtg gcccgcatac cgaggtcgcg ccggccgggg ttcttcggga tcgcggtctt
     3181 ctcgcgggcg ggctcggggg tcgcggaggg gacggtcatc ggaacgccag tctagtcgag
     3241 caggcgccag ccggctggta acgattcggt ggcagccatc gcgcggactc gcgtcgtcag
     3301 ccctcgagcc cgaggatggc agccagatgc tcctagtccg aagcgccgcc gtgagggacg
     3361 gtcggctcgc ttccttcgag cgcatacgcc accgcctcgt cgagcgtcat cgccgcgccc
     3421 tcggcgccga gccgttcgag ttcgtccggg gccatgtgcg accggacgcc gggtcgcacg
     3481 ccctcctcga aggtgtcctc gacgtaggtg gcgagcccgg cccccgtctc cgcggtgagg
     3541 ttgcgagcgg ccccgcggag ccgggccgcc cggtccagcc gtccggcggc c
//
LOCUS       DATDDI010000577         2068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_75385, whole genome shotgun sequence.
ACCESSION   DATDDI010000577 DATDDI010000000
VERSION     DATDDI010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75385"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1459)
                     /locus_tag="VIU37_08290"
     CDS             complement(<1..1459)
                     /locus_tag="VIU37_08290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013992.1"
                     /translation="MSRDAPSLFLRNATGLVKGWSGFDAFTYSFMSVNLVTLGMFYSL
                     AIFAFVPDGSAVASIVISGVAVTFLAIAYAGLIAVMPRAGGDYIWQSRVLDGIPGIAS
                     GAVVGAVGGLVVGGATLGGDSGNIVGLVVGLVIGAAVGYLRGGIAFVLAATGWWFILA
                     QWAPIYGSIAKIEFFQPLAALVGWTDGVTFFTSQNGTFAVSLFVIVLTTVLVSLGMAG
                     YARIQRWSLWIGLIGLAVVFVLLLVSSQTSFQTAFDKAANDLFGVSNAYQGTIDNAAA
                     TDGYTGGSLDPFGFGGGTFLLIPFMMFWILYPNWGSTLYGEVRGAGDFRKVLNGMLGG
                     IWVTIALALIFVFLADKTFGWTFFNSTNVSYIDYAYGYTTTAPVIPIWGYPPLLASFL
                     VDSRIFQIAMVVVFGAWFLGWSGTLFLSSTRMIFAAAFDRVLPEAAARVSERRAVPWV
                     ALLFIMVPSVVVSAIYAYWTPFVSWTLDASLVIAVT"
     gene            complement(1537..>2068)
                     /locus_tag="VIU37_08295"
     CDS             complement(1537..>2068)
                     /locus_tag="VIU37_08295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013993.1"
                     /translation="NDDMFEIDAIIDRAERVALGEANAIDLEGMSLVSTGWANPTPWN
                     TYREMPEPELRARIDELVGKAPDPARAIFNFHAPPHGSNLDNAPKLDANMRYVAGGQA
                     LVPVGSRAVRDAILAYRPPLSLHGHIHEGRGAVKLGPTLAVNPGSAYEDGVLQAAIVD
                     LDTRKGMVKRYLLING"
BASE COUNT          387 a          688 c          714 g          279 t
ORIGIN      
        1 aggtgaccgc gatgacgagt gacgcatcca gcgtccacga cacgaacggc gtccagtacg
       61 cgtagatcgc gctcacgacg accgacggga ccatgatgaa caggagggcc acccacggca
      121 cggcgcgccg ttcggagacc cgtgccgcgg cctcgggaag cacccggtcg aacgcggccg
      181 cgaagatcat ccgcgtcgac gacaggaaca gggtccccga ccagccgagg aaccaggccc
      241 cgaagaccac gaccatcgcg atctggaaga tccggctgtc gaccaggaac gaggcgagca
      301 gcggcgggta gccccagatc gggatcaccg gcgccgtggt cgtgtagccg tacgcgtagt
      361 cgatgtagct gacgttcgtc gagttgaaga acgtccagcc gaacgtcttg tcggcgagga
      421 acacgaagat cagggccagg gcgatcgtga cccagatccc gccgagcatg ccgttgagga
      481 ccttgcggaa gtcgccggcg ccgcggacct cgccgtacag cgtcgagccc cagttcggat
      541 agaggatcca gaacatcatg aacgggatca gcaggaacgt gccgcccccg aacccgaacg
      601 gatccagcga tccgccggtg tagccatccg tcgccgccgc gttgtcgatc gtgccctggt
      661 aggcgttgct gacgccgaac aggtcgttgg cggccttgtc gaacgcggtc tggaacgacg
      721 tctgcgacga gacgagcagc aggacgaaga ccacggccag gccgatcagc ccgatccaca
      781 ggctccagcg ctggatccgg gcgtacccgg ccatcccgag cgagacgagg acggtggtca
      841 gcacgatgac gaacagcgag acggcgaacg tcccgttctg cgacgtgaag aacgtgacgc
      901 cgtcggtcca gccgacgagc gccgccaatg gctggaagaa ctcgatcttc gcgatcgagc
      961 cgtagatcgg cgcccattgg gcgaggatga accaccagcc cgtggccgcc agcacgaacg
     1021 cgatcccgcc gcggaggtac ccgaccgcgg cgccgatcac gagcccgacc accaggccga
     1081 cgatgttgcc cgagtcaccg cccagcgtcg ccccgccgac gaccaggccg ccgaccgcgc
     1141 cgacgacggc gccggaggcg atgccgggga tcccgtcgag cacgcggctc tgccagatgt
     1201 agtcgccgcc ggcccgcggc atgaccgcga tcagtccggc gtaggcgatc gccaggaacg
     1261 tgacggcgac cccggagatg acgatggagg cgacggccga gccgtccggg acgaatgcga
     1321 agatcgccag gctgtagaac atcccgaggg tgacgaggtt caccgacatg aacgagtagg
     1381 tgaacgcgtc gaacccggac caacccttga cgagtcccgt cgcgttcctg aggaacagtg
     1441 acggcgcgtc gcggctcacc gaagccatgg gacgaactcc tcctctctac gaatgcccag
     1501 cccggtgcgc gggctggacg tccaggcgcc gggcggtcaa ccgttgatca gcagatagcg
     1561 cttcaccatt cccttccgcg tgtccaggtc gacgatcgcg gcctggagca cgccgtcctc
     1621 gtaggcgctg ccggggttga ccgccagggt gggcccgagc ttgacggctc cccggccttc
     1681 gtgaatgtgg ccatggagcg agagcggcgg gcggtacgcg aggatggcgt cgcgaacggc
     1741 ccgcgaaccg accgggacga gcgcctggcc gccggcgacg tacctcatgt tggcatcgag
     1801 tttcggcgcg ttgtcaaggt tggaaccatg cggcggtgcg tggaagttga agatcgcgcg
     1861 agcggggtcg ggggccttgc cgacgagctc gtcgatgcgc gcccggagct cgggttccgg
     1921 catctcgcgg tacgtgttcc agggcgtcgg gttcgcccag ccggtcgaca ccagcgacat
     1981 cccctccagg tcgatcgcgt tggcctcgcc gagggcgacc cgctccgcgc ggtcgatgat
     2041 cgcgtcgatc tcgaacatgt cgtcgttg
//
LOCUS       DATDDI010000578         1574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_324675, whole genome shotgun sequence.
ACCESSION   DATDDI010000578 DATDDI010000000
VERSION     DATDDI010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324675"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..601)
                     /gene="rnc"
                     /locus_tag="VIU37_08300"
     CDS             complement(<1..601)
                     /gene="rnc"
                     /locus_tag="VIU37_08300"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEY6013994.1"
                     /translation="MRPAAAFAERLGITVRDLDLLEQALVHSSWHHEHRDGARGHNER
                     LEYLGDAVVNLAISEALYARHPGDDEGYLSARRAAIVSTVGLARLAGRIDLGAYLMLG
                     EGEAQRSGRRRPSLLASTFEAVAGALYLDLGFPRVRDWLVGLAGPELTAELPIGSLKS
                     PKSRLQEYTQRHSGERPSYRLLDATGPDHEKSFRIEVWVD"
     gene            complement(639..875)
                     /gene="acpP"
                     /locus_tag="VIU37_08305"
     CDS             complement(639..875)
                     /gene="acpP"
                     /locus_tag="VIU37_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEY6013995.1"
                     /translation="MATTYERLKKIVVEQLGADEDEVKPEASFVDDLNADSLDLVELI
                     MSLEEEFGTEISDEDAEKIRTVQDAVDYIDERAS"
     gene            complement(1325..>1574)
                     /locus_tag="VIU37_08310"
     CDS             complement(1325..>1574)
                     /locus_tag="VIU37_08310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6013996.1"
                     /translation="EVPGVARLGRGGPRWRRALGGPAVSVQFRNDRVLVRAWIVARPG
                     QALGPLAGQVRAAVTATVERLLGLELGAVTVLVDGVGG"
BASE COUNT          215 a          584 c          549 g          226 t
ORIGIN      
        1 cgtcgaccca gacctcgatc cggaacgact tctcgtggtc gggcccggtc gcgtcgagca
       61 accggtacga cggccgctcg cccgagtgac gctgggtgta ctcctggagc cggctcttgg
      121 gactcttgag cgagccgatc ggcagctcgg cggtgagctc cggcccggcc aggccgacca
      181 gccagtcccg gacccgcggg aacccgaggt ccaggtagag ggcaccggcg acggcctcga
      241 acgtggaggc caggagcgac gggcggcggc gcccgctccg ctgggcctcg ccttcaccga
      301 gcatcaggta cgccccgaga tcgatccgac cggccagccg ggcgagcccg acggtcgaca
      361 cgatggccgc gcggcgggcg ctcaggtacc cctcgtcgtc gcccgggtgc cgggcgtaga
      421 gcgcctccga gatggccagg ttgacgaccg cgtcaccgag atactcgagg cgctcgttgt
      481 ggccgcgtgc gccgtcccga tgctcgtggt gccagctcga atggacgagc gcctgctcca
      541 gcaggtcgag gtcgcggacg gtgatgccga gtcgttccgc gaaggctgct gcgggtcgca
      601 tctggcccgc actccggccg cgacccggcc gggagccgct aggacgcccg ctcgtcgatg
      661 taatcgacgg catcctggac ggtgcggatc ttctccgcat cctcgtccga gatctccgtc
      721 ccgaactcct cttcgaggct catgatgagc tcgacgagat cgagcgagtc ggcgttcagg
      781 tcatcgacga aggacgcctc gggcttgacc tcatcctcgt cggcgccgag ctgctcgacg
      841 acgatcttct tgaggcgttc gtaggtggtt gccactgact ccctcctcgg agtttggtgc
      901 tgatgccgtc tgacgggggc cgctgggctc cgctgcgatg ttcccgagga cgccgttcat
      961 gaggcgtcgc atcgggtctc cactgtaggt gcgtgccagc tcgacccact cggcgatggc
     1021 cacccgggcc ggcgtcgccg agtgtagcac ctcggatatg gcggtacgga gcagcgcgcg
     1081 gtccattcgg gccagtccgg tgaccgggta ttgcggggcg cggcgcgtga tctcggcgtc
     1141 gatcgcgtcg cggtgcgcca tctccgccgc caccagctcg cgggccagct cggccgcgcc
     1201 ggcgtcacgg gtctcggcct ccaggtgacg ctccaggacc gcgtccgcag tgcgctggcc
     1261 gaagtccgcc tcgaagatcg ccgccagcgc gagccggcga cccgtccgtc ggccgcggac
     1321 ccggtcagcc cccgacgcca tcgaccagga ccgtgaccgc cccgagctcc aggccgagga
     1381 gccgctcgac ggtcgccgtc acggccgccc ggacctggcc ggccagcggc ccgagcgcct
     1441 ggccgggacg cgccacgatc caggcacgga ccagcacccg atcgttgcga aactgcacgg
     1501 aaaccgccgg cccacccagc gctcgccgcc agcgcggacc cccccgcccg agccgcgcga
     1561 ccccgggcac ctcg
//
LOCUS       DATDDI010000579         2898 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_554016, whole genome shotgun sequence.
ACCESSION   DATDDI010000579 DATDDI010000000
VERSION     DATDDI010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554016"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VIU37_08315"
     CDS             complement(<1..767)
                     /locus_tag="VIU37_08315"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEY6013997.1"
                     /translation="MPELPDLTVVADALHAALAGRDVASAQAPGPLAVRGTPAELQAL
                     VGQRVDSVRRRGKFLLLALERDAVACNPMLTGRFQLAGPGDKLPSKTAVVLGFGTRRS
                     GPADAAAWTKGAGWMPADDATVEVRYRDPTQMGKIYLQPAGVARLVPGLGEPDQGPDA
                     DDPALTLEAWRERIRRHPGELKNLLRNQAFVAGIGNAYSDEILHAARLLPFRKRSSLA
                     GEEVDALYDATRATLANAIEVLKARVPPTFEKQVRDFL"
     gene            987..>2898
                     /gene="rpsA"
                     /locus_tag="VIU37_08320"
     CDS             987..>2898
                     /gene="rpsA"
                     /locus_tag="VIU37_08320"
                     /inference="COORDINATES: protein motif:HMM:NF005208.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEY6013998.1"
                     /translation="MTDEELSGTTPETGAIATADQASEDTVAAAAADEPAANQDGSAT
                     IPAAETDPQPVTAEAAPAPAASAPEAAPDAEPVAAAPEESAPEAVSEPAGEAATAESV
                     AAPATEDTAAAAEPATAALSADDTADAPAASDDEEPPVAAARALGPEPTTMEELLAEQ
                     DSDIKSFKHGDVVEGQVVRIDKDEILVDIGAKSEGVVSNRELFGRHGEGQPALNIGDT
                     VLVYVLQPESPEGHVVLSLRRAGLERKWRAMQEQFEAGLIIEAPVIDHNKGGLIVDCG
                     IRGFVPISQIVDFPRRPQNDQPRDAAQEIAEKLMPFVGRKLRLKILEVNRKANRLILS
                     EKVALYEERREKRDELFSSLQVGQKVTGTVRSIAPFGVFIDLGGIDGLVHKSELSWNK
                     VNNPEAGYRVGEEVEAEVIDINHERGRISLSIRRLQPDPWHSTVADFNVGDIIDGTVT
                     KLVNFGAFVRVRDGLEGLIHISELSHQRVAHPGDVVHEGQQLKLKIISLDSERHRLGL
                     SLKQAEEPPARPAPEPAAPSSHAGPPSGGPRPERRPRPERSYSMSDAVQEPEGGIDNT
                     LASAFAQVRQQLAAAEVEEVKEELAAAEAAEEAEASEAIEAVVEGVVATETAQEAEAA
                     AEVEQLADAAAAS"
BASE COUNT          484 a         1033 c         1002 g          379 t
ORIGIN      
        1 aggaagtcgc gaacctgctt ctcgaacgtc ggcggcacgc gggccttgag gacctcgatc
       61 gcgttcgcca gggtggctcg ggtggcgtcg tacagcgcat ccacctcttc gcctgccagg
      121 ctggaacgct tccggaacgg caggagccgg gccgcatgga ggatctcgtc gctgtaagcg
      181 ttgccgattc cggcgacgaa cgcctggttc cggaggaggt tcttgagctc gcccgggtgc
      241 cgccggatcc gttcgcgcca ggcctcgagg gtgagcgccg gatcgtccgc gtcgggaccc
      301 tggtcgggct cgccgagccc cggaaccagc ctcgcgaccc cggccggctg gaggtagatc
      361 ttgcccatct gggtcgggtc gcgatagcgc acttcgaccg tggcatcgtc cgccggcatc
      421 cagccggcgc ccttcgtcca tgccgcggcg tcggccggcc cggatcgcct ggtcccgaag
      481 cccagcacga ccgcagtctt cgacgggagc ttgtcgcccg gccccgcgag ctggaatcgg
      541 ccggtcagca ttgggttgca cgcgacggcg tcgcgttcca gcgcaaggag caggaacttg
      601 ccgcggcgcc ggacgctgtc gacccgctgg ccgacgagcg cctggagttc cgccggggtc
      661 ccacgcacgg cgaggggtcc cggtgcctgg gcggaggcga cgtcgcgacc agccagcgcg
      721 gcgtgcagcg catcggcgac cacggtcaga tcgggcaatt cgggcacggt tgcgcgattg
      781 tagtggccaa gaaccgtgtg ctagactctc ccggccccga gaggcaggac agctgaagag
      841 ctacgagcag gctattcgac gcacgaagga gcggaccgcg gagtcgatca ccacggacca
      901 cttgatcgta tcggacacgg cttgagcgtt gctcaagccg ttcgtgattc ccgggagcaa
      961 atccaccacc aggagtgacc aaaccgttga ccgatgaaga gctgagcggg acaacgccgg
     1021 agacgggcgc gattgcgacc gccgatcagg cgtccgagga caccgtcgcg gctgctgccg
     1081 ccgacgagcc cgctgcgaac caggacggat ccgccaccat cccagccgcg gagaccgatc
     1141 cacaacccgt gaccgccgag gccgctccgg ctccggctgc gtccgccccg gaggccgccc
     1201 ccgacgccga gcccgttgcc gccgcgccgg aggaatctgc cccggaagcc gtctccgagc
     1261 ctgccggaga ggccgcaacg gccgagtccg tcgccgctcc cgccaccgag gacaccgcgg
     1321 ccgcggccga gcccgccacc gccgcgctgt ccgccgacga caccgccgat gcgcctgccg
     1381 ccagcgacga tgaggagccg cccgtggcgg ccgctcgcgc gctcggcccc gagccgacca
     1441 ccatggagga gctcctcgcc gagcaggact cggacatcaa gagcttcaag cacggcgatg
     1501 tcgtcgaggg ccaggtcgtc cgcatcgaca aggacgagat cctggtcgac atcggggcga
     1561 agagcgaggg cgtggtcagc aaccgcgagc tgttcggacg ccacggcgag ggccagccgg
     1621 cgctcaacat cggcgacacg gtcctggtct acgtcctcca gcccgagtcc ccggagggac
     1681 acgtcgtact gtcgctgcgc cgggccgggc tcgagcgcaa gtggcgtgcg atgcaggagc
     1741 agttcgaggc cgggctgatc atcgaggcgc cggtcatcga ccacaacaag ggtggcctca
     1801 tcgtcgactg cggcatccgc ggcttcgtcc cgatcagcca gatcgtcgac ttcccgcgcc
     1861 gccctcagaa cgaccagccg cgcgacgcgg cgcaggagat cgccgagaag ctgatgccgt
     1921 tcgtcggccg caagcttcgg ctcaagatcc tcgaggtcaa ccgcaaggcc aaccgcctca
     1981 tcctgtcgga gaaggtggcc ctctacgagg agcgccgcga gaagcgcgac gagctgttca
     2041 gcagcctgca ggtcggccag aaggtcaccg gcaccgttcg ctccatcgcg ccgttcgggg
     2101 tgttcatcga cctcggcggc atcgatgggc tcgtccacaa gagcgagctg tcgtggaaca
     2161 aggtcaacaa ccccgaggcc ggctatcgcg tcggcgagga ggtcgaggcc gaggtcatcg
     2221 acatcaacca cgagcgtggc cggatcagcc tgtcgatccg ccgcctgcag ccggacccgt
     2281 ggcactccac ggtggccgac ttcaacgtcg gcgacatcat cgacggcacc gtgaccaagc
     2341 tcgtcaactt cggggccttc gtgcgcgtcc gcgacgggct cgagggcctg atccacatca
     2401 gcgagctgtc ccatcagcgc gtcgcgcatc cgggcgacgt cgtccacgag ggtcagcagc
     2461 tcaagctcaa gatcatctcg ctcgactccg agcgacaccg cctgggtctc agcctcaagc
     2521 aggccgagga gcccccggct cgcccggcac cggagccggc tgcaccgtcc agccacgcgg
     2581 ggccgccctc gggtggcccg cgcccggagc gccgcccgcg ccccgagcgc agctattcga
     2641 tgtcggacgc ggtccaggag ccggagggcg gcatcgacaa cactctggcc tccgccttcg
     2701 cgcaggtccg ccagcaactg gcggcagccg aagtcgaaga ggtcaaggag gaactcgccg
     2761 cggcggaagc ggccgaggag gccgaggcgt cggaggcgat cgaagcggtc gtcgagggcg
     2821 tggtcgccac ggagaccgcc caggaagccg aagctgccgc cgaggtcgaa cagctcgccg
     2881 acgcggcggc tgccagcg
//
LOCUS       DATDDI010000580         4936 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_262775, whole genome shotgun sequence.
ACCESSION   DATDDI010000580 DATDDI010000000
VERSION     DATDDI010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4936
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262775"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VIU37_08325"
     CDS             <1..424
                     /locus_tag="VIU37_08325"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6013999.1"
                     /translation="AQRRAPSPLEAALERVGDRWSLLLVEALLDGPRRFNALAEALPS
                     IAPNILADRLRRLERERILVATPYQQRPPRMSYALAAEGRELASALRLLADWGARRSD
                     TAEPFHHDACGTSLETRWWCPTCAVALDDAEASETRTV"
     gene            452..898
                     /locus_tag="VIU37_08330"
     CDS             452..898
                     /locus_tag="VIU37_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014000.1"
                     /translation="MDDERWEPGMPVLDRQAAPGPDLPRGGTSRLPPSLQGLPPRSVP
                     EAAPTPLQAHYINLSVIVLICGAVAISALELGASLGSPLVKLCVALAAPLLVLTTGDA
                     VLRIWRSAWAWMPIDRGRGLFRLAWVAVSLIGLGALIAASIAVLLA"
     gene            918..1532
                     /locus_tag="VIU37_08335"
     CDS             918..1532
                     /locus_tag="VIU37_08335"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY6014001.1"
                     /translation="MTEAFDRGRDGRSTDVPSGAGVPAWIAQHLNFCSSCGGPLRFGV
                     VAGEDRERLACAVCGQVAYVNPRLVVTTLPITDAGEIVLIRRGIEPGLGSWAQPGGFL
                     EIDETVNQAAIRETFEETGLLVEPGEIVGLYTRLEAVVVTIAFEARIVGGKATRTPEA
                     TEVVAFAPDAIPWREIAFKTTIWALRDWIDLRHPELRPGEGGWL"
     gene            1725..2429
                     /locus_tag="VIU37_08340"
     CDS             1725..2429
                     /locus_tag="VIU37_08340"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6014002.1"
                     /translation="MRIRCAANRQISPARDHGTVPTRQGPIARAARIANEDQTRVLGE
                     ISRARRTAGLSNAEVGRACRMSRSMVARIQAGSRRATVVELAAIAAAVGLDVRLHAYL
                     AGDPIRDAGQLRVLNRFRAQLHVSVDARTEVPLPIEGNRRAWDAVAAGRGWRAAVEVE
                     TVLDDIQALERRLALKARDGGMELVILVVADTPRNRRVLAAVPTALNWLRRDARGTLR
                     AFRRAEPPPTSALVLL"
     gene            complement(2540..4018)
                     /locus_tag="VIU37_08345"
     CDS             complement(2540..4018)
                     /locus_tag="VIU37_08345"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6014003.1"
                     /translation="MTTPTAESSAPTAARMIIGGEAVEAADGQTFEVVNPATGKVIAT
                     APLGGPADVDRAVAAAQRAYEDRKGWATWAAGKRGRALAKLAALIKDHTDELAGLESR
                     NVGKPISGARGEVTGAGLVFDYYAGAANKIFGQTIPVSKPGLDLTLREPIGVVGLIVP
                     WNFPLLMASWKVAPALAAGNTAILKPASYSPLTAIRLAELALEAGIPAGVLNVVTGPG
                     GSAGAAIAGHPGVGKVAFTGETTTGQEIMRLASGNVKKVSLELGGKSPNIVFADADLE
                     KFARESPYSVFDNTGQDCCARSRILVERSAHERVVELFAEATRKVIVGDPADKATEVG
                     TMVSFKQRDRVKDYIEIGLAEGATLVVGGGEPQDPALADGAYLMPTVFDGVSNDMRIA
                     REEIFGPVVSIIAFDTEEEALRLANATPYGLSGSIWSRDIGKALRTARGLQSGVISVN
                     SNSSVHTEAPFGGYKMSGIGRELGMSALDLYTEVKNVFIDLS"
     gene            4142..>4936
                     /locus_tag="VIU37_08350"
     CDS             4142..>4936
                     /locus_tag="VIU37_08350"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEY6014004.1"
                     /translation="MRLGALAQFGGSHVRLWIAAVALVVAIGSIGYLVLGWPLGDAIY
                     MTGITLTTVGYREVRELDGVGRAWTILVAIAGVGIIFGSVGIVAEAVLSEAASGRREA
                     KRMTQSVAALRGHLILCGYGRVGSTVARELAHAGERFVVVDINPASLVTAEHDGHLVV
                     VGDATSDAVLGAAGIDRARGLITTIDSDANNVYVTLSARALNPALFIVARANETGSEA
                     KLLHAGADRVVSPYSRAGRQIAELAVRPRVADFIDFALSHGELAFSI"
BASE COUNT          641 a         1794 c         1762 g          739 t
ORIGIN      
        1 agcgcagcgg cgcgcgccct cgccgctcga ggccgcgctc gagcgcgtcg gcgatcgctg
       61 gagcctgctc ctcgtggagg cactgctcga cggtccgcgc cgcttcaacg cgctggcaga
      121 ggcactcccg tccatcgcgc cgaacatcct cgccgaccgg ctccggcgcc tcgagcgcga
      181 gcggatcctc gtggcgaccc cataccagca gcgcccgccc cgaatgtcct acgcgctggc
      241 ggccgagggg cgggaactcg cgtcggcgct ccggctgctg gccgactggg gggcgcggcg
      301 ctccgacacg gccgagccgt tccaccacga tgcctgcggg acgtcgctcg agacgcgctg
      361 gtggtgcccg acctgcgcgg tggccctcga cgacgcggag gcgtcggaga ctcgaacggt
      421 ctgatccggg tcgttcgcta cactcgggcc gatggacgac gaacgctggg aacccgggat
      481 gccggttctc gaccgccagg cggccccggg gccggacttg ccccgcgggg gcacgtcccg
      541 gttgccgccg agcctccagg gcctcccgcc tcgatccgtc cccgaggcgg cgccgacgcc
      601 gctccaggcg cactacatca acctcagcgt gatcgtgctc atctgcggcg ccgtggcgat
      661 cagcgcgctc gagctcgggg cgtcgctcgg gagcccgctg gtcaagctgt gcgtcgcgct
      721 ggccgccccg ctgctcgtgc tcaccacggg cgacgccgtg ctccggatct ggcggtcggc
      781 ctgggcctgg atgccgatcg accgcggacg cggcctgttc cggctggcct gggtcgccgt
      841 cagcctgatc gggctcggcg cgctgatcgc ggcgtcgatc gcggtcctgc tcgcgtgacg
      901 gctccggcgg cacgcccgtg accgaggcgt tcgatcgggg ccgcgacggc cggtccaccg
      961 acgtgccgtc cggcgccggc gtgccggcgt ggatcgctca gcacctcaac ttctgctcga
     1021 gctgcggcgg gccgctccgg ttcggcgtcg tcgccggcga ggaccgcgag cggctggcgt
     1081 gcgccgtgtg tggccaggtg gcctacgtca acccgcgcct cgtggtcacc acgctgccga
     1141 tcaccgacgc cggcgagatc gtcctgatcc ggcggggcat cgagcccggc ctcggctcgt
     1201 gggcccagcc cggtggcttc ctcgagatcg acgagacggt caaccaggcg gcgatccggg
     1261 agacgttcga ggagaccggg ctgctcgtgg agcccggcga gatcgtcggc ctgtacaccc
     1321 ggctcgaggc ggtcgtggtg acgatcgcgt tcgaggcgcg catcgtcggc ggcaaggcga
     1381 ctcgcacgcc cgaggcgacc gaggtggtcg cgttcgcgcc ggacgccatc ccgtggcgcg
     1441 agatcgcctt caagaccacc atctgggcgc tgcgcgactg gatcgacctc cgccatcccg
     1501 agctgcgacc cggcgagggt ggctggctct agcggtccgt tcgggcgggc gggcggtggg
     1561 cggccggggg cgcgggcgcg ggcccgcacg tccgaaccca ggctgcgcac caggtgagca
     1621 ctgtgtcgct cgtccgtcac gccggcccac gtcttgggca ccagccgcgc atctcgtcgc
     1681 ctaagggccg gcagagcgtg gcctgacggc cgccgggcga cgcaatgcgc atcagatgcg
     1741 cagcaaaccg gcagataagc ccggccaggg atcatggcac cgtgccaacc cgacaagggc
     1801 ccatcgctcg agccgcgcgg attgcgaacg aggaccagac cagagtcctg ggcgagatct
     1861 cgcgtgcgcg tcgaaccgcc gggctcagca acgccgaggt cggccgcgcg tgccgcatgt
     1921 cgcgatcgat ggtcgctcgg atccaggcag gctccagacg ggccacggtg gtcgagctgg
     1981 ccgccatcgc agcggccgtc ggcctggatg tgcggctcca cgcctatctc gcaggcgacc
     2041 cgatccgcga cgcgggccag ctccgcgtcc tcaaccgctt ccgtgcgcaa ctccacgtct
     2101 cggtcgatgc tcggaccgag gtcccccttc cgatcgaagg gaatcgtcgg gcctgggatg
     2161 ccgtcgccgc cggccgtggc tggcgcgcag ccgtggaggt cgagaccgtg ctcgatgaca
     2221 tccaggcgct ggaacgccgg ctcgcgctca aggcgcgtga cggcggcatg gagctcgtga
     2281 tcctggtcgt cgccgacacg ccgcgaaaca ggcgcgtgct cgccgccgtg ccgaccgccc
     2341 tcaactggct gcgccgggac gctcgaggga cgctccgcgc ctttcgacgg gcggagccgc
     2401 caccgacgag cgcactggtg ctgttatgag gccgctgccc gatgcggacc cggcgacggc
     2461 ggttggctcc agcggatcgt ccggcgcggg ccgtcgggcc gtcgggccgt cgggcctagc
     2521 cggcggccaa accccgtcct cagctcaggt cgatgaagac gttcttgacc tcggtgtaca
     2581 ggtcgagcgc ggacatcccg agctcccggc cgatccccga catcttgtag ccgccgaacg
     2641 gggcctccgt gtgcacggag ctgttcgagt tgacgctgat cacgccggac tggaggcccc
     2701 tcgccgtgcg cagcgccttg ccgatgtcgc ggctccagat cgagccggac agcccgtacg
     2761 gggtcgcgtt ggccagccgg agcgcctcct cctcggtgtc gaacgcgatg atcgacacga
     2821 ccgggccgaa gatctcctct cgcgcgatcc gcatgtcgtt cgagacgccg tcgaagaccg
     2881 tcggcatcag gtaggcgccg tcggccagcg ccgggtcctg tggctccccg ccaccgacga
     2941 ccagcgtcgc gccctcggcc agcccgatct cgatgtagtc cttgacccgg tcacgctgct
     3001 tgaagctgac catggtcccg acctcggtgg ccttgtccgc cggatcgccg acgatcacct
     3061 tgcgggtggc ctcggcgaac agctccacga cccgctcatg ggccgatcgc tccaccagga
     3121 tccggctccg cgcgcagcag tcctgtcccg tgttgtcgaa gacggaatac ggcgactcgc
     3181 gggcgaactt ctccaggtcc gcgtcggcga acacgatgtt cgggctcttg ccgccgagct
     3241 cgagcgagac cttcttcacg ttgcccgacg ccagccgcat gatctcctgg cccgtggtcg
     3301 tctccccggt gaacgccacc ttgccgacac ccgggtgccc ggcgatcgcg gcgccggccg
     3361 atccgcccgg acccgtcacg acgttgagga cgccggccgg gatcccggcc tccagcgcca
     3421 gctcggccag gcggatggcc gtcagcggcg agtagctcgc cggcttgagg atcgccgtgt
     3481 tgccggccgc gagcgccgga gcgaccttcc acgaggccat caacagcggg aagttccacg
     3541 gcacgatcag cccgaccacc ccgatcggct cgcgcagggt gaggtcgagg cccggcttgg
     3601 agaccgggat cgtctggccg aagatcttgt tggctgcgcc ggcgtagtag tcgaacacga
     3661 ggcccgcgcc ggtgacctcg ccacgcgccc cggagatcgg cttgcccacg ttgcggctct
     3721 cgaggccggc cagctcgtcg gtgtggtcct tgatcagcgc cgccagcttg gcgagggccc
     3781 gtccgcgctt gcccgcggcc caggtggccc agcccttgcg atcctcatag gcacgctgcg
     3841 ccgccgccac ggctcggtcg acatcggccg gtccacccaa cggggcggtg gcgatgacct
     3901 tgccggtcgc cgggttgacg acctcgaacg tctggccgtc ggcggcctcg acggcctcgc
     3961 cgccgatgat catgcgggcg gccgtggggg cggaggactc ggcggtcggg gtcgtcatct
     4021 cgaggccttt cggatgcgtc ggcagactgg cggatcggtg cggggatgat acgacgcgac
     4081 ccccggacga acagtccgaa cggccctcag tcgcggccgg ggccgctggt agcatcgggc
     4141 catgcggctc ggcgccctcg cccagttcgg cggatcgcac gtccggctgt ggatcgccgc
     4201 ggtggccctg gtggtcgcga tcggcagcat cgggtacctc gtgctcggct ggccgctcgg
     4261 ggacgccatc tacatgaccg ggatcacgct gacgacggtc ggctatcgcg aggttcgcga
     4321 gctcgacggg gtcggccggg catggacgat cctggtcgcc atcgccggcg tcgggatcat
     4381 cttcggatcg gtcgggatcg tggccgaggc ggtcctgtcc gaggcggcga gtggacgaag
     4441 ggaggcgaag cggatgactc agtcggtggc cgcgctgcgc gggcacctga tcctgtgtgg
     4501 ctacgggcgc gtcggctcga ccgtcgcccg cgagcttgcc cacgccggcg agcggttcgt
     4561 cgtggtcgac atcaacccgg cctcactggt caccgccgag cacgatggtc atctcgtcgt
     4621 ggtcggcgac gccaccagcg acgcggtcct tggcgcggcg gggatcgacc gggcacgcgg
     4681 cctgatcacg acgatcgact ccgacgcgaa caacgtctac gtgacgctgt cggcgcgcgc
     4741 cctcaatcct gcgctgttca tcgtcgcgcg cgccaacgag accggctcgg aggccaagct
     4801 gcttcacgcc ggcgccgatc gggtcgtctc accgtattcg cgcgccggcc ggcagatcgc
     4861 cgagctcgcg gtccgcccgc gggtcgccga cttcatcgat ttcgcgctgt cacacggcga
     4921 gctcgccttc tcgatc
//
LOCUS       DATDDI010000581         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_262791, whole genome shotgun sequence.
ACCESSION   DATDDI010000581 DATDDI010000000
VERSION     DATDDI010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262791"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..641
                     /locus_tag="VIU37_08355"
     CDS             <1..641
                     /locus_tag="VIU37_08355"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014005.1"
                     /translation="TAPDTTISVPFSTAQQLLHADLPPIVRGQVGAGELVSQFIVYPT
                     PGTDVETVAHEIEANVDHAKAMTGAEFDRTVGASIAVFNAIVLGIGLISLIVGGLSIV
                     NTMAMSVAERTREIGIRRAIGAGRRRIVREVVTEAGLIGLIGGLCGLVLGTIIVTLAN
                     EAGRSSGTILFDLTPATSAFAVGFATILGMAAGLVPAWTAARLDPVEALRHE"
     gene            701..1417
                     /locus_tag="VIU37_08360"
     CDS             701..1417
                     /locus_tag="VIU37_08360"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014006.1"
                     /translation="MPLIEAHNLRKSYKLSKTNRVEALRGVDIQVEPGEMVAIMGPSG
                     SGKSTLMHLLGLLHLPDANGGPTPEIRFSGRDLGHASDAERTRARAGEMGFVFQSFNL
                     VPVLTALENVALAAEYAGVSSRRARQAAAEALALVGLSARADHLPSELSGGEQQRVAI
                     ARALVNHPAVVFADEPTGNLDSARTAEVLGLLRDLNRTRGQTFVIVTHDPEVGAACDR
                     IIRMRDGRVTGEERKLAAVA"
BASE COUNT          244 a          580 c          509 g          234 t
ORIGIN      
        1 tgaccgcccc ggatacgacg atcagcgtcc cgttctccac cgcacagcaa ctcctccacg
       61 ccgacctgcc gccgatcgtc cgcggccagg tcggggccgg cgagctggtc agccagttca
      121 tcgtctatcc gacgccgggc accgacgtcg agactgtcgc ccacgagatc gaagcgaacg
      181 tcgatcacgc caaggccatg accggcgccg agttcgaccg gaccgtcggg gcgtccatcg
      241 cggtgttcaa cgcgatcgtg ctcggcatcg ggctgatcag cctcatcgtc ggtgggctgt
      301 cgatcgtcaa caccatggcg atgtccgtcg ccgagcggac ccgcgagatc gggatccggc
      361 gcgccatcgg ggcgggccgc cggcgaatcg tccgcgaggt ggtcaccgag gccggcctga
      421 tcggcctcat cggcggcctc tgcggactcg tcctgggcac catcatcgtc accctcgcca
      481 acgaggccgg tcgctcgagc ggcacgatcc tcttcgatct cacccccgcc acgtctgcct
      541 ttgccgtcgg tttcgccacg atcctcggga tggcggcagg cctggtcccc gcgtggaccg
      601 cggcccggct cgaccccgtc gaggcactgc gtcacgaatg aacacgaccg ccgccgcacc
      661 accccctgaa tccacccgct tcagttcgga gacgaacacc atgccgctca tcgaggcgca
      721 caacctgcgc aagtcctaca agctctcgaa gaccaaccgg gtcgaggccc tgcggggcgt
      781 ggacatccag gtcgagccag gcgagatggt cgcgatcatg ggcccgtccg ggtccggcaa
      841 gtcgacactc atgcacctcc tcggcctgct gcacctgccc gacgccaacg gaggcccgac
      901 ccccgagatc cggttttccg gccgcgacct cggccatgcc tcggacgcgg aacgaacccg
      961 cgcccgggcc ggggagatgg ggttcgtctt ccaatcgttc aacctcgtgc cggtgctgac
     1021 cgcgctcgag aacgtcgcgc tcgcggcgga atacgccgga gtttccagcc gccgcgcccg
     1081 ccaggccgct gccgaggccc tggcgctggt cggcctgagc gcgcgggcgg accatctgcc
     1141 gtcggagctg tcggggggcg agcagcaacg cgttgcgatc gcgagggcgc tcgtgaacca
     1201 tccagccgtc gtgttcgccg acgagcccac cggcaacctg gattccgcac gcaccgccga
     1261 ggtcctgggc ctgctccgcg acctcaaccg cacccgcgga cagaccttcg tcatcgtgac
     1321 ccacgacccc gaagtgggtg cggcctgcga ccggatcatc cggatgcgcg acggccgcgt
     1381 gaccggcgaa gagcgcaagc tggcagcggt cgcctgagcc cctgagaccc ggattgggtc
     1441 gagctcggtt cagccgccgg ctgccagagg caggcccctc gccgaggtcc tgtttacagc
     1501 gagtttacgg cgaggtcgac cgagatcgag cctggtgaca tgaaccgggg tcctggtgcg
     1561 ctacttg
//
LOCUS       DATDDI010000582         1618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_408317, whole genome shotgun sequence.
ACCESSION   DATDDI010000582 DATDDI010000000
VERSION     DATDDI010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408317"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VIU37_08365"
     CDS             complement(<1..266)
                     /locus_tag="VIU37_08365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014007.1"
                     /translation="MKKLAVILLLAACGSGGNASRDALIAAWKTGGLAPSAFTAVKDS
                     PVGKDCQAGTVNSVDVMVCSYASADEAKKAQDLGLQWVGDTTGVS"
     gene            complement(263..1093)
                     /locus_tag="VIU37_08370"
     CDS             complement(263..1093)
                     /locus_tag="VIU37_08370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014008.1"
                     /translation="MRKTAILIVLASLTAGAAFADDGGNPHHYGRQVRFVGIHPIPRS
                     EGGGMCNIEGPHVHIYAANKLEYRDHEGNNYFVGDPVAYHYEGPKYAYKGPHPIHVEA
                     VVGGDPDVEYCYIEGPHFHYFRPTDDADYRVAGDTYFYVGTPPQAFVDARPMYVGINA
                     TYRPLVYTRPVVEVEPPNGWIGARAEFVTPGVVVETPGVIVEDHRHHGREAVVVGGGG
                     VVGVGAAVGVGVTVVAPPPPSISIGVGVGVGVGVGGGAVIHERGGHEHHDNGRHRGWR
                     "
     gene            complement(1132..1437)
                     /locus_tag="VIU37_08375"
     CDS             complement(1132..1437)
                     /locus_tag="VIU37_08375"
                     /inference="COORDINATES: protein motif:HMM:NF015147.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HEY6014009.1"
                     /translation="MLGVHDQAATQQQQVVFVQVTNPANHPLKLTKLDYTFAADGATV
                     STGEVPLERDVPAGAAVVVEVPLDSSSDKPMTLQGTLTTELDQVERTFPVQAQIAPH"
     gene            1423..>1618
                     /locus_tag="VIU37_08380"
     CDS             1423..>1618
                     /locus_tag="VIU37_08380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014010.1"
                     /translation="MNAEHAELRVTAGRLAGTEQETENEAEQKSERQAHDEPGRLFCC
                     FCASEQENASVRDAKEVATTG"
BASE COUNT          265 a          532 c          570 g          251 t
ORIGIN      
        1 gacacgccgg tggtgtcgcc gacccactgg aggccgaggt cttgcgcctt cttcgcctcg
       61 tcggcgctgg cgtagctgca caccatcacg tcgacgctgt tgaccgtgcc ggcctggcag
      121 tccttgccga cgggcgagtc cttgacggcg gtgaacgccg acggcgcgag gccgccggtc
      181 ttccacgccg cgatcaaggc atcgcgcgag gcgttgccac cgctgccgca ggcggcgagc
      241 aggaggatga cggcgagctt cttcaccgcc agcccctgtg ccggccgttg tcgtgatgct
      301 cgtggccacc gcgctcgtgg atcacggcgc cgccaccgac gccgacgcca acaccgacac
      361 cgacgccgat cgagatcgac ggcggaggcg gcgcgacgac ggtcacgccg acgccgaccg
      421 cggcgccgac cccgaccact ccaccaccgc cgaccacgac ggcctcgcga ccgtgatggc
      481 ggtgatcctc gacgatcacg cccggcgtct cgacgacgac gcccggggtc acgaactcgg
      541 cgcgcgcgcc gatccagccg ttcgggggtt cgacctcgac gaccgggcgc gtgtagacga
      601 gcgggcgata cgtcgcgttg atcccgacgt acatcggccg cgcgtcgacg aacgcctggg
      661 gcggcgtgcc gacgtagaag tacgtgtcgc cggcgacccg gtagtcggca tcgtcggtgg
      721 gccggaagta gtggaagtgc ggcccttcga tgtagcagta ctcgacatcg ggatcgccgc
      781 cgaccaccgc ctcgacgtgg atcgggtgcg ggcccttgta ggcgtacttc gggccttcgt
      841 agtgataagc gaccggatcg ccgacgaagt agttgttgcc ctcgtggtcg cggtactcga
      901 gcttgttcgc cgcgtagatg tgcacgtgcg ggccttcgat gttgcacatg ccgccgccct
      961 cggacctcgg gatgggatgg atcccgacga agcggacctg ccggccgtag tggtgggggt
     1021 tgccgccgtc gtcggcgaac gccgcgccgg ccgtcaacga cgccagtacg atgagaatcg
     1081 cagtcttgcg catcgctcta ggaagaaccc accagcctgg ctggtcaagg ttcagtgtgg
     1141 ggcgatctgc gcttgtaccg ggaacgtgcg ctcgacctgg tccagctcgg tggtgagcgt
     1201 accttggagc gtcatcggct tatcgctcga cgaatccagg ggaacttcga cgacgaccgc
     1261 cgctcccgcg gggacgtcgc gctcgagcgg gacctcaccg gtcgagaccg tcgcgccatc
     1321 ggcggcgaac gtgtagtcga gcttggtcag cttgagcggg tggttcgcgg ggttcgtgac
     1381 ctggacgaac acgacctgct gctgctgggt ggcggcctga tcgtgaacgc cgagcacgcg
     1441 gagctgcggg ttaccgccgg ccgactggca ggcaccgaac aggagaccga gaacgaggcc
     1501 gaacagaaga gcgagagaca agcgcatgac gagccgggac gcctattctg ctgcttctgt
     1561 gccagcgagc aagaaaacgc aagtgtgcgt gacgccaaag aagtcgcgac gacgggtc
//
LOCUS       DATDDI010000583         3172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_324856, whole genome shotgun sequence.
ACCESSION   DATDDI010000583 DATDDI010000000
VERSION     DATDDI010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324856"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..1074)
                     /locus_tag="VIU37_08385"
     CDS             complement(136..1074)
                     /locus_tag="VIU37_08385"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6014011.1"
                     /translation="MTEIKIGALCWNQYTDWPALLEAGVRAERLGYDTLWTWDHLYPI
                     VGSHEGPIFEGWLTLAAWAQATERIRIGLMVGANTFREPTLTAKMATTLDHISNGRAI
                     LGIGAAWFRTEHEAYGLRFGDGPPERLRWLAEALPIMRGMLHGERPTATGPRYAAKAI
                     GNDPLPVQKHLPLLIGGSGEKVTLKLVARYADANNVGGGFEEVRRKEAILLQHCEAVG
                     RDPSEIERTTGMGTIIIRDSRAEASRVRKRMFERNGGAAASIDELVGTPEDVAEGIAP
                     LLEIGYRHILVDYGSPYDEETMTRFATEVRRLLERA"
     gene            complement(1115..>3172)
                     /locus_tag="VIU37_08390"
     CDS             complement(1115..>3172)
                     /locus_tag="VIU37_08390"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEY6014012.1"
                     /translation="RLLLDRSVLTGESIPEEGRVAPDPVDAPLASRHSIAYSGTSVVG
                     GRGEGIVVAIGRATEFGLIAGGLVSRERRRSPLQRELDRLVRILLVVAIGLIVLTSGL
                     GFVRGHPLGENVLAGISSAIAAIPEEPPVLLAVILGLGAYRLLKRGVLVRRLNAEETL
                     GAVDLIVTDKTGTITQNRLEVSSVRTPDGPVEDPAVRTSLLEEALRAEEDAWPGEGVV
                     PASFTRALRAAVAAAGGTTVLDAAELIDAEPASDTLPVTRTRARRDDYEEGLALGAPE
                     VVLAYVATGSPNPSEQARWEQLIEASAAAGERLVGLARRVGDGPWHMRALVGFADPIR
                     PGIAEAMGTARAAGVQVIVVTGDHPRTAATIAREAGLDADTVVTGEELASWDDARLAA
                     ELPALHVVARSTPEQKLRLVRAARTDRRIVAVTGDGVNDAPALHGADVAVAMGSGTAV
                     AREASDLVLGDDSFATLMFGLAEGRRIVDNVQKGLVFIVSTHVAFLGFILISTLFVAE
                     RQVLVPLQILWMELFIDLSTSIAFEREPPEPQIMTRPPRHAEQPLLTNGILAGIVGAG
                     GFTAVAALVVMLTHGGDFRHAAWLAYTTLVVGQCVRAYWNRSVRVPIHRLGRNGFLLA
                     AGLAAVAVQVLIPFVPPLAEAFHATTLDPTDWLLVVGVAFAPALVAELGRMRGRGARI
                     WVA"
BASE COUNT          451 a         1149 c         1142 g          430 t
ORIGIN      
        1 cggcgctggt gcgacatggc gacctgcggc aaccgggcga aggcggcacg ccaccgggcg
       61 cgcgcgaagg gggccgcgca ggcctttacc gccgggccgg attcgccccc ggcgctggac
      121 ctcctgccct gaccgtcagg ctcgctcgag cagccgcctg acctcggtcg cgaagcgggt
      181 catcgtctct tcgtcgtagg gcgacccgta gtccacgagg atgtggcggt agccgatctc
      241 cagcagcggc gcgatgccct cggcgacgtc ctccggggtc ccgacgagct cgtcgatcga
      301 ggcggcggcg ccgccgttcc gctcgaacat ccgcttgcga acccgtgacg cctccgcgcg
      361 cgagtcgcga atgatgatcg tgcccatccc ggtcgttcgc tcgatctccg acggatcgcg
      421 gccgacggcc tcgcagtgct ggaggaggat cgcctccttg cgcctgacct cctcgaaccc
      481 gccgcccacg ttgttggcat ccgcgtagcg ggcgacgagc ttgagtgtca ccttctcgcc
      541 ggatccgccg atgaggagcg gcaggtgttt ctggacggga agcgggtcgt tcccgatcgc
      601 cttggccgcg tagcgcgggc cggtggccgt tggccgctcg ccatggagca tgccgcgcat
      661 gatcgggagc gcctcggcca gccagcggag ccgttcgggc ggtccgtcgc cgaagcgcag
      721 gccataggcc tcatgctcgg tccggaacca ggccgcgccg atgcccagga tcgcccggcc
      781 gttcgagatg tggtccaggg tcgtcgccat cttggccgtc agggtcggct cccggaacgt
      841 gttggcaccg accatcagcc cgatgcggat ccgctcggtc gcctgcgccc acgcggccag
      901 cgtcagccag ccctcgaaga tggggccctc gtggctgccg acgatcggat agaggtggtc
      961 ccaggtccag agcgtgtcat agccgagccg ttccgcgcgg accccggctt cgaggagggc
     1021 cggccagtcg gtgtactggt tccaacatag ggcgccgatc ttgatttctg tcatgcgggc
     1081 cagtctaggc cggttctcgg cgtcgttccc gcgatcaggc gacccagatc ctcgcaccgc
     1141 ggccacgcat ccggccgagc tcggccacca gggcaggggc gaacgcgacg ccgacgacga
     1201 gcagccagtc ggtcgggtcg agcgtggtcg catggaacgc ctcggccagc ggcggcacga
     1261 acgggatgag cacctggacc gcgaccgcgg ccagcccggc cgcgagcagg aagccgttcc
     1321 ggccgagccg gtggatcggg acgcggacgc tccggttcca gtaggcccgg acgcactgtc
     1381 cgacgacgag cgtcgtgtag gcgagccagg ccgcgtgccg gaagtcgccg ccgtgagtca
     1441 gcatcaccac gagcgcggca accgccgtga acccgccggc gccgacgatg ccggcgagga
     1501 tcccattggt gagcagcggc tgctcggcgt ggcggggtgg ccgggtcatg atctgtggct
     1561 ccggtggctc tcgctcgaac gcgatcgagg tcgacaggtc gatgaacagc tccatccaca
     1621 ggatctggag cggcacgagc acctgtcgct cggccacgaa gagcgtcgag atgaggatga
     1681 accccaggaa cgccacgtgg gtcgagacga tgaacacgag gcccttctgg acgttgtcga
     1741 cgatgcgccg gccctcggcc agcccgaaca tcagcgtggc gaacgaatcg tcgcccagca
     1801 ccaggtcgga ggcctcccga gcgacggccg tgccgctgcc catcgcgacc gcgacatccg
     1861 caccgtggag cgcgggcgcg tcgttcacgc cgtcgccggt gaccgccacg atccgacgat
     1921 cggtgcgggc ggcccgcacc aggcgcagct tctgctccgg cgtcgagcgg gccaccacat
     1981 ggagggccgg cagctcggcg gcgagccggg cgtcgtccca gctcgcgagc tcctcgccgg
     2041 tgacgacggt atccgcatcg aggcccgcct cgcgggcgat cgtcgcggcc gtgcgcggat
     2101 ggtccccggt gacgacgatc acctgcacgc ccgcggcgcg ggccgttccc atcgcctccg
     2161 cgatcccggg ccggatcgga tccgcgaacc cgaccagcgc gcgcatgtgc caggggccgt
     2221 cgccgacgcg ccgggcgagg cccaccagcc gttcgccggc tgccgcggac gcctcgatca
     2281 actgctccca gcgcgcctgc tccgatgggt tcggcgagcc ggtggccaca taggcgagga
     2341 cgacctcggg tgcgccgagt gccaggccct cctcgtagtc gtcgcgacgt gcccgcgtcc
     2401 gcgtgaccgg aagcgtgtcg gacgccggct cggcgtcgat cagctcggcc gcgtccagga
     2461 cggtggtgcc gcccgcggcg gcgacggccg ctcggagggc tcgcgtgaac gacgccggca
     2521 cgacaccctc gccgggccag gcgtcttctt ccgcgcggag ggcctcctcc agcagggacg
     2581 tccgcaccgc cgggtcctcg accggaccgt ccggcgtgcg gacggacgag acctcgagcc
     2641 ggttctgggt gatcgtcccg gtcttgtcgg tcacgatcag gtccaccgcg ccgagcgtct
     2701 cctcggcgtt gagccggcgg accagcacgc cgcgcttgag gagccggtag gcgccgaggc
     2761 ccaggatcac cgcgagcagg accggtggct cctcggggat ggccgcgatg gccgacgaga
     2821 tgccggccag cacgttctcg ccgagcgggt ggccgcgcac gaacccgaga ccactggtca
     2881 gcacgatcag gccgatcgcg accacgagca ggatccggac cagccggtcg agctcgcgct
     2941 ggagcggcga ccggcgccgc tcgcgcgaca ccaggccacc cgcgatcaac ccgaattccg
     3001 tcgcgcgtcc gatcgcgacc acgatgccct cgccccggcc gcccacgacg ctcgtgcccg
     3061 agtaggcaat cgaatgccgg ctggcgagcg gggcgtcgac cgggtccggg gcgacgcggc
     3121 cctcctcggg gatcgactcg ccggtgagga cgctccggtc gagcaggagg cg
//
LOCUS       DATDDI010000584         1640 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_387505, whole genome shotgun sequence.
ACCESSION   DATDDI010000584 DATDDI010000000
VERSION     DATDDI010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387505"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1033)
                     /locus_tag="VIU37_08395"
     CDS             complement(158..1033)
                     /locus_tag="VIU37_08395"
                     /inference="COORDINATES: protein motif:HMM:TIGR01460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEY6014013.1"
                     /translation="MRTVDPALLRDALRGVRGLLLDLDGVIVSAGKAVPGSVDAVNEL
                     ERRGMTYRIVTNTSLISRRSLSELAARLGNRIPPERFQSALSASADYAARAYAGQPLY
                     VLSSADAKREFDGQWLLTHDEAGAPGARAAAVIVGDSPDELTNRNLNLAFRLVRGGAR
                     LIGMHRNPWWLTADGPTLDSGAYVAGLEYAAGVRAQIIGKPAPAFFSLAVDALRREAT
                     ARGDRLRRSEIAMVGDDVRTDVLAGQRAGLRGVLVLTGKHGLDAVATSHGHGRGGREP
                     HAVAPSLADVVAALD"
     gene            1099..>1640
                     /locus_tag="VIU37_08400"
     CDS             1099..>1640
                     /locus_tag="VIU37_08400"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6014014.1"
                     /translation="MGLLDGRNALIFGVANDHSIAWGIARALHDAGADVGFSSVESLI
                     ERRVRPLAESIGSTFVEPCDVQSDEQIRAVFERYAERHASLDVLVHALAFARREDLEG
                     AFVDTSRDGFALALDVSAYSLVALVREARPLLRAGSSVMTLSYYGAEKVVANYNVMGV
                     AKAALEASVRYLAADLGPEGV"
BASE COUNT          216 a          574 c          604 g          246 t
ORIGIN      
        1 tcggccctga cggtcgccag gccggcttcg aactgggcgt gcaggtcctc gttgtcggcc
       61 cgcagcgtgg cgtaggtgat cttgattcgc ggtgcggatt cggtcgtcat gacgtgtgcc
      121 tcgtggcgga tcgggctgac cggacggaag gttgccgtca gtctagcgcg gccacgacgt
      181 cggccagcga cggcgccacg gcgtgtggct cccggccgcc gcggccgtgg ccgtgcgacg
      241 tcgcgaccgc gtcgagcccg tgcttgccgg tcaggaccag cacgccgcgc agcccggcac
      301 gctggcctgc cagcacgtcg gttcggacgt cgtcgccgac catcgcgatc tcggatcgcc
      361 ggaggcgatc cccgcgggcg gttgcctcgc ggcggagcgc gtccaccgcg agcgagaaga
      421 acgcgggtgc cggcttgccg atgatctggg cgcggacccc cgccgcgtac tcgagcccgg
      481 ccacgtacgc gcccgaatcg agggtcgggc cgtcggccgt cagccaccac gggttccgat
      541 gcatgccgat cagcctggcc ccgccgcgga ccagccggaa cgccaggttg aggttgcggt
      601 tggtcagctc gtcgggcgag tcgccgacga tgaccgctgc cgcccgggca ccgggcgccc
      661 cggcctcgtc gtgggtcagc aaccactggc cgtcgaactc gcgcttggcg tccgcggacg
      721 agagcacgta cagcggctgg ccggcgtacg cccgggccgc gtagtccgcc gacgccgaca
      781 gggccgactg gaaccgctcg ggcgggatcc ggttgccgag cctcgccgcg agctccgaca
      841 gcgaccggcg gctgatgagc gacgtgttgg tcacgatccg gtaggtcatc cctcgccgtt
      901 cgagctcgtt gaccgcatcc accgagcccg gaaccgcctt cccggccgac acgatcaccc
      961 cgtcgaggtc gagcaggagc ccgcggacgc cacgcagggc gtcgcggagg agggcggggt
     1021 cgacggtgcg catcctgcgt agcgtagtcg gatcgccggg tatgctggga cggacgcccg
     1081 cgcaaccgga ggagacggat ggggctgctg gacggcagga acgcgctgat cttcggggtc
     1141 gccaacgacc actcgattgc ctggggcatc gcacgtgccc tccacgacgc gggggcggac
     1201 gtcggcttct cgtcggtcga aagcctcatc gaacgacgcg tgcgaccgct ggccgagtcg
     1261 atcgggtcga ccttcgtcga gccctgcgac gtccagtccg acgagcagat ccgggcggtc
     1321 ttcgagcgct atgccgagcg ccatgcgtcg ctcgacgtcc tcgtccacgc cctggcattc
     1381 gcccggcggg aggacctcga gggggccttc gtcgacacgt cccgcgacgg gttcgcgctg
     1441 gcgctcgacg tgtcggccta ttcgctcgtt gcgctcgttc gcgaggcgag gccgctgctg
     1501 cgggccggct cgtccgtcat gaccctgtcc tactatgggg ccgagaaggt ggtcgccaac
     1561 tacaacgtca tgggcgtcgc gaaggcggcg ctcgaggcat cggtgcgcta tctcgcggcc
     1621 gacctggggc ccgagggcgt
//
LOCUS       DATDDI010000585         3887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_116727, whole genome shotgun sequence.
ACCESSION   DATDDI010000585 DATDDI010000000
VERSION     DATDDI010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116727"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..857
                     /locus_tag="VIU37_08405"
     CDS             138..857
                     /locus_tag="VIU37_08405"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6014015.1"
                     /translation="MHPQATISRSVLSDQVKDRLLQAILDGRYPPGARIVETRVAREL
                     GTSQAPVREALRDLEALGVVETTAFRGARVRRPSTAELLEAFVIRAELESLAATLAMP
                     RLTDADIDELDGYVTEMQRAAAVGDTHAEATADAAFHGRVVEMAGNSTLLRVWRTLEP
                     FSRTYITIVAPGADRRQIADQHLPVLDALRQRSTDLAVEVLHQHFANAAAMLGRLWGD
                     DGAANAPHQADDTPVLIERSA"
     gene            888..1775
                     /locus_tag="VIU37_08410"
     CDS             888..1775
                     /locus_tag="VIU37_08410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014016.1"
                     /translation="MSDQLQLSEEMSAGAARLRVDVFGDAPREHVLDDLHFLNYRLAD
                     VRISPEVTLAVPDITWHQDGDKAIAYDGRTMAFTGPWPAGPIQKVIVAMLALRMEAVG
                     LHPFHASAVRYRGRTVMFLGGESNHGKSMGQIEACRRGAQLVSTETTVVDEDARAVMG
                     SKSVFLKKRTEGTERADKAAPERGVQKFFGDMPSWEQYDAPSTVDVVVVPAIDGNFDP
                     SLAEMIPFERQFQTLHSLQNYFLLNELLAPGLPMPIVDNEMLRQARAAFVARFSDRPY
                     YFVRAATPQVLLDEVDRIL"
     gene            1791..2660
                     /locus_tag="VIU37_08415"
     CDS             1791..2660
                     /locus_tag="VIU37_08415"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY6014017.1"
                     /translation="MQPFIYARPATVAEAIAILQEHGPDARVLAGGTDLIIRLRDRSV
                     RPTVVVDVKRIAELDPAILEVDGRLRIGATTVMTDIVADERVQRRFPALVEAAAVVGS
                     VQIRNRATLAGNLCNASPAADTAPALLVYGADVVAAGPSGTRRIPLTDFFVRSGQTTL
                     ARGELVTAIELPLPARPTGSAHVRRTRRRGHDLASVTLAVAIDDTGRTRLAYGSVGPR
                     PVLVVDDSGVLADRHAADADRTAVLDRLLVDASPSPRSMRAGPEYRLAMLRVLAVRAV
                     RTALDRLAGGAAA"
     gene            2657..3133
                     /locus_tag="VIU37_08420"
     CDS             2657..3133
                     /locus_tag="VIU37_08420"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY6014018.1"
                     /translation="MTTTLPIELTVNGRSRRLEVAPHHTLLDVLRDDLGLTGTKECCL
                     VGECGACTVRLDGRIVDSCLVLAVEADGAAVTTIEGLAVDGRMSPLQAAFLDKGAVQC
                     GYCIPGQVMAAQDLLERVPHPTVEQIQEGLAGNLCRCGCYGQITEAVLATAEGRDR"
     gene            3130..>3887
                     /locus_tag="VIU37_08425"
     CDS             3130..>3887
                     /locus_tag="VIU37_08425"
                     /inference="COORDINATES: protein motif:HMM:NF013482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014019.1"
                     /translation="MSAGRVGGSPRRVGGQDRVTGQQRYVADMHLPDELHASLVTVPC
                     ARARIVSIDTSAAEQVPGVRLIVSAADLPQPMPRFGPQFQDRPVIAVGETKYHGEPVA
                     AVAADTRDAAAEAAGLVKVDYEELPAVFTVAAALDPGAPLVQDPSLRPNDPLATTNVL
                     REHVIGWGDVDGATADVVVDQRYTFPMVTHFAIEPHAFMAAPDGDGIAVWSSIQHPNW
                     LQRVIAKLLGLPLSKVRVFSPDPGGGFGGKQHTK"
BASE COUNT          564 a         1438 c         1362 g          523 t
ORIGIN      
        1 ggtcggcacc acggtgggca ccgagcagat caagaacggc gaccggatcc ggatcgacgg
       61 gaccagtggc gtggtcgaga tcctcgctgc cgctcccgcg atggccgggg tcgggttcaa
      121 ggactgaccg gccggccatg cacccccaag ccacgatctc gcgcagcgtc ctcagcgacc
      181 aggtcaagga tcgcctcctc caggcgatcc tcgacggccg ctacccgccg ggcgccagga
      241 tcgtcgagac ccgggtggcc cgggagctcg gaacgagcca ggcgcccgtc cgggaggcgc
      301 tgcgcgacct cgaggccctc ggggtcgtgg agaccaccgc attccgggga gctcgcgtcc
      361 gccgtccatc gacggccgag ctcctcgagg ccttcgtcat ccgcgccgag ctggagtcgc
      421 tggcggccac gctggcgatg cccaggctga ccgacgcgga catcgacgag ctcgacggct
      481 acgtgaccga gatgcagcga gcggccgccg tgggcgacac ccacgccgag gcgacggccg
      541 acgcggcgtt ccacgggcgc gtcgtcgaga tggccggaaa ctcgacgctg ctccgcgtgt
      601 ggcgcacgct ggagccgttc tcgcggacct atatcacgat cgtcgcgccc ggggcggatc
      661 gccggcagat cgccgaccag cacctcccgg tgctcgatgc cctccgccaa cggtccaccg
      721 acctcgccgt cgaggtgctc caccagcact tcgccaacgc ggcggcgatg cttggacggc
      781 tgtggggcga cgacggcgcc gccaacgcgc cgcaccaggc ggacgacacc ccggtgctga
      841 tcgaacgatc ggcctgaacc caccgacccg acgagcgaaa ggacgacatg agcgaccagc
      901 tgcaactctc ggaggagatg tcggccggag ccgcccgcct gcgggtggac gtcttcggcg
      961 atgcgccgcg cgagcacgtc ctcgacgatc tgcacttcct caactaccgg ctcgcggacg
     1021 ttcgcatctc gcccgaggtg acgctggccg ttccggacat cacctggcac caggacggcg
     1081 acaaggcgat cgcctatgac ggccggacga tggcattcac cgggccgtgg ccggccggac
     1141 cgatccagaa ggtgatcgtc gccatgctcg cgctgcggat ggaggccgtc gggctccatc
     1201 cgttccatgc ctccgccgtc cgctaccggg gccgcacggt gatgttcctc ggcggcgaat
     1261 ccaaccacgg caagtcgatg ggtcagatcg aggcctgccg gcgaggcgcc cagctcgtct
     1321 cgaccgagac gaccgtggtc gacgaagacg cacgggccgt catgggctcg aaatcggtct
     1381 tcctcaagaa gcgcaccgaa ggcaccgagc gcgccgacaa ggccgcaccc gagcgcggcg
     1441 tccagaagtt cttcggcgac atgccgagct gggagcagta cgacgcgccg tcgaccgtcg
     1501 acgtcgtcgt cgtgcccgcc atcgacggca acttcgaccc gagcctggcc gagatgatcc
     1561 cgttcgagcg gcagttccag acgctccatt cgctccagaa ctacttcctg ctcaacgagc
     1621 tgctggcacc gggcctcccg atgccgatcg tcgacaacga gatgctccgc caggcccggg
     1681 cggcgttcgt cgcccggttc tccgaccgcc cgtactactt cgtccgtgca gccaccccgc
     1741 aggtgctgct cgacgaggtc gaccggatcc tctgaggcgc gacgacagcg atgcagccgt
     1801 tcatctacgc ccgcccggca accgtggccg aggcgatcgc catcctccag gagcacgggc
     1861 ccgacgcccg ggtcctcgcc ggcggcaccg acctgatcat ccgcctgcgc gatcggtcgg
     1921 tccgtccgac ggtcgtcgtc gacgtcaagc ggatcgccga gctcgatccc gccatcctcg
     1981 aggtggacgg ccgcctccgc atcggcgcga cgacggtgat gaccgacatc gttgccgacg
     2041 agcgggtgca acggcgcttc cccgcgctgg tcgaggcggc cgccgtggtc ggctcggtcc
     2101 agatccgcaa ccgcgcgacg ctggccggca acctgtgcaa cgcgtcgccg gccgccgaca
     2161 ccgcccccgc cctgctcgtg tacggcgccg acgtcgtcgc cgcgggcccg tcggggacgc
     2221 ggcggatccc gctgaccgat ttcttcgttc gatcgggcca gacgaccctc gcccggggcg
     2281 agctcgtgac cgccatcgag ctgccgctgc ccgcccggcc gacgggttcc gcgcacgtcc
     2341 gccggacgcg acgtcgcggc catgacctgg cgtccgtgac gctggccgtc gcgatcgacg
     2401 acaccgggcg cacgcggctg gcgtacggca gcgtcggccc gcggccggtc ctcgtcgtgg
     2461 acgacagcgg cgtgctcgcc gaccgccacg cggccgatgc cgaccggacg gccgtcctcg
     2521 atcgactgct cgtcgacgcg agcccgtcgc cccgctcgat gcgggcgggt ccggagtacc
     2581 ggctggccat gctgcgcgtg ctggccgtgc gggcggtgcg caccgcgctc gaccggctgg
     2641 ccgggggagc ggcggcatga cgacgaccct gccgatcgag ctgaccgtga acgggcggtc
     2701 gcgccggctc gaggtcgcgc ctcaccacac cctgctcgac gtcctgcgcg acgatctcgg
     2761 gctgaccggc acgaaggagt gctgcctggt gggcgagtgc ggtgcctgca ccgtccgcct
     2821 ggacgggcgg atcgtcgatt cgtgcctcgt gctcgcggtc gaggccgacg gcgcggccgt
     2881 cacgacgatc gaaggcctcg cggtcgacgg ccggatgagc ccgctccagg cggcgttcct
     2941 cgacaagggc gccgtgcagt gcggctactg cattccgggc caggtcatgg ccgcgcagga
     3001 cctcctcgag cgcgtgccgc acccgaccgt cgagcagatc caggagggcc tggccggcaa
     3061 cctgtgccgg tgcggctgct acgggcagat caccgaggcg gtgctcgcca cggccgaggg
     3121 tcgggaccga tgagcgcggg acgggtcggc gggtcgcccc gccgcgtcgg cgggcaggac
     3181 cgggtcaccg ggcagcagcg ctacgtcgcg gacatgcacc tgccggacga gctccatgcc
     3241 agcctggtca cggtgccctg cgcccgggcg cggatcgtgt cgatcgacac gagcgccgcc
     3301 gagcaggtcc cgggcgtcag gctgatcgtg tccgcggccg acctgcccca gccgatgccg
     3361 cggttcggcc cgcagttcca ggaccggccg gtgatcgcgg tcggcgagac gaagtaccac
     3421 ggcgagccgg tggcggccgt ggcggccgac acgcgggacg ccgcggcgga ggcggccggg
     3481 ctggtcaagg tggactacga ggagctgccg gccgtcttca ccgtcgctgc ggcgctcgat
     3541 ccgggcgcac cgctcgtcca ggacccgagc ctccgaccga acgacccgct ggccaccacc
     3601 aacgtcctgc gcgagcacgt catcgggtgg ggcgacgtgg acggggcgac cgccgacgtc
     3661 gtcgtcgacc agcgctacac cttcccgatg gtcacccact tcgcgatcga gccgcacgcg
     3721 ttcatggccg cacccgacgg cgacgggatc gccgtgtgga gctcgatcca gcatccgaac
     3781 tggctccagc gggtcatcgc caagctgctc ggcctgccgc tctcgaaggt tcgcgtgttc
     3841 tccccggatc ccggcggcgg attcggcggg aagcagcaca cgaagta
//
LOCUS       DATDDI010000586         1771 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_408412, whole genome shotgun sequence.
ACCESSION   DATDDI010000586 DATDDI010000000
VERSION     DATDDI010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408412"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1746)
                     /locus_tag="VIU37_08430"
     CDS             complement(<1..1746)
                     /locus_tag="VIU37_08430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014020.1"
                     /translation="MPLYVEEFAAAVHAEGTVTIEAGVATLSRDDLPIPDTLRDSVLT
                     RADGLPTRTREALAVAALMGDRATARLVDELVPGPAGWVRAGADAGILAGTEDGSITF
                     RHALIRDVLAQDLPSPERRARHAAIAAILGTRGGDPLEIAEHWLAADDAAEGVRRLIE
                     AGEAFVRVHAFRDAATAFRRALDEDRGTLADRVGVLERFAECSELSGAIGESARAWAA
                     AAEARAAAGDEGAAAGDQRRRARALEVQGRWKRAIEARLAAAAGFSGIGAAADAAVER
                     LAAATHLRSAASFSAALEVLSFALEDAMAAGRPDLEARAMGLKGNVLARLGETELGLE
                     LVRAGLARSLDHGAAGAAAELYQRLADSLEHGGRYESARNAYLEGAAYCRTQALEPTA
                     QLCLACMAVVLWQTGDWSGAERTCRDVIASSDATAHARTVADGILGLVLAARGRPVSA
                     RPHLEAALTLARRIELTAMDLFATWGLAIADRLDGDLDTAEERCRELVARWDRTEERH
                     YVVPMLRWAATFHADRGDGAAVRACAEALARIAAQTGQPEAVAALGLALGEAARLDGD
                     ASGAADHLGRALDLLS"
BASE COUNT          220 a          688 c          656 g          207 t
ORIGIN      
        1 ggacagcaga tcgagcgcgc gcccgaggtg gtcggcggcc cccgatgcgt cgccgtcgag
       61 acgcgccgcc tcgccgagtg cgagcccgag cgccgcgacg gcttcgggct gcccggtctg
      121 ggcggcgatg cgggcgagcg cctcggcaca cgctcgaacc gccgcgccat cgccgcgatc
      181 ggcgtggaac gtggccgccc accgcagcat cggcacgacg taatggcgct cctcggtccg
      241 gtcccagcgg gccacgagct cgcggcatcg ctcttcggcc gtgtcgaggt cgccatcgag
      301 ccgatccgcg atcgccaggc cccacgtggc gaagaggtcc atcgccgtca gctcgatccg
      361 ccgggccagc gtcagggccg cctcaaggtg cgggcgggcg ctcaccgggc ggcctcgagc
      421 cgccaggacc aggccgagga tgccgtcggc cacggtgcgg gcatgcgcgg tcgcgtccga
      481 cgaggcgatc acgtcgcggc acgtgcgctc cgcgcccgac cagtcgcccg tctgccagag
      541 caccacggcc atgcacgcca ggcacagctg ggcggtcggc tcgagcgcct gcgtgcggca
      601 atatgccgcc ccctccaggt aggcgttgcg ggcggactcg taccggccgc cgtgctcgag
      661 tgaatccgcc aggcgctggt acagctcggc cgcggcgccg gcggccccat ggtccagcga
      721 ccgggcaagg ccggcgcgaa ccagctcgag cccgagctcg gtctccccga gcctggccag
      781 gacgttgccc ttgaggccca tcgcgcgagc ctcgagatcc gggcgaccgg cggccatcgc
      841 atcctccagg gcgaacgaga gcacctcgag cgccgcgctg aagctggccg ccgaacggag
      901 gtgcgtggcg gccgccagcc gctcgacggc ggcgtcggcc gccgccccga tcccggagaa
      961 ccccgcggcc gcggcgaggc gcgcctcgat cgcccgcttc cagcgaccct ggacctcgag
     1021 cgcgcgagcg cggcgacgct ggtccccggc ggccgcgccc tcgtccccgg cggcggcacg
     1081 ggcttcggcg gccgccgccc aggcccgtgc cgattccccg atcgctcccg acagttcgct
     1141 gcactcggcg aaccgttcca gcacgccgac gcggtccgcc agcgtcccgc ggtcctcgtc
     1201 gagggcccgg cggaatgccg tcgcggcatc gcggaaggcg tggacccgga cgaaggcctc
     1261 gcccgcctcg atcagccggc gcacgccctc ggcggcgtcg tcggccgcga gccagtgctc
     1321 cgcgatctcg agggggtccc cgccgcgcgt ccccaggatg gcggcgatcg cggcgtgccg
     1381 ggcgcggcgc tccggggacg gcagatcctg ggcgagcacg tctcggatga gcgcgtgccg
     1441 gaacgtgatg gacccgtcct cggtaccggc caggatcccg gcgtcggccc ccgcgcggac
     1501 ccagccggcg ggaccaggga cgagctcgtc cacgagccgg gcggtggctc gatcgcccat
     1561 gagcgcggcg accgccagcg cctcgcgggt ccgcgtggga agaccgtccg ccctggtgag
     1621 gacgctgtct cgaagcgtgt cggggatcgg caggtcgtcg cgcgagagcg tggcgacccc
     1681 ggcctcgatg gtcacggtgc cctcggcgtg caccgccgcc gcgaattcct cgacgtacag
     1741 cggcacgccc tggcttcgtt cgatcaggcg t
//
LOCUS       DATDDI010000587         1846 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_470564, whole genome shotgun sequence.
ACCESSION   DATDDI010000587 DATDDI010000000
VERSION     DATDDI010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470564"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..1043
                     /locus_tag="VIU37_08435"
     CDS             180..1043
                     /locus_tag="VIU37_08435"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase family
                     protein"
                     /protein_id="HEY6014021.1"
                     /translation="MLPTLATIGPLEIGTHDAFTAAALLLGLALYYRELRRRRLLDGT
                     IVWISLAVVLGGVIGARLLLAWDHLDYYSQALRTMPLSWVVEHSGKSIIGAIVGGYVA
                     GVLAKRAVGYTRSTGDCYALAIAAAMAVGRIGCFLSELPLGTPTSLPWGVTVPASAAL
                     TFARCPGCDGPMHPSQLYEVLFNLVAAGAIVRYGRRVPAPGDVLKLYLLAAAVFRFGV
                     EFVRANPTTAFGLSSPQLVLIPLLILLVAHFARQARRGAWSVPPPPPPRGLLIAAPVP
                     LGPQRVQELTP"
     gene            1040..1615
                     /locus_tag="VIU37_08440"
     CDS             1040..1615
                     /locus_tag="VIU37_08440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014022.1"
                     /translation="MTQPPTERPSDSPTQPSPEPTPAPPPWELPTSPRTDLTNAELVG
                     YFETQLEWTTADNLAWVAGQSGYSREAVAAALDEAQRRRAAVRDRMGGLKTQARGITI
                     LAYALGFLVIVAPLIGTNDSYGLVPMILMIWAALGATTLGLSLFAISRRRGAPAGTGI
                     ALASLLAIPAVLFVAFPGTCLWLFVTSQIRY"
     gene            1631..>1846
                     /locus_tag="VIU37_08445"
     CDS             1631..>1846
                     /locus_tag="VIU37_08445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014023.1"
                     /translation="MPDLRPYKPLRMVLTVCGECLTGEPDRPIDYERDILQGGLVEMD
                     GAIWLRRTCRRGHGEVMSLYEEDAARWT"
BASE COUNT          228 a          714 c          628 g          276 t
ORIGIN      
        1 ggtcgtctac gccgtctacc tcgaccgctg caagctccgg cgcgaggagg agacgctgct
       61 ggcccgatac ccggcctacg cgtcgtatca gcggcaggtg cgccaccgga tgtggccgac
      121 ctggccgggc ggcggcgtac accgaccgcc ggtcgtcgcg ggccggtagg tccggcgcga
      181 tgctcccgac gctggccacg atcgggccgc tcgagatcgg gacccacgac gcgttcacgg
      241 ccgccgcgct gctgctcggc ctggccctgt actaccgcga gctccggcgc cgacggctgc
      301 tggacggcac gatcgtctgg atctcgctgg cggtcgtcct cggcggggtc atcggggcgc
      361 gattgctgct ggcctgggac cacctcgact actacagcca ggcgctgcgg acgatgcccc
      421 tgtcgtgggt cgtggagcac agcggcaaga gcatcatcgg ggcgatcgtc ggcggctacg
      481 tcgccggcgt gctggccaag cgagcggtcg gctacacccg ctcgaccggt gactgctacg
      541 ccctcgcgat cgccgcggcg atggccgtcg ggcggatcgg ctgcttcctc tcggagctgc
      601 cgctcggcac gccgacgagc ctcccgtggg gcgtcacggt gcccgcctcc gcggcgctga
      661 cgttcgcccg ctgcccgggc tgcgacggtc cgatgcaccc gagccagctc tacgaggtgc
      721 tgttcaatct cgtcgcggcg ggcgccatcg tccggtacgg ccgccgcgtc ccggcccccg
      781 gcgacgtgct caagctctat ctcctcgccg cggccgtgtt ccgcttcggc gttgagttcg
      841 tccgggccaa tcccacgacg gcattcggcc tgtcgagccc ccagctcgtc ctgatcccac
      901 tgctcatcct gctcgtcgcc catttcgcgc ggcaggcacg gcgcggcgcc tggtccgtcc
      961 cgccaccgcc gccgccgcgg gggctgctca tcgccgcacc ggtccccctg ggaccccaac
     1021 gcgtccagga gctgacgcca tgacccagcc accgaccgag cgaccgagcg attcacccac
     1081 ccagccgagc cctgagccca caccggcgcc gccgccgtgg gagctgccca ccagcccgcg
     1141 caccgacctg acgaacgccg agctcgtcgg ctacttcgag acccagctcg agtggacgac
     1201 cgccgacaac ctcgcgtggg tcgccgggca atctggctac tcgcgcgagg ccgtcgccgc
     1261 cgcgctcgac gaggcccagc gccggcgtgc cgcggtgcgg gaccggatgg gcggcctgaa
     1321 gacccaggcc cgcggaatca cgatcctcgc ctacgcgctc ggattcctcg tgatcgtcgc
     1381 gccgctgatc ggcaccaacg acagctacgg cctcgtgccg atgatcctca tgatctgggc
     1441 ggccctgggg gcgacgacgc ttggcctgtc gctgttcgcc atctcgcgcc ggcgcggcgc
     1501 ccccgccggg accggcatcg ccctcgcctc gctgctggcg atcccggcgg tcctgttcgt
     1561 cgcgttcccc ggaacctgcc tctggctctt cgtcacgtcg cagatccggt actgagccgg
     1621 agcgcggcag gtgccggacc ttcgcccgta caagccgctg cggatggtcc tgaccgtctg
     1681 cggcgagtgc ctcaccggcg agcccgaccg tccgatcgac tacgagcggg acatcctcca
     1741 gggcggcctc gtcgagatgg acggcgccat ctggctgcgc cggacctgcc ggcggggcca
     1801 cggcgaggtc atgagcctgt acgaggagga cgcggcgcgc tggacc
//
LOCUS       DATDDI010000588         2130 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_116743, whole genome shotgun sequence.
ACCESSION   DATDDI010000588 DATDDI010000000
VERSION     DATDDI010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116743"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..870
                     /locus_tag="VIU37_08450"
     CDS             <1..870
                     /locus_tag="VIU37_08450"
                     /inference="COORDINATES: protein motif:HMM:NF020920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014024.1"
                     /translation="AKWLKVTGDLAWRRPIASLNYILSSLVWRQDHNGFSHQDPGFID
                     HVVNKKSDVIRVYLPPDANCLLSVGDHCLRSRHYVNVIVAGKQPGPNWLPMDQAILHC
                     TRGIGIWDWASNDGNGEPDVVIASAGDIPTVEALAAVDLLRRHLPELKVRFVNVVDLM
                     RLQPASEHPHGLSDVEFDSLFTTDRPVIFAYHGYPWLIHRLTYRRTNHPNLHVRGYKE
                     EGTTTTPFDMVMLNDLDRFHLVIDVIDRVPGLASRAGHVRQLMVDKRMEARAYTRLEG
                     EDAPEIANWTWPQ"
     gene            858..2021
                     /locus_tag="VIU37_08455"
     CDS             858..2021
                     /locus_tag="VIU37_08455"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006083 - acetate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HEY6014025.1"
                     /translation="MAAVGGAGAGGGGPAGAEQPGRDRILVVNAGSSSLKLRVLDAGD
                     AIVASADLPAPRGSTDAVAAADAIRGFGPVGAVGHRIVHGGTQFSSPVRIDASVVVRL
                     RALTDLAPLHQPKSLAALDVVSGVLPDVPAVACFDTAFHATLPPAASTYALPPEWRKR
                     WDLRRYGFHGLSHAYASRRVTELLGRSADGLRLITCHLGAGASLAAILDGRSVDTTMG
                     FTPLEGLVMATRSGSVDPGLVLWLEEHAGTPPAELAATLEHRSGLLGLAGTADMRAIV
                     DAAAAGGADARLALDVYVHRLRGAIAAMAASLGGIDALVFTGGVGEHAPAVRALAAET
                     LGFLGIELDATRNEHGPDEREIGAPGAAVRTFVIVAREDLQIVHEVREVLGAS"
BASE COUNT          293 a          775 c          758 g          304 t
ORIGIN      
        1 gcgaaatggc tgaaggtaac cggcgacctg gcctggcggc gcccgatcgc gtcactcaac
       61 tacatcctga gctcgctcgt ctggcgccag gaccacaacg ggttctcgca ccaggacccc
      121 gggttcatcg accacgtcgt gaacaagaag tcggacgtca tccgggtcta cctgccgccg
      181 gacgccaact gcctgctgtc ggtcggggat cactgcctgc gcagccggca ctacgtcaac
      241 gtcatcgtcg cgggcaagca gcccgggccg aactggctgc cgatggacca ggcgatcctc
      301 cactgcaccc gcgggatcgg gatctgggac tgggccagca acgacggcaa cggtgagccg
      361 gacgtggtca tcgcctcggc cggcgacatc ccgacggtcg aggcgctggc cgccgtcgac
      421 ctcctccgcc ggcacctgcc cgagctcaag gtccgcttcg tcaacgtggt cgacctgatg
      481 cggctccagc cggcgtcgga gcatccgcac ggcctgtccg acgtcgaatt cgactcgctg
      541 ttcacgaccg accggccggt gatcttcgcc taccacggct acccgtggct gatccaccgg
      601 ctgacgtacc gccggacgaa ccatccgaac ctgcacgtcc gcggctacaa ggaggaaggc
      661 acgaccacga cgccgttcga catggtcatg ctcaacgacc tcgaccggtt ccatctggtc
      721 atcgacgtca tcgatcgggt gccgggcctc gccagccggg ccggccacgt ccgccagctg
      781 atggtcgaca agcgaatgga ggcgagggcc tacacgcgac tcgagggcga ggacgccccc
      841 gagatcgcca actggacgtg gccgcagtag gcggcgccgg ggcgggcggc ggcggtccgg
      901 ccggcgccga acagcccggc cgcgaccgga tcctcgtcgt caacgccggc tcgagcagcc
      961 tcaagctgcg cgtcctcgac gccggcgatg cgatcgtggc gtcagcggac ctgccggcgc
     1021 cgcgcggatc gaccgatgcg gtcgcggccg ccgacgcgat ccgcgggttc ggaccggtcg
     1081 gtgcggtcgg gcatcggatc gtgcacggcg gaacgcagtt ctcgagcccg gtccggatcg
     1141 atgcgtccgt cgtggtgcga ctccgcgcgc tgaccgatct ggcgccgctc caccagccaa
     1201 agtcgctcgc ggcgctcgac gtcgtgagcg gcgtcctgcc ggacgtcccg gccgtggcct
     1261 gcttcgacac cgcgttccac gcgacgctgc cgcccgccgc gtcgacctac gcgctgccac
     1321 cggaatggcg aaagcgctgg gacctccgcc ggtacgggtt ccacggtctg tcgcacgcgt
     1381 acgccagccg gcgggtgacc gagctgctcg gccggtcggc cgacgggctg cggctgatca
     1441 cctgccacct gggcgccggg gcgtcgctcg ccgccatcct tgatggacgc tcggtcgata
     1501 cgacgatggg gttcacgccg ctcgagggcc tggtcatggc gacccgatcc gggagcgtcg
     1561 atccgggcct cgtcctgtgg ctggaggagc atgccggaac gccgccggcg gagctggcgg
     1621 ccaccctcga gcaccgctcg ggcctgctcg ggctggccgg gacggcggac atgcgggcga
     1681 tcgtcgatgc cgcggcggcc ggtggggcgg atgcccgcct tgcgctcgac gtctacgtcc
     1741 accggctccg cggcgcgatc gcggcgatgg ccgcctcgct cggcgggatc gacgcgctgg
     1801 tcttcaccgg cggggtcggc gagcacgcgc cggccgtccg cgcgcttgcg gccgagacgc
     1861 tcggcttcct cgggatcgag ctcgacgcca cccgcaacga gcacgggccc gacgagcgcg
     1921 agatcggggc cccgggcgct gcggtccgga cgttcgtcat cgtcgcgcgc gaggatctcc
     1981 agatcgtgca cgaggtccgc gaggtgctcg gggcgtcgta gcctcgaagc gtcggtgggt
     2041 cgagcggacg ccgaggcccg ctatctcggc cgcggcgcgt cgtccatgcg cgtgcggccg
     2101 gacgggtcgg tgccgcctcc ggacttgacc
//
LOCUS       DATDDI010000589         1630 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_449478, whole genome shotgun sequence.
ACCESSION   DATDDI010000589 DATDDI010000000
VERSION     DATDDI010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449478"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(885..>1630)
                     /locus_tag="VIU37_08460"
     CDS             complement(885..>1630)
                     /locus_tag="VIU37_08460"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY6014026.1"
                     /translation="RLVRVTEPGRFALLPRLGISPTVGSLVHEALDRGIAAAEARTPG
                     AVAALDAGCGRVSALRTFRPRIARLVGADIHEPSAPLPHLDEFAVVDLCADGAAFADG
                     TFDLVLSSFTLEHFADPGAALANLRRWLRPGGTLVATTVNRRHPFVAAYLGLPDGPRH
                     AIQPLVKSTAADAHPLVGACNDPASIRSALETAGFVDIRLTTVGHLARAWGRHWPTFA
                     AGLAGDLLTRGAPSRRSTIVVVARVQGPA"
BASE COUNT          239 a          566 c          618 g          207 t
ORIGIN      
        1 ggaagaaccg caggatccgg cggatcgtcc ggccgcgccg ctcgggcggg accggcgtga
       61 agtcgcccat cgaccggccg aacggcccgc cgccgcccat ccgccgactg ccgcccccga
      121 ccgcgccacc ggtggcctgc cgggtctggc cgcgcgggaa gctcatggtg tgcggcctgc
      181 ctggacgaga ggcacccggc ggaagcggag acgccggttc gccatggccc ggtctcggga
      241 ctccgggggc cgctggcgcg tgcggcgaag gacctctccc ggtcgatgac cctcggatgc
      301 atcagcagcg gatgaccgga cagccgcgtc gcccgtggat gagcggaaag acgcatcagc
      361 agcggacgag cggacagccg cgtcgctctt ggatgagcgg acggccgcgt ccccaatgga
      421 cgagcggaca ccgtccccgc ttcggcgggc acctcttggc gcggcggcct gccggtcggc
      481 gctcggtccg atgcatctga ggtgcatcgg caaccggacc cctgcatccg catccgcgcc
      541 ggtgagcgcc gcgtaaggcg gcatcgccat catcgggcga tgccctggga atcctttgac
      601 atgcaggacg tcgatgtgcg cacgttgcgt ggatacggtc ggatcggccg ggcggttcgc
      661 cgtcggcgcg aacggatcgg gctctcccag cgggagcttc accggctgtc cgggatcgat
      721 cagagcgtaa tcagtcgcct ggagaccggc caacttcggg gccttcggtt cagtcgactg
      781 gcacggctgg tcgacgccct cggcgggatc ggcgatgcgg acccactgcc agcgtgggta
      841 actcgataca tgccgacgtc ccgggacggc ccagaccccg gcgctcaagc cggaccctga
      901 acccgcgcca cgacgacgat cgtggagcgg cgcgacggcg cgccacgggt gagcaggtca
      961 ccggccagcc cggccgcgaa ggtcggccag tgccggcccc atgcccgcgc caggtgcccc
     1021 accgtggtca gccggatgtc gacgaatccg gccgtctcga gggcggaccg gatcgacgct
     1081 gggtcgttgc aggcgcccac gagcggatgc gcgtcggcgg ccgtggactt gaccagcggc
     1141 tggatcgcgt ggcgcggtcc gtccggcagg ccgagatagg cggccacgaa cgggtggcga
     1201 cggttgacgg tagtcgcgac aagggtcccg ccgggccgga gccagcgtcg gaggttggcc
     1261 agcgcggcgc ccggatcggc gaagtgctcg agcgtgaagc tggacaggac gaggtcgaac
     1321 gtgccgtcgg cgaaggccgc gccatcggcg cacaggtcga cgacggcgaa ttcgtcgaga
     1381 tggggcaggg gagcgctcgg ctcgtggatg tccgcgccga cgagacgggc aatcctcggt
     1441 ctgaaggtgc gcagggcgga gacccgcccg cacccggcgt cgagtgccgc caccgccccg
     1501 ggcgtgcgcg cttcggcggc cgcgatcccg cgatcgagcg cctcgtggac caggcttccg
     1561 acggtcgggc tgatccccag cctgggcagc agggcgaagc gcccgggttc ggtcaccctc
     1621 accaggcggt
//
LOCUS       DATDDI010000590         1649 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_429172, whole genome shotgun sequence.
ACCESSION   DATDDI010000590 DATDDI010000000
VERSION     DATDDI010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429172"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(248..>1649)
                     /locus_tag="VIU37_08465"
     CDS             complement(248..>1649)
                     /locus_tag="VIU37_08465"
                     /inference="COORDINATES: protein motif:HMM:NF044955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014027.1"
                     /translation="LAIFFDLDPTLRHGQVQLYAGPGFEAAYLSNEERQSIFDNDMLP
                     YLRSADFDGALAIALQKIDAAATPEHAASLQTARQVNAVVGLVGAPIVLLALVGWAFF
                     HWRRFGKDPVYLDDPSILMPAPPPELTAAAGAMVMDGRTSRRALTTAMLDLASRGLLA
                     FRQEETGLLVHSKKLGIDVVPARGDADVEAQRARNARRPLGPAEELALRDLRSIGGSS
                     EGSYIEPDDVTRFGEKVAGFDRALEGHVVSRGWFAERPSKVVIAWSLRGVVAIVAGAI
                     ALVAGLSIPFSGLTVIGGAGIVGGVVVVAFAQGMPAVTMSGAMVRAMLAAYRRTLQKT
                     MAQARSMQQVVSEAKLDWLDTPDQVVVWATALGLQSEIEDVFKRSLEDLRPGHTAAVV
                     PWFPVWYQSSSGSSFLGAAAAGSGGSLFSNSGIPDIGGMMSTLGTIGNSPASSGGGGF
                     SGGGSGGGGGGAGGGF"
BASE COUNT          259 a          603 c          566 g          221 t
ORIGIN      
        1 atccagccgc aggccgtgcg attgcaccat atgcacgttc tgtcggccgc ggccggaggt
       61 gtccgcggac tctcttcgac cgcctgcatc agccgcacgt cagcgaccga gcgagtcgcc
      121 gagtgcctcg atccttgcgt catgcgcgcg ccagaggtcc acattggcca ggccgcgacc
      181 gtccgtgcag ttgacgcaag gctcgactca ttccttgcgc cgagcgcaac gcaacgtcaa
      241 tcaggcccta gaacccgcct ccggcgccgc cgccgccacc gcccgagccg ccacccgaga
      301 acccgccgcc gcccgacgag gcgggagagt tgccgatcgt gccgagcgtg gacatcatcc
      361 cgccgatgtc ggggatcccc gagttcgaga agagactccc gccgctgccg gccgcagccg
      421 cgccgaggaa cgacgacccg ctcgagctct ggtaccagac cgggaaccag ggcacgacgg
      481 ctgcggtgtg gccgggccgg aggtcttcca ggcttcgctt gaagacgtcc tcgatctcgg
      541 attgcaggcc gagggcggtg gcccagacga cgacctggtc cggggtatcg agccagtcca
      601 gcttcgcctc gctgaccacc tgctgcatcg accgcgcctg ggccatcgtc ttctggaggg
      661 ttcgacggta ggccgcgagc atcgcccgga ccatcgcccc ggacatcgtc accgcaggca
      721 tgccctgggc gaaggcgacc accacgaccc cgccgacgat cccggcgccg ccgatcaccg
      781 tcagtccgga gaaggggatg ctgagcccgg ccacgagcgc gatcgctccg gcgacgatcg
      841 cgaccacacc gcgcaggctc caggcgatga ccaccttgct cggccgctcc gcgaaccagc
      901 cgcgcgagac gacgtggccc tccagggccc gatcgaagcc cgccaccttc tcgccgaacc
      961 tggtcacgtc gtccggctcg atgtaggaac cctcggacga cccgccgatc gagcggagat
     1021 cgcgcagggc gagctcctcg gccggtccga gcggccgccg tgcgttccgc gcgcgctggg
     1081 cttcgacgtc cgcgtccccg cgggccggga ccacgtcgat cccgagcttc ttggagtgga
     1141 ccagcaggcc ggtctcctcc tggcggaacg cgaggaggcc gcgactggcc aggtcgagca
     1201 tcgcggtggt cagggcgcgt cgcgacgtcc ggccatccat caccatggcc ccggccgcgg
     1261 ccgtcagctc gggcggcggc gccggcatca ggatcgacgg gtcgtccagg tagaccgggt
     1321 ccttgccgaa gcggcgccag tggaagaacg cccagccaac gagggcgagc aggacgatcg
     1381 gcgcgccgac cagaccgacg accgcgttga cctggcgcgc cgtctggagg ctcgccgcgt
     1441 gctccggggt cgccgccgcg tcgatcttct ggagggcgat cgcgagcgcg ccgtcgaaat
     1501 cggccgagcg caggtacggc aacatgtcgt tgtcgaagat ggactggcgt tcctcgttcg
     1561 agaggtaggc cgcctcgaac cccggcccgg cgtacagctg gacctggccg tgccggaggg
     1621 tcggatcgag gtcgaagaag atcgcgagg
//
LOCUS       DATDDI010000591         3173 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_241898, whole genome shotgun sequence.
ACCESSION   DATDDI010000591 DATDDI010000000
VERSION     DATDDI010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241898"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VIU37_08470"
     CDS             <1..451
                     /locus_tag="VIU37_08470"
                     /inference="COORDINATES: protein motif:HMM:NF021610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2344 domain-containing protein"
                     /protein_id="HEY6014028.1"
                     /translation="PVWRVREALTRRLPHGWSLVDLHDVWLGAPALAGRVTGAVYRVT
                     LEAAGCPDAEAVGSAAAELLAAGELVRTRLKGGRSVAYDLRPLVAGISVAEPGPPVVL
                     RIETRIHPERGSGRPEEVVAALGDHLGQPIVVRSMVRERLILDDEPD"
     gene            607..1266
                     /gene="rplU"
                     /locus_tag="VIU37_08475"
     CDS             607..1266
                     /gene="rplU"
                     /locus_tag="VIU37_08475"
                     /inference="COORDINATES: protein motif:HMM:NF013025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEY6014029.1"
                     /translation="MYAVIETGGKQYRVEVGTELEVELLDVEPGKTITLERVLLVGDG
                     ADSSIGRPLVAGAEVSAEVVRQSRGEKLISFKYRPKARSRVKKGHRQELTVLRINDIT
                     FGGKSAAKVAKKAQDDAKTERERLEEAAVAQAAKDAELAAKLTAGAAKPEAKPKATPA
                     KTTAAKPKAAKETAAKATATKADAKPTEAPKRGRAKAPAADAAKPETPKRPRASKKDE
                     A"
     gene            1270..1545
                     /gene="rpmA"
                     /locus_tag="VIU37_08480"
     CDS             1270..1545
                     /gene="rpmA"
                     /locus_tag="VIU37_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002513859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEY6014030.1"
                     /translation="MAHKKAGSSSKNGRDSVGQRLGVKAGDGQLVNAGTIIVRQRGMT
                     FLAGPGTGLGRDYTVFATETGKVKFEHATKLKKRIRVEAVETTAPSA"
     gene            1619..1831
                     /gene="rpmE"
                     /locus_tag="VIU37_08485"
     CDS             1619..1831
                     /gene="rpmE"
                     /locus_tag="VIU37_08485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004811173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEY6014031.1"
                     /translation="MKPAIHPKYYQATVHCGSCGTEWTVGSTRPELRVDVCANCHPFF
                     TGKQTIIDTAGQVERFQKRLERQARS"
     gene            1928..2896
                     /locus_tag="VIU37_08490"
     CDS             1928..2896
                     /locus_tag="VIU37_08490"
                     /inference="COORDINATES: protein motif:HMM:NF018798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HEY6014032.1"
                     /translation="MPTFSYGGQALIEGVLMRGRDAVAVALRHPDGHIVYATERLDSG
                     FHGTRWSKWPFVRGLVVLYETLVMGTRWLVRSANVQAEEEGVELGRGAVALMLGMTLV
                     AGVGIFFLLPLFVASFTTGNIQNGLIQHLVEGLVRVGIFLGYLILIGRAPDIHRVFQY
                     HGAEHMTIHALEAADPLTVAKVRQYPTAHQRCGTEFLVVVILLSILAFSLVGRQEPLI
                     MVGSRVLLIPVIASVGYEILRFGARHRSNPILKVLLYPGLIVQMITTKQPSDDMIEVA
                     IVSMEQALEADGEPIPAGSGDFPREPMRIGPPAAAAAVPLDPPPGS"
     gene            2893..>3173
                     /locus_tag="VIU37_08495"
     CDS             2893..>3173
                     /locus_tag="VIU37_08495"
                     /inference="COORDINATES: protein motif:HMM:NF015427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PCRF domain-containing protein"
                     /protein_id="HEY6014033.1"
                     /translation="MSSLDAKLAEVTHQYDDLQAELARPEVSSDPSELRRLGRELSRL
                     EPAVAAFRRLEATRAELAGAREVRASTDADDELRQMARDEIDRLEADEAR"
BASE COUNT          509 a         1147 c         1101 g          416 t
ORIGIN      
        1 ccccgtgtgg cgcgttcggg aggcgctgac ccgccggctg ccgcacggct ggagcctggt
       61 cgatctccac gacgtgtggc tcggcgcgcc cgcgctggcc gggagggtga ccggtgcggt
      121 ctatcgggtc acgctcgagg cggccgggtg tcccgatgcc gaagcggtcg gctcggccgc
      181 ggccgagctg ctggcggccg gggagctggt ccggacgcgc ctcaagggcg gcaggtcggt
      241 ggcctacgac cttcgcccgt tggtggccgg catctcggtc gccgagccgg gcccacccgt
      301 cgtgcttcgg atcgagacgc ggatccatcc cgaacggggg tcgggccggc ccgaggaggt
      361 cgtcgcggcg ctgggcgacc atctcgggca gccgatcgtc gttcggtcca tggtgcgtga
      421 gcgcctgatc ctcgacgacg agccggactg acgccaccgg catcattccc cgtggcccgc
      481 gattgaccgg ttcacgctcc gagacgtaca atccccgatc tgcgactcgg cccgtccgag
      541 cgcatctccc tgtccgacgt cgcggtggtc gcgcgcggcc gccagcacga aagcccctga
      601 ggatccatgt acgcagtcat cgagaccggc ggaaagcagt atcgcgtcga ggtcgggacc
      661 gagctcgagg ttgagctgct cgacgtcgag cctggcaaga cgatcacgct cgagcgcgtc
      721 ctcctcgtcg gggacggcgc cgactcgtcg atcggcaggc ccctcgtcgc cggcgccgag
      781 gtcagtgccg aggtcgtgcg ccagtcgcgc ggcgagaagc tgatctcgtt caagtaccgg
      841 ccgaaggccc gtagtcgcgt caagaagggc caccgccagg agctcacggt cctgcgcatc
      901 aacgacatca cgttcggcgg caagagcgcg gcgaaggtgg ccaagaaggc ccaggacgac
      961 gccaagaccg agcgcgagcg gctcgaggaa gcggccgttg cccaggccgc gaaggacgcc
     1021 gagcttgccg ccaagctgac ggccggcgcc gccaagccgg aggccaagcc caaggccacc
     1081 ccggccaaga cgaccgccgc caagcccaag gccgccaagg agactgcggc gaaggccacc
     1141 gccacgaagg cggacgccaa gcccaccgag gccccgaagc gtggccgggc caaggccccg
     1201 gcggccgatg cggccaagcc cgagaccccc aagcgccccc gcgcttccaa gaaggacgag
     1261 gcataagcga tggcccacaa gaaagccgga tcgagctcga agaacgggcg cgacagcgtc
     1321 ggccagcgcc tcggcgtcaa ggccggcgac ggccagctcg tcaacgccgg aacgatcatc
     1381 gtccgccagc gcgggatgac cttcctggcc ggccccggca ccgggctcgg cagggattac
     1441 accgtgttcg cgacggagac cggcaaggtc aagttcgagc acgcgacgaa actcaagaag
     1501 cgcatccggg tcgaggcggt cgagacgacc gccccgagcg cctgacccac ccggacgagc
     1561 cggcgaccac cggctgggcg aagcgcccgg cacggacggc gtcggaggag agcctcccgt
     1621 gaagcccgcg atccatccca agtactacca ggccaccgtc cattgcggat cgtgcggcac
     1681 cgagtggacg gtcggttcca cccgccctga gctgcgcgtg gacgtctgcg ccaactgcca
     1741 cccgttcttc accggcaagc agacgatcat cgacacggcc ggccaggtcg agcgcttcca
     1801 gaagcggctc gagcgccagg ctcgcagctg accgacatcg tccgcacgac cggcggggcc
     1861 cgaacacggc ccgacgagat gacgcgcgca catcgcctcg ccgaacgcgc ccggtagact
     1921 tcgctccatg cccaccttca gctacggcgg ccaggccctc atcgagggcg tcctgatgcg
     1981 cggccgcgac gccgtcgccg tcgccctccg ccatccggac ggccacatcg tgtatgccac
     2041 cgagcggctg gattcggggt tccacgggac gcgctggtcg aaatggccgt tcgtccgcgg
     2101 cctggtcgtc ctgtacgaga ccctcgtgat gggcacccgc tggctggtgc ggagcgccaa
     2161 cgtccaggcc gaggaggagg gggtcgagct cggccgcggc gcggtggcgc tgatgctcgg
     2221 gatgacgctg gtcgccgggg tgggcatctt cttcctgctc cccctgttcg tggcgtcgtt
     2281 cacgacgggc aacatccaga acggactgat ccagcacctg gtggagggac tggtccgggt
     2341 cggcatcttc ctcggctacc tgatcctgat cgggcgggcg ccggacatcc atcgggtctt
     2401 ccagtaccac ggcgccgagc acatgacgat ccacgcgctc gaagccgcgg atccgctcac
     2461 ggtcgcgaag gtgcgccagt acccgaccgc gcaccagcgt tgcggcaccg agttcctcgt
     2521 cgtcgtgatc ctgctgtcga tcctcgcgtt ctcactcgtc ggacggcagg agccgctcat
     2581 catggtcggc agccgggtgc tgctcatccc ggtcatcgcg tcggtgggct acgagatcct
     2641 gcggttcggc gcgcggcacc gctcgaaccc catcctcaag gtgctgctgt atcccgggct
     2701 gatcgtccag atgatcacca ccaagcagcc gagcgacgac atgatcgagg tcgcgatcgt
     2761 ctccatggag caggcgctcg aggccgacgg cgaaccgatc ccggccgggt ccggggactt
     2821 cccgcgtgag ccgatgcgaa tcggcccccc ggcagcggcc gccgccgtac cgctcgaccc
     2881 gccaccgggg tcgtgagcag cctcgacgcc aagctggcag aggtcaccca ccaatacgac
     2941 gatctccagg ccgagctcgc acgccccgag gtctccagcg acccgtcgga gctccggcgc
     3001 ctgggtcgcg agctgtcccg gctcgagccg gccgtcgccg cgttccggcg cctcgaggcg
     3061 acgcgggccg agctcgccgg cgctcgcgag gtgcgcgcct cgaccgacgc ggacgacgag
     3121 ctgcggcaga tggcccgcga cgagatcgac cggctcgaag ccgacgaggc gcg
//
LOCUS       DATDDI010000592         1899 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_387628, whole genome shotgun sequence.
ACCESSION   DATDDI010000592 DATDDI010000000
VERSION     DATDDI010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387628"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VIU37_08500"
     CDS             complement(<1..290)
                     /locus_tag="VIU37_08500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014034.1"
                     /translation="MNGNDLDLRLVPVRPLICAPVDVVFRIAPGDRPVVATGDSVVVG
                     APIAQRLRDARLDELTIPATATPRPGRRWTAPSDTRDGQAAGGEYVFGWRGR"
     gene            complement(287..>1899)
                     /locus_tag="VIU37_08505"
     CDS             complement(287..>1899)
                     /locus_tag="VIU37_08505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014035.1"
                     /translation="GRVTSEPRAFLTTDTGAATIAVALVGRVAGRWRLVGSLALPAGA
                     DAEAAATVLLDRVRSADADLASTLGLTGVRPSDLPSVDVVSRPARRLAVVAGSERALE
                     PLVAAAARSGWRPTSASPETTDPLSMTAMLLDASIEGILAGAGDPPAADERRALGELG
                     ALLAAAAERRPELTVVLAGGMADQLAAFGDASARHAPVVVAAAAAAGERGSELREALL
                     DLALAGDDARRALGSAALSLAEILDRRVDVVEIGFDGGTRAGAWPAAGATSSGVDLAV
                     VATAGLAPSDPDDAVVDRVATWSSAAGDRHRLRDRLRELRIAPWADVAGEGVELRLAA
                     ARAALGCLAERTPDWFGRPPADLVVATGGVWSVASGPAVVLALIDVLRRSGASQYALD
                     HARLLAPLGSIADPVERRAVMTDLLDDLLAPLGSVVTPAGLRPGRSVGTLHLHGADGT
                     RDVELRPGGLSVVDLPPGADATAELQFHDTVRLGGRGRRFAVDVTGGLGGLLLDLRDV
                     PLELPDRADLRAELLESWQAAVSPVREP"
BASE COUNT          241 a          742 c          729 g          187 t
ORIGIN      
        1 caccggccgc gccacccgaa cacgtactca ccgccggccg cctgaccgtc gcgtgtgtcg
       61 gacggcgcgg tccagcggcg tccgggacgt ggcgttgcgg tcgcggggat cgtcagctcg
      121 tcgagccgcg cgtcccgcag ccgctgggcg atcggcgccc cgaccacgac cgagtctccc
      181 gtcgcgacca cgggccggtc tcccggggcg atccggaaca cgacgtccac gggcgcgcag
      241 atcagtggcc ggaccgggac gaggcggagg tccaggtcgt tgccgttcat ggctcgcgca
      301 ccggcgagac cgcggcctgc cagctctcga ggagctccgc ccgcaggtcg gcccggtcgg
      361 gcagctcgag cgggacgtcg cgaaggtcga gcagcagccc gccgagcccg cccgtcacgt
      421 cgacggcgaa ccgccggccg cggccaccga gccggacggt gtcgtggaac tggagctcgg
      481 ccgtcgcgtc cgctcccggc ggcaggtcga ccaccgacag cccgcccggt cgcagctcca
      541 cgtcccgggt gccgtccgcg ccgtggagat gcagcgtgcc aacgctccgc ccgggccgca
      601 ggccggccgg cgtgacgacc gacccgagcg gcgcgagcag gtcgtcgagc agatcggtca
      661 tgaccgcccg ccgctcaacc gggtcggcga tcgaaccgag cggcgccagc aatcgggcgt
      721 ggtcgagcgc gtactggctg gcgccggacc ggcggaggac gtcgatgagg gcgagcacca
      781 cggcaggccc ggaggcgacg gaccagaccc cgccggttgc gacgacgagg tcggccggtg
      841 gacggccgaa ccagtccggc gtccgctcgg ccaggcagcc gagcgccgcg cgggccgccg
      901 cgagccgcag ctcgacgccc tcgccggcga cgtccgccca gggggcgatc cgcagctcgc
      961 ggaggcggtc ccgcagccgg tgccgatcgc cggcggcgct cgaccaggtc gccacgcggt
     1021 cgacgacggc gtcgtcgggg tccgacggcg cgagcccggc ggtggcgacc accgcaaggt
     1081 cgacgcccga gctcgtggcg ccggccgccg gccaggcccc ggcccgggtg ccgccatcga
     1141 agccgatctc gaccacgtcc acccgccggt cgaggatctc ggccaggctc agggcggccg
     1201 atccgagcgc acgccgcgcg tcgtcgcccg ccagggcgag gtcgagcagc gcctcgcgaa
     1261 gctccgaccc gcgttcgccg gcggccgccg cggccgcgac gacgacgggt gcgtgtcgcg
     1321 ccgacgcgtc gccgaacgcc gccagctggt cggccatccc gccggccagg accaccgtca
     1381 gctcgggccg tcgctcggcg gcggccgcca ggagggcgcc cagctcgccg agcgcgcgac
     1441 gctcgtcggc cgcgggtgga tcgcctgccc cggccaggat cccctcgatg gaggcgtcga
     1501 gcagcatggc cgtcatcgag agcgggtcgg tcgtctcggg actcgcggag gtcggccgcc
     1561 agccgctccg ggcagccgcc gcgacgagcg gctcgagcgc gcgctccgag cccgcgacga
     1621 cggccaggcg acgggccggg cggctgacca cgtccacgct gggcaggtcg gacggccgga
     1681 cgccggtcag gcccagcgtc gacgcgagat ccgcgtcggc cgatcggacg cggtcgagga
     1741 ggaccgttgc ggcggcttcg gcgtccgccc cggccggaag cgccagcgac ccgacgagcc
     1801 gccagcgtcc ggccacccgg ccgaccagcg ccaccgcgat cgtggccgcg ccggtgtccg
     1861 tggtgagaaa cgctcgtggc tcgcttgtca cgcggccat
//
LOCUS       DATDDI010000593         2602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_449546, whole genome shotgun sequence.
ACCESSION   DATDDI010000593 DATDDI010000000
VERSION     DATDDI010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449546"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VIU37_08510"
     CDS             <1..257
                     /locus_tag="VIU37_08510"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEY6014036.1"
                     /translation="TGWFGSNLTMPIINVPEVAILTMEAITKRAVVRETPEGDVIAIR
                     PMMNMVLAIDHRANDGAGAADFLRAIKGSLEAIGPDASVY"
     gene            379..1329
                     /gene="lipA"
                     /locus_tag="VIU37_08515"
     CDS             379..1329
                     /gene="lipA"
                     /locus_tag="VIU37_08515"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010331747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEY6014037.1"
                     /translation="MGGSVTPMRRHPDWIRAKMPSGENYHDLKGLLRGLGLNTVCEEA
                     GCPNIGECWDQRTATIMILGDTCTRACGFCAVKTGRPTWFDDDEPRRVAEALSGLGLE
                     HVVVTSVARDDLPDGGASIFAETIRQVRATSPGMGIEVLIPDFNGETTPLRSVMEARP
                     DILNHNLETVRRLQKPVRKRARWDRTLGVLRNAKSMANEIGYAVHTKSSLMVGLGEER
                     DELREACAALREVDCDILTIGQYLRPSLQHLPLERYYHPDEFAAMKAEALAMGFKHVE
                     SGPLVRSSYHARDQVPGAELRRLRRQATIDAEGRVVPLAG"
     gene            1345..>2602
                     /locus_tag="VIU37_08520"
     CDS             1345..>2602
                     /locus_tag="VIU37_08520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014038.1"
                     /translation="MSVEFEPVKLGPRRRRVDPVVVLALAVAIGLVAAIVKPWNSGTS
                     AEDVGAPDIAAASSGALDSTPAPSPAEPTPSPDSLRTDQPASTASYASWDRVRAAVRP
                     HGTWGIRAIVGRPSALLAPAGDLRYEEVWSALPATTGSAPTIDIEPNDRTVVAIGITF
                     PPSHTPIDARVWLVRPDRLDWMDTQALEPSPSGGGFLYRVIGDDGSIQNWPAGRYRMD
                     ILVDGSVRRVGFTLPNRFEIVPDGAAPPPLQADLVDPAGSALPGYPVGPFVTASGDSI
                     PLRVEGGPPLTETEAWLNVDPGTGRAPRSRVATVFVRSATGLGVILPAGATVRRSEAS
                     RLAPEPLRGEPLLVADDASHGPQAAHVLYRPPGGGAWTPGVYRISVTWDDPAGRHARS
                     WHVELRPGPVGELPQLLLAARGFARYA"
BASE COUNT          375 a          955 c          923 g          349 t
ORIGIN      
        1 acaccggctg gttcggctcg aacctgacga tgccgatcat caacgtcccc gaggtcgcga
       61 tcctgaccat ggaggcgatc accaagcggg cggtcgtccg ggagacaccg gaaggcgacg
      121 tgatcgcgat ccgtccgatg atgaacatgg tgctcgcgat cgaccaccgc gccaacgacg
      181 gcgcgggcgc ggccgacttc ctgcgggcga tcaaaggctc gctcgaggcg atcgggccgg
      241 acgcgtccgt ctactgagcg gccgacggcc ctcaccaccg acccgacgta cactcccgac
      301 atggcgcgcg agctcccggt cttcacccca cccggaacgg gcgcccacca cgccccggtc
      361 gcgcccgaca cgatcgcgat gggcggctcc gtcacgccga tgcgccgcca tcccgactgg
      421 atccgggcga agatgccgtc cggcgagaac taccacgacc tcaagggact gctgcgcgga
      481 ctaggtctga acaccgtctg cgaggaggcc ggctgcccga acatcgggga atgctgggac
      541 cagcgcaccg ccacgatcat gatcctgggc gatacctgca cccgggcgtg cgggttctgc
      601 gcggtcaaga ccggccggcc gacctggttc gacgacgacg agccgcgccg cgtggccgag
      661 gcgctcagcg ggctcggcct ggagcacgtg gtcgtcacca gcgtcgctcg cgacgacctc
      721 ccggacggcg gcgcgagcat cttcgccgag accatccgcc aggtccgcgc cacctccccg
      781 gggatgggga tcgaggtcct gatcccggac ttcaacggcg agacgacgcc gctgcgcagc
      841 gtgatggagg cccgcccgga catcctcaac cacaatctcg agacggtccg gcggctccag
      901 aagccggtgc gcaagcgggc gcgctgggat cgcacgctcg gggtgctgcg gaacgcgaaa
      961 tcgatggcga acgagatcgg ctatgcggtg cacaccaaga gctcgctgat ggtcggcctc
     1021 ggcgaggagc gcgacgagct gcgtgaggcc tgcgcggccc tccgcgaggt cgactgcgat
     1081 atcctcacga tcggccagta cctgcggccg tcgctccagc acctgccgct cgagcgctac
     1141 taccacccgg acgagttcgc cgcgatgaag gccgaggcgc tggccatggg cttcaagcac
     1201 gtcgagtccg ggccgctggt ccgctcgagc taccacgccc gcgaccaggt cccgggtgcc
     1261 gaactcaggc ggctccggcg acaggccacg atcgacgcgg agggccgggt cgtcccgctc
     1321 gcgggctgaa ccgctgagtc gcccgtgagc gtcgagttcg agccggtcaa gctcggtccg
     1381 aggcgacgac gggtggaccc ggtggtggtc ctcgcgctcg ccgtcgcgat cgggctggtg
     1441 gccgcgatcg tcaagccctg gaacagcggc acgtcggccg aggacgtcgg tgccccggat
     1501 atcgccgcag catcttcggg cgcgctcgac tcgacgccgg cgccgtcgcc ggccgagccc
     1561 acgccgtcgc cggacagcct ccggaccgac cagccggcga gcaccgcctc gtacgccagc
     1621 tgggaccgcg tccgcgcggc cgtccgtccg cacggcacct ggggaatccg cgcaatcgtc
     1681 gggcggccgt ccgctctgct ggcgcccgcc ggcgacctgc gctacgagga ggtctggagc
     1741 gcgctgccgg ccacgaccgg cagcgctcct acgatcgaca tcgagcccaa cgaccggacc
     1801 gtggtcgcga tcgggatcac cttcccgccg tcgcatacgc ccatcgacgc gcgcgtctgg
     1861 ctcgttcgcc cggaccggct cgactggatg gacacccagg cgctcgagcc cagcccgtcg
     1921 ggcggcggct tcctgtaccg cgtgatcggg gacgacggga gcatccagaa ctggccggcc
     1981 ggccggtacc ggatggacat cctggtcgac ggctcggtcc ggcgggtcgg gttcacgctg
     2041 ccgaatcggt tcgagatcgt gccggacggg gccgcgcccc cgccgctaca ggccgatctc
     2101 gtcgatccgg ccgggagcgc actgcccggc tatccggtcg gcccgttcgt caccgccagc
     2161 ggcgactcga tcccgttgcg ggtggagggc ggtccgccgc tgaccgagac ggaggcgtgg
     2221 ttgaacgtcg atcccgggac cgggcgggcg ccacgatcgc gcgtcgcgac ggtcttcgtg
     2281 cgatcggcga ccgggctcgg ggtgatcctc ccggcgggag cgacggttcg tcgatcggag
     2341 gcaagccgcc tggcgccgga gccactgcga ggcgaacccc tgctcgtcgc ggacgacgcc
     2401 tcgcacgggc cgcaggcggc ccacgtgctc tatcggccgc ccggtggcgg cgcctggacc
     2461 ccgggcgtct accgcatctc ggtcacctgg gacgatccgg cggggcggca tgctcgtagc
     2521 tggcacgtcg agctccgccc ggggccggtc ggcgagttgc cgcagctcct cctggcggcc
     2581 cgtggtttcg cccgctatgc cg
//
LOCUS       DATDDI010000594         2348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_741102, whole genome shotgun sequence.
ACCESSION   DATDDI010000594 DATDDI010000000
VERSION     DATDDI010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741102"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VIU37_08525"
     CDS             <1..336
                     /locus_tag="VIU37_08525"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEY6014039.1"
                     /translation="AGERSRYLVVYPFTKSTDWFLLSKEARQGVMNEHMRVGHDYPTV
                     RQALAYSFGLDSQDFVVAYETDDLVAFGDLVRALRATESRRSTVNDTPILLGIHRPLS
                     EILELLGAG"
     gene            336..1658
                     /locus_tag="VIU37_08530"
     CDS             336..1658
                     /locus_tag="VIU37_08530"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: protein motif:HMM:NF000818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEY6014040.1"
                     /translation="MTETAAVGSGVAAGRRTADLVARAERLFPGGVNSPVRAYRAVGR
                     PPIVLERGDGAYVWDADGRRYLDYVGAWGPAILGHAAPTVMEAVRRATADGLALGATH
                     PLEIELGEAIQRAMPSMERLRFTSSGTEAVMSAMRLARAATGRDLVVKFAGAYHGHSD
                     GLLVDAGSGVATQAIAGSAGVPPAVAATAMVLPFNDATAVTLAFARHGGRIAAVVLEP
                     VIANVGVIAPEPGFLELLRELTRADGALLVFDEVITGFRVGPGGAQARFGIRPDLTTL
                     GKIIGGGMPIGAYGGRADLMELVAPAGPVYQAGTLSGHPLSMAAGIATLAELRPERYV
                     ALEAAAADLAQGLMAAAAAAGRVVSVARLGPLLTVFFRPDLPLDAADALASDRDAYAR
                     FFGAMLDRGILLPPSQFEAWFLSMAHGPAEIAATLAAARRAFEEDPRD"
     gene            1651..>2348
                     /locus_tag="VIU37_08535"
     CDS             1651..>2348
                     /locus_tag="VIU37_08535"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HEY6014041.1"
                     /translation="MTDRFLRACRLEPVDATPVWFMRQAGRSFSAYRALRERYAILEL
                     AKTPDLCAEVTLMPVRELGVDAAVLFADIMLPLEPMGVGLRIEPEVGPIIDRPIRSAA
                     EVAALRPFEPEGVGFVFEAIRLVRRELNGTAGLIGFAGAPFTLACYLIEGRPSRDYAT
                     AKAFMYREPAAWHDLMGRLATMTAAALRAQVTAGADVVQLFDSWVGGLGPADYRTYVQ
                     PHVRRIFDSLGGTPA"
BASE COUNT          277 a          854 c          872 g          345 t
ORIGIN      
        1 gccggggagc ggtcgcgcta cctcgtggtc tacccgttca ccaagtcgac cgactggttc
       61 ctcctctcga aggaggcgcg ccagggcgtg atgaacgagc acatgcgggt cggccacgac
      121 tacccgacgg tgcgccaggc actggcctat tcgttcgggc tggattcgca ggacttcgtg
      181 gtcgcctacg agaccgacga cctggtcgcc ttcggcgacc tcgtccgggc gctccgtgcg
      241 accgagagcc ggcgctcgac ggtgaacgac acgccgatcc tcctggggat ccaccggccg
      301 ctgagcgaga tcctcgagct gctgggagcc ggctgatgac ggagaccgcc gcggtcgggt
      361 ccggcgtcgc cgcggggcgt cgcacggccg acctcgtcgc ccgtgccgag cgcctgttcc
      421 cgggtggcgt caacagcccg gtccgcgcgt accgtgcggt cgggcggccg ccgatcgtgc
      481 tcgagcgtgg cgacggcgcg tacgtctggg acgccgacgg ccggcgatac ctggactacg
      541 tgggcgcgtg ggggccggcg atcctgggcc acgcagcccc gaccgtgatg gaggcggtgc
      601 gccgggcgac ggcggacggg ctggcgctcg gtgccaccca cccgctcgag atcgagctgg
      661 gcgaggcgat ccagcgggcg atgccgtcga tggagcggct ccggttcacc tcgtccggga
      721 ccgaggccgt gatgagcgcg atgcggctgg cccgggccgc caccgggcgc gacctcgtcg
      781 tgaagttcgc gggcgcctac cacgggcact cggacgggct gctcgtcgac gcaggctcgg
      841 gcgtcgccac ccaggcgatc gccggcagcg ccggcgtgcc gccggccgtg gccgcgacgg
      901 ccatggtcct gccgttcaac gacgccaccg cggtcacgct ggcgttcgcc cggcatggcg
      961 gccggatcgc cgccgtcgtg ctcgaaccgg tgatcgcgaa cgtcggggtg atcgcacccg
     1021 aacccgggtt cctcgagctg ctccgcgagc tgacccgcgc cgacggcgcc ctgctcgtgt
     1081 tcgacgaggt catcaccggg ttccgcgtcg ggccgggtgg cgcccaggcg cggttcggga
     1141 tccggccgga cctcaccacg ctcggcaaga tcatcggcgg ggggatgccg atcggcgcgt
     1201 acggcggtcg tgccgacctc atggagctgg tcgcaccggc cgggccggtc taccaggccg
     1261 gcacgctgtc gggccacccg ttgtcgatgg cggccgggat cgcgacgctg gccgagctcc
     1321 ggcccgagcg atacgtcgca ctcgaggcgg cggcagcgga ccttgcgcag ggtctcatgg
     1381 ccgccgcagc ggcggcgggc cgagtggtct cggtcgcccg tctcgggccg ctcctgacgg
     1441 tcttcttccg gccggacctg ccgctcgacg cggccgacgc gctcgcctcg gaccgtgacg
     1501 cctacgctcg cttcttcggc gcgatgctcg accgcgggat cctgctgccg ccgtcgcagt
     1561 tcgaggcctg gttcctgtcc atggcgcacg gcccggccga gatcgcggcg acgctcgccg
     1621 ccgcacgccg ggcattcgag gaggatcccc gtgactgatc ggttcctgcg tgcctgccgg
     1681 ctggagccgg tggacgccac gcccgtctgg ttcatgcgcc aggcgggccg ctcgttcagc
     1741 gcctaccggg cgctccgcga gcggtacgcg atcctcgagc tggcgaagac gccggacctg
     1801 tgcgccgagg tgaccctgat gccggtccgc gagctcggcg tggacgcggc cgtgctgttc
     1861 gccgacatca tgctgccgct cgagccgatg ggcgtgggtc tccggatcga gcccgaggtc
     1921 ggtccgatca tcgaccgccc gatccgctcg gcggcggagg tcgccgccct gcggccgttc
     1981 gaacccgagg gggtcgggtt cgtgttcgag gccatccggc tcgtccggcg agagctgaac
     2041 ggcaccgccg gcctcatcgg cttcgccggg gcgccgttca ccctcgcctg ctacctgatc
     2101 gagggccggc cgtcgcgcga ctacgcgacc gcgaaggcat tcatgtaccg cgagcccgcc
     2161 gcgtggcacg acctcatggg ccggctcgcg acgatgaccg cggcggccct ccgggcacag
     2221 gtcacggcag gcgccgatgt cgtccagctg ttcgacagct gggtcggcgg actgggaccg
     2281 gccgactacc ggacctacgt ccagccgcac gtccggcgga tcttcgattc gctcggcggg
     2341 acgccggc
//
LOCUS       DATDDI010000595         1566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_512402, whole genome shotgun sequence.
ACCESSION   DATDDI010000595 DATDDI010000000
VERSION     DATDDI010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512402"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /gene="flgM"
                     /locus_tag="VIU37_08540"
     CDS             <1..302
                     /gene="flgM"
                     /locus_tag="VIU37_08540"
                     /inference="COORDINATES: protein motif:HMM:TIGR03824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEY6014042.1"
                     /translation="PDTKDLREVLRSGGNGRAQRADAVQRTPGNPGALPPGRDAEVRE
                     LVDAVRALPDVRRDKVAAIRKAIESGTYVVDSLRVAGKMIDEIRASRRVDTDWRS"
     gene            316..510
                     /locus_tag="VIU37_08545"
     CDS             316..510
                     /locus_tag="VIU37_08545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014043.1"
                     /translation="MAGLNFHLNDMTGLYGRILGIKSPDRDAGPAEATGRAVLSGHAK
                     RRRILEEARSAVLDRIRRTR"
     gene            600..>1566
                     /locus_tag="VIU37_08550"
     CDS             600..>1566
                     /locus_tag="VIU37_08550"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6014044.1"
                     /translation="MPATGDRGKVLIIEDDPLVRDMLSQTLSGLGGYETDIAADGQDG
                     LEKIREADFDIVFTDLNMPRLNGMEFLKRSRALRPSTPVVVITGVSEMEIAVNAMRAG
                     ATDFIPKPFRVDKLIATAERILGEKRLLGRFVDGARSEESLERLNAELFKRLQEIVAL
                     HTLSTEIDGQLDNRDIYGRIAGMAARLLAVNEASFGIIEEGRLDSRSAVGAPPPAVPV
                     AGTFLEEVAGEARYRVADVGDPNPVTGTPLASQYLAIPLVAGNETFGILSLSNKADGT
                     AFSREDIYLAVDFARKTASKIENNALYEVFFNNLVDTLKSLIATVE"
BASE COUNT          272 a          530 c          547 g          217 t
ORIGIN      
        1 cgcctgacac aaaggacttg cgagaagtct tgcgatcagg cggcaacggc cgtgcccagc
       61 gggcggacgc cgtgcagcgg acgccgggga acccgggcgc cctgccgccg ggacgcgacg
      121 cggaagtccg tgagcttgtc gatgccgtgc gcgccctgcc ggacgtgagg cgcgacaagg
      181 tggcggccat ccggaaggcg atcgagtccg gcacgtacgt ggtggattcg ctcagggtcg
      241 cggggaagat gatcgacgag atccgggcaa gccggcgcgt ggatacggac tggcggtcgt
      301 gacggggccg ggcgcatggc gggactcaac ttccacctga acgacatgac cggcctgtac
      361 ggccggattc tcgggatcaa gtcgcccgat cgcgacgccg gtcccgcgga ggccacgggc
      421 cgggccgtcc tctccggcca cgcgaagcgc cgccggatcc tcgaagaggc caggagcgcc
      481 gtcctggacc ggatcaggcg cacccggtag gctccaatcc caggctcagg attcgaacgc
      541 ccggcgccga caggtcatga gaagcgtgcg cgggccgatc agcgagggga ccatcgacga
      601 tgccggcgac cggggacagg gggaaggttc tgatcatcga ggacgatccc ctcgtccgcg
      661 acatgctgtc gcagaccttg tccgggctgg gcggctacga gaccgacatc gccgccgacg
      721 ggcaggacgg gctcgagaag atccgcgaag cggacttcga catcgtcttc accgacctca
      781 acatgccccg cctgaacggc atggagttcc tgaaacggag ccgggcgctc cggccgtcga
      841 cccccgtcgt cgtgatcacc ggcgtctccg agatggagat cgccgtcaac gcgatgcgcg
      901 cgggggcgac cgacttcatc ccgaagccgt tccgggtcga caagctcatc gccacggcgg
      961 agcggatcct cggcgagaag aggctcctgg ggcggttcgt ggacggcgcg cggtccgagg
     1021 agtccctgga gcgcctgaac gcggagctct tcaagcgcct ccaggagatc gtcgccctcc
     1081 acacgctgag cacggaaatc gacgggcagc tcgacaacag ggacatttac ggccggatcg
     1141 ccgggatggc ggccaggctc ctcgccgtga acgaggcgtc gttcgggatc atcgaggaag
     1201 gccgtctcga ctcccgctcc gccgtcggcg cgccgccgcc ggcggtcccg gtcgccggca
     1261 ccttcctcga ggaggtcgcc ggggaggccc gctaccgcgt cgccgacgtg ggcgacccca
     1321 acccggtcac gggcacgccg ctggcaagcc agtatctcgc gattccgctc gtcgccggca
     1381 acgagacgtt cggtatcctg tccctgtcga acaaggccga cggcaccgcg ttctcgcggg
     1441 aggacatcta cctcgcggtc gatttcgcca ggaagaccgc ctcgaagatc gagaataacg
     1501 cgctctacga ggtgttcttc aacaacctcg tggacacgct caagtccctg atcgccaccg
     1561 tcgagg
//
LOCUS       DATDDI010000596         4430 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_179545, whole genome shotgun sequence.
ACCESSION   DATDDI010000596 DATDDI010000000
VERSION     DATDDI010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4430
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179545"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1167)
                     /locus_tag="VIU37_08555"
     CDS             complement(<1..1167)
                     /locus_tag="VIU37_08555"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014045.1"
                     /translation="MTSRQRWTLVTAVIGSGSVFLDGTIVNVALPRIGRELPATIVAV
                     LEGQAYVVSGYLAVLAALLILAGALSDHYGRKRVYAIGLGGFAVTSALCGLSPSLEWL
                     ILFRLVQGAAGALLVPGALSLITQTFQGAERGRAFGIWAASTSALTVLGPIVGGLIVD
                     TIGWRFAFLVNVPLLALALWVAVRYVAESRNDEASGRFDWLGAGVAALAVGGLAFGLI
                     RGQAQAWADGAAWAAIAIGAVALVVFPILMARRPNPLVPLGLFRQRAFATINLATFFI
                     YGALYVTISYQALVFQNTLGYTALAAGAIGVPTGVLLSVLSTRVGTLAGRLGARRFLV
                     AGPLLMATAMLWYARLPADSEAWKAAFEHPASLIPPLDTWVDVVPAVLLFGVGIS"
     gene            1227..1934
                     /locus_tag="VIU37_08560"
     CDS             1227..1934
                     /locus_tag="VIU37_08560"
                     /inference="COORDINATES: protein motif:HMM:NF015534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Type 1 glutamine amidotransferase-like
                     domain-containing protein"
                     /protein_id="HEY6014046.1"
                     /translation="MPGPVALIGAGEFLPGMAEFDAGLLLATGRARPRVAILPTASYP
                     DGEDVFAGWAAQGVAHFGSLGAEVEPVLVRDRAGADDAASAQALGEADLIYLSGGKPG
                     YLMGALADTAVGRALLAAHLRGAVLAGCSAGAMVLAAHAFDFRIRFLPWPLRWRHGFE
                     LVPGALVVPHYDAWPEPLSAVIALQAPRGSVVLGIDEETALVGREGAWRVHGRSRVTL
                     WRGRHRERYHAGESFRL"
     gene            complement(1961..2134)
                     /locus_tag="VIU37_08565"
     CDS             complement(1961..2134)
                     /locus_tag="VIU37_08565"
                     /inference="COORDINATES: protein motif:HMM:TIGR04272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CxxC-x17-CxxC domain-containing protein"
                     /protein_id="HEY6014047.1"
                     /translation="MRDIGGPRGYERSDDRPAREYFAVICSSCGNQAQVPFKPRMDRP
                     VYCSDCFRTVKPG"
     gene            2636..3805
                     /locus_tag="VIU37_08570"
     CDS             2636..3805
                     /locus_tag="VIU37_08570"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="HEY6014048.1"
                     /translation="MLRLIHTADVHLGARHDDLGEQAAAQRERQFAAFKAAVDLALTE
                     KVDLLLIAGDLFDSNVQPRRSVERVAAELKRLAGARIRTVIIPGTHDVYDKASIYRAY
                     DLPALAGNGPSDDLVTVLDPDHPSVHLATCDVVVFGPVFATKRAPHSPLRDLDASRDA
                     TAATWRIGMVHGAIAIPGKTDRDEVVITTEEIAATHLDYLALGHWHSAQSGRAGTVTY
                     AYSGAPEAVALDQDRAGKVLLVELDERNGARTVKVEERQVGRTRFEKREIDAAAVASQ
                     PALVESLAAAADPDLVLDVRLVGVRPDELDLDLDEVEGSLAPSFLKVRVRDASLPALT
                     DGPLPSPDTIAGAFIRDLEARIAELEAAGSAAEAAEQRDALRLGRLLLAGHEVSL"
     gene            3802..>4430
                     /locus_tag="VIU37_08575"
     CDS             3802..>4430
                     /locus_tag="VIU37_08575"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6014049.1"
                     /translation="MRVRRLSARDFRRYRELDIAFAPGLTVVRGPNEAGKSTVQRALE
                     LVLTRRATSTAAEVEAMRPWDAPAEARSVISIEFEQDEGDERKTGTVEKTFAGGKGTV
                     RLDYDGQAIADPTLADQVLAELTGIPTEAFFRSTASVHHFEISDLARDESALRDRLQA
                     SISGADRGTSRARRKLDRALHDLTTKGERNPGRLKVADQAVAQARAAVE"
BASE COUNT          660 a         1607 c         1610 g          553 t
ORIGIN      
        1 cgagatgccg accccgaaga gcaggacggc cgggaccacg tcgacccagg tgtcgagcgg
       61 cgggatgagg ctcgcgggat gctcgaaggc ggccttccag gcctccgaat cggccggcag
      121 ccgggcgtac cagagcatgg cggtcgccat cagcagcggt ccggcgacca ggaagcggcg
      181 ggcgcccagc cgtcccgcga gcgtgccgac ccgggtcgac aggaccgaca gcagcacgcc
      241 ggtcgggaca ccgatcgcgc ccgccgccag cgcggtgtag cccagcgtgt tctggaagac
      301 gagggcctgg tagctgatcg tcacgtacag cgcgccgtag atgaagaacg tcgcgaggtt
      361 gatcgtggcg aacgcccgct ggcggaacag gccgagcggg acgagcgggt tcggacggcg
      421 ggccatcagg atcgggaaga cgacgagcgc gaccgcgccg atcgcgatcg ccgcccacgc
      481 cgcgccatcg gcccacgcct gcgcctggcc ccggatcaac ccgaaggcga gcccgccgac
      541 ggccagcgcg gcgaccccgg cgcccagcca gtcgaaccgc ccggatgcct cgtcgttgcg
      601 cgattcggcg acgtaccgga cggccaccca gagggccagc gccaggagcg gcacgttgac
      661 caggaacgcg aaccgccagc cgatcgtgtc gacgatcagg ccgccgacga tcggaccgag
      721 caccgtcagg gccgacgtcg aggccgccca gatgccaaag gcccggccgc gttccgcgcc
      781 ctggaacgtc tgggtgatga gcgacagcgc ccccggcacc agcagcgcgc cggccgcccc
      841 ctggaccagc cggaacagga tcagccactc gagcgacggc gacaggccac acagggccga
      901 cgtgacggcg aagccgccca gcccgatcgc gtagacacgc ttgcgtccgt agtgatcgga
      961 cagggcgccg gccaggatca gcagcgcggc gagcacggcg agatagccgc tgaccacgta
     1021 cgcctggccc tcgagcacgg ccacgatcgt ggccgggagc tcacggccga tcctcggaag
     1081 cgccacgttg acgatggtgc cgtcgaggaa caccgatccc gatccgatca cggccgtgac
     1141 cagggtccag cgctgtcgtg aggtcatgcc gggcagtgtc gcagcggcgc gggggtcggg
     1201 gcaagcgtcc gggtagactc accggcgtgc ccggacctgt ggcgctcatc ggcgccggcg
     1261 aattcctccc cggcatggcc gagttcgatg ccggcctgct cctggcgacc ggccgtgccc
     1321 gtccgcgcgt ggcgatcctg ccgaccgcct cgtaccccga cggcgaggac gtcttcgccg
     1381 gctgggccgc ccagggcgtg gcgcacttcg ggagcctcgg cgcggaggtg gagccggtcc
     1441 tcgtccgcga ccgggccggc gcggacgatg ccgcctcggc ccaggcgctc ggcgaggccg
     1501 acctgatcta cctgtccggt ggcaagccgg ggtacctgat gggcgccctg gccgacacgg
     1561 cggtcggacg tgcgctgctg gcggcccacc tgcgcggtgc ggtgctcgcc ggctgctcgg
     1621 ccggcgcgat ggtcctcgcc gcccacgcat tcgacttccg gatccggttc ctgccatggc
     1681 cgctgcgctg gcggcacggc ttcgagctcg tcccgggtgc cctcgtggtc ccgcactacg
     1741 acgcctggcc cgagccgctc agcgcggtca tcgcgctcca ggcgccgcgc ggctcggtcg
     1801 tgctcgggat cgacgaggag acggcgctcg tgggacgcga aggcgcctgg cgggtccacg
     1861 gccggtcgcg ggtcacgctc tggcggggcc gccatcgcga gcgctaccac gcgggcgaga
     1921 gcttccggct gtaggcgagc cgggggcgtc gggggccgga tcagccgggc ttgacggtcc
     1981 ggaagcagtc ggagcagtag acgggccggt ccatccgcgg cttgaacggg acctgggcct
     2041 ggttgccgca ggacgagcag atcaccgcga agtactcgcg ggccggccgg tcgtcgctgc
     2101 gttcgtagcc gcgcggcccg ccgatgtcgc gcacgtcgta gcccccgtcc cgtgacgcac
     2161 gccggctggc acggcatgag ctgcagcgct tcgggtcact cgcgaacccc ttctgtgcgt
     2221 agtactcctg atcggcagct gaatgaatga acccaacacc acaatcgaca caggtcaggg
     2281 tccgatcgac gtaggtcacg gtgatcctcc ggggcgcgtt gatctccagg ggtgcgtcgg
     2341 aatcaggggg cagccgtatc ggcggacggg acgagcgagg tctggcgagg aatgccgggg
     2401 ccgcacgacc caggtgtcga tgtggtttcc ctgtttcggg gcgcaccggt gtagtgaccg
     2461 gcaggataca tcgacccggg caatcgggcc cgcgacggtg acaccgtacc tgtcacaatg
     2521 gggttcgaga gtcgggtcag cgagcgggga gtcatggggg cgcctcgctc gcgtccatgc
     2581 tccagcgtcg atcggccgga cccgtgacag ccagggaggc gagccgcacc accggatgct
     2641 gaggctgatc cataccgcag acgtccacct cggagcccgg catgacgacc tgggggagca
     2701 ggccgcggcc cagcgagagc gccagttcgc ggcgttcaag gccgccgtgg acctggcgct
     2761 gaccgagaag gtggacctgc tcctgatcgc cggcgacctg ttcgactcga acgtccagcc
     2821 ccgccgctcg gtcgagcgcg tggcggccga gctcaagcgc ctggccggtg cccggatccg
     2881 gacggtgatc atcccgggca cccatgacgt gtacgacaag gcgtccatct accgcgccta
     2941 cgaccttccc gcgctggccg ggaacgggcc ctccgacgac ctcgtcaccg ttctcgatcc
     3001 cgatcatccc tcggtccacc tggcgacctg cgacgtcgtc gtcttcgggc cggtcttcgc
     3061 caccaagcgc gcaccgcaca gcccgttgcg cgacctcgac gcgagccggg acgcgacggc
     3121 cgcgacgtgg cggatcggga tggtccacgg cgcgatcgcg atcccgggca agaccgatcg
     3181 cgatgaggtc gtgatcacga ccgaggagat cgccgcgacc cacctggact acctggcgct
     3241 cgggcactgg cactcggccc agagcgggcg ggcggggacg gtcacctacg cctactcggg
     3301 cgcacccgag gcggtggccc tcgaccagga tcgcgccggc aaggtgctgc tcgtggagct
     3361 cgacgagcgc aacggcgccc ggacggtcaa ggtggaggag cggcaggtcg gccggacgcg
     3421 cttcgagaag cgcgagatcg acgccgcggc ggtcgccagc cagccggccc tcgtcgagag
     3481 cctcgccgcg gccgccgatc ccgacctggt cctcgacgtc cgcctcgtcg gcgtccggcc
     3541 ggacgagctc gacctggacc tcgacgaggt cgagggctcg ctcgcgccgt cgttcctcaa
     3601 ggtccgggtc cgcgacgcgt ccctgcccgc cctgacggac ggcccgttgc cgtcgcccga
     3661 cacgatcgcc ggcgcgttca tccgcgatct cgaggccagg atcgcggagc tcgaggcggc
     3721 cggctccgcg gccgaggccg ccgagcagcg cgacgccctc cggctcggcc ggctcctgct
     3781 cgccgggcac gaggtctcgc tgtgagggtc cgtcgcctga gcgcccggga tttccggcgc
     3841 tatcgcgagc tcgacatcgc cttcgccccc gggctgaccg tcgtccgtgg cccgaacgag
     3901 gcgggcaaga gcacggtcca gcgcgcgctc gagctggtcc tgacgcgccg ggccacgagc
     3961 accgccgccg aggtcgaggc gatgcgcccg tgggacgcgc ccgccgaggc gcggtcggtc
     4021 atctcgatcg agttcgagca ggacgagggc gacgagcgga agaccggcac cgtcgagaag
     4081 acgttcgccg gcggcaaggg gaccgtccgc ctggactacg acggccaggc catcgccgac
     4141 ccgaccctcg ccgaccaggt cctggccgag ctgaccggga tcccgaccga ggcgttcttc
     4201 cggtccacgg cgtcggtcca ccacttcgag atcagcgacc tcgcccgcga cgagagcgcc
     4261 ctgcgcgacc gcctgcaggc ctcgatcagc ggtgccgacc ggggcaccag ccgcgcccgc
     4321 cgcaagctcg atcgcgcgct ccacgacctg acgaccaagg gcgagcgcaa cccgggccgg
     4381 ctcaaggtcg cggaccaggc ggtggcccaa gcccgggcgg ccgtcgagca
//
LOCUS       DATDDI010000597         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_554325, whole genome shotgun sequence.
ACCESSION   DATDDI010000597 DATDDI010000000
VERSION     DATDDI010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554325"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..869)
                     /locus_tag="VIU37_08580"
     CDS             complement(45..869)
                     /locus_tag="VIU37_08580"
                     /inference="COORDINATES: protein motif:HMM:NF014003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent chlorinase/fluorinase"
                     /protein_id="HEY6014050.1"
                     /translation="MRPLITFTTDFGPAAPAVCRGVMFGICPDAKVIDISHQVPRYAI
                     REGAGTLRFALPYMPVGIHVAVVDPGVGTERLAVALRTARGDILIGPDNGLLIPAAEA
                     LGGIAEARSLENRELMLPVVSASFHGRDIFAPMAAHLAGGVPFATVGPTVPVERLVRL
                     PEVRPTIREGRFESVIVHVLIFGNVTLAGVPADLEAAIGPLTPGRPLVVEFPAHGDLP
                     AVEERTVWERTFGRVPVGASLLMADSEGNLELADNQGDVARRLGLAVDRPVRVRPG"
     gene            1029..1502
                     /locus_tag="VIU37_08585"
     CDS             1029..1502
                     /locus_tag="VIU37_08585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014051.1"
                     /translation="MSGTELPRDLGSDQALADADQVAATADQKVSDEDRAGSMADQWS
                     AQADQTASDRDQATADRIHAGGHMTAAEERDYKVSRMDRDMVSFARQKTRMDRARTAI
                     HRDASAARRIGSGARREQIAAGRAERALRRAAGALLHKVAEAATRVTHGIGKGPN"
BASE COUNT          239 a          517 c          586 g          168 t
ORIGIN      
        1 gtgtgctgac ggggagtgag tctacccgct gccccggtgg cggatcagcc ggggcggaca
       61 cggacggggc gatcgacggc cagcccgagc cgccgggcga catcgccctg attgtcggcg
      121 agctcgaggt tgccctcgga atcggccatc agcagcgacg cccccaccgg cacgcgcccg
      181 aaggtccgct cccagaccgt ccgctcctcg accgccggca agtcgccgtg ggccgggaac
      241 tcgacgacca gcggccgccc gggcgtcagc ggcccgatcg cggcctcgag gtccgccggc
      301 acgccggcga gggtcacgtt gccgaagatg aggacgtgga cgatcaccga ttcgaaccgc
      361 ccctcgcgga tcgtcgggcg gacctcgggg agccggacca ggcgctcgac cgggacggtc
      421 gggccgaccg tcgcgaacgg gacgccaccg gccagatggg cggccatcgg agcgaagatg
      481 tcgcgaccgt ggaagctcgc gctgacgacg ggaagcatga gctcgcggtt ctcgagcgag
      541 cgcgcctcgg cgatcccgcc gagggcctcg gctgccggga tcagcagccc gttgtccggc
      601 ccgatcagga tgtcgccccg cgcggtgcgg agggcgacgg ccagtcgctc ggtcccgacg
      661 ccgggatcga cgacggcgac atggatgccg accggcatgt acgggagcgc gaagcgcaac
      721 gtcccggcgc cctcacggat ggcgtaccgc gggacctggt gcgagatgtc gatgaccttg
      781 gcgtcggggc agatcccgaa catgacgcct cggcagacgg cgggcgcggc ggggccgaag
      841 tcggtggtga aggtgatcag gggtcgcatc cgcggatggt acccaagccc caggagccgg
      901 ggcatggcca cgccggcgag cgtcgcgcgg cgagggccag taggcaagcg gcctgcacgg
      961 gtgtacggtg ggtcgtggcc gcctcgcaaa ccggccgctc cgacgtcgtg tttgacaggg
     1021 ggtcccactt gagcggcacc gagttgcccc gggatctggg ttccgaccag gcgctggccg
     1081 acgccgacca ggtcgcggca acggccgacc agaaggtctc ggacgaggac cgcgccgggt
     1141 cgatggccga ccagtggagc gcccaggccg accagacggc atccgaccgg gatcaggcca
     1201 ccgcggaccg gatccacgcc ggcggccaca tgacggctgc ggaggagcgc gactacaagg
     1261 tgtcgcggat ggatcgcgac atggtgtcgt tcgcgcgcca gaagaccagg atggaccggg
     1321 cgcgcacggc gatccaccgg gatgcgtccg cggccaggcg catcgggtcc ggcgcgaggc
     1381 gcgaacagat cgccgcggga cgtgccgaac gcgcgttgcg tcgcgccgcg ggagccctcc
     1441 tccacaaggt cgccgaggcg gcgacccggg tgacgcacgg gatcggcaag ggcccgaact
     1501 aggcggggcc
//
LOCUS       DATDDI010000598         2851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_387678, whole genome shotgun sequence.
ACCESSION   DATDDI010000598 DATDDI010000000
VERSION     DATDDI010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387678"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..1062
                     /locus_tag="VIU37_08590"
     CDS             274..1062
                     /locus_tag="VIU37_08590"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEY6014052.1"
                     /translation="MKPPTVFLGEMTDPEVEAHLLGGQTVIVPVGSTEQHGPHAPLLT
                     DVLIPVEVARRVAEATRALVAPSVNYALSYPHAGFTGVVHVRISTFMALIEDLCVSLA
                     TVGFRRIVFLNGHYDNTYAIAYACAAASDRMPPGVRAFPVNYWDGMTPAEAAEFFDPA
                     TGLHANRGETSAVLAIAPDLVDMDRANAEYPPFPDVTSPAPVHTAFFFSSPGSVHRAT
                     ASGTWGDATQASAEFGERYLSVVTASTIRLLEDIERTFEAMPPR"
     gene            complement(1107..2279)
                     /gene="nagA"
                     /locus_tag="VIU37_08595"
     CDS             complement(1107..2279)
                     /gene="nagA"
                     /locus_tag="VIU37_08595"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008448 - N-acetylglucosamine-6-phosphate
                     deacetylase activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEY6014053.1"
                     /translation="MTSAATIVEGRLVLDDRVVAGRIAIEDGWIAAVDLDGAPDPGSR
                     AGTAGDRLITPGFVDVHVHGGGGHDAMGDRAALDGMARHLLRHGITAFLPTAVAAPLE
                     TLVAFAGRVRAWLPDAPADGAKPLGFNLEGPFLAAARKGAHDPAHLRAPADVPAAALE
                     PLVDGLRVVTIAPELPGAVELIARLRELGVVASIGHSAATLDEAMDGYRAGGTSTTHL
                     FNAMTGVDHRAPGLAVAALLDDAAYVELIADGIHVHPGLWPLILRLKPADRLLLVSDA
                     ISLTGMGDGRAEVGGLAVEVVGGRVTLAGTSTLAGSVLTLDVAVRNLVASGLALPAAV
                     AAASRNPLAMLGVTDRGRIAAGQRADLVELDADLRVLRVMRAGRWSASGAEAGRAG"
     gene            complement(2276..>2851)
                     /locus_tag="VIU37_08600"
     CDS             complement(2276..>2851)
                     /locus_tag="VIU37_08600"
                     /inference="COORDINATES: protein motif:HMM:NF019322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6014054.1"
                     /translation="LIRREPGRGSFVAEPPAHRRANRLMTFSEEMRRAGRVPSSRILT
                     RVIRPSTEAEAADLAIPVHQPIVHLRRLRQADDEPIALESSVLIGACADAVMTADLAH
                     GSLHETLTLAGFSLFRGTGTIAAAAASAEVARYLGIRTGDPLLVERRVIRDGHGRRIE
                     ATESVYPADRYALEIHFDVEVGDVIAQNGHS"
BASE COUNT          385 a         1049 c         1055 g          362 t
ORIGIN      
        1 tcggacccca gcccgagacg tcgctcgagg acgggatccg atcgaccatc gagacctatc
       61 gggacggaat gcgccgcggg ctgatcgact cggcgtacct ggaccgcgtg ctcgcctgac
      121 ccgcgcgggc gcccgccggc cgtccgggga ccgcaacggt ctccgcctga gcgcggtcac
      181 cccataccat ctgcggagcg cgcgcaggcc ggaccgcggc cgccgcggac ccgacgacac
      241 ccacgcccgt cccgcgccaa ggaggccgtc gccatgaagc cgccgaccgt gttcctcggc
      301 gagatgaccg acccggaggt ggaggcccac ctgctcggag ggcagacggt gatcgtgccc
      361 gtcggctcga ccgagcagca cggaccgcac gcgccgctgc tgaccgacgt gctgatcccg
      421 gtcgaggtcg cgcgacgcgt ggcggaggcg accagggcgc tcgtggcccc atcggtcaac
      481 tacgccctgt cctacccgca cgccggcttc acgggcgtcg tccacgtgcg gatctcgacg
      541 ttcatggcgc tcatcgagga cctgtgcgtc tcgctcgcga ccgtcggctt ccgccggatc
      601 gtgttcctga acggtcacta cgacaacacc tacgcgatcg cctacgcgtg tgccgccgcg
      661 tcggaccgga tgccgcccgg tgtccgggcc ttcccggtca actactggga cgggatgacg
      721 cccgccgagg cggcggagtt cttcgacccc gccacggggc tccacgcgaa ccggggagag
      781 acgtcggccg tgctggcgat cgccccggat ctggtcgaca tggaccgggc gaacgcggag
      841 tacccgccgt tccccgacgt caccagtccg gcgccggtcc acaccgcgtt cttcttctcg
      901 tcgccgggtt cggtccaccg cgccaccgcg tcggggacgt ggggcgacgc cacgcaggca
      961 agcgccgagt tcggcgagcg ctacctgagc gtcgtgaccg cgtcgacgat ccgcctgctg
     1021 gaggacatcg agcggacgtt cgaggcgatg ccgccgcgct gaccggcggt gctggggccg
     1081 gcggcgcggc gcccggctgt gcggcgtcag ccggctcggc cggcctcggc tccggacgcc
     1141 gaccagcggc ccgcgcgcat gacccgcaac acccgcaggt cggcgtccag ctcgaccagg
     1201 tcggcgcgct gtcccgcggc gatccggccg cggtccgtga ccccgagcat ggccagcggg
     1261 ttccggctcg cggcggcgac cgcggcgggc agtgccagac cggacgcgac caggttgcgc
     1321 accgccacgt ccagcgtcag gacggatccg gccagcgtgg acgtgcccgc gagcgtcacc
     1381 cgcccgccca cgacctccac cgcgaggcca ccgacctccg cccgcccgtc gcccatgccg
     1441 gtgagcgaga tggcatcgct gacgagcagg aggcggtcgg ccggtttgag ccggaggatc
     1501 agcggccaga gcccggggtg gacgtggatg ccgtcggcga tcagctcgac gtacgccgca
     1561 tcgtcgagga gcgccgccac cgccagcccg ggggcgcggt gatccacgcc ggtcatcgcg
     1621 ttgaacaggt gggtcgtcga ggtcccgccg gcgcggtagc cgtccatcgc ctcgtcgagc
     1681 gtggcggcgg aatggccgat cgaggcgacc acgccgagct cgcgaagccg ggcgatcagc
     1741 tcgaccgccc ccggcagctc cggtgcgatc gtcacgaccc gcaggccgtc gacgagcggc
     1801 tccaacgccg cagccggcac gtcggccggc gcccggagat gggccgggtc gtgcgcgccc
     1861 ttgcgggcgg cggccaggaa cggcccttcg agattgaagc cgagcggctt ggcgccgtcg
     1921 gccggtgcat ccgggagcca ggcgcggacg cggccggcga acgccacgag cgtctcgagc
     1981 ggcgccgcga cggcggtcgg caggaaggcc gtgatgccgt ggcggaggag gtggcgcgcc
     2041 atgccgtcca gcgccgctcg gtcgcccatc gcgtcgtgac cgccgccgcc gtggacgtgg
     2101 acgtcgacga aaccgggggt gatgagccga tccccggcgg tgcccgcccg ggagcccggg
     2161 tcaggcgcgc cgtccaggtc gaccgccgcg atccagccgt cctcgatcgc gatccggccg
     2221 gcgacgaccc ggtcgtcgag cacgagccga ccttcgacga tcgtggccgc ggatgtcacg
     2281 agtggccgtt ctgtgcgatg acgtccccga cctcgacgtc gaagtggatc tcgagggcgt
     2341 agcggtcggc cgggtagacg gattcggtcg cttcgatcct gcgaccgtgg ccgtcgcgga
     2401 tcacgcgtcg ctcgaccagc agggggtcac cggtgcggat cccgagatag cgggcgacct
     2461 cggcgctcgc cgccgcggcg gcgatcgtgc cggtcccacg gaacagggag aacccggcca
     2521 gcgtgagcgt ctcgtggagc gatccgtggg ccaggtcggc ggtcatgacg gcatcggcgc
     2581 aggcaccgat caggacgctc gattcgagcg cgatcggctc gtcgtcggcc tgccgcaacc
     2641 ggcggagatg gacgatcggc tggtgcacgg ggatggcgag gtcggcggcc tccgcctccg
     2701 tcgacgggcg gatcacgcgg gtcaggatcc tcgagctcgg cacgcgcccg gcgcggcgca
     2761 tctcctcgct gaaggtcatc agccggtttg cgcgccgatg cgccggtggc tcggcgacga
     2821 agctgccgcg gcccggctcg cgccggatca g
//
LOCUS       DATDDI010000599         1638 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_741139, whole genome shotgun sequence.
ACCESSION   DATDDI010000599 DATDDI010000000
VERSION     DATDDI010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741139"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /gene="fliE"
                     /locus_tag="VIU37_08605"
     CDS             <1..344
                     /gene="fliE"
                     /locus_tag="VIU37_08605"
                     /inference="COORDINATES: protein motif:HMM:NF014143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEY6014055.1"
                     /translation="PVAPTSVAQDAGGLGGAVTAPSVTGVAGTTSVPGAATPDPAGGF
                     LDTLGNAFGQLNGQLVSADAALADFAAGGSSDLHTVMLQMQEASLGLQLGVQVRDKFL
                     EAYQEIMRLQL"
     gene            367..>1638
                     /gene="fliF"
                     /locus_tag="VIU37_08610"
     CDS             367..>1638
                     /gene="fliF"
                     /locus_tag="VIU37_08610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HEY6014056.1"
                     /translation="MIDQLQLLVRQLTTSQKIGIGFGALASVFVLVVFVFMAGQTPMQ
                     AAFTRLSTPDAAAISEALRTAKIPFQVADAGATILVPSSALADARVAAGAAGISTDGA
                     AKGFELFDNAGFGMSEFDQQVTYQRALEGKLTGVIEAMDGVDTATVSIVMAQTGIFAD
                     QDQPAAASVVVRMRNGQPPDAAMVRGMVSSVASAVAGLTPDNVTVVDESGRLLAGPQG
                     ELAGDALTMQGSVERQIEAKVQELVDRALGPGHASVAVSASLDMDKVDQTVTTIRPID
                     EGNWTPTSVQTVEERYGGADGTGSGGIPGVVSNVPGLPTYPGGLPSAAPSASPSPGAS
                     ASVTPAASAAPVASPAPAASGATTGYVKSQQTVNYTNSQTVERIIKQPGAIERLSVAV
                     LLDQAALGAVTADSLQATINAAIGADPARGDV"
BASE COUNT          244 a          613 c          572 g          209 t
ORIGIN      
        1 ccccggtcgc ccccacgagc gtggcccagg acgcgggcgg cctcggcggc gccgtcacgg
       61 cgccctccgt caccggtgtc gcgggcacga cgtccgtccc cggcgcggcg acacccgatc
      121 ccgccggggg gttcctcgac acgctcggca acgccttcgg gcagctcaac gggcagctcg
      181 tcagcgccga cgcggcgctg gccgatttcg cggcgggtgg ctcgagcgac cttcacacgg
      241 tgatgctcca gatgcaggaa gcctcgctcg ggctgcagct cggggtccag gtccgggaca
      301 agttcctcga ggcctaccag gagatcatgc ggctccagct gtgagcgctg accaagaagg
      361 aacgacatga tcgaccagct ccagctgctc gtacgccagc tcacgacgtc gcagaagatc
      421 gggatcggct tcggcgccct ggcctccgtc ttcgtcctcg tcgtattcgt gttcatggcc
      481 ggccagacgc cgatgcaggc cgccttcacc cgcctgtcca cccccgacgc ggcggcgatc
      541 agcgaggcgc tgcgaaccgc caagatcccg ttccaggtcg ccgacgccgg cgccacgatc
      601 ctcgtgccgt cgtccgcgct ggccgacgcg cgcgtcgccg ccggcgctgc ggggatctcg
      661 accgacggcg ccgccaaggg cttcgagctg ttcgacaacg ccggcttcgg gatgtccgaa
      721 ttcgaccagc aggtcaccta ccagcgggcg ctcgaaggca agctcaccgg ggtcatcgag
      781 gcgatggacg gcgtggacac cgcgaccgtc tcgatcgtga tggcccagac gggtatcttc
      841 gccgaccagg accagccagc ggccgcgtcc gtcgtggtcc ggatgcgcaa cggccagccg
      901 cctgacgcgg ccatggtccg gggcatggtc agctcggtcg cgagcgccgt ggccggcctg
      961 acaccggaca acgtcacggt cgtcgacgaa tccggccggc tgctggcggg tccccagggc
     1021 gagctcgcgg gcgacgccct caccatgcag gggagcgtcg agcgccagat cgaggccaag
     1081 gtccaggagc tcgtcgatcg ggcccttggc ccgggccacg catcggtcgc ggtctccgcg
     1141 tcgctcgaca tggacaaggt cgaccagacc gtcaccacga tccggccgat cgacgagggc
     1201 aactggacgc cgacgagcgt gcagaccgtc gaggagcgct acggcggcgc cgacgggacc
     1261 ggctcgggcg ggatcccggg ggtcgtgtcg aacgtgcccg gcctgccgac ctacccgggc
     1321 gggcttccga gcgccgctcc gagcgcgagc ccgtcgccgg gtgcctcggc gagcgtcacg
     1381 ccggcggcca gcgccgcccc ggttgcgagc ccggcaccgg cggccagcgg cgcaacgacc
     1441 ggctacgtca agtcccagca gacggtcaac tacacgaact cccagaccgt cgagcggatc
     1501 atcaagcagc ccggggccat cgagcggctc agcgtcgccg tcctgctcga ccaggcggcg
     1561 ctcggcgccg tcacggccga cagcctccag gccacgatca acgcggcgat cggcgcggac
     1621 cccgcgcgcg gcgacgtg
//
LOCUS       DATDDI010000600         1869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_658009, whole genome shotgun sequence.
ACCESSION   DATDDI010000600 DATDDI010000000
VERSION     DATDDI010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658009"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VIU37_08615"
     CDS             complement(<1..240)
                     /locus_tag="VIU37_08615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014057.1"
                     /translation="MSSQPAAKFFVNQGVVSSRADMLHLLRPLLKQTVTYRYHRGRDL
                     VSHGTGWVERIVVDADDISTYFTPLAITLNIDSFEH"
     gene            354..1166
                     /locus_tag="VIU37_08620"
     CDS             354..1166
                     /locus_tag="VIU37_08620"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:TIGR00671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEY6014058.1"
                     /translation="MLLALDVGNSNITTGLFRAGVLVGTRRAATLPRATPDELELVLA
                     GLLSLDDVGLADLDSIVLASVVPSVTSAVEVVAERHERPLLIVSAGSVPIAIRVDRPG
                     EVGADRLVNALAIARLYGTPAVVADFGTATTFDCVAADGAYVGGAIVPGLELGLEALA
                     GRTAKLPKVELHAPDRAIGRDTVGAIQSGAVLGYQALAAGLLERVRAELAEANGVPPA
                     AVHAVATGGLSRAPWIRAVRGFDAIDPDLTLKGLALLHAEVGGGEPLELGLP"
     gene            1163..>1869
                     /locus_tag="VIU37_08625"
     CDS             1163..>1869
                     /locus_tag="VIU37_08625"
                     /inference="COORDINATES: protein motif:HMM:NF014494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavoprotein"
                     /protein_id="HEY6014059.1"
                     /translation="MTGRTGGRLAGRLVGLGVTGSIAAYKAVELLRLLRLEGADVAVM
                     LTPSAAQFVGPLSFAALSRHPVETDLLGLLPDGRIGHIVVGDTADAIAVAPATAHFLG
                     AMANGLAGDVVTATCLASRAPIVVAPAMDGDMWTHPATQANVARLRDAFGYRIVEPEQ
                     GSLASGQSGVGRLADLGLIVDAIVEVVAARPIRSPDPAARPPLVATARDADLTGRHIV
                     VSAGGTREAIDPVRFIG"
BASE COUNT          231 a          690 c          677 g          271 t
ORIGIN      
        1 atgctcgaag gaatcgatgt tcagcgtgat ggccaggggg gtgaagtagg tcgagatgtc
       61 gtcggcatcg accacgatcc gctcgaccca gccggtaccg tggctgacca ggtcccgacc
      121 gcggtgatag cggtacgtga ccgtctgctt gagcaggggt cggagcaggt ggagcatgtc
      181 cgcgcgggac gacacgacgc cctggttgac gaagaacttc gccgcaggct ggctcgacat
      241 gcggggcgtc acctcagggc acggaggctg gacgaacgtc ccgatggtac cgcaccccac
      301 cgaccgcgac gacgcgaatc tgagcccggc cgggcccgcg tatcatcgtc gcgatgctcc
      361 tcgcgctcga cgtcggcaac tccaacatca cgaccggcct gttccgggcg ggggtgctgg
      421 tgggaacccg tcgcgccgcc accttgccgc gcgccacgcc cgacgagctc gagctggtcc
      481 tggccgggtt gctcagcctg gacgacgtgg ggctggccga cctggattcg atcgtcctcg
      541 cgtcggtcgt cccgtcggtc acgtcggcgg tcgaagtcgt cgccgagcgc catgagcggc
      601 cgctgctgat cgtgtccgcc ggcagcgtcc ccatcgcgat ccgggtcgac cggcccggcg
      661 aggtcggcgc ggaccggctg gtcaacgcgt tggcgatcgc ccgcctgtac gggacgcccg
      721 ccgtggtcgc cgacttcggg accgccacca ccttcgactg cgtggccgcc gacggcgcct
      781 acgtcggcgg cgcgatcgtc cctggcctgg agctcggact cgaggcgctg gccgggcgga
      841 cggcgaagct gccgaaggtc gagctgcacg ccccggaccg ggcgatcggg cgtgacaccg
      901 tgggggccat ccagtctggc gcggtcctcg ggtaccaggc gctcgccgcc ggactgctcg
      961 agcgggtgcg cgccgagctc gcagaggcga atggcgtgcc cccggcggcg gtccatgccg
     1021 tcgcgacggg cgggctgtcg cgggcaccct ggatccgggc cgtccgcggc ttcgacgcca
     1081 tcgaccccga cctgaccctc aagggcctgg cactcctcca cgcggaggtc ggcggcggcg
     1141 aacccctcga gctgggcctg ccatgaccgg tcggaccggc ggacgtttgg ccgggcgcct
     1201 cgtcgggctg ggcgtcaccg gctcgatcgc cgcctacaag gccgtcgagc tgctgcgcct
     1261 cctgcgtctc gagggcgccg acgtcgcggt gatgctgacc ccatccgcgg cgcagttcgt
     1321 cggcccgctg tcgttcgccg ccctctcccg ccacccggtc gagaccgacc tgctcgggct
     1381 gctgccggac gggcggatcg ggcacatcgt cgtcggcgac acggccgatg ccatcgcggt
     1441 cgcgccggcg accgcccact tcctcggggc gatggccaac gggctggcgg gcgatgtcgt
     1501 gaccgccacc tgcctggcgt cgcgggcgcc gatcgtcgtg gcgccggcga tggacggcga
     1561 catgtggacg cacccagcga cccaggcgaa cgtggctcgt cttcgggacg ccttcggcta
     1621 ccggatcgtc gagcccgagc agggttcgct cgcatccggg cagtccggcg tcgggcggct
     1681 ggccgacctc gggctgatcg tcgacgcgat cgtcgaggtc gtggccgccc ggccgatccg
     1741 ctccccggat cccgccgccc gcccgcccct ggtcgccacc gcccgcgacg ccgacctgac
     1801 cggccggcac atcgtcgtct ccgccggcgg cacccgcgag gccatcgatc cggtccggtt
     1861 catcggcaa
//
LOCUS       DATDDI010000601         1915 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_325097, whole genome shotgun sequence.
ACCESSION   DATDDI010000601 DATDDI010000000
VERSION     DATDDI010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325097"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..811)
                     /locus_tag="VIU37_08630"
     CDS             complement(<1..811)
                     /locus_tag="VIU37_08630"
                     /inference="COORDINATES: protein motif:HMM:TIGR00904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY6014060.1"
                     /translation="MKIGIDLGTANVLVYVKGKGIVITEPSVVAVSDDNRIVAVGEEA
                     REMIGRTPGNIHAIRPMKDGVIADYVITEAMLSHFIGKVRRGGFGFSKPDVMISVPAG
                     VTSVEKRAVRDAALKAGAKDAYLIEEPLAAAIGANVPISGPSGNMIIDIGGGTSEIAV
                     IALGGIVVSRSLRVGGNRFDDAIATYIRKKYNLMVGERTAEEVKIQIGTALPLERELT
                     MEVRCRDLIAGLPRTIPITSSEVMEAIEAPLQQLVAAVRSVLEQTPPELSSD"
     gene            complement(808..>1915)
                     /gene="murA"
                     /locus_tag="VIU37_08635"
     CDS             complement(808..>1915)
                     /gene="murA"
                     /locus_tag="VIU37_08635"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF006873.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEY6014061.1"
                     /translation="VDHPAPSTYEIASGDVEWLFVPLEAAAKMRASFMLLGPLLARFG
                     RVIISNPGGDRIGRRPVDLHVDAMRVLGAEIEYRNGYYFARAPGRLRGAEVRFPFVSV
                     MGTENAMLAATLAEGHTVIRPAAQEPEVDDLIAFLQQMGAEVERTFPDTIEVEGRKRL
                     RGADHRVIPDRIEAGTFVIAAAVTGGRIRLEGAPCEHLGSFIETMGRVGVGVSCGKDT
                     IDVDGTAIGSSGYRACDVETAPYPGLATDLQPPTAVLLTQATGVSQVHEAIFEDRLEW
                     LSEVRRMGANVEVLDPHHATITGPNHLLGTEVEIGDLRAGASLILAALAAQGTTTIHG
                     AHHVHRGYENIERKFLDLGASISRTAEGAAVTSS"
BASE COUNT          261 a          672 c          669 g          313 t
ORIGIN      
        1 tgtccgacga cagctccggc ggcgtctgct cgagcaccga gcgcaccgcc gcgaccagct
       61 gctggagggg cgcctcgatc gcctccatca cctcgctgct ggtgatcggg atcgtgcgcg
      121 gcaggccggc gatcaggtcg cggcagcgaa cctccatggt cagctcgcgc tcgagcggaa
      181 gcgcggtccc gatctggatc ttgacctcct ccgcggtgcg ctctccgacc atcaggttgt
      241 acttcttgcg gatgtaggtc gcgatcgcgt cgtcgaagcg gttgccgccc acgcgcaacg
      301 accgggagac cacgatcccg ccgagggcga tgaccgcgat ctcgctcgtc ccgccgccga
      361 tgtcgatgat catgttgccg gacggcccgc tgatcgggac gttggcgccg atggcggccg
      421 cgaggggctc ctcgatcagg tacgcgtcct tggccccggc cttgagcgcc gcatcgcgga
      481 ccgcgcgctt ctcgacgctg gtcacgccgg ccggcacgga gatcatcacg tcgggcttgc
      541 tgaatccgaa cccgccccgg cggaccttgc cgatgaagtg gctgagcatc gcctcggtga
      601 tcacgtagtc ggcgatcacc ccgtccttca tcggccggat ggcatggatg ttgccgggcg
      661 tccgcccgat catctcgcgc gcctcctcgc cgacggcgac gatccggttg tcgtcggaga
      721 cggcgaccac gctgggttcg gtgatgacga tgcccttgcc cttgacgtag acgaggacgt
      781 tggcggtgcc gaggtcgatg ccgatcttca tgagctggtg actgctgccc cttccgcggt
      841 gcgcgagatg ctggccccga ggtccaggaa cttgcgctcg atgttctcat agcctcggtg
      901 cacgtggtgc gcgccgtgga tggtcgtcgt gccctgcgcc gcgagggcgg ccaggatgag
      961 tgatgcgccg gcccgcaggt cgccgatctc gacctccgtg cccagcaggt ggttgggtcc
     1021 ggtgatggtc gcatggtgcg ggtcgaggac ctcgacgttg gcgcccatcc gccggacctc
     1081 ggacagccac tccaggcgat cctcgaagat cgcttcgtgg acctgcgaga cgccggtggc
     1141 ctgggtcagc aggaccgctg tcggcggctg gaggtcggtc gccagccccg ggtacggcgc
     1201 ggtctccacg tcgcaggcgc ggtacccgga cgagccgatc gcggtgccgt cgacgtcgat
     1261 cgtgtccttg ccgcaggaca cgccgacccc gacccggccc atcgtctcga tgaacgagcc
     1321 gaggtgctcg cacggagccc cttcgagccg gatccggccg ccggtgacgg ccgcggcgat
     1381 gacgaacgtg ccggcctcga tccggtccgg gatcacgcgg tggtccgcgc cgcgcaggcg
     1441 cttgcgtccc tcgacctcga tcgtgtccgg gaacgtccgc tcgacctcgg cgcccatctg
     1501 ctggaggaag gcgatcaggt cgtccacttc cggctcctgc gccgccggcc ggatgaccgt
     1561 atggccctcg gccagcgtgg ccgccagcat cgcgttctcg gtgcccatga ccgatacgaa
     1621 cggaaaccgc acctccgccc cgcgcagccg gccgggcgcc cgggcgaagt agtagccgtt
     1681 gcggtactcg atctcggcgc cgaggacgcg catcgcgtcg acgtggagat cgaccggccg
     1741 gcggccgatc cggtcgccac ccgggttgct gatgatcacc cgtccgaagc gggcgaggag
     1801 cgggccgagg agcatgaagc tcgcccgcat cttcgccgcg gcctcgagcg ggacgaagag
     1861 ccactcgaca tcgcccgacg cgatctcgta cgtgctcggg gccggatggt cgacg
//
LOCUS       DATDDI010000602         1674 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_658060, whole genome shotgun sequence.
ACCESSION   DATDDI010000602 DATDDI010000000
VERSION     DATDDI010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658060"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1674
                     /locus_tag="VIU37_08640"
     CDS             <1..>1674
                     /locus_tag="VIU37_08640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014062.1"
                     /translation="LSDGELTGLYDAYVAERDAAPRGGMIWELCDLDQAVLATLDDRA
                     DGANVAIGRHAARSAEVQLDLEDDAAPLVEVGSTMLRCRMEGWDEPLFCGRVTGQAIG
                     YDDGDAGMTVTATDPLAQLEKAIVLVNKAAEFEPDVWGFADFGSGNDASAVMWFMLAY
                     FSANGYGIDEGLLAPSTPNPGVLLDDGAFGGAPGSAVWSNPDRAASSNDLYAVANIQP
                     TNTVPSGKSHYLRVEDLRLTIPDGATIDGVEVEVERHGSLHGGGGGYGDAAWVHDDTV
                     KLIKGGSISGTNKATTTKWPGADAVASYGGDGDKWGLTLSRADVVASNFGVAIAVTGE
                     TTGLGYDLDAAIDRVHVNVHYTYDGHAYATDHIVPVSLPAGTRLADALRSIVGLDGMP
                     EFELSPVERTGSMVEFNTYHPKQGEDKSASLILRLAVVGEEDTILEFGYEPTMGEIVN
                     RYTVVGEAGDNVAVKDGLNFPAHPAYQASHAASIAEYGVWEALDAAGSTSDATLLRHS
                     AIARVAACAYPVAAFSASLDPDTAPEFAPDGDFWIGDTIGLEAALPDGT"
BASE COUNT          271 a          571 c          587 g          245 t
ORIGIN      
        1 gctcagcgat ggcgaactga ccgggctcta cgacgcctac gtggccgagc gcgacgcggc
       61 gccgcgcggc gggatgatct gggagctatg cgatctcgac caagcggtgc tggcgacgct
      121 tgacgaccgg gccgacgggg cgaatgtcgc catcgggcgg cacgctgctc gatccgccga
      181 ggtgcaactc gacctcgaag acgacgccgc cccgctggtc gaggtcggct cgacgatgct
      241 gcgctgccgg atggagggtt gggacgagcc cctcttttgc gggcgggtga ccggccaggc
      301 gatcggctac gacgacggcg acgccgggat gacggtcacc gcgaccgatc cgctggccca
      361 gttggaaaag gcgatcgtgc tagtgaacaa ggccgccgag ttcgagcccg acgtgtgggg
      421 cttcgccgac ttcggctcgg gcaacgacgc ctcggcggtg atgtggttca tgctcgccta
      481 tttctccgcg aacggctacg ggatcgacga ggggctcctc gctccctcga cgccgaaccc
      541 cggcgtcctg ctcgacgatg gcgcgttcgg cggagcgccc ggcagcgccg tatggtcgaa
      601 ccccgaccgg gccgcctcct cgaacgatct ctatgccgtc gccaatattc agccgaccaa
      661 tacggtgccg agcggcaagt ctcactatct ccgggtcgaa gatctgaggc tcacgattcc
      721 cgacggcgcg acgatcgacg gggtggaggt cgaggtcgag cgccacggct ccctccacgg
      781 cggcgggggt gggtacggcg atgccgcctg ggtccacgac gacaccgtga agctgataaa
      841 gggcggctcg atctcgggca cgaacaaggc aacgacgacc aagtggccgg gcgccgacgc
      901 ggttgccagc tacggcggcg acggcgacaa gtgggggctg acgctgagcc gcgccgacgt
      961 ggtggcctcg aacttcgggg tggcgatcgc cgtgaccggc gagaccaccg ggctcggcta
     1021 cgacctcgac gccgcgatag atcgcgtcca tgtgaacgtc cactacacct acgacggcca
     1081 cgcctacgcc accgatcaca tcgtcccggt cagcctcccg gcgggcacgc ggctcgccga
     1141 cgcgctccgc tcgatcgtcg gcctggacgg gatgcccgag ttcgagctat ccccggtcga
     1201 gcggacgggc tcgatggtcg agttcaacac ctaccacccg aagcagggcg aggacaagag
     1261 cgcctcgcta atcctgcggc tcgccgtcgt gggcgaggag gacacgatct tggagttcgg
     1321 ctacgagccg acgatggggg agatcgtgaa ccgctacacg gtggtcggcg aggccgggga
     1381 taacgtcgcc gtcaaggacg ggctcaactt cccggcgcac cccgcctatc aggcgtccca
     1441 cgccgcgtcg atcgccgagt atggcgtctg ggaggcgctg gacgccgcgg gcagtacctc
     1501 cgacgcgacc ctgctccggc actcggcgat cgcgagggtc gcggcctgcg cctacccggt
     1561 ggccgctttc agcgcttccc tcgaccccga caccgcgccc gagttcgcgc cggatggcga
     1621 tttctggatc ggcgacacga tcgggctcga agcggcgctc cccgacggca ccat
//
LOCUS       DATDDI010000603         1851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_470761, whole genome shotgun sequence.
ACCESSION   DATDDI010000603 DATDDI010000000
VERSION     DATDDI010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470761"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..977)
                     /locus_tag="VIU37_08645"
     CDS             complement(150..977)
                     /locus_tag="VIU37_08645"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: protein motif:HMM:NF008808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HEY6014063.1"
                     /translation="MTTQAEVTATTPPAWRGTRAVEPGRILDDLEAGLIRAAEPDPAA
                     PDGWLVRPEVKAAILACFSDRTTLDWSAGPLTFRDRAAVPPRQDLAGGPWRIVPGGTA
                     VRRGAHLSSGVVVMPPSYLNVGAWVGPDTMVDSHVLVGSCAQIGARVHLAAGVTIGGV
                     LEPPGARPVIVEDDAFVGAGSALLDGVLVRTGAVIGAGVILTGTSRIYDLVRGRVIEG
                     EAARPLAVPANGVIVPGTRRLGGAFADTHGLGTSVALLVKDRDAGTSARVALEAALR"
     gene            complement(974..>1851)
                     /gene="dapA"
                     /locus_tag="VIU37_08650"
     CDS             complement(974..>1851)
                     /gene="dapA"
                     /locus_tag="VIU37_08650"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEY6014064.1"
                     /translation="RLVRWQILAGIDGLVPCGTTGESPTLSADERERLIAATVEVAGE
                     RASRDRVRVIAGTGSNDTAATIRATRRAAELGADAALVVAPYYNRPDGRMLEAHFRAI
                     ADEGDLPIVVYNVPSRTGSNVDADTFLRLADHPRIAGVKEASGNLDQIARICRDRPRD
                     VAVLAGDDAWTLAVLAMGGDGVVSVAANEIPAELVLLCAAARAGDWDAARRTHERWLP
                     LFQGNFRGGPNPVPVKAALALMGLLDSDMVRAPLLQMDPDGRAAMAVSLRGLGLLETG
                     GGRFAGRPATREAVA"
BASE COUNT          236 a          715 c          687 g          213 t
ORIGIN      
        1 gtccacgaca ccgaggtcgt agacgtacag cggggtgccg aatcgctcgg ccaggtcctg
       61 cggggccatc ccggcgagcc ggcccgcccg gaggatctcg ttgcgtgccg gcggccggcc
      121 gcgcctggga cggtcgtcga gggcgacgct catcgaagcg ccgcctcgag cgccacgcgc
      181 gccgacgtgc cggcatcgcg gtccttgacc agcaacgcca ccgacgtccc gaggccatgc
      241 gtgtcggcga acgcgccgcc gagccgccgg gtgccgggga cgatcacccc gttcgccggc
      301 acggcgagcg gccgggcggc ctccccttcg atgacccggc cgcggaccag gtcgtagatc
      361 cgcgacgtcc cggtcaggat caccccggca ccgatgacgg ccccggttcg gaccagcacc
      421 ccgtcgagca gggcgctgcc ggcgccgacg aacgcgtcgt cctcgacgat gaccggccgg
      481 gcgccgggcg gctcgaggac gccaccgatc gtgacgccgg cggccagatg gaccctcgcc
      541 ccgatctggg cgcacgagcc gaccagcacg tgcgaatcga ccatcgtgtc cggccccacc
      601 caggccccca cgttcaggta cgacggcggc atcacgacga cgccgctcga caggtgcgcc
      661 ccgcgccgca cggcggtccc gcccggcacg atccgccacg gcccgccggc caggtcctgc
      721 cgcggcggca cggcggcccg gtcgcggaag gtcagcggac cggccgacca gtcgagcgtg
      781 gtccgatccg agaagcaggc caggatggcc gccttgacct cgggcctgac gagccagccg
      841 tcgggcgccg ccggatcggg ctcggccgcc cggatcaggc cggcctcgag gtcgtccagg
      901 atccgacccg gctccacggc gcgggtcccg cgccacgcgg gcggcgttgt cgcggtgacc
      961 tcggcttggg tcgtcacgcc acggcctcgc gcgtcgccgg ccggcccgcg aaccggccgc
     1021 cgccggtctc tagcaggccg aggccgcgga ggctgaccgc catcgcggcg cggccgtccg
     1081 ggtccatctg gagcagcggg gcgcggacca tgtcggaatc gagcaggccc atcaatgcca
     1141 gggcggcctt gaccggcacc gggttgggcc cgccgcggaa gttgccctgg aacagcggca
     1201 gccagcgctc gtgcgtgcgc cgggccgcgt cccagtcgcc ggcccgggcg gccgcgcaga
     1261 gcaacaccag ctcggccggg atctcgttgg cggccaccga caccacgccg tcgccgccca
     1321 tcgccaggac cgccagcgtc caggcgtcgt caccggccag gaccgcgaca tcgcgcggcc
     1381 ggtcgcggca gatccgggcg atctggtcga ggttgccgct ggcctccttg accccggcga
     1441 tccgagggtg gtcggcgagc cgcaggaacg tgtcggcgtc gacgttcgat ccggtccgcg
     1501 acgggacgtt gtagacgacg atcgggaggt cgccctcgtc ggcgatcgcc cggaaatgcg
     1561 cctcgagcat gcgcccgtcg ggccggttgt agtacggcgc gacgacgagc gcggcgtcgg
     1621 ccccgagctc ggccgcgcgc cgcgtcgccc ggatcgtggc ggccgtgtcg ttgctgccgg
     1681 tgccggcgat cacccggacg cggtcccgcg acgctcgctc gccggccacc tcgacggtcg
     1741 cggcgatcag ccgctcgcgc tcgtccgcgc tgagggtggg ggattcgccg gtcgtgccgc
     1801 agggcacgag tccgtcgatg ccggccagga tctgccagcg gacgagacgc c
//
LOCUS       DATDDI010000604         1539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_616411, whole genome shotgun sequence.
ACCESSION   DATDDI010000604 DATDDI010000000
VERSION     DATDDI010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_616411"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VIU37_08655"
     CDS             complement(<1..629)
                     /locus_tag="VIU37_08655"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEY6014065.1"
                     /translation="MLARVSRSLPLGPPRRPSLTIVALALGSMVVATLLVAGLESGTP
                     VPDASAVYLVAVAVVGSVGGTWPAIATAVASFLAYDVLFLEPRLSLLIVEPTDWLNLV
                     LFLVVAVAVGRLAALGRERAAEADRRAREATDLFDVSRLVATADSTTEIAVQLVHKLA
                     DEGQADRVWIDLEGSPREHPLADTGSGPPPSPAVVLTLVRMPGSEPARW"
     gene            803..988
                     /locus_tag="VIU37_08660"
     CDS             803..988
                     /locus_tag="VIU37_08660"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6014066.1"
                     /translation="MAINELGPMLTATEVADMLHLHVNTVKRLGDRGELPFYRVCKRG
                     DRRFRLDDVMKFLTQNR"
     gene            complement(1052..>1539)
                     /locus_tag="VIU37_08665"
     CDS             complement(1052..>1539)
                     /locus_tag="VIU37_08665"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6014067.1"
                     /translation="AKAIANGLPLSAVISSRELQERWGRGAHGSTYGGNPVACAAGLA
                     VLETIREEGLVANAAARGAELMTGLAAIAAEDDRIGDIRGRGLMVGVEFVTDRETREP
                     DSTLPDRLIAACADAGLLVLTCGYSHQVVRWIPPLNVDAAEIAEGVEIFGETLTSMPR
                     D"
BASE COUNT          245 a          555 c          538 g          201 t
ORIGIN      
        1 atccatcgag ccggctcgct gccgggcatc cggacgaggg tcagcacgac ggccgggctg
       61 ggcggcgggc cactgcccgt gtcggcaagc ggatgctctc gcggggatcc ctcgaggtcg
      121 atccagaccc ggtctgcctg cccctcgtcg gcgagcttgt ggacgagctg cacggcgatc
      181 tcggtcgtcg agtccgcggt cgccacgagg cggctcacgt cgaacaggtc ggtcgcctcg
      241 cgcgcccgcc ggtccgcttc ggccgcccgt tcgcgcccga gggccgcgag tcgcccgacg
      301 gccaccgcca ccaccaggaa cagcaccagg ttgagccagt cggtcggctc gacgatcagg
      361 agcgagagcc ggggctcgag gaagaggacg tcataggcga ggaacgaggc gacggcggtg
      421 gcgatcgcgg gccaggtccc gccgacggat ccgacgaccg ccaccgccac gaggtagacg
      481 gccgacgcgt ccggaacggg cgtcccgctc tcgagccccg ccacgagcag cgtcgcgacg
      541 accatcgacc cgagcgccag tgccacgatc gtcaacgacg gccgtcgcgg gggccccagc
      601 gggagggagc gggagactcg ggcgagcacg cccggatggt acgaccgtcg gtactgccgg
      661 gtgacccaaa gtacggctag tcgcaggcca cccctcaccc ctacgctctg ccacgcaggg
      721 ggctggagtc caccgcggaa caccccaggg aaccagaccc tacgagcact gcacgaaacg
      781 aggcaaccgt ccaatggcat cgatggccat caacgaactg ggaccgatgc tcaccgcgac
      841 cgaggtcgct gacatgctcc atctgcatgt caacacggtg aagcggctcg gcgatcgcgg
      901 cgaattgccg ttctaccggg tctgcaagcg tggcgatcgt cggttccggc tcgacgacgt
      961 catgaagttc ctgacccaga accgctaggc ccgcagcact actgccgagc gcccgtccga
     1021 tggggggacg ggcgctcgtt gctgtccggc gtcagtcgcg cggcatcgac gtgagcgtct
     1081 ccccgaagat ctcgaccccc tcggcgatct cggccgcgtc gacgttgagc ggcgggatcc
     1141 agcggaccac ctggtggctg tagccgcagg tgagcaccag gaggcccgcg tcggcgcagg
     1201 ccgcgatcag ccggtcgggt agggtggaat cgggttcgcg agtctcgcga tcggtgacga
     1261 actccacgcc caccatcagc ccgcgtccgc ggatgtcccc gatccggtcg tcctcggcgg
     1321 cgatggccgc gagcccggtc atcagctccg cacctcgggc cgcggcgttc gcgacgaggc
     1381 cctcctcccg gatcgtctcg aggacggcca gtccggcggc gcacgcgacc gggttgccgc
     1441 cgtacgtgga cccgtgcgcg ccacgacccc agcgctcctg gagctcgcgg ctcgagatga
     1501 ccgccgacag cggcaggccg ttggcgatcg ccttggcca
//
LOCUS       DATDDI010000605         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_242078, whole genome shotgun sequence.
ACCESSION   DATDDI010000605 DATDDI010000000
VERSION     DATDDI010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242078"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1250
                     /locus_tag="VIU37_08670"
     CDS             <1..1250
                     /locus_tag="VIU37_08670"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6014068.1"
                     /translation="TGWWDELPTLVSRYGPDGALATARAIDEAVDGIGAWCRDNGVDA
                     WYTKAGALSVSAAPAQDGAWDEAVETCRALGVGDEYARLGEGEVRSRLASPVFRGGVL
                     MRGAATIQPAVLARGLRRVLLDRGVAIHEGTRVVELDGERPGWLGALGKSRRRGPAGQ
                     GRRRVRVRTVSARGDGMVTAASAVVAMNAWAAAWPSFGRRLVTWSSYIVLTEPIPDRL
                     AEIGWTGGEGVADGRFTLHYLRTTPDGRIALGGGGGRAGFGGRIGPAFTDDLASVRRA
                     AAGLRRLFPALRDVRIEDAWGGPIDITADHLPGIASVPGRPIHFAHGYSGNGVAPALL
                     AGRVLAALATERHDDPALALPIVGTLPRAFPPEPFRYAGARVVREAIVRAESAQERGE
                     RPGVVLREVSRLPRRLGYHLGPE"
     gene            1369..1557
                     /locus_tag="VIU37_08675"
     CDS             1369..1557
                     /locus_tag="VIU37_08675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014069.1"
                     /translation="MNSRPPVKPTTTVEPFKHVIDEYKHQAQTITCTCGWHGSSATTD
                     RGGSEWTAHLFEVRGKKR"
BASE COUNT          201 a          592 c          677 g          235 t
ORIGIN      
        1 tcacgggctg gtgggacgag ctgccgacgc tggtgtcgcg atacgggccc gacggagcgc
       61 tggccacggc ccgcgccatc gacgaggcgg tcgacgggat cggggcgtgg tgccgggaca
      121 acggcgtcga cgcctggtac accaaggccg gcgcgttgtc ggtcagtgcg gcgcccgccc
      181 aggacggtgc ctgggacgag gccgtcgaga cgtgccgggc gctcggggtg ggggacgagt
      241 acgcccgcct cggcgagggc gaagttcgat cgcggctggc gtcgccggtc tttcgcggcg
      301 gcgtgctcat gcgcggcgcg gccaccatcc agcccgccgt cctggcgcgt ggcctgcgta
      361 gggtgctgct cgaccgcggc gtggcgatcc acgaagggac gcgggtcgtg gagctcgacg
      421 gcgagcgacc gggctggctg ggggcgctgg ggaagtcccg ccggcggggc ccggccggac
      481 agggccgtcg ccgggtccgg gtccggaccg tctcggcgcg cggggacggc atggtgacgg
      541 ccgcctcggc cgtggtggcg atgaacgcct gggcggcggc atggccgtcg ttcgggcgac
      601 ggttggtgac ctggtcgagc tacatcgtcc tgaccgagcc gatcccggat cgcctcgccg
      661 agatcggctg gaccgggggc gagggcgtcg ccgacggccg cttcacgctg cactacctgc
      721 ggacgacacc cgacgggcgg atcgcgctcg gtggcggggg cggccgcgcc ggcttcggtg
      781 gccggatcgg gccggccttc acggacgacc tggcgtctgt ccgtcgagcg gcggccgggc
      841 tgcgacggct gttccccgcg ctgcgcgacg tccggatcga ggacgcctgg ggcggcccga
      901 tcgacatcac cgccgaccac ctgccgggca tcgcgtctgt gccggggcgg ccgatccact
      961 tcgcccatgg gtactcggga aacggcgtgg cgcctgcgtt gctggctggc cgggtgctgg
     1021 ccgcgctggc gaccgagcgg cacgatgatc cggcgctggc gctaccgatc gtcgggacgc
     1081 tgccccgcgc cttcccgccc gaaccgttcc gctatgcggg cgcgcgggtc gtccgtgagg
     1141 cgatcgtgcg ggcggagtcg gcccaggagc gcggggagcg gccgggcgtc gtgctgcgcg
     1201 aggtcagccg gctgccgcgg cggctcgggt accacctggg tccggagtag gggccgtttg
     1261 gaccggcgtc cggcgggccc tcgccgagcg ggaatcgacc ggatcgggta aagtagaagg
     1321 cccccgctcg cacgtcgcgt gccctcgttc caccgtgcag gagtccctgt gaacagtcgt
     1381 cctccggtca agcccacgac cacggttgag ccgttcaagc acgtgatcga cgagtacaaa
     1441 caccaggccc agacgatcac ctgcacatgt ggctggcacg gcagctcggc gaccaccgac
     1501 cgcggcgggt cggagtggac ggcacacctg ttcgaggttc gcggcaagaa gcgatagccg
     1561 cggcgctcgg gcgcccgatc cgcgcgttgc tcgctccgcg cgttcgctta cgcactccag
     1621 cgtgcgctcg ctctcgtgct ccctcgcgcc ttcggctcga acgccccagc gccgcggcag
     1681 gcccggggcg tgacgggcga cgcgc
//
LOCUS       DATDDI010000606         1779 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_678956, whole genome shotgun sequence.
ACCESSION   DATDDI010000606 DATDDI010000000
VERSION     DATDDI010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678956"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..389
                     /locus_tag="VIU37_08680"
     CDS             <1..389
                     /locus_tag="VIU37_08680"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEY6014070.1"
                     /translation="KALKDAYGIDVANATKLSACDTPMAQALKGKTIDVAELCSTQPD
                     IAVNGWVVLEDDKQTQPADNLAPLVRNDLLAKLADKNSFENILNQVSAAMDTATLTDL
                     GKQIAVDNKDVAEVAKAWLQSKNLFQ"
     gene            complement(450..1256)
                     /locus_tag="VIU37_08685"
     CDS             complement(450..1256)
                     /locus_tag="VIU37_08685"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6014071.1"
                     /translation="MKTPPALDALNPATSVPGGRPRLVIVMPAYNAARTLQRTYADIP
                     HEIVDQIILVDDVSADETVEIASQLGLVVIIHPENRGYGGNQKTCYDAALAAGAEIVV
                     MLHPDYQYDATRIPALIAPIADGSRDLMLGSRFLGDPLAGGMPRWKYVSNRFLTELEN
                     LAFGLRLSEYHTGLRAYSRHLLETIPYALNSDDFVFDQELIAQVVAAGLTDRIGEIAV
                     PTRYFDEASSVGLRRSIVYGLSTLRVVARYLLHRMRLRRSPKLTARRPTE"
     gene            1357..>1779
                     /locus_tag="VIU37_08690"
     CDS             1357..>1779
                     /locus_tag="VIU37_08690"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY6014072.1"
                     /translation="MFERLFGNRDQDPAIAARIPPGQYRTEKFPVLHYGSVPHTDLAT
                     WDFRVWGEVDSPFTLTWDQFKALPRRTVATDIHCVTRWSKLDTTWEGVPIQAILELAA
                     VRPTATHVVSHAEQGYTANLPLSVLDDDDVLLADTFDGK"
BASE COUNT          300 a          622 c          600 g          257 t
ORIGIN      
        1 gcaaggccct caaggacgcc tacgggatcg acgtggccaa cgccaccaag ctgtccgcct
       61 gcgacacgcc gatggcccag gcgctcaagg gcaagaccat cgacgtggcc gagctgtgct
      121 cgacgcagcc tgacatcgcc gtcaatggtt gggtcgtcct cgaggacgac aagcagaccc
      181 agccggccga caacctcgcg ccgctcgtcc gcaacgacct gctcgcgaag ctcgccgaca
      241 agaacagctt cgagaacatc ctcaaccagg tctcggccgc gatggatacc gcgaccctga
      301 ccgacctcgg gaagcagatc gcggtggaca acaaggacgt ggccgaggtc gccaaggcct
      361 ggctccagag caagaacctg ttccagtagg cgtcgccgca cgccgacaac cgagcccccg
      421 gcaccgccgg gggctcgacc gtttcgggcc tactcggtcg ggcgccgcgc ggtgagcttg
      481 ggggagcgcc gcaggcgcat ccggtggagg aggtaccggg cgaccacccg cagcgtggac
      541 agcccgtaca cgatgctccg gcggagcccg accgacgacg cctcgtcgaa gtagcgcgtc
      601 gggacggcga tctcgccgat ccggtcggtc agcccggccg ccacgacctg ggcgatcagc
      661 tcctggtcga acacgaaatc gtcgctgttg agagcgtacg ggatcgtctc gagcaggtgc
      721 cggctgtagg cccgcaggcc ggtgtggtac tcggatagcc gcagcccgaa ggccaggttc
      781 tcgagctccg tcaggaaccg gttgctgacg tacttccagc ggggcatccc accggccagc
      841 ggatcgccca agaaccggct gcccagcatg aggtcgcgcg agccgtcggc gatcggggcg
      901 atcagggccg ggatccgcgt cgcgtcgtac tggtagtcgg ggtggagcat gaccacgatc
      961 tcggcgccgg ccgcgagtgc cgcgtcgtag caggtcttct ggttgccgcc atacccccgg
     1021 ttctcggggt ggatgatgac cacgaggccg agctggctcg cgatctcgac cgtctcgtcg
     1081 gccgacacgt cgtccacgag gatgatctgg tcgacgatct cgtgcgggat gtccgcgtac
     1141 gtccgctgca gcgtgcgcgc ggcgttgtag gccggcatga cgatgaccag ccggggccgc
     1201 ccgcccggga cgctcgtggc cggattcagg gcgtccagtg cgggcggcgt cttcacgccc
     1261 ggaacagtac cccatgcgac acgccggcca cggcgggcga ttccgccggc accccatcct
     1321 gtgggacgat aggcgcgcca cctacgagga tcacgaatgt tcgaacgtct cttcggcaat
     1381 cgcgaccagg atccggccat cgccgcccgc atcccgcccg gccagtaccg gaccgagaag
     1441 tttcccgtgc tgcactacgg ctcggtcccc cacaccgacc tggcgacgtg ggacttccgg
     1501 gtgtggggcg aggtcgactc gccgttcacc ctgacctggg accagttcaa ggcgctgccg
     1561 cgcaggacgg tcgccacgga tatccattgc gtgacccgct ggagcaagct cgacacgacc
     1621 tgggagggcg tgcccatcca ggcgatcctc gagctggcgg ccgtccggcc gacggcgacc
     1681 cacgtggtct cccacgccga acagggctac accgccaacc tgccgctgtc ggtcctcgac
     1741 gatgacgacg tgttgctcgc ggatacgttc gacggcaag
//
LOCUS       DATDDI010000607         1736 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_179696, whole genome shotgun sequence.
ACCESSION   DATDDI010000607 DATDDI010000000
VERSION     DATDDI010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179696"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1334
                     /locus_tag="VIU37_08695"
     CDS             <1..1334
                     /locus_tag="VIU37_08695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014073.1"
                     /translation="GRLMPTWAPRPADGAPVRVEGVPPWLQATSPRLSDGVIVVAASD
                     ADQSLGSEVADFYCDGVSDEAEINAAIAALPSRGGTIRLSDGRFNLAAPVIFGPATAA
                     KKIVVDGGGALLSVADGITGLKINQGSLTTVRGVHVYNLRIDGGSFANNIGVTFEDTN
                     WSGLHDVLIDNIGRGILMHANATNNFVEGISLDDVVIRTPGTYGLEYRRTNGTNSFGQ
                     HRYSGLYINAGAATGVLLPSGCSIYRCRLNMQVWIATGGIAYSFDGDADGATLRLAVE
                     GATGSTGNTALVLGANATNWDRADIDWYVTGTINTEFSISAGRDWAYRQGRHFKGHTQ
                     NTTSPLRVMNQTDSAARITFGNNGASGGRITFGNGSGTNDGFIERAGANVLAVGAAKL
                     RVASFKSQTKAGAPVDGDITGGAEDGDMVLDTTNSKIWFRVGGVWKGVVIA"
     gene            1536..>1736
                     /locus_tag="VIU37_08700"
     CDS             1536..>1736
                     /locus_tag="VIU37_08700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014074.1"
                     /translation="MDSFTQLPELQPPESRSQIERTFAGYQMWLARASPDQLRTELAR
                     INGLLETQSRTALTEVIARGTSG"
BASE COUNT          286 a          610 c          588 g          252 t
ORIGIN      
        1 gaggacgact gatgccgacg tgggcgccgc gcccagctga tggagctccg gtccgggtcg
       61 agggcgtccc gccctggctg caggccacca gcccgcggtt gtccgacggc gtgatcgtcg
      121 tcgccgccag cgacgccgat cagtcgctcg gcagcgaggt cgccgacttc tactgcgacg
      181 gcgtcagcga cgaggccgag atcaatgcgg cgatcgcggc actgccttcc cggggcggca
      241 cgatccggct atccgatggc cggttcaacc ttgccgcccc ggtcatcttc ggcccggcga
      301 ccgccgccaa gaagatcgtc gtcgatggtg gcggcgcgct gctgtcggtg gccgacggga
      361 tcaccggcct caagatcaac cagggctcac tgaccaccgt tcgcggcgtc catgtctaca
      421 acctgcggat cgacggcggc agcttcgcca acaacatcgg ggtcaccttc gaggacacca
      481 actggtcggg cctgcacgac gtcctgatcg acaacatcgg ccgcgggatc ctgatgcacg
      541 ccaacgcgac caacaacttc gtcgagggca tcagcctcga tgacgtggtc atccggacgc
      601 cgggcacata cggcctcgag taccgccgga ccaacggcac caacagcttc ggccagcacc
      661 gctacagcgg gctgtacatc aacgccggcg cggcgaccgg cgtgctcctg ccgtcaggct
      721 gctcgatcta tcgctgccgg ctgaacatgc aggtctggat cgccaccggc ggcatcgcct
      781 acagcttcga tggtgacgcc gacggcgcga cgctcaggct ggcggtcgag ggggcgacgg
      841 gctcgaccgg caacaccgcc ctggtcctcg gcgccaacgc gaccaactgg gacagggcgg
      901 acatcgactg gtacgtcacc ggcacgatca acaccgagtt cagcatctcg gccggccggg
      961 actgggccta ccggcagggc cgccatttca agggccacac ccagaacacg acctcgccgc
     1021 tgcgggtgat gaaccagacc gactccgccg cccggatcac gttcggcaac aacggtgcct
     1081 cgggtggccg gatcacgttc ggcaacggct cgggcaccaa cgacggcttc attgagcggg
     1141 cgggcgccaa cgtcctcgcc gtcggtgcgg ccaagctccg cgtggcctcg ttcaagagcc
     1201 agaccaaggc cggcgcgccg gtcgatggcg atatcactgg cggcgctgag gacggcgaca
     1261 tggtcctcga cacgaccaac agcaagatct ggttccgcgt cggcggcgtc tggaagggcg
     1321 tcgtcatcgc atgagcctcg aacgccggac ccgcgccgtg gcgagggccc agccaagcgg
     1381 gtcccggctg gccctcgccg tcctcgccgt cggtatcctc gccctcggcg ccggtttcgc
     1441 ctgggacctc gtggttcttg ccgcaaccgg cgccgcgatc gtcggttgga gcttccggcc
     1501 cgaggtcgag cgcctgtacc tggagggctt cagcgatgga ctcgttcacg cagctgccgg
     1561 agctgcagcc gccggagagc cggagccaga tcgagcggac gttcgccggc taccagatgt
     1621 ggctggcgag agcgagcccg gaccagctcc ggacggagct ggcgaggatc aacggcttgc
     1681 tcgagacgca gtcgaggacg gctttgaccg aggtgatcgc ccgcgggacc tccggg
//
LOCUS       DATDDI010000608         2356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_720598, whole genome shotgun sequence.
ACCESSION   DATDDI010000608 DATDDI010000000
VERSION     DATDDI010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_720598"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VIU37_08705"
     CDS             complement(<1..305)
                     /locus_tag="VIU37_08705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014075.1"
                     /translation="MTRQRIPDDVLAAAHARSRAREARDWSEADRLRAEIEAAGWKVV
                     DRGTDFALTPAVAPDVAEGDRIRYGSSRSVPSRLEEPPAGVATVVLVATDWPDDLARS
                     "
     gene            complement(337..1524)
                     /locus_tag="VIU37_08710"
     CDS             complement(337..1524)
                     /locus_tag="VIU37_08710"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6014076.1"
                     /translation="MTEDLDTGPAPRRTLRIALVAPPLLPIPPQRYAGTERVVAALAD
                     GLVARGHHVTLFASGDSTAGSETVAVLPSAAWSGRSTGDNAVFGMLAAMVALEQADRF
                     DVVHSHVDVMSLPLARQARVPVLTTFHARLDLPGLYEAVLAFGPAPLVAISESQRRWH
                     PNANWVATIPHGLPLRGMPFEAQPGDYLAVVGRATPEKGIAEAIEVATATSFPLRIAA
                     KALNPTELRYLDDHIRPAIGAGVHYLGEVGPEERDPLLAGARATLMLGAWPEPFGLVA
                     IESLATGTPVIARRAGALAEIVEHGVDGYLVDDLSEAQLAVNLVGDLDRARIRERAIA
                     RFSVERMVAAYERVYLDLVEARERQEAERPARRPSSVPPMVSVEPDTTPEPDELDASL
                     ASA"
     gene            1847..>2356
                     /locus_tag="VIU37_08715"
     CDS             1847..>2356
                     /locus_tag="VIU37_08715"
                     /inference="COORDINATES: protein motif:HMM:NF015592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014077.1"
                     /translation="MAAPTHRRRSADAPASESRPEPFSPPPLLAPASDRLLAYLGNGH
                     VGLRVGRVPPLGGLAIVNGFWGAHPKDGIPTFAPVPYPLAGDLSVDGVRASGVPDSVR
                     FISQRTDFATGELTSRFQVRVGDTVARAEVVTFCSRSDPALVLQELQVRTDRDADLVL
                     TASISTAEVP"
BASE COUNT          329 a          866 c          840 g          321 t
ORIGIN      
        1 gaccgcgcga ggtcgtccgg ccagtcggtg gcgacgagca ccacggtggc cacgccggcc
       61 ggcggctctt ccagccgcga cggcacgctc cgactcgagc cataacggat ccgatcgccc
      121 tcggcgacgt ccggggctac cgccggcgtc agcgcgaaat ctgtgccgcg atcgacgacc
      181 ttccagccgg cggcctcgat ctcggcccgc aggcggtccg cttcggacca gtcgcgcgcc
      241 tcgcgagccc gcgagcgagc atgcgccgcg gccaggacgt catccgggat tcgttggcgg
      301 gtcacccgca gagcatatcc gcgcgggtcg ccgccgctag gcggaggcga ggctggcgtc
      361 cagctcgtca ggctcgggcg tggtgtcggg ctcgacgctg accatcggcg gcacgctgga
      421 cggccgacga gccggacgct cggcctcctg gcgctcgcgc gcctccacga ggtcgaggta
      481 gacgcgctcg taggccgcga ccatccgttc gacgctgaac cgggcgatcg cccgctcgcg
      541 gatcctggct cggtcgagat cgcccaccag gttgacggcg agctgcgcct ccgacaggtc
      601 gtcgacgagg tagccgtcca cgccgtgctc gacgatctcg gcgagggcgc cggcccgcct
      661 ggcgatgacc ggtgttccgg tggccagcga ctcgatcgcc accaggccga acggctccgg
      721 ccaggcccca agcatcagcg tggcccgggc gccggcgagc aacgggtccc gctcctcggg
      781 tcctacctcg ccgaggtagt ggacgcccgc cccgatcgcg ggacggatgt ggtcgtcgag
      841 atatcgcagc tcggtcgggt tgagggcctt ggccgcgatg cggagcggga acgacgtggc
      901 ggtggcgacc tcgatggcct cggcgatccc cttctccggg gtcgcccgcc cgacgaccgc
      961 gaggtagtcg ccgggctgcg cctcgaacgg catcccgcga agcggcaggc catgcgggat
     1021 cgtcgcgacc caattcgcgt tcgggtgcca acgtcgctgg ctctcgctga tggcgaccag
     1081 cggggcagga ccgaaggcca ggacggcctc atacaggccc ggcaggtcca gcctggcatg
     1141 gaacgtggtc agcaccggaa cccgcgcctg gcgcgccagc ggaaggctca tcacgtcgac
     1201 gtgcgagtgc acgacgtcga atcggtcggc ctgttccagc gcgaccatcg ccgcgagcat
     1261 cccgaagacg gcattgtcgc cggtcgagcg tccgctccac gcggcggacg gcaggactgc
     1321 caccgtctcg ctgccagcgg tcgaatcgcc cgacgcgaac agggtcacgt ggtggccccg
     1381 ggccaccagg ccgtccgcga gggccgcgac cacccgttcg gtgccggcgt agcgctgggg
     1441 cgggatgggc agcagcggcg gggcgaccag ggcgatccgc agcgtgcggc gcggcgcggg
     1501 ccccgtgtcg agatcctcgg tcacttcgtc gcggtgacgt tccggaaggg ctgtggcgtg
     1561 cgggtgtggc atggacggga cctcgggttc gagtacatac gatagggcaa cctccgccat
     1621 ccggcacccg ggccgatcgg gacccatggc gaaccgagcc cggtctccag attgactccg
     1681 gccccgtcac agcggtggaa cgggcctggc tgccggcatt gcatttcagc gcacgaacgc
     1741 tccgcaccgt ccgacgcgcg aatgcaaggg ccggcggaac cgcggggctc ccgcgcgaaa
     1801 cccgaccacg ggcatcctgc atcgggaacg caactcgagg aggatcgtgg ccgcgccgac
     1861 acaccgccgc cgctcggcgg atgcgcctgc atccgaaagc cgtcccgaac cgttcagccc
     1921 gccgccgctc ctggcgcccg cgtccgaccg gctcctggca tacctcggga atgggcacgt
     1981 ggggctccgc gtgggtcggg tcccgccgct cggtggcctg gccatcgtca acggtttctg
     2041 gggcgcgcac cccaaggacg ggatcccgac cttcgcgccc gtcccctacc cgctcgccgg
     2101 cgatctcagc gtcgacggcg tccgagcctc cggcgtgccg gattccgtcc gcttcatctc
     2161 ccagcgcacc gacttcgcga ccggcgagct gacgagccgg ttccaggtcc gggtcggcga
     2221 cacggtcgcc cgtgccgagg tcgtgacgtt ctgcagccga tcggaccccg ccctcgtcct
     2281 ccaggaactc caggtccgaa cggaccgcga cgcggatctc gtgctcacgg cctcgatctc
     2341 gacggcggag gtgccg
//
LOCUS       DATDDI010000609         1986 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_242141, whole genome shotgun sequence.
ACCESSION   DATDDI010000609 DATDDI010000000
VERSION     DATDDI010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242141"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1329
                     /gene="gatB"
                     /locus_tag="VIU37_08720"
     CDS             <1..1329
                     /gene="gatB"
                     /locus_tag="VIU37_08720"
                     /inference="COORDINATES: protein motif:HMM:NF004012.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEY6014078.1"
                     /translation="GLPGALPTINARAVEHVLAAGAAIEATAPAATRWDRKNYFYPDL
                     PKGYQISQYQLPLASLGRLTFDTSAGPYTVTITRAHLEEDTAKLVHGVDPSGRKISLV
                     DFNRSGAPLMEIVTEPEIRTAEQARRYAEELQLLLRSIGASDADMERGQMRVEANVSL
                     RPRGTEPFGTRVEVKNMNSFRAVERAIDFEIARQAAILDAGETLVQETRGWSEERGET
                     YRMRIKETSDDYRYFPEPDLPPLHLDPAWLGAIRAGLPELPAARRTRYREQLGLSPYD
                     ASLLVADPDAARLFEETLGADASLDAKSVANWVVGEYLRLRNAASEPVSVVASQLAAI
                     VRAVLDGSITRAHGREVLAEHASGGASAASIITARGYRQISDAGAIDAAIERVLAEQP
                     AAVADFRAGKDQAIGFLVGQVMRATKGQANAALVQRAVRERLAADTGEGS"
     gene            1333..1605
                     /locus_tag="VIU37_08725"
     CDS             1333..1605
                     /locus_tag="VIU37_08725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014079.1"
                     /translation="MGVLNVVLWFAGVALIVIGYVRARAPWSRYQMLKAQDENVARYQ
                     RWRGGVQDDGKTGASVAMEVLRRQAQYAGLIAIAGFVLVFLGFLIR"
     gene            complement(1659..>1986)
                     /locus_tag="VIU37_08730"
     CDS             complement(1659..>1986)
                     /locus_tag="VIU37_08730"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY6014080.1"
                     /translation="FRYLVAQGFECVPVNPGETSVLGVPAFGTLAEAVAATGPFEMVD
                     VFRRSELCVPHAVEAVAAGARWLWLQLGVVNWEAAAIAHAAGLGVVMDRCTAIEWRRI
                     GGSRRR"
BASE COUNT          295 a          730 c          702 g          259 t
ORIGIN      
        1 gggctgccgg gcgccctgcc gaccatcaac gcgcgggccg tcgagcacgt gctggccgct
       61 ggtgccgcga tcgaggcgac cgcgccggcc gccacgcgct gggatcgcaa gaactacttc
      121 tacccggacc tgccgaaggg ctaccagatc agccagtacc agctcccgct ggcgtccctc
      181 ggcaggttga ccttcgacac gtccgccggg ccgtacacgg tgaccatcac ccgggcgcac
      241 ctcgaggagg acaccgcgaa gctcgtccac ggggtcgatc cctctggacg caagatcagc
      301 ctggtcgact tcaaccgctc cggggcgccg ctcatggaga tcgtgaccga gcccgagatc
      361 cggaccgccg agcaggcccg gcgctacgcc gaggagctcc agctgctgct ccggtcgatc
      421 ggcgcgtcgg acgccgacat ggagcgtggc cagatgcggg tcgaggccaa cgtctcgctc
      481 cggccgcgcg gcaccgagcc gttcgggacg cgcgtcgagg tcaagaacat gaactcgttc
      541 cgggcggtcg agcgggcgat cgacttcgag atcgctcgtc aggccgccat cctcgacgcc
      601 ggcgagaccc tggtccagga gacccgcggc tggtcggagg agcgcggcga gacctaccgg
      661 atgcggatca aggaaacctc ggatgactat cgttacttcc cagagcccga cctgccgccg
      721 ctccacctcg atccggcctg gctcggcgcc atcagggccg gcctgcccga gctcccggcg
      781 gcacgccgca cccgctaccg ggagcagctg ggcctgagcc cgtacgacgc gagcctgctc
      841 gtggccgacc ccgacgcggc caggctgttc gaggagacgc tgggggccga cgcctcgctc
      901 gatgccaagt cggtcgccaa ctgggtcgtc ggggagtacc tgcgcctgcg gaacgccgcg
      961 tccgagcccg tcagcgtcgt cgcgtcacag ctcgcggcga tcgtcagggc ggtcctggac
     1021 gggtccatca cgcgggcgca tggtcgcgag gtgctcgccg aacacgcatc gggcggcgcg
     1081 tcggccgcct cgatcatcac ggcgcgcggg tatcggcaga tctccgacgc gggcgcgatc
     1141 gatgccgcga tcgagcgggt gctggccgag cagcccgcgg cggtcgccga cttccgcgcc
     1201 ggcaaggacc aggcgatcgg cttcctcgtc ggccaggtga tgcgggccac caagggccag
     1261 gccaacgcgg ccctcgtcca gcgcgccgtc cgggaacggc tcgccgccga caccggcgaa
     1321 gggagctgag cgatgggtgt cctgaacgtc gtcctgtggt ttgccggcgt ggccctgatc
     1381 gtcatcggct atgtccgcgc ccgcgcgccg tggtcgcggt accagatgct caaggcgcag
     1441 gacgagaacg tcgcccgcta ccagcgctgg cgcggcgggg tccaggacga cggcaagacc
     1501 ggagcctccg tggcgatgga ggtgctgcgc cggcaggccc agtacgccgg gctgatcgcg
     1561 atcgccgggt tcgtgctggt cttcctcggg ttcctcattc gctgaacgcg accgggtcgc
     1621 ggccggcgcg ggccggccga cccgccggcg cccagctgct accttcgccg ggaccccccg
     1681 atccgccgcc actcaatcgc cgtgcagcgg tccatgacga cgcccaggcc ggccgcgtgc
     1741 gcgatcgcgg cagcctccca gttgacgacg ccgagctgga gccacagcca gcgggcaccg
     1801 gccgcgaccg cctcgacggc atgggggacg cacagctcgg agcggcggaa gacgtccacc
     1861 atctcgaacg gtccggtcgc ggccacggcc tcggccaggg tcccaaatgc cggcacgccc
     1921 aggaccgacg tttcgccggg attgaccggc acgcactcga acccctgcgc gaccaggtag
     1981 cggaag
//
LOCUS       DATDDI010000610         1826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_200523, whole genome shotgun sequence.
ACCESSION   DATDDI010000610 DATDDI010000000
VERSION     DATDDI010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200523"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..505
                     /locus_tag="VIU37_08735"
     CDS             56..505
                     /locus_tag="VIU37_08735"
                     /inference="COORDINATES: protein motif:HMM:NF020496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEY6014081.1"
                     /translation="MRFRTTILQTGKTAAGFEVPAEVVEALGSGKRPKVLVTIRGYTY
                     RNTVAVMGGVYMIGVAAEHRATSGVKGGDVVEVDLELDTAPREVAVPADFAAALAAEP
                     DAARTFEGLSYSNKSWHTYQIEDAKTDETRQRRIARSIAALREGRIR"
     gene            complement(563..>1826)
                     /locus_tag="VIU37_08740"
     CDS             complement(563..>1826)
                     /locus_tag="VIU37_08740"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEY6014082.1"
                     /translation="PSTRALAEQLGLSRGVVVEAYEQLVAEGYLAARPGGATRVCARS
                     VGLSAATAGMASAPEARFDFHYGRPDVTQFPRQAWIRALRRVLNEAPSDRLSYLDFRG
                     TPELREALAAYLNRVRGTAASADRTVITNGFAQGMAIVTQVIATTGGRRIAIEDPGQR
                     DAVRAARAHGLEPVAVPVDDEGIVVEALERADADAVIVTPAHQFPTGAVMSPERRAAL
                     VAWARTGDRVVLEDDYDAEYRYDREPIGALQGLAPEHVIYAGSASKTLAPGLRLGWLV
                     APRRFVEPIAVAKDASDRGSASLEQLAFADFLSRGDFDHHLRRMRPIYRARRDALLAA
                     LRRHLPDLQPVGASAGLHVMAWLPVGMDEAAVIERSAAAGVAVDGVAPYCLARRVGPG
                     GLLFGYGTLTERDIEAAVRLVAQAIRGG"
BASE COUNT          264 a          675 c          661 g          226 t
ORIGIN      
        1 ggctccttcg ggagccgctt cggcatttcc gggccgattc gcctggaggg atgacatgcg
       61 cttccgcacc accatcctgc agaccggcaa gaccgcggcc gggttcgagg tgccggccga
      121 ggtcgtggag gcgctcggct cgggcaagcg acccaaggtc ctggtcacga tccgcggcta
      181 cacctaccgc aacaccgtgg ccgtcatggg cggggtgtac atgatcgggg tcgccgccga
      241 gcatcgagcc acgagcggcg tcaagggcgg cgacgtggtc gaggtcgatc tcgagctcga
      301 caccgcaccg cgcgaggtgg ccgtgcccgc ggacttcgcg gctgcgctgg ccgccgagcc
      361 ggacgccgcg cgcacgttcg agggcctgtc ctacagcaac aagtcgtggc acacgtacca
      421 gatcgaggac gcgaagaccg acgagacgcg ccagcggcgg atcgcccgtt cgattgccgc
      481 gctgcgagag ggccggatcc gctaaccggg cgttcggaga tggccggcga ccaccgccgc
      541 cgccggggcc ggccacgcgg cgtcagccgc cgcggatcgc ctgggcaacc agccggaccg
      601 ccgcctcgat gtcgcgctcg gtgagcgtcc cgtagccgaa cagcaggcct cccggcccga
      661 cgcgacgcgc caggcagtat ggcgcgaccc catcgacggc aacaccggcc gcggcgctgc
      721 gctcgatcac ggctgcctcg tccatgccga ccggcaacca ggccatgacg tgcagtcccg
      781 ccgatgcccc gacgggttgc aggtccggca gatggcggcg cagggccgcc agcagggcat
      841 cccgccgggc ccggtagatc ggccgcattc ggcgcaggtg gtggtcgaag tcgccacggg
      901 acaggaagtc ggcgaacgcc agctgttcga ggctcgccga cccgcggtcc gaggcgtcct
      961 tggcaaccgc gatcggctcg acgaaccgcc gcggcgcgac cagccagccc aggcgcaagc
     1021 cgggagcgag cgtcttgctg gccgaaccgg catagatgac gtgctcgggc gcgagcccct
     1081 ggagcgcgcc gatcggctcg cggtcgtagc gatactccgc gtcgtagtcg tcctcgagca
     1141 cgacccggtc acccgtcctc gcccaagcca cgagggcagc ccgccgttct ggcgacatga
     1201 ccgccccggt cgggaactgg tgcgcgggcg tgacgatcac cgcgtcggcg tccgcccgct
     1261 cgagggcttc gaccacgatg ccctcgtcgt cgacgggcac cgccacgggc tcgagcccgt
     1321 gcgcccgggc cgcccgcacc gcatcccgct ggccgggatc ctcgatcgcg atccgccgtc
     1381 cgccggtcgt cgcgatcacc tgggtcacga tggccatgcc ctgggcgaac ccgttggtga
     1441 tcacggtccg gtcggcgctc gcggcggtcc cgcgcacccg gttgaggtag gcggcgagcg
     1501 cttcgcggag ctccggcgtg ccgcggaagt cgaggtagct gagccggtcg ctcggcgcct
     1561 cgttgagcac gcggcggagc gcccggatcc aggcctgccg tgggaactgg gtgacgtcgg
     1621 ggcgaccgta atggaagtcg aaccgagcct cgggtgcgga cgccatgccg gccgtcgcag
     1681 ccgacagccc gacggaccgg gcgcagaccc tggtcgcgcc accgggccga gccgccaggt
     1741 agccctcggc gaccagctgc tcgtacgcct cgaccaccac gccacgcgac aggcccagct
     1801 gctcggcgag cgcccgcgtc gagggg
//
LOCUS       DATDDI010000611         1501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_741361, whole genome shotgun sequence.
ACCESSION   DATDDI010000611 DATDDI010000000
VERSION     DATDDI010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741361"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VIU37_08745"
     CDS             complement(<1..463)
                     /locus_tag="VIU37_08745"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014083.1"
                     /translation="MALRLPFQPPLEPMLAKAVDELPTDDGWLFEPKWDGFRALVFRD
                     GDEVYTQSRDLKPLDRYFPELAAPLRVAIPERCVLDGEVVISHDGALDFEALLLRIHP
                     AESRVRMLAEASPASFVAWDLLALGDEDLRAVPQGERRARLETILGAAEPPI"
     gene            561..>1501
                     /locus_tag="VIU37_08750"
     CDS             561..>1501
                     /locus_tag="VIU37_08750"
                     /inference="COORDINATES: protein motif:HMM:NF025616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HEY6014084.1"
                     /translation="MRTIRLLIPIAVISLVVIACGSAASGLREGGTAVGDSAGANGYT
                     GAAVPPAASAAPAAPESQGGDTSTSVGAIGARDDAKIIRTGTIDLQVSDVPKALRTAR
                     DGIVAMGGYVGASNTSNDGDQPSAEITYRIPADRWEDALDLLRGLNGLTTKVVTEHTE
                     AVEVTGQVVDLEARIKNLQASEVALQGIAERATKIADVLEVQAQLTGVRGQIEELTAQ
                     LKDLNDRAGYATLTARFTVPIVATTVAAKGWDPGAAVDEAAASMISILQSLADAGIWF
                     LIVWLPILIVLGLLVAASAWVFRRIGPVRRGAILPPPA"
BASE COUNT          224 a          552 c          528 g          197 t
ORIGIN      
        1 ggatcggcgg ctcggccgcg ccgaggatcg tctcgaggcg cgcccgtcgc tcgccctgcg
       61 gcaccgcccg caggtcctcg tcgccgagcg cgagcaggtc ccacgccacg aagctcgccg
      121 gcgaagcctc ggccagcatg cggacgcgcg actcggccgg gtggatccgc agcagcagtg
      181 cctcgaagtc cagcgcgccg tcatgcgaga tcacgacctc accatcgagc acgcagcgct
      241 ccgggatggc gacccgcagc ggggcggcca gctccgggaa gtagcgatcc agcggcttca
      301 ggtcgcgcga ctgcgtgtag acctcgtcgc cgtcgcggaa gaccagcgcg cggaagccgt
      361 cccatttggg ctcgaacagc cagccgtcgt cggtgggcag ctcgtcgacc gccttcgcga
      421 gcatcggctc gagcggcggc tggaacggaa gccggagtgc cattgggcga gtgtacttcg
      481 cggaactcgc gggtcgggcc cggcgtctcc gcggtgccgc acgaccgttc ggtcggcgta
      541 agccctcgga gggccagcag atgcgaacca tccgtctcct catcccgatc gccgtgatct
      601 ccctggtggt catcgcctgc gggagcgcag cctctggcct tcgcgaaggc gggaccgccg
      661 tcggcgactc cgccggtgcg aacggctaca cgggtgccgc ggtccctccc gccgccagtg
      721 ccgccccggc agcgcccgag agccagggcg gcgacacgtc caccagcgtc ggtgccatcg
      781 gtgcccgcga cgacgcgaag atcatccgca ccggcacgat cgatctccag gtcagcgacg
      841 tgccgaaggc gctgcggacc gcgcgtgacg ggatcgtcgc gatgggcggc tacgtcgggg
      901 cgtccaacac gagcaacgac ggcgaccagc cgtccgccga gatcacctac cgcatccccg
      961 ccgatcgctg ggaggacgcc ctcgacctgc tgcgcgggct caacggcctg acgaccaagg
     1021 tcgtcaccga gcacaccgag gccgtcgagg tgaccggcca ggtcgtcgac ctcgaggccc
     1081 ggatcaagaa cctgcaggcg agcgaggtcg ccctccaggg gatcgccgaa cgcgccacga
     1141 agatcgccga cgtcctcgag gtccaggcgc agctgaccgg cgtgcgcggg cagatcgagg
     1201 agctgacggc ccagctcaag gacctcaacg atcgcgccgg ctacgcgacg ctgaccgccc
     1261 gcttcacggt gccgatcgtg gccacgacgg tcgcggccaa gggctgggac ccaggcgccg
     1321 ccgtcgacga ggccgcggcc agcatgatct ccatcctcca atcgctggcg gacgcgggga
     1381 tctggttcct gatcgtgtgg ctgccgatcc tgatcgtgct cggcctcttg gtggcggcga
     1441 gcgcctgggt gttccggcgg atcggcccgg ttcgccgcgg cgccatcctg cccccgccgg
     1501 c
//
LOCUS       DATDDI010000612         2191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_512646, whole genome shotgun sequence.
ACCESSION   DATDDI010000612 DATDDI010000000
VERSION     DATDDI010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512646"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VIU37_08755"
     CDS             <1..381
                     /locus_tag="VIU37_08755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014085.1"
                     /translation="SGTQTMVVIDKAVITLEPEVSVEAELEVACAQMHDAMPETSDSF
                     RVSSSRAPSDLLKLLRLPAFAGEDFRVKQFAVWTITDNPSRSGYVGLSSWVESGGPTK
                     AEFARIAELFDQAGIAAGHYRALR"
     gene            complement(409..>2191)
                     /locus_tag="VIU37_08760"
     CDS             complement(409..>2191)
                     /locus_tag="VIU37_08760"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014086.1"
                     /translation="RRLSIVTNAGGPGVIATDALISGGGELTDLTPETMERLNGVLPA
                     VWSHNNPIDIIGDAPPDRYAKALEIAAADPDTDGLLVILTPQAMTDPTATAKALAVYA
                     KIPGKPVLASWMGGTDVLEGSAILREAGIPTFAYPDTACVLFNHLWRYADNLRSLYET
                     PALPIAPERGEFREGVDDIIADVTAEGRTLLTEFESKKVLAAYGIPITDTELAHTPDE
                     AVIAADEMGYPVVAKLLSRTITHKTDVGGVCLNLRTPDAVREAFERIRTSVTKKAGAE
                     HFEGVTIQPMINWSGYELIVGSSPDPQFGPVLLFGMGGQLVEVFRDRALALPPLNTTL
                     AKRLIEHTTIAKALRGVRGRKPVDLDVLAALLVRFSELVAEQPRIAEIDINPLLASPE
                     RIIALDARVVLHPPTVPQRELPPLAIRPYPHAYIREINDDNGTPIVIRPIRPEDEPLL
                     ARFHGTLSEATVRARYGTDLALAERTAHERLTRICFVDYDREIALVAEAPQAEGSVVA
                     AVVRLSRIHATEAMELSLVVADAWQRRGIGRELLKSAIDVARTERASEVVARLAPENR
                     PMRTLLEEAGFSFEDRGALLLATLLTR"
BASE COUNT          303 a          730 c          813 g          345 t
ORIGIN      
        1 agcggcaccc agacgatggt cgtcatcgac aaggccgtga tcaccctcga gccggaggtg
       61 tcggtcgaag cggagctcga ggtcgcctgc gcccagatgc acgacgcgat gcccgaaacg
      121 agcgactcat tccgcgtctc ctcgagccgc gcgccgtcgg atctgctcaa gctcctgcgg
      181 ctcccggcgt tcgccggcga ggacttccgc gtcaagcagt tcgcggtctg gacgatcacc
      241 gacaacccgt cgcgatcggg ctacgtcggc ctcagctcat gggtcgagag cgggggcccg
      301 acgaaggctg agttcgcccg gatcgcggag ctgttcgacc aggccgggat cgccgccggc
      361 cactatcgag cgcttcggta gcggcgccgg agccggcgcc ggaccgggct acctcgtcag
      421 cagggtcgcc aggagcagcg cgccgcggtc ctcgaacgag aagccggcct cctcgagcag
      481 cgtccgcatc ggccggttct cgggcgcgag cctggcaacg acctcgctgg cgcgctctgt
      541 ccgcgcaacg tcaatcgccg acttgagcaa ctcccgtccg atcccgcgac gctgccacgc
      601 gtccgccacc acgagcgaca gctccatggc ctcggtcgcg tggatgcgcg acagccggac
      661 gaccgcggcg accacgctgc cttcggcttg cggcgcctcg gcgacgagcg cgatctcgcg
      721 gtcgtagtcg acgaagcaga tccgggtcag gcgctcgtgt gcggtccgtt cggccagggc
      781 gaggtccgtg ccgtatcgag cgcggacggt cgcctcggac agcgtcccgt ggaagcgggc
      841 gagcagcggc tcgtcctcgg ggcggatcgg ccggatgacg atcggcgtgc cgttgtcgtc
      901 gttgatctcg cgaatgtagg cgtgcggata gggccggatc gcgagcggcg gcagctcgcg
      961 ctgaggcacg gtcggcggat ggagcacgac ccgtgcgtcc agcgcgatga tccgttccgg
     1021 cgaggccagc agcgggttga tgtcgatctc ggcgatccgc ggctgctcgg ccacgagctc
     1081 gctgaaccgg accaggagcg cggcgagcac gtccaggtcg accggcttgc ggccgcggac
     1141 gccgcggagc gccttggcga tcgtggtgtg ctcgatcagg cgcttggcga gcgtggtgtt
     1201 gagcggcggc agcgccagcg cgcggtcgcg gaagacctcg accagctggc cgcccatccc
     1261 gaacagcagg accgggccga actgcgggtc ggggctgctg ccaacgatca gctcgtagcc
     1321 ggaccagttg atcatcggct ggatcgtcac gccctcgaag tgctcggcgc cggccttctt
     1381 ggtgaccgac gtgcggatgc gctcgaacgc ctcgcgcacc gcatcggggg tccgcaggtt
     1441 gaggcacacg ccacccacgt cggtcttgtg ggtgatcgtg cggctgagca gcttggcgac
     1501 gaccgggtag cccatctcgt cggcggcgat cacggcctcg tccggggtgt gggcgagctc
     1561 cgtgtcggtg atcgggatgc cgtaggcggc gaggaccttc ttgctctcga attcggtcag
     1621 gagcgtacgg ccctcggcgg tgacgtcggc gatgatgtcg tcgacgccct cgcggaactc
     1681 gccgcgctcc ggagcgatcg gcagggccgg cgtctcgtac agcgagcgca ggttgtccgc
     1741 gtagcgccag aggtggttga acaggacgca ggcggtgtcc gggtaggcga aggtggggat
     1801 gccggcttcg cgcaggatcg ccgagccctc caggacgtcc gttccgccca tccatgacgc
     1861 caggaccggc ttcccgggga tcttcgcgta caccgcgaga gccttggcgg tcgccgtggg
     1921 atcggtcatc gcctgtggcg tgaggatgac cagcaggccg tccgtgtcgg ggtcggccgc
     1981 ggcgatctcg agcgccttgg cgtagcggtc cggcggggcg tccccgatga tgtcgatcgg
     2041 gttgttgtgg ctccagaccg ccgggaggac gccgttgagg cgttccatgg tctccggcgt
     2101 caggtccgtc agttcgccgc cgccgctgat cagggcgtcg gtcgcgatca cgccgggtcc
     2161 gccggcgttg gtcacgatcg acagccggcg g
//
LOCUS       DATDDI010000613         2983 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_325329, whole genome shotgun sequence.
ACCESSION   DATDDI010000613 DATDDI010000000
VERSION     DATDDI010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2983
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325329"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VIU37_08765"
     CDS             <1..504
                     /locus_tag="VIU37_08765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014087.1"
                     /translation="PRKRTPPKPPSHLSRNITIGVIGLFVVLAAVGSASNREATVVGP
                     TAPPDAVASQDDADAAASESASPTPGSASLLSMKGTGPKTSDEFHASGTSVEVAYTYT
                     CPVEDSFTLNFYGTNGSPVLPDVIASEFGASGSTAVNEPLNDTTGPFTVEVDSPCAWT
                     VEVTGTP"
     gene            591..962
                     /locus_tag="VIU37_08770"
     CDS             591..962
                     /locus_tag="VIU37_08770"
                     /inference="COORDINATES: protein motif:HMM:NF040320.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014088.1"
                     /translation="MTTDITVGLVNQPGTLLRASDALGRAGVNIEGACGFVCDGQGRF
                     HVLVEDPRRARSALIDAGLEIHDERQVVAIAVENRPGSAATILRRIATAGVNIDLLYV
                     TADSRLVLGGDDIPALKAALG"
     gene            1293..2561
                     /locus_tag="VIU37_08775"
     CDS             1293..2561
                     /locus_tag="VIU37_08775"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY6014089.1"
                     /translation="MSHSRVPVPDRDRLRIAFLALGAAFFGIAILDRVVGLLIGFSSL
                     LLTLFLTWLLAFLIGPLVSALDRRLPLGRGLAVAVAYAGVVGAIALFIVAVAQIGAPQ
                     AIDLVGRTDQITVSIATLVGDTQRAVGIDPSTVDLAAFVENVQRETLPAAIRQLADQT
                     QGIAAGLASAFGTLFVIVVLSLYAVADPEAITSTITRIVPNRYADNLLLVQRTVGRAF
                     RGFLRTQVVLVLIQIGLTIVIGLVFGLPYIFLLAVSTGVLMFIPFFGPPLALVPVVLV
                     ALAFRPDVALLVIVVLVITQTILVNAIQPRLLREGVGLHPILVIVALLLGSQVAGLWG
                     AIFGIPFVAIVNLLLRYVIDTRAVNEVEGIDLKDAVAEIQAENPDIEVEDAVAIAADQ
                     AEAILEEDAAMEIPREVAGEGHPLGSEAGT"
     gene            complement(2594..>2983)
                     /locus_tag="VIU37_08780"
     CDS             complement(2594..>2983)
                     /locus_tag="VIU37_08780"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY6014090.1"
                     /translation="WPIWATVGHTAGMRVYWLCNVVGEPGAEATPFDPTAEEGWEDDL
                     DHPRSADELVEALASTFRLIERCLDRWTPETLAETVERRYAGNTQVHTLASIVQRLFS
                     HEAYHCGELSQTLGIHGLAQIDLWRAD"
BASE COUNT          436 a         1042 c         1018 g          487 t
ORIGIN      
        1 ccgcgcaagc ggaccccacc gaagccgccg tcgcacctgt cccggaacat cacgatcgga
       61 gtgatcgggc tgttcgtcgt tctggcggcg gtcggctcgg cctcgaaccg cgaggcaacc
      121 gtcgtcggcc cgacggcacc gccggacgcc gtcgcctcgc aggacgatgc cgatgccgca
      181 gcctctgaat ccgcttcgcc cacgcccggc agtgcgtcgc tgctgtcgat gaagggcacg
      241 gggccgaaga cctcggacga gttccacgcc agcggcacga gcgtcgaggt cgcctacacc
      301 tacacctgcc cggtagagga cagcttcacg ctgaacttct acggaacgaa tggcagcccg
      361 gtgctgccgg acgtcatcgc cagcgagttc ggcgcgagcg gatcgaccgc ggtgaacgaa
      421 ccgctcaacg acacgaccgg cccgttcacg gtcgaggtcg actcgccgtg cgcctggacg
      481 gtcgaggtga ccggcacgcc ctgagccgcg tccgcggtga ccacgcgacc cgggatcgcc
      541 cggggccggc gggtacgatg gcgtcgttcc gccccgccga ggagaccggg atgacgaccg
      601 atatcaccgt tggacttgtc aatcagccgg ggaccctgct gcgcgcgagc gacgcactcg
      661 gtcgagcggg cgtcaacatc gaaggggcgt gcgggttcgt ctgcgacggc cagggccgct
      721 tccacgtcct ggtcgaggac ccccggcggg cccgatcggc actgatcgac gcgggcctcg
      781 agatccacga tgagcgccag gtcgtggcaa tcgcggtcga gaaccggccg ggatcggcgg
      841 cgaccatcct gcgccggatc gcgacggccg gcgtcaacat cgacctgctc tacgtgacgg
      901 ccgacagccg gctcgtcctg ggtggggacg acattccggc gctcaaggcg gcgctcggct
      961 aggcccgacg cgacggccgg ccgccgcggg ccgcccggac gggccgcacc ctacttgcgc
     1021 cccgcgccca gggcgcgccg cgagaccgcg taaggcaagt ggcaagcacg ccggcgcccg
     1081 gccggtcgag tcgcgccgcg ctcgatctcc ggggggcgat ccgccgggag aggcacgtga
     1141 cgggctgtca tgaccatggg ccgtcgggac cgcagagttg cgatgcctcc agggcctgca
     1201 ggtccggcaa tgtgaccggc acggcccact tgaggctggc ggcgagttcg cctgaaccgc
     1261 cgctgttgcc gtgaccagct ggttggcgag aagtgagcca ctcgagagtc ccagttccgg
     1321 atcgggatcg cctgcgaatc gcattcctgg cgctgggcgc tgccttcttc ggcatcgcga
     1381 tcctggaccg ggtcgtcggg ttgctcatcg gcttcagctc gctgctgctg accctgttcc
     1441 tcacctggct gctcgccttc ctgatcgggc ccctggtgag cgccctcgat cggcggttgc
     1501 cgctcggccg tgggctggcc gtcgccgttg cctatgccgg ggtcgtgggt gccatcgccc
     1561 tgttcatcgt cgccgtcgcc cagatcggtg cgccgcaagc catcgacctc gtgggccgga
     1621 cggaccagat caccgtttcg atcgccacgc tcgtcggcga tacccagcgt gcggtcggca
     1681 tcgatccatc aacggtcgac ctcgccgcct tcgtcgagaa cgtccagcgc gagacgttgc
     1741 cggccgcgat ccgacagctc gccgaccaga cccagggcat cgcggcgggc ctcgcatcgg
     1801 ccttcgggac gttgttcgtg atcgtggtcc tgtccctgta cgccgtcgcc gatccggagg
     1861 ccatcaccag cacgatcacc cggatcgtac ccaaccgcta cgccgacaac cttctcctcg
     1921 tccagcgcac ggtgggacgc gcgtttcgtg ggttcctccg tactcaggtg gtgctggtgc
     1981 tgatccagat cgggttgacc atcgtcatcg gcctggtctt cggcctgcca tacatcttcc
     2041 tcctggcggt cagtaccggg gtcctgatgt tcatcccgtt cttcgggccc ccgctcgcgc
     2101 tggtcccggt cgtcctcgtc gcgctcgcct tccggccgga cgtggccctg ctcgtcatcg
     2161 tcgtcctggt gatcacgcag acgatcctgg tcaacgccat ccagcccagg ttgctgcgcg
     2221 agggcgtggg tctccacccc atcctggtca tcgtggcact gctcctcggc tcccaggtcg
     2281 ctggactgtg gggggcgatc ttcgggatcc cgttcgtggc catcgtcaac ctgttgctgc
     2341 ggtacgtcat cgacacgcgg gccgtcaacg aggtggaagg catcgacctg aaggacgccg
     2401 tcgcggagat ccaggcggag aacccggaca tcgaggtcga ggacgcggtg gcgattgccg
     2461 ccgatcaagc ggaggcaatc ctcgaggagg acgccgcgat ggagatcccg cgagaggtag
     2521 cgggagaggg acacccgctc ggatcggaag ccgggacgta agcgttccgc agcgaaccag
     2581 cgtgacggtc tggtcagtcc gctcgccaga gatcgatctg ggcgagcccg tggatgccca
     2641 gcgtctgaga cagctccccg cagtggtagg cctcgtggga gaacaagcgc tgcacgatcg
     2701 atgcgagcgt gtggacctgc gtgttcccgg cgtacctgcg ctcgacggtt tcggcgagcg
     2761 tctccggcgt ccagcgatcg aggcagcgtt cgatgaggcg aaaggtcgag gcgagcgcct
     2821 ccaccagctc gtcggcgctg cgagggtgat cgaggtcgtc ctcccagccc tcctcggccg
     2881 tgggatcgaa cggggtcgcc tcggcgcccg gttcaccgac cacattgcac agccagtaca
     2941 cccgcatgcc ggcggtgtgt ccgaccgtgg cccagatcgg cca
//
LOCUS       DATDDI010000614         4102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_346284, whole genome shotgun sequence.
ACCESSION   DATDDI010000614 DATDDI010000000
VERSION     DATDDI010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346284"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1513)
                     /locus_tag="VIU37_08785"
     CDS             complement(<1..1513)
                     /locus_tag="VIU37_08785"
                     /inference="COORDINATES: protein motif:HMM:NF024994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY6014091.1"
                     /translation="MIEPASVAGTARTIDLRPLFAPRSVAVVGASPRSWIAETVRDNL
                     RVMGSATRCHFVNPKYTELHGQPCHPSLEELPERPDVAIVALNPLRAASVTLAAAAAG
                     VPAVIIPGGGVVEGGEAAAAMQAEVARIARDHGLALVGPNCMGVIDLTSNAATYIGDV
                     SPYLPRGGVAGIAQSGSVTDAFVHSGSRVGFSRIVSCGSEVVLDLCDYLAYCLDDPQT
                     TSVILFVEGFKRPERFLALADRALELGKPIMAVKVGRSAQARTAAIAHTGSLAGEARV
                     TDAALDAAGVIRCRDLDELLEAAELVEGLRRTGRRVRRGRTGVVTVSTGEGSLIADLA
                     PSTGVDLPPIPDAARSQILAALPTMGYVGNPLDPWGAADPATAYRAAFEAMAGSGAYD
                     VLALVHDFPYRSLPSEVATANEVVVQLLAATRDRPQILPVYVSLTSGEPPPETKAMLD
                     ADGDGAPLLRGAVEAFRAIAGLATWEGRRERRLATGPWRAAWAAIAADRTSFGA"
     gene            complement(1510..2685)
                     /locus_tag="VIU37_08790"
     CDS             complement(1510..2685)
                     /locus_tag="VIU37_08790"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6014092.1"
                     /translation="MDFSLSPAQLELQARARAFVRDVLQPREVEFERAGGHVPRGWGR
                     PIREAAIEARLQGGSLPREVGGQGWSVIEQVLVHEQLGQSTGGLWSYIPGAYNVLTHA
                     DADQRRRYLEPSLRGERTGSYAITEDGAGSDARSIRATAVRDAATGDYLLNGEKWFVT
                     GPDDTDFMIFHGNVVDGDVRRPTLFLVDYDTPGLEIQHDPDYTHTFADRHPQFVLRDV
                     RVPASAILGGIGRADELTNEWFVEERIHIGARCSGAMERLLELAVEWATERVQFGERI
                     FDFQGVSFPLADSAADAAAARLLTRQCAWLADSGADRKVVHAKASVAKLFASEAAYRC
                     ADRVVQVFGGRGYMREYAPERFLRELRVDRIWEGTSEIQRLVIARALEKRGVDRVVG"
     gene            complement(2823..>4102)
                     /locus_tag="VIU37_08795"
     CDS             complement(2823..>4102)
                     /locus_tag="VIU37_08795"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6014093.1"
                     /translation="SAFEVTRKLPAYERGRILREISAGIRDRREELGRLIATEAGKPI
                     RDALVEVDRASLTFRLGGEEAERMTGEVIPLDLLPSSKDRVGITRRFPIGPIAGISPF
                     NFPLNLAAHKIAPAIASGNPIVLKPPSKDPLTMLAVAEIIEAAGVPAGSVSILPMTRE
                     LGDRMVADERFKLLTFTGSPSVGWRMKERAGKKKVVLELGGNAGVIIDKSANLDWAVK
                     RCLVGAFSYAGQVCISVQRMVIHEDVWDEFLGRFVAGAAALRVGDPLDAATDLGPMVD
                     ATASGRTQRWVDEAVALGGKLLLGGKADGTFFPPTVLTDVPLTAQVCSNEAFAPLVVA
                     FPFRDLDEAIARVNDSMFGLQTGVFTNDLAGAFRAFGELEVGGVIVNDVPTYRIDHMP
                     YGGVKDSGLGREGLRWAIEDMTEVRIMVLAQPA"
BASE COUNT          585 a         1482 c         1486 g          549 t
ORIGIN      
        1 cggccccgaa cgaggtccgg tcggcggcga tggccgccca ggccgctcgc caggggcccg
       61 tcgcgagtcg ccgctcgcgc cggccctccc aggtggcgag cccggcgatc gcccggaacg
      121 cctccacggc cccgcgcagc aacggagcac cgtcgccgtc tgcgtcgagc atggccttgg
      181 tctcgggcgg cggctcgccc gacgtgagcg acacgtacac gggaaggatc tgcggccggt
      241 cgcgcgtggc cgccagtagc tggaccacga cctcgttggc ggtcgccacc tcggacggca
      301 gcgaccggta cgggaagtcg tggacgagcg cgagcacgtc gtaggcaccc gaacccgcca
      361 tcgcctcgaa ggcggcgcgg taggcggtcg ccggatccgc cgcgccccac ggatcgagtg
      421 ggttcccgac gtagcccatc gtcggcagcg ccgcgaggat ctgcgaccgc gccgcgtcgg
      481 ggatcggcgg caggtcgacc ccggtcgatg gtgccaggtc ggcgatcagc gagccctcac
      541 cggtcgagac cgtcacgacg ccggtccgcc cacgtcgcac ccgccggccg gtccgccgga
      601 gtccctcgac gagctcggcc gcctcgagca gctcgtcgag gtcccgacag cggatgacgc
      661 ccgccgcgtc gagcgcggcg tcggtcaccc gggcctcccc cgcgagcgag ccggtgtggg
      721 cgattgcggc ggttctcgcc tgtgcgctgc gcccgacctt gacggccatg atcggcttgc
      781 cgagctcgag cgcgcggtcg gcgagcgcga ggaaccgctc gggtcgcttg aacccctcga
      841 cgaacaggat cacggaggtc gtctgcgggt cgtcgaggca gtaggccagg tagtcgcaga
      901 ggtcgaggac gacctcggac ccgcagctga cgatccgcga gaacccgacg cgcgaccccg
      961 agtggacgaa cgcgtccgtc accgagcccg actgggcgat cccggcgacc ccgccccggg
     1021 gcaggtacgg cgagacgtcg ccgatgtagg tggccgcatt cgaggtgagg tcgatcacgc
     1081 ccatgcagtt ggggccgacc agggcgagcc cgtggtccct ggcgatccgc gccacctcgg
     1141 cttgcatcgc cgcggccgcc tcgccccctt cgacgacgcc gccacccggg atgatcacgg
     1201 ccgggacgcc ggccgccgcg gccgccaggg tcacggaggc ggcacgcaac gggttgagcg
     1261 ccacgatcgc gacgtcgggt cgctcgggca gctcctcgag cgacgggtgg cagggttggc
     1321 cgtggagctc ggtgtacttc gggttgacga agtggcagcg cgtcgcgctg cccatgaccc
     1381 ggaggttgtc gcggaccgtc tcggcgatcc acgagcgggg cgacgctccg acgacggcga
     1441 cgcttcgcgg cgcgaagagc ggtcgcaggt cgatcgtgcg agcggtcccg gcgacggagg
     1501 ccggctcgat catccgacga cccggtcgac gccgcgcttc tcgagcgctc gggcgatgac
     1561 cagccgctgg atctcggacg tcccctccca gatccggtcg acccgcagct cgcggaggaa
     1621 gcgctcgggg gcgtactcgc gcatgtagcc gcggcccccg aacacctgga cgacccggtc
     1681 ggcacaacga taggcggcct ccgaggcgaa cagcttggcg accgacgcct tggcatggac
     1741 caccttgcgg tcggccccgc tgtcggccag ccacgcgcac tgccgcgtga gcagccgcgc
     1801 ggccgcggcg tcggcggcgg agtcggcgag cgggaagctg acgccctgga agtcgaagat
     1861 gcgctcgccg aactggacgc gctccgtggc ccattcgacc gccagctcga gcagacgctc
     1921 catcgccccg gagcagcggg cgccgatatg gatccgctcc tccacgaacc actcgttggt
     1981 cagctcgtcg gcgcggccga tcccgccgag gatcgccgag gccggcacgc ggacgtcgcg
     2041 caggacgaac tggggatgcc ggtcggcgaa ggtgtgcgtg tagtccggat cgtgctggat
     2101 ctccaggccc ggggtgtcgt agtcgacgag gaacaacgtg ggccggcgga cgtcaccgtc
     2161 gacgacattg ccgtggaaga tcatgaagtc ggtgtcgtcc gggccggtca cgaaccactt
     2221 ctcgccgttg aggaggtagt cgccggtggc cgcgtcgcgg acggccgtgg cccggatcga
     2281 gcgggcgtcc gagccggcgc cgtcctccgt gatcgcgtaa ctccccgtgc gctcgccacg
     2341 gagcgagggt tccaggtagc gtcgtcgctg gtcggcgtcg gcgtgggtca ggacgttgta
     2401 ggcgcccggg atgtacgacc acaggccgcc ggtcgactgc cccagctgct cgtggacgag
     2461 gacctgttcg atcaccgacc agccctgccc gccgacctcg cggggcagcg acccgccctg
     2521 caggcgagcc tcgatcgcgg cttcgcggat cggccgaccc cagccgcgcg ggacgtggcc
     2581 gccggcccgc tcgaactcga cctcgcgagg ctgcagcacg tcgcggacga aggcgcgtgc
     2641 ccgtgcctgc agctcgagct gggccgggct caggctgaag tccatgccgg aaggatgccc
     2701 caggcgatgc gacgcacggc cgtcacgtcg cggggcccgg gacgggccgt ggcgcggaat
     2761 gatgtcggtg agcgggggcc cggcgccggc agcctccccg ggcgcctccc ggcgccggcg
     2821 gctcaggccg gctgagccag caccatgatc cggacctcgg tcatgtcctc gatcgcccag
     2881 cgcaggcctt cgcgcccgag gccggagtcc ttcacgccgc cgtagggcat gtggtcgatc
     2941 cggtaggtcg gcacgtcgtt gacgatcacg ccgcccacct cgagctcgcc gaacgcgcgg
     3001 aacgcgccgg ccaggtcatt ggtgaagacg ccggtctgca gcccgaacat cgagtcgttg
     3061 accctggcga tcgcctcgtc gaggtcgcgg aacgggaacg caacgacgag cggcgcgaag
     3121 gcctcgttcg agcagacctg ggcggtcagc ggcacgtcgg tcagcacggt cggcgggaag
     3181 aacgtcccgt ccgccttccc gccgagcagg agcttcccgc cgagcgcgac cgcctcgtcg
     3241 acccagcgct gcgtccggcc cgaagccgtc gcgtcgacca tcggcccgag gtcggtcgcc
     3301 gcgtcgagcg ggtcgccgac acgcagcgcc gccgcgccgg ccacgaaccg tccgaggaac
     3361 tcgtcccaga cgtcctcgtg gatgaccatc cgctgcacgc tgatgcagac ctgcccggcg
     3421 tagctgaagg cgccgaccag gcaacgcttg acggcccagt ccaggttggc gctcttgtcg
     3481 atgatcacgc cggcattgcc gccgagctcg agcacgacct tcttcttgcc ggctcgttcc
     3541 ttcattcgcc agccgaccga gggcgagccg gtgaacgtca gcagcttgaa ccgctcgtcg
     3601 gccaccatcc ggtcgcccag ctcgcgcgtc atcggcagga tcgagaccga gccggccgga
     3661 accccggccg cctcgatgat ctcggccacg gccagcatcg tgagcggatc cttggacggc
     3721 ggcttgagga cgatcgggtt gcccgaggcg atcgccgggg cgatcttgtg ggcggccagg
     3781 ttgagcggga agttgaacgg gctgatgccg gcgatcgggc cgatcgggaa ccgccgggtg
     3841 atcccgaccc ggtccttcga gctcggcagc agatcgagcg ggatgacctc gcccgtcatc
     3901 cgctcggctt cctcaccgcc gaggcggaaa gtgaggctcg cccggtccac ctcgaccagc
     3961 gcgtcacgga tcggcttgcc ggcctcggtg gcgatcagcc gtccgagctc ctcgcgccga
     4021 tcgcggatcc cggcgctgat ctcgcgcagg atccggccgc gttcgtaggc cggcagcttg
     4081 cgggtcacct cgaacgccga ga
//
LOCUS       DATDDI010000615         1794 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_449861, whole genome shotgun sequence.
ACCESSION   DATDDI010000615 DATDDI010000000
VERSION     DATDDI010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449861"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1794
                     /locus_tag="VIU37_08800"
     CDS             <1..>1794
                     /locus_tag="VIU37_08800"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY6014094.1"
                     /translation="VISPDSMRADLVQMKQFGFNAVRTSHYPNDPAFLDLADELGLYV
                     IDEADIESHAFQSTLCDDSRYLDQWVTRVSRMAERDKNHASVILWSLGNESGSGANHE
                     AAAAWLRAYDPSRPLHYEGAIRYDWTSDQDLSDLTCPMYPPIADIVGHAMSGLQRHPL
                     IMCEYSHAMGNSNGTLAEYWDAIESTPGLQGGFIWEWWDHGLVQRLPDGTRRWAYGGD
                     FGETPHDGNFVADGMNWPDRRPKPAMWEHKRLAAPAALSGDPGELLAGVVRLTNRQDF
                     TDLAWLRASYELAVDGAAIAGGEVELPALGPGERARISLPGWLAPPIDGDAEAWLTFR
                     LRTAGELPWAPAGFEVCALQLPVGQGSAPADRRSSGAPVELDEQGRLRHPLLAAPPAL
                     SLWRAPTDNDRIGGMAAAWASAGLDRLERRLLSIEREDAATVVRSEVRTGAGIGVVHE
                     VRYAPLAAGGVLVDETVTVPDELSDLARVGTVLEVVPGLEQLEWFGSGPYETCPDRKR
                     GGLVGIWRSTVTDQYVPYIRPQENGGHADVRWLRLSDGGTRSVRIGLGRPGQVSATHF
                     RASDLAAATHDVELAPRAETVVHLDAAHRGLG"
BASE COUNT          250 a          629 c          660 g          255 t
ORIGIN      
        1 ggtcatctcg cccgactcga tgcgcgccga cctggtccag atgaagcagt tcgggttcaa
       61 cgcggtgcgg acctcgcact acccgaacga cccggccttc ctggacctcg ccgacgagct
      121 gggcctgtac gtcatcgacg aggccgacat cgagtcccac gccttccaga gcacgttgtg
      181 cgacgactcg cgctacctcg accaatgggt gacccgggtg tcgcggatgg ccgagcggga
      241 caagaaccac gcctcggtga tcctctggtc gctcggcaac gagtccggga gcggcgcgaa
      301 ccacgaggcg gcggccgcct ggctgcgcgc ctacgacccg agccggccgc tccactacga
      361 gggcgcgatc cgctacgact ggacgagcga ccaggacctc agcgacctca cctgcccgat
      421 gtacccgccg atcgcggaca tcgtcgggca cgcgatgtcg ggcctccagc gccatccgct
      481 gatcatgtgc gagtactccc acgcgatggg taacagcaac gggacgctgg cggagtactg
      541 ggacgcgatc gaatcgaccc ccgggctcca gggcgggttc atctgggagt ggtgggatca
      601 cggtctcgtc cagcggctgc ccgacgggac gcgacgctgg gcctatggcg gcgacttcgg
      661 cgaaaccccg cacgacggca acttcgtcgc ggacgggatg aactggccgg atcgccggcc
      721 gaagccggcg atgtgggagc acaagcggct ggccgcgccg gccgcgctgt ccggcgaccc
      781 cggcgagctg ctcgcgggcg tcgtgcggct caccaaccgg caggacttca ccgatctcgc
      841 gtggctgcgt gccagctacg agctcgcggt cgacggtgcg gcgatcgcgg gcggcgaggt
      901 cgagctgccg gcgctcggac cgggcgagcg tgcccggatc agcctcccag gttggctggc
      961 gccgccgatc gatggcgacg cggaggcgtg gctcacgttc cggctccgga cggccggcga
     1021 gctgccgtgg gcgccggccg gcttcgaggt ctgcgcgctc cagttgccgg tcgggcaggg
     1081 gagcgccccc gccgatcggc ggtcatcggg agcgcccgtc gagctcgacg agcagggccg
     1141 gcttcgacat ccgctcctgg cggcaccgcc ggccctctcc ctgtggcgcg ccccgaccga
     1201 caacgatcgg attggcggca tggccgccgc ctgggcgtcg gcggggctcg atcgcctgga
     1261 acgccgattg ctgtcgatcg agcgggagga cgcggccacg gtcgtccgca gcgaggtgcg
     1321 gaccggtgcg gggatcggcg tcgtgcatga ggtccggtac gcgccgctgg cagccggcgg
     1381 cgtgctcgtc gatgagaccg tgaccgtccc cgacgaactg tccgacctgg cacgcgtcgg
     1441 aacggtcctg gaggtcgtgc ccgggctcga gcagctggag tggttcgggt ccggtccgta
     1501 cgagacgtgc cccgaccgca agcgcggcgg gctcgtcggc atctggcgat cgaccgtgac
     1561 ggatcagtac gtcccgtaca tccgtcccca ggagaacggc ggtcacgcgg acgtccgttg
     1621 gctgcgactg tcggacggtg ggacgcggtc ggtgcggatc ggccttggtc gtccgggcca
     1681 ggtctctgcg acccacttcc gggcgtcgga cctcgcggcc gccacgcacg acgtcgagct
     1741 cgccccgcga gccgagacgg tcgtccatct cgacgccgcg catcggggcc tcgg
//
LOCUS       DATDDI010000616         1694 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_96591, whole genome shotgun sequence.
ACCESSION   DATDDI010000616 DATDDI010000000
VERSION     DATDDI010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96591"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..718)
                     /locus_tag="VIU37_08805"
     CDS             complement(<1..718)
                     /locus_tag="VIU37_08805"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292873.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the alpha chain is a
                     catalytic subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEY6014095.1"
                     /translation="MAIRSDEIVNIIKSAIDTFDAQAETRTVGTVVEVGDGIAQVYGL
                     ENALASELLEFPGGVMGMALNLEEETVGAVILGDPRAIKEGDTVKTTGRVVEVPVGEA
                     LLGRVVDPLGIPLDGKGDIPRTKTRPVERIAPGVITRKRVDTPVQTGIKAVDALIPVG
                     RGQRELIIGDRQTGKTALALDAIINQKGKDLICIYVAIGQKKAAVARNIAVLEKAGAM
                     EHTVVVMASADEPAAMLYIAP"
     gene            complement(745..1296)
                     /locus_tag="VIU37_08810"
     CDS             complement(745..1296)
                     /locus_tag="VIU37_08810"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004402.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEY6014096.1"
                     /translation="MARPTVAARRYAEAAFQLASRDGALDAWADGLDFAAALLADQRI
                     AAEVNNPARPYGERLATLERLLEGRAPEGVLKLAGLLAQRGRGDRMPNVAAEYRRLLD
                     RARGNVVASVTSAAPLTAEETEAVRAWVGRTTGKTVDLTATVDASLIGGLTVRVGDTL
                     MDASVRGRLDRLRTDLLSGARAR"
     gene            complement(1296..>1694)
                     /gene="atpF"
                     /locus_tag="VIU37_08815"
     CDS             complement(1296..>1694)
                     /gene="atpF"
                     /locus_tag="VIU37_08815"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEY6014097.1"
                     /translation="ERIEQGLKDAEQARADRENAEQERLAALTEARREANDILARAQK
                     VAQETRDADIAATRTELERVRARASEEIEAEKSRALAELRAEVTDIALAAAGKVVNET
                     MTGDRQRRLVEEFLTEVGAPGATGGSGKAS"
BASE COUNT          195 a          600 c          619 g          280 t
ORIGIN      
        1 atggggcaat gtacagcatg gcggctggct catctgccga agccatcacc accaccgtgt
       61 gctccatcgc tcccgctttt tccagcaccg cgatattgcg cgccacagcg gctttcttct
      121 ggccaatggc cacatagatg cagatcaggt ctttcccttt ttggttgata atcgcgtcga
      181 gcgccagtgc cgtcttgccc gtctggcggt cgccgatgat cagctcgcgc tggccgcgac
      241 cgaccgggat cagcgcgtcg acggccttga tgcccgtctg gaccggcgtg tccacgcgct
      301 tgcgggtgat cacgccgggg gcgatgcgct cgaccggccg cgtcttcgtc cgcgggatgt
      361 cgcccttgcc gtcgagcggg atgccgagcg ggtccacgac ccggcccagg agcgcctcgc
      421 cgacgggcac ctcgacgacg cggccggtcg tcttgacggt gtcgccttcc ttgatggcgc
      481 gcggatcgcc gaggatgacc gcgccgaccg tctcctcctc gaggttgagg gccatgccca
      541 tgaccccgcc cgggaactcg aggagctcgg aggcgagggc gttctcgagg ccgtagacct
      601 gggcgatgcc gtcgccgacc tcgacgaccg tcccgacggt gcgggtctcg gcctgggcgt
      661 cgaacgtgtc gatcgccgac ttgatgatgt tgacgatctc gtcggagcgg atggccatcg
      721 gttctcctgg gttcggtcgg tcggtcagcg ggcgcgagcg cccgagagga ggtcggtgcg
      781 gaggcggtcg aggcggccgc ggacgctggc gtccatgagc gtgtcgccga cacggacggt
      841 cagcccgccg atcagcgatg cgtcgacggt cgcggtcagg tcgacagtct tgccggtcgt
      901 ccggccgacc caggcccgga cggcctcggt ctcctcggcg gtgagcggcg ccgcgctcgt
      961 gacgctggcg acgacgttgc cacgcgcccg atcgaggagg cggcggtact cggcggcgac
     1021 gttcggcatg cggtcgcccc ggccgcgctg ggcaagcagc ccggcgagct tgaggacgcc
     1081 ctccggtgcg cgaccctcga gcagccgctc cagggtggcc aggcgctcgc cgtagggccg
     1141 ggcagggttg ttcacctcgg cggcgatccg ctggtcggcc aggagggcgg cggcgaagtc
     1201 gagcccgtcg gcccacgcgt cgagcgcgcc gtcgcgcgag gcgagctgga aggctgcctc
     1261 ggcgtagcgg cgtgcggcga cggtgggtcg agccatcagg aggccttgcc gctcccgccg
     1321 gtggcgccgg gggccccgac ctcggtcagg aactcctcga cgagccggcg ctggcggtcg
     1381 ccggtcatcg tctcgttgac gaccttgccg gccgccgcga gcgcgatgtc ggtcacctcc
     1441 gcccgaagct ccgccagggc ccgggacttc tccgcctcga tctcctcgga cgctcgggcg
     1501 cggacgcgct cgagctccgt tcgcgtcgcg gcgatgtcgg cgtcgcgggt ctcctgggcg
     1561 accttctggg cccgagcgag gatgtcgttc gcctcgcgcc gcgcctcggt cagcgccgcc
     1621 aggcgctcct gctcggcgtt ctcgcgatcg gcgcgcgcct gctcggcgtc cttcaggccc
     1681 tgctcgatcc gctc
//
LOCUS       DATDDI010000617         3454 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_138341, whole genome shotgun sequence.
ACCESSION   DATDDI010000617 DATDDI010000000
VERSION     DATDDI010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138341"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..924
                     /locus_tag="VIU37_08820"
     CDS             <1..924
                     /locus_tag="VIU37_08820"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY6014098.1"
                     /translation="DGGIDRAGGFAAPGPDRGVARFVSPELTTARLEAPLQRAGETIG
                     LLLVGSRRERGFEVDEVETLSSLANQAAIAIENARLQARLRELAVDAERERIAREMHD
                     GLAQVLGYVNTKSQAIEELLVAGRTGEARGLLAELAAAARSIYVDVREAILGLRSPVP
                     PGVGLVASVEDYAARFADAAKIAVRVDATEAARRLDLTPDVEAQVFRIVQEALTNVRK
                     HSGAGRAEISFTVGDDRLEVVVLDDGHGLGGVGGLGSPDLPHYGIEAMRERAASIGAT
                     VDWTNPDGGGCRVHLSVAGAVAVGSAGTAAT"
     gene            924..1565
                     /locus_tag="VIU37_08825"
     CDS             924..1565
                     /locus_tag="VIU37_08825"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014099.1"
                     /translation="MRIVLADDHALFRDGVSSLLQAWGHDVVGRASNGVEAVELALRL
                     APDLVLMDVRMPGRSGVEATREIAAARPEIPIVMLTVSEDEDDLFAAIQSGARGYLLK
                     NLEAHQLRAMIDTVARGEAAITPATAARIIRHLSTLNAPAEESTPDRLTARELDVLRL
                     VTAGRHNKEIAAELGISENTTKYHLRNILEKLHAESRTEVAMRALREGLVDPE"
     gene            1694..>3454
                     /locus_tag="VIU37_08830"
     CDS             1694..>3454
                     /locus_tag="VIU37_08830"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014100.1"
                     /translation="MGYRVDIDHTGCINCGICMDTCPVEALDMSRPQVPGIETAGFGL
                     PQPWMMEHPIQVGECIGCGICIGECPVLVMTLVAEPTPTVLAPRQGPIERPVAASAGA
                     APWLPLATVTREVLKREHPSPWGDLLHWETASRDQAWQVWRSMKTQGRTVPIAPCQAA
                     CPAGTDAGRYVGLIGAQRYDDAYAVAAEVNPFPSVCGWICTAPCESVCRRGVLDEPIA
                     IRTLKRFAAEHGDLPPVDPPATRRAEKVGIVGGGPAGMSAAYYLARLGYPVTVFEAMP
                     VPGGMMAIGIPSYRLPRDVLQAEIARIVGLGVDLRLNAAMGRDFTLGDLESQGYRAVF
                     LATGASKSRRLGVPGDDVQGVVPATLFLKRVNLGEEPRLTGPAVVVGGGSTAMDAARS
                     AWRSGASPVTVIYRRGRAEMPAQVEEIEAAEREGIVIRTGLAPVEVLSRDGAVVGIRC
                     TETAPADLPAGARAAGDGRATWVPVPGTDQELATRTILVAVGEEPDPSILPEGAGIEV
                     SGWAGIVADPATLATGRAGIFAGGDVVSGPKTIIDAVASGRRAAASIHEYLAGVPDGE
                     REILAAVRYRTPRETRVAVDL"
BASE COUNT          466 a         1267 c         1272 g          449 t
ORIGIN      
        1 gacggcggca tcgaccgggc cggcgggttc gcggctccgg gacccgaccg tggcgtggcc
       61 aggttcgtga gccccgagct gacgaccgcc cgcctggagg ccccgctcca gcgtgccggc
      121 gagacgatcg gcctgctgct ggtcggctcc cgccgcgaac gcgggttcga ggtcgacgag
      181 gtcgagaccc tgtcgtcgct ggccaaccag gcggcgatcg ccatcgagaa cgcccgcctc
      241 caggcacggc tccgcgagct ggccgtcgac gcggagcggg aacggatcgc gcgggagatg
      301 cacgacggcc tcgcccaggt gctgggctac gtcaacacga agtcgcaggc gatcgaggag
      361 ctgctcgtgg cggggcgaac cggcgaggcc cgcggcctgc tggcggagct cgccgcggcc
      421 gcgcgctcga tctacgtcga cgtccgcgag gcgatcctcg gcctgcggag cccggtcccg
      481 ccgggggtcg ggctggtggc ctcggtcgag gactacgcgg cacggttcgc cgacgcggcc
      541 aagatcgccg taagggtcga cgccacggag gcggcccgga ggctcgatct cacgccggac
      601 gtggaggccc aggtgttccg gatcgtccag gaggccctga ccaacgtgcg caagcattcc
      661 ggggcaggcc gtgccgagat ctcgttcacg gtcggtgacg accggctcga ggtcgtggtc
      721 ctcgatgacg ggcacgggct cggcggggtg ggaggcctcg ggagcccgga ccttccccac
      781 tacggcatcg aggcgatgcg cgaacgtgct gcgagcatcg gtgcgacggt ggactggacg
      841 aacccggacg gcggcggctg ccgggtgcac ctctcggtcg cgggcgcggt cgccgtcgga
      901 tcggccggga cggcggcgac ctgatgcgga tcgtcctggc cgacgaccac gcgctgttcc
      961 gtgacggcgt ctcgtcgctg ctccaggcct ggggccacga cgtggtcggc cgggcgtcca
     1021 acggcgtgga ggcggtcgag ctcgcgctcc ggctcgcgcc cgacctcgtc ctgatggacg
     1081 tccggatgcc cggcaggtcg ggggtcgagg cgacccgcga gatcgccgcg gcgcgacccg
     1141 agatcccgat cgtgatgctc acggtgagcg aggacgagga cgacctgttc gccgccatcc
     1201 agtccggcgc gcgcggctac ctgctcaaga acctcgaggc ccaccagctg cgggcgatga
     1261 tcgacacggt cgcccgggga gaggcggcga tcacgcccgc cacggccgcc cggatcatcc
     1321 ggcacctgtc gacgctcaac gccccggccg aggaatcgac gccggaccgg ctgaccgccc
     1381 gtgagctcga cgtcctccgg ctggtgaccg ccggacggca caacaaggag atcgccgccg
     1441 agctcgggat cagcgagaac accacgaagt accacctccg caacatcctc gagaagctcc
     1501 acgccgagag ccggaccgag gtggccatgc gcgccctgcg cgagggactc gtcgaccccg
     1561 agtgacgatc ggcccgggcc gggtggcccg gggcccccca cccattctgg cgatcccgcc
     1621 cgttcgggtg ggcgtggtgc attgcaccgg ccgcgcggat gctgcctccg tcaccggacg
     1681 aaggagacgc tccatgggct atcgcgtcga catcgatcac acgggctgca tcaactgcgg
     1741 catctgcatg gacacctgcc cggtcgaggc gctggacatg tcccggccgc aggtccccgg
     1801 catcgagacg gccggcttcg gcctgccgca gccctggatg atggagcacc cgatccaggt
     1861 cggcgagtgc atcggttgcg ggatctgcat cggcgaatgc ccggtcctgg tgatgacgct
     1921 cgtcgccgag cccaccccga ccgtgctcgc gccgcgccag ggcccgatcg agcgaccggt
     1981 cgcggcctcg gccggagcag ccccgtggct gccgctcgcc accgtcaccc gtgaggtcct
     2041 caagcgcgag cacccgtccc cctggggcga cctgctccac tgggagacgg ccagccgcga
     2101 ccaggcctgg caggtctggc gctcgatgaa gacccaggga cggaccgttc cgatcgcgcc
     2161 ctgccaggcg gcctgcccgg ccggcacgga cgcgggccgc tacgtcggcc tgatcggcgc
     2221 gcagcgctac gacgacgcct atgccgtggc cgcggaggtc aatccgttcc cgtcggtgtg
     2281 cggctggatc tgcaccgcgc cgtgcgagag cgtctgccgg cgtggcgtgc tcgacgaacc
     2341 catcgcgatc cgcaccctca agcgtttcgc ggccgagcac ggtgacctgc cgccggtcga
     2401 tcccccggcg acccgccggg ccgagaaggt cggcatcgtc ggcggaggcc cggccggcat
     2461 gtcggcggcg tactacctgg cccgcctcgg ttatccggtc acggtcttcg aggcgatgcc
     2521 cgtgcccggc ggcatgatgg cgatcgggat cccgtcatac cggctgccgc gcgacgtcct
     2581 ccaggcggag atcgcgcgga tcgtcgggct gggcgtggac ctcaggctca atgccgcgat
     2641 gggccgtgac ttcaccctcg gcgacctcga gagccagggc tatcgggccg tcttcctcgc
     2701 gacgggcgcg tccaagagcc gccggctcgg cgtccccggc gacgacgtcc agggcgtggt
     2761 cccggccacg ctcttcctca agcgggtcaa cctcggcgag gaaccgcggc tgaccggccc
     2821 ggccgtcgtg gtcgggggcg ggagcaccgc gatggacgcg gcgcggtcgg cctggcggag
     2881 cggcgcctca ccggtgaccg tcatctaccg ccgcggccgc gccgagatgc ccgcgcaggt
     2941 cgaggagatc gaggccgccg aacgcgaggg gatcgtcatc cggaccggtc tcgcgccggt
     3001 ggaggtcctc agccgcgacg gagcggtggt cggcatccgc tgcaccgaga ccgccccggc
     3061 cgacctgccc gcgggcgccc gcgccgccgg cgacgggcgt gccacctggg tccccgtccc
     3121 cgggaccgac caggagctcg cgacccggac gatcctcgtc gcggtcggcg aggaacccga
     3181 cccgtcgatc ctgcccgagg gggccggcat cgaggtcagc ggctgggccg ggatcgtcgc
     3241 cgatcccgcc acgctggcga ccggtcgggc cggcatcttc gccggtggcg acgtcgtgtc
     3301 gggtcccaag acgatcatcg acgcggttgc ctccggccgc cgcgccgcag cgtccatcca
     3361 tgagtacctc gccggcgtac ccgacggcga gcgcgagatc ctggccgcgg tccgctaccg
     3421 gacgcctcgc gagacccggg tcgccgtgga cctc
//
LOCUS       DATDDI010000618         3915 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_76118, whole genome shotgun sequence.
ACCESSION   DATDDI010000618 DATDDI010000000
VERSION     DATDDI010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3915
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76118"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..599)
                     /locus_tag="VIU37_08835"
     CDS             complement(<1..599)
                     /locus_tag="VIU37_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015506105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 factor domain-containing protein"
                     /protein_id="HEY6014101.1"
                     /translation="MSADPLDKQLVEAVLSRPRRAKADLEEAKLAGLRPSRSTGLAVA
                     DDDEDDDEEEDDLDLGADLTADGADVGIVVVADDLASEAAARLPADAPSKLDSKAVEE
                     PTAEELEAISADMIGIDDPVRMYLKEIGKVALLTAEEEVVLAKAIELGEQMVEAPWKG
                     IFSLHEWTLHDTERKTRTLKPQHRLPFGEEAHQMVREAIT"
     gene            complement(603..2507)
                     /gene="dnaG"
                     /locus_tag="VIU37_08840"
     CDS             complement(603..2507)
                     /gene="dnaG"
                     /locus_tag="VIU37_08840"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEY6014102.1"
                     /translation="MAVGVAAEVKSRLSVVDVVGESVSLKKAGTTYKGLCPFHGEKTP
                     SFVVTPQRESWHCFGCGLGGDIFSFVMQRDSVPFPEALRTLATRAGVEIDERTKHEDA
                     HKARLRQVLDHAIAFYHAVLTASNAGKPALEYLRNRGFTDETIAAHQLGWAPGGWEQM
                     TRTLGAKRDVRPDELLEVGLASPRQSGRGGVYDKFRSRVIFPIRDQNGHAVGLGGRLL
                     EGDGPKYLNSPATPLFDKSRTLYLIDKAKGPIRKAGQAVIVEGYTDALMAHQAGFDNV
                     VASLGTALTPGQVALLTRYTNRIALAYDVDPAGEKAGTLGVTSLAGLIGQLQSDTSGV
                     KLEDVRVARLPDGKDPDEVVRESPVAWEAAIAKAKPLVEYLIDHHAGRFDLKTSSGRI
                     GFVEAVMPALREIADPLRRDEALGEVRRVSGVEDRVLRQVLDRPARNPIGQGRQSGEG
                     SGESRITADAVLSSPDALPIHDILRAITPVESELLRLLLLVPDLQVRVVDELEPDQLP
                     STVARELYRAILTQRAPDDAGTHPPFNWDGLLLALDPEVRALAQALVAVNRPRPEARE
                     LERLLIDIEQIRLRDRNDYNESALAEAERESDSDAINRLMLEKIQINEARLSLDRRRD
                     QTRLLAGNRR"
     gene            2854..3024
                     /locus_tag="VIU37_08845"
     CDS             2854..3024
                     /locus_tag="VIU37_08845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014103.1"
                     /translation="MALQSTPREGVSFEDIVRVLLVVAAVIVVMFGLNLVFGFNGTGP
                     WTDLTVDPGRPF"
     gene            complement(3113..>3915)
                     /locus_tag="VIU37_08850"
     CDS             complement(3113..>3915)
                     /locus_tag="VIU37_08850"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEY6014104.1"
                     /translation="QAMSRFRDTSELTKLNRAAGTGREVAIGRRLERAIVASDRARRL
                     TGGRFDPRVLADLDRLGYRGAALPARPAAAPAAGRAGRIASRATPGRLRLDRPVDLGG
                     IGKGLALRWAARRLDGRRLGSYLLEAGGDLVVRGPGPDGAEWRVGIEDPMGGDVPLAV
                     VAARDVAVTTSSIGVHAWLQGGRPVHHLLDPGTGQPGGDGLRSVTVAGDDPAWAEVWS
                     KTLFLAGRDAIADLARRRGLAAWWCDEDGHLEMTAAARIRTVWVAAEA"
BASE COUNT          520 a         1419 c         1355 g          621 t
ORIGIN      
        1 gtgatggcct cgcggaccat ctggtgggcc tcttcgccga atggcaggcg gtgctgcggc
       61 ttgagcgtcc gggtcttgcg ctcggtgtcg tggagcgtcc actcgtggag cgagaagatg
      121 cccttccagg gcgcctcgac catctgctcg ccgagctcga tcgccttggc caggacgacc
      181 tcctcctcgg cggtcagcag cgccaccttg ccgatctcct tgaggtacat ccggaccggg
      241 tcgtcgatcc cgatcatgtc ggccgagatg gcctcgagct cctccgccgt gggctcctcg
      301 acagccttcg aatcgagctt ggacggcgcg tccgcgggga ggcgcgccgc ggcctcgctc
      361 gcgagatcgt cggcgacgac cacgatcccg acgtcggcgc cgtcggcggt gaggtcggcc
      421 ccgaggtcga ggtcgtcctc ctcctcgtcg tcgtcctcgt cgtcgtcagc cacggccagg
      481 cccgtcgatc gcgaggggcg caggccggcc agcttggcct cttcgagatc ggccttggcg
      541 cggcggggcc gcgacaggac ggcctccacg agttgcttgt cgaggggatc ggcggacatg
      601 ggttacctcc ggttgccggc caggagccgg gtctggtctc ggcgccggtc gagggacaga
      661 cgcgcttcgt tgatctggat cttctcgagc atcaggcggt tgatggcatc gctgtcgctt
      721 tcacgctcgg cctccgccag ggcggactcg ttgtagtcgt tccggtcccg caaccggatc
      781 tgttcgatgt cgatgagcag gcgctccagc tcgcgagcct ccggccgcgg ccggttgacc
      841 gcgaccaggg cctgggccag cgcgcgaacc tccgggtcca gcgcgaggag caggccgtcc
      901 cagttgaacg gcgggtgcgt gccggcgtca tcgggcgccc gctgggtcag gatcgcccgg
      961 tagagctccc gcgccaccgt gctcggcagc tgatccggct cgagctcgtc gacgacccgc
     1021 acctgcaggt ccggcaccag cagcaacagc cgcaggagct ccgactcgac cggcgtgatc
     1081 gcccgcagga tgtcgtggat cggcagcgcg tccggtgacg agagcacggc atcggcggtg
     1141 atccgcgact cgccgctccc ctccccgctc tgtcgcccct ggccgatggg gttgcgggcc
     1201 gggcgatcca gcacctgacg gagcacgcgg tcctcgaccc ccgagacccg ccgcacctcg
     1261 ccgagcgcct cgtcgcggcg caacgggtcg gcgatctcac ggagcgccgg catgacggcc
     1321 tcgacgaaac cgatccgtcc ggagctcgtc ttgagatcga accgcccggc atgatggtcg
     1381 atgaggtact cgacgagcgg cttggccttc gcgatcgccg cctcccatgc aaccggcgat
     1441 tcgcggacga cctcgtcggg atccttgccg tccggcagcc gcgcgacgcg gacgtcctcg
     1501 agcttcacgc ccgaggtgtc cgactggagc tgtccgatca gcccggccag cgacgtcacg
     1561 ccgagcgtgc ccgccttctc gcccgccgga tccacgtcgt acgccagcgc gatccggttc
     1621 gtgtatcggg tgagcagggc gacctggccg ggcgtcagcg ccgtgccgag gctggcgacc
     1681 acgttgtcga acccggcctg gtgggccatc agcgcgtccg tgtagccctc gacgatgacc
     1741 gcctggccag ccttgcggat ggggcccttg gccttgtcga tcaggtagag cgtccggctc
     1801 ttgtcgaaga gcggcgtcgc cggcgagttc aggtacttgg gtccgtcccc ctcgagcagc
     1861 cgcccaccga ggccgaccgc gtggccgttc tggtcgcgga tcgggaagat cacgcgcgac
     1921 cggaacttgt cgtagacgcc gccccgcccg ctctggcggg gggacgcgag cccgacctcg
     1981 agcagctcgt cgggccggac atcgcgcttg gcgccgaggg tccgggtcat ctgctcccag
     2041 ccgcccggcg cccagccgag ctgatgggcg gcgatcgtct cgtccgtgaa gccgcggttg
     2101 cggaggtact cgagggcagg cttgccggcg ttcgaggcgg tcaggaccgc gtggtagaag
     2161 gcgatcgcgt gatcgagcac ctggcggagg cgagccttgt gcgcgtcctc gtgcttggtc
     2221 cgctcgtcga tctcgacgcc cgcccgggtc gcgagcgttc gcagcgcctc ggggaagggc
     2281 acgctgtcgc gctgcatgac gaagctgaag atgtcgccgc cgaggccgca gccgaagcag
     2341 tgccagctct cgcgctgcgg ggtgaccacg aaggacggtg tcttctcgcc gtggaacggg
     2401 cagagaccct tgtaggtcgt gcccgccttc ttcaggctga ccgattcgcc gaccacgtcg
     2461 acgacggaca gccggctctt cacttcggct gcgacaccga ccgccaaacg gcgcctcctg
     2521 gagctgaaca tggctgtggg cctgtcaagt cttgacaagc ccgattggcg tcagtatcgc
     2581 cccaacgggc tcggcttgtc aatacccttg tcaatactcc gtgggagtat cgggagcgcg
     2641 acgccatgca cggttgcgca tccggcgatc tgtcctcatg cccctcaacc agcatcccaa
     2701 tggcacttgc cgcggccgac ccgtccgcaa cacgattcgc gccggtaggg tgttggagcc
     2761 agcgactcgc ccccggtgcg cgagtcgatc gggtcgccga tccacgcagc gtcactggcc
     2821 gatccagttt cgacgaccca tcggaggcgc gccatggcgc tccagtcgac tccccgcgag
     2881 ggagtctcgt tcgaggatat cgtccgcgtc ctcctcgtcg ttgccgccgt catcgtggtg
     2941 atgttcggcc tcaacctggt cttcggcttc aatgggacgg gcccctggac ggacctgacc
     3001 gtcgacccgg gccgcccatt ctgatcgcgc actcccccga cagccggccc ggcaggccgg
     3061 gtgcgtgggg atcggcctgt cgctactcgt cgtacgtcgc tgaggtctga ggtcaggcct
     3121 cggcggccac ccataccgtt cgaatgcgag cggcggcggt catctcgaga tggccgtcct
     3181 cgtcgcacca ccatgccgcg aggccgcgcc tgcgggcgag gtcggcgatc gcgtcgcgtc
     3241 cggccaggaa cagcgtcttc gaccagacct ccgcccaggc cgggtcgtcc ccggcgacgg
     3301 tgaccgaacg cagcccgtct ccgcctggct ggccggtccc gggatccagc aggtggtgga
     3361 ccggccgtcc tccctgcagc caggcgtgca ccccgatcga cgaggtcgtc accgcgacgt
     3421 cccgggcggc gaccaccgcg agcggcacgt ccccgcccat cgggtcctcg atcccgactc
     3481 gccattccgc gccgtcgggt ccggggccac ggacgaccag gtcgccgccg gcctcgagca
     3541 ggtacgagcc gagcctgcgg ccgtcgagac ggcgcgcggc ccagcgcagc gccaacccct
     3601 tgccgatccc gccgaggtcg acgggccgat cgagtcggag ccgtccgggc gtcgcgcgac
     3661 tggcgatccg gccggcacgc cccgcggccg gcgcagcagc tggccgcgcg ggcagcgcgg
     3721 caccccggta gccgagccgg tcgagatccg ccagcacgcg tgggtcgaac cgcccgcctg
     3781 tcagccgtcg cgcgcgatcg gacgcgacga tggcccgctc gagccggcga ccgatggcca
     3841 cctcccggcc cgtcccggcc gcgcgattga gcttggtgag ctcgctcgtg tcgcgaaagc
     3901 gcgacatcgc ctgct
//
LOCUS       DATDDI010000619         2571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_13523, whole genome shotgun sequence.
ACCESSION   DATDDI010000619 DATDDI010000000
VERSION     DATDDI010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13523"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VIU37_08855"
     CDS             <1..285
                     /locus_tag="VIU37_08855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014105.1"
                     /translation="IDTGGYTVANGDGLALRKGRLYAVRNQDNLVAVLNLGSDLLSAS
                     LVGEITSPGNLDVPTTAAFALDKLWVVNARFTTTPTATTPYWITRLPLQP"
     gene            438..1862
                     /locus_tag="VIU37_08860"
     CDS             438..1862
                     /locus_tag="VIU37_08860"
                     /inference="COORDINATES: protein motif:HMM:NF013791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEY6014106.1"
                     /translation="MDALDLARWQFGITTVYHFLFVPLTIGLSFLVAGFQTIWVRTGN
                     PAYLRLTKFYGELFLINFALGIVTGIVQEFQFGMNWSTYSRFVGDIFGAPLAIEGLLA
                     FFLESTFLGLWIFGWDRLPRGLHLATIWIAAIGTVLSAYFILAANAWMQNPVGYTFNA
                     ATGRAELTDFIAVLTNQLAVITFLHTIVAAMMTAGAFVAAIAVWRLARRPGPDDGAFR
                     SAARIGSAAVLVAGLLVFLTGDQQARVMTNVQPMKMAAAEAQYETSQPASFSVFTIGT
                     LDGSKELFSIRIPNVLSFLATGDFNGRVEGINDLQADYQKLYGPGDYRPIIPVTYWTF
                     RLMIGAGGLAALAAAWMLWLLRRGRSIRPNRWVVATAIVLPFLPLAANSIGWIFTELG
                     RQPWIVFGLMHTSAGVSPGTSSLEVAITLVTFTLLYGGLAVVEVGLLLRRIRAGLPPE
                     PGRAGPGGGDADGDEADRPAAFAY"
     gene            1874..>2571
                     /gene="cydB"
                     /locus_tag="VIU37_08865"
     CDS             1874..>2571
                     /gene="cydB"
                     /locus_tag="VIU37_08865"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014386.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEY6014107.1"
                     /translation="MELTTIWFALIAFLWIGYLVLEGFDFGVGILLPVIGRSDRERRA
                     VIATIGPVWDGNEVWVLVAGGATFAAFPEWYATLFSGFYLPLFLILVALIIRGVAFEF
                     RGKRNDSAWRLRWDAAIFIGSLLPAILWGVAFANIVAGVPINAEHEFTGDLFTLLNPY
                     GLLGGLTTLGLFVTHGAVFLALKTTGELRARANRTAAIAGLVTAVVAVAFLAWTQQQR
                     GDTGSLAASVVAAVA"
BASE COUNT          328 a          944 c          852 g          447 t
ORIGIN      
        1 atcgacaccg gcggctacac cgtcgccaac ggcgacggcc tcgcgctccg caagggccgc
       61 ctctacgcgg tgcgcaacca ggacaacctg gtggccgtgc tcaacctcgg ctccgacctg
      121 ctgagcgcgt cgctcgtcgg cgagatcacc tcgccgggca acctggacgt accgaccacc
      181 gcggccttcg cgctcgacaa gctctgggtc gtcaacgccc ggttcaccac gacacccacg
      241 gcgaccaccc cgtactggat cacgcgcctg ccgctccagc cgtagcccgc gggcgctcaa
      301 ccccacgcct gtctcgctgc cggccggcct ctcctcgggg gggggccggc cggcgttttg
      361 ggccattcgg ctcaggtgcc cgcgtgcgac gatgacctac cctgaccgcc gatccctggc
      421 acagaggagg cgaccgcgtg gatgcccttg acctggcccg gtggcagttc ggaatcacga
      481 ccgtctacca cttcctgttc gtcccgctga cgatcgggct gagcttcctg gtcgcgggct
      541 tccagacgat ctgggttcgg acgggcaatc ccgcctacct gcgcctgacg aagttctacg
      601 gcgagctgtt cctgatcaac ttcgccctcg gcatcgtcac cggcatcgtc caggagttcc
      661 agttcgggat gaactggagc acgtacagcc ggttcgtcgg cgacatcttc ggcgccccgc
      721 tggcgatcga gggcctcctg gcgttcttcc tcgaatcgac cttcctcggg ctgtggatct
      781 tcggctggga ccgcctgccc aggggcctcc acctcgccac gatctggatc gccgcgatcg
      841 gtacggtgct gtccgcctac ttcatcctgg cggcgaacgc ctggatgcag aacccggtcg
      901 gctacacgtt caacgccgcg accgggcggg ccgagctgac cgacttcatc gcggtcctca
      961 ccaaccagct ggccgtgatc acgttcctcc acacgatcgt ggcggcgatg atgaccgccg
     1021 gggcgttcgt ggccgcgatc gccgtgtggc ggctggcccg gcgaccgggc ccggacgacg
     1081 gtgccttccg gtccgccgcc cggatcgggt ccgcggcggt cctcgtggcc ggcctcctcg
     1141 tcttcctgac cggcgatcag caggcgcggg tgatgaccaa cgtgcagccg atgaagatgg
     1201 ccgcggccga ggcccagtac gagacctcgc agccggcgtc gttctcggtg ttcacgatcg
     1261 ggacgctcga cggcagcaag gagctgttct cgatccgcat cccgaacgtg ctgtcgttcc
     1321 tcgccacggg cgacttcaac gggagggtcg agggcatcaa cgacctccag gccgactacc
     1381 agaagctcta cggcccgggt gactaccggc cgatcatccc ggtcacctac tggaccttcc
     1441 ggctgatgat cggcgccggg ggcctggcgg ccctcgccgc cgcgtggatg ctctggctgc
     1501 tgcgtcgcgg gcgatccatc cggccgaacc ggtgggtcgt cgccaccgcc atcgtcctgc
     1561 ccttcctgcc gctcgcggcc aactcgatcg gttggatctt caccgagctc ggacgccagc
     1621 cgtggatcgt gttcgggctg atgcacacct cggcgggcgt ctccccgggg acgtccagcc
     1681 tggaggtcgc gatcacgctc gtcaccttca ccctgctgta cggcggcctc gcggtcgtcg
     1741 aggtcgggct cctgctccgg cgcatccgtg ccggcctgcc gcccgaaccg ggtcgggccg
     1801 gccccggcgg cggcgatgcc gacggcgacg aagccgaccg ccccgccgcg ttcgcgtact
     1861 gaggagcgtc gagatggagc tcacgacgat ctggttcgcg ttgatcgcgt tcctctggat
     1921 cgggtatctc gtgctcgagg gcttcgactt cggggtcggg atcctgctgc cggtgatcgg
     1981 ccggagcgat cgcgagcggc gtgccgtgat cgcgacgatc gggccggtct gggacggcaa
     2041 cgaggtgtgg gtgctggtcg ccggcggcgc gaccttcgcc gccttcccag agtggtacgc
     2101 gacgctgttc agcggcttct acctgccgct cttcctgatc ctcgtcgcgc tgatcatccg
     2161 cggcgtggcg ttcgagttcc ggggcaagcg caacgattcg gcctggcggc tccgctggga
     2221 cgccgcgatc ttcatcggct cgctgctgcc ggcgatcctg tggggcgtgg ccttcgccaa
     2281 catcgtggcc ggcgtcccga tcaacgccga gcacgagttc accggcgacc tgttcacgct
     2341 gctcaacccg tacgggctgc tcggcgggct caccacgctc ggcctgttcg tgacccacgg
     2401 cgccgtgttc ctggcgctca agacgaccgg cgagctccgc gcccgcgcga accggacggc
     2461 cgccatcgcc ggcctggtca ccgcggtcgt cgcggtcgcc ttcctggcct ggacccagca
     2521 gcagcgcggc gacaccggct cgctcgcggc gtccgtggtt gccgcggtcg c
//
LOCUS       DATDDI010000620         1684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_367285, whole genome shotgun sequence.
ACCESSION   DATDDI010000620 DATDDI010000000
VERSION     DATDDI010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367285"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            292..717
                     /gene="rpsF"
                     /locus_tag="VIU37_08870"
     CDS             292..717
                     /gene="rpsF"
                     /locus_tag="VIU37_08870"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEY6014108.1"
                     /translation="MRRYELMLVFRPDAPDERLSAIIDRTTRQITAAGGQIVKVAPWG
                     RRRLAYPIDRQREGSYHIVVFEAPAEAIAELERSLLITEEVLRHLVVRQERPAKARAA
                     ASDEGDEELLPSAEDEVEEDDGRERIDESESEAAPAATD"
     gene            731..1171
                     /gene="ssb"
                     /locus_tag="VIU37_08875"
     CDS             731..1171
                     /gene="ssb"
                     /locus_tag="VIU37_08875"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEY6014109.1"
                     /translation="MAFSKIQIVGNLGRDPELRYTPSGRPVTEFSVAVNQSTKNQQTG
                     EWVEATDWFRVSVWGDRAERAAENLRKGARVLVDGRFRTREYETKDGRKGLSLEISAD
                     TVLPLDRREPGAEGTFSGAPAGAGAPAGGRSGGFDDTEIDELPF"
     gene            1196..1462
                     /gene="rpsR"
                     /locus_tag="VIU37_08880"
     CDS             1196..1462
                     /gene="rpsR"
                     /locus_tag="VIU37_08880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006626602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEY6014110.1"
                     /translation="MPPTRSRKRDDFYRDRRRRKVCAFCADKTVSIDYKEVNRLRRYL
                     SERAKIEPRRKTGTCAGHQRELSIALERARHVALLPYAPEHLRP"
BASE COUNT          244 a          584 c          611 g          245 t
ORIGIN      
        1 gagatcgcct gttcggcgct ggacgtccga gtcagaaccc ggccggaccg ggtgagggcc
       61 tgcgcgatgg cgtcgctcga tgcgttgccg aggagcagga cacgagtgtc tggcacggtt
      121 cccccgtctg gtgggtgtgg aggtccggtc gccggttcga ccggcgcaga ggatacatcg
      181 aggcgttggc cggccggccc cgagccccgt ggtatcctgc cgcggttgcc tttcggctcc
      241 gtgacggcgc gccgtcagcg gggcattccc attggaagga gatccacggc tgtgcgccga
      301 tatgaactga tgctcgtgtt ccggccggac gcgccggacg agcggctctc ggcgatcatc
      361 gatcgcacga cccgccagat caccgccgcc ggcggccaga tcgtcaaggt ggcgccctgg
      421 ggccgccgtc gcctggccta cccgatcgac cggcagcgcg aaggctcgta ccacatcgtc
      481 gtcttcgagg cgcctgccga ggcgatcgcc gagctcgagc gaagcctgct catcaccgag
      541 gaggtcctgc gccatctcgt cgtccgccag gagcgaccgg ccaaggcccg cgccgcggcg
      601 tccgacgagg gcgacgagga gctgctcccg tcggccgagg acgaggtcga ggaggacgac
      661 ggtcgcgagc ggatcgacga gtccgagagc gaggccgccc cggcggcgac ggactgagag
      721 ggatcgagcg atggcgttca gcaagatcca gatcgtcggc aacctggggc gtgatccgga
      781 gctccggtac accccgagcg gtcgcccggt gaccgagttc agcgtcgcgg tcaaccagtc
      841 gaccaagaac cagcagaccg gggagtgggt cgaggcgacg gactggttcc gcgtctcggt
      901 ctggggcgat cgggccgagc gcgccgcgga gaatctccgg aagggggcgc gggtgctcgt
      961 cgacggccgc ttccggaccc gagagtacga gacgaaggat ggccgcaagg gcctgtccct
     1021 cgagatctcg gccgacaccg tcctgccgct cgaccgccgc gagcccggtg ccgagggcac
     1081 cttcagcggc gccccggccg gagccggtgc cccggccggt ggccgcagcg gcggcttcga
     1141 cgacaccgag atcgacgagc ttcccttcta gtccgaccag gagatcagac ccgccatgcc
     1201 acccacccga tcccgcaagc gggacgactt ctatcgcgat cgccggcgcc ggaaggtctg
     1261 cgcgttctgc gccgacaaga ccgtctcgat cgactacaag gaggtcaacc gcctccgccg
     1321 ctacctgtcg gagcgggcca agatcgagcc ccgccgcaag accggcacgt gcgccggcca
     1381 ccagcgcgag ctgtcgatcg cgctcgagcg ggcccggcac gtggccctcc tgccctacgc
     1441 ccccgagcat ctccgcccgt agccggcggt gatccggccg atgccatcgt tgccggctgt
     1501 gcgcgcccgc ttcgggctgg atcggtagcg ggagtggaga ccgggctgat catgctcggc
     1561 ggtggcgtcg tcgtcggcat gttcgggtcg ctgctcgggc tcggcggcgg gttgctcatc
     1621 gtgcccctgc tcacgatcgg cttcgggctg ccgcttcgcg aggccgtcgg agtgtcgctc
     1681 gtgt
//
LOCUS       DATDDI010000621         1550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_575088, whole genome shotgun sequence.
ACCESSION   DATDDI010000621 DATDDI010000000
VERSION     DATDDI010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_575088"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..762)
                     /locus_tag="VIU37_08885"
     CDS             complement(<1..762)
                     /locus_tag="VIU37_08885"
                     /inference="COORDINATES: protein motif:HMM:NF022481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HEY6014111.1"
                     /translation="MATANPTPRSARPIVASVGAVAFLVYLRTLMPGIAFGDWGEMQT
                     VPHVLGVAHPTGYPTYVLIAWLAELVPIGSVAFRANLLSAVFVSAALGAVTSIAMRVG
                     SEPLIAASGALALGAVGTVWAAATVSEVNPLHLLFAALLLDRCLAWAERRSTRDLVIG
                     GLLVGLAMGNHLLTLFLAPFVGLFVLWTGRPELLARPWLLLAALAAGALGLAVYVYIP
                     LAASQSPPLPYNHPTTLDGVLWLASGTQFRGQFDFL"
     gene            949..>1550
                     /locus_tag="VIU37_08890"
     CDS             949..>1550
                     /locus_tag="VIU37_08890"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6014112.1"
                     /translation="MTDVPLFRHRRHTVLVIEDDSANRQLLASLLTREGYTVRTAIDG
                     ESGLVASVDPDLDLILLDIGLPRMDGLEVTRRIRLDRRVRTVPIILLTGRSGVDEMVA
                     GLDAGADDFVSKPFERPELLARMRSAIRMREAILGMESAQAVVAALANAVEAKDITTE
                     LHCQRMAGLAAQLGEKVGLTDEELEGLAYGALLHDVGKIGV"
BASE COUNT          260 a          528 c          575 g          187 t
ORIGIN      
        1 caggaagtcg aactggccgc gaaactgcgt gccgctggcc agccagagga cgccgtccaa
       61 ggtcgtggga tggttgtacg gaagcggcgg cgactggctc gccgcgagcg ggatgtacac
      121 gtagacggcc aggccgagcg cgccggccgc cagggcagcc aggaggagcc acggacgcgc
      181 caggagctcc gggcgaccgg tccacagcac gaacaacccg acgaacgggg caaggaacag
      241 cgtcagcagg tggttgccca tcgccaggcc gaccaggaga ccgccgatga cgagatcccg
      301 ggtcgatcgc cgctccgccc aggccaggca gcggtcgagg agcagcgccg cgaacagcag
      361 gtggagcggg ttgacctccg acacggtggc cgcggcccag acggtcccga ccgcgcccag
      421 cgcgagcgcc ccggacgcgg cgatcagcgg ctcgctgccg acgcgcatcg cgatcgacgt
      481 caccgcgccg agtgccgcgc tcacgaagac ggctgacagg aggttggccc ggaaggccac
      541 cgagccgatc gggaccagct cggccagcca ggcgatgagc acgtaggtgg ggtagccggt
      601 cgggtgggcg acgccgagga cgtgcggtac cgtctgcatc tcgccccagt ccccgaacgc
      661 gatgccgggc atgagcgtgc ggaggtagac caggaaggcc acggctccga cgctcgcaac
      721 gatcggccgg gcggagcgcg gggtcggatt ggcggtggcc acgcgcgcat ggtatgcggg
      781 gcgcccggcg gccgggcacc ggccggtccc gtgcgtttga cgtggcatcg gaacccggac
      841 gatcgtaacg gggcggatgg cccgttcgtt accgaggcgt cggtagctcg gtcggccaca
      901 ctggcatgcc agcaccccgg cgacgcgcgt cggcccaaga ggcaagcgat gacagacgtc
      961 cctctgtttc gccatcgaag gcacaccgtc ctcgtgatcg aggacgattc ggcgaaccgc
     1021 cagctcctcg ccagcctcct cacccgcgag gggtacaccg tccggaccgc gatcgacggc
     1081 gagagcggcc tggtcgcctc ggtcgatccc gatctcgacc tgatcctgct cgacatcggg
     1141 ctgccccgga tggacgggct cgaggtcacc cgtcggatcc ggctcgatcg ccgcgtgcga
     1201 accgtgccga tcatcctgct caccggccgc tccggggtcg acgagatggt ggcaggcctg
     1261 gacgccgggg ccgatgactt cgtgtccaag ccgttcgagc ggcccgagct gctcgcacgg
     1321 atgcgcagcg cgatccggat gcgcgaggcc atcctcggga tggagtccgc acaggccgtc
     1381 gtcgcggcgc tcgcgaacgc cgtcgaggcg aaggacatca ccaccgagct ccactgccag
     1441 cggatggccg gcctggccgc ccagctcggc gagaaggtgg ggctgacgga tgaggagctc
     1501 gagggactgg cgtacggagc cctgctccat gacgtcggga agatcggcgt
//
LOCUS       DATDDI010000622         1927 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_575118, whole genome shotgun sequence.
ACCESSION   DATDDI010000622 DATDDI010000000
VERSION     DATDDI010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_575118"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /locus_tag="VIU37_08895"
     CDS             complement(<1..903)
                     /locus_tag="VIU37_08895"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEY6014113.1"
                     /translation="MAIVPPQVDRETRLRMYRTMVDCRTFEVRAQELFFEGLVRGTTH
                     LGVGQEAVAAGLAAAMRDDDYTFCTYRGHNHTLARGVPMAPVFAELFGRATGLMGGKG
                     GSMHLTSVEHGAMGSYAIVGAHLPIALGAAWSAQYRKSGQVAVCFFGDGTTNIGAFHE
                     ALNMAAVWKAPVVFVCENNQYMEYTAIRDVTAVEHPAADRASAYGLESIIVDGNDVDA
                     VYGVARTAVDRARAGDGPSLIEAVTYRHGGHSRADPGKYRPDDEVAAWKARDPIPAYR
                     ASLEAAGVPPAELDAIESAARDAVA"
     gene            complement(914..>1927)
                     /locus_tag="VIU37_08900"
     CDS             complement(914..>1927)
                     /locus_tag="VIU37_08900"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEY6014114.1"
                     /translation="RGGDPHIWDFGSAAKHHRLNCPWLRPENVHAGMIGLRGAVAPDA
                     GLFRDAAKQIRAILDAEGVGDMPIGVDLGEPPMLAALADVGITVRDGQQVMLDAREVK
                     SKDEIILLNTACAMVDGAYQMIAEQLKPGVRESELVANVTKALFDMGSEHVDNINAVS
                     GERCSPHPHVFSDRLIRPGDQAFFDIIHTFVGYKTCYYRTFVVGKGTDAQRDAYKQAR
                     EWIDASIELMRPGVTTDQVAKVWPKAEEFGFDNEMECFGLQFGHSVGLFLHERPIISR
                     LNSLDHPVEIKEGMVIALETYCPAKDGVSAARIEEEVVVTADGPVVITRFPSDELFVA
                     NAY"
BASE COUNT          266 a          675 c          679 g          307 t
ORIGIN      
        1 ggcgaccgcg tcccgcgccg ctgactcgat cgcgtccagc tcggccggcg ggacgccggc
       61 ggcctccagg ctcgcgcggt aggccgggat cgggtcgcgt gccttccagg ccgcgacctc
      121 gtcgtccggg cggtacttgc ccggatcggc gcgcgagtgg ccgccgtgcc ggtaggtgac
      181 cgcctcgatc agcgacgggc cgtcgcccgc tcgcgcgcgg tccacggcgg tgcgggccac
      241 cccgtagacg gcgtcgacgt cgttgccgtc gacgatgatc gattcgagcc cgtaggccga
      301 cgcccggtcc gccgccgggt gctcgaccgc cgtcacgtcg cggatcgccg tgtactccat
      361 gtactggttg ttctcgcaga cgaagaccac cggtgccttc cagacggcgg ccatgttcag
      421 cgcctcgtgg aacgcgccga tgttggtcgt cccgtcgccg aagaagcaga cggcgacctg
      481 gccggacttg cggtactggg ccgaccacgc cgcgccgagc gcgatcggca ggtgggcgcc
      541 gacgatcgcg tacgagccca tcgccccgtg ctcgacgctg gtcaggtgca tcgagccgcc
      601 cttgcccccc atcagcccgg tcgcccgccc gaacagctcg gcgaagaccg gcgccatcgg
      661 cacgccgcgc gccagcgtgt ggttgtggcc gcggtaggtg cagaaggtgt agtcgtcgtc
      721 gcgcatcgcc gcggcgaggc cggcggccac ggcctcctgg ccgacgccga gatgggtggt
      781 gccgcggacc agcccctcga agaagagctc ctgcgcgcga acctcgaacg tgcggcagtc
      841 gaccatcgtc cggtacatcc ggagccgggt ctcccggtcg acctgcggcg ggacgatcgc
      901 catcgatgcg ctcctagtag gcgttggcga cgaacagctc gtcggatggg aacctggtga
      961 tgacgaccgg gccgtcggcg gtgaccacga cctcctcctc gatccgcgcc gccgagacgc
     1021 cgtccttggc cgggcagtac gtctcgaggg cgatgaccat gccttccttg atctcgaccg
     1081 ggtggtcgag cgagttgagc cggctgatga tcgggcgctc gtggaggaag agccccacgc
     1141 tgtggccgaa ctggaggccg aagcactcca tctcgttgtc gaacccgaac tcctcggcct
     1201 tcggccagac cttcgccacc tggtccgtgg tgacgccggg gcgcatcagc tcgatcgagg
     1261 cgtcgatcca ctcgcgcgcc tgcttgtagg cgtcgcgctg ggcgtccgtg cccttgccga
     1321 cgacgaaggt ccggtaatag cacgtcttgt agccgacgaa cgtgtggatg atgtcgaaga
     1381 aggcctggtc gccgggacgg atgagccggt cgctgaagac gtgcggatgc gggctgcagc
     1441 gctcgccgga caccgcgttg atgttgtcga cgtgctccga gcccatgtcg aacaacgcct
     1501 tggtgacgtt ggcgacgagc tcgctctcgc ggaccccggg cttcagctgc tcggcgatca
     1561 tctggtaggc gccgtcgacc atcgcgcagg ccgtgttcag caggatgatc tcgtccttcg
     1621 acttgacctc gcgcgcgtcg agcatgacct gctggccgtc tcgcaccgtg ataccgacgt
     1681 ccgcgagcgc cgccagcatc gggggctcgc cgaggtccac gccgatcggc atgtcgccga
     1741 cgccctcggc gtcgaggatg gcgcggatct gcttcgccgc gtcgcggaag aggccggcgt
     1801 ccggggccac cgcaccgcgc aggccgatca tcccggcgtg cacgttctcg ggtcggagcc
     1861 acgggcagtt gagccgatgg tgcttcgccg ccgaaccgaa gtcccagatg tgcgggtcgc
     1921 cgccacg
//
LOCUS       DATDDI010000623         3878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_76175, whole genome shotgun sequence.
ACCESSION   DATDDI010000623 DATDDI010000000
VERSION     DATDDI010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3878
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76175"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VIU37_08905"
     CDS             complement(<1..437)
                     /locus_tag="VIU37_08905"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6014115.1"
                     /translation="MLRRTGGLLIAIGLIVGACSSAGSTTAPSAAPSAAAPSEAASSA
                     PAPSAAADKVKIGFITKFPVDFYDIMVDAAKTWAADHSDVEVVFAQGKSGTDDEGEIA
                     AIESMITQGVNAIAITPTSPNVQSALDKATAAGIKVVLIDNDIP"
     gene            complement(528..1292)
                     /locus_tag="VIU37_08910"
     CDS             complement(528..1292)
                     /locus_tag="VIU37_08910"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6014116.1"
                     /translation="MTSVTAIPALAVRGATKRFGAVLALDGVDLEVHRGQVVALLGDN
                     GAGKSTLIKCISGVHQLDDGVIEMDGLPTAIHSPAQARDLGIETVYQDLALFDNLGPA
                     ANFYAGREAAGPRWLPTWLRVLDRKGMASRTAELLDRLQVGLPDMSSQVGLLSGGQRQ
                     AVAVARAAAFASKVVILDEPTAALGLRESRRVLDLINRLRERDHAVIVISHALDHVID
                     IADRAVVLRRGRKVGEEVPTRENQQRIVSLIVGGEG"
     gene            complement(1289..2326)
                     /locus_tag="VIU37_08915"
     CDS             complement(1289..2326)
                     /locus_tag="VIU37_08915"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014117.1"
                     /translation="MTATPVEHGPETTGRGHRDGYRGLRLGFTVLRIGPLLILLAVAV
                     ALSFLSPFFLTTRNLGNVMAATAAIAVLSLGQLLVILTRGIDLSVGSTLALASVVGAL
                     VFTSVDSGPVVILAMLATGLVVGTVNGIVYVKGRLPHPFIITLAMLSIARGLALWLSG
                     GQPIRGMPPVVDSIGGGSIGWFPVSAILILGIAFLVFVLTTRIVWGRWIYAVGGNPEA
                     ARRTGIPVNKVLISVYVLSGLMAGVAGIITAGRLDAGSPTFGELAELDSIAAVVIGGA
                     SFLGGRGNVLNALVGALMIGVIRNGMNLLAVDAFFQLIVIGVVIVLAVEADVLRGHLE
                     DRFRVFEASRS"
     gene            2538..3293
                     /locus_tag="VIU37_08920"
     CDS             2538..3293
                     /locus_tag="VIU37_08920"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HEY6014118.1"
                     /translation="MAAPLTEAASAKMREMIARGELEPGARLPPEGDLAQLLGASRNT
                     VREAVRALVTVHVLDVRRGDGTFVTSLRPELLLEGFGAAVELMQEGFSLELIGVRKIL
                     EPAATALAAARIDDETLALLGAYLQQMREAGSEAERIEHDAAFHRLIAARSGNETLAS
                     MLSAVSSRTLRVRAWRGVAEEGAGARTVAQHQDILDALVARDPSRAAAAALVHVATTE
                     AWFRQAVADRLAPLSEPVETVPPQPVRKARPRR"
     gene            3290..>3878
                     /locus_tag="VIU37_08925"
     CDS             3290..>3878
                     /locus_tag="VIU37_08925"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6014119.1"
                     /translation="MTEPRRIDAHQHFWDIDSGRYAWPTPADGPIYRTYAPVDLEPEL
                     ASAGVEATVLVQTVNTLDDTDSMLSTADRHPFVGAVVGWVPLTDARLADAALAARPHP
                     RLRGIRHLVHREPDPAWLVRDDVADGLDVLARHGLVFEVVAVFPEHLRLVPVVADRHP
                     DLEIVVDHLANPPFRSAGGQSRRLVVLYRPGRGRAH"
BASE COUNT          605 a         1355 c         1342 g          576 t
ORIGIN      
        1 gggatgtcgt tgtcgatcag gacgaccttg atcccggcgg ccgtcgcctt gtcgagcgcg
       61 ctctgcacgt tcgggctcgt cggcgtgatg gcgatcgcgt tcacgccctg cgtgatcatc
      121 gactcgatcg cggcgatctc accctcatcg tcggttccgc tcttgccctg tgcgaacacc
      181 acctcgacgt ccgagtggtc ggcggcccac gtcttggccg cgtcgaccat gatgtcgtag
      241 aagtcgaccg ggaacttggt gatgaacccg atcttgacct tgtcggccgc ggcgctcggt
      301 gccggggcgc tggatgcggc ctcgctcggc gctgcggcac taggcgccgc gctgggcgcc
      361 gtcgtcgagc cagcgctcga gcaggcgccc acgatgaggc cgatcgcgat gagcagaccg
      421 cctgttctcc ttagcatgtc cctctcctgg ttcggcgggg accgatgggg ccatcggtca
      481 tgggtggccc ggcgacgtct cgtcgctcgg cagcgaggct catcgactca accttcacct
      541 ccgacgatca gcgacacgat ccgctgctgg ttctcgcggg tcgggacctc ttcgccgacc
      601 ttgcggccgc gtcgcagcac gaccgctcga tccgcgatgt cgatgacgtg gtcgagggcg
      661 tgcgagatga cgatcaccgc gtggtcccgc tcgcggagcc ggttgatcag gtccaggacg
      721 cggcgcgatt cccgaaggcc gagcgccgcc gtcggctcgt cgaggatcac caccttcgag
      781 gcgaacgccg ccgcgcgagc caccgcgacc gcctgtcgct gcccgcccga caacaggccc
      841 acctggctgg acatgtcggg caggccaacc tggagccgat cgagcagctc cgcggtcctc
      901 gaggccatcc ccttgcgatc gagcacccgc agccaggtcg gaagccagcg cggcccggcg
      961 gcctcgcggc cggcatagaa gttggcggcc gggccgaggt tgtcgaagag cgccaggtcc
     1021 tggtaaacgg tctcgatgcc gaggtcccgg gcctgggccg gggaatggat cgccgtgggc
     1081 aagccgtcca tctcgatgac cccgtcgtcg agctggtgca cgccgctgat gcacttgatg
     1141 agggtcgact tgcccgcgcc gttgtcgccg agcagggcga cgacctggcc gcgatggacc
     1201 tcgaggtcga cgccgtcgag cgcgagcacg gcgccgaacc gcttggtggc gcctcgaacg
     1261 gccagcgcag ggatcgccgt caccgacgtc atgaccgcga ggcctcgaag acccggaagc
     1321 gatcctccag gtggccgcgc aggacgtccg cctcgaccgc gagaacgatg acgacgccga
     1381 tgacgatgag ctggaagaac gcgtcgaccg ccagcaggtt catcccgttg cggatgaccc
     1441 cgatcatcag cgctccgacg agcgcgttga ggacgttgcc gcgtccaccg agaaagctcg
     1501 cgccaccgat caccaccgcg gcgatcgaat ccagctcggc gagctccccg aatgtcggcg
     1561 accccgcgtc cagccgaccg gcggtgatga tcccggcgac gccggccatc agcccgctca
     1621 ggacgtagac ggagatcagg accttgttga cggggatgcc ggtccgccgg gcagcctccg
     1681 ggttcccgcc caccgcgtag atccagcgac cccagacgat cctggtcgtg agcacgaaca
     1741 cgaggaacgc gatcccgagg atgaggatcg ccgagacggg gaaccagccg atggaaccgc
     1801 caccgatcga atcgacgacg ggcggcatgc cgcggatggg ctgaccaccg gacagccaca
     1861 gggcgaggcc gcgggcgatg ctcagcatcg ccaacgtgat gatgaacgga tgggggaggc
     1921 ggcccttgac gtagacgatc ccgttgacgg tccccaccac caggccggtc gccagcatcg
     1981 ccaggatcac cacgggaccc gagtcgacgc tggtgaagac cagcgctccg accacggacg
     2041 cgagcgcgag ggtggatccg acggacaggt cgatcccgcg ggtcaggatc accaggagct
     2101 gtcccagcga caggacggcg atcgccgcgg tcgcggccat gacgttgccg aggttgcgcg
     2161 tggtcaggaa gaacggcgac aggaatgaca gcgcgacggc gacggcaagg aggatgagca
     2221 gcggtccgat gcgcagcacg gtgaagccaa gtcggaggcc gcgatagccg tcgcggtggc
     2281 cccgtccggt ggtctcgggc ccgtgctcga caggcgtcgc cgtcacgctc ggatccctcg
     2341 acgcgccggt cgactgctcc acgggcttcc tccagacctg caccaatagt cgggtgtctg
     2401 aggccgaatt gccatcgaac aggttgcgac cggaccataa cgccccaata catcggatgt
     2461 ctagtggtat tcttcgacag ccgagtcgcg gtatcttcgg agccgtgtca accgacgcca
     2521 ccagctgagg tcacgccgtg gctgctccgc tcaccgaggc cgcgagcgcg aagatgcgcg
     2581 agatgatcgc caggggagag ctggagcccg gtgcccgcct cccacccgag ggcgatctcg
     2641 cccagctcct gggcgcttcg cgcaacacgg tccgcgaggc ggttcgggcg ctcgtcaccg
     2701 tccatgtcct cgacgtccgg cgcggtgacg ggacgtttgt cacgagcctt cggccggagc
     2761 tgctgctcga agggttcggc gccgccgtcg agctgatgca ggaagggttc tcgctcgagc
     2821 tgatcggggt ccggaagatc ctggagccgg ccgcgacggc cctcgctgcc gcacgcatcg
     2881 acgacgagac gctggcgctg ctcggcgcct acctgcagca gatgcgcgag gcgggctccg
     2941 aggccgagcg catcgaacac gatgccgcct tccaccggct gatcgcggcc cgctcgggca
     3001 atgagacgct ggcatcgatg ctgagcgccg tctcgagtcg caccctccgt gtccgggcct
     3061 ggcgaggggt tgcggaggaa ggtgcggggg cgcggaccgt cgcccagcac caggacatcc
     3121 tcgacgcgct ggtcgcgcgc gatccgagcc gggccgccgc ggccgccctc gtccatgtcg
     3181 cgaccaccga ggcgtggttc cgacaggccg tcgccgatcg actcgcgcct ctgtccgagc
     3241 cggtcgagac ggtcccgccg cagcccgtca ggaaggcccg cccgcgacga tgacggagcc
     3301 gcgccggatc gatgcccatc agcatttctg ggacatcgac agcggtcgct atgcgtggcc
     3361 aacgcccgcc gacgggccga tctaccgaac gtacgcgccg gtcgacctcg agccggagct
     3421 ggcgtcggca ggggtggagg cgaccgtcct cgtccagacg gtcaacacgc tcgacgacac
     3481 cgattcgatg ctctcgacgg cggatcgcca cccgttcgtc ggcgcggtcg tcggctgggt
     3541 gccgctgacc gacgcccgcc tggccgacgc cgcgctcgcg gcgcgtcccc atccgcgact
     3601 ccgcgggatc cggcacctgg tccaccgtga gcccgatccg gcctggctcg tccgtgacga
     3661 tgtcgcggac ggactcgacg tcctagcgcg gcacgggctc gtgttcgagg tcgtggccgt
     3721 gttcccggag cacctgcggc tcgttccggt cgtcgcggac cgtcatcccg acctggagat
     3781 cgtggtggac cacctggcca atccgccgtt ccgctcggct ggcggacaaa gccgccggct
     3841 ggttgttcta tatcgccctg ggcgcggccg tgctcacg
//
LOCUS       DATDDI010000624         3314 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_575181, whole genome shotgun sequence.
ACCESSION   DATDDI010000624 DATDDI010000000
VERSION     DATDDI010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_575181"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1849)
                     /locus_tag="VIU37_08930"
     CDS             complement(<1..1849)
                     /locus_tag="VIU37_08930"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6014120.1"
                     /translation="MRDDRPIFGRDGDGVAWRPSRELVRDSHLARFLRATGEPDLDTL
                     QARAVADPGWFWGAAADDLELAWSRRPSTVLDAGRGPAFARWWLGGELNYARAALDPR
                     VARDPGGAAVTWEGEDGTVRRLTNAELAAEVELAVRRLHAHGVRPGDRVGILLPMLVE
                     TVVAVLALARLQAIYTPIFSGYGAPAIATRLADCEASILVTADGFLRRGAWVDLKAVA
                     DAAVAAAPSVRRVLVVQRAAGAVATPWTDGRDAWWHAPVPGEGDGPAPDAGSTDPETP
                     YMLIYTSGTTGRPKGAVHVHGGFPIKGAQDLAHQFDLGRGDTLFWFTDLGWMMGPWAI
                     SGALLRGAGLVLYEGAPDFPGPDRLWSIVARHRVTHLGLSPTVIRALMAHGEDPVRAH
                     DRTSLRVLGSTGEPWNPDPWWWYFRVVGDGRCPIINYSGGTEVSGGIVSGNVLGPIKP
                     ASFSGPCIGTAADVLDEAGNPVRGSVGELVIRAPMPGMTRGFWRDQEGRYEATYWSRF
                     PGTWLHGDWATIDADGFWYIQGRSDDTLKIAGKRVGPAEVESAAVSHPAVLEAAAIGV
                     PHEIKGEVVVVMVVLRPGETDDPGLRAAVAATVAGQLGKPLRPDRVEVVR"
     gene            complement(1899..2732)
                     /locus_tag="VIU37_08935"
     CDS             complement(1899..2732)
                     /locus_tag="VIU37_08935"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6014121.1"
                     /translation="MRIVVTGGSGKGGAWVVRDLRDHGHDVLNVDTRHDGSDFGLCLL
                     ADLTDLGQTTEALSGADAVVHFAAIPAPGLRPEGETFRNNALSTYNVFAAAVAHGIKR
                     VVWASSETVLGLPFDTPPLFAPIDETIEPRPESSYALSKLVGETMATQFARRSTTSFV
                     GLRISNIMEPDDYARFPSFWQDAHIRKWNLWGYVDARDVAAAARLGLDAEVDGAEVCI
                     VAASDTVMTRPSADLMAEVFPTVPLRRAVRGRETLLSIDRARRVLGYEPTHRWEDHVS
                     H"
     gene            complement(2799..>3314)
                     /locus_tag="VIU37_08940"
     CDS             complement(2799..>3314)
                     /locus_tag="VIU37_08940"
                     /inference="COORDINATES: protein motif:HMM:NF016121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEY6014122.1"
                     /translation="ALVLLFNFKTPDQLPVSGGIASTDGSLSANGGTSGSSGSTGSAT
                     NGTSSGGTSSAGTTTAGSSATPSARTGSRTGTETLTGGVFASRYGNTQVQVTITNGQI
                     TSVTALQLPTGGRSGQSYQYVEPILSSEALTAQSANIDIVSGATYTSEAYAQSLQSAL
                     DQAAVSTAPAG"
BASE COUNT          464 a         1203 c         1208 g          439 t
ORIGIN      
        1 cccgcacgac ctcgacgcga tcgggccgga gcggcttgcc gagctggccc gccacggtcg
       61 cggcgaccgc agcccgcagc cccgggtcgt ccgtctcgcc gggccggagg accaccatca
      121 cgaccaccac ctctcccttg atctcgtgcg ggacgccgat cgcggccgcc tcgaggacgg
      181 ccgggtggga cacggcggcg ctctccacct cggccgggcc gactcgcttg ccggcgatct
      241 tgagcgtgtc gtcgctccgt ccctggatgt accagaaccc gtccgcgtcg atcgtcgccc
      301 agtcgccatg cagccaggtg ccgggaaacc gggaccagta ggtcgcttcg tagcgacctt
      361 cctgatcgcg ccagaagcca cgggtcatgc ccggcatcgg cgcgcggatc accagctcgc
      421 cgaccgagcc gcggaccggg ttcccggcct cgtccaggac gtcggccgcg gtcccgatgc
      481 acgggccgga gaacgacgcc ggcttgatcg gcccgaggac gttcccgctg acgatcccgc
      541 ccgagacctc cgtgccgccc gagtagttga tgatcgggca gcggccgtcg ccgacgacgc
      601 ggaagtacca ccaccagggg tccgggttcc agggctcgcc ggtggagccc aggacccgga
      661 gcgacgttcg atcgtgggcc cggaccgggt cttcgccgtg ggccatcagc gcccggatca
      721 ccgtcggcga caggcccagg tgggtgaccc ggtggcgcgc cacgatggac cacagccgat
      781 cgggtcccgg gaagtcgggc gcgccttcgt acaggacgag cccggcgccg cgcagcagcg
      841 cgccagagat cgcccacggt cccatcatcc agccgagatc ggtgaaccag aacagcgtgt
      901 cgccgcgccc caggtcgaac tggtgggcga ggtcctgcgc ccccttgatc gggaacccgc
      961 cgtggacgtg cacggcgccc ttgggccggc cggtcgtgcc ggacgtgtag atgagcatgt
     1021 acggcgtctc ggggtcggtg ctgccggcgt ccggcgcggg accgtcgcct tcgcccggca
     1081 ccggcgcgtg ccaccaggcg tcgcggccgt cggtccaggg cgtggccacc gcgcccgcgg
     1141 cacgctgcac gaccagcacg cggcggaccg acggggcagc cgccacggcc gcgtcggcga
     1201 cggccttgag gtcgacccag gcgccgcgac gcaggaagcc gtccgcggtg acgaggatcg
     1261 aggcctcgca atcggccagc cgcgtcgcga tggcgggcgc gccgtagccc gagaagatcg
     1321 gcgtgtagat ggcctgcaac cgggcgagcg cgaggaccgc cacgaccgtc tcgacgagca
     1381 tcgggagcag gattcccacc cggtcgcccg gccggacacc gtgggcatgc aggcggcgga
     1441 cggccagttc gacctcggcc gccagctcgg cgttggtcag cctccggacg gtgccgtcct
     1501 cgccctccca ggtgacggcg gccccgccgg gatcccgggc gactctcgga tccagcgccg
     1561 cccgggcgta gttgagctcg ccgcccagcc accagcgggc gaacgcggga ccgcggccgg
     1621 cgtcgaggac ggtcgacggc cggcggctcc aggcgagctc gaggtcgtcg gcggccgcgc
     1681 cccagaacca gccggggtcg gcgaccgcac gcgcctgcag ggtgtcgaga tccggctcgc
     1741 ctgtggcccg caggaaccgg gcgaggtgcg aatccctgac cagctcgcga ctcgggcgcc
     1801 aggccacgcc gtcgccgtcg cgcccgaaga tcggccggtc gtcccgcatc gggacagggt
     1861 acggcagggc ttccgccgtc gggactcgag gcgcgcgtct agtgactgac gtggtcctcc
     1921 caccgatggg tgggttcgta gccgagcact cggcgcgcgc ggtcgatcga cagcagcgtc
     1981 tcgcggcccc ggacggcccg gcggagcggc acggtcggga agacctcggc catgaggtcg
     2041 gcgctcgggc gggtcatcac cgtgtcggag gcggccacga tgcagacctc ggccccgtcg
     2101 acctcggcat cgaggccgag ccgtgccgcc gccgcgacgt cgcgcgcgtc gacgtagccc
     2161 cacaggttcc acttgcggat gtgcgcgtcc tgccagaagc tcgggaaccg ggcgtaatca
     2221 tccggctcca tgatgttcga gatccgcagc cccacgaagc tcgtcgtgct ccgccgcgcg
     2281 aactgcgtcg ccatcgtctc gccgaccagc ttcgacaacg catacgacga ctcggggcgc
     2341 ggctcgatcg tctcgtcgat cggggcgaac agcggcgggg tgtcgaacgg caggccgagc
     2401 accgtctcgc tcgatgccca gacgacccgc ttgatgccgt gagccaccgc ggccgcgaac
     2461 acgttgtacg tcgacagcgc gttgttgcgg aaggtctcgc cctcggggcg cagcccgggg
     2521 gcggggatgg cggcgaaatg gacgaccgcg tccgcgcccg acagcgcctc cgtcgtctgg
     2581 ccgagatccg tcaggtccgc caggaggcac agcccgaagt cgctgccgtc gtggcgggtg
     2641 tccacgttga gcacgtcgtg cccgtggtcg cgcaggtcgc gaaccaccca cgctccgccc
     2701 ttgccgctgc caccggtgac gacgatccgc atggttcgac ctccagggcc gaagtatgcg
     2761 ggaggcgcag gggcgaggcg ccgcaaacct ggcgggcgtc agccggccgg ggcggtcgag
     2821 acggcagcct ggtcgagcgc cgactggagc gactgggcgt acgcctcgct cgtgtaggtc
     2881 gcgcccgaga cgatgtcgat attggcgctc tgcgcggtca gggcctcgct ggacaggatc
     2941 ggctccacgt actggtagct ctggcccgaa cgaccgccgg tcggcaactg gagcgccgtg
     3001 accgacgtga tctgtccgtt cgtgatggtg acctggacct gggtgttgcc gtagcgggac
     3061 gcgaagacac cgccggtcag cgtctccgtc ccggttctgc tgccagtgcg cgccgacggg
     3121 gtcgccgacg agccggcggt ggtcgtcccg gccgatgacg taccgccact cgacgtcccg
     3181 ttggtcgccg agccggtcga accgctcgac cccgaggtgc cgccgttcgc ggacagcgag
     3241 ccatcggtcg aggcgatccc gccgctcacc ggcagctggt cgggtgtctt gaagttgaag
     3301 agcaggacca gggc
//
LOCUS       DATDDI010000625         1814 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_284113, whole genome shotgun sequence.
ACCESSION   DATDDI010000625 DATDDI010000000
VERSION     DATDDI010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284113"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..756)
                     /locus_tag="VIU37_08945"
     CDS             complement(<1..756)
                     /locus_tag="VIU37_08945"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6014123.1"
                     /translation="MATERLPIGVSLRTIRAEPGWWLESARRLDLAGYQGLWAWDHFM
                     GRGDKTVPVVENWTILAMAAAVTTNVTVGPFVANVINRHPALLARMASTLQLAAGGRL
                     ILGIGIGGAKHEHEAYGMGFPEPAERVTRLEEAVAVLRALWTGGPVSRPSPYYPLEDA
                     FARPIPLPPPPILIGGETVAGARLAARIGDGWTTFDNNFEANLPVYLQALAEHGRRRE
                     DQLVIVGFQGADWLSNEAIADTPWVTRPRETWAR"
     gene            complement(756..1604)
                     /locus_tag="VIU37_08950"
     CDS             complement(756..1604)
                     /locus_tag="VIU37_08950"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: protein motif:HMM:NF005876.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017061 - S-methyl-5-thioadenosine
                     phosphorylase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HEY6014124.1"
                     /translation="MAETAEIGVFGGSGFYSLLDEVREVKVDTPYGSPSDSVFLAEVA
                     GRSVAFMPRHGRLHALPPHRINYRANVWALRALGVKAVISPCAAGSLQVHVKPGDFVV
                     CDQFVDRTSGRAQTFYDGPIVTHLSSAEIYDPVLRRLAIDTIRDHGIEVHERGTVVVI
                     EGPRFSTKAESKWFSDAGWEVINMSQYPEAWLCRELGMAVVNISLITDYDAGVHEGTE
                     AVDAMSVLEVFRQNAERIQAVVLDLIGRFPADLDALGAREALAPTRGDGHAMAPEDVR
                     LFETGL"
BASE COUNT          259 a          645 c          644 g          266 t
ORIGIN      
        1 gcgcgcccac gtctcgcgcg gccgggtcac ccacggggtg tccgcgatcg cctcattgct
       61 cagccagtcg gcaccctgga acccgacgat caccagctga tcctcgcggc gccggccatg
      121 ctcggcgagc gcctggaggt agaccggcag gttggcctcg aagttgttgt cgaaggtcgt
      181 ccatccgtcg ccgatccggg cggccaggcg ggcgcccgcc acggtctcgc cgccgatcag
      241 tatcggtggc ggcggcagcg ggatgggccg cgcgaacgcg tcctcgagcg ggtagtaggg
      301 cgacggccgg ctgaccggtc cgccggtcca cagggcccgc aataccgcga ccgcctcttc
      361 gagccgggtg acgcgctcgg ccggttcggg gaaacccatg ccgtaggcct cgtgctcgtg
      421 cttggcgcca ccgatgccga ttccgaggat gagccggccg ccggctgcaa gctggagcgt
      481 cgaggccatc cgggccagca gggccggatg gcggttgatg acgttcgcga cgaacggtcc
      541 gaccgtgacg ttggtggtga ccgccgccgc catggccagg atcgtccagt tctcgacgac
      601 cgggactgtc ttgtcgccgc gccccatgaa gtggtcccac gcccacaggc cctggtaccc
      661 ggcgaggtcg agccgccggg cactctcgag ccaccaaccc ggctcggccc ggatcgtccg
      721 cagggagacg ccgatcggca gccgctcggt cgccactaca gcccggtctc gaacagccgg
      781 acgtcctcgg gcgccatcgc gtgcccgtcg ccgcgagtcg gcgccagcgc ctcgcgcgcc
      841 ccgagggcgt cgaggtcggc cgggaatcgc ccgatcaggt cgagcacgac cgcctggatc
      901 cgttccgcgt tctggcggaa gacctcgagc acgctcatgg cgtcgacggc ctcggtgccc
      961 tcatggacac ccgcgtcgta gtcggtgatc aggctgatgt tgaccaccgc catcccgagc
     1021 tcgcggcaca gccacgcctc ggggtactgg ctcatgttga tgacttccca gccggcatcg
     1081 ctgaaccact tcgattcggc cttggtcgag aagcgcggac cctcgatcac gacgaccgtg
     1141 ccgcgctcgt ggacctcgat cccgtggtcg cggatcgtgt cgatcgccag gcggcgcagg
     1201 accgggtcgt agatctcggc cgaggacagg tgggtgacga tgggcccgtc gtagaaggtc
     1261 tgcgcccgtc ccgacgtccg gtcgacgaac tggtcgcaca cgacgaagtc gccgggcttg
     1321 acgtggacct ggagggaacc ggcggcgcac gggctgatca ccgccttcac cccgagggcg
     1381 cgaagggccc acacgttcgc tcggtagttg atgcggtggg gcgggagggc gtggaggcgc
     1441 ccgtgacggg gcatgaacgc gacgctgcgg ccggcgacct ccgccaggaa gacgctgtcc
     1501 gagggggaac cgtatggtgt gtcgaccttc acctcgcgga cctcgtcgag cagcgagtag
     1561 aagcccgacc ctccgaagac cccgatctcc gccgtctccg ccaccgcccc gaacctccgc
     1621 tgcggccggg tgatgacccg tcccggccga tcgtagcagc gccccttgcc cgtggtggcc
     1681 ggggcgggta cggtccggga atggaggtcc acccgctcgc atcagcggaa gcccctgcgg
     1741 cctcggatgc gcttgagctg acggactggc ggcgccgcat cgcggagctg tacgccgagg
     1801 tgcgcgcgcg ctcc
//
LOCUS       DATDDI010000626         2039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_429777, whole genome shotgun sequence.
ACCESSION   DATDDI010000626 DATDDI010000000
VERSION     DATDDI010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429777"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..605
                     /locus_tag="VIU37_08955"
     CDS             <1..605
                     /locus_tag="VIU37_08955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014125.1"
                     /translation="EGRSLRVPAGNALYVPPGGPEHRLTATAHARIAGFQPIDPSVEI
                     TDQILTEQGYEILGPAAGSGTLPLVAPTSPGRPPRKGAIDARTSSMPPFAVTAVQFGP
                     SSGYTADWCDAPHWGLVTGGQLVIEYEHDVEIVAAGDVYYCPAGEPAHRLEAADPATI
                     VDLTPIEAIVGNQRLAEWRRIAFSQAADLPAEEVSVVALG"
     gene            complement(610..1845)
                     /locus_tag="VIU37_08960"
     CDS             complement(610..1845)
                     /locus_tag="VIU37_08960"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY6014126.1"
                     /translation="MLPHSIGPATRLLACLPLVLAACGPAATASAAATASHGPSTAAI
                     ATPAGSVPTLQVSVVTDGLASPVDVADPGDGSGRRFVVEQAGRIRIVDASGLRERPFL
                     DIAAEVRSGGEQGLLGLAFHPGFPADPRFFVDYTDGNGNTVISEFRVSASDPDAADRG
                     SERPLLHVDQPYPNHNGGALAFGPDGFLYVGMGDGGSGGDPLGNGQRTDTLLGKVLRI
                     DVDRQAAGSERGYGIPDDNPYAGVAGAFPEIWATGLRNPWRFRFDPATGDLWIGDVGQ
                     SAWEEIDVAGAGEGGLDFGWNRMEGFHCFAPSQGCDQTGLTLPVAEYGHDLGCAVIGG
                     VVVRDPGQPALDGRYVFSDSCSGRLWLLDAAGAGRREPVVAGQAGGSISSIIQAADGG
                     ILATDLQNGRLLAVTAPAP"
BASE COUNT          285 a          751 c          740 g          263 t
ORIGIN      
        1 acgagggcag gtccctgcgc gtccccgccg gcaacgcgct gtacgttcct cccgggggac
       61 ccgagcaccg gctgacggcg acggcccacg cccgcatcgc cgggttccag ccgatcgatc
      121 cgtccgttga gatcaccgac cagatcctga ccgaacaggg gtacgagatc ctcggacccg
      181 ccgccggcag cgggacgctg ccgctcgtcg caccgacctc gccgggtcgg ccgccgcgga
      241 agggtgccat cgatgcccgc acctcgtcga tgcctccctt tgccgtgacc gcggtgcaat
      301 tcggaccgtc cagcggctac accgcggact ggtgcgacgc gccgcattgg ggcctcgtga
      361 ccggcggcca gctggtgatc gaatacgagc acgatgtcga gatcgtcgcg gccggcgacg
      421 tctactactg cccggcgggc gagcccgccc accggctcga ggccgccgat ccggccacga
      481 tcgtcgacct cacgccgatc gaggcgatcg tcggcaatca gcggctcgcc gagtggcggc
      541 gcatcgcgtt cagccaggcg gccgacctcc ccgcggagga agtctcggtg gtcgccctcg
      601 gctgagcgtt cagggcgccg gcgccgtgac cgccagcagc cggccgttct ggaggtcggt
      661 ggcgaggatg cccccatccg cggcttggat gatcgagctg atcgaaccgc cggcctggcc
      721 ggcgaccacg ggctcgcgac ggcccgcgcc ggcagcgtcg agcagccaga gccggcccga
      781 gcacgagtcc gagaagacgt accgtccgtc gagtgccggc tgacccggat cgcgcacgac
      841 caccccgccg atgacggcgc agccgaggtc gtggccgtat tccgcgaccg gcagggtgag
      901 gccggtctgg tcgcagccct ggctcggggc gaagcagtgg aagccctcca ttcggttcca
      961 gccgaagtcg agcccgccct cgccggcccc ggccacgtcg atctcttccc aggcgctctg
     1021 tccgacgtcg ccgatccaca ggtcgccggt ggcggggtcg aaccggaatc gccaggggtt
     1081 gcgcagcccc gtcgcccaga tctcggggaa cgcgccggcc acgcccgcat acgggttgtc
     1141 gtcggggatg ccgtacccgc gctcggagcc ggccgcctga cgatcgacgt cgatgcggag
     1201 gaccttgccg agcagggtgt ccgttcgctg gccgttgccg agggggtcac cgcccgagcc
     1261 gccgtcgccc atcccgacat acaggaaacc gtcggggccg aacgcaagcg cgccgccgtt
     1321 gtggttcgga tagggctggt ccacgtggag cagcggccgc tccgacccgc gatcggcggc
     1381 gtccgggtcg gaggcggaca cccggaactc cgagatcacg gtgttgccgt tgccgtcggt
     1441 gtagtcgacg aagaagcgcg ggtcggccgg gaagcccgga tggaaggcga gacccagcag
     1501 cccctgctcg ccaccgctcc tgacctccgc cgcgatgtcg aggaacggtc gctcccgcag
     1561 gccggaggcg tcgacgatcc ggatccggcc cgcctgctcc accacgaagc ggcgaccgct
     1621 gccgtcgccc gggtccgcga cgtccaccgg gctcgccagc ccgtccgtca cgacgctgac
     1681 ctggagcgtc gggacggaac cggcgggtgt ggcgatcgcg gccgtggacg ggccgtggct
     1741 agccgtcgcg gccgcgctcg ccgtcgcggc cggcccgcac gccgccagca cgagcgggag
     1801 gcacgccagc agccgcgtcg ccggcccgat ggagtggggg agcatcgtcg gatgctaccg
     1861 cgggtcgccg gggccgcccg acgtcgtagc atccggtcga gcgcacgaga ggagcgagat
     1921 ggacgcctgg gacctggcca cgatcgatgc cgaccgcgga accgccggtc agcgctaccg
     1981 cgagttcctg cgcgtgccgg atctctcggc cgggctgtac gtgctggagg cgggcgccg
//
LOCUS       DATDDI010000627         1842 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_200961, whole genome shotgun sequence.
ACCESSION   DATDDI010000627 DATDDI010000000
VERSION     DATDDI010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200961"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..798)
                     /locus_tag="VIU37_08965"
     CDS             complement(<1..798)
                     /locus_tag="VIU37_08965"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014127.1"
                     /translation="MPPNGTVADRPASPSPVGVAVPEVQPRPTRLSSLDIRPVIRRYP
                     RQYWLMVVGILLSNAGGGLVWPYLLIFASGRLQLPLAAVGSLITIQAVAGMASSFVAG
                     ALADRFGRKPVMVASLVLSGCVYLLLSGANSYAEFAVLMGLLGIGNPMYQVGADAMLA
                     DMIPAEQRSQAYAINRIASNAGFGLGPAIGGFLAATSYSLAFYGAATGFLAYAFLCAL
                     FARETLGRHLAAAAPDPAHAFEGRGSVRALRLGGFGAVFGDRTYLAFA"
     gene            complement(936..>1842)
                     /locus_tag="VIU37_08970"
     CDS             complement(936..>1842)
                     /locus_tag="VIU37_08970"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY6014128.1"
                     /translation="FLDSTPDSVYVKDRQARIRRASRTMARNVGYDEPDNLIGKSDTD
                     LFGAEFGARTRIEDLRVMDTDEPISGLIESRPLPDGRVNWTHTSKLPLHDEAGRVVGL
                     LGVTREINDLKQAEMSLHYLATHDPLTSLPNRYLMMDRLGHVLARAKRDRQPFAVLFL
                     DIDDFKTINDTAGHNAGDQVLRAVAERLVAGIRASDTVARLGGDEFVLVLEETERDGA
                     CRVADKVRATVAAPIRRRRSSLTATCSIGISLYPNNAGDAQALITAADYAMYLAKKHG
                     KDRYEVCPDQGKPARSRPGTGPTRR"
BASE COUNT          289 a          623 c          659 g          271 t
ORIGIN      
        1 ggcgaaggcc aggtacgtcc ggtcgccgaa gaccgcgccg aacccgccga gccgcagagc
       61 ccgaacgctt ccccgccctt cgaatgcgtg cgccggatcc ggcgcggcgg ccgcgaggtg
      121 tcggcccagc gtctcgcggg caaagagcgc gcagaggaac gcataggcca gaaacccggt
      181 cgccgcaccg tagaacgcca ggctgtacga cgtggcggcg agaaacccgc cgatcgccgg
      241 cccgagcccg aaccccgcgt tcgacgcgat ccggttgatc gcgtacgcct gggatcgctg
      301 ctcggccggg atcatgtcgg ccagcatcgc gtccgcaccg acctggtaca tcgggttgcc
      361 gatgccgagg agccccatca ggaccgcgaa ctcggcgtag ctgttggcgc cggacaggag
      421 gaggtacaca cagccgctca gcacgaggct cgcgaccatg acgggcttcc ggccgaaacg
      481 atcggccagc gcaccggcca cgaacgagga cgccatcccg gcgacggcct ggatcgtgat
      541 cagcgagccg accgcggcaa gcggcagctg caggcggccg ctcgcgaaga tcaggaggta
      601 cggccagacg aggcccccgc cggcattgct gagcaggatc ccgacgacca tgagccagta
      661 ctggcgcggg tatcgacgga tgaccggtcg gatgtcaagc gacgagagac gagtgggtcg
      721 tggctggacc tcgggcacgg ccacgccgac cggggatggc gaggcgggac ggtcggcgac
      781 ggtgccgttg ggcggcatga cactcctcga cgcgcgccgg cgccgcttgc ggatgggacg
      841 atccagaccg tgcaatccac gcgtgcctgc gtcaagagtc gcacgtcacg acgacccaag
      901 gccaccagcc acgcgacgga tgcgccgact cgaggctacc gcctggtcgg tccggtgccc
      961 ggcctcgagc gtgcaggctt gccctgatcc gggcagacct cgtagcggtc cttgccatgc
     1021 ttcttggcca ggtacatcgc gtagtcggcg gcggtgatca gggcctgcgc gtcgccggcg
     1081 ttgttcggat agaggctgat cccgatgctg caggtcgccg tcaggctcga gcggcgccgc
     1141 cgaattgggg cggcgacggt tgcccggacc ttgtccgcga cccggcacgc gccgtcgcgc
     1201 tcggtctcct cgaggacgag cacgaattcg tcaccgccga gacgcgcgac ggtgtcgctg
     1261 gcgcgaatgc ccgccacgag ccgctcggcg accgcacgaa gcacctgatc gccggcattg
     1321 tgcccggccg tgtcgttgat ggtcttgaag tcgtcgatgt ccaggaacag gacggcgaac
     1381 ggttggcggt cccgctttgc ccgggccagg acgtggccca gccgatccat catcaggtag
     1441 cggttgggca gcgacgtcag cgggtcgtgc gtggcgaggt agtgcaggct catctcggcc
     1501 tgcttgagat cgttgatctc gcgggtcacg ccgagcagcc ccacgacgcg tccggcctcg
     1561 tcgtgcagcg ggagcttgga ggtgtgggtc cagttcacgc gaccgtcggg cagcggtcgg
     1621 ctctcgatga gcccgctgat cggctcgtcg gtgtccatga cgcgcaggtc ctcgatgcgg
     1681 gtccgcgcgc cgaactccgc cccgaacagg tctgtgtcgc tcttgccgat caggttgtcg
     1741 ggctcgtcgt agccgacgtt cctggccatg gtccggctgg cccggcggat ccgcgcctgc
     1801 cggtccttga cgtagacgct gtccggcgtc gaatcgagga ac
//
LOCUS       DATDDI010000628         3685 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_638014, whole genome shotgun sequence.
ACCESSION   DATDDI010000628 DATDDI010000000
VERSION     DATDDI010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_638014"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /gene="serA"
                     /locus_tag="VIU37_08975"
     CDS             complement(<1..1154)
                     /gene="serA"
                     /locus_tag="VIU37_08975"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: protein motif:HMM:TIGR01327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEY6014129.1"
                     /translation="MRILVAEPIAAEGVALLQTSHEVDVRPGLSRDELCAILPEYDAL
                     IVRSQVKVDAGLIAAGTRLVVIGRAGVGVDNVDLDAATRAGIMVVNAPTGNTIAAAEH
                     TLALLYGVARRTAAADASVRRGEWKRAQFTGLELRGRTLGIVGLGKIGQAIAARALAM
                     EMTVLAVDPFVTAGQAANHGVELVDFDAMLARADVVTVHVPLTRSTRGLIGREAIARL
                     KPGSIVLNVARGGVIDEAAVAEALESGHLGGAGIDVFEHEPPADSPLLTAPNTLLTPH
                     LGASTAEAQILVAEEVAAQVLDVLDGRSARYAVNAPLLTPETARAIAPYLPLAEVLGR
                     FFAQFSRGGVTTLTLEIAGELADHDGTPLTAAVLRGLLETATTERVNLVNA"
     gene            complement(1151..2344)
                     /locus_tag="VIU37_08980"
     CDS             complement(1151..2344)
                     /locus_tag="VIU37_08980"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HEY6014130.1"
                     /translation="MDRFEPNLRIPGPTGLPPSVREAGARQMINHRGPEFAAMLGRIL
                     TGMQPFFGTTGDIAIVTTAGTGGLEAAVVNTLSPGDRVLGVSIGAFGDRFAKIARTYG
                     ADVTKLDVEWGQAADPAALRAELERDHGYKAVLLTHNETSTGVMNPIPQLAAVIREVA
                     PDALILVDSVSGLGAVPFEMDAWGVDVVVTGSQKAWMSAPGLAMIAASPRAWTAMETA
                     TMPRVYLDLRAHRESHAAGQTPWTPALAVLYQVDEGIRLMQADGAAAVFARHAACAAA
                     ARAGLTALGFQLFADQRFASKTVTAAHVPDDLDWKAFNSEVKRRGLVLAGGQGKLTGK
                     IFRLGHLGSVTVEEILGAMSVLEFVSIGFGRPVTPGAAVAAAQVAALESFGVVTPAAA
                     GAGAS"
     gene            2430..2681
                     /locus_tag="VIU37_08985"
     CDS             2430..2681
                     /locus_tag="VIU37_08985"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HEY6014131.1"
                     /translation="MTTRRTTILADADLLERLERHANRARTTKTAVIAAALEAYLAEH
                     EATPELGFLAVGKSAHGRLSLDGRSIVRREVGRRPGDGR"
     gene            2709..3122
                     /locus_tag="VIU37_08990"
     CDS             2709..3122
                     /locus_tag="VIU37_08990"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEY6014132.1"
                     /translation="MAILLDASIVLAAADRADLNHAAALAWFGRAHEPLLLGALTLAE
                     LDVLLQRELGVAASLALVESIAGGAIRLVGPSQADLRRAMELMASTAEHHPRLADAVL
                     VAAAERLGVHRIATFDRRPIAVFRPRHVKAFDLEP"
     gene            3273..>3685
                     /locus_tag="VIU37_08995"
     CDS             3273..>3685
                     /locus_tag="VIU37_08995"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY6014133.1"
                     /translation="MATELIADRYRLLERHGVGGMAAVWRAHDERTGEQVALKQIHPH
                     LVADPTARARLEREAEALRLVDHPAIARPREVIDDPDRPALVMDFVEGRPLADRIADG
                     PLPVEEAVAIAATIADALAVAHAHGIVHRDIKPAN"
BASE COUNT          497 a         1338 c         1344 g          506 t
ORIGIN      
        1 gcgttgacca ggttgacccg ttcggtcgtc gcggtctcga gcagcccgcg caggacagcc
       61 gcggtcagcg gcgtcccgtc gtgatcggcc agctcgccgg cgatctcgag cgtcagcgtc
      121 gtgacgccgc cgcgcgagaa ctgggcgaag aaccgcccga ggacctcggc cagtggcagg
      181 tagggcgcga tcgcgcgtgc cgtctcgggt gtcagcagcg gtgcgttgac cgcgtacctg
      241 gcactccgcc cgtcgaggac gtcgagcacc tgggcggcga cctcctcggc gaccaggatc
      301 tgcgcctcgg cggtcgaggc gccgagatgc ggtgtcagga gcgtgttcgg tgccgtcagg
      361 agcggtgaat cggccggcgg ctcgtgctcg aagacgtcga tcccggcccc gcccaggtgc
      421 ccggattcga gcgcctcggc caccgccgcc tcgtcgatca cgccaccgcg cgcgacgttg
      481 agcacgatcg agcctggctt gagcctggcg atcgcctcgc gcccgatcag gccgcgtgtc
      541 gaccgggtca acgggacgtg gaccgtgacg acgtcggccc gggcgagcat cgcgtcgaag
      601 tcgaccagct cgacgccgtg gttggccgcc tgcccggccg tcacgaacgg gtcgacggcc
      661 aggacggtca tctccatggc gagtgcccgg gccgcgatgg cctggccgat cttgccgagc
      721 ccgacgatgc cgagcgtccg gccgcggagc tcgagaccgg tgaactgcgc tcgtttccac
      781 tcgccgcgtc ggaccgaggc gtccgccgcg gccgtccgac gggcgacgcc gtagagcagc
      841 gcgagggtgt gctcggcggc cgcgatcgtg ttgcccgtcg gggcgttgac gaccatgatc
      901 ccggcccggg tcgccgcgtc gagatccacg ttgtcgacgc cgacccccgc ccggccgatg
      961 accaccaggc gcgttcccgc ggcgatcagg ccggcgtcga ccttgacctg gctgcggacg
     1021 atcagggcgt cgtactcggg caggatcgcg cacagctcgt cccgcgacag accggggcgg
     1081 acgtcgacct cgtggctcgt ctgcaggagc gcgacgccct cggcggcgat cggctcggcg
     1141 accaggattc tcatgacgca ccggctccgg cggcggccgg cgtcaccacg ccgaaggatt
     1201 cgagtgcggc cacctgcgcg gcggccacgg ccgcgccggg cgtcaccggc cggccgaacc
     1261 cgatcgagac gaattcgagg acgctcatcg ccccgaggat ttcctcgacc gtgacggagc
     1321 ccaggtgacc gagccggaag atcttgccgg tcagcttgcc ctggccgccg gcgaggacca
     1381 gcccgcgccg cttgacttcg ctgttgaacg ccttccagtc gagatcgtcc ggcacgtggg
     1441 ccgcggtgac ggtcttcgac gcgaagcgct ggtcggcgaa cagctggaag ccgagcgcgg
     1501 tgagccccgc acgggccgcc gcggcgcacg ccgcgtgccg cgcgaagacc gcggcggcgc
     1561 cgtcggcctg catcaggcga atgccctcgt caacctggta gaggactgcc agcgccggcg
     1621 tccacggggt ctgtccggcg gcatggctct cgcgatgggc gcgcaggtcg aggtagaccc
     1681 gcggcatggt cgcggtctcc atcgccgtcc aggcccgcgg cgacgcggcg atcatggcca
     1741 gcccgggcgc ggacatccac gccttctgcg aaccggtgac gaccacgtcg acgccccagg
     1801 cgtccatctc gaacgggacc gcgccgaggc cggacacgct gtcgacgagg atcagcgcgt
     1861 cgggcgcgac ctcgcggatc acggcggcca gctgggggat cgggttcatg acgccggtcg
     1921 aggtctcgtt gtgggtgagg aggacggcct tgtagccgtg gtcgcgctcg agctcggcgc
     1981 ggagcgccgc cggatcggcg gcctggcccc actcgacgtc gagcttggtg acgtctgccc
     2041 cgtaggtccg ggcgatcttg gcgaaccggt cgccgaaggc gccgatcgac accccgagga
     2101 cgcgatcgcc cggtgacagg gtgttgacca cggccgcctc gaggccgccg gtgcccgccg
     2161 tggtgacgat cgcgatgtcg ccggtcgtcc cgaagaaggg ctgcatcccg gtcaggatcc
     2221 ggccgagcat cgccgcgaac tcgggtcctc ggtgattgat catctgccgg gcgccggcct
     2281 cgcggacgct cgggggcagg cccgtcgggc cggggatgcg caggtttggc tcgaagcggt
     2341 ccacggggtc ctcctgggtg gcggcagggc gtgcgcggat ggtcgcatgg gttgacgtcg
     2401 gcgcgccacc ctgtcatata tgccggcata tgaccacccg acgcacgacg atcctcgccg
     2461 acgccgatct cctcgaacga ctcgaacgac acgcgaaccg cgcccggacc acgaagacgg
     2521 cggtcatcgc ggccgccctc gaggcctacc tcgccgagca cgaggccact ccggagcttg
     2581 gattcctggc ggtcggcaag agcgcgcacg gccggctgtc gctcgacggc cggtcgatcg
     2641 tgcgacgcga ggtcggccgc cgcccgggcg acggccgctg acggcggtcc cctccgcacg
     2701 ccctgccgat ggccatcctg ctcgacgcga gcatcgtgct cgccgcggcc gatcgcgccg
     2761 acctcaatca cgcggccgcc ctggcgtggt tcggacgggc gcacgagccc ttgctgctgg
     2821 gggcgctgac gctcgccgag ctcgacgtcc tcctgcagcg cgagctgggc gtggccgcca
     2881 gcctggccct cgtcgagtcg atcgccggcg gggcgatccg gctggtgggt ccgtcccagg
     2941 ccgatctccg gcgggcgatg gagctcatgg cctcgaccgc cgaacaccac ccgcgcctgg
     3001 ccgacgccgt cctcgtcgcc gccgccgagc ggctcggcgt ccaccggatc gcgaccttcg
     3061 accgccgccc gatcgcggtg ttccgtccgc gccacgtcaa ggccttcgac ctcgagccgt
     3121 gagcggcttg agccgtgacc tgctcgagcc gtgacccggg cttgagccgc gacccggctc
     3181 gagccgcggg cgctcgtgat tgtcacgtcg acgcaacgtg cgaggcgtgc cgccgcacgc
     3241 gagcggacgg cagcgcgtga tccactggcc ggatggccac tgagctgatc gcggaccgct
     3301 accggctgct cgaacggcac ggcgtcgggg gcatggcggc ggtctggcga gcgcacgacg
     3361 agcggacggg ggagcaggtc gcgctcaagc agatccatcc gcacctggtc gccgacccga
     3421 ccgcgcgtgc caggctggaa cgcgaggccg aagcgctgcg gctggtcgac cacccggcca
     3481 tcgcgcgccc gcgcgaggtg atcgacgatc ccgatcgtcc ggcgctggtg atggacttcg
     3541 tcgaaggtcg tccgctggcc gacaggatcg ccgacggacc gttgccggtc gaggaggccg
     3601 tggccatcgc cgccacgatc gccgacgccc tggccgtcgc ccacgcccat gggatcgtcc
     3661 atcgggacat caagcccgcc aacat
//
LOCUS       DATDDI010000629         2303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_429917, whole genome shotgun sequence.
ACCESSION   DATDDI010000629 DATDDI010000000
VERSION     DATDDI010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429917"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..745
                     /locus_tag="VIU37_09000"
     CDS             <1..745
                     /locus_tag="VIU37_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014134.1"
                     /translation="LASSDSDPFVITREETTLTYTGPTVILQGASGVTLSAQLLEDGT
                     TAPVPSGQAIVLSVGGQSCTGFTDSAGNASCSLTFSGALGPEPISATFAGDAYYLPSA
                     DTGKTAIVFAFPTRGAFSLGDLTVAAAGPSTNVTWWSDSWSKANSMTGGPGPASYKGF
                     DGTVSTLPASSPATVCGTTFTTDPGNSPPPTGSVPSYMGVLVTDSVTKSGSTISGHWG
                     AIVVVKTDAGYAPSPGHPGTGTIVATFCP"
     gene            complement(804..1703)
                     /locus_tag="VIU37_09005"
     CDS             complement(804..1703)
                     /locus_tag="VIU37_09005"
                     /inference="COORDINATES: protein motif:HMM:TIGR03560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03560 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY6014135.1"
                     /translation="MKIGTIVPQGWVGEYDGWDPVEAWQRTTHLAQEADRLGFESVWL
                     FDHFHTIPRPTDEITFESFTALAALAAVTRRVRLGHVVICTGFRNPALTAKMISTMDT
                     ISGGRMELGIGAGWKRDEWVGYGYGFPETKERLARLADDLEVITRMLAGDRHQHATYE
                     GRYARVNDARNVPKPIQRPRVPIMIGGNGPNVTWRLAARHADELNVDGMSPDDVAAAL
                     PVIRSRCEEIGRDPATLAVSVHLWGEHLARTGRPRVDLLAAYAELGVSRVMGLDQAIA
                     GSDEALESLAADARAAGIEMAAG"
     gene            complement(1790..>2303)
                     /locus_tag="VIU37_09010"
     CDS             complement(1790..>2303)
                     /locus_tag="VIU37_09010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014136.1"
                     /translation="FTLELTATQAADLSAAALSGDVGVTVEARVPVAPSSLRSHPAVT
                     LGRATLAQPIASDRIVEVNLTATFAEGAPDGCYDLVEVVPSGLAPLDVGWGATDDRGI
                     TWPWSVSGQEVRFCAGNDPATGRVAKLRYLARVVNEGWFTWEPAILQLASAPELMAVT
                     PAWTARIGTP"
BASE COUNT          326 a          846 c          804 g          327 t
ORIGIN      
        1 cctggccagc agcgacagcg atccgttcgt gatcaccaga gaggagacga ccctgacgta
       61 caccggcccg accgtcatcc tccagggcgc ctccggcgtg acgctgtcgg cgcagctgct
      121 cgaggacgga acgacagcgc ccgtcccgtc cggccaggcg atcgtgctgt ccgtcggcgg
      181 ccagagttgc accgggttca cggacagcgc cgggaacgcg agctgcagcc tcacgttcag
      241 cggggccctg ggccccgagc cgatctcggc gacgttcgcc ggggacgcct actacctgcc
      301 gtcggccgac acgggcaaga ccgcgatcgt gttcgcgttc ccgacccgcg gcgcgttcag
      361 cctcggcgac ctgaccgtgg cggccgccgg tccgtccacg aacgtgacct ggtggagcga
      421 ctcgtggtcg aaggcgaact cgatgaccgg cgggcccggc ccagcctcgt acaagggctt
      481 cgacgggacc gtctcgacgc tgccggccag cagccccgcg acggtctgcg ggaccacgtt
      541 cacgaccgat cccgggaaca gcccgccacc gaccggcagc gtcccctcgt acatgggcgt
      601 cctggtgacg gattcggtca cgaagtccgg ctcgacgatc agcggccact ggggcgccat
      661 cgtcgtcgtc aagaccgacg ccggctacgc gccgagcccg ggccatcccg gcacgggcac
      721 gatcgtggcc acgttctgtc cgtagtcgat cgccgtcgcg gcggggcgcc tgccaaccgc
      781 cccgccgcgt gcgagcgccg gcctcagccg gcagccatct cgatgccggc cgcccgcgcg
      841 tccgcggcaa gcgactccag ggcttcgtcc gatcccgcga tcgcctggtc gaggcccatg
      901 acccggctca cgcccagctc ggcgtaggcg gccaggaggt cgacccgcgg ccggccggtc
      961 cgcgccaggt gctcgcccca gaggtggacc gagaccgcga gcgtggccgg gtcgcgcccg
     1021 atctcctcgc accggctgcg gatgaccggg agcgcggccg ccacgtcatc cggggacatc
     1081 ccatccacgt tgagctcgtc ggcatgccgg gccgcgagcc gccaggtcac gttggggccg
     1141 ttcccaccga tcatgatcgg cacccgcggc cgctggatcg gcttgggcac gttccgggcg
     1201 tcgttgaccc tggcgtaccg gccctcgtac gtggcgtgct ggtggcgatc gccggcgagc
     1261 atcctcgtga tgacctcgag gtcgtcggcc aggcgcgcca gccgctcctt cgtctcgggg
     1321 aagccgtagc cgtagccgac ccattcgtcg cgcttccagc cggcgccgat gccgagctcc
     1381 atccgcccgc cgctgatggt gtccatggtc gagatcatct tggccgtcag cgccgggttg
     1441 cggaacccgg tgcagatcac gacgtgcccc agccggacgc gccgggtgac ggccgcgagc
     1501 gccgccagcg ccgtgaacga ttcgaacgtg atctcgtcgg tcggacgagg gatcgtgtgg
     1561 aagtggtcga acagccagac gctctcgaac ccgagccggt ccgcttcctg cgccaggtgc
     1621 gtcgtgcgct gccacgcctc gaccggatcc cagccgtcgt actcgccgac ccagccctgg
     1681 ggaacgatgg tcccgatctt catctgtctg cctcctcgtc acggcgagcc tgtcatcgac
     1741 ctgtcccgca aatggtcgca gggatcgagg atgccgatcg ggggacgcgt cagggcgtcc
     1801 cgatccgggc ggtccaggcg ggcgtgacgg ccatcagctc aggagcgctg gcgagctgca
     1861 ggatcgccgg ctcccacgtg aaccatccct cgttgacgac cctggccagg tagcggagct
     1921 tcgcgacccg gccggtcgcc ggatcgttgc cggcgcagaa gcggacctcc tggccgctga
     1981 cgctccaggg ccaggtgatc ccgcgatcgt cggtcgcgcc ccagccgaca tcgagcggcg
     2041 cgaggccgga cggcacgacc tcgacgaggt cgtagcagcc gtcgggggcg ccttcggcaa
     2101 acgtggcggt gaggttcacc tcgacgatgc ggtccgacgc gatcggttgc gccagggtgg
     2161 cacgtccgag cgtcacggcc ggatgcgaac ggagactcga cggcgcaacc ggcactcgtg
     2221 cctcgaccgt gacgccgacg tcgccggaga gcgccgctgc cgagaggtcc gcggcctggg
     2281 tcgcggtcag ctcgagcgtg aag
//
LOCUS       DATDDI010000630         1744 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_325779, whole genome shotgun sequence.
ACCESSION   DATDDI010000630 DATDDI010000000
VERSION     DATDDI010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325779"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..718
                     /locus_tag="VIU37_09015"
     CDS             <1..718
                     /locus_tag="VIU37_09015"
                     /inference="COORDINATES: protein motif:HMM:NF015755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEY6014137.1"
                     /translation="PRDLVDTPLGDGNAYGPKLNSLLAYADAHHDQFPKGGIRTLEDA
                     IGALLGIPIHYYARIDFVGFIDMVDAVGGVDVTVAKGFQDPGYDGFGFGVRGWSITAG
                     VHHLDGPNALAFARSRKAAGESDFTRAARQQQILVALRDKVTSGGNLLFQLPGLLDAV
                     GRTIRSDVPVDKLPALAAIMEEISHRNVVSAVIRYPLVHPKSTRYGDSQEPDLVAIRR
                     VAAGLFPAPGTAPKGWTPPK"
     gene            complement(727..1290)
                     /locus_tag="VIU37_09020"
     CDS             complement(727..1290)
                     /locus_tag="VIU37_09020"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEY6014138.1"
                     /translation="MFCGASTGRGDAYRALAVAVGTGLAERGIGIVYGGGRVGLMGAL
                     ADAALAAGGEVTGVIPRRLVDRELAHPGLTRLDVVETLHERKARMAELADGFVALPGG
                     LGTLEELSEVASWAQLDIHVKPIGLLGPDGYWAPLMAWLDHAVDEGFVSAAHRRLLQV
                     DADLATLLDRFEAWVPPAERWRTSPGA"
     gene            complement(1302..>1744)
                     /locus_tag="VIU37_09025"
     CDS             complement(1302..>1744)
                     /locus_tag="VIU37_09025"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HEY6014139.1"
                     /translation="GLPTLADDSGSEVDALDGRPGVRTRRYAGEQATDAENNARLLEA
                     LRGLPASRRGARYVCVLTVALPDGPGPRGRLVLVGARGTCRGRIATEPRGTGGFGYDP
                     IFEPASEPPGGRTLGLWTAAEKHAISHRARAARRLAPKLGALGF"
BASE COUNT          242 a          671 c          614 g          217 t
ORIGIN      
        1 tccgcgcgac ctggtcgaca cgccgctcgg cgacggcaac gcctacggcc cgaagctcaa
       61 ttcgctgctc gcgtacgccg acgcccacca cgaccagttc ccgaaaggcg ggatccgcac
      121 gctcgaggac gcgatcggtg cgctgctcgg catcccgatc cactactacg cgaggataga
      181 cttcgtcggg ttcatcgaca tggtcgatgc ggtcggcggc gtggacgtga ccgtggccaa
      241 ggggttccag gatcccggct acgacgggtt cgggttcggg gtgcgcggct ggtcgatcac
      301 ggccggcgtg caccatctcg acggcccgaa cgcgctggcc ttcgcccggt cgcgcaaggc
      361 cgccggcgag agcgacttca cccgcgcggc ccgccagcag cagatcctcg tcgcgttgcg
      421 cgacaaggtc acgagcggcg gcaacctgct gtttcagctg cccggcctgc tggacgccgt
      481 gggccggacg atccggtccg acgtcccggt cgacaagctg cccgcgctgg ccgcgatcat
      541 ggaggagatc tcgcaccgga acgtcgtcag cgccgtcatc cgctacccgt tggtccatcc
      601 gaagtcgacg cgctacggcg actcgcagga gcctgacctc gtggcgatcc gacgggtcgc
      661 ggcaggtctc ttcccggccc cgggcacggc cccgaagggc tggacgccgc cgaagtaggc
      721 ccggcgtcag gcgccgggtg acgtccgcca gcgttcggcc ggcggcaccc aggcctcgaa
      781 gcgatcgagc agggtcgcca ggtcggcgtc cacctggagg aggcgccgat gcgccgccga
      841 gacgaagccc tcgtccaccg cgtggtccag ccaggccatc agcggcgccc agtagccgtc
      901 cggcccgagc aacccgatcg gcttgacgtg gatgtcgagc tgcgcccagg aggcgacctc
      961 ggagagctcc tccagggtcc ccaggccacc gggcagcgcc acgaacccgt cggccagctc
     1021 ggccatcctg gccttgcgct cgtggagcgt ctccacgacg tccagcctgg tcagccccgg
     1081 gtgggcgagc tcgcgatcga ccaggcgccg gggaatgacg ccggtgacct cgccgcccgc
     1141 ggccagcgcc gcgtcggcca gggcgcccat cagccccacc cgtccgccgc cgtagacgat
     1201 cccgatcccg cgctcggcca ggccggtgcc caccgcaacg gcgagcgcgc gataggcgtc
     1261 tccccgtccg gtgctggcgc cacagaacac gcagagccgc atcagaagcc gagcgccccg
     1321 agcttcggcg cgagcctccg ggccgcccgc gcccggtgcg agatcgcgtg cttctctgcc
     1381 gccgtccaca accccagtgt ccgaccgccg ggcggctcgg acgcgggttc gaagatcggg
     1441 tcgtagccga agccgcccgt cccgcgcggc tcggtggcga tccggccacg gcacgtgccc
     1501 cgtgccccca cgaggaccag ccggccgcgc gggcccgggc cgtccggcaa ggccaccgtc
     1561 aggacgcaga cgtagcgcgc gccgcgacgg gacgccggaa ggccccggag cgcctcgagc
     1621 aggcgcgcgt tgttctccgc gtcggtggcc tgctcgccgg cgtaccggcg cgtccggacg
     1681 ccggggcgcc cgtcgagcgc gtccacctcg ctgccggaat cgtccgcgag ggtcggcagg
     1741 ccgg
//
LOCUS       DATDDI010000631         1921 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_180256, whole genome shotgun sequence.
ACCESSION   DATDDI010000631 DATDDI010000000
VERSION     DATDDI010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180256"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1444)
                     /locus_tag="VIU37_09030"
     CDS             complement(<1..1444)
                     /locus_tag="VIU37_09030"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY6014140.1"
                     /translation="MERPHSLYFRYQGHGQLVAKPAAYVALTRGERLLNRIRATVFGR
                     PLSTEEEIGERLSKKKALAIFSSDAISSSAYATEEILRVLVLAGASALLLSVEVAIAI
                     AILLTVVSVSYRQVCRAYPGGGGAYVVARTNLAPIFGLIAAAALLIDYVMTVAVSTAS
                     AIAQIQSVIPAVYDIRIEIAFVSISLITIANLRGLRESGNIFAVPTYLFIGLALAIVA
                     VGAVRILGGTAAAIAPEPDAVPFGTNAIGVLLLLKAFAGGSVALTGVEAIANGVPAFK
                     PPEARNAANTMTAMAVLLGILFIGLTVFAVQFGLRPTLPGGPSIVALAARTAFGDGSV
                     LFVTFAASTALILFLAANTSFNAFPRLAAILAEDGYMPRQFSFRGDRLAYSWGIVLLA
                     GVAFALLAAFGGDTHSLIPLYSVGVFVCFTLSQIGMVRHWRAVRESGWLWRALVNGLG
                     AVLTFVVLVVVASVKFENGAWLVLVLIPTQV"
     gene            complement(1535..>1921)
                     /locus_tag="VIU37_09035"
     CDS             complement(1535..>1921)
                     /locus_tag="VIU37_09035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014141.1"
                     /translation="GINRAVVQAVNFGRALARDIRAVYVTDDLEAADAMRARWERLLP
                     DVPLVIVESPYRAVISPVVAYLDILDMAWPPDKEAPITIVVLPEYVARHWWDRLLYNQ
                     TAKRLKAALVGRERTVIADVPYRRGH"
BASE COUNT          344 a          654 c          680 g          243 t
ORIGIN      
        1 cgacctgcgt cgggatgagg acgaggacga gccaagcgcc gttctcgaac ttgaccgagg
       61 cgacgacgac gaggacgacg aacgtgagga cggcgccgag cccgttcacg agcgctcgcc
      121 acaaccagcc cgactcgcgg accgcgcgcc agtgccggac catcccgatc tgcgacagcg
      181 tgaagcagac gaacacgccg accgagtaga gcgggatcaa cgagtgcgtg tcgccgccga
      241 acgcggccag cagtgcgaac gccactccgg cgagcaggac gatgccccac gaataggcga
      301 gccggtcgcc gcggaacgag aactggcgcg gcatgtagcc atcctcggcg aggatcgccg
      361 ccagccgcgg aaaggcgttg aagctagtgt tcgcggccag gaacaggatc agcgccgtgc
      421 tcgccgcgaa ggtcacgaac aggaccgacc cgtcgccgaa ggccgtccgc gcggcgaggg
      481 ccacgatgga cgggccgccc ggcagcgtgg ggcgcaggcc gaactggacg gcgaacaccg
      541 tcaggccgat gaacaggatc ccgagcagga ccgccatcgc ggtcatcgtg ttcgctgcgt
      601 tcctggcctc cggcggcttg aacgcgggga cgccgttggc gatggcctcg acaccggtca
      661 gcgccaccga accaccggcg aacgccttga gcagcaacag cacgccgatc gcgttggtgc
      721 cgaacggcac ggcgtccggc tccggtgcga tggccgccgc ggtgccacca aggatcctga
      781 ccgcgccgac ggccacgatc gccagcgcga ggccgatgaa caggtacgtc gggaccgcga
      841 agatgttccc ggactcgcgc aggccccgca ggttggcgat cgtgatcagc gagatcgaca
      901 cgaacgcgat ctcgatccgg atgtcgtaga cggccgggat caccgactgg atctgagcga
      961 tcgccgacgc ggtcgacacg gcgaccgtca tgacgtagtc gatcagcagc gccgccgccg
     1021 cgatcaggcc gaagatcgga gcgagattgg tgcgcgcgac gacgtacgcc ccgccgccgc
     1081 cggggtaggc ccggcagacc tgccggtagg agaccgacac gacggtcagc aggatcgcga
     1141 tcgcgatggc cacctcgacc gacagcaaca gcgcgctcgc gccggccagc accagcaccc
     1201 gcaggatctc ctcggtcgcg taggccgacg agctgatcgc gtcggagctg aagatggcca
     1261 gcgccttctt cttcgacagg cgttcgccga tctcctcctc ggtcgacagc gggcgcccga
     1321 agacggtcgc gcggatgcgg ttgagcagac gctcgccgcg cgtcagggcg acgtaggcgg
     1381 ccggcttggc gaccagctgg ccgtgaccct ggtaccggaa gtagagcgaa tgggggcgct
     1441 ccacgcgtac ccgccgatcc gctggtttga caccccgaag cgggcgtcgt cctccgatca
     1501 attccgctcc gatgcgcttg ggcgatggtg agggtcagtg accgcgtcgg taggggacgt
     1561 ccgcgatgac cgtgcgctcg cgaccgacca gcgcggcctt gagccgcttg gccgtctggt
     1621 tatacagcaa tcggtcccac cagtggcgcg ccacgtactc gggcaggacg acgatcgtga
     1681 tcggggcctc cttgtctggg ggccaggcca tgtcgaggat gtccaggtac gccacgaccg
     1741 gcgagatcac cgcccggtac ggcgactcga cgatgaccag cggcacgtcg ggcagcagcc
     1801 gttcccagcg ggcgcgcatc gcgtcggcgg cctcgaggtc gtccgtgacg tacacggccc
     1861 ggatgtcgcg ggcgagggcc cggccgaagt tgacggcctg cacgaccgcc cggttgatgc
     1921 c
//
LOCUS       DATDDI010000632         2217 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_741886, whole genome shotgun sequence.
ACCESSION   DATDDI010000632 DATDDI010000000
VERSION     DATDDI010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741886"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VIU37_09040"
     CDS             complement(<1..683)
                     /locus_tag="VIU37_09040"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEY6014142.1"
                     /translation="MPPTNDQPLRIIPLGGVGEIGKNMYVFEYRDEIVVIDCGLMFPD
                     EEMFGIDLVIPDITYLKERRANVKAFLITHAHEDHVGALPYVLPEFPGVPVYASTLAR
                     GLLGNKIKEHKLHNNPLISMEPGDEIDIGAFKVMPFRIGHSIPDAMGIALRTPVGTIV
                     HTGDFKFDHTPVDGKLSDFAILARLGQEGVACLLSDSTRAENPGYTPSERTVGDAFRE
                     IMEPLEGRV"
     gene            complement(703..1554)
                     /locus_tag="VIU37_09045"
     CDS             complement(703..1554)
                     /locus_tag="VIU37_09045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEY6014143.1"
                     /translation="MTDAERRQALETIAAEVRSCTDCRLHEGRTRAVPGEGDPDTEVV
                     FVGEGPGFNEDRLGRPFVGRAGDLLVKLLASIGWRREEVFITNVVKCRPPDNRDPQPD
                     EIAACAKYLHRQLEILDPAVVVTLGRHSMARFMPGARISQAHGTVRAADPSTGARSAT
                     VFAMYHPAAALRTPSIERESFADMAGVPAALIDARRRRDAAPTVTPAPGTEIPASPPG
                     PTQPMGAADLAVPSALEPGVATEPPTVPAEPPALEPSVIEPRPAAPQAPPAPAATEDA
                     TPQLTLF"
     gene            complement(1551..>2217)
                     /locus_tag="VIU37_09050"
     CDS             complement(1551..>2217)
                     /locus_tag="VIU37_09050"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF011456.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEY6014144.1"
                     /translation="ALRDSVGLERVVVDTYQSVSGTGADALAELESQIRAHVSGEPKR
                     ATVYPHPIAFNALPEIDVFLPNGYTKEEWKIVSENRKILGLPELRISCTAVRIPVFVS
                     HSEAVHVETREPVTPERARRLFEAVPGVIVQDDPAEHDYPLATEAAGHDEIYVGRVRG
                     DVSVAGDRGLVFWVVSDNLRKGAATNAVEIAELLRERDWIKPASARDARPYRALGAVE
                     ATA"
BASE COUNT          304 a          718 c          831 g          364 t
ORIGIN      
        1 atcacccggc cttcgagcgg ctccatgatc tcgcggaacg cgtcgccgac cgttcgctcg
       61 gacggtgtgt agccggggtt ctcggctcgg gtcgaatcgg acagcaggca ggcgacgccc
      121 tcctggccga ggcgcgccag gatggcgaaa tcggacagct tcccgtcgac cggcgtgtga
      181 tcgaacttga agtcgccggt gtggacgatg gtcccgacag gcgtccgcag cgcgatgccc
      241 atcgcgtccg ggatcgagtg gccgatcctg aacggcatga ccttgaacgc gccgatgtcg
      301 atctcgtcgc cgggctccat cgagatcagc gggttgttgt ggagcttgtg ctccttgatc
      361 ttgtttccga gcagaccgcg ggccagggtg gacgcgtaga cgggcacgcc cgggaactcc
      421 gggagcacgt acggcagggc gccgacgtgg tcctcgtggg catgggtgat gaggaaggcc
      481 ttgacgttcg cgcggcgttc cttgaggtag gtgatgtcgg ggatgaccag gtcgatcccg
      541 aacatctcct cgtccgggaa catcaggccg cagtcgatca ccacgatctc gtcgcggtac
      601 tcgaagacat acatgttctt gccgatctcc cccaccccgc cgagcgggat gattcggagc
      661 ggctggtcgt tcgtgggtgg catcttggtc cttggcattg ggctagaaga gcgtcagttg
      721 gggggtggcg tcctcggtgg cggccggcgc aggaggtgcc tggggggccg ccgggcgagg
      781 ctcgatgacg gatggctcga gcgccggcgg ctcggccggg acggtcggcg gttcggtggc
      841 gacgccgggt tcgagcgcgg atgggaccgc gaggtcggcg gctcccatcg gctgcgttgg
      901 gcccgggggg gacgccggga tctcggtgcc cggggcgggc gtgacggtcg gggcggcatc
      961 tcgccgtcgc cgcgcgtcga tgagcgccgc gggcactccg gccatgtcgg cgaagctctc
     1021 gcgttcgatc gacggcgtcc ggagcgccgc cgccgggtga tacatcgcga agacggtcgc
     1081 ggagcgggcg ccggtcgatg gatcggccgc acggacggtc ccgtgtgcct gggagatccg
     1141 ggcgccgggc atgaaccgtg ccatcgagtg gcggccgagc gtcacgacga cggccggatc
     1201 gaggatctcc agctgccggt ggaggtactt ggcacaggcg gcgatctcgt cgggctgcgg
     1261 gtcacggttg tcgggcggcc ggcatttcac cacgttcgtg atgaatacct cctcacgccg
     1321 ccagccgatg gacgcgagca gcttgaccag caggtcgccg gcgcggccga cgaacgggcg
     1381 accgagccgg tcctcgttga accccgggcc ctcgcccacg aacaccacct cggtgtccgg
     1441 gtcgccctcc cccggcacgg cacgggtgcg tccctcgtgg agccggcagt ccgtgcacga
     1501 tcgaacctcg gcggcgatcg tttcgagcgc ctgccggcgc tcggcgtcgg tcacgccgtg
     1561 gcctcgacgg ctccgagggc ccggtacgga cgggcgtcac gcgccgaagc cggcttgatc
     1621 cagtcgcgtt cccgcaggag ctcggcgatc tcgaccgcgt tcgtggccgc tcccttgcgg
     1681 aggttgtcgg agacgaccca gaagacgagt ccccggtctc cggcgaccga cacgtcgccc
     1741 cggacgcggc cgacgtagat ctcgtcgtgg ccggcggcct cggtggccag cggatagtcg
     1801 tgttcggccg gatcgtcctg gacgatcacg ccggggaccg cctcgaacag gcgccgggcc
     1861 cgctccggcg tgacgggttc gcgcgtctcg acgtggacgg cctcggaatg gctgacgaag
     1921 accgggatcc ggacggccgt gcaggagatc cgcagctccg gcaggcccag gatcttgcgg
     1981 ttctcgctga cgatcttcca ttcctccttg gtgtagccgt tggggaggaa gacgtcgatc
     2041 tcgggcaggg cgttgaaggc gatcggatgg ggatagaccg ttgctcgctt gggctcaccg
     2101 ctgacgtggg cgcggatctg gctctcgagc tcggccaggg cgtccgcgcc cgtccccgag
     2161 accgattggt aggtgtcgac cacgacccgc tcgagcccga cgctgtcacg cagcgcc
//
LOCUS       DATDDI010000633         1949 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_138721, whole genome shotgun sequence.
ACCESSION   DATDDI010000633 DATDDI010000000
VERSION     DATDDI010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138721"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VIU37_09055"
     CDS             complement(<1..194)
                     /locus_tag="VIU37_09055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014145.1"
                     /translation="MTASSAAVARARAERWRLFLARTRGFGRRYAGRTDGVTGFAILV
                     LFAGLALAPELFVGPLQTATT"
     gene            complement(191..1165)
                     /locus_tag="VIU37_09060"
     CDS             complement(191..1165)
                     /locus_tag="VIU37_09060"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014146.1"
                     /translation="MGGRYLGRKFAQAFATIIAIVVLNFLLFRLMPGSPERVLFRNPN
                     LSPEVVEAARVRWGLDKPLIPDQLVAYVGSTLTGDLGYSFKFRGQAVTEVIADRVGPT
                     LLLVGLGELVSIVVGLALGSYAGWLRGGRVDRVGNGISLILYSMPYFVIGMPLIIIFA
                     AGLHWFPTSGMQSVGGGAKPFLESMVDLASHLALPLTTVSLGLIGGYSILMRSSIIET
                     RSEDYITTARAKGLTDGRILRSHAFPNALLPMVTLIAINLGYVIAGAITAEVVFSWPG
                     LGTLTVSALQSRDYPILQGIFLLLAVSVVLANLFADLIYGLLDPRVRT"
     gene            complement(1249..>1949)
                     /locus_tag="VIU37_09065"
     CDS             complement(1249..>1949)
                     /locus_tag="VIU37_09065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014147.1"
                     /translation="AAQFIKDWYGQLGVKVQTKVLDSATLTDLLLPPEAGGSGNLAKY
                     DIELWGWSGNPDPNALLQIFRCDEIGNTSDSNYCNPDYDKLYDQESKLSGDARKAILA
                     QMQNLIYDQAPYDVLYYDANLEAYRTDRFAGWRNTPGNGTPLFTYGTLDYTLLTNAAA
                     VASAPPSTEPAASGASAGPAGPSPSAAPAPSPTSSSGDNTVLIVVVVLVIVVVIGGWF
                     VMSRRRAGASAEDE"
BASE COUNT          326 a          640 c          710 g          273 t
ORIGIN      
        1 gtcgtggccg tctggagggg tccgacgaac agctcgggcg ccagcgcgag accggcgaac
       61 agcaccagga tcgcgaaccc ggtcacaccg tcggtccgcc cggcgtagcg ccggccaaag
      121 ccgcgcgtcc gggccaggaa caggcgccag cgctcggccc gggcgcgggc gacggcggcg
      181 ctcgaggcgg tcatgtccgc acccgcgggt cgaggaggcc gtagatgagg tcggcgaaga
      241 ggttggccag cacgaccgac acggcgagca gcaggaagat cccctgcagg atcgggtagt
      301 cgcgcgactg gagcgccgac accgtcagcg tgcccagccc tggccagctg aagacgacct
      361 cggccgtgat cgcgcccgcg atcacgtagc ccaggttgat ggcgatcagc gtgaccatcg
      421 ggaggagcgc attcgggaac gcgtgcgaac gcaggatccg gccgtcggtc aggcccttgg
      481 cccgcgcggt cgtgatgtag tcctcggagc gcgtctcgat gatcgacgat cgcatcagga
      541 tcgagtagcc gccgatcagg ccgagcgaca cggtggtcag cggcagcgcc aggtggctgg
      601 cgaggtcgac catcgactcg aggaacggtt tcgcgccgcc gcccaccgac tgcatgcccg
      661 acgtcgggaa ccagtggaga ccggccgcga agatgatgat cagcggcatg ccgatcacga
      721 aatacggcat cgagtagaga atcagactga tcccgttgcc cacacggtcg acgcggccgc
      781 cgcgaagcca gcccgcgtac gagccgagcg ccagcccgac gacgatcgac accagctcgc
      841 ccagcccgac caggagcagc gtggggccga cgcggtcggc gatgacctcg gtcacggcct
      901 ggccgcggaa cttgaacgag tacccgagat cgccggtcag cgtcgacccg acgtaggcca
      961 cgagctgatc aggaatcagc ggcttgtcga ggccccagcg gacgcgcgcc gcctcgacga
     1021 cctcaggtga caggttcgga tttcggaaga ggacccgttc cggcgatccc ggcatcagcc
     1081 ggaacagcag gaagttgagg acgacgatcg cgatgatcgt cgcgaacgcc tgggcgaatt
     1141 tgcggccgag gtagcgtccc cccatgcgac gcctggggga tcagcgcgcg gggagggccg
     1201 ccgcgcggcg gccctccggc cctggacgcg accgaccggg aggctcgatc actcgtcctc
     1261 cgcggacgct ccggcgcgtc ggcggctcat gacgaaccag cccccgatca cgaccacgat
     1321 gacgaggacc acgaccacga tgagcaccgt gttgtcgcca ctgctcgagg tggggctcgg
     1381 cgcgggggcc gccgacggcg acgggccggc gggaccggcc gaggcgcccg acgcggcagg
     1441 ttcggtgctc ggcggcgcgc tggcgaccgc ggcggcgttt gtcaggagcg tgtagtcgag
     1501 cgtgccgtag gtgaacaggg gggtcccgtt gccgggcgtg ttccgccagc cggcgaaccg
     1561 atccgtccga tacgcctcga ggttggcgtc gtagtacagg acgtcgtacg gcgcctggtc
     1621 gtagatcagg ttctgcatct gcgcgaggat cgccttgcgg gcatcacccg acagcttcga
     1681 ttcctggtcg tacagcttgt cgtagtccgg gttgcagtag ttgctgtcgg acgtgttgcc
     1741 gatctcgtcg cagcggaaga tctggagcag cgcgttcgga tccgggttgc cggaccagcc
     1801 ccacagctcg atgtcgtact tggcgaggtt gccgctcccg ccggcttcgg ggggcagcag
     1861 caggtcggtc agcgtcgcgc tgtcgaggac cttggtctgg accttgacgc cgagctggcc
     1921 gtaccagtcc ttgatgaact gggcggcct
//
LOCUS       DATDDI010000634         2332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_430081, whole genome shotgun sequence.
ACCESSION   DATDDI010000634 DATDDI010000000
VERSION     DATDDI010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430081"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VIU37_09070"
     CDS             <1..654
                     /locus_tag="VIU37_09070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014148.1"
                     /translation="TTSFALEAVRSVADSWRDEAEGGPSETFTAISSEHGSGLRVVAL
                     TDSPLNTEVLDPGRVAAAIAAARRSFDIIVVDLHPSYSTLNQAIFDEADRILVPVTPD
                     VPAIRAAVQMRDVAAALGCRERLAMVVNRANSGVSVADVERTVGMPAFAQIRSGGMFF
                     VRAANEGRTVIEMFPREKITADFDTLADRVLGVPAKPEPVVRTGFRLPSRARAIARA"
     gene            complement(818..1468)
                     /locus_tag="VIU37_09075"
     CDS             complement(818..1468)
                     /locus_tag="VIU37_09075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014149.1"
                     /translation="MPFDFLRRRKEPTAAAAETAAPSKPVAAGGIAFDGMTEEWRLVG
                     RMLVDGRLSDALNKREPIALADVQWAPIDGNEPLAPAPGIKTVDPYDLVLVLAGEDSL
                     PPMSEQERSAHRVHKVTYEVALEIPPYRVVGTVQLYPGYEPVRLLDRSNDMFLPVLDA
                     TATIDGRTVSPPDAQVILINRAYLRGVDQVDARTGERHEKLPGGSMGGAQWTDKTR"
     gene            complement(1470..>2332)
                     /locus_tag="VIU37_09080"
     CDS             complement(1470..>2332)
                     /locus_tag="VIU37_09080"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6014150.1"
                     /translation="AFMKQGPEIPRRHDLSSLRVLGSVGEPINPEAWMWYREHIGGDR
                     APVVDTWWQTETGQILITPLPGVTTTKPGSATFPFPGIDADVVDADGNSVPRGGGGYL
                     VLKRPWPAMLRGIYGDPARYKETYWSRFPGMYFAGDGAKRDADGYLWLLGRVDDVMNV
                     AGHRISTTEVESALVDHRSVAEAAVVGKKDEISGQAIFAFVILKADQEPSEALALQLR
                     EHVAYVIGPIARPKFLMFVPDLPKTRSGKIMRRLLRDIAEGRVLGDTTTLADATVVDI
                     IRDNTGAAEE"
BASE COUNT          327 a          846 c          801 g          358 t
ORIGIN      
        1 accacgtcgt tcgcgctcga ggccgtccgc tccgtcgccg acagctggcg cgacgaggcc
       61 gaaggcggcc cgtccgagac gttcaccgcg atctcatccg agcacggctc ggggctgcgc
      121 gtcgtcgcgc tcaccgattc gccgctcaac accgaggtgc tcgatccggg ccgcgtggcg
      181 gccgccatcg ctgccgcccg gcggtcgttc gacatcatcg tggtcgatct gcacccgtcg
      241 tacagcacgc tcaaccaggc gatcttcgac gaggcggacc ggatcctcgt tccggtcacg
      301 ccggacgtgc cggcgatccg ggccgcggtc cagatgcgcg acgtcgccgc ggctctcggc
      361 tgccgcgaac gcctggcgat ggtcgtcaac cgcgccaaca gcggcgtctc ggtggccgac
      421 gtcgagcgga ccgtgggcat gcccgcattc gcccagatcc gctccggcgg gatgttcttc
      481 gtccgcgccg cgaacgaggg ccgcacggtg atcgagatgt tcccgcgcga gaagatcacc
      541 gccgacttcg acaccctcgc cgaccgcgtc ctcggcgtcc cggccaagcc ggagccggtc
      601 gtccggaccg gattccgcct cccgtcccgc gcgcgggcga tcgcccgcgc ctgacacccg
      661 gggcggcaac ccctcgaacg agaatcgcct cgccagggcg gtgcagcgca aggcggcgcc
      721 gagtacgtga gcgagcgcac tggaagtgcg tgagcgagcg cacggagggg ccaacgcggc
      781 gatgtaccgc catggcgagg cgccgagttg accgccgcta tctagtcttg tcggtccact
      841 gggcgccgcc catcgacccg cccggcagct tctcgtggcg ctcgcccgtt cgagcgtcga
      901 cctggtcgac accccgcagg taggcccgat tgatgaggat cacctgcgcg tccggcggac
      961 tgacggtcct gccgtcgatg gtggccgtcg cgtcgagcac gggcaggaac atgtcgttgg
     1021 atcgatcgag gagacggacc ggctcgtagc ccgggtagag ctggacggtg cccacgaccc
     1081 ggtacggcgg gatctccagg gccacctcgt aggtcacctt gtggacgcga tgcgccgatc
     1141 gctcctgctc cgacatggga ggcagcgagt cctcaccggc caggaccagc acgaggtcgt
     1201 atggatccac cgtcttgatg ccgggtgcgg gggccagcgg ttcgttcccg tcgatcggcg
     1261 cccattgcac gtcggccagc gcgatcggtt cgcgcttgtt gagcgcgtcg gacaggcggc
     1321 cgtcgacgag catgcgcccg accagccgcc actcctcggt catcccgtcg aaggcgatgc
     1381 cgcccgccgc gaccggcttc gacggggccg ccgtctccgc ggccgccgcc gttggctcct
     1441 tccgccgtct caggaaatcg aacggcacgt cattcctccg ccgcgcccgt gttgtcccgg
     1501 atgatatcca ccacggtggc gtcggcgagc gtggtcgtgt cgcccaggac ccgtccctcg
     1561 gcgatgtcgc ggagcaggcg gcgcatgatc ttgcccgatc gcgtcttcgg caggtccggc
     1621 acgaacatga ggaacttcgg ccgggcgatc gggccgatga cgtaggcaac gtgttcgcgg
     1681 agctggagcg cgagcgcttc cgacggctcc tggtcggcct tgaggatgac gaacgcgaag
     1741 atcgcctgcc cgctgatctc gtccttcttc ccgacgaccg ccgcctcggc gaccgagcga
     1801 tggtcgacca gcgccgattc gacctcggtc gtcgagatcc ggtgaccggc cacgttcatg
     1861 acgtcgtcga cccggcccag gagccagagg tagccgtccg cgtcgcgctt ggccccatcg
     1921 cccgcgaagt acatccccgg gaagcggctc cagtaggtct ccttgtaccg ggccgggtcg
     1981 ccgtagatgc cgcggagcat cgccggccac ggccgcttca ggacgagata gcctcccccg
     2041 cccctcggca cggagttgcc gtccgcgtcg accacgtcgg cgtcgatgcc cgggaacggg
     2101 aacgtcgccg agcccggctt ggtggtagtc acgccgggca gcggcgtgat caggatctgg
     2161 ccggtctcgg tctgccacca cgtgtcgacg accggcgccc ggtcgccgcc gatgtgctcg
     2221 cggtaccaca tccaggcctc ggggttgatc ggctcgccca ccgacccgag gacgcggagc
     2281 gacgacaggt cgtgccgccg ggggatctcc gggccctgct tcatgaaggc gc
//
LOCUS       DATDDI010000635         2328 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_388560, whole genome shotgun sequence.
ACCESSION   DATDDI010000635 DATDDI010000000
VERSION     DATDDI010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388560"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1498)
                     /locus_tag="VIU37_09085"
     CDS             complement(152..1498)
                     /locus_tag="VIU37_09085"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014151.1"
                     /translation="MTARLEVVGQSVERSDAVGHVTGRTRFTADRVLPGMLHLKMVRS
                     PLHHARVRGIDLSEAERVPGFVRALTAADVPHNRYTILSLIGVEPEEEFVLAEDRVRF
                     KGEAIAAILAETEEAAMEAVSKVRLDLDELPAVFDVEEALEPGAPIVTHWGNNTFMYE
                     GHPCRRVRLGDVDAAFARADHIVEAVYNSSPIEHAPLETTGCIAVPEAGRFTVYTNTQ
                     ALYFSLDNTSIILQVPGNRLHFIGGTVGGGFGGKVDVIVEPIATLAAMKTGRPVRFVY
                     TRSEEMQVSSTRSAWRIYLKDGVTADGRIIARKVTSYADSGAYSRQTPYALTKHAANA
                     AGPYAIPNVSIDAYCVYTNRQPTSAMRGFGVTMASFALEVQMDKIAETLGIDPWTIRF
                     INAYHDGDMKPHQKLAEDATLIETMQAAAALVGHELTAEQQAMTSAPRAGGEHGGR"
     gene            complement(1495..1989)
                     /locus_tag="VIU37_09090"
     CDS             complement(1495..1989)
                     /locus_tag="VIU37_09090"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY6014152.1"
                     /translation="MGSTVITFELGGREVEVLVRPMTTLQSVLRNQLGQTATKEGCRQ
                     GGCGSCTVLVDGEPMASCLLPVEDVAGRRVTTLESLTPAEGLHPVQQAFVDGHAFQCG
                     YCTPGMVMLSKALLDHDPAPSDEAIGLALSGNVCRCTGYRPILYAIRHVSGATAGRDA
                     EPVR"
     gene            complement(1992..>2328)
                     /locus_tag="VIU37_09095"
     CDS             complement(1992..>2328)
                     /locus_tag="VIU37_09095"
                     /inference="COORDINATES: protein motif:HMM:NF015415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014153.1"
                     /translation="AFLKYGRKHANTPAVVTVAARVTWDGLRVADARIALGAAGPHPI
                     RARDAERVLVGTDLGADAIAAASAAAARECEPFTDAIATEWYRRRMVGLFVGRALQQL
                     APGAAREDR"
BASE COUNT          321 a          820 c          828 g          359 t
ORIGIN      
        1 agcccctggc ccaggtccgt ggccgacaac gtgaccacga acgacccgct ggtcgtggca
       61 tggaccagcg cctgcgacgg gtcgccgccg aggttcatgc cggtcgggta gttgacggca
      121 gccatgcccg tgccgcgcag cttggccatg gtcaacggcc tccgtgctcg ccgccggcgc
      181 gtggcgccga cgtcatcgcc tgttgctcgg ccgtcagctc gtgccccacg agcgcggcgg
      241 cggcctgcat cgtctcgatc agggtcgcgt cctcggcaag cttctggtgc ggtttcatgt
      301 cgccgtcgtg gtaggcgttg atgaaccgga tcgtccacgg gtcgataccc agcgtctcgg
      361 cgatcttgtc catctggacc tcgagcgcga acgaggccat ggtcacgccg aagccgcgca
      421 tggcgctggt cggctgtcgg ttcgtgtaga cgcagtaggc gtcgatcgac acgttcggga
      481 tggcgtacgg cccggccgcg ttcgcggcgt gcttcgtcag cgcgtacggc gtctggcggc
      541 tgtatgcgcc ggaatcggcg tagctggtca ccttgcgggc gatgatgcgg ccgtcggcgg
      601 tcaccccgtc cttcaggtag atccgccagg cgctgcgggt ggacgagacc tgcatctcct
      661 cggagcgggt gtagacgaac cggaccgggc gacccgtctt catcgcggcc agcgtcgcga
      721 tgggctcgac gatgacgtcg accttgccgc cgaacccgcc gccgaccgtc ccgccgatga
      781 agtggagccg gttgccgggg acctgcagga tgatcgaagt gttgtccagg ctgaagtaga
      841 gcgcctgcgt gttcgtgtac accgtgaacc ggcccgcctc ggggaccgcg atgcagccgg
      901 tggtctcgag cggcgcgtgc tcgatcgggc tcgagttgta gacagcctcg acgatgtggt
      961 cggcccgggc gaacgccgcg tccacgtcgc ccagccgcac gcgccggcaa ggatggccct
     1021 cgtacatgaa cgtgttgttg ccccagtggg tcacgatcgg ggcacccggc tcgagggcct
     1081 cctcgacgtc gaagaccgcg ggcagctcgt cgaggtcgag gcggaccttc gagacggcct
     1141 ccatcgccgc ctcctcggtc tcggccagga tggcggcgat cgcttcgccc ttgaaccgca
     1201 cgcggtcctc ggccaggacg aactcctcct cgggttcgac gccgatcagc gacaggatcg
     1261 tgtagcggtt gtgcgggacg tcggccgcgg tcagcgcccg gacgaacccg ggcacccgtt
     1321 ccgcctcgga caggtcgatt ccgcggactc gcgcgtgatg gagcggactt cggaccatct
     1381 tgagatggag catgcccggc aagacgcgat ccgccgtgaa ccgcgtccgg ccggtgacgt
     1441 ggccgaccgc gtcgctgcgc tcgaccgact gcccgacgac ctcgagccgc gcggtcatcg
     1501 gactggctcc gcgtcgcggc cggcggtcgc cccggaaacg tggcggatcg cgtacaggat
     1561 cggccggtac ccggtgcacc ggcacacgtt gcccgacagc gccaggccga tggcctcgtc
     1621 gctcggcgcg ggatcgtggt cgagcagcgc cttcgacagc atgaccatcc ccggcgtgca
     1681 gtagccgcac tggaacgcat ggccgtcgac gaacgcctgc tggaccgggt gcagcccctc
     1741 ggccggggtg aggctctcga gcgtcgtgac gcgccggccc gcgacatcct cgacgggcag
     1801 caggcacgag gccatcggct cgccgtcgac gaggacggtg cacgatccgc agccgccctg
     1861 gcggcagccc tccttggtgg ccgtctggcc gagctggttg cgcagcaccg actggagcgt
     1921 cgtcatcggc cgcacgagga cctcgacctc gcgcccgccg agctcgaagg tgatgactgt
     1981 cgaccccatg gctagcgatc ctccctggcg gcacccggcg ccagctgctg cagtgcccgg
     2041 ccgacgaaca ggccgaccat ccggcgccgg taccactcgg tggcgatcgc gtcggtgaag
     2101 ggttcgcatt cgcgagcggc agccgcgctc gcagcggcga tcgcgtccgc acccagatcg
     2161 gtcccgacca ggacgcgctc ggcgtcgcgc gcccggatcg gatgcgggcc ggccgcgccg
     2221 agcgcgatgc gggcatcggc gacccggagg ccgtcccagg tcacgcgcgc ggccaccgtc
     2281 acgaccgccg gcgtgttggc gtgcttccgc ccgtacttga ggaacgcc
//
LOCUS       DATDDI010000636         1506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_533987, whole genome shotgun sequence.
ACCESSION   DATDDI010000636 DATDDI010000000
VERSION     DATDDI010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533987"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..831
                     /locus_tag="VIU37_09100"
     CDS             <1..831
                     /locus_tag="VIU37_09100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014154.1"
                     /translation="SNWLLGPFRLAESSSPEARPTCPTCGVRRSRHTGFGGDPISDEA
                     WAAEVADCRAQFDATERGKRIQLAMAKGPYSQEGRRELEELTGVDLSNVEPVSRAEAI
                     GWLEKDHTEAGEGLAASLTAGGTASPVGNADQPARGGTASGAAPSREYTDEELDAIVK
                     AVKEEPTWRCARCGKGEETDELPFAWEHLYAPGGDWTLCPDCVVGYIDWIAEPSRALE
                     QLRNRTLMLLESVNEQIHEARRRAREGAPGELLNQLVPEPDSPPSIWRRIIQRITGGS
                     "
     gene            1070..1309
                     /locus_tag="VIU37_09105"
     CDS             1070..1309
                     /locus_tag="VIU37_09105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014155.1"
                     /translation="MLALALSLAIAIAVAYTLADTDRDADARAHAHAAPDASTYTHTH
                     WYANAHTHSTVADRRADVRTDTYLGPVGHADAAAD"
     gene            1324..>1506
                     /locus_tag="VIU37_09110"
     CDS             1324..>1506
                     /locus_tag="VIU37_09110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014156.1"
                     /translation="MTEVRRVPSSIFRLTYVRETEPVAVTVQGRVIGHYVPGHELEYL
                     TVGQGDNTEVVAVVRRE"
BASE COUNT          238 a          582 c          498 g          188 t
ORIGIN      
        1 agcaactggc tcctggggcc gttccgtcta gccgagtcgt ccagccccga ggcccggccg
       61 acatgcccga catgcggcgt gcggcggagt cggcacacgg ggttcggcgg cgatccgatc
      121 agcgacgagg cgtgggccgc ggaggtcgcc gactgccgtg cccagttcga cgcgacggag
      181 cgcggcaagc ggatccagct cgcgatggcg aagggcccgt actcgcagga aggtcggcgc
      241 gagctcgagg agctgacggg cgtcgatcta tcgaacgtcg agcccgtctc ccgcgcggag
      301 gcgatcggct ggctcgagaa ggaccacaca gaggccgggg agggcctcgc cgcgtcgctc
      361 accgctggcg ggaccgcgag tcccgtcggt aacgccgatc aacccgctcg cggcggtacg
      421 gcgtctggcg cggcaccttc acgcgagtac accgacgagg agctcgacgc gatcgtgaag
      481 gcggtcaagg aggagcccac ctggcgctgc gcgcggtgcg gcaagggcga ggaaaccgac
      541 gagctgccgt tcgcctggga gcacctgtac gccccaggcg gcgactggac gctctgcccg
      601 gactgcgtgg tgggctacat cgactggatc gccgagccgt cgcgggccct cgagcagctc
      661 cgcaatcgga cgctgatgtt gctcgagtca gtcaacgagc agatccacga ggctcgccgg
      721 cgtgcccgcg agggcgcccc gggcgagctg ctcaaccagt tggtgcccga gccagactcc
      781 ccgccgtcga tctggcggcg catcatccag cgcatcaccg gaggttcgta gtgaagcgtc
      841 tcgcgctcgt ggtcggcctg ttcatggccg tcctgctctc gctgccggcc gccgccggcc
      901 agtccacccc gcccggccag gacggctcgt gccacggcgc gaaccaggcc acctgccggc
      961 ccgatccgca gccgagccac ggccacgact gcgaccacca gccgcccggc aatccgaacg
     1021 gcaacgacga ccactgcctg cccaccccga gtccgaggcc caccccgaca tgctcgccct
     1081 cgccctctcc ctcgccatcg ccatcgccgt cgcctacacc ctcgccgaca ccgaccgcga
     1141 cgccgacgcc cgtgcccacg cccacgccgc gcccgacgcc tcgacctaca cccacaccca
     1201 ctggtacgcc aacgcccaca cccactccac cgtcgccgac cgtcgagccg acgttcgcac
     1261 cgacacctac ctcggccccg tcggtcatgc cgacgctgcc gccgactgac acggactagg
     1321 gccatgaccg aagtccggcg ggttccgagc tcgatcttcc ggctcaccta cgtccgcgag
     1381 acggagccgg tggccgtgac cgtgcagggc cgcgtgatcg gccactacgt cccggggcac
     1441 gagctcgagt acctgacggt cggccagggc gacaacaccg aggtcgtcgc agtcgtcagg
     1501 cgcgag
//
LOCUS       DATDDI010000637         4083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_471558, whole genome shotgun sequence.
ACCESSION   DATDDI010000637 DATDDI010000000
VERSION     DATDDI010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4083
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471558"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4063)
                     /locus_tag="VIU37_09115"
     CDS             complement(<1..4063)
                     /locus_tag="VIU37_09115"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6014157.1"
                     /translation="MGAPTRTRRPPRAAPPADGRNGPGGRLPADPLDRFSPAVRDWFR
                     SSFEAPTQAQAEGWAAISAGAHTLIHAPTGSGKTLAAFLWCLDRLAREPSRPPVKGQL
                     AQVRVLYVSPLKALTYDVERNLQAPLTGIGLAAQRLGEAPPRISVASRTGDTPTEDRR
                     EIARHAPDILITTPESLYLMLTSGAREVLRGVEHVIIDEVHAIAGSKRGAHLALSLER
                     LEHLRAPDAKPPQRIGLSATQRPLDAIARFMAGVGPGRDVRIVDAGARKPLELQVVIP
                     VEDMAAMGEVLPPDQQPGGPATGGDLRTSIWPAIHPRILELIRSHRSTIVFTNSRRLS
                     ERLAQRLNELAGEELVRAHHGSIAREQRLQIEEELKAGRLPALVATSSLELGIDMGAV
                     DLVIQVESPTSVARGLQRVGRAGHQVGAPSKGVIFPKYRGDLLECAVVTRRMHEGAIE
                     TTVIPRNPLDVLAQQLVAMAVMDRWTVDELLATVTAAAPYETLTRDVLEGVLGMLAGA
                     YPSDEFAELKPRVVWDRLTDVVEGRRDARVVSVTSGGTIPDRGLYGVFMVGEAGTLGR
                     RVGELDEEMVYELRAGMHGDVVVLGASSWRVEEISHDRVTVSPAPGIPGKLPFWHGDA
                     VGRPVELGRALGAFVAELEGDLARGEKGRAAATTRLRERHDLDELAADNLLAYLDDER
                     ESTGTLPTDRRIVVERFRDELGDWRLCLLTPFGGRVHAPWALAIEARIGERLGMEVQT
                     IWSDDGIAIRLPEGDAPLDGIEDLLFPDADDLEDLVVGRLASSALFASRFRENAARAL
                     LLPRRRPGVRTPLWQQRQRAADLLAVASRYGSFPILVETYRECLSDVFDIPALREILA
                     GVARREIVIHSVETVRASPFASSLLFDYVAAYMYDGDTPLAERRAGALTLDRDLLREL
                     LGQEELRELLDPDALADLELSLQALADERQARTLDGVHDLLRRLGDLDADEVAARTEG
                     GAAAAGPWLAELAAARRAVRTRIAGDERWIAIEDVARYRDGVGIAPPVGVPGAFLGAV
                     TGALDGLLARWARTHGPFLTPEPARRWGLPQGVVDDGLERLLAAGSLLRGEFRPGGAE
                     REWCDPEVLRLLRRRSLARLRREVEPVDPAALARFLPEWHGIAAVGASPAPYRGSAAL
                     ERLAEVVDQLAGLPIPASVLERDVLPARIPGYQPRLLDELGSLGEVAWVGRGSLGRDD
                     GRIVLVRPGREALRPVGSPDGTTAPDEPRHRAIREHLARRGASFYRELYAAAKGSSDR
                     EVLDALWDLVWAGEVTNDTFAPLRALRWKRTGSGARRGFRPGRLTSLGPPEAAGRWSL
                     VAGEPDAAGLPPTATERLHALSLALLERHGIVTR"
BASE COUNT          537 a         1462 c         1564 g          520 t
ORIGIN      
        1 cgcgggtgac gatgccgtgg cgctcgagga gcgcaaggct gagggcatgg agccgctcgg
       61 tcgcggtggg tgggagcccg gcggcgtccg gttcgccggc cacgagcgac cagcggccgg
      121 ccgcttcggg cggacccagc gaggtcagcc ggccgggccg gaagcctcgc cgtgcgccgc
      181 tgccggttcg cttccagcgc agcgctcgga gcggtgcgaa cgtgtcgttg gtgacctcgc
      241 ccgcccagac caggtcccac agcgcatcca gcacctcgcg atccgagctg cccttcgccg
      301 cggcatacag ctcgcggtag aacgaggcgc cgcggcgggc cagatgctcg cggatggcgc
      361 ggtgtcgtgg ctcgtccggg gctgtggtgc catccggcga gccgaccggt cggagcgcct
      421 cgcggcccgg gcgaaccagg acgatccgcc cgtcgtcgcg accaaggctc ccccgcccca
      481 cccaggccac ctcgccgagt gacccgagct cgtcgagcag ccggggctgg tagccgggga
      541 tccgggccgg gagcacatcg cgctcgagga cggaggccgg gatcgggagc ccggccagct
      601 gatccacgac ctcggccagg cgttcgaggg cggccgatcc ccgatacggc gcgggtgaag
      661 ccccgaccgc cgcgatcccg tgccactccg gcaggaaccg ggcgagcgcc gcgggatcga
      721 ccggctcgac ctcacggcgg agcctcgcca gcgagcggcg gcgcaggagg cggaggacct
      781 ccgggtcgca ccactcgcgt tcggcgccgc cgggacggaa ctcgccgcgg agcagtgagc
      841 cggcggccag caggcgctcg agtccgtcgt cgacgacgcc ctggggcagg ccccagcggc
      901 gggcaggctc cggcgtgagg aacgggccgt gcgtgcgcgc ccagcgggcg agcagaccgt
      961 cgagcgcgcc ggtcacggcc ccgaggaacg ccccggggac accgaccggt ggcgcgatcc
     1021 ccacgccgtc gcgatagcgg gcgacatcct cgatcgcgat ccaccgctcg tcgccggcaa
     1081 tccgcgtccg gaccgcccgc cgcgcggcgg cgagctcggc cagccacggg ccggcggccg
     1141 ccgcgccgcc ttcggtcctc gccgcgacct cgtcggcatc gaggtcgccg agccttcgca
     1201 gcaggtcgtg gacgccgtcg agcgtcctcg cttgccgttc gtcggccagc gcctgcaggc
     1261 tcagctcgag gtcggcgagc gcgtccggat cgagcagctc gcgcagctcc tcctggccga
     1321 gcagctcgcg gaggaggtcg cgatccaagg tgagcgctcc cgcgcgacgt tcggcgagcg
     1381 gcgtgtcgcc gtcgtacatg taggccgcga catagtcgaa cagcaggctg ctcgcgaacg
     1441 gcgaggcgcg gacggtctcg accgagtgga tgacgatctc gcgccgggcg acgccggcca
     1501 ggatctcgcg cagcgcgggg atgtcgaaga cgtccgagag gcactcgcgg taggtctcga
     1561 ccaggatcgg gaagctgccg tagcgcgacg cgaccgcgag caggtcggcg gcccgctggc
     1621 gctgctgcca gagcggggtc ctgaccccgg ggcggcggcg gggcagcagg agcgcccgcg
     1681 cggcgttctc gcggaaccgg ctggcgaaca gggccgagct cgcgagccgg ccgacgacga
     1741 ggtcctcgag gtcgtccgcg tcggggaaca ggaggtcctc gatgccgtcg agcggcgcat
     1801 ctccctcggg cagccggatc gcgatcccgt catccgacca gatcgtctgg acctccatgc
     1861 cgaggcgctc gccgatccgg gcctcgatgg ccagcgccca cggcgcgtgg acgcgcccgc
     1921 cgaacggcgt caggaggcag agccgccagt cccccagctc gtcgcggaaa cgctcgacca
     1981 cgatccgccg gtcggtgggg agcgtgcccg tggattcgcg ttcgtcatcg aggtaggcca
     2041 gcaggttgtc ggccgccagc tcgtcgaggt cgtggcgctc ccggagccgg gtcgtcgcgg
     2101 cggcgcgacc tttctcgccg cgggcgaggt cgccttcgag ctccgcgacg aaggccccga
     2161 gcgcccgccc gagctccacg ggccgcccga cggcgtcacc gtgccagaac ggcagcttgc
     2221 ccgggatccc gggcgccggg ctgacggtga cccggtcgtg actgatctct tcgactcgcc
     2281 agctgctcgc cccgaggacc acgacgtcgc cgtgcatccc ggcgcggagc tcgtagacca
     2341 tctcctcgtc gagctcgccc acccggcggc cgagcgtgcc ggcctcgccg accatgaaca
     2401 cgccgtacag gccgcggtcc gggatggtcc cgccgctcgt cacggagacg acgcgggcgt
     2461 cgcgtcggcc ctcgacgacg tcggtgagcc ggtcccagac gacccgtggc ttgagctccg
     2521 cgaactcatc ggagggatag gcgccggcga gcattccgag cacgccctcg agaacgtccc
     2581 gggtcagggt ctcgtacggg gcggcggcgg tcaccgtggc caacaactcg tcgacggtcc
     2641 acctgtccat caccgccatg gcgaccagct gctgggcgag gacgtcgagc gggttgcgcg
     2701 gaatcacggt cgtctcgatc gcaccttcgt gcatccggcg ggtgacgacc gcgcactcga
     2761 gcaggtcgcc gcggtacttg gggaagatga cgcccttgct cggcgccccg acctggtggc
     2821 cggcgcggcc gacacgctgg aggccgcggg cgacgctcgt cgggctctcg acctggatga
     2881 cgaggtcgac cgcgcccatg tcgatcccga gctcgaggct ggacgtggcg accagcgcgg
     2941 ggagccggcc ggccttgagc tcctcctcga tctggagccg ctgctcgcgg gcgatgctcc
     3001 cgtgatgggc ccggacgagc tcctcgccgg cgagctcgtt gagccgctgg gcgagccgct
     3061 cgctcaggcg gcgggagttg gtgaagacga tcgtgctgcg gtggctccgg atcagctcga
     3121 ggatgcgggg atggatcgcc ggccagatgc tggtgcggag atcgccgccg gtcgccggac
     3181 cgcctggctg ctggtcgggc ggcaggacct cgcccatcgc cgccatgtcc tcgaccggga
     3241 tcacgacctg gagctcgagc ggtttgcgcg cgcccgcgtc gacgatgcgg acatcgcggc
     3301 ccgggccgac cccggccatg aaccgggcga tcgcgtcgag cgggcgctgc gtggccgaca
     3361 ggccgatccg ctggggtggc ttcgcgtccg gagcccggag gtgctccagc cgctccaggc
     3421 tcaacgcgag gtgcgcgccc cgcttggagc cggcgatggc atggacttcg tcgatgatca
     3481 cgtgctcgac gccgcggagc acctcgcgcg cgccgctcgt gagcatgagg tagagcgact
     3541 cgggggtcgt gatcaggatg tccggcgcgt gccgggcgat ctcgcgccga tcctcggtcg
     3601 gtgtgtcgcc cgtccgggac gcgaccgaga tccgcggcgg cgcctcgccg agccgttgcg
     3661 ccgccaggcc gatcccggtg agcggcgcct ggagattgcg ttcgacgtcg taggtcaggg
     3721 ccttgagcgg cgagacgtac aggacgcgga cctgggcgag ctgccccttg accggcggcc
     3781 ggctcggctc gcgggccagc cggtccaggc accacaggaa cgcggcgagg gtcttgccgc
     3841 tcccggtcgg ggcgtggatc agggtgtggg cgccggcaga gatagccgcc cagccttcgg
     3901 cctgggcctg cgtgggggcc tcgaagctcg agcgaaacca gtcgcggacg gcgggcgaga
     3961 agcgatcgag ggggtccgca ggcaggcgcc cgccgggccc gttccggcca tcggcgggcg
     4021 gggccgcacg tggcgggcgt cgggttcggg tcggagctcc cacgggacgg tcagtatagg
     4081 cgg
//
LOCUS       DATDDI010000638         1669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_159545, whole genome shotgun sequence.
ACCESSION   DATDDI010000638 DATDDI010000000
VERSION     DATDDI010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159545"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VIU37_09120"
     CDS             complement(<1..279)
                     /locus_tag="VIU37_09120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014158.1"
                     /translation="MSAGRPIHVDDETRLADEMARELEGVAERSHVTPAPGFADRVMA
                     SIASEPLPQPARAFGAAVTARRLGAALASIGDAWRVAVGGRAPLAVRAQ"
     gene            complement(276..803)
                     /locus_tag="VIU37_09125"
     CDS             complement(276..803)
                     /locus_tag="VIU37_09125"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6014159.1"
                     /translation="MDAVLAGDRDAFRFLVERESPAVLRACHRVLGDLHESEDAAQEA
                     FVTAFRSLAAWRGEGPFGAWLTRIAVRIALRRAQRRRDVTWIDPLDPAAGVDLPGGTD
                     PAITSLRAERAAGLRAAVGRLDEPYREVVALRFFGELSLEEIADQTGRPLGTVKTHLR
                     RGLLRLRAVVDGGQA"
     gene            complement(962..1402)
                     /locus_tag="VIU37_09130"
     CDS             complement(962..1402)
                     /locus_tag="VIU37_09130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014160.1"
                     /translation="MKTQHRLIRIVGTAGVGVFLVASVAFGANAIGQAPGRSIDSTLT
                     TSDETAEPSETAEPEETAEPTPTPTPTGTPTPTPTPTATATATADDQNEQGDDHEDAT
                     ETPEPTAAQATSTAEPTESPDDHGGDSGHDGGGDDSGHDGGGHD"
BASE COUNT          192 a          615 c          609 g          253 t
ORIGIN      
        1 ctgggcccgg accgccagcg gcgcccggcc accgacggcg acccgccagg cgtccccgat
       61 cgatgccagc gcggcgccga ggcgcctcgc ggtcacggcc gccccgaacg cccgagccgg
      121 ctggggcagg ggttcgctgg cgatcgaggc catgacgcga tcggcgaacc cgggcgcggg
      181 cgtcacgtgg ctgcgctcgg ccacgccctc cagctcgcgg gccatctcgt cggccaggcg
      241 cgtttcgtcg tccacgtgga tcggccgtcc ggcgctcacg cctggcctcc gtccaccacc
      301 gcccgcagcc ggagcaggcc gcggcgaagg tgggtcttga cggtgcccag tggccgcccg
      361 gtctggtcgg cgatctcctc gaggctcagt tcgccgaaga atcgcagcgc cacgacctcc
      421 cggtatggct cgtcgagccg gccgacggcc gcgcggagcc cggcggcacg ctcggcccgg
      481 agcgacgtga tcgccggatc cgttccgccg ggcaggtcca cgcccgctgc cggatccagg
      541 ggatcgatcc aggtgacgtc gcgccggcgc tgcgcgcgcc gaagcgcgat ccggacggcg
      601 atccgggtca gccaggcccc gaacggcccc tcgccgcgcc aggcggcgag gctccgaaac
      661 gcggtcacga aggcctcctg ggcagcgtcc tcggattcgt ggaggtcgcc gagcacgcga
      721 tggcaggcgc gcaggacggc cggactctcg cgctcgacca ggaaccggaa cgcgtcgcga
      781 tcaccggcga ggacggcatc cacagcggcg cgttcatcgg tgacctcgga gcggctggct
      841 ggagcgggga caggtgacgg tggcgtgacg tgacccccga cgatcgtgct gatggacgga
      901 ccgaacgtcc gtccatcatc caccgtaccc gtctgcgggt gagcctgtca ggccggtccg
      961 ctcagtcgtg tccgccaccg tcgtgtccgg agtcgtctcc gccgccgtcg tgacccgagt
     1021 cgccgccgtg atcgtcgggg ctctcggtcg gctcggccgt cgatgtagcc tgcgccgcgg
     1081 tgggctcggg cgtctcggtg gcgtcctcgt ggtcgtcgcc ctgctcgttc tggtcgtcgg
     1141 cggtcgcggt tgccgtcgcg gtcggcgtgg gcgtgggcgt cggggtgccg gtcggcgtcg
     1201 gtgtcggtgt cggctcggcg gtctcctcgg gctccgcggt ctcgcttggc tcggccgtct
     1261 cgtcgctcgt cgtcagcgtc gagtcgatgg agcgaccggg cgcctggccg atcgcgttcg
     1321 cgccgaacgc gacgctggcg acgaggaaca cgccgacgcc ggcggtaccc acgatgcgga
     1381 tgagtcggtg ctgcgtcttc attgaaccgg tcctcccgaa cccttcgtcc ggcgtgtgcc
     1441 ggctgtctgt actcctgagc cttctggcct ggcaaaggtt tcaccagcgc gcgctcggtc
     1501 ggcgcggcga accggccgcc gtgcccccat ccgcgatccg caagacggct gaaacctttg
     1561 cgccgccggg tgcctcagta ccggtagacg ccagcatcgc ccgaggtatc cctgtggccg
     1621 ttgacattcg ccgcccgccc gcagcgcccc cgaactcggg tgggccatt
//
LOCUS       DATDDI010000639         3892 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_221822, whole genome shotgun sequence.
ACCESSION   DATDDI010000639 DATDDI010000000
VERSION     DATDDI010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221822"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..969)
                     /locus_tag="VIU37_09135"
     CDS             complement(<1..969)
                     /locus_tag="VIU37_09135"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY6014161.1"
                     /translation="MASRAAADEPVATDARPLVLVVEDDVANRTLLERLLEREGYRTQ
                     AAGDGEAALLAAGEHGPDLILLDIGLPRLDGYEVTRRLRSHIRTLTVPIILLTGRTGL
                     EDVVEGLDAGADDFLSKPFRQPELLARIRSALRLRQALARMDAAHAAVAALANAVEAK
                     DPSTEHHCQRLANLAARLGTQAGLDATDLEAVAYGALLHDVGKIGVPESILTKQGPLN
                     ATEWEVMRSHPEIGARICEPLAAAGAFGPIVRHHHERWDGHGYPDGLKGEAIPLGARI
                     VALVDAFDAMTHDRPYRRALSVDHALRELWSESGTQFDRALVPLFAL"
     gene            complement(971..1756)
                     /locus_tag="VIU37_09140"
     CDS             complement(971..1756)
                     /locus_tag="VIU37_09140"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014162.1"
                     /translation="MAQRRTPPTEPPEPRPETIRVVLVEPLALVGAGMREVIDGEPDM
                     EVVAEVRTAGDALAAVEQSSPDIVLMDVGLQEPTASAATRRLTQDSGSAVVVVGGDDD
                     DASIMDAMEVGATAHVAAAAQPAELVAVIRRVADGEDPLHDQVVARPDLVGKVVEAFR
                     EGFRHQDSAADIPLTPRELEILREVASGRKNRQIADRLVLTEQTVKNHLSRILHKLGV
                     PNRTHAVTFAVRQGWLTLEEVDPDSAARTLAPDLVGSAVTGEA"
     gene            complement(1859..2617)
                     /locus_tag="VIU37_09145"
     CDS             complement(1859..2617)
                     /locus_tag="VIU37_09145"
                     /inference="COORDINATES: protein motif:HMM:NF013782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP thioesterase domain-containing protein"
                     /protein_id="HEY6014163.1"
                     /translation="MSERAPDTCSAPYRVRFDEAAPDGWLRTSVVLRYAQDLAWHHSA
                     SRGFGRAWYGERGLSWLVRAAEIAVLAPVEVGAEIEGTTQVVGWRRVWARRRTDFRDG
                     AGNLVAWTLIDWVLLNRAGSPARIPGEFDAVFGAPAVPTGLARVTLVTPADGTRHHGF
                     SVRPQELDPMDHVNNAVYADWLDEAVIAAGDPAATRAIPRLVRLEYAAPAAAGSDVSA
                     ELWPELGGWSMRLRDSAGRDLLRARLEPGGGAPR"
     gene            complement(2614..3321)
                     /locus_tag="VIU37_09150"
     CDS             complement(2614..3321)
                     /locus_tag="VIU37_09150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014164.1"
                     /translation="MRFQDAARDARAVVYAGIQADPLVARAGDLLADASHEQRVLARA
                     VMNGETTDPDAWRVMFPSLFGRAAATADGRAGHAAAATLERSEAILEASLAVADRGEQ
                     VRSQVRGALVEAVTARLLSRRVGNEAVRRERRILFDGVPAEIHPYDVTVERPGAAEAY
                     DCKWGARGINADVLYQLDDARSHAADEEQRLAVALVMFDAARSCEVRLERQTAPHGAT
                     RLFTLETLDELAAGTAG"
     gene            complement(3318..3620)
                     /locus_tag="VIU37_09155"
     CDS             complement(3318..3620)
                     /locus_tag="VIU37_09155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014165.1"
                     /translation="MPSETISAAIDRALDAHAGLAELGETIDDEWSYVNDLGDAWRTR
                     LEAVAASRADEPIADEVSAAIDRAIEEIGRITDPHRAIDWLSTFPQVVLIALGERP"
     gene            complement(3656..>3892)
                     /locus_tag="VIU37_09160"
     CDS             complement(3656..>3892)
                     /locus_tag="VIU37_09160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014166.1"
                     /translation="EELPALYRALLDRVAQIEAEGRRAAAYTLRSEATRIYSRSWDDR
                     ARRALQDLLARTADTRGEHRELAHGATQRSVTAA"
BASE COUNT          493 a         1408 c         1460 g          531 t
ORIGIN      
        1 gagggcaaag agcggcacga gcgcgcggtc gaactgggtg cccgattcgc tccatagctc
       61 gcgcagcgcg tggtcgaccg acagcgcccg ccggtacggc cggtcgtggg tcatcgcgtc
      121 gaaggcgtcc accagggcca cgatccgcgc tccgagcggg atcgcctcgc ccttcaggcc
      181 gtccgggtag ccatgcccgt cccagcgctc gtggtgatgc cggacgatgg gcccgaaagc
      241 accggccgcg gccagcggct cgcagatccg cgcgccgatc tcggggtggc tgcgcatgac
      301 ctcccactcg gtcgcgttga gcgggccttg cttggtcagg atcgattcgg gcaccccgat
      361 cttgccgacg tcgtggagca gcgcgccgta ggcgaccgcc tcgaggtcgg tcgcgtcgag
      421 gccggcctgg gtcccgagcc gggcggcgag gttggcgagc cgctggcagt gatgctcggt
      481 gctcgggtcc ttggcctcga cggcattggc cagcgcggcc accgccgcgt gcgcggcgtc
      541 catgcgggcg agcgcctggc gcaggcggag ggcgctcctg atgcgggcga gcagctcggg
      601 ctgccggaag ggcttggaca ggaagtcgtc ggcccctgcg tcgagccctt ctaccacgtc
      661 ctccagcccg gtccggccgg tcagcaggat gatcgggacg gtcagcgtcc ggatgtgcga
      721 acggagacgg cgggtcacct cgtagccgtc gagacgcggc agcccgatgt ccagcaggat
      781 gaggtccggg ccgtgctccc cggccgcgag cagggccgcc tcgccatcgc cggccgcctg
      841 cgtgcggtac ccctcgcgct cgagcagccg ttcgagcagg gtgcggttgg ccacgtcgtc
      901 ctcgaccacc agcacgagcg ggcgtgcgtc ggtggcgacc ggctcgtccg ccgcggcgcg
      961 gctggccatc tcaggcctcg ccggtcacgg cgctgccgac gaggtccggc gcgagggtcc
     1021 tcgccgcgga atccggatcg acctcctcga gggtcagcca gccctggcgg acggcgaagg
     1081 tgacggcgtg cgtccggttg gggacgccca gcttgtggag gatccgggac aggtggttct
     1141 tgacggtctg ctcggtgagc acgagccggt cggcgatctg tcggttcttg cgaccggacg
     1201 ccacctcgcg gaggatctcg agctcccgcg gggtcagcgg gatgtccgcc gccgagtcct
     1261 ggtgccggaa gccttcgcgg aacgcctcca cgaccttccc gacgaggtcg gggcgtgcga
     1321 cgacctggtc gtgcagcggg tcctcgccgt cggcgacgcg gcggatgacg gccacgagct
     1381 cggccggctg cgcggcggcg gcgacgtgcg cggtcgcgcc gacctccatc gcatccatga
     1441 tgctcgcatc gtcgtcatca ccgccgacga ccacgaccgc cgacccggaa tcctgggtca
     1501 gccggcgggt ggccgcgctt gccgtcggct cctgcaggcc gacgtccatc aggacgatgt
     1561 ccggggagct ctgttcgacg gccgcgaggg cgtcgccggc cgtgcggacc tcggcgacga
     1621 cctccatgtc cggctcgccg tcgatgacct cgcgcatgcc ggcaccgacc agcgccaggg
     1681 gctcgacgag gacgacgcgg atggtctcgg gcctcggctc gggtggctcc gtcgggggcg
     1741 tgcggcgttg cgccatcgag cagttcctcc gctgggacgt ggcgttggag gccgagcgta
     1801 ccgtcgaacc cgatcgagcg catgacccga aaggaccgat cctggcccgg tcctttggtc
     1861 agcgcggcgc tccgcccccc ggttcgagcc tggcccgcag caggtcgcgg cccgcactgt
     1921 cacggagccg catcgaccag ccgccgagct ccggccagag ctcggccgag acgtccgaac
     1981 cggcggcggc gggcgccgcg tactcgagtc ggacgagccg cggaatggcg cgcgtggcgg
     2041 ccgggtcgcc ggccgcgatg acggcctcgt ccagccagtc ggcgtagacc gcgttgttga
     2101 cgtggtccat gggatccagc tcctgcggac gaacgctgaa cccgtggtgg cgggtcccgt
     2161 ccgcgggcgt gacgagggtc acccgggcca ggccggtcgg gacggcaggt gcgccgaaga
     2221 ccgcgtcgaa ctcgccgggg atgcgcgcgg gcgacccggc gcggttcagc aggacccagt
     2281 cgatcagggt ccaggccacc aggttccccg cgccgtcgcg gaagtccgtc cgccggcgcg
     2341 cccagacccg gcgccagccg acgacctggg tcgtgccctc gatctccgcg ccgacctcga
     2401 ccggagcgag gacggcgatc tcggcagccc gcacgagcca ggagaggccc cgctcgccat
     2461 accaggcgcg gccgaagccg cgcgacgcgg agtgatgcca ggcgaggtcc tgcgcgtatc
     2521 gcaggaccac cgacgtgcgc agccagccgt cgggcgccgc ctcgtcgaac cgcacgcggt
     2581 acggcgcgct gcaggtgtcc ggcgcgcgct cgctcatccg gcggtcccgg cggcaagctc
     2641 gtcgagcgtc tcgagcgtga acagccgggt cgcgccgtgc ggcgcggtct ggcgctcgag
     2701 ccggacctcg caggaacggg ccgcgtcgaa catgaccagc gcgacggcga gccgctgttc
     2761 ctcgtcggcg gcatgcgacc tcgcgtcgtc gagctggtac aggacgtccg cgttgatgcc
     2821 ccgcgcgccc cacttgcagt cgtacgcctc ggcggcgccg ggccgctcca cggtgacgtc
     2881 gtacggatgg atctcggcgg ggacgccgtc gaacaggatc cgtcgctcgc ggcggacggc
     2941 ctcgttgccg acgcgacgcg acaacagccg ggccgtcacc gcctccacga gggccccgcg
     3001 gacctggctt cgaacctgct caccccggtc ggcgacggcg agcgacgcct cgaggatcgc
     3061 ctccgaacgc tcgagcgtgg ccgcggcggc gtggccggcg cggccgtccg ccgtggctgc
     3121 cgcccggccg aacaggctcg ggaacatgac ccgccaggca tccggatcgg tcgtctcccc
     3181 gttcatcacc gcccgggcga ggacgcgctg ctcgtggctg gcatcggcca gcaggtcccc
     3241 ggcgcgcgcc acgagcggat ctgcctggat ccccgcgtac acgaccgcgc gggcgtcccg
     3301 ggcggcgtcc tggaacctca tggccgctcc cccagcgcga tcagcacgac ctgggggaac
     3361 gtggacagcc aatcgatcgc gcggtgcggg tcggtaatcc gaccgatctc ctcgatcgcg
     3421 cgatcgatgg ctgccgaaac ctcgtcggcg atcggctcgt cggcgcgcga ggcggcgacg
     3481 gcttcgaggc gggtccgcca ggcgtcgccg aggtcgttga cgtaggacca ctcgtcgtcg
     3541 atggtctcgc cgagctcggc cagcccggcg tgcgcgtcaa gggcgcggtc gatggcggcg
     3601 ctgatggtct cgctgggcac cgcgctagcc tacgcgtccg cgcgggcgat ggtcgtcagg
     3661 ccgcggtcac gctccgctgg gtggccccgt gggccagctc gcggtgctcg ccccgcgtgt
     3721 cggcggtgcg cgcgaggaga tcctgcaggg cacgccgggc gcggtcgtcc caggacctcg
     3781 aatagatgcg ggtggcctcg gatcggaggg tgtaggccgc ggcgcgccgg ccctcggcct
     3841 cgatctgggc gacccgatcc agcagcgccc gatacagcgc cggaagctct tc
//
LOCUS       DATDDI010000640         5097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_180443, whole genome shotgun sequence.
ACCESSION   DATDDI010000640 DATDDI010000000
VERSION     DATDDI010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5097
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180443"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1389
                     /locus_tag="VIU37_09165"
     CDS             <1..1389
                     /locus_tag="VIU37_09165"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY6014167.1"
                     /translation="DPGSATERYTVPSPEVAGPVDAIAGTPPATSEAAAPVDRYTPAS
                     EPRPEWTRDPAAETAATPERWYEPAPITEPVVPAARPRNRGSFGPVVGAALLSAVLAS
                     GGTVLALGATGALDRPVTTVPASTTGQGTNVGAPQPVAIDESSATINVAAKVNPAVVR
                     ITVTGASGAGDLGVIPATGVGSGVIYNSNGWILTNHHVVEGGTKFDVQLYDGRVFSGS
                     VYGIDTLTDLAIVKVDATGLPTASIGESDALKVGQLVIAIGSPLGTYSNSVTSGIVSA
                     KGRQITTDGNQSLTNLIQTDAAINPGNSGGPLLDADGNIVGINTAIASNSNGIGFAIP
                     IDIARPIMDQAVAGQKLTRPYLGIRFVSITRQLADDEKLPVQEGALVGGRDANGNPTT
                     GVEPGTPAAAAGIKDGDIIVSVNGKAIDEGHPLDATLAQFSPGDSVSVEVLRDGKHVT
                     LQVTLGTRPSGL"
     gene            complement(1442..1915)
                     /locus_tag="VIU37_09170"
     CDS             complement(1442..1915)
                     /locus_tag="VIU37_09170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014168.1"
                     /translation="MPMWRCPHCATPQAETARCWVCHRSSTACGSCRHFRRSVAAQLG
                     YCGLDRQRRPLTGEEIRECWESLDAQGSPATPVRPTVGPAAGWALEPGEDRTPVRLRD
                     FVEVRIEPARSAGLTHASPAAGDDPAGPVAESPRGPAVLSSPAEPRWSLWGDAEA"
     gene            complement(1973..3187)
                     /locus_tag="VIU37_09175"
     CDS             complement(1973..3187)
                     /locus_tag="VIU37_09175"
                     /inference="COORDINATES: protein motif:HMM:NF020700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014169.1"
                     /translation="MTTRRDPRQTHVRPRPPSSGRPAPVRTRPRAPSSTRLSVHRPIQ
                     RNRGLPLVGKLGLVLAIALLGVAVLYVGAGGLGKVFGGISSALGGFVTSVTSTPTPAP
                     SLAAVADAPTLQQPTEPYTQEPTVDLVVTVPPGVVGDPNQRIRVYLALKDQAPAPIQE
                     APLAATAQTIIPVELTKGINDFSVTIVGPGGESQPSAVVRYVLDQAPAKITITSPKEG
                     AVVNGDTVQIVGKTQARSTMIAHNAANGASITGTAATDGTFSLTLALGTGINEITITG
                     TDPAGNAKELVLTVRRGNGKLTATLSASAYRISVSKLPEDLTLRVTVSDPDGKALVGA
                     AVTFTLSIPGIPTVTGDQVTDADGRATFTTSIPAGADPGQGLATVLVSSDQFGSTQDQ
                     SVITVQPAPSPS"
     gene            3394..3753
                     /locus_tag="VIU37_09180"
     CDS             3394..3753
                     /locus_tag="VIU37_09180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014170.1"
                     /translation="MTPSPLASRPVPAPPEAPTNGAGARGAGPRPVATRQLPVGFGLP
                     NLRRNVCPHFYMTGARGAIPIQAPHLLKALIRQESTTSRCQLRGGVHMEQGYVNDVCL
                     TPRFNQCIFYEEELSRE"
     gene            3764..>5097
                     /locus_tag="VIU37_09185"
     CDS             3764..>5097
                     /locus_tag="VIU37_09185"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEY6014171.1"
                     /translation="MTNGRAGLDYWSAVRALEERGRFGVRLGLGRTRALLAAIGHPER
                     EIRGALIAGTNGKGSVLALAESALRAAGHHVGATPKPHLVSYRERIQVDGHPIDPDDF
                     SRLTARVLGVSGAVARRYGEPTEFELLTAVVFARFAEVRPDVSLVEVGLGGRLDATHA
                     WDGGVAAVTNVALDHTDRLGSTIVAIAREKAAIIERGDLAVTGADGDGLAVVRRRARR
                     LGVPLTEVGPAPLLGWDRDGIEVDLAGLGRTRVSLRGRHQAANVAIADALLDALDTAG
                     IAGTPAEARRTGYATAVWPGRLELVRADGRDVLLDGAHNPAGAAALATALDDLRPFLA
                     DGPLTLVTASMADKDVDGVIAALARTTALGDATIVCTSVDLARAMDAATLGARWRRHR
                     PTATILVEPDPVAAVDRAIARREAGNGPIVVAGSLYLVGAARGHLVDDPDTR"
BASE COUNT          703 a         1839 c         1860 g          695 t
ORIGIN      
        1 gatcccggat ccgccaccga gcgctacacc gtcccgtcgc ccgaggtggc gggccccgtc
       61 gatgccatcg cgggcacgcc gcccgccacg tccgaggccg cggccccggt cgatcgctac
      121 acgccggcgt ccgagccacg acccgagtgg acccgcgacc cggccgccga gaccgcggcc
      181 accccggagc gctggtacga gccggccccg atcaccgagc cggtcgtgcc ggcggcgcgg
      241 ccgaggaatc gcgggtcgtt cggcccggtg gtcggcgcgg ccctcctgtc cgcggtgctc
      301 gcctccggtg gcacggtcct ggccctgggc gcgaccggcg ccctcgaccg gccggtgacc
      361 accgtcccgg ccagcacgac ggggcagggc acgaacgtcg gtgcgccgca gccggtcgcg
      421 atcgacgaat cgtcggcgac catcaacgtg gccgcgaagg tcaatccggc cgtcgtccgg
      481 atcacggtca ccggcgcctc cggggccggc gatctcggcg tcatcccggc gaccggagtc
      541 ggctcgggcg tgatctacaa cagcaacggc tggatcctga ccaaccacca cgtcgtggag
      601 ggtggcacca agttcgacgt ccagctgtac gacggccggg tgttcagtgg ctccgtctac
      661 gggatcgaca ccctgaccga cctggcgatc gtgaaggtcg acgccacggg cctgccgacg
      721 gcctcgatcg gcgagtcgga tgcgctcaag gtcggccagc tggtcatcgc catcggcagc
      781 ccgctgggca cctactccaa ttcggtcacg agcgggatcg tgtcggccaa gggccgccag
      841 atcacgaccg acggcaacca gtcgctgacc aacctgatcc agacggacgc ggcgatcaac
      901 ccgggcaact ccggtggccc gctgctcgac gccgacggca acatcgtcgg catcaacacc
      961 gcgatcgcca gcaacagcaa cggcatcggc ttcgcgatcc cgatcgacat cgcccggccg
     1021 atcatggacc aggccgtcgc cggccagaag ctgacccgcc cgtatctcgg gatccgcttc
     1081 gtcagcatca cccgccagct ggccgacgac gagaagctgc ccgtccagga gggggcgctg
     1141 gtcggcggtc gcgacgccaa cgggaacccg accacgggcg tcgagcctgg cacgccggcc
     1201 gccgcggccg gtatcaagga cggcgacatc atcgtgagcg tgaacggcaa ggcgatcgat
     1261 gagggtcacc cgctcgacgc gacgctcgcc cagttctcgc cgggcgactc ggtgagcgtc
     1321 gaggtcctgc gggacggcaa gcacgtcacc ctccaggtca cgctcgggac acgcccctcg
     1381 ggcctgtaag gaaggagcgc ccgggtcctc cgaggcccgg gtaaacccaa ccggagacgc
     1441 ctcaggcttc ggcgtctccc cagaggctcc agcgcggctc ggccggtgac gagagcacgg
     1501 ccgggccccg cggcgactcg gccacggggc ctgccggatc gtcgccggcg gctgggctgg
     1561 cgtgcgtcag gcccgccgac ctcgccggtt cgatccgcac ctcgacgaag tcccgcaacc
     1621 gaaccggcgt tcgatcctcg ccgggctcga gcgcccagcc ggctgccggc ccgacggtgg
     1681 gccggaccgg tgtcgctggt gaaccctgcg cgtcgagcga ctcccagcac tcccggatct
     1741 cttcaccggt cagggggcgt cgctggcgat ccagcccgca gtagccgagc tgcgcggcga
     1801 ccgaccggcg gaaatggcgg caggatccgc aggcggtgct ggaacggtgg cagacccagc
     1861 agcgtgccgt ctctgcctgg ggtgtcgcgc agtgcggaca gcgccacatc ggcatgggcc
     1921 gatggtagct gcgcgcgggt cgcctgtcga tccccgcgag tgagcgtccg ggctacgacg
     1981 ggctgggggc gggctggacg gtgatgaccg actggtcctg cgtcgagccg aactggtcgc
     2041 tggagacgag gaccgtggcg aggccctggc ccgggtcggc gccggcgggg atcgaggtcg
     2101 tgaacgtggc ccggccgtcg gcatcggtca cctggtcgcc ggtcacggtg gggatgcccg
     2161 ggatgctcag ggtgaaggtg accgccgcgc cgaccagcgc cttgccgtcg ggatccgaga
     2221 cggtgacgcg cagggtgagg tcctccggga gcttggagac cgagatccga taggccgagg
     2281 cgctgagggt cgcggtcagc ttgccgttcc cgcgacgcac ggtcaggacc agctccttgg
     2341 cgttcccggc cgggtccgtc cccgtgatcg tgatctcgtt gatccccgtc cccagggcga
     2401 gggtcaggga gaacgtgccg tcggtggcgg cggtgccggt gatcgaggca ccgttggcgg
     2461 cgttgtgggc gatcatcgtc gagcgcgcct gggtcttgcc cacgatctgg accgtgtcgc
     2521 cgttgacgac cgcgccttcc ttcggcgagg tgatggtgat cttggccggc gcctggtcga
     2581 gcacgtaccg cacgacggcc gacggctgcg attcgccacc gggcccgacg atcgtgaccg
     2641 agaagtcgtt gatccccttg gtcagctcca ccgggatgat cgtctgggcc gtggccgcca
     2701 gtggcgcctc ctggatcggg gccggcgcct ggtccttgag ggcgaggtag acgcggatcc
     2761 gctggttcgg atcgccgacc acgcccggcg gcaccgtgac gacgaggtcg acggtcggct
     2821 cctgcgtgta cggctcggtc ggctgctgga gcgtgggagc gtcggcgaca gcggccagcg
     2881 acggggcggg cgtcggggtc gaggtcacgc tcgtcacgaa cccgccgagc gccgagctga
     2941 tcccgccgaa taccttgccc aggccgcccg cgccgacgta cagcaccgcg accccgagca
     3001 gcgcgatcgc caggaccagc cccagcttgc cgaccagggg caggccacgg ttgcgctgga
     3061 tcggccgatg gacggacagc cgggtcgagg aaggcgcccg cggacgggtc ctgaccggcg
     3121 ccgggcggcc gctcgacggg ggccggggac ggacatgtgt ctgccgcggg tcgcgccggg
     3181 tggtcatcgt cacggattgt cgcacgtgcc gatccgattc gagatcgtgc cattgggtgc
     3241 actgcgttgt actctggctg ggtctcgcac gacggagcgt cgtgtgcgag gtgcctcgag
     3301 ggagggagcg tgcaggctcg agatccacga tccggccgcc cggcggccgg tccgaccggt
     3361 cgacccgcct ttggcgtggg tccgatcgcc cgtgtgactc cgtcgccgct cgcctcccga
     3421 cccgtacccg ctccgcccga ggccccgacc aacggcgccg gcgcccgtgg cgccggtccg
     3481 cggccggtcg ccactcgcca gctgccggtc ggcttcggac tgccgaacct gcgccgcaac
     3541 gtgtgtccgc atttctatat gacgggtgct cgcggggcga tcccgatcca ggcgccacat
     3601 ctgctgaagg cactgatccg ccaggaaagc acgacgtctc gatgccagct ccggggcggc
     3661 gtccacatgg agcaggggta cgtcaacgac gtgtgtctca cgccccgctt caaccagtgc
     3721 atcttctacg aggaagagct gtcccgggag tgacgctcca gccgtgacca acggacgggc
     3781 aggcctcgac tattggtcgg cggtgcgcgc gctcgaggag cgcggacgat tcggcgtgcg
     3841 gctcggcctc ggccggactc gggcactcct cgccgcgatc ggccatccgg agcgcgagat
     3901 ccgtggcgcc ctcatcgccg gcacgaacgg caagggcagc gtgctggccc tcgccgagtc
     3961 ggccttacgg gccgccggcc atcacgtcgg ggcgacgccc aagccgcacc tggtctcgta
     4021 ccgtgagcgg atccaggtcg acggccaccc gatcgatccc gacgacttca gccgcctgac
     4081 ggcgcgcgtg ctgggggtca gcggggccgt cgcacggcgc tacggcgagc cgaccgagtt
     4141 cgagctgctg acggccgtcg tcttcgcgcg cttcgcggag gtccggccgg atgtctcgct
     4201 ggtggaggtg ggcctcggcg gccggctgga tgcgacgcac gcctgggacg gcggcgtggc
     4261 ggccgtcacc aacgtcgccc tcgatcacac cgaccgcctg ggcagcacga tcgtcgcgat
     4321 cgcccgcgag aaggccgcga tcatcgaacg cggcgacctg gcggtcaccg gcgcggacgg
     4381 cgacgggctc gcggtcgtcc gcagacgggc gcggcggctg ggcgtgcccc tgaccgaagt
     4441 cggcccggcg cccttgctcg gctgggatcg cgacggcatc gaggtcgatc tcgccggact
     4501 gggccggacg cgcgtctcgc tgcggggccg tcaccaggcc gcgaacgtgg cgatcgccga
     4561 tgccctgctc gacgccctcg acacggccgg gatcgccggc acgcccgccg aggcacggcg
     4621 aaccggttac gcgaccgccg tctggccagg ccgcctggag ctcgtccgcg ccgacgggcg
     4681 cgacgtgctg ctcgacggcg cccacaaccc cgccggcgcc gccgccctgg cgacggccct
     4741 cgacgacctc cggccgttcc tggccgacgg ccccctcacg ctcgtgaccg cgtcgatggc
     4801 cgacaaggac gtcgacggcg tcatcgccgc tttggcccgc acaaccgcgc tgggcgatgc
     4861 cacgatcgtg tgcacgagcg tcgatctggc gcgtgccatg gacgcggcga cgctgggggc
     4921 ccggtggcgg cgacaccggc ccacggcgac catcctcgtc gagccggatc cggtcgcggc
     4981 cgtggaccgg gccatcgcgc gtcgggaggc cggaaacgga ccgatcgtgg tcgcgggttc
     5041 gctctatctt gtcggagccg cgcgcgggca cctggtcgac gacccggaca cgcgcga
//
LOCUS       DATDDI010000641         2919 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_263952, whole genome shotgun sequence.
ACCESSION   DATDDI010000641 DATDDI010000000
VERSION     DATDDI010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263952"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..1450)
                     /gene="nrfD"
                     /locus_tag="VIU37_09190"
     CDS             complement(149..1450)
                     /gene="nrfD"
                     /locus_tag="VIU37_09190"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HEY6014172.1"
                     /translation="MSVASPPIAAARRRPVPALVAWILLLLGLIAVGLAAFTYQFVNG
                     LSVTGMRNVVMWGQYILFFMFFVGLSAGGLIVASAGRLFGVQAFKPITRLAVLEATVA
                     VMLAATFILPDLGRPERILNIPLYFNPTSPMVWDIAIVMVYMAMSSFYVWLYTRADLA
                     RRGSWLAFGTGTSERTMAREERIKSVMAWIALPAAIMLHSITAWIFGLQISRGFWYSS
                     IMAPMFIASALVSGMGLVILLALILRRLGRLSFDNSLVTMLGGLLGVFIAVEGFLLLA
                     EYLTATYPGAPEGEAAARMLSGPYLPLFLFEVVVGLVVPFVVLAIRRLRHDPRWVALA
                     AGICIVGIFVHRLNLVLNGLSVPNLELPPGLPFGVPRDGVSSFSLYYWYVPTIVEWLI
                     VIGVLAFGALLFTAAAWYLPLEEHGAPAAGPASTGAEPARD"
     gene            complement(1447..2160)
                     /locus_tag="VIU37_09195"
     CDS             complement(1447..2160)
                     /locus_tag="VIU37_09195"
                     /inference="COORDINATES: protein motif:HMM:NF024644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6014173.1"
                     /translation="MTEPKVAPVEALSAASRAWGEIGPHSDRPRWGMVVDQERCVGCW
                     SCAVICKSENDVPLGMWWNRILTEGEAMDQPEASRVGGLEMHWLPLACQHCANAPCVK
                     VCPVQATYRRSDGIVMQDTDRCIGCRYCMIACPYGVRNFNWGAPARPTPYETGMVRSR
                     PLGTVEKCTMCVQRLVDGQVPSCVWSCPAQARVFGDLNDPDSRINALIAEREATVLLE
                     QAGTQPSVAYLPPRRRSAL"
     gene            complement(2160..>2919)
                     /locus_tag="VIU37_09200"
     CDS             complement(2160..>2919)
                     /locus_tag="VIU37_09200"
                     /inference="COORDINATES: protein motif:HMM:NF013717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEY6014174.1"
                     /translation="VDPAKAAEFFEMDEAAAIEAILAAGDVPGGPTEGITLDMLKAGP
                     VRLRVPDPDIPFLGQIRDLVPFPPRSLPAKLEQTAAFLPTRRIEFYKEEQRFRDLGET
                     VPTYKAPFDDGVHDPTTWPLRLLSPHSKWRIHSSYANNAWLAELHGGRPEVFVSPQDA
                     AARGIETGDEIRVFNTRGEVVAWAHVTPSEQPGSVTLYEGWWPRQFRKGKGVNELTSS
                     AVNPIHEVHFVGNMWAPSTGWKDCRCEIEKAGVS"
BASE COUNT          498 a         1016 c         1013 g          392 t
ORIGIN      
        1 tctcgccctg gccgagggca tgatcgacgg tctcggcgac gatcgcgtca cggcgcgact
       61 ggacccccaa ccgggatggt gctgcgtcgc catcgacacg gagcgtcccg cgcactgacc
      121 ggcgccgtgc cggacctcgg gtgggagctc agtcgcgggc tggctcggct cccgtcgacg
      181 cgggacccgc tgcaggcgcc ccatgctcct cgagcggcag gtaccacgcc gcagcggtga
      241 acagcagcgc cccgaaggcc agcacaccga tcacgatcag ccactcgacg atcgtgggga
      301 cgtaccagta gtagagcgag aacgaggaga ccccgtcccg tgggaccccg aacggcagtc
      361 cgggcggcag ctcgaggttc ggcacggaca ggccgttgag gaccaggttg aggcggtgga
      421 cgaagatgcc gacgatgcag atccccgcgg cgagggcgac ccagcgcgga tcgtgccgga
      481 gtcggcggat cgccaggacc acgaacggga cgacgagtcc gaccaccacc tcgaacagga
      541 acagcggcag gtacgggccc gagagcatgc gggcggcggc ctcaccttcg ggggcgcccg
      601 ggtacgtcgc cgtcaggtat tcggcgagca gcaggaaccc ctcgacggcg atgaacaccc
      661 cgagcaagcc gccgagcatc gtcacgaggc tgttgtcgaa cgacagcctc cccagccggc
      721 ggaggatgag ggcgagcagg atcacgagcc ccatgccgga caccagggcc gacgcgatga
      781 acatcggcgc catgatcgag ctgtaccaga acccccggct gatctggaga ccgaagatcc
      841 aggccgtgat cgaatggagc atgatcgccg ccggcagcgc gatccaggcc atgaccgact
      901 tgatgcgctc ttcgcgggcc atcgtccgct ccgacgtgcc ggtgccgaac gcgagccacg
      961 aaccgcgccg cgccaggtcg gcccgggtgt acagccaaac gtagaacgac gacatcgcca
     1021 tgtagaccat cacgatcgcg atgtcccaga ccatcggcga ggtcgggttg aagtagagcg
     1081 ggatgttgag gatccgctcc ggtcgtccga gatccgggag gatgaacgtg gccgccagca
     1141 tgaccgcgac cgtcgcctcc agcaccgcca gccgggtgat cggcttgaac gcctggaccc
     1201 caaacaggcg cccggccgag gcgacgatga ggccgccggc cgacaggcca acgaagaaca
     1261 tgaagaacag gatgtactgg ccccacatca cgacgttgcg catgcccgtg acgctcaggc
     1321 cgttgacgaa ctggtaggtg aacgccgcca gccccaccgc gatcaggccg agcaggagca
     1381 ggatccacgc gaccagggcc ggcacgggcc ggcgccgggc ggcggcgatc ggcggggacg
     1441 cgacgctcac agcgcggacc tccggcgcgg cggcaggtac gcgaccgacg gctgggtccc
     1501 ggcctgctcc aggaggacgg tggcttcccg ctcggcgatg agcgcgttga tccgggaatc
     1561 agggtcgttc aggtccccga agacgcgggc ctgcgccgga cacgaccaga cgcacgatgg
     1621 cacctgcccg tcgaccagcc gctggacgca catcgtgcac ttctccacgg tgccgagcgg
     1681 gcgcgatcga accatgcccg tctcgtacgg cgtcggccgg gcgggggcgc cccagttgaa
     1741 gttccggacg ccgtaggggc aggcgatcat gcagtaccgg cagccgatgc accggtcggt
     1801 gtcctgcatg acgatcccgt cgctgcgacg gtaggtggcc tggaccggac agaccttgac
     1861 gcacggggcg ttggcgcagt gctggcaggc gagcgggagc cagtgcatct ccagcccgcc
     1921 gacgcgactg gcctccggct ggtccatcgc ctcaccctcg gtgaggatcc ggttccacca
     1981 catcccgagc gggacgtcgt tctcgctctt gcagatcacc gcgcacgacc agcagccgac
     2041 gcagcgctcc tggtccacga ccatccccca ccggggccgg tcggagtgcg gtccgatctc
     2101 gccccacgcc cgcgacgccg ccgacagggc ctcgaccggt gcgaccttgg gctccgtcat
     2161 cagctcaccc cggccttctc gatctcgcac cggcagtcct tccagccggt cgagggggcc
     2221 cacatgttgc ccacgaaatg gacctcgtgg atggggttga cggccgacga ggtcagttcg
     2281 ttgacgccct tgcccttcct gaactggcgt ggccaccagc cctcgtacag cgtcaccgaa
     2341 ccgggctgct cggacggggt cacgtgcgcc caggcgacga cttcgccgcg ggtgttgaac
     2401 acccggatct cgtcgccggt ctcgatcccg cgggccgccg cgtcctgcgg cgacacgaac
     2461 acctccggcc gcccgccgtg cagctcggcc agccaggcgt tgttcgcgta cgaggaatgg
     2521 atccgccatt tgctgtgagg cgagagcagc cgcaatggcc aggtcgtcgg gtcgtggacc
     2581 ccgtcgtcga acggcgcctt gtacgtgggg acggtttcgc ccaggtcgcg gaagcgctgc
     2641 tcctccttgt agaactcgat ccggcgggtc ggcaggaacg ccgccgtctg ctcgagcttc
     2701 gcgggcagcg accgaggtgg gaaggggacg aggtcccgga tctgtcccag gaacgggatg
     2761 tcggggtccg ggaccctcag ccgtaccggg cctgccttga gcatgtcgag ggtgatcccc
     2821 tcggtcgggc cacccgggac gtcgccggcc gccaggatgg cctcgatcgc cgccgcctcg
     2881 tccatctcga agaactcggc ggccttggcg ggatcgaca
//
LOCUS       DATDDI010000642         1749 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_658954, whole genome shotgun sequence.
ACCESSION   DATDDI010000642 DATDDI010000000
VERSION     DATDDI010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658954"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(213..1454)
                     /locus_tag="VIU37_09205"
     CDS             complement(213..1454)
                     /locus_tag="VIU37_09205"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014175.1"
                     /translation="MHAPATGRAPWSLRVLFLGTGAWVAAVAPFVVVMLRTRGLDTVT
                     IGVLSGGSALVATLVVPAWGHLADVLVGRALAFRIGLALAICAAIVLVLPVPLPAFAL
                     TLALFSVLPILFLSLADALAVDGLPAPERQYGALRALMSLAFAVGVIVAGIVYDAAGY
                     AAVPWIALAWSIGLLVLLGWVPDRTRDPAVRAIAGREGGESAAGRFGSVSRVLAVQPR
                     FLAVLAVFTLAYTGLQGSMVFLPIRIVELGGQPSDVALTYGIASFAEVPGLVLVGWLG
                     RRIGIRWLVVLAFVAYGLCVASWGVLPTPIAINVTRLITGVCFGLLAGARVLIVARLL
                     PEPLQATGQAMGQAATSALGSAFGGLVAGVVYGGFGAVAFFGFAGVLSIAGGLGAWLV
                     LHGRVGAPVRVAERPVRPALD"
     gene            1551..>1749
                     /locus_tag="VIU37_09210"
     CDS             1551..>1749
                     /locus_tag="VIU37_09210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014176.1"
                     /translation="MDLAMVFVLPLAFGLASLGEAVHAAVALTDREAQEERRPDHGAD
                     QANREQFHRGIRSKPVVRAAST"
BASE COUNT          314 a          632 c          631 g          172 t
ORIGIN      
        1 ggcggctcgc cgcgacgatt cggccattgc ggacgcgttc gcgtcgatcc cgatgacgaa
       61 ggcgtgcggg tctgccgccg cccgagccag caccgcccgg ccgtcgccgg taccgaggtc
      121 gacgatcacc cggtcggccc gggcgatctg ctggttgagt tagccgacgt cgacctcgac
      181 gaggcgccgg ccgatgacct gtcgcatggc gctcagtcta gcgcgggccg gacgggacgc
      241 tcggcgaccc gaaccggggc gccgactcgc ccatggagga ccagccaggc gcccagacct
      301 ccggcgatgg acagcacacc ggcgaagccg aagaacgcga cggctccgaa cccgccgtac
      361 acgacgcccg cgacgaggcc gccgaatgcg ctcccgagcg ccgaggtcgc cgcctggccc
      421 atcgcctgtc cggtcgcctg caggggctcc ggcagcaagc gcgcgacgat caggacccgc
      481 gcgccggcga gcaggccgaa gcagacgccc gtgatgaggc gggtgacgtt gatggcgatc
      541 ggcgtgggca gcacgcccca cgaggcgacg cacaggccgt acgccacgaa cgccagcacg
      601 accagccagc gaatgccgat ccgtcggccg agccagccga ccaggaccag gcccggcacc
      661 tcggcgaacg aggcgatgcc gtacgtcaac gcgacgtcgg acggctgtcc gccgagctcc
      721 acgatccgga tcggcaggaa gaccatcgaa ccctggagtc ccgtgtacgc cagcgtgaac
      781 accgccagca cggcgaggaa ccgcggctgc acggccagca cgcggctgac cgagccgaaa
      841 cggccggccg cggactcccc tccctcgcgg ccggcgatcg cccggaccgc cggatcgcgc
      901 gtccggtccg gaacccatcc gagcagcacg aggagcccga tggaccaggc cagggcgatc
      961 catgggaccg cggcgtagcc ggccgcgtcg tagacgatcc cggcgacgat gacgccgacg
     1021 gcgaaggcga ggctcatcag cgcccgcagc gccccgtact ggcgttccgg cgccggcagg
     1081 ccgtcgaccg cgagggcgtc cgcgagcgac aggaagagga tcggcaggac cgagaacagg
     1141 gccagtgtca gcgcaaaggc cgggagcggg accggcagga cgaggacgat ggcggcgcag
     1201 atggcgaggg caagcccgat ccggaacgcc agcgcccgac cgacgagcac gtcggccagg
     1261 tgcccccagg ccggcacgac gagcgtcgcg accagggccg agccgccgga cagcacgccg
     1321 atcgtgacgg tatcgagacc ccgggtgcgg agcatcacca cgacgaacgg cgcgaccgcc
     1381 gcgacccacg caccggtgcc gaggaacagg actcgaagcg accacggcgc tcggccggtg
     1441 gcaggggcat gcattcggac gcaagcctag cgatccgcga gtcggacgga tcgccgaacc
     1501 cgtcaggcgt ccgggcagca gatcgggcag tggccttcgg cgtacaagcc gtggacctgg
     1561 cgatggtgtt cgtcctgccg cttgcgttcg gcctcgcttc gctcggtgag gcagtgcacg
     1621 cagcggtcgc actcaccgac cgggaggcgc aggaggaacg ccgccccgac catggcgccg
     1681 atcaagctaa ccgagagcag ttccatcgcg ggattcgtag caaaccggtg gttcgcgccg
     1741 cgtcaacgg
//
LOCUS       DATDDI010000643         2096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_679792, whole genome shotgun sequence.
ACCESSION   DATDDI010000643 DATDDI010000000
VERSION     DATDDI010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679792"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(268..1599)
                     /locus_tag="VIU37_09215"
     CDS             complement(268..1599)
                     /locus_tag="VIU37_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014177.1"
                     /translation="MKILSKRRLLAAAALTVIAAAAAMGGQALAGSKDGTASAKGLGP
                     ISGLLPRDHLTEESAIQVDLSKESVRLPLYKGRANGETVWYVLLDASDQGIAHDLGVN
                     YAPKLSNLAINDPEAVQTVTLDSPTPDQNKFGQAIVNFQGAPDFSPARIAEPGPTGFP
                     LANFQPGAVARPGYSPFIRIAGAPTVYSAPIIATGDGPFDVVHHTNTGDRVLGIHIAG
                     PSAPGQYEESWVDLLFVKGFDAGQPIVYISTDAGQPLTSVLERSTYVPALDKAAYNGG
                     DDFLGSARERLFGFVNGQTGADNSNAQGFVHLVKDGHASEDASAGNTALIDALRNGGD
                     LLNVFGDFPTEKDPRHADAYSPLWDAQLGLWTDKAVKQGLNTRQIDEVQVFNLAATRP
                     DLLTGIDPATGQPAPYGSVGVDINCAVIGFTDKAPTANLADPVPNSQFPPR"
     gene            1737..>2096
                     /locus_tag="VIU37_09220"
     CDS             1737..>2096
                     /locus_tag="VIU37_09220"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY6014178.1"
                     /translation="MRLTVQASGDDPGRPRLAIRLFGALEIVDGERVLGPRDLGGARP
                     KQLLEILVAARGHRVPTDRIAELIWDTQPPGDIAASIQTFVSVLRRRLVADRDRARQL
                     VVTEAEAYRFATDVVDLD"
BASE COUNT          283 a          685 c          770 g          358 t
ORIGIN      
        1 gaagtgcggg agcactcgga tcgagtcgtc gatcgcgacc gggatgccgc ttcgtgccgc
       61 cgccgaggcg acagcacgaa gggcggcgct gttgagcgag cttcgccgca ggctgccgga
      121 gatcgcgagg atcacttacg acccctggtt ctcgatcttc gttccggtcg gcgcgaggat
      181 ggcgatgagg aacactgcgt tcacggggcc tcctttcggc gaacgggtgg acggcgggcc
      241 gtgctcggcc cgccgtccgg ttcgcggtta gcggggtggg aactgcgagt tggggaccgg
      301 gtccgccagg ttggcagtgg gcgccttgtc ggtgaagccg atcaccgcgc agttgatgtc
      361 gacgccgacc gacccgtacg gagcgggctg gccggtcgcc gggtcgatgc cggtgagcag
      421 gtcgggccgc gtggcggcga ggttgaagac ctgcacctcg tcgatctgcc gggtattcag
      481 cccttgcttg acggccttgt cggtccaaag gccgagctgc gcgtcccaga gcgggctgta
      541 ggcgtcggcg tgccgcgggt ccttctcggt cgggaagtcg ccgaacacgt tcagcaggtc
      601 gccgccgttt cggagcgcgt cgatcagcgc ggtgttgccg gcgctcgcgt cctcggaggc
      661 gtgcccgtcc ttgaccagat gcacgaagcc ctgcgcgttc gagttgtccg cgcctgtctg
      721 gccgttgacg aagccgaaca ggcgctcgcg ggcggagccg aggaagtcgt cgccgccgtt
      781 gtaggccgcc ttgtcgagcg ccggcacgta ggtcgagcgc tccagcacgg aggtcagcgg
      841 ctggccggcg tcggtcgaga tgtagacgat cggctggccg gcgtcgaagc ccttcacgaa
      901 cagcaggtcg acccacgact cctcgtactg tcccggtgcc gacggcccgg cgatgtggat
      961 gccgagcacg cgatcaccgg tgttcgtgtg gtggacgacg tcgaacgggc cgtcgccggt
     1021 cgcgatgatc ggcgcgctgt acaccgtcgg ggcgccggcg atgcggatga acgggctgta
     1081 gcccgggcgg gcgaccgcgc cgggctggaa gttcgccagc gggaagccgg tcgggcccgg
     1141 ctcggcgatg cgggcggggc tgaagtcggg tgcgccctgg aagttgacga tcgcctggcc
     1201 gaacttgttc tggtccgggg tcggcgagtc gagcgtcacc gtctgcacag cctcggggtc
     1261 gttgatcgcc aggttgctga gcttgggggc gtagttgacg ccgaggtcgt gggcgatgcc
     1321 ctggtcggat gcgtcgagga ggacgtacca gacggtctcg ccgttcgccc gccccttgta
     1381 cagcggcagc cgcaccgact ccttgctcag gtcgacctgg atcgcactct cctcggtcag
     1441 atggtcgcgg ggcagcaggc cgctgatcgg gccgagcccc ttcgccgagg ccgtcccgtc
     1501 cttggagccg gcaagagcct ggccccccat cgcggcggcc gcggcgatca cggtcagcgc
     1561 ggccgctgcg agcagccgcc gcttcgacaa gatcttcaac gcgtctcctt tcatccggcg
     1621 ctgccggatc ggcttggtcg ttgtcggcgg ccaagctacg aagacgccct gagtcagagc
     1681 tgaccggcgt ctgagtcggc tgtaacgaat cgggaagtgc actgtcagtt cactcgttga
     1741 gactcaccgt gcaggcttcc ggcgacgacc ccggccgtcc tcgtctcgcc atcaggctct
     1801 tcggcgccct cgagatcgtg gacggcgaac gcgtgctcgg ccctcgtgac ctcggcgggg
     1861 ctcgtccgaa gcagctgctc gagatcctgg tcgccgcgcg tgggcaccgc gtccccaccg
     1921 accggatcgc cgagctgatc tgggacacac agcctccggg cgacatcgcg gcgtcgatcc
     1981 aaacgttcgt ctcggtcttg aggcggcgcc tcgtcgccga ccgcgaccgc gcccggcagc
     2041 tcgtcgtgac ggaggctgag gcataccgct tcgccaccga cgtggtcgac ttggat
//
LOCUS       DATDDI010000644         4016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_201251, whole genome shotgun sequence.
ACCESSION   DATDDI010000644 DATDDI010000000
VERSION     DATDDI010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4016
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201251"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1265
                     /locus_tag="VIU37_09225"
     CDS             <1..1265
                     /locus_tag="VIU37_09225"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014179.1"
                     /translation="GVTRRTSWFVAKRTSGSIQALGDKLQARGFARRAGVPVVPGTLE
                     PARVDRPDEVASIVAQANEIGYPLLVKAAAGGGGRGMRRVAAPAELPAALAAGSREAA
                     DAFGDGAVYLEREIVPARHIEVQLLGDTGGRVIAIGERDCSIQRRHQKLVEEAPAPGL
                     APGERGRLHDLAVRVASAAGLVNAATAEFLRAPDGSFFFLEVNTRLQVEHGVTELVSG
                     LDIVREQFWLAAGRPLSAEAIAASERAAEPAGHAIEVRIAAEDPSRAFTPTPGLVRRW
                     AMPSGPGVRVDTAIAEGDRVPPDYDNLVAKIMVHAGDRPAAIGRLRRALDETEIAGIQ
                     TTLPFHRFVARHAAFLEGELSTGWVGDWWDGPAELARATGPALLAAGLDALVRGLATS
                     PVAAASMPPAEGGWPGAGMSSSIDRWRP"
     gene            1358..2011
                     /locus_tag="VIU37_09230"
     CDS             1358..2011
                     /locus_tag="VIU37_09230"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY6014180.1"
                     /translation="MRVAVAASSGRAAGEAIVIEPPEIPLAPAPHVVGTGVLGGISAE
                     SIALAEVPDDDDGIAIVDGTAVRVRLERLDEIHGRLTWLGDAGSVRTSVLLLPLERHA
                     GPSSGVVRREVVVDGWQIEVEIESERRASLRERARRGREETAHGGPTHVRAIIPGRIV
                     SVSVVPGDPVEAGQQLLVVEAMKMQNELRAPRDGVVSSVSVGVGGTIEVGDLLLVLE"
     gene            2008..3711
                     /locus_tag="VIU37_09235"
     CDS             2008..3711
                     /locus_tag="VIU37_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY6014181.1"
                     /translation="MSGSTANPRPARPAGEAPDPGRERWRELVRAKALRGAAERRERF
                     ETSSGIPIQDLYTPADVAGLDEERDLGRPGEYPFTRGVQPTMYRSRFWTMRQYAGFAT
                     AEETNRRFRYLLEQGQTGLSVAFDLPTQMGYDSDAREAEGEVGRVGVPIASLADMAVL
                     LDGLPLDRVSTSMTINATAPVLLALYVAAAEAQGVPRDQISGTTQNDILKEYIARGTY
                     IFPPRPSMRLVTDVFEFCAAELPKWNTISISGYHMREAGATAAQELAFTLADAIAYVE
                     AAVARGLDVDDFAGRLSFFFAAWSELFEEVAKFRVARRMWATIMRERFGATNPRSWVC
                     RFHVQTAGSSLTAQSIDNNVVRTTIQALAAVLGGAQSLHTNSRDEALALPTEQAARLA
                     LRTQQILAYEAGVTETPDPLAGSYYVESLTNQLEAAAWGYLDEIEAMGGTLAAIEGGF
                     QQRQIQEAAYRVQQAIESGDQVVVGVNRFRDDAVSTPPLHRIDPDGERRQVERVRRVR
                     TERSADAWASAMDRLEAVARGDGNLMPPILEAVRAFATVGEISDRLRVAWGEHRELIT
                     V"
     gene            3722..>4016
                     /locus_tag="VIU37_09240"
     CDS             3722..>4016
                     /locus_tag="VIU37_09240"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6014182.1"
                     /translation="MPTLPPAPPLPEAVRRLGKVHHVALIVRSVEDSLGLWRDMLGLE
                     LETVMDIPDDRVRIAFLAVGESKVELVEPTDDTTGVARFLAAKGEGFHHVCFEV"
BASE COUNT          534 a         1455 c         1492 g          535 t
ORIGIN      
        1 ggggcgtgac gaggcgcacg agctggtttg tcgcgaagag aacatcggga tcgatccagg
       61 cgctcggcga caagctgcag gcccgcgggt tcgcccgccg ggccggcgtc ccggtcgtgc
      121 cggggacgct cgagccggcc cgcgtggacc gcccggacga ggtcgcctcg atcgtcgcgc
      181 aggccaacga gatcggctac ccactgctgg tgaaggcggc ggccggtggc ggcggccggg
      241 gcatgcgtcg ggtggccgcg cccgccgagc tcccggccgc gctggcggcc ggctcccgcg
      301 aggcggccga cgcgttcggg gacggtgccg tctacctgga acgggagatc gtcccggcac
      361 ggcacatcga ggtccagctg ctcggcgaca cgggtggccg cgtgatcgcc atcggggagc
      421 gcgactgctc gatccagcgc cggcaccaga agctcgtcga ggaggcgccg gcgcccggtc
      481 tcgcgcccgg cgagcgaggt cggctccacg acctcgccgt gcgggtcgcc tccgcggccg
      541 gcctggtcaa cgcggcgacc gccgagttcc tgcgagcccc ggacggatcg ttcttcttcc
      601 tcgaggtcaa cacccgcctc caggtcgagc acggcgtcac cgagctcgtc agcggcctcg
      661 acatcgtccg ggagcagttc tggctggccg cggggcgacc gctgtccgcg gaggcgatcg
      721 ccgcgtccga gcgagccgcc gagccggccg ggcacgccat cgaggttcgg atcgccgcag
      781 aggacccgtc gcgggccttc acgcccacgc cgggcctcgt ccgccgctgg gcgatgccct
      841 cgggcccggg cgtccgggtg gacacggcga tcgcggaggg cgaccgggtc ccgcccgact
      901 acgacaacct ggtcgccaag atcatggtcc acgccggcga ccggccggcg gcgatcggac
      961 gcctccggcg cgcgctggac gagaccgaga tcgccggcat ccagacgacc ctgccgttcc
     1021 accggttcgt ggcgcgccat gccgccttcc tcgagggcga gctgtcgacc ggttgggtgg
     1081 gggactggtg ggacggtccg gccgagctcg cccgggcgac gggtccggcc ctgctggcgg
     1141 ccggcctcga cgcgctcgtc cgcgggctgg cgacctctcc cgtggcagcg gcctcgatgc
     1201 cgcccgccga gggcggctgg cccggcgccg gcatgtcctc ctcgatcgac cgttggcggc
     1261 catgaccgcc cgacgcgcgc agccaggggg tcggacccgc aggcaagaac ccgggccgcc
     1321 agccgtagcg gaggccaggc tcgtcgaccc ccgcgccgtg cgcgtcgccg tggcggcctc
     1381 atccggccgc gccgcgggcg aggcgatcgt gatcgagccg ccggagatcc ccctggcgcc
     1441 cgccccgcac gtcgttggca ccggcgtcct cggcgggatc agcgccgagt cgatcgcgct
     1501 ggccgaggta ccggacgacg acgacgggat cgccatcgtc gacgggaccg cggtccgggt
     1561 ccggctggag cgactcgacg agatccacgg ccggctgacc tggctcggcg acgccgggtc
     1621 ggtgcgaacc tcggtcctcc tgttgccgct cgagcgccac gccgggccgt cgtccggcgt
     1681 cgtccggcgc gaggtggtgg tcgacggctg gcagatcgag gtcgagatcg agtccgagcg
     1741 acgggcatcc cttcgcgagc gagcgcgccg cggccgcgag gagaccgcgc atggcggacc
     1801 gacccacgtt cgggcgatca ttcccggacg gatcgtgtcc gtttcggtcg tcccgggcga
     1861 tcccgtggag gccgggcagc agctcctggt ggtggaagcg atgaagatgc agaacgagct
     1921 tcgagccccg cgtgacgggg tcgtctcgag cgtgtccgtg ggcgtcggcg gcaccatcga
     1981 ggtcggggac ctcctgctgg tgctggagtg agcgggagca cggccaaccc acgcccggcc
     2041 cgcccggccg gcgaggcgcc cgacccgggc cgggagcgct ggcgcgagct cgtccgcgcc
     2101 aaggcgttgc gtggggccgc cgaacggcgg gagaggttcg agacctcgtc gggcatcccg
     2161 atccaggacc tctacacccc cgccgacgtg gccgggctcg acgaggagcg cgatctgggc
     2221 cgtcccgggg agtacccctt cacccgcggc gtccagccga cgatgtaccg gagccggttc
     2281 tggaccatgc gccagtacgc cggcttcgcc acggccgagg agaccaaccg gcggttccgc
     2341 tacctcctcg agcagggcca gaccgggctg tcggtcgcgt tcgacctccc gacccagatg
     2401 ggctacgact cggacgcccg cgaggcggag ggggaggtgg gccgcgtcgg tgtcccgatc
     2461 gccagcctgg ccgacatggc cgtcctcctc gacgggctgc cgctcgaccg ggtcagcacg
     2521 tcgatgacga tcaacgccac ggcgccggtc ctgctcgcgc tctacgtcgc ggcggccgag
     2581 gcgcagggcg tcccccgcga ccagatctcg ggcacgaccc agaacgacat cctcaaggag
     2641 tacatcgcac gggggacgta catcttcccg ccccgaccgt cgatgcggct ggtgaccgac
     2701 gtcttcgagt tctgcgcggc cgagctcccc aaatggaaca ccatttcgat ttcgggctat
     2761 cacatgcggg aagccggggc gaccgccgca caggagctgg cgttcacgct ggccgacgca
     2821 atcgcctacg tcgaggcggc cgttgcgcgc gggctggacg tggacgactt cgccgggcgg
     2881 ctgtcgttct tcttcgccgc ctggtcggag ctgttcgagg aggtcgccaa gttccgggtg
     2941 gctcggcgca tgtgggccac gatcatgcgc gagcggttcg gggcgaccaa cccgcgctcc
     3001 tgggtctgcc gcttccacgt ccagacggcc ggttccagcc tgaccgccca gtcgatcgac
     3061 aacaacgtgg tccggacgac gatccaggcc ctcgccgcgg tcctcggcgg ggcccagagc
     3121 ctgcacacca actcccgcga cgaggcgctc gcgctgccga ccgagcaggc ggcccgcctg
     3181 gcgctccgga cgcagcagat cctggcctac gaggccggcg tgaccgagac gcccgatccg
     3241 cttgcgggct cctactacgt cgagagcctg accaaccagc tcgaggcggc ggcctggggc
     3301 tatctcgacg agatcgaagc gatgggcggg acgctggcgg cgatcgaagg cgggttccag
     3361 cagcgccaga tccaggaggc ggcctaccgg gtccagcagg cgatcgagtc cggcgaccag
     3421 gtcgtggtcg gggtcaaccg gttccgcgac gacgcggtct cgacgccgcc gctgcaccgg
     3481 atcgaccccg atggtgaacg ccgccaggtc gagcgcgtgc ggcgcgtccg gaccgagcgg
     3541 tccgcggatg cctgggcctc ggccatggac cggctcgagg cggtcgcccg cggcgacggc
     3601 aacctgatgc caccgatcct cgaggcggtg cgcgcctttg ccaccgtcgg cgagatcagc
     3661 gaccggctgc gcgtcgcctg gggcgagcat cgcgagctga tcacggtata ggctgcgcgt
     3721 catgccgacc ctgccgcccg cgccaccatt gcccgaggcc gtccggcggc tcggcaaggt
     3781 ccaccacgtg gcgctgatcg tgcgctcggt cgaggactcg ctcggcctgt ggcgcgacat
     3841 gctcgggctc gagctcgaga cggtgatgga catccccgac gaccgggtgc ggatcgcctt
     3901 cctggcggtc ggcgaatcga aggtcgagct ggtcgagccg accgacgaca cgaccggcgt
     3961 cgcgcgcttc ctggcggcga agggcgaggg cttccaccac gtctgcttcg aggtcg
//
LOCUS       DATDDI010000645         1838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_513430, whole genome shotgun sequence.
ACCESSION   DATDDI010000645 DATDDI010000000
VERSION     DATDDI010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513430"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..948
                     /locus_tag="VIU37_09245"
     CDS             <1..948
                     /locus_tag="VIU37_09245"
                     /inference="COORDINATES: protein motif:HMM:NF013662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HEY6014183.1"
                     /translation="GDPFLIVEAMTIAGFATGCSTGYLYVRGEYPESEARLRHAIQAA
                     RAAGLLGPDIVGSGVAFDIVLRRGAGAYICGEETALFESIEGKRGEPRNKPPFPVEVG
                     LFGKPTVINNVETLANVPLIVRDGGAAFAAIGTEGSTGPKLFCLSGHVARPGVYETEF
                     GATLRDLIELAGGVPGGRPIKAILLGGAAGVFVGPEALDTPLTFEGTRAIGATLGSGV
                     VMVFDETADLVGTLRRIAQFFRDESCGQCVPCRVGSVRQEELLARLAAGSRVRPREAE
                     LALLRDIGQAMRDASICGLGQTASSAIESALRQPGLVTP"
     gene            945..>1838
                     /locus_tag="VIU37_09250"
     CDS             945..>1838
                     /locus_tag="VIU37_09250"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY6014184.1"
                     /translation="MTDHAARVPDPAGPRPDPAPAPLSSILLNPPARSRRPPAPPPVE
                     APPPVELTIDGAAVTVPAGSTILDACRAQGIDTPTLCYADNLTPVNVCRVCVVEVAGS
                     RVLVPACSRKVEAGMDVHTDSDRVRLSRKVVLEFLGSSVDIGLAGPAAPDGSIAAYAE
                     RYGADATRYGPPAAPARAGERDAHEAGHHHAPAGDGTAATVAQPVKVDNGLYVRDYSR
                     CILCYKCVEACGDDAQNTFAIAIAGRGFDARVSTEFDVPLTDSACVYCGNCIGVCPTG
                     ALMFKREYDLRRAGAWDESRQH"
BASE COUNT          232 a          657 c          691 g          258 t
ORIGIN      
        1 ggcgatccgt tcctgatcgt cgaggcgatg acgatcgcgg ggttcgccac gggctgctcg
       61 accggctacc tctacgtccg cggggagtac ccggaatccg aggctcggct ccgccacgcg
      121 attcaggcgg cgcgggccgc cggcctgctt ggccccgaca tcgtcggctc gggtgtcgcc
      181 ttcgacatcg tcctccggcg tggggccggt gcctacatct gcggcgagga gacggccctg
      241 ttcgagtcga tcgagggcaa gcgcggggag ccgcgcaaca agccgccgtt cccggtcgag
      301 gtcgggctgt tcggcaagcc gaccgtgatc aacaacgtgg agacgctggc caacgtgccg
      361 ctgatcgtgc gcgacggagg cgcggccttc gcggcgatcg ggaccgaggg ctcgaccgga
      421 ccgaagctgt tctgcctgtc ggggcacgtc gcccggccgg gcgtctacga aaccgagttc
      481 ggggcgacgc tgcgcgacct gatcgagctg gccggcggcg tcccgggcgg ccggccgatc
      541 aaggcgatcc tcctcggcgg ggccgcgggc gtgttcgtcg ggcccgaggc cctggatacg
      601 ccgctcacgt tcgaggggac acgggcgatc ggcgcgacgc tcggctccgg agtcgtgatg
      661 gtgttcgacg agacagccga cctggtcggc acgctccgac ggatcgccca gttcttccgc
      721 gacgagtcgt gcggccagtg cgtcccgtgc cgggtgggca gcgtccggca ggaggagctg
      781 ctggcccggc tggcggccgg gtcgcgggtc cgaccgcgcg aggcggagct cgcgctgctg
      841 cgggacatcg gtcaggcgat gcgcgacgcc tcgatctgcg gactgggaca gacggcctcg
      901 tcggcaatcg aatccgcgct ccgccagccc gggctggtga cgccgtgacc gatcacgcgg
      961 ctcgcgtccc ggatccggca gggccgcgac cggatcccgc gccggcgccg ctctcctcga
     1021 tcctgctcaa cccgcccgcc cggtcgcgcc ggccgccggc gccgccgccg gtcgaggcgc
     1081 cgccgcccgt cgagctgacg atcgacggtg ccgccgtgac ggtgccggcc ggctcgacca
     1141 tcctggatgc gtgccgagcg caggggatcg acacgccgac gctgtgctac gcggacaacc
     1201 tgacgccggt caacgtctgc cgcgtgtgcg tggtcgaggt ggcaggctcg cgggtcctcg
     1261 ttccggcgtg ctcgcgcaag gtcgaggccg ggatggacgt ccacaccgat tccgaccggg
     1321 tgcggctgtc gcgcaaggtc gtcctcgagt tcctcgggtc gtcggtcgac atcgggctcg
     1381 ccggtcccgc cgcgccggac ggctcgatcg cggcctacgc cgaacgctac ggcgccgacg
     1441 cgacgcggta cggcccgccg gctgccccgg cgcgcgcggg cgagcgggac gcgcacgagg
     1501 cgggtcacca tcacgccccg gccggcgacg ggacggcggc gaccgtcgcc cagccggtca
     1561 aggtcgacaa cgggctgtac gtcagggact actcgcgctg catcctctgc tacaagtgcg
     1621 tggaggcgtg cggcgacgac gcccagaaca cgttcgcgat cgcgatcgcc gggcgcggct
     1681 tcgacgcccg cgtctcgacc gagttcgacg tgccgctgac cgattcggcc tgcgtctact
     1741 gcggcaactg catcggggtg tgcccgaccg gcgcactgat gttcaagcgc gagtacgacc
     1801 tgcgccgggc cggcgcgtgg gacgagtcgc gccagcac
//
LOCUS       DATDDI010000646         1652 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_284567, whole genome shotgun sequence.
ACCESSION   DATDDI010000646 DATDDI010000000
VERSION     DATDDI010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284567"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VIU37_09255"
     CDS             complement(<1..796)
                     /locus_tag="VIU37_09255"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6014185.1"
                     /translation="MRPTVRARLIRLVGAGALAGSLLLPAAASVSAADPVVIRVGTTQ
                     DVDASNPYQTALVSGYEAFQLTYNLLVDFGANLEPVPGYADSWERAADRVTFHIRTGM
                     KWSDGQPATSADACFSWQLALDAIKDDASIGLGYLDPNLKDAGVTKIECPDDQTLIAY
                     TTDQSDRIFQVYLPIIPKHIWGKYDYKTIADQKFDAPLVGTGPYTLAEWKTGQFMRFV
                     RNPNYWGTQGVADEVVIQIFSSSDTMVQALKSGEIDYVHDINADQLK"
     gene            complement(928..>1652)
                     /locus_tag="VIU37_09260"
     CDS             complement(928..>1652)
                     /locus_tag="VIU37_09260"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014186.1"
                     /translation="KGNPAHRRLARAHGAALRDRTRVTGLRDAGGGDLEVETETGTFR
                     TGRLVIAADAWTNHLLASFGRRLPLQVTREQVTYFACPDPAAFGPDRFPVWIWMDDPS
                     FYGFPTYGEAGPKAAQDCGGRPVDPDRRTFERDEAAFERVTGFLERHLPGAVGPPIYT
                     KTCLYTLTPERDFVVDRLPDQPGVVVALGAGHGFKFASVLGRITAELATAGATPSAPE
                     IEAFRIDRPILLETAPATSWMV"
BASE COUNT          235 a          551 c          602 g          264 t
ORIGIN      
        1 ccttgagctg gtccgcgttg atgtcgtgga cgtagtcgat ctcgcccgac ttgagcgcct
       61 ggaccatggt gtcggagctg ctgaagatct ggatgacgac ctcgtccgcg actccctgcg
      121 tcccccagta gttgggattg cggacgaagc gcatgaactg gccggtcttc cactctgcca
      181 gggtgtacgg gccggttccg acgagcggcg cgtcgaactt ctggtcggcg atggtcttgt
      241 agtcgtactt gccccagatg tgcttcggga tgatcggcag gtagacctgg aagatccggt
      301 cggactggtc ggtcgtgtag gcgatcagcg tctggtcgtc agggcactcg atcttcgtga
      361 ccccggcgtc cttgaggttc gggtcgaggt agccgagccc gatgctcgcg tcgtccttga
      421 tggcgtcgag cgccagctgc cagctgaagc aggcatcggc cgaggtcgcc ggctggccgt
      481 cggaccactt catcccggtc cggatgtgga acgtgacccg gtcggcggcg cgttcccagg
      541 agtcggcgta gcccggaacc ggctccaggt tcgccccgaa gtcgacgagg aggttgtagg
      601 tgagctggaa cgcctcgtag cccgacacga gcgccgtctg gtagggattc gaggcgtcca
      661 cgtcctgcgt cgtcccgacc cggatcacga ccgggtcggc cgccgacacg gaggccgccg
      721 cgggaagcag cagcgaaccg gcgagggcgc ctgcaccaac gagccggatc aatcgagcgc
      781 gcacagtcgg tcgcatcgag tccctcctct ggcggggtcc gcatcctcct cggacctccg
      841 gccttggttc cccgttgagt gggcggtacg ttggcacacg ccgtcgtggc ttgcaaggcg
      901 gggttcgcac ggcgcgtcag cccgcgatca gaccatccac gacgtcgccg gggccgtctc
      961 cagcaggatc ggccggtcga tccggaaggc ctcgatctcc ggggcggacg gggtcgcgcc
     1021 ggcggtcgcc agctcggccg tgatccgccc gaggacggac gcgaacttga acccgtgacc
     1081 ggcccccagg gcgacgacga cgcccggctg gtccggcagc cggtcgacca cgaagtcgcg
     1141 ctccggtgtc agcgtgtaca ggcaggtctt cgtgtagatc ggcggaccga ccgcgccggg
     1201 cagatgccgc tcgaggaagc cggtcacgcg ctcgaacgcc gcctcgtcac gctcgaacgt
     1261 gcgccggtcg gggtcgaccg gccggccgcc gcagtcctgc gcggccttcg gcccggcctc
     1321 gccgtaggtc gggaagccgt agaaggaggg gtcgtccatc cagatccaga cggggaaccg
     1381 gtcgggcccg aacgcggccg ggtccggaca ggcgaagtag gtgacctgct cgcgcgtcac
     1441 ctggagcggc aggcggcgcc cgaacgacgc cagcaggtgg ttcgtccagg cgtcggctgc
     1501 gatgacgagc cgaccggtgc ggaaggtgcc ggtctcggtc tccacctcga ggtctccgcc
     1561 acccgcgtct cgcagtccgg tgacccgcgt acggtcgcgg agcgcggcgc cgtgcgcccg
     1621 ggcgagccgg cggtgggcgg gattcccctt ga
//
LOCUS       DATDDI010000647         2848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_596757, whole genome shotgun sequence.
ACCESSION   DATDDI010000647 DATDDI010000000
VERSION     DATDDI010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596757"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..1837)
                     /locus_tag="VIU37_09265"
     CDS             complement(116..1837)
                     /locus_tag="VIU37_09265"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY6014187.1"
                     /translation="MRRWSELAERLAATPKTSEKTAILADYLRSLSPEELRIATIFLT
                     GRPFAEADQRATGLGWSAIASTVTDLASVGRSALGEAYDRSSDLGIAVADVLSAAGHA
                     PPADRGPTLPEVAAAFAAIETASGPAKKSAILRELLERTDPLTAKHVVKVLGGDLRIG
                     LREGLVEAAIARAFDRPLDAVKQAGMLVGDVGVLAALARDDALASASLSLFHPLKFML
                     ASPAENADEIVARLGPEVWVEDKYDGIRCQLHKLGTDVRLYSRDLHDISTGYPEIVES
                     SRGLDWDGILDGEILAWRDGTVLPFIALQTRLGRKAPTAAIRASVPVIYVAFDALGLG
                     PGAGAPVTPLLGRPLRERRARLDQLDLPLADGDGAGRFARSYLTVAKDADALEAAFLE
                     ARARRNEGLMVKDPASIYAPGRRGLGWLKMKKALATIDCVVVGVEVGHGKRHGVLSDY
                     TFAIRDTATGRLVNIGKAYSGLTDAEIAEMTRWFEAHTIASFGRYRQVEPTVVVEIAF
                     DVIVRSSRHGSGFSLRFPRIARLRPDKTVDEIDTVETVTALYEGLQHGPEHLVTAGAR
                     SSRAPRT"
     gene            1864..2532
                     /locus_tag="VIU37_09270"
     CDS             1864..2532
                     /locus_tag="VIU37_09270"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY6014188.1"
                     /translation="MAPKGWFPETLTGDLVVLRRHVPENVAAFRRWYADPEIARLARY
                     QPSPMRPDEIDRFFEARVVGRDALAMAIHERATDRLIGTCAFSQLDGENGSALYHITI
                     GEADAWGRGYGTEATRLMLDHAFGTLSLHRIGLFVFEFNERAVRAYRRCGFVIEGRSR
                     ESIWRDGRWWDELAMSVLESDWRQIRKATPAGSASDGATTARAEPVGAGTPDRLRRTL
                     ERWR"
     gene            2523..2807
                     /locus_tag="VIU37_09275"
     CDS             2523..2807
                     /locus_tag="VIU37_09275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014189.1"
                     /translation="MAMSTPGAAADAARAEVRELIAAKGHAVDNARAAVARLEAAFAA
                     GDLARTPSMDLFLGDLMRALEQDEGERLGGKSAEAARFILRAIDRELDRA"
BASE COUNT          401 a          983 c         1065 g          399 t
ORIGIN      
        1 gacgaaggcg tccgtcacga gggtgatccc ggtgggcctg gcgtcgcccc cgatcccagc
       61 taacacgggc gaagcatacc cggccgtgtc catccggcgc gacgtgtttc gcggctcacg
      121 tgcgcggcgc cctcgaagat ctggcgcccg cggtcaccag gtgctcggga ccgtgctgca
      181 gcccttcgta cagggcggtc acggtctcga ccgtgtcgat ctcgtccacg gtcttgtccg
      241 gacggagccg ggcgatccgg gggaatcgga gcgagaagcc ggatccgtgg cggctcgacc
      301 ggacgatgac gtcgaaggcg atctcgacca cgaccgtcgg ctcgacctgg cggtagcgcc
      361 caaagctggc aatcgtgtgg gcctcgaacc agcgggtcat ctcggcgatc tccgcgtcgg
      421 tcaggccgga gtaggccttg ccgatgttga ccagccggcc ggtggccgtg tcgcggatcg
      481 cgaacgtgta gtcgctgagc acgccgtggc gcttgccgtg gccgacctcc acgccgacca
      541 cgacgcaatc gatggtggcg agcgccttct tcatcttgag ccagccgagc ccgcgccggc
      601 ccggcgcgta gatgctggcc gggtccttga ccatcaggcc ctcgttccgt cgggcccggg
      661 cttcgaggaa tgcggcctcg agcgcgtcgg cgtccttggc gaccgtgagg tacgaccggg
      721 cgaaccggcc ggcaccgtcg ccgtcggcga gcggcaggtc cagctggtcg agccgggccc
      781 gtcgctcgcg gaggggccgg ccgagcaggg gcgtgaccgg cgcaccggca cccggtccca
      841 gcccgagagc atcgaaggcc acgtagatga ccgggaccga tgcgcgaatc gcggccgtcg
      901 gcgccttccg gcccaggcgc gtctggaggg cgatgaacgg cagcacggtg ccgtcgcgcc
      961 aggccaggat ctcgccgtcg aggatgccat cccagtcgag gccccggctc gattcgacga
     1021 tctccgggta gcccgtgctg atgtcgtgga gatcgcgcga gtagagccgg acgtcggtgc
     1081 ccagcttgtg gagctggcag cggatcccgt cgtacttgtc ctcgacccag acctcgggcc
     1141 cgagccgggc gacgatctcg tccgcgttct cggccggcga cgcgagcatg aacttgagcg
     1201 gatggaagag cgacaggctg gcactggcca gggcgtcgtc acgggcgagc gccgcgagca
     1261 ccccgacgtc gccgacgagc atcccggcct gcttgaccgc gtcgagcggg cgatcgaagg
     1321 cgcgggcgat ggcggcctcg acgagcccct cgcgcagccc gattcgaagg tcaccaccga
     1381 ggaccttgac gacgtgcttc gcggtcagcg ggtccgtacg ctcgagcagc tcccgaagga
     1441 tggccgactt cttggccggg cccgaggcgg tttcgatcgc cgcgaacgcg gcggccacct
     1501 cggggagcgt cgggccccgg tcggccggtg gcgcgtgacc ggcggccgac aggacgtccg
     1561 ccaccgcgat cccgaggtcc gaggagcggt cgtaggcctc gccgagcgcc gatcggccga
     1621 cggaggccag gtcggtcacg gtggaggcga tcgccgacca gccgagcccg gtcgcccgct
     1681 ggtccgcttc ggcgaacggg cgcccggtca ggaagatcgt ggcgatgcgc agctcctcgg
     1741 gcgagagcga ccgaaggtag tcggcgagga tcgccgtctt ctcggacgtc ttgggagtcg
     1801 ccgcgagtcg ctcggccagc tcgctccagc gacgcatggc ggcgatggta taccgtgccg
     1861 gacgtggcac cgaagggctg gtttccggag acgctgacgg gcgacctggt cgtcctgcgc
     1921 cgccacgtgc cggagaacgt tgccgcgttc cggcgctggt acgcggatcc cgagatcgcc
     1981 cggctggcgc gctaccagcc ctcgccgatg cgaccggacg agatcgaccg gttcttcgag
     2041 gcgcgggtgg tcggccgtga cgcgctggcc atggccatcc acgagcgggc gacggaccgg
     2101 ctgatcggga cctgcgcgtt cagccagctc gacggcgaga acggctccgc gctctaccac
     2161 atcacgatcg gcgaggccga cgcctggggc cgcggctacg gtacggaggc gacgcggctg
     2221 atgctcgacc acgcgttcgg gacgctgtcg ctccaccgca tcggcctgtt cgtgttcgag
     2281 ttcaacgagc gcgccgtccg cgcctaccgg cgctgcgggt tcgtcatcga aggccgctcg
     2341 cgcgagtcga tctggcgcga cggccgatgg tgggacgagc tggcgatgag cgtgctcgag
     2401 tcggactggc ggcagattcg gaaggcgacc cctgccggat ccgcgtcgga cggcgcgacg
     2461 acggccaggg ccgagccggt gggcgccggt accccggacc ggctgcgccg gacgctcgag
     2521 cgatggcgat gagcacgccg ggtgccgccg cggatgcggc ccgcgcggag gttcgcgagc
     2581 tgatcgcggc caagggacac gccgtcgaca atgcccgcgc ggcggtcgcc cgcctggagg
     2641 cagcgttcgc ggccggcgac ctcgcccgga cgccgtcgat ggacctcttc ctcggcgatc
     2701 tcatgcgagc cctcgaacag gacgagggcg aacggctcgg cggcaagagc gccgaggccg
     2761 cacggttcat cctgcgcgcc atcgaccggg agctggaccg ggcctgaggc cgggtgagcg
     2821 cgctttagcc gccgatgcct gtcgccct
//
LOCUS       DATDDI010000648         3336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_180518, whole genome shotgun sequence.
ACCESSION   DATDDI010000648 DATDDI010000000
VERSION     DATDDI010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180518"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            359..1825
                     /locus_tag="VIU37_09280"
     CDS             359..1825
                     /locus_tag="VIU37_09280"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY6014190.1"
                     /translation="MKTFSNFAVSFTIISILSGCLTLFGFGMKTGGPAEMVWGWLVVG
                     FFVTLVALGMAEVASSYPTAGGLYYWSAKLAKGNAPAWSWFTGWFNLLGQVAVTAGID
                     FGLAFFINAFLNIAFGVGTDPWITIVIYGVVLALHALLNTFGIRIVALLNDVSVWWHI
                     VGVAIIFISMFFLTPNHSDLGTVFTSFVNRTSADGVAPLLPAFYVALIGLLNAQYTLT
                     GYDASAHMSEETHDAHISAPRGIVFSVVVSVIAGFILLVAMNYGIDPNGGYDRALGAL
                     VPPAQIWIDALGQTGGLFILLIVIGAQFYCGMSSVTANSRMIYAFARDGAIPGSRFWH
                     RINPSTRTPTNSIWLAAVGAFILGLPYLFNAVAYAAVTSIAVIGLYIAYITPVFLRLR
                     AGDSFQAGPWNLGRWSRPIGTVATIWVVFIAILFLLPQVNPINASTFNYAPVAVGAVI
                     LFAGGWWVLSAKNWFKGPKVQGSPEELAAIERELELEA"
     gene            complement(1884..2663)
                     /locus_tag="VIU37_09285"
     CDS             complement(1884..2663)
                     /locus_tag="VIU37_09285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014191.1"
                     /translation="MATTPAWDRAAAIVPADGRRRPEIAALPPGLPTVSQLFDFMRDA
                     ELRFATLRLRVEERANTSWGEETVTSEVVLRHPGHAKVTTTREAHRGKADYEIWISDG
                     DLVRTYAAAHRLGTQRPVRNRPRGLHDRDFPASSRVYEPVTALPMETLPETFVHPAGY
                     CQNVLATGRCTVLGAEVIGGREAIVLQCDHPRTTEMVGDRPDFRIVIAADRETGVILR
                     LVESIGGSTTREAQVTEIAPDAPLAPSAFQFVFPTGTTMLY"
     gene            complement(2738..>3336)
                     /locus_tag="VIU37_09290"
     CDS             complement(2738..>3336)
                     /locus_tag="VIU37_09290"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY6014192.1"
                     /translation="LDAVIAAHGGIRAVALGLWKIASDVRLMGMGPRAGIGELALPET
                     QPGSSIMPGKVNPVIVESLTMVVARVIGNDATVAFGQTGSLLELNVMLPVTAVSILES
                     ISLLAASARNFRLRLVEGVTATDRGPHLVEQGLMLATALAPVIGYDEAAKLAKAALAS
                     GRTIRELALERGMDPGELDRLLDPAAMTEPGLGAGGGG"
BASE COUNT          480 a         1153 c         1142 g          561 t
ORIGIN      
        1 accctggcgc cttcctcggc gaatcggatc gccgtggccc ggccgatccc cgatcccgct
       61 ccggtgacga tgctgacctt gcccgccaat cgatccgcca cgacgccgcc ctccaacgtg
      121 ttgctcctgc cgacatccat cttgacactc acccgaggcc acatatcgtt gcgcgcttaa
      181 ggatccgggt cgccggcgga accgcgggca gggtggcgat gtcccggcgg aagaccgcag
      241 tcttcgcgtc cacgcgtacg agcatcaatg gtcgaaacgt tgatggagga acgaagtggc
      301 aggaagcgac accgaacgac tgcaccagct cgggtacgcc caggagctgc ggagagggat
      361 gaagaccttc tccaacttcg cggtctcgtt cacgatcatc tcgatcctgt cggggtgcct
      421 gaccctgttc ggcttcggga tgaagaccgg cgggcccgcg gagatggtct ggggctggct
      481 cgtcgtcggg ttcttcgtga cgctcgtcgc gctcggcatg gcggaggtcg catcgagcta
      541 cccgaccgcc ggcggcctgt actactggtc ggcgaagctg gcaaagggca acgcgccggc
      601 ctggtcgtgg ttcaccggct ggttcaacct gctcggccag gtggccgtca ccgccggcat
      661 cgacttcggc ctggcgttct tcatcaacgc gttcctcaac atcgccttcg gggtcggcac
      721 cgacccatgg atcacgatcg tgatctacgg cgtggtgctc gccctccatg cgctgctcaa
      781 cacgttcggg atccggatcg tcgcgttgct caatgacgtg tccgtgtggt ggcacatcgt
      841 gggcgtggcg atcatcttca tcagcatgtt cttcctgacg cccaaccatt cggacctcgg
      901 gacggtgttc acgagcttcg tcaaccggac gagcgccgac ggcgtggcgc cgctgctccc
      961 cgccttctac gtggcgctga tcgggttgct caatgcgcag tacacgctga ctggctacga
     1021 cgcctcggcg cacatgtccg aggagaccca cgacgcgcac atctccgcac cgcgcggcat
     1081 cgtcttctcg gtggtcgtgt cggtcatcgc cggcttcatc ctgctggttg cgatgaacta
     1141 cggcatcgat ccgaacggcg gctatgaccg tgcgctcggc gcgctcgtcc cgccggccca
     1201 gatctggatc gacgcgctcg gccagacggg tggcctgttc atcctcctga tcgtcatcgg
     1261 cgcgcagttc tactgcggca tgtcgtcggt cacggccaac tcccggatga tctatgcatt
     1321 cgctcgcgac ggcgcgatcc ccggcagccg cttctggcac cggatcaacc cgtcgacccg
     1381 gaccccgacg aactcgatct ggctggcggc cgtcggtgcg ttcatcctgg ggctgccgta
     1441 cctgttcaat gccgtcgcct acgcggcggt gacctcgatc gccgtgatcg ggctgtacat
     1501 cgcgtacatc accccggtct tcctgcggct ccgggcgggc gacagcttcc aggccggccc
     1561 gtggaacctc ggtcgctgga gccggccgat cgggacggtg gcgacgatct gggtcgtgtt
     1621 catcgcgatc ctgttcctgc tcccgcaggt caacccgatc aacgcctcga cgttcaacta
     1681 cgccccggtc gccgtgggcg ccgtcatcct gttcgccggc ggctggtggg tgctgtcggc
     1741 caagaactgg ttcaaggggc ccaaggtcca gggttcgccc gaggagctgg ccgccatcga
     1801 acgcgagctg gagctcgaag cctgagcgtt cgcaaccccg cgaacacgct cgaagcccgg
     1861 cggagcccgc cgggcttcgg gattcagtag agcatcgtcg tcccggtggg gaagacgaac
     1921 tggaacgcgc tcggcgcgag cggggcgtcg ggcgcgatct cggtcacctg cgcttctcgc
     1981 gtcgtggatc cgccgatcga ttcgaccagg cggaggatca ctccggtctc gcggtcggcg
     2041 gcgatcacga tccggaagtc cggccggtcg ccgaccatct cggtcgtccg cgggtggtcg
     2101 cactggagga cgatcgcctc gcggccgccg atgacttcgg cgccgaggac ggtgcagcgg
     2161 ccggtcgcca gcacgttctg gcagtagccg gccggatgga cgaaggtctc ggggagcgtc
     2221 tccatcggca gcgcggtgac cggctcgtag acccgcgagg acgcggggaa atcgcggtcg
     2281 tggaggcccc gcgggcggtt ccggaccggg cgctgcgtgc cgagcctgtg cgcggccgcg
     2341 taggtccgga cgagatcgcc gtcggagatc cagatctcgt agtcggcctt gccgcgatgg
     2401 gcctcgcggg tggtcgtcac cttggcgtgc ccgggatggc ggagcacgac ctccgaggtg
     2461 acggtctcct cgccccatga cgtgttggcg cgttcttcca cgcggagccg gagcgtggcg
     2521 aaccgcagct cggcgtcgcg catgaagtcg aacagctggg agacggtcgg gagcccgggc
     2581 gggagcgccg cgatctcggg acggcgacgg ccgtcggccg gaacgatggc ggcggcgcga
     2641 tcccaggctg gtgtggtggc cattggcgcg gattgtagcg ggcgacgccc gatggtcgcg
     2701 gggccgaacc ggccggcgcc gctcacggga acgaggacta cccgccgcct ccggctccga
     2761 gacccggctc ggtcatggcc gccgggtcca gcaggcgatc gagctccccg ggatccatgc
     2821 cgcgctcgag cgccagctcg cggatcgttc gcccggacgc gagcgcggcc ttcgccagct
     2881 tggccgcctc gtcgtagccg atcaccggcg ccagggctgt cgcgagcatc agcccctgct
     2941 cgacgaggtg cggcccgcga tcggtcgccg tcacgccctc cacgaggcgg agccggaagt
     3001 tgcgtgccga ggccgccagc agcgagatcg attcgaggat cgagaccgcc gtgacgggga
     3061 gcatcacgtt gagctcgagc aggcttcccg tctggccgaa cgcgaccgtc gcgtcgttgc
     3121 cgatcacgcg cgccacgacc atggtcagcg actcgacgat caccgggttg accttgccgg
     3181 gcatgatcga cgagcccggc tgcgtctccg gcaacgccag ctcaccgatc ccggcccgcg
     3241 ggcccatgcc catcagccgc acgtccgagg cgatcttcca caggccgagc gcgacggccc
     3301 ggatcccgcc gtgcgcggcg atcaccgcgt cgagcg
//
LOCUS       DATDDI010000649         2874 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_284627, whole genome shotgun sequence.
ACCESSION   DATDDI010000649 DATDDI010000000
VERSION     DATDDI010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284627"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VIU37_09295"
     CDS             complement(<1..288)
                     /locus_tag="VIU37_09295"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY6014193.1"
                     /translation="MPGDRPAPSFGTVRYEVADGVATITLDRPEALNALTVGVKADLL
                     GAFRAVDRDRDVRAVVLTGAGRAFCAGQDLKERLEPGAAPLAVELRERYNPL"
     gene            complement(288..1091)
                     /locus_tag="VIU37_09300"
     CDS             complement(288..1091)
                     /locus_tag="VIU37_09300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014194.1"
                     /translation="MELDLPGGSDVGRDLERDLGEVPPATLRDTPPDYLSPIDASAPV
                     SGHVAPAEPTTAVADSPEHDWELARTLIYPAFRPVGTLGLAIETIDRGTLAAHATQSH
                     AQPLLGQGPAGLPLVYTIAAGGFDIVVNGDHLLTWGVEPGEIPEAAMRNLATWSAKAP
                     WSSEESGSRHLISSQTGEGFDAVRILLPDAVAHLVGVLGPFGRILVGIPERHLLIAGS
                     MRPGDDDFATLFATFVVEQSGGADEPIDRRVFELRDGRLIDFDGPVAAA"
     gene            complement(1119..1985)
                     /locus_tag="VIU37_09305"
     CDS             complement(1119..1985)
                     /locus_tag="VIU37_09305"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY6014195.1"
                     /translation="MTNAPVQRDSPVEASRSHARDLVRVAYPAPAPASIGSQGVLEGV
                     ALVTLDRREALNALSYELVEALASALEALDADPAARAVVITGEGSRAFAAGADIRELS
                     AETYASLRDGRKFDPWDRVWAVGLPLIAAVRGVALGGGCELAMSCDMIVAAEDATFGQ
                     PEIRLGVMPGAGGTQRLTRAIGKAKAMELILTGRSIGAPEAERLGLVTTVVPPGATLD
                     AALELAARIAAMPPLAVRAAVAAIRAADERALSDGLARERDAFFRLFDTRDQAEGMAA
                     FVEKRSPTWTGR"
     gene            complement(1982..2359)
                     /locus_tag="VIU37_09310"
     CDS             complement(1982..2359)
                     /locus_tag="VIU37_09310"
                     /inference="COORDINATES: protein motif:HMM:TIGR02118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EthD family reductase"
                     /protein_id="HEY6014196.1"
                     /translation="MTTLLALYRRPDGGSDAEATFERRYTGEHLPLVGQTPGLRETRI
                     WRVTEALGAETDLILVAAMRFDDRAALDAGLASDPMRRAGRVLREIAPGLATLLVLED
                     VPEMIAAASQPVDTVGSAVEDRP"
     gene            complement(2373..>2874)
                     /locus_tag="VIU37_09315"
     CDS             complement(2373..>2874)
                     /locus_tag="VIU37_09315"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6014197.1"
                     /translation="RAHLLGFSMGAMTALTFAVRYPARVRSLVVAGLSPLREPRASVA
                     RRLMDPDRIERTDPGWAAALARRHDPVQGPGAWRRLLPAIAEDVAVQPLLSPAELHSI
                     EGPALVACGDGDPFAPVDQALGLARQLRGGHLLVVPDCGHDLMARRPRLVNEALLAFY
                     RSIPSL"
BASE COUNT          404 a         1052 c         1062 g          356 t
ORIGIN      
        1 cagcgggttg tagcgctccc ggagctcgac ggcgagcggc gcggcgcccg gttcaaggcg
       61 ctccttgagg tcctgcccgg cgcagaacgc gcggccggcg ccggtcagca cgacggcgcg
      121 aacgtcccgg tcgcgatcga cggcacggaa cgccccgagc aggtccgcct tgacaccgac
      181 ggtcagcgcg ttgagcgcct cggggcggtc gagggtgatc gtcgcgacgc catcggcgac
      241 ctcgtagcga acggtcccga acgagggcgc cggtcgatcg ccgggcatca ggcggcggcg
      301 acgggaccgt cgaagtcgat caggcgtccg tccctgagct cgaacacgcg gcgatcgatc
      361 ggctcgtccg cgccgccgga ctgctccacg acgaacgtgg cgaagagcgt ggcgaagtcg
      421 tcgtcgcctg gccgcatcga gcccgcgatc agcaggtggc gttcggggat cccgaccagg
      481 atccgtccga atggcccgag cacgccgacg aggtgcgcga ccgcgtccgg caggaggatc
      541 cggaccgcat cgaatccctc gccggtctgc gagctgatca ggtgacgact gcccgattcc
      601 tcgctcgacc acggcgcctt cgccgaccag gtcgcgaggt tgcgcatcgc cgcctccggg
      661 atctccccag gctccacgcc ccaggtcagg aggtggtcgc cgttgacgac gatgtcgaag
      721 ccgcccgcgg cgatcgtgta gacgagcggg agtccggcag gcccctggcc gagcagtggc
      781 tgcgcgtggc tctgcgtggc gtgggcggcg agcgtccccc ggtcgatggt ctcgatcgcc
      841 aggccgagcg tcccgaccgg ccggaacgcc gggtagatca gcgtccgggc gagctcccag
      901 tcgtgctcgg gcgaatcggc caccgccgtc gtcggctcgg cgggggcgac atggccgctg
      961 accggggcgg acgcgtcgat cgggctcagg tagtcgggcg gcgtgtcacg cagcgtcgcg
     1021 ggcggcacct cgccgaggtc gcgctcgaga tcgcgcccga cgtcgctgcc accaggcagg
     1081 tccagctcca tgtgtcctct cctcccagcc tgatcctgtc agcgacccgt ccaggtcggt
     1141 gagcgtttct cgacgaaggc ggccatcccc tccgcctgat cgcgggtgtc gaacaaccgg
     1201 aagaacgcgt cgcgctcgcg ggcaaggccg tccgacagcg cgcgctcgtc ggcggcccgg
     1261 atggcggcca ccgcggcgcg aacggccagc ggcggcatcg cggcgatccg ggcggccagc
     1321 tcgagcgcgg cgtccagcgt cgccccgggg ggcaccacgg tcgtcaccag cccgagccgc
     1381 tcggcctccg gcgccccgat cgaacggccg gtcaggatca gctccatcgc cttggccttg
     1441 ccgatcgcgc gggtgagccg ttgcgtgcca cccgcaccgg gcatcacccc gagccggatc
     1501 tccggttgcc cgaacgtcgc gtcctcggcg gcaacgatca tgtcgcagct catcgccagc
     1561 tcgcagccac cgccgagcgc caccccgcgg accgcggcga tgagcggcag gcccacggcc
     1621 cagacgcgat cccacgggtc gaacttgcgg ccgtcgcgga gcgacgcgta ggtctcggcc
     1681 gacagctcgc ggatgtcggc cccggcggcg aacgcccggc tcccctcccc cgtgatgacg
     1741 acggcacgcg ccgccggatc cgcatcgagg gcttcgaggg ccgacgcgag cgcctcaacc
     1801 agttcgtagc tgagggcgtt cagcgcctcg cgacgatcca gggtgaccag cgccacgccc
     1861 tccaggacgc cctggctccc gatggaggcc ggcgcggggg ccggataggc gacacgcacg
     1921 aggtcgcgcg cgtgcgaccg cgaggcctcg accggcgaat cgcgctgcac tggggcgttg
     1981 gtcacggacg atcctcgact gcgctcccga cagtatccac gggttgggaa gccgcggcga
     2041 tcatttccgg cacgtcctcg agcacgagca gcgtcgccag tcccggcgcg atctcgcgca
     2101 gcactcggcc ggcccggcgc attgggtcgg aggccaggcc cgcgtccagt gcggcacggt
     2161 cgtcgaagcg catcgccgcc accaggatca ggtcggtctc ggctccgagc gcctcggtca
     2221 cgcgccagat ccgcgtctcg cgaaggccgg gcgtctggcc gacgagcggc aggtgctcgc
     2281 cggtgtagcg acgctcgaag gtcgcctcgg cgtcggatcc gccgtccggc cggcggtaca
     2341 gggcgaggag cgtggtcatg cgggcacctc cgtcagagcg atgggatcga gcgatagaag
     2401 gcgagcagcg cctcgttcac gagccgcggc cgccgggcca tcaggtcgtg gccgcaatcc
     2461 ggcacgacta gcaggtgacc gccgcggagc tggcgcgcca ggcccagggc ctggtcgacc
     2521 ggcgcgaacg ggtcgccgtc gccacaggcg acgagggcgg ggccctcgat cgaatgcagc
     2581 tcagccggcg acagcagtgg ctggaccgcg acgtcctcgg cgatcgcggg caggagccgt
     2641 cgccaggcgc cggggccctg caccggatcg tggcgtcggg cgagcgcggc ggcccaaccc
     2701 gggtcggtcc gctcgatccg atccgggtcc atcagccgcc gggcgacgct ggcccgcggc
     2761 tcccggagcg gcgagaggcc ggccacgacc aggctccgga cgcgtgccgg gtaccggacg
     2821 gcgaacgtga gcgcggtcat cgcgcccatc gagaacccga gcaggtgggc gcgc
//
LOCUS       DATDDI010000650         3625 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_97276, whole genome shotgun sequence.
ACCESSION   DATDDI010000650 DATDDI010000000
VERSION     DATDDI010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97276"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1001
                     /gene="purD"
                     /locus_tag="VIU37_09320"
     CDS             <1..1001
                     /gene="purD"
                     /locus_tag="VIU37_09320"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEY6014198.1"
                     /translation="AFCHEVAAAAGVPMARAASFRDPGAARRFAAELAAGGGGVVVKA
                     DGLAAGKGVTVCDALSEADAAIERLFAAAPGGTVVIEERLSGPEASLIAICDGRDAVA
                     LPLSRDHKRLGDGDSGPNTGGMGAYSPLPDLPDERIGLLLDTFHRPILAELARRGTPF
                     RGTLYAGLILTQDGPVVLEYNARFGDPETQATLPRLAIALGPALLAAARGDLRAVLPA
                     AVMTDGRLPELPGAAVAVVLAAAGYPADPRAGDRIEGLDQAAATGALVFHAGTSLDAD
                     GTVRTAGGRVLSVVARAADLAAATTAAGAAAELVRAPGLQHRRDIGTAAIAALANR"
     gene            1015..2367
                     /gene="purB"
                     /locus_tag="VIU37_09325"
     CDS             1015..2367
                     /gene="purB"
                     /locus_tag="VIU37_09325"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEY6014199.1"
                     /translation="MIRRYTLPEMGAIWSDAARFEAMLRVELAVARAEASRGLIPPDV
                     PATLESRARIDVDRIAEIEKTTDHDVIAFVSQVAETVGPDGRFLHFGLTSSDVVDTGL
                     AIQLRAAGQRLLVDVDRLLATIIGRARAEAGTVMMGRTHSVHAEPTTLGLKLAGWAFE
                     LDRGRVRLAAAVDEIATGKISGPVGTYSHLAPDVEAEVLAALELRVDPASSQIVQRDR
                     HAALLVAMAVLGGSLERFATEVRNLQHTEIGELQEPFKAGQKGSSAMPHKRNPILSER
                     IAGLARLLRGYAQTALEDQPLWHERDISHSSAERVILPDATIVLDYMLVKMTGLIDGL
                     IVRPERMRDNIDRGLGLHASSRVLSALLEAGLAREEAYAVVQRAALRAADDRQPLREL
                     LAVDALVAQRLSLAQLDACFDDARYLAHAPVVIARLDALAEALAARQGTATMAVSNAG
                     "
     gene            2357..3421
                     /locus_tag="VIU37_09330"
     CDS             2357..3421
                     /locus_tag="VIU37_09330"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF013428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEY6014200.1"
                     /translation="MLADAFLRSGKVRDLHLLNDGRLLLVASDRISAFDVVLPTTIPD
                     KGRVLTALSRFWFAETSSIIANHLLDTDPAIVAGYVASETRRGGYELTDPGPMDELRG
                     RIMLCRPANVVPIEAVVRGYLAGSGWKEYRERGTVCGVPLPAGLQESDQLPEPIFTPA
                     TKAEQGEHDQNVSFDGMIEHIATGPLLTKETAGPVAESIRDRAVRLYRYGAAVAARKG
                     ILLADTKFEFGLAGTPLAPADPGPPEEWLGPPDRRPPGESFPLPLEDHLILIDEVMTP
                     DSSRFWDAATYAPGRAQASFDKQFVRDWLEAQPWDKTAPGPALPPDVVDGTRSRYVEA
                     YERITGASFERYLREDVIAS"
     gene            3418..>3625
                     /locus_tag="VIU37_09335"
     CDS             3418..>3625
                     /locus_tag="VIU37_09335"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF014726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEY6014201.1"
                     /translation="MTSFRFAVNVTPKPGILDPQGRAVEGSLGHLDISGVGAVRVGRR
                     VELTVDAVDDAAARDVVDRLARELL"
BASE COUNT          491 a         1320 c         1315 g          499 t
ORIGIN      
        1 aggcgttctg tcacgaggtc gcggccgccg cgggcgtccc gatggcgcgg gccgcctcgt
       61 tccgcgatcc cggtgccgct cggcggttcg ccgcggagct ggctgccggc ggtgggggcg
      121 tggtcgtgaa ggccgacggg ctggccgccg gcaagggcgt cacggtctgc gacgcgctct
      181 ccgaggccga cgccgcgatc gagcgcctgt tcgcggcggc gccgggcggc acggtcgtca
      241 tcgaggagcg actgtccggg cccgaggcga gcctgatcgc gatctgcgat ggtcgggacg
      301 ccgtggccct gcccctgtcc cgcgaccaca agcgcctcgg cgacggcgac agcggcccga
      361 acaccggcgg gatgggcgcc tacagcccgt tgccggacct cccggacgaa cggatcgggt
      421 tgctcctcga caccttccac cggccgatcc tggccgagct ggcgcgccga ggcacgccct
      481 tccgcggcac cctctacgcg ggcctcatcc tcacccagga cggcccggtc gtgctcgagt
      541 acaacgcgcg gttcggcgac ccggagacgc aggccaccct gccacggctg gcgatcgcgc
      601 tcggcccggc gctgctcgca gcggcccgcg gcgatctccg cgcggtgctt cctgcggcgg
      661 tcatgaccga cggtcggctg cccgagctgc ccggggccgc ggtggcggtc gtgctcgcgg
      721 cggccggcta tccggccgat cctcgagccg gcgaccggat cgaggggctc gaccaggccg
      781 ccgccacggg tgcgctcgtg ttccatgccg ggacgtccct ggatgccgac ggcaccgtgc
      841 ggaccgccgg cggccgcgtc ctgtcggtcg tggctcgcgc cgcggacctc gcggccgcca
      901 cgaccgcggc cggtgccgcc gccgagctgg tccgcgcgcc cgggctccag catcgtcgcg
      961 acatcgggac ggcggcgatc gccgcgctgg cgaaccgatg aacggagcgc gcgaatgatc
     1021 cggcggtaca ccctgccgga gatgggcgcg atctggtcgg acgcggcccg gttcgaggcc
     1081 atgctccggg tcgagctcgc ggtcgcccgg gcggaggcgt cgcgagggct gatcccgccc
     1141 gatgtcccgg cgacgctcga gtcacgcgcc cggatcgacg tcgaccggat cgccgagatc
     1201 gagaagacga ccgatcacga cgtcatcgcc ttcgtcagcc aggtcgccga gacggtcggg
     1261 cccgacggcc ggttcctgca cttcggcctg accagcagcg acgtcgtcga cacgggcctg
     1321 gcgatccagc tgcgggcggc cggccagcgc ctgctggtcg acgtggaccg cctcctcgcg
     1381 acgatcatcg gtcgcgcccg ggccgaggcc ggtacggtga tgatgggccg gacgcactcg
     1441 gtccacgccg agccgacgac gctcggcctc aagctggcgg gctgggcctt cgagctcgat
     1501 cgcggccgtg tccggctggc cgcggcggtc gacgagatcg cgaccggcaa gatctcgggg
     1561 ccggtcggaa cgtacagcca cctcgcgccg gacgtggagg ccgaggtgct cgcggcgctc
     1621 gagctgcgcg tggaccccgc cagcagccag attgtccagc gggaccggca cgcggccctg
     1681 ctggtcgcga tggccgtcct gggcggatcg ctggagcggt tcgccacgga ggtccgcaac
     1741 ctccagcaca cggagatcgg cgagctccag gagccgttca aggcgggcca gaagggctcg
     1801 tcggcgatgc cccacaagcg caacccgatc ctgtcggaac ggatcgccgg cctggcgagg
     1861 ctgctccgcg gctacgcgca gaccgcgctc gaggaccagc cgctatggca cgagcgcgac
     1921 atcagccaca gcagcgccga gcgggtcatc ctgcccgacg cgacgatcgt cctcgactac
     1981 atgctcgtga agatgaccgg actgatcgac gggctgatcg ttcgccccga gcggatgcgc
     2041 gacaacatcg accgcgggct cggcctgcac gcttcgtcgc gggtgctgag cgccctgctc
     2101 gaggcaggcc tcgcccggga ggaggcatac gccgtcgtcc agcgggccgc gttgcgagcc
     2161 gcggacgacc gccagccgct gcgcgagctg ctggccgtcg acgccctggt ggcccagcgg
     2221 ctgtcgctcg cccagctcga cgcctgtttc gacgacgcga ggtatctcgc ccatgcaccg
     2281 gtcgtgatcg cccggctcga cgccctggcc gaagccctgg ccgcgcggca ggggacggcc
     2341 accatggcgg tgtccaatgc tggctgacgc gttcctccga tccggcaagg tccgcgacct
     2401 gcacctgctc aatgacgggc gactgctgct cgtcgcgtcg gaccggatct ccgccttcga
     2461 cgtggtcctg ccgacgacga tccccgacaa ggggcgggtg ctcaccgcgt tgtcgcggtt
     2521 ctggttcgcg gagacgagct cgatcatcgc gaaccacctc ctcgacacgg accccgcgat
     2581 cgtcgccgga tacgtggcgt ccgaaacgcg acgcggaggg tacgagctga ccgaccccgg
     2641 accgatggac gaactccgtg gccggatcat gctgtgccgg ccggcgaacg tggtgccgat
     2701 cgaggcggtg gtccggggtt atctcgccgg ctcgggttgg aaggaatacc gggagcgagg
     2761 caccgtctgc ggcgtcccgt tgccggccgg actgcaggag agcgaccagc ttccggagcc
     2821 gatcttcacc ccggcgacca aggccgagca gggcgagcac gatcagaacg tcagcttcga
     2881 cggcatgatc gagcacatcg cgaccggtcc gctcctgacg aaggagacgg ccggtccggt
     2941 ggccgagtcg atccgggatc gggccgtccg gctctatcgg tatggcgcgg cggttgccgc
     3001 ccggaagggc atcctcctcg cggacacgaa gttcgaattc ggattggcgg ggacgccctt
     3061 ggccccggcc gaccccggac cccctgagga gtggctcggt ccgccggatc gccggccacc
     3121 gggcgagtcc ttcccgctgc cgctcgagga ccacctgatc ctgatcgacg aggtcatgac
     3181 ccccgattcc tcgcgcttct gggacgccgc gacctatgcc cctggccgcg cccaggcgag
     3241 cttcgacaag cagttcgtgc gcgactggct cgaggcccag ccctgggaca agaccgcgcc
     3301 gggtcccgcg ctgccgcccg acgtcgtcga cgggacgcgc tcgcgctacg tcgaggccta
     3361 cgagcggatc accggcgcca gcttcgagcg gtacctcagg gaggacgtga tcgcctcatg
     3421 accagcttcc ggttcgcggt caacgtgaca ccaaagcccg gcatcctcga cccgcagggg
     3481 agggcggtgg aagggagcct gggccacctc gacatctccg gcgtgggcgc cgtccgtgtc
     3541 ggccgccgcg tcgagctcac ggtcgatgcc gtggacgatg ccgcggcgcg cgacgtggtc
     3601 gaccggctcg cgcgcgagct cctgt
//
LOCUS       DATDDI010000651         3144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_659099, whole genome shotgun sequence.
ACCESSION   DATDDI010000651 DATDDI010000000
VERSION     DATDDI010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659099"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..668)
                     /locus_tag="VIU37_09340"
     CDS             complement(105..668)
                     /locus_tag="VIU37_09340"
                     /inference="COORDINATES: protein motif:HMM:NF016955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerB family tellurite resistance protein"
                     /protein_id="HEY6014202.1"
                     /translation="MFRRFLGPAPSAPSPVTRTDTGGAAGETATVRRIVARLEAMPPE
                     RARFIASAAYTLARAANADLDISDDETAAIERELQAHDGLDEPTAVLVTQMAKLQAKT
                     IGGAEDYSVTREFKALASMDQRIDVLRACFAIGAANGTISAEENAMVNQIARELDVED
                     ATVNAIRAEYHEQLSAVQRIRRVTDGG"
     gene            complement(728..1186)
                     /locus_tag="VIU37_09345"
     CDS             complement(728..1186)
                     /locus_tag="VIU37_09345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014203.1"
                     /translation="MPSSRHERRRSVGYPTGRLMAVIDDPAAAAGAMAELVAAGIAPD
                     DLELLRGAEGADRVDGTGGGGGPAGRLRRAIDFTLMDQLVDFVAYERALRDGRAVVLV
                     RARDDPRKAAAVAVLRGRGGHFVNYFGRFATEEIDPWRGPEPEIADFLRR"
     gene            complement(1196..2329)
                     /locus_tag="VIU37_09350"
     CDS             complement(1196..2329)
                     /locus_tag="VIU37_09350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014204.1"
                     /translation="MALSRAARKTVILALAAASLAIPSGLGVGGVAAAPAGPMAIQFW
                     SSPSEAYLTRPFDVRVAIVDSLQYPQSIVTTGTSATISLAIDTRTDPLGTLACASGLS
                     VPTATAGTSAGLATFTGCTFDRVGTFGLVASATNVVSTTVPTPVFADARAPFIHVGTA
                     IEAPQDTIKLGIAHDGSSPYFTWGQTVTIRVTFTVHGANQPFQLQQTTRAMTDWVPLA
                     NLVTDAGGVATYSYRPSVSTHYRVVYAGSPDLAAGTSERKGFLLFALARQSPANATPR
                     VIRRGTSVTFATTVRPLLPELAPARVSFAISHRVSGKWKVVAWRYATVDSSGVARVTI
                     KFGGPGEWYVRSTAQPRWSGEPEAAPAVAWTSRPTPIARFSVR"
     gene            complement(2493..2578)
                     /locus_tag="VIU37_09355"
     tRNA            complement(2493..2578)
                     /locus_tag="VIU37_09355"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2543..2545),aa:Leu,seq:caa)
     gene            2689..>3144
                     /locus_tag="VIU37_09360"
     CDS             2689..>3144
                     /locus_tag="VIU37_09360"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6014205.1"
                     /translation="MEDLRSTTVTDDPVQRRDLILLERAREGDLGAFNDLVSLYQDQL
                     FALVVRMVPDRDQASDAVQEAFFSAFRHLDSFRGGSVKSWLNRICVNAAMDTQRARKR
                     RPVQPYPEFDDESWQPPAGAEADPERTAMLAERTRALSTALAGITDDQRA"
BASE COUNT          453 a         1096 c         1139 g          456 t
ORIGIN      
        1 gcctacgacg cggagttgct cgccgaggtg cggcgccgct tcggggacgg cctggtcgag
       61 ctccagctcg gctgaaggcg gctcggcggc tcggcgtccg gtggtcagcc gccgtcggtg
      121 acgcgacgga tccgctggac ggccgagagc tgctcgtgat actcggcgcg gatcgcgttg
      181 accgtggcgt cctcgacgtc gagctcgcgg gcgatctggt tgaccatcgc gttctcttcg
      241 gcggagatcg tgccgttggc cgcgccgatc gcgaagcagg cacgcagaac gtcgatccgc
      301 tggtccatgc tggccagggc cttgaactcg cgagtgacgc tgtagtcctc ggcgccaccg
      361 atcgtcttgg cctggagctt ggccatctgg gtcacgagca cggcggtcgg ctcgtccagc
      421 ccgtcgtgag cctgcagctc gcgctcgatc gcggcggtct cgtcgtcgct gatatccagg
      481 tcggcgttcg cggcccgggc gagcgtatac gcggccgacg cgatgaaccg ggcccgctcg
      541 ggcggcatcg cctccagcct ggcgacgatg cgacggacgg tggcggtctc gccggcggcg
      601 ccgcccgtgt cggtcctcgt gacgggtgac ggggcggacg gcgcaggccc aaggaagcgg
      661 cggaacatgc ggaactcctt cgaagaccgt ggggcccgca gatcatgcca ccgtggcgcc
      721 gaaccgttca gcggcgcagg aagtccgcga tctccggctc cgggccccgc cacggatcga
      781 tctcctcggt ggcgaaccgt ccgaagtagt tgacgaaatg gccaccccgt ccgcggagca
      841 ccgccaccgc ggccgccttc cttgggtcgt cgcgagcgcg gacgagcacc acggcccggc
      901 cgtcgcgcaa cgcccgctcg taggccacga agtcgaccag ctggtccatc agcgtgaagt
      961 cgatcgcgcg acggagacgg ccagccgggc ccccgcctcc gccggtgccg tcgacccggt
     1021 cggcgccctc ggcaccgcgc aggagctcga ggtcatcggg ggcgatcccc gcggcgacca
     1081 gctcggccat cgcgcccgcc gccgcggccg ggtcgtcgat cacggccatg agccggcccg
     1141 tcggatagcc gacggatcga cggcgctcgt ggcgggagga tggcataccc gaaccctagc
     1201 gaacgctgaa ccgggcgatc ggcgtcgggc ggctggtcca cgcgacggcg ggcgccgctt
     1261 ccggttcgcc ggaccacctc ggttgtgcgg tcgagcgcac gtaccactca cccggaccac
     1321 cgaacttgat ggtcacccgg gcgacgccgc tcgaatccac cgtggcatag cgccaggcga
     1381 cgaccttcca cttgcccgag acgcgatggg agatcgcgaa ggagacccgg gcgggcgcca
     1441 gctcgggcag cagcggtcgg accgtcgtcg cgaacgtgac cgaggtccct cgccggatca
     1501 cccgcggcgt cgcgttggcc ggcgactgcc tggcgagggc gaagagcaag aagcctttcc
     1561 gctcgctggt gcccgcggcg agatccggac tgcccgcgta gaccacgcgg tagtgggtcg
     1621 agacgctcgg ccggtacgag taggtcgcga ccccgccggc gtcggtcacg aggttcgcga
     1681 gcggcaccca gtcggtcatc gcccgggtcg tctgctggag ctggaatggc tggttcgccc
     1741 cgtggacggt gaaggtcacc cggatcgtca cggtctggcc ccaggtgaag tagggcgagc
     1801 tgccgtcatg cgcgatgccg agcttgatcg tgtcctgcgg agcctcgatc gccgttccga
     1861 cgtggatgaa cggtgcccgg gcgtcggcga agacgggtgt cggcacggtg gtcgacacca
     1921 cgttcgtggc gctggcgacg aggccgaacg tacccacccg gtcgaaggtg catcccgtga
     1981 acgtggcgag cccggccgac gtgccggccg tggcggtcgg gacggacagg ccgctcgcac
     2041 aagccagcgt gccgagcggg tcggtccggg tgtcgatcgc caggctgatg gtcgcgctcg
     2101 tacccgtggt cacgatcgac tgcgggtact ggagcgagtc gacgatcgcc acccggacgt
     2161 cgaacgggcg cgtgaggtac gcctcactgg gcgatgacca gaactggatg gccatcggcc
     2221 cggccggggc cgccgcgacg ccgccgactc ccaggcccga gggtatcgcg aggcttgccg
     2281 cggccagggc gaggatcacg gtcttgcgtg cggcacgtga tagcgccatg gctgaccacc
     2341 ttcagtgcga acgggacggg cgccggaccg gatggtcggc ggcggctcga cgtcggcagc
     2401 gaggctcgac gacggtcgcg agcgaatcgt agcccgccga gggatcgccg gcgttgcatg
     2461 gagcgcgccg gcgccgacgg cgacgtgacg gttggtcccg ggggcgggag tcgaacccgc
     2521 acgacctcac ggccatccga ttttgagtcg gacgtgtctg ccattccacc accccgggcc
     2581 attcgtagtc tacggtcgga acccgcgcgg gatcaggggc gtctcgcccc ggatccgatg
     2641 ctagactcgc ccagcctcag aatcgccgtc cggagggatc ccccgaccgt ggaggacctt
     2701 cgctcgacga cggtcaccga tgaccccgtc cagcgccgcg acctcatcct gctcgagcgc
     2761 gcccgggagg gcgatctcgg agccttcaac gatctcgtct cgctctacca ggaccagctc
     2821 tttgcgctgg tcgtgcggat ggtgcctgat cgcgatcagg cgtccgacgc ggttcaggag
     2881 gcgttcttct cggccttccg ccacctggac tcgtttcggg gcgggagcgt caagtcctgg
     2941 ctgaaccgga tctgcgtcaa cgccgcgatg gacacgcagc gagcccggaa gcgccggccg
     3001 gtgcagccct atcccgagtt cgacgacgag agctggcagc cccccgccgg cgccgaggcc
     3061 gatcccgaac gcacggcgat gctcgctgag cgcacgcggg ccctctccac cgcccttgcc
     3121 gggatcaccg acgatcaacg cgcg
//
LOCUS       DATDDI010000652         1790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_76823, whole genome shotgun sequence.
ACCESSION   DATDDI010000652 DATDDI010000000
VERSION     DATDDI010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76823"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VIU37_09365"
     CDS             complement(<1..384)
                     /locus_tag="VIU37_09365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014206.1"
                     /translation="MPAPDRDPLAATQRLLIDGTNLLHSLQRGAGAAPAATLIGRLRA
                     IIPPRVTIELVFDGPPERGLRNERIASGTQVRYGGARSADAVILALIDDVRMVDGAEG
                     TAGLLIVTDDRELKYGARMRGARTAG"
     gene            430..1278
                     /locus_tag="VIU37_09370"
     CDS             430..1278
                     /locus_tag="VIU37_09370"
                     /inference="COORDINATES: protein motif:HMM:TIGR01460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEY6014207.1"
                     /translation="MSLLLLVDLDGVVYRGGEPVPGVAAVLADRAARGDDVVYVTNNS
                     MHYRADYQTRLAAMGAPVSPNTVVSSARATAAYLRTHDPDIRRVLVLGAGGLERELRD
                     EGYDVIGAGTAATRVTHEEIDGFEAAGRPDAVVVGLDPNLTYVRLTVASDCIRAGAHF
                     IATNRDPVYPTERGLKPGAGSVVVAVEAATGVVPISIGKPAPYLLEAAAHAVGREPGE
                     AIMIGDGIGTDLAAARAVGARCVFMLTGVTTRAQLEALAIADQPTAIAADAAELAAAL
                     DRLAEE"
     gene            complement(1328..>1790)
                     /locus_tag="VIU37_09375"
     CDS             complement(1328..>1790)
                     /locus_tag="VIU37_09375"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014208.1"
                     /translation="GLRLTVHAGEWGGAAQVRRALAVEPERIAHGPGTIDDPRLCAEL
                     AARDVTLDLCPTSNWQAGLVPTIASHPLARLHRAGVPVTLSTDDRTVSDVTLSEEYRR
                     AVREIGLTLAELWAIDRHALDVAFADEADLVLLREAFDAWAAGVPELGAPR"
BASE COUNT          227 a          661 c          681 g          221 t
ORIGIN      
        1 gccggccgtc cgggcgccgc gcatccgcgc gccgtacttg agctcgcgat cgtcagtgac
       61 gatgagcagg ccggccgtgc cctcggcgcc gtcgaccatc cggacgtcgt cgatcagggc
      121 caggatcacc gcgtcggccg accgcgcacc gccgtaccgg acctgggtcc cggacgcgat
      181 ccgctcgttg cgcaggccgc gctccggcgg gccgtcgaag acgagctcga tcgtgacccg
      241 gggcgggatg atcgcccgga gccggccgat cagcgtcgcc gccggcgccg cccccgcacc
      301 gcgctggagc gagtggagca ggttggtccc gtcgatcagc aggcgttggg tggcggccag
      361 cgggtcgcga tcgggagcag gcatctgacc catcgtacgc gaggccgggc gcgcggctac
      421 gatcgggccg tgagcctgct cctcctggtc gacctcgacg gcgtcgtcta tcgcggcggc
      481 gagccggttc ccggggtcgc cgcggtgctg gcggaccggg ccgcgcgagg cgacgacgtg
      541 gtctacgtga ccaacaactc gatgcactac cgggccgact accagacccg gctggcggcg
      601 atgggcgcac cggtctcgcc caacaccgtg gtctcgtcgg cgcgcgccac tgcggcctac
      661 ctccgcaccc acgaccccga catccggcgt gtcctggtcc tgggtgccgg cgggctcgag
      721 cgcgagctcc gcgacgaggg ctacgacgtg atcggcgccg ggaccgccgc gacgcgggtc
      781 acccacgagg agatcgacgg gttcgaagcg gccggccggc cggacgcggt cgtggtcggg
      841 ctcgacccga acctgaccta cgtgcgcctg accgtggcct ccgactgcat tcgggcggga
      901 gcgcacttca tcgccaccaa ccgggacccg gtctacccca ccgagcgcgg gctgaagccg
      961 ggcgccgggt cggtggtggt ggccgtggag gcggcaaccg gggtcgtgcc gatctcgatc
     1021 ggcaagcccg cgccgtacct cctggaggcc gccgcccacg ccgtcggtcg cgagccgggc
     1081 gaggcgatca tgatcggcga cgggatcggc acggacctgg cggccgcccg ggcggtgggc
     1141 gcgcgatgcg tcttcatgct gaccggcgtc acgacgcggg cccagctgga ggcgctcgcg
     1201 atcgcggacc agccgaccgc gatcgccgcc gacgccgccg agctcgcggc cgcgctcgat
     1261 cgattggcgg aggagtagtc cggcgctccg gccgggtcgc gacgccgcgt tcggcacgac
     1321 gctccggcta ccgcggcgcg cccagctccg gaacgcctgc ggcccaggca tcgaatgcct
     1381 cccggagcag gaccaggtcg gcctcgtccg cgaacgcgac gtcgagggcg tgccggtcga
     1441 tcgcccacag ctcggccagc gtcagcccga tctcccggac cgcccgccgg tactcctccg
     1501 agagggtgac gtccgacacg gtgcgatcgt ccgtgctgag ggtgacgggg acacccgcgc
     1561 ggtggagccg ggcgagcgga tgggacgcga tggtcggcac gagcccggcc tgccagttgg
     1621 aggttgggca caggtccagc gtcacgtccc gggcggccag ctcggcgcag agcctggggt
     1681 cgtcgatggt gccgggaccg tgcgcgatcc gctcgggctc gaccgccagc gcgcggcgga
     1741 cctgcgcggc gccgccccac tcgccggcgt gcacggtgag ccgcaggccg
//
LOCUS       DATDDI010000653         2883 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_34891, whole genome shotgun sequence.
ACCESSION   DATDDI010000653 DATDDI010000000
VERSION     DATDDI010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34891"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VIU37_09380"
     CDS             complement(<1..365)
                     /locus_tag="VIU37_09380"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF012532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEY6014209.1"
                     /translation="MTRSQRSPAVAAEPAGIGTSGARDPLATEVRLLGALLGQVVSEQ
                     AGPELFALVERIRRRTTALRADDDPAERARLDQDLRDLDLGSAEAVIGAFSLYFALVN
                     LAEAHARVRALRRRERAAR"
     gene            461..1861
                     /locus_tag="VIU37_09385"
     CDS             461..1861
                     /locus_tag="VIU37_09385"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY6014210.1"
                     /translation="MTTFDAGSSAGRLPDPVPDAARQPPDRAKGARPPAGPRSGPTTR
                     QGARPSLAPSAADQLEQLRFLHEVARLATTARTWDELLETVVDRTRDVLHADVSSLYL
                     LDRDGAYLTLAATNGLDRFQIGRARVPFGEGVTGRVAASRQPAVIADVRADPRFLWVR
                     GIDQRRFVASMLSVPLTWHDQIVGVLNVQTEQSRDFSEHDVAQLGAVADLLAGIIEKG
                     RQQTEAEARVEALKAIDEARSELIALVTHELRTPLAVVRAYTDLLADEPPLRGRESRD
                     LARRETRAAWHRATLEQIERLDRLVDSILASVRVVPEGPAAVTPVDLRALVEEVVASL
                     QPILERHRVEIQPSLRLHGLADPPRLRQILEHLVENAVKYAPPETAIRIDWGLHEGVV
                     QLGVSDEGPGIPDEWRERIFEPYARRDTHTARGSGIGLYAAKRLGESMGARLWCEPAR
                     PHGARFVVALPAAVAI"
     gene            1907..2620
                     /locus_tag="VIU37_09390"
     CDS             1907..2620
                     /locus_tag="VIU37_09390"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014211.1"
                     /translation="MSSRPLRILVVDDDPAMVGAITALVGTEGHQVITAYDGLTAVKR
                     FREEHPDLVLLDLAMPGPDGFNVAGQMRAVGPAPILVVSGESGEAAKVRALGIGADDY
                     LTKPFGKGELLARISAIMRRVDRSAAFGASGGGPLTVGDLVIEPGRHEARVGETALAL
                     TPTEFRLLEALVRAGGDIVPHLQLARSGWPAEPDPDLLWLKPHLARLRSKVEAAGGPQ
                     VVAVRGVGYRIVTEEERAG"
     gene            complement(2685..>2883)
                     /locus_tag="VIU37_09395"
     CDS             complement(2685..>2883)
                     /locus_tag="VIU37_09395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014212.1"
                     /translation="EFRSTAVREGRLAPVTCAACGCRLATAGDAFVHFQGFAGRDARG
                     CRIDCAEATHDASGRPVALAV"
BASE COUNT          379 a         1098 c         1048 g          358 t
ORIGIN      
        1 tcgcgggccg cgcgttcccg gcggcggagc gcccggacgc gggcgtgggc ctcggccagg
       61 ttgaccagcg cgaaatagag cgagaaggcg ccgatgaccg cctcggccga gcccaggtcc
      121 aggtcgcgca gatcctgatc gagacgggcc cgctcggccg gatcgtcgtc cgcccggagg
      181 gcggtcgtcc ggcggcggat ccgttcgacc agcgcgaaga gctccgggcc ggcctgctcc
      241 gagacgacct ggccgagcag ggcgccgagc agccggacct ccgtggcgag cgggtctcga
      301 gcgccggacg tcccgatccc ggccggttcg gcggcgaccg cgggcgaccg ttgcgatcgg
      361 gtcacggccg cgccccggct ggaccgttcc gagccccagc cgccaccggc ccgcaaccgt
      421 tctggacggc aaccttccgt aggcttgtat ggtggttgcc gtgacgacgt tcgacgctgg
      481 ctcgagcgcg ggccgcctcc cggatcccgt gcccgacgcg gcccggcaac cccccgatcg
      541 ggccaagggg gcgcgaccgc cggcgggccc gcgctcggga cccaccacgc ggcagggcgc
      601 ccgcccgtcg ctggcgccca gcgcggccga ccagctcgaa cagctccgct tcctccacga
      661 ggtggcgcgc ctggcgacca ccgcccggac ctgggacgag ctgctcgaga ccgtcgtcga
      721 ccggacccgc gatgtgctcc acgccgacgt ctcctcgctc tacctgctcg atcgggacgg
      781 agcgtacctg accctcgccg ccacgaatgg cctggatcgc ttccagatcg gccgggcacg
      841 tgtcccgttc ggcgagggcg tgaccgggcg cgtggccgcg agccggcagc cggcggtcat
      901 cgccgacgtc cgggccgacc cgcgcttcct gtgggtgcgc ggcatcgacc agcgccgctt
      961 cgtggcgtcc atgctgtcgg tgccgttgac ctggcacgac cagatcgtcg gcgtcctcaa
     1021 cgtccagacc gagcagtcgc gcgacttcag cgagcacgac gtcgcccagc tcggcgcggt
     1081 cgccgacctg ctcgccggga tcatcgagaa gggccgccag cagaccgagg ccgaggcccg
     1141 cgtcgaggcg ctcaaggcga tcgacgaagc ccgcagcgag ctgatcgcgc tggtcaccca
     1201 cgagttgcgc accccgctcg ccgtggtccg cgcctacacc gacctgctcg ccgacgagcc
     1261 gccgctgcgc ggccgcgagt cgcgcgacct cgcccggcgc gagacgcgag cggcctggca
     1321 ccgcgccacg ctcgagcaga tcgagcgcct ggaccggctg gtcgactcga tcctggcctc
     1381 cgtccgcgtg gtgccggagg ggccggccgc ggtcacgccg gtcgacctcc gcgcgctggt
     1441 cgaggaggtc gtggcctccc tccagccgat cctggaacgc caccgcgtcg agatccagcc
     1501 gagccttcgc ctccacggcc tggccgaccc gccgcgcctt cgccagatcc tcgagcacct
     1561 cgtggagaac gccgtcaagt acgcgccgcc ggagaccgcg atccggatcg actggggcct
     1621 ccacgaaggc gtcgtccagc tcggcgtgtc ggacgagggc ccgggcatcc ccgacgagtg
     1681 gcgcgagcgg atcttcgagc cgtacgcccg gcgcgacacg cacaccgccc gagggtccgg
     1741 catcgggttg tacgccgcca agcgactggg cgaatcgatg ggtgcccgcc tgtggtgcga
     1801 acccgcccgg ccgcacggcg cacgattcgt cgtggcgttg ccggccgcgg tcgccatctg
     1861 atgcgtcacc atcagccgtc acgcacgagt gaggtccatg atcacgatga gtagccgccc
     1921 cctccgaatc ctcgtcgtgg acgacgaccc cgcgatggtg ggggccatca ccgcgctcgt
     1981 cggcaccgag ggccaccagg tgatcaccgc ctacgacggc ctgacggccg tcaagcggtt
     2041 ccgcgaggag catcccgacc tggtcctgct cgacctggcg atgccggggc cggacggctt
     2101 caacgtcgcg ggccagatgc gcgcggtcgg ccccgccccg atcctggtcg tgtcgggcga
     2161 gagcggcgag gccgccaagg tccgggcgct cggcatcggc gcggacgact acctgaccaa
     2221 gccgttcggc aagggcgagc tgctcgcgcg gatcagcgcg atcatgcgcc gggtcgaccg
     2281 ctccgccgcg ttcggggcgt cgggtggggg gccgctgacg gtcggcgacc tggtcatcga
     2341 gccggggcgc cacgaggcgc gtgtcggcga gaccgcactg gcgctcacgc cgacggagtt
     2401 ccgcctgctc gaggcgctgg tccgcgccgg cggggacatc gtcccgcacc tgcagctggc
     2461 tcgatcgggc tggccggccg agccggatcc cgacctgctc tggctcaagc cgcacctcgc
     2521 ccgcctccgc tcgaaggtcg aggcggccgg cggcccgcag gtcgtggccg tgcgaggcgt
     2581 gggctatcgg atcgtgaccg aggaggagcg agccggctga cggctcgcca ccccgcggct
     2641 cgacgccacg ggcagcgccg agctcgctcg gcgcgaggtc ggactcagac ggcgagcgcg
     2701 accggccggc cggaggcgtc gtgcgtcgcc tcggcgcagt cgatccggca gcctcgcgcg
     2761 tcgcgcccgg cgaacccctg gaaatggacg aacgcatcgc cggccgtcgc caggcggcag
     2821 ccgcaggccg cgcaggtcac cggcgcgagg cgcccctcgc gaacggccgt ggatcggaac
     2881 tcg
//
LOCUS       DATDDI010000654         1610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_679990, whole genome shotgun sequence.
ACCESSION   DATDDI010000654 DATDDI010000000
VERSION     DATDDI010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679990"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VIU37_09400"
     CDS             <1..271
                     /locus_tag="VIU37_09400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014213.1"
                     /translation="YDPWTSARRPPYMVAEEVAAMRYLLDTHGLTYVDIWTREGKPGG
                     SVYVDDKAERYNGGARAWDRVTDRILVRLGKEEPQFPAFKQEVTA"
     gene            268..516
                     /locus_tag="VIU37_09405"
     CDS             268..516
                     /locus_tag="VIU37_09405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014214.1"
                     /translation="MIEGEIDVQYALGELQNLQTEMEQYFGTDGSLKPERIEGIEARL
                     KEQGDTIARLVGAVEALLEDIASNPYTAVEMASFALRG"
     gene            754..>1610
                     /locus_tag="VIU37_09410"
     CDS             754..>1610
                     /locus_tag="VIU37_09410"
                     /inference="COORDINATES: protein motif:HMM:NF024872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA primase/helicase"
                     /protein_id="HEY6014215.1"
                     /translation="MVYLPPDFQPRDRIIVVEGETDAMATWQALSDAGMLDKVAVIGL
                     SGTGSWGKAVREKGLIDSLFGPAKRVFVVFDNDDPYENADAVKSVERAWQEIRGDLGR
                     KARRVRLPQGTNDASEFFMAYDWAAFQVLLAKAAEPKRNYPRLDLTKPVPDTDWLVED
                     LLVSSEATGLVGDSGVGKSFITMALSLAIAGGADTFLGLKVRKHGPVVYVDEENSMQL
                     AMQRLAALGFDPAVHLPNLEYLWYAGVDLANEPEKLLEDVVEIEPALVVLDSQSRVAL
                     GVEENSNTD"
BASE COUNT          267 a          559 c          566 g          218 t
ORIGIN      
        1 gtacgacccg tggacgtccg cgcgccggcc cccgtacatg gtggccgagg aggtcgccgc
       61 catgcgctac ctgctcgaca cgcacggcct gacctacgtc gacatctgga cgagggaggg
      121 caagccgggc ggcagcgtct acgtggacga caaggccgag cggtacaacg gcggcgcccg
      181 cgcctgggat cgggtcaccg accggatcct cgtgcggctc ggcaaggaag agccccagtt
      241 ccccgcgttc aaacaggagg tcaccgcttg atcgaaggtg agatcgacgt ccagtacgcc
      301 ctcggggagc tgcagaacct gcagaccgag atggagcagt acttcggcac cgacggcagc
      361 ctcaagcccg agcggatcga gggcatcgag gcccggctca aggagcaggg cgacaccatc
      421 gcccggctcg tgggcgccgt cgaggcgctg ctcgaggaca tagcgtcgaa cccgtacacg
      481 gcggtggaga tggcctcctt cgcactgcgg ggctaggccc tggccgtcga cccggcggcg
      541 ctccgctggt tcgagaccag gcggggcatc cgccgcgcca ccctcgacgc gtacggcgtc
      601 accaccgacg ggcgtgacct cgtcttcgcc taccccggcg ggctcgtcaa gcgccggtac
      661 agcatcgaca aggacaaccc gttcgggctc gagaaggagg ggcgccgctt cgtctggaag
      721 gacgcgagcg ggggccccgt cgacgccggc caggtggtct acctgccgcc ggacttccag
      781 ccccgcgacc gcatcatcgt ggtcgagggc gagaccgacg ccatggcgac ctggcaggcc
      841 ctgagcgacg cgggcatgct cgacaaggtc gccgtcatcg gcctctcggg cacgggctcg
      901 tggggcaagg ccgtccgcga gaagggcctg atcgactcgc tcttcggccc ggccaagcgc
      961 gtcttcgtgg tcttcgacaa cgacgacccg tacgagaacg ccgacgccgt caagtcggtc
     1021 gagcgtgcct ggcaggagat ccggggcgac ctgggccgca aggcccgccg cgtccgcctc
     1081 ccgcagggca cgaacgacgc gagcgagttc ttcatggcct acgactgggc cgccttccag
     1141 gtgctcctgg cgaaggccgc cgagccgaag cggaactacc cgcggctcga cctgaccaag
     1201 ccggtgcccg acaccgactg gctggtcgag gacctgctcg tgtcgagcga ggccacgggc
     1261 ctcgtcgggg actcgggcgt cggcaagtcg ttcatcacga tggccctctc gctcgccatc
     1321 gcgggcgggg ccgacacgtt cctcgggctg aaggtccgga agcacggccc ggtcgtgtac
     1381 gtggacgagg agaactccat gcagctcgcg atgcagcggc tggcagccct ggggttcgac
     1441 cccgccgtcc acctcccgaa cctcgagtac ctctggtacg cgggcgtcga tctggcgaac
     1501 gaaccggaga agctgctcga ggacgtggtc gagatcgagc cggccctggt cgtgctcgac
     1561 tcgcagagcc gggtcgcgct cggcgtcgag gagaactcga acaccgacat
//
LOCUS       DATDDI010000655         4866 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_742313, whole genome shotgun sequence.
ACCESSION   DATDDI010000655 DATDDI010000000
VERSION     DATDDI010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_742313"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(254..781)
                     /locus_tag="VIU37_09415"
     CDS             complement(254..781)
                     /locus_tag="VIU37_09415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014216.1"
                     /translation="MLIAALALAALPGLAGSRVPNPIEPLPASAFQPLSVPAYQARST
                     ISIGSLDAAHAAAGPVAADTSFIEPGNAPDSGPTARVKLNQPDPHSAFARKPPRYTLT
                     GEATFYDNGTTAMRLPRGTIVVICGNGGCVERVVTDWGPQKASRIVDLYRPDFFAICG
                     CAWWSGTTRVTVSVY"
     gene            complement(948..2987)
                     /locus_tag="VIU37_09420"
     CDS             complement(948..2987)
                     /locus_tag="VIU37_09420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014217.1"
                     /translation="MNGIGPVGRRTDQWRSAHERARVRAAERLEAPLPASEAAWLEDH
                     LRDCPSCAAIAASYAADRAMLRRLRDANPEPPRDLWARTSAAIEREAAGRGRRRRTTA
                     SPPAPSRPAVGALSALAVVAVVLVATALSGGFLGEHGIALASSHPGDSAPASLRAAPT
                     AIAVGAGQVRWLGVSDNGAFAYNVANVDAVCPVDRQPDCAPFADGHARPVTLTATPRY
                     VFQSPVDDQAVVVGTDAAGADAVIVVALPTPEPAVTPAASEPPASDSPAPSGATAANE
                     PTPTSTPTPPAASTEPTASAVISLLPSSSEPGTAPTDVLVASASPSVEPAPGTAVAII
                     TDVTVVGRGAGYSADGAWFAFSARPADGSTGPDIYVWHVGDPVALPLTRDHASIFASW
                     VGNQLLGSRTMPAEPGSAESPDGGPSEVPAAEPTPTPTSTPAPEASANVEASAPPEPT
                     PAPEFAARTFLIDPLTGTETPMLGADWQPVVDPTGVFVAAWEGTVRAGPDGLSMVPAT
                     GRLVVHAFQVLPDPAAGDTPADAPTGSASVEPSDLPSDQPVAPTDASPVPSSAPAVEP
                     QVIAEGPISEFDVRWDSTGTWLAVWIADAADPSIGRLSLLHVDAATGRIDRPTGAPQD
                     VPALPGFSIGAGRLAWATPPGQGGEGSRIQIVAWTEADAVGAIESVPVEGAIVIQ"
     gene            complement(2984..3550)
                     /locus_tag="VIU37_09425"
     CDS             complement(2984..3550)
                     /locus_tag="VIU37_09425"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY6014218.1"
                     /translation="MSGIWDRDEAAVFVETLFGKHHGEIYAYLLRMLREPELAADLTQ
                     DAFIKAYRNYETLEKPENARAWLYQIAHRVALDEIRRRKIIRFFPWTGESPGAAPSAE
                     HLVMDAHLSAEMQRALARIPERQRAALLLAELHDLTGLELAAALGVSHVAARALLTRA
                     RESLRQALAAERSDAPDGGRPAPDEGSR"
     gene            complement(3741..4739)
                     /locus_tag="VIU37_09430"
     CDS             complement(3741..4739)
                     /locus_tag="VIU37_09430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014219.1"
                     /translation="MAAGLFELRKDPITGWWVATVVDRAFHRDRFARAADPVDDQVDG
                     CANCSIPAGDGVRVRMLKDFAFHVVGTGEDARELDRSIAQVPLSQARETGSWQTIVAP
                     PGEHRPLHAVGNDLIEALVGRARDALADARASGQTDYLQVVQNWGAQAGARTNHLCLD
                     LYDLPQIPHRIAEEMGGAARFVIREGECPFCRLVRQTATEPERLVWEDASSVAIAPFA
                     SRSPFEVWIVPRRHEADFGRSTAADLGAIAEALRQVLSRLATSLDGPPYNLVLHSAPL
                     REQIDATYHWHWEIHPRLREIAGLELGTGLPVNPVSPEDAVEELLGRAELAGGGSG"
BASE COUNT          661 a         1711 c         1845 g          649 t
ORIGIN      
        1 cgatcgaatc ggcgatccgg tgggcaagcg ggacgccgcg acgctggatg ccgatgagga
       61 ccaggccgtc cgtgccggcc tgcttctcga cgatctcgtg ggataggcgg atcgtcgccc
      121 ggcggatctc gtccgcggtc atgatctgac ggccgctcat cgctccttcc cggcctcgcg
      181 gggccttccg ggcggcctca ctgggccgtg gctgaagggt cccgccaagg ataccgcgcc
      241 gagtcgggcg cgatcagtag acggagacag tcacccgggt cgtgccggac caccaggcgc
      301 atccgcagat cgcgaagaag tcgggccggt agaggtccac gatccgcgac gccttctgcg
      361 gcccccagtc ggtgaccacg cgctcgacgc agccgccgtt gccgcagatg accacgatcg
      421 tgccccgcgg cagtcgcatg gcggtcgtcc cgttgtcgta gaaggtcgcc tcgccggtca
      481 gcgtgtagcg cggcggcttg cgggcgaacg ccgagtgcgg atccggctgg ttgagcttga
      541 ctcgcgcggt cgggccgctg tccggcgcgt tgcccggttc gatgaacgag gtgtcggccg
      601 ccaccggacc ggcggcggcg tgggcagcat cgagcgatcc gatcgagatc gtcgatcgcg
      661 cctggtacgc cgggaccgag agcggctgga atgcgctggc cgggaggggt tcgatcgggt
      721 tggggacccg tgaacccgcg agacccggca gcgccgccag ggcgagggcg gcgatgagca
      781 ccgaccctac gaccaacctg cttggccgca cgagacgcac accatacgac cgttggcgtc
      841 cggctgcacg ccactgtcgc acggtcggca acgcgagcgc actcggaagt gcgtgagcga
      901 gcgcgcacag gcagcgacgc ctcgatccgc cgccatcgcg ggccgggcta ttggatgacg
      961 atggcgcctt ctacggggac gctctcgatc gccccaaccg catccgcctc cgtccacgcc
     1021 acgatctgga tccggctccc ctcgccaccc tgacccggcg gcgtcgccca ggcgaggcga
     1081 ccggccccga tcgagaaccc gggcagggcc ggcacgtcct gcggggcgcc tgtcggacga
     1141 tcgatgcgtc cggtggcggc atcgacgtgg agcaggctca gccgcccgat ggaggggtcg
     1201 gcggcgtcgg cgatccagac cgccagccac gtgccggtgc tgtcccagcg gacatcgaac
     1261 tccgagatcg gaccctcggc gatgacctgc ggctccaccg ccggtgcgga actcgggacc
     1321 ggcgacgcgt cggtcggcgc gaccggctgg tccgacggaa ggtcggacgg ctcgaccgac
     1381 gccgatccgg tgggagcgtc ggcgggcgtg tcgccggccg ccggatcggg aaggacctgg
     1441 aacgcgtgga ccacgagccg gccggtggcc ggcaccatgg acaacccgtc cgggccggcg
     1501 cggactgtcc cctcccaggc ggcgacgaag acgccggtcg gatcgacgac gggctgccag
     1561 tccgccccga gcatcggcgt ctcggtgccc gtcagcgggt cgatcaggaa cgtccgggcg
     1621 gcgaactccg gggcgggggt cggctcgggc ggcgcggatg cttcgacgtt tgcactcgcc
     1681 tccggcgcgg gcgtcgaggt cggcgtcggc gtgggttcag cggccggcac ctccgacggg
     1741 ccaccgtcag gcgattccgc cgatccgggc tcggccggca tcgtacggct ccccagcagc
     1801 tggttgccga cccacgacgc gaagatgctc gcgtgatccc tggtgagtgg cagcgccacg
     1861 ggatcgccaa cgtgccagac gtagatgtcc ggtccggtcg acccatcggc gggtcgggcg
     1921 ctgaacgcga accaggcgcc gtcggccgag tagccggcac cacggccgac gaccgtcacg
     1981 tccgtgatga tcgcgacggc cgtcccgggc gccggctcga cgctcgggct ggcgctcgcg
     2041 accagcacgt cggtcggcgc ggtgcccggc tcgctcgaac tcggcagcag gctgatcacg
     2101 gcactcgccg tcggctcggt gctggccgcc ggcggggtcg gggtcgacgt gggcgtcggc
     2161 tcgttggcgg cggtcgctcc cgacggcgcc gggctgtccg aggcgggcgg ctcgctcgcc
     2221 gccggcgtca ccgccggctc gggcgtcggc agggccacga cgatgacggc gtccgcaccg
     2281 gcggcgtccg tgccgacgac cacggcctgg tcgtccaccg gggactggaa cacgtacctg
     2341 ggagtggccg tgagcgtcac cggacgggcg tggccgtcgg cgaagggcgc acagtcgggc
     2401 tggcgatcga ccggacagac cgcgtccacg ttggcgacgt tgtacgcgaa cgcgccgttg
     2461 tcgctgacac cgagccagcg cacctggccg gcaccgacgg cgatggcggt cggcgcggct
     2521 cgcaggctgg ccggcgcgct gtcgcccggg tggctcgagg ccagcgcgat gccgtgctcg
     2581 ccgaggaacc cgccggacag ggcggtcgcc acgaggacga ccgcgaccac cgcgagcgcc
     2641 gacagggctc cgaccgccgg ccgagacggc gccggtggcg aggcggtcgt tcgacgacgg
     2701 cggccacgcc cggcggcctc gcgctcgatc gccgccgacg tgcgagccca gagatcccgt
     2761 ggcggctccg gattcgcgtc gcgcaggcgg cgcagcatcg cccggtccgc ggcgtatgac
     2821 gcggcgatcg cggcgcagga cgggcagtcg cgcaagtggt cctcgagcca ggcggcctcg
     2881 ctagccggca gcggcgcctc gagccgctcg gcggcgcgga cgcgggcgcg ttcatgcgcg
     2941 gaccgccatt ggtcggtccg ccgtccgacg ggtccgatgc cgttcatcgt gatccctcat
     3001 ccggtgccgg ccggccgccg tcgggagcgt cgctgcgttc ggcggccagt gcctggcgga
     3061 ggctctcgcg cgcccgggtg agcagcgcgc gggccgccac gtgactcacg cccagcgcgg
     3121 ccgccagttc gaggccggtc agatcgtgga gctccgcgag gagcagggcg gcgcgctgcc
     3181 gctcggggat gcgcgcgagt gcgcgctgca tctcggccga caggtgcgca tccatcacga
     3241 ggtgctcggc cgacggggcg gcacccggcg attctccggt ccagggaaag aaccggatga
     3301 tcttgcggcg gcggatctcg tcgagcgcca cgcgatgggc gatctggtac agccaggccc
     3361 tggcgttctc gggcttctcg agcgtctcgt agttgcgata ggccttgatg aacgcgtcct
     3421 gggtgaggtc ggccgcgagc tccggctcgc gcagcatccg caacaggtag gcgtagatct
     3481 cgccgtggtg cttgccgaac agcgtctcga cgaagaccgc cgcctcgtcg cggtcccaga
     3541 tgccgctcac ggcgatgcct cgcggtccgg tgcgggacga gcggccgagg gaatcgcgcg
     3601 tatcggcgag aggaagatcg acgaccacga aggctccgag cgaagagaac cacgatgcgc
     3661 ggtcattggg cggcgcgcgc tcgtcggccc agagacgagg ggctgggagc acgtgtgacg
     3721 ccccatgcgc gaccggacga tcaacccgag ccgcccccgg caagctccgc ccggccgaga
     3781 agctcctcga ccgcatcctc cggggagacc gggttgaccg gcaggccggt gcccagctcg
     3841 agaccggcga tctcgcgcag cctgggatgg atctcccagt gccagtggta cgtggcgtcg
     3901 atctgctccc gcagcggtgc gctgtggagg accaggttgt acggcggccc gtccaggctc
     3961 gtcgcgaggc gcgagagcac ctggcgcagg gcctccgcga tcgcgccgag gtccgcggcg
     4021 gtcgatcgac cgaagtccgc ctcgtgtcgg cgtggcacga tccagacctc gaacggcgag
     4081 cgcgaggcga acggagcgat cgccacgctc gacgcgtcct cccagaccag gcgctcgggt
     4141 tcggtcgcgg tctggcggac gagccggcag aaggggcact ctccttcgcg gatcacgaac
     4201 cgcgcggcgc cacccatctc ctcggcgatg cggtgcggga tctggggcag gtcgtagaga
     4261 tcgaggcaga ggtggttcgt ccgggcgccg gcctgcgcgc cccagttctg gacgacctgc
     4321 aggtagtccg tctggcccga ggctcgggcg tcggcgaggg cgtcgcgggc tcgcccgacg
     4381 agcgcctcga tcaggtcgtt cccgacggcg tggagcggtc gatgctcgcc agggggcgcg
     4441 acgatcgtct gccagctgcc ggtctcccgt gcctgcgaga gcggcacctg ggcgatcgag
     4501 cggtcgagct cgcgggcgtc ctccccggtc ccgacgacat ggaaggcgaa gtccttgagc
     4561 attcggaccc ggacgccgtc gcccgccggg atcgagcagt tggcgcaccc gtcgacctgg
     4621 tcgtcgaccg ggtccgccgc gcgcgcgaac cggtcgcggt ggaacgcccg gtccacgacc
     4681 gtcgccaccc accagccggt gatggggtcc ttgcgcaact cgaacaggcc ggcggccatc
     4741 ggtcagatcc cttcgatcgg cgcgtcgagc gcgcttccca gggcgtgggc gaagatcccg
     4801 gcggctcgtt cgacggattc ggtcgagggc cgggccgtga catcgccgag ctcggcggcg
     4861 atcgag
//
LOCUS       DATDDI010000656         2112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_305297, whole genome shotgun sequence.
ACCESSION   DATDDI010000656 DATDDI010000000
VERSION     DATDDI010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305297"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1381)
                     /locus_tag="VIU37_09435"
     CDS             complement(<1..1381)
                     /locus_tag="VIU37_09435"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019200 - carbohydrate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEY6014220.1"
                     /translation="MSGDEQLLAVDVGTQSVRALVFDAGGALLASARIPIEPYVSPKP
                     GWAEQDPELYWRTLGEASRRVLADPAVRRDAIAGLALTTQRGTVVVTDEAGTPLRPAI
                     VWLDQRRTEGLPPVGGAIGLAFRALGLRETIAGFAADCEANWLRAHEPGTWRSIRHYL
                     GLSGFLLHRLTGRFVDSTAAQVGYLPFDYKRFRWAAGGDWKWQVAPVEPGWLPALEPP
                     TARLGELTAAAADATGLRAGLPVVAAAADKACEVLGSGALTPEVASLSYGTTATVNTT
                     SLRYIEPVRMIPPYPAAIPGAWTLEIQVYRGYWLVEWFKREFGDREVALAASRGVEAE
                     VLFDDLVRAVPAGSMGLLLQPYWSPGVRIPGREAKGAIIGFGDVHTRAHLYRAILEGL
                     AYALRDGAERTAARTGVPLTSLRIAGGGSQSPAAVQLTADIFGLPVAKVHTHETSGLG
                     AAIDAAVGLG"
     gene            complement(1378..>2112)
                     /locus_tag="VIU37_09440"
     CDS             complement(1378..>2112)
                     /locus_tag="VIU37_09440"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6014221.1"
                     /translation="QSGLPLSMARVSTPLETATTFALAGDRRGSGLLRRYLGWRGQGP
                     DRCLVIVGLSGHPDIVGATARAVDDLVRGSHGVAAPGVGPAWRRSRFSAPYLRNALWE
                     EGYAVDTLETATDWTTLPALATDLAQVLRHGLEPAGERVHAFSHLSHPYGTGSSLYTS
                     YVFRLAGDPDATLERWRTLKSAASEVIVRHGATISHQHGVGTDHAPYLAAEKGPLGMR
                     TIETLVREFDPDGVMHRGVLLEDRSR"
BASE COUNT          293 a          780 c          782 g          257 t
ORIGIN      
        1 gccccaggcc caccgcggca tcgatcgccg caccgagacc cgacgtctcg tgcgtgtgga
       61 ccttcgccac cggcaggccg aagatgtcgg cggtcagctg gaccgccgcg gggctctgcg
      121 atccgccacc ggcgatccgg agcgaagtca gcggcacgcc ggtccgcgcc gccgtccgct
      181 cggcgccatc gcgcaacgcg taggcgaggc cttcgaggat cgcgcggtag aggtgcgccc
      241 gggtatggac gtcgccgaag ccgatgatcg cgcccttggc ctcgcggccg gggatgcgga
      301 cgccgggtga ccagtacggc tggaggagca ggcccatcga tccggccggc accgcccgca
      361 cgaggtcgtc gaacaggacc tcggcctcca cgccgcgcga cgcggcgagc gcgacctcgc
      421 ggtccccgaa ctcgcgcttg aaccattcga ccagccagta cccccggtag acctggatct
      481 cgagcgtcca ggcgcccggg atcgccgccg ggtacggcgg gatcatccgg accggctcga
      541 tgtagcggag cgacgtcgtg ttcaccgtgg cggtcgtgcc gtacgacagg ctggcgacct
      601 cgggtgtcag cgcccccgag cccaggacct cgcatgcctt gtccgccgcc gcggcgacga
      661 cgggcagccc ggcccgcagc ccggtcgcgt cggccgcggc cgccgtcagc tccccgagcc
      721 gcgcggtcgg gggttcgagt gcaggcagcc agccgggctc gacgggcgcg acctgccact
      781 tccagtcgcc gccggccgcc cagcgaaagc gcttgtagtc gaacggcagg tagccgacct
      841 gggcggcagt cgagtcgacg aagcggccgg tcagccggtg gagcaggaac cccgacagcc
      901 cgaggtagtg ccggatcgag cgccacgttc cgggttcatg ggcgcgcagc cagttcgcct
      961 cgcagtcggc cgcgaatccc gcgatcgtct cgcgcagccc gagcgcgcgg aaggccaggc
     1021 cgatcgcccc gccgacgggc ggcaacccct cggtccggcg ctggtccagc cagacgatgg
     1081 ccgggcgcag cggcgtgccg gcctcgtccg tgacgacgac cgtgccgcgt tgggtggtga
     1141 gcgccagccc ggcgattgca tcgcgccgga cggccggatc ggcgagcaca cggcgggagg
     1201 cctcgccgag cgtccgccag tacagctcgg ggtcctgctc cgcccagccg ggcttcggcg
     1261 agacgtaggg ctcgatcggg atccgtgccg aggccagcaa cgccccgccg gcatcgaaca
     1321 cgagggcccg gacgctctgc gtgccgacgt cgaccgcgag gagctgctcg tcgccgctca
     1381 ccgcgaccgg tcctcgagca ggacgccgcg atgcatcacg ccgtcgggat cgaactcgcg
     1441 gacgagtgtc tcgatcgtgc gcatccccag cggccccttc tcggcggcga ggtagggagc
     1501 atgatccgtc cccaccccat gctggtggct gatggttgcg ccgtggcgga cgatgacctc
     1561 gctcgccgcc gacttcagcg tccgccagcg ctcgagggtg gcgtccgggt cgccggcgag
     1621 ccggaagacg tagctcgtgt acaggctgga gccggtcccg tacgggtgcg acaggtggct
     1681 gaacgcgtgg acccgctcgc cggcaggctc gagcccgtgc cggaggacct gtgccaggtc
     1741 ggtggcgagc gccggcagcg tcgtccaatc ggtcgcggtc tcgagcgtgt cgacggcgta
     1801 gccctcctcc cacagcgcgt tgcgcaggta gggcgcgctg aaccgcgacc ggcgccaggc
     1861 cgggccgacc ccgggcgccg ccacgccgtg cgagccacga acgaggtcgt ccaccgcgcg
     1921 ggccgtggcg ccgacgatgt cgggatggcc gctcagcccc acgatcacga gacagcgatc
     1981 cggcccctgg ccgcgccagc cgaggtagcg gcggagcagg ccgctgccgc gacggtcgcc
     2041 cgccagcgcg aacgtggtgg ccgtctcgag cggtgtcgag acgcgggcca tggacagcgg
     2101 caggcccgac tg
//
LOCUS       DATDDI010000657         1887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_575874, whole genome shotgun sequence.
ACCESSION   DATDDI010000657 DATDDI010000000
VERSION     DATDDI010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_575874"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VIU37_09445"
     CDS             <1..208
                     /locus_tag="VIU37_09445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014222.1"
                     /translation="RTWSTMGSDTNIIAASAAALADSLEFAIWKSGSELRRRDERHFT
                     TVRPAASDAAASPAVHGATATPRR"
     gene            213..752
                     /locus_tag="VIU37_09450"
     CDS             213..752
                     /locus_tag="VIU37_09450"
                     /inference="COORDINATES: protein motif:HMM:NF020091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEY6014223.1"
                     /translation="MTAAPKAAEATLQLARWTVTSGSNVRSRGAVVITSGDHEWRASA
                     TGNGAIDALYRAIDKALNDMLGGHPRLLAFDVHALGEGSDTIGSVTVRVAPPESAGDR
                     GTGEYGGEARDPSIIAASIEAYIKAINAMLAETHWSGAAEAAGNRRRVAVSAGKAREQ
                     RADLDEDEGQHDTVSWFER"
     gene            820..1671
                     /locus_tag="VIU37_09455"
     CDS             820..1671
                     /locus_tag="VIU37_09455"
                     /inference="COORDINATES: protein motif:HMM:NF012998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEY6014224.1"
                     /translation="MTSQLPIAYAGEPGAFAEDAVLIAYGDVDRRSVGSFRDVFRAVT
                     AGEAAAGVIPIENVINGTVRENYDLLLEHDLEIVGEVVVPVRLCLAALPGQRLEGIER
                     VYSHIQALGQAESFLRTRPWQLLTTYNTAGAGKSIADRGERAAAAVLSPRAAGLFGLE
                     VLADEIGDLAGNRTRFAVLARPGAQVPPTAGTEASADRRTTLVLAVRNEPGTLLAVLR
                     VFAEHGLNMSKLESRPSRERAWEYVFWVDLDADTARPETQAALHALRGVTTMTRVLGC
                     YPRAAEG"
BASE COUNT          275 a          666 c          704 g          242 t
ORIGIN      
        1 gcggacgtgg tcgacgatgg gcagcgacac gaacatcatc gccgcctcgg cggcggcgct
       61 cgcggactcg ctcgagttcg cgatctggaa gtcgggctcg gagctgcgcc ggcgcgacga
      121 acgccatttc acgacggtcc gtccggccgc ctccgacgcg gcagcgtcgc cggcggtgca
      181 cggcgcgacc gccacgccac ggaggtgacg acatgaccgc cgcgcccaag gccgccgagg
      241 cgaccctcca gctggcccgc tggaccgtca cgtccgggag caacgtcaga agccggggtg
      301 cggtggtcat cacctccggc gatcacgaat ggcgggcgtc ggcgaccggg aacggcgcca
      361 tcgacgcgct ctaccgggcg atcgacaagg cgctcaacga catgctcggc gggcaccctc
      421 ggctgctggc cttcgacgtc catgccctgg gcgaagggtc ggacaccatc ggcagcgtga
      481 cggtccgggt tgcgccgccg gagagtgccg gcgaccgggg gaccggggag tacggcggcg
      541 aggcccggga ccccagcatc atcgccgcgt cgatcgaggc gtacatcaag gcgatcaacg
      601 ccatgctcgc cgagacccat tggtccggcg cggccgaggc ggccgggaac cgccgacgcg
      661 tggccgtctc cgccggcaag gcccgcgagc agcgcgccga tctcgacgag gacgagggcc
      721 agcacgacac ggtctcctgg ttcgaacgct gatcccgcgc gggccggacc cggcgcgtcg
      781 gggtcgcgtc gggccgccgg gccgctacac tccgcggcga tgacgagcca gttgccgatc
      841 gcctacgccg gggagcccgg cgccttcgcc gaggatgcgg tgctgatcgc gtacggcgac
      901 gtggaccgtc gctccgtggg cagcttccgg gacgtgttcc gggcggtgac cgcgggcgag
      961 gccgcggccg gggtgatccc catcgagaac gtcatcaacg gcacggtccg cgagaactac
     1021 gacctcctgc tcgagcacga tctcgagatc gtcggcgagg tcgtggtgcc ggtccggctc
     1081 tgcctggccg cgctgccggg gcagcggctc gaggggatcg aacgggtcta ctcgcacatc
     1141 caggccctgg gccaggccga atcgttcctg cgcacccggc cctggcagct gctgacgacc
     1201 tacaacaccg cgggggcggg caagtcgatc gccgatcgcg gagagcgcgc ggcggcggcg
     1261 gtcctgtcgc cgagggccgc cgggctgttc gggctcgagg tcctggccga cgagatcggc
     1321 gacctggccg gcaaccggac ccggttcgcg gtcctggccc ggcccggcgc ccaggttccg
     1381 ccgacggcgg gcaccgaagc atcggccgat cggcggacca cgctggtgct ggccgttcgc
     1441 aacgagccgg gaacgctgct cgcggtcctg cgcgtgttcg ccgagcacgg gttgaacatg
     1501 agcaagctcg agtcccggcc aagccgcgag cgagcctggg agtacgtctt ctgggtcgac
     1561 ctcgacgccg acacggccag gccggagacg caggccgcac tccacgccct ccggggcgtg
     1621 accacgatga cccgcgtcct cggctgctat cccagggccg ccgagggctg accggcccgc
     1681 ggcggcggcg gcggtgccgc ggcctcgttc agatcgcgct cgcgcaggcc cggcacttgg
     1741 acgcgtcgac ggcgttggcc tccttgcaga acgggcaggt cttggcggcc gtgggcggcg
     1801 gctccttgat gaacatccgg gagatctgac agaccacgaa cgcgatgatg atgaacgcga
     1861 tgatcgcgtt caggaaggtg ccgtagc
//
LOCUS       DATDDI010000658         1707 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_388969, whole genome shotgun sequence.
ACCESSION   DATDDI010000658 DATDDI010000000
VERSION     DATDDI010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388969"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..327)
                     /locus_tag="VIU37_09460"
     CDS             complement(<1..327)
                     /locus_tag="VIU37_09460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014225.1"
                     /translation="MRPDVARRPRYAALSPFGTALLVALVAIGAVSLALPRNALATTT
                     MAAACDGVRLRTGPTTGDPIATTLFAGSQVGVETTVTAGSWSTSCAGASVSGTTWYAI
                     SQVDGQA"
     gene            511..1140
                     /locus_tag="VIU37_09465"
     CDS             511..1140
                     /locus_tag="VIU37_09465"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6014226.1"
                     /translation="MADIPRLPRRIAGLDVPQDRVSAATWRWAHRALPDYLLTHSVRA
                     YCWGAAIAAGEGWGFDRRILWTASLMHDFGLTRIARNTMCFEVEGAEFARRFLERQGM
                     DSGDADRVAVAIILHMQPSVTLDDGVEAVLLDRSTSLDVRGEGYSLVDAVRSVVMQDF
                     PRRAFDRRFVAAIAREAAIRPGCQSNRLLLQTGLAAWMARSPWATEDRL"
     gene            1143..>1707
                     /locus_tag="VIU37_09470"
     CDS             1143..>1707
                     /locus_tag="VIU37_09470"
                     /inference="COORDINATES: protein motif:HMM:NF013353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036361 - racemase activity, acting on
                     amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEY6014227.1"
                     /translation="MADERILGIVGGIGPESTIDYYRALVRTWRLRRPDGSYPRVVID
                     SVEAGRVIRWLGETRYAAVGRDLGSALRELSAAGCGRALIASNATHLAFDHIDPPPPM
                     PMIHIVDAARDGAAAAGHRRLGLIGTRFIMESRLYPDRFEPAGLSIHIPTAEERDVVH
                     AIYMGELILGEIRDDSRERLVAVIAAMR"
BASE COUNT          228 a          617 c          614 g          248 t
ORIGIN      
        1 ggcctggccg tcgacctggc tgatcgcgta ccacgtggtg cccgagacgc tcgcgcccgc
       61 gcaactggtg ctccaggagc cggccgtcac ggtcgtctcg acgccgacct gcgagccggc
      121 gaacagcgtg gtggcgatcg ggtcgcccgt cgtgggaccg gtccggaggc gaaccccgtc
      181 gcaggcggcc gccatcgtcg tcgtagccag cgcgttgcgg ggcagggcta gggagaccgc
      241 accgatcgcg accagggcga cgagcagcgc cgttccgaac gggctcagag cggcgtaacg
      301 ggggcggcgg gcgacgtcgg gtcgcatggc tacctcgctc gctggaaccc ccggaacgac
      361 gccggtagcc gcgcggcccg cgagactcgt cggagcccct ccgcgccggc ccgtctgggg
      421 ccctctctcg cgcgaaacga tacacgaccc ggccaaaccc gcccgtcgac ccgcaggacc
      481 ggtggcggtc cggcccgcta cgatgggacc gtggccgaca tccccagact cccgcgccgg
      541 atcgccggcc tcgacgttcc gcaggatcgc gtctccgctg cgacatggcg ctgggctcac
      601 cgggcgctcc cggactacct gctcacgcac tcggtccgcg cctattgctg gggagcggcc
      661 atcgccgccg gcgagggctg gggcttcgac cggcggatcc tgtggaccgc ctccctgatg
      721 cacgacttcg ggttgacccg gatcgcgagg aacacgatgt gcttcgaggt cgaaggggcg
      781 gagttcgctc gccggttcct cgagcgccag ggcatggaca gcggggacgc ggaccgggtc
      841 gcggttgcga tcatcctcca catgcagccg tcggtgacgc tggatgacgg cgtggaagcg
      901 gtcctcctcg accgttcgac gtcgctcgac gtccgcggcg agggctactc gctcgtggac
      961 gccgtccggt cggtcgtcat gcaggacttc ccgcgccgcg cattcgaccg ccggttcgtt
     1021 gccgccatcg cacgcgaggc cgcgatccgc cccgggtgcc agagcaaccg gctgctcctc
     1081 cagacgggtc tggcggcgtg gatggcgcgc tccccgtggg cgaccgagga ccggctgtag
     1141 gcatggcgga cgagcggatc ctcgggatcg tcggcggcat cgggccggag tccaccatcg
     1201 actactaccg cgcgcttgtc cggacctggc gcctccgtcg gcccgacggc agctatccgc
     1261 gggtcgtcat cgacagcgtc gaagccggcc gggtcatccg gtggctcggc gaaacccgat
     1321 acgcggccgt cggtcgcgac ctgggttcgg cgctccgcga gctgtcggcg gccggctgcg
     1381 gccgcgcgct catcgcgtcg aacgcgaccc atctggcgtt cgaccacatc gacccgccgc
     1441 cgccgatgcc gatgatccac atcgtggatg cggcgaggga tggggcggcc gcggcgggcc
     1501 accggcgtct cgggctgatc ggcacgaggt tcatcatgga atcgcggctc tacccggatc
     1561 gcttcgagcc cgccggcctg tcgatccata tccccacggc cgaggagcgg gacgtcgtcc
     1621 acgcgatcta catgggcgag ctgatcctgg gcgagatccg ggacgacagt cgcgagcgtc
     1681 tcgttgccgt catcgccgcc atgcgcg
//
LOCUS       DATDDI010000659         2355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_201583, whole genome shotgun sequence.
ACCESSION   DATDDI010000659 DATDDI010000000
VERSION     DATDDI010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201583"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VIU37_09475"
     CDS             <1..618
                     /locus_tag="VIU37_09475"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEY6014228.1"
                     /translation="RLAGIDLSVACDVANPLLGPTGAAAVYGPQKGATAADVVELDRR
                     LAFYADAIEASAGRRVRDTPGAGAAGGVGFALLAIADRFHTFALRPGVELLMEATGFD
                     ARLAGSDLVVTGEGRIDAQTAFGKTALGVARRAAQAGVACVAVGGGVVPDGIEALAGV
                     GAIAVPITEHPQSVQAAMGAGTAPVERCGERIARLASIWLESVPR"
     gene            635..1459
                     /locus_tag="VIU37_09480"
     CDS             635..1459
                     /locus_tag="VIU37_09480"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014229.1"
                     /translation="MSPVKAAPKRPRKRRFSNPGRTWAKTLERHRPGLVRYVLDELGD
                     AYGRPVWERRLDPTSELILTILTQNSADTNAEVAFEALRQRYPSGGVVQAHNPGAGWG
                     GVGLPDGSAPDWAAVEQAPLPELVDTIRPGGLANQKAPRIQATLRRIREERGDYSLDF
                     LADMSALDGRAWLTSIDGVGKKTASILLLFSFGLPLFPIDRHVERVARRVGLVGPKVS
                     VDDAHDLFLGMLQPDEMYEAHVNLIQHGRKICHAQRPECGRCPIRARCRYVDPKAP"
     gene            1490..2266
                     /locus_tag="VIU37_09485"
     CDS             1490..2266
                     /locus_tag="VIU37_09485"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014230.1"
                     /translation="MFSGGPGVAFGAQSPRILIVDDDPNLLVLLAEQLRADGYETMTA
                     RDGTEALRRLQTSWPDLLIIDMMMPRMDGLSLAREIKSRADLPIIVLSAIDAGDSKAD
                     LLEEVAEDYVTKPYHYPELRARINRVLRRLGDKVPRQSLVLGPDLTLDLHRREATVAG
                     TVVALTPTESRLLYALAANLGQTVMTETLLARGWAETEDADPSYVWVTMRRLRQKVER
                     DPNHPVHLQTVRGVGYRLVSTAPEPSPAPGAPPAPAPTDG"
BASE COUNT          326 a          891 c          819 g          319 t
ORIGIN      
        1 cgcctcgccg ggatcgacct gtcggtcgcc tgcgacgtgg cgaacccgct gctcgggccg
       61 accggcgcgg cggcggtgta cggcccgcag aagggcgcca cggcggccga cgtggtcgag
      121 ctcgatcgac ggctcgcctt ctacgccgac gccatcgagg cgagcgccgg tcgccgcgtc
      181 cgcgacacgc cgggtgccgg ggcggccggc ggcgtcgggt tcgccctgct ggcgatcgcc
      241 gacaggttcc acacgttcgc gctccggccg ggcgtcgagc tgctgatgga ggcgaccggc
      301 ttcgacgcca ggcttgccgg gagcgatctc gtcgtcaccg gggagggccg gatcgacgct
      361 cagaccgcgt tcggcaagac ggcgctcggc gtcgcgcggc gggccgcaca ggcgggcgtc
      421 gcgtgcgtgg cggtcggggg cggcgtggtg cccgacggga tcgaggcgct cgccggcgtc
      481 ggcgcgatcg ccgtgccgat caccgagcac ccgcagtcgg tccaggccgc gatgggcgcc
      541 ggcaccgccc ccgtggaacg ctgtggcgag cggatcgcgc ggcttgcgtc gatctggctc
      601 gaatcggttc cccgctaggc ttcatgctgt cgccatgagc cccgtcaagg ccgccccgaa
      661 acgcccgcgg aagcgccggt tctcgaaccc cggccggacg tgggccaaga ccctcgagcg
      721 acaccggccc gggctcgtcc gctacgtcct cgacgagctc ggcgacgcct acggtcgccc
      781 ggtctgggag cggcggctgg acccgacgag cgagctcatc ctcacgatcc tgacccagaa
      841 cagcgccgac accaacgccg aggtcgcgtt cgaggcgctc cgccagcggt acccctcggg
      901 cggagtggtc caggcgcaca acccgggggc cggctggggc ggcgtgggcc tgcccgacgg
      961 atcggccccg gattgggccg cggtggagca ggcgccgctc cccgagctgg tcgacacgat
     1021 ccggcccggc ggcctggcca accagaaggc gccgcggatc caggccaccc tgcgccggat
     1081 ccgcgaggaa cgcggcgact actcgctcga cttcctcgcc gacatgagcg cgctcgacgg
     1141 ccgggcgtgg ctgacgagca tcgacggtgt cggcaagaag accgcctcga tcctgctgct
     1201 cttctcgttc ggcctgccgc tcttcccgat cgatcgccac gtcgagcgcg tcgcccgacg
     1261 cgtcggcctg gtcggtccga aggtcagcgt cgacgacgcc cacgacctct tcctcggcat
     1321 gctccagccc gatgagatgt acgaggcgca cgtcaacctg atccagcacg gccggaagat
     1381 ctgccatgcc cagcggccgg agtgcggtcg ctgcccgatc cgcgcccgct gccggtatgt
     1441 cgacccgaag gcgccctgaa ccgccggtcg ccactgctat cctcggcgca tgttcagcgg
     1501 cggacccggc gttgccttcg gagcgcaatc gccgcgcatc ctgatcgtcg acgacgatcc
     1561 gaacctgctg gtgctcctcg ccgagcagct ccgcgccgac ggctacgaga cgatgaccgc
     1621 ccgggacggc accgaggcgc tccgccggct gcagacctcg tggccggacc tcctgatcat
     1681 cgacatgatg atgccgcgga tggacggcct gtcgctggcc cgcgagatca agtcgcgcgc
     1741 cgatctcccg atcatcgtcc tgtccgcgat cgacgccggc gactcgaaag ccgacctgct
     1801 cgaggaggtc gccgaggact acgtcaccaa gccctaccac taccccgagc tgcgcgcccg
     1861 gatcaaccgc gtgctgcggc ggctcggcga caaggtcccg cgccagagcc tggtcctggg
     1921 gcccgacctc acgctcgacc tccatcgacg cgaagccacc gtcgcgggga ccgtcgtcgc
     1981 gctcaccccg accgaatcgc gactcctcta cgccctggcg gccaacctcg gccagacggt
     2041 gatgaccgag acgctgctgg cccgcggctg ggccgagacc gaggatgccg acccctccta
     2101 cgtctgggtc acgatgcgac ggctccgcca gaaggtggag cgggatccga accatcccgt
     2161 ccatctccag acggttcgcg gcgtggggta tcggctggtc tcgaccgctc cggaacccag
     2221 cccggcaccc ggagcgccgc cggcgccggc gccgaccgat ggctgaagac ggcgacgacg
     2281 tcgcccgagg gctcagcttc cggacccgcc tgaccctcgc gctggtcctg tcggcggtgc
     2341 tgccgatgac cgcct
//
LOCUS       DATDDI010000660         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_97495, whole genome shotgun sequence.
ACCESSION   DATDDI010000660 DATDDI010000000
VERSION     DATDDI010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97495"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1226
                     /locus_tag="VIU37_09490"
     CDS             108..1226
                     /locus_tag="VIU37_09490"
                     /inference="COORDINATES: protein motif:HMM:NF041359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntG family PLP-dependent aldolase"
                     /protein_id="HEY6014231.1"
                     /translation="MTLIDLRSDTVTRPSPQMRRAMADAEVGDDVFGDDPTVNALEER
                     AAELLGKEAGLFVASGTMGNLVAQLAHLARGQETIGGREHHLVIDEAAGHAVIVGTSI
                     RSLEDNPDGTMDLDAIDAAFRDPGDPHEPISGLVTIENTHAHSMGQPLTPEYTRRVAA
                     IAHAHGVPLHVDGARFWNAVVAQGVKATDLSGPADTVTFCLSKGLACPVGSVLVGSRD
                     VIWRARRGRKLVGGGMRQAGILAAAGLLALSDGPDGMIDRLAEDHANARRLAEALSGM
                     DGIVSAGGTTQPTPGPLDPGRVRTNFVVFKVERDRAAFLEALRTRGVLMVEYPHGQVR
                     AVTHYGVTAADIETTIEATRAALAETLPRATAGSLVTA"
     gene            1238..>1705
                     /locus_tag="VIU37_09495"
     CDS             1238..>1705
                     /locus_tag="VIU37_09495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEY6014232.1"
                     /translation="MTDGDFQRILPRPAPAPDRGPLDERFYDLVETRFVRLVRDNPVL
                     GTSLGLHQDDDLLGDGSRDAVLGELAADREHLARIEALDPAGLSAGVRFERELELHNL
                     RRAIFDTDVLRLWERRSLALDTVGDGLFLLFARDHAPLAERLSAISGRLEAIGT"
BASE COUNT          239 a          648 c          597 g          221 t
ORIGIN      
        1 caccacgggt ccagttgtgg cgatggcgga gcatagcaga ggcgccgggc gttgtcgcac
       61 acgggccgaa cggcctgggt cgagagcctc gcctatactc gcgggccatg accctcatcg
      121 acctccgcag cgacacggtc accaggccct cgccccagat gcgccgcgcg atggccgacg
      181 ccgaggtcgg cgacgacgtc ttcggcgacg acccgaccgt caatgccctc gaggagcgcg
      241 ccgccgagct gctcggcaag gaggccgggc tgttcgtggc gtcgggcacg atgggcaacc
      301 tcgtcgccca gctcgcccac ctcgcgcgcg gccaggagac gatcggcggg cgtgagcacc
      361 acctcgtcat cgacgaggcc gccggtcacg ccgtgatcgt cgggaccagc atccgttcgc
      421 tggaggacaa cccggacggc acgatggacc tcgacgccat cgacgccgcc ttccgcgatc
      481 cgggcgaccc gcacgagccg atcagcggcc tggtgacgat cgagaacacg cacgcccatt
      541 cgatgggcca gccgctgacc cccgagtaca cgcgccgggt cgcggcgatc gcccacgccc
      601 acggggtgcc gctccacgtc gacggggcgc gcttctggaa cgcggtcgtc gcgcagggtg
      661 tcaaggcgac ggacctgtcc ggaccggcgg acaccgtgac gttctgcctc tcgaaggggc
      721 tcgcctgccc ggtcggatcc gtcctggtcg gcagtcgcga cgtgatctgg cgggcgcgcc
      781 gaggccgcaa gctcgtcggc ggcgggatgc gccaggccgg gatcctcgcc gcggccgggc
      841 tcctggccct gtccgacggc ccggacggca tgatcgaccg cctcgccgag gaccacgcga
      901 acgcacgccg gctggccgaa gcgctcagcg gcatggacgg catcgtctcc gccggcggaa
      961 ccacccagcc gacgccgggc ccgctcgacc ccggtcgcgt ccgcacgaac ttcgtggtct
     1021 tcaaggtcga gcgcgaccgg gcggccttcc tcgaggcgct caggacgcgt ggcgtgctga
     1081 tggtcgagta cccgcatggc caggttcgcg cggtcaccca ttacggcgtc acggccgcgg
     1141 acatcgagac cacgatcgag gccacccgcg ccgcgcttgc cgagacgctg ccccgcgcga
     1201 ccgccggttc gctggtcacg gcctgacgat cccgacggtg acggacgggg acttccagcg
     1261 gatcctgccg cgcccggcgc cggcgccgga ccgcggcccg ctcgacgagc ggttctacga
     1321 cctggtcgag acgcgcttcg tccggctcgt ccgcgacaac ccggtcctgg gcacgtcgct
     1381 gggcctccac caggacgacg acctcctggg tgacgggagc cgcgacgcgg tgctcggcga
     1441 gctggcggcc gaccgcgagc acctcgcccg catcgaggcg ctcgatccgg ccgggctgtc
     1501 ggcgggcgtc aggttcgagc gcgagctcga gctccacaac ctgcgccggg ccatcttcga
     1561 caccgacgtc ctgcgactct gggaacgccg ctcactggcg ctcgacaccg tcggcgacgg
     1621 cctcttcctg ctgttcgccc gcgaccacgc gccgctcgcc gaacgactgt ccgcgatctc
     1681 gggccggctc gaggcgatcg ggacg
//
LOCUS       DATDDI010000661         1911 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_77016, whole genome shotgun sequence.
ACCESSION   DATDDI010000661 DATDDI010000000
VERSION     DATDDI010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77016"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VIU37_09500"
     CDS             complement(<1..394)
                     /locus_tag="VIU37_09500"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEY6014233.1"
                     /translation="MHDLDLAAGGSGDLAIDVAMMTRVEGEGSLRLRVRNGVVEEAKL
                     EIFEAPRYFEQLVIGRTPDEVIDIVARICGICPIAYQMTAVHAFEHGLGIEVDPQVRA
                     LRRLMYCGEWIESHALHIYLLHLPDFLGY"
     gene            complement(387..1247)
                     /locus_tag="VIU37_09505"
     CDS             complement(387..1247)
                     /locus_tag="VIU37_09505"
                     /inference="COORDINATES: protein motif:HMM:NF013242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014234.1"
                     /translation="MTAPLPVEHEHQSPRATAQKRPRVGVVKFASCDGCQLTLLDLED
                     ELLAVAEKVDIVEFAEATSRRSGGPFDVLFVEGSISAPEQVDEIIKLRAVTKMLVTIG
                     ACATAGGIQAIRNWFDHEEIRHAVYADPRYVESLATSKPVADYVAVDAELRGCPISPA
                     QLKEFLTALVTGRRPQLPDEAVCLECKRRNVVCVAVARGIPCLGPVTRTGCGALCPAY
                     GRGCYGCFGPRESANTTSLAAWFADGRNATEVSRLFSGFTAWSEPFKKIIDANGGPPR
                     LAAPSETPDA"
     gene            complement(1247..>1911)
                     /locus_tag="VIU37_09510"
     CDS             complement(1247..>1911)
                     /locus_tag="VIU37_09510"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HEY6014235.1"
                     /translation="PPISISRIRPDGLDLTIRSVGPATAALTNLTSGAQVSLRGPLGR
                     GWPIEAAFGRDVVIVAGGIGLAPLRPLIDAIVAERPRFGAVRLYLGARTPRDRLFVAE
                     MNALAGRTDLEVEEIVDRAGPEWQGKVGIVTQLFDHAPWDGTRATAFMCGPERMMTAT
                     ANTLEHRGVTDENCWLTLERNMACGVGTCGHCQLGPFFVCRDGPVFSLAELGSAFGRE
                     GL"
BASE COUNT          290 a          657 c          697 g          267 t
ORIGIN      
        1 cgtagcccag gaagtcgggc aggtggagca ggtagatgtg gagcgcgtgg ctctcgatcc
       61 actcgccaca gtacatcagc cggcgcagcg cacggacctg cggatcgacc tcgattccga
      121 ggccatgctc gaaggcatgc accgcggtca tctgataggc gatcgggcag atgccgcaga
      181 tgcgggcgac gatgtcgatg acctcgtcgg gcgtgcggcc gatgaccagc tgctcgaagt
      241 agcggggcgc ctcgaagatc tcgagcttgg cctcctcgac gacgccgttg cggacgcgca
      301 gccggagcga tccctcgccc tcgacgcggg tcatcatggc gacgtcgatg gccaggtcgc
      361 cgcttccgcc agcggccagg tcgaggtcat gcatcggggg tctccgaggg cgcggccaac
      421 cgcggcgggc cgccgttggc atcgatgatc ttcttgaagg gctccgacca ggcggtgaag
      481 ccgctgaaca gccggctcac ctcggtcgcg ttgcggccgt ccgcgaacca cgcggccagc
      541 gaggtcgtgt tggccgactc gcgtggcccg aagcagccgt agcaaccgcg cccataggcc
      601 gggcagagcg cgccgcagcc ggtcctggtg accggcccga ggcacgggat cccgcgggcg
      661 acggcgacgc acaccacgtt gcggcgcttg cactcgaggc agaccgcctc atcgggcagc
      721 tgcgggcgcc ggccggtgac cagcgcggtg aggaattcct tcaactgggc gggcgagatc
      781 gggcagccgc ggagctccgc gtcgacggcc acgtagtcgg cgaccggctt cgaggtcgcc
      841 agcgactcca cgtagcgcgg gtccgcgtag accgcgtgcc ggatctcctc gtggtcgaac
      901 cagttgcgga tcgcctggat gccgccggcc gtggcacacg cgccgatggt caccagcatc
      961 ttggtgacgg cgcggagctt gatgatctcg tcgacctgct cgggggcact gatcgagccc
     1021 tcgacgaaga gcacgtcgaa cgggccgccg gaccgccgcg aggtggcctc ggcgaactcg
     1081 acgatgtcga ccttctcggc gaccgcaagg agctcgtcct cgaggtcgag cagggtgagc
     1141 tggcagccgt cgcacgaggc gaacttgacc acgccgacgc gcggccgctt ctgggccgtg
     1201 gcccggggcg attggtgctc gtgctcgacc ggcaacgggg cggtcatcac agtccctccc
     1261 gaccgaacgc gctgcccagt tcggccagcg agaagacagg tccgtcacgg cagacgaaga
     1321 atgggccgag ctggcagtgg ccgcaggtgc cgaccccgca ggccatgttc cgttcgagcg
     1381 tcagccagca gttctcgtcg gtgacgccgc ggtgctcgag ggtgttggcc gtcgcggtca
     1441 tcatccgctc ggggccgcac atgaacgcgg tcgcccgggt cccgtcccac ggcgcgtggt
     1501 cgaacagctg ggtcacgatg ccgaccttgc cctgccattc cggcccggcc cggtcgacga
     1561 tctcctcgac ctcgaggtcg gtccggccgg cgagggcgtt catctccgcg acgaacagcc
     1621 ggtcgcgcgg agtccgcgca cccaggtaca ggcggacggc gccgaacctc ggtcgctcgg
     1681 cgacgatcgc gtcgatcagg ggtcggagcg gggccagccc gatcccaccg gcgacgatga
     1741 cgacgtcgcg cccgaacgcc gcctcgatcg gccagccgcg cccgagcggg ccgcgcagcg
     1801 acacttgggc gccgctggtc aggttggtca gggcggccgt ggccggaccg accgaccgga
     1861 tcgtcaggtc gaggccgtcc ggccggatcc gcgagatgga gatcggcggg a
//
LOCUS       DATDDI010000662         3792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_617617, whole genome shotgun sequence.
ACCESSION   DATDDI010000662 DATDDI010000000
VERSION     DATDDI010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617617"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..543
                     /locus_tag="VIU37_09515"
     CDS             199..543
                     /locus_tag="VIU37_09515"
                     /inference="COORDINATES: protein motif:HMM:NF018574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HEY6014236.1"
                     /translation="MAGTAGDRSTLDRLRASGVDMSRLRDVAHTLQLPNESSARLAAE
                     AVRQPERTVVIGPFGDSSGCPVIVFVQQPLTLDAIETLRNEYRAIATDLGGSYEGWSL
                     ATHEYQGDEEDG"
     gene            540..1301
                     /locus_tag="VIU37_09520"
     CDS             540..1301
                     /locus_tag="VIU37_09520"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014237.1"
                     /translation="MNQAVTSRTATPAPVQPAPGALRLQNVTKVYGSGEVAVRALRGV
                     SLDVPSGQFVVVLGPSGSGKTTLMNVIGGMEPPTAGLVEVAGRELSGLDEQGLTAYRR
                     DALGFVFQFFNLVPTLTALENVQLVAELVGKSSPAVSAEALSAVGLDGRADHFPAAMS
                     GGEQQRVAMARAIVKDPPILLCDEPTGSLDLETGRQVLAVLRRISRDHGCTVVLVTHN
                     SAIAAMADRVLRMRSGAIVEDRRINNPVEPDDVQW"
     gene            1298..3679
                     /locus_tag="VIU37_09525"
     CDS             1298..3679
                     /locus_tag="VIU37_09525"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY6014238.1"
                     /translation="MRLLRRSLWRDLAGRRAQFAAIGVTIVLGVALFGASYDAFQNLT
                     ASYQRLYDELDFADLTVAGGPTEAIAARLAAEPGVDAVATRTVADVPIDVAGHRFVGR
                     VIGLPADGEPAVDRVRVLRGRGIDPSQPDGVLIEQHMAATFHLEPGGQIKVLGATGWR
                     QATVLGVVASPEYLWPARSRQEVLVPFDEFGVVFGLEPFASSSAGSTHTEALVRVAAG
                     APAGTVDRLADLAIGAGASSTMTRTEQPSDATLQEDVNGFGELSLAFPLLFLGAGALA
                     MSVLLGRMVATHRAQIGVLRATGFGRRTILGHYLGFGLLIGLAGSIPGAILGGLAAAL
                     ITELYTSVLSIPTSVVDVRPATLAIGLLIGPVAGGLAAVGPARRAASISPAEAMRGAA
                     PVGRGTISLGERLLPPLRRLPIRWRLALRGLGRNRRRSLSTVLGIALATSLIFVSWAM
                     IDTMQVLLDRQFVTIQREDATVVLGQPAPASTVAEAVRVDGLAASEPELDEAATLVGG
                     SNRYATTLVGLAPATTMRDLTDAAGHPLALTDGDLILGAALQAKLGLRVGDPVTVEIA
                     ASGAQAAGAATATLRVGGFVDEPFGSYAYGNLATVARAAGLSPADPPVAMALVRYEPG
                     VDRHLVRDRLAALPGVAAVVDSRALYDTAQSFMGLFYVFVGVMLVLGGIMAFALIFNT
                     LSANVMERAVELTALRTLGMTSATIGRLVTAENLLLTVVALIPGLLVAYLLAAEFMAS
                     FSSDLFQFDLAVRPTTFLGTSAAIVVVALLSQWPSLRAVSRLDLARVVRERAT"
BASE COUNT          520 a         1312 c         1326 g          634 t
ORIGIN      
        1 tcggtcagcg cccgggtcgt gatcgcgaca ccagcgacga acagtcgttc cagcaagtcg
       61 gcgagcgggt cggtcatggc tgagagcata gacgaatagt tgccaggtgg ctatcatctg
      121 gcttgcccaa gcacgactgg accggaggga tgcgagcttg ccgacgccgg aggatcccca
      181 tcaaggtggt ctgccgacgt ggccggaaca gccggagatc gctcgaccct ggatcgcctg
      241 cgagcgtccg gcgttgacat gagccgactc cgcgatgttg cccacaccct ccagctacca
      301 aacgaatcat cggcacgact cgccgccgag gcggtgcgcc agccagagcg caccgtcgtc
      361 atcggcccat tcggcgactc ctcgggatgt ccggtgatcg tgttcgtgca gcagccgctg
      421 accctcgacg cgatcgagac cctgcggaac gaatacagag cgatcgcaac ggatctcggc
      481 ggctcctacg agggctggtc gcttgcgacg cacgagtacc agggggatga ggaggacgga
      541 tgaaccaggc ggtcaccagc aggactgcga caccggcacc cgtccagccg gcgcccgggg
      601 cgctccggct gcagaacgtc accaaggtct acggatcggg cgaagtagcc gtccgtgctc
      661 tccgaggcgt gtcgctcgac gtcccgagcg gccagttcgt cgtggtcctg gggcccagcg
      721 gctccggcaa gaccacgctg atgaacgtga ttggcgggat ggaaccgcca accgccggat
      781 tggtcgaggt cgcggggcgg gagctgtcgg gactcgatga gcagggcttg acggcgtacc
      841 ggcgcgatgc actcggcttc gtcttccagt tcttcaacct ggtgccgacg ttgacggccc
      901 tggaaaacgt ccagctcgtg gcggagctcg tcggcaagtc gtcgccggcc gtgtcggcgg
      961 aggccctgtc agccgtcggc ctcgacggcc gcgccgatca cttccctgcc gccatgtcgg
     1021 gtggcgagca gcagcgcgtc gcgatggcgc gggcgatcgt caaggatccg ccgatcctgc
     1081 tgtgcgacga gccaacgggc tcgctcgacc tcgagaccgg ccgccaggtg ctcgcggtgc
     1141 tccgacggat cagtcgagat cacggctgca cggtcgtcct ggtcacccac aactcggcga
     1201 tcgccgcgat ggccgaccga gttctccgca tgcggtcggg cgcgatcgtc gaggaccgcc
     1261 ggatcaacaa cccggtcgaa cccgacgatg tccagtggtg aggctccttc ggcgatcgct
     1321 ctggcgcgac ctggccgggc gccgggcgca gttcgcggct atcggcgtga ccatcgtcct
     1381 cggcgtggcg ttgttcgggg cctcgtatga cgccttccag aacctgaccg cctcgtacca
     1441 gcgcctgtat gacgagttgg atttcgctga tctcacggtc gccggcggtc cgaccgaggc
     1501 gatcgccgcc cgcctggccg cggagccggg cgtggacgcc gtcgcaacca ggacggtcgc
     1561 cgacgtgccg atcgacgtgg cgggacaccg cttcgtcggt cgggtcatcg gcctgcccgc
     1621 ggacggggag cctgccgtcg atcgggtgcg ggtgctgcgc ggccgcggga tcgatccgtc
     1681 gcagccggac ggtgttctca tcgagcagca catggccgcc acgttccacc tcgagccggg
     1741 cggccagatc aaggtcctcg gcgccaccgg ctggcggcag gcgacggtcc tcggcgtcgt
     1801 tgcgtcgccg gagtacctgt ggccggcccg cagtcggcag gaggtgctcg tcccctttga
     1861 cgagttcggg gtcgtctttg ggctcgagcc cttcgcatcg tcgtcggccg gctcgaccca
     1921 cacggaggcg ctcgtccgag tggcggccgg cgcaccagcg ggcacggtcg atcgactcgc
     1981 cgacctcgcg atcggagccg gcgcatcctc gacgatgacc cgcaccgagc agccgtcgga
     2041 cgcgacactc caggaggacg tgaacggctt cggcgagctc tcgctggcgt tcccgttgct
     2101 gttcctgggc gccggtgccc tggcgatgtc cgtgctgctc gggcggatgg tggcaacgca
     2161 tcgggcacag atcggcgtgc tacgcgccac cggctttggg cgccgtacga tcctcggcca
     2221 ctacctcggg ttcgggctcc tcatcggcct cgccgggtcg atcccgggcg cgatcctcgg
     2281 cggcctggct gcggcactca tcaccgagct ctacaccagc gtgttgtcga tcccgaccag
     2341 cgtcgtcgac gttcgccctg ctacgctcgc gatcgggttg ctcatcgggc ccgtggccgg
     2401 ggggctggca gccgtcggcc cggcacgtcg ggccgcatcg atcagcccgg ccgaggcgat
     2461 gcgcggtgcc gcgccggtcg ggcgcggcac gatcagtctc ggcgagcggc tgctgccgcc
     2521 cctgcgtcgc ctcccgatcc ggtggaggct ggctctgcga ggcctcggcc gcaaccgacg
     2581 acgaagcctg tcgaccgtgc tcgggatcgc cctcgcgacc agcctgatct tcgtgtcctg
     2641 ggcgatgatc gacacgatgc aggtcctgct ggaccgccag ttcgtgacga ttcagcgcga
     2701 ggacgcgacg gtggttctcg gccagcccgc accggcgagc acggtcgccg aggccgtccg
     2761 ggtcgatggg ctcgcggcgt ccgagcccga gctcgacgag gccgccacgc tggttggtgg
     2821 ctcgaaccgc tacgcgacga cactggtcgg tctcgcgcca gcgacgacga tgcgagacct
     2881 gaccgacgcc gcgggccacc cactggcgct gacggacggt gatctgatcc tcggcgccgc
     2941 cctccaggcc aagctcggtc tccgcgtcgg cgacccggtc accgtcgaga tcgcggcgag
     3001 cggcgcacag gctgcgggcg ccgcgactgc caccctccgc gtcggcggtt tcgtcgacga
     3061 gccgttcggc tcgtacgcgt acgggaatct tgcgacggtt gcccgggcgg ccggactgtc
     3121 gcccgcggat ccaccggtgg cgatggctct tgtcaggtac gaacccggcg tcgaccgcca
     3181 tctggtccgc gatcggcttg cggcgttgcc gggggtcgcc gccgttgtcg acagccgcgc
     3241 gttgtacgac acggcccaat cgttcatggg cctcttttac gtgttcgtcg gggtcatgct
     3301 cgtgctcggc gggatcatgg ccttcgcgct catcttcaac acgctgtcgg cgaacgtgat
     3361 ggagcgcgcc gttgagctga ccgcccttcg gacgcttggc atgacgtcgg cgacgatcgg
     3421 gcggctggtg acggccgaga acctcttgct caccgtcgtc gccctgatcc caggcctcct
     3481 cgtcgcctac ctgctggcgg ccgagttcat ggcctcgttc tcgagcgacc tgttccagtt
     3541 cgatctggcc gtccggccaa cgacgtttct cggcacttcc gccgcaatcg tcgtcgttgc
     3601 gctgctgtcg cagtggccgt cgctgcgggc ggtcagccgt ctcgacctgg cgcgcgtcgt
     3661 ccgcgagcga gcgacctgag cgacccagcc gaggacgccg gctgatcgtc gcacgaggac
     3721 cagcgtcgtc gcctgggtgt cctatgggcc ggtagcatct cggcttgtcg agcaagcggt
     3781 acgcggatgg ac
//
LOCUS       DATDDI010000663         2536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_701117, whole genome shotgun sequence.
ACCESSION   DATDDI010000663 DATDDI010000000
VERSION     DATDDI010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701117"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VIU37_09530"
     CDS             complement(<1..638)
                     /locus_tag="VIU37_09530"
                     /inference="COORDINATES: protein motif:HMM:NF025091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HEY6014239.1"
                     /translation="MADNRVAPRHGGSSWSAREATMDATGNWTGRRDRFRELHAEGVF
                     IMPNPMDVGAARLLVSMGFPALATTSSGHAASLGRSDYRIRRDEMLAHVAVMAASVPV
                     PLNVDSERCFADDPAGVAETVELIAAAGASGCSIEDFDPVTAAIDPLETAVERVAAAA
                     RAARRHGVVLTARAENHLHGIDDLDDTITRLRAYRDAGAEVVYAPGLADADQ"
     gene            793..1257
                     /locus_tag="VIU37_09535"
     CDS             793..1257
                     /locus_tag="VIU37_09535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014240.1"
                     /translation="MSTQSATARTFGAIPRPELDLAGKVCLIVLAILAIGALGGAAFL
                     VTSPDGSSMQWDVSMLAGSPFPDFFVPGLILGGLFGLGSLAVAAMGVARLRIAPFLAF
                     AIGCGQMIWIVIELAIIGQFSFLHPTCFGLGLAIAASAMRWGWPTFEAWRRA"
     gene            1436..2311
                     /locus_tag="VIU37_09540"
     CDS             1436..2311
                     /locus_tag="VIU37_09540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014241.1"
                     /translation="MRFTGSTRPPFGSAAYLLSVLLVVDAIVATIASLGWPDLIHGPA
                     VSVGSLRGTALVVLVVALPVLVASMVAARRGAGLAVVGWLGALGYVTYQGILFLFGSP
                     FNGLFLFYVGMLSFGLWAVIALVPRVDVAAFAAKFDGRTPVRAIGGFLVVLAGAFYLL
                     WLRAIVPALFDSEQPAFLVGTGMITGAGQVIDLSFALPITVLAAVTIWQRRTWGYLLA
                     GVMLVMLGIESISIGVDQWFGAMADPDSPVVSAAFLPAFLVIAAIDFALFGLYARAAQ
                     PESTTRDVRVPRAAR"
BASE COUNT          300 a          923 c          889 g          424 t
ORIGIN      
        1 atctggtcgg catccgccaa ccccggcgcg tagacgactt cggcgcccgc gtcgcggtac
       61 gcccggagcc gggtgatcgt gtcgtcgagg tcgtcgatcc cgtggaggtg gttctccgcg
      121 cgggccgtca gcaccacgcc gtgccggcgg gccgcgcggg ccgccgcggc gacgcgttcg
      181 acggcggtct cgagcggatc gatcgcggcc gtgaccggat cgaagtcctc gatcgagcag
      241 cccgacgccc cggcggcggc gatcagctcg acggtttcgg cgacgcccgc gggatcatcc
      301 gcgaagcacc gctccgagtc gacgttgagg ggcacgggga cggatgccgc catcacggcg
      361 acgtgggcca gcatctcgtc gcgccggatc cggtagtcgg agcgaccgag cgacgcggca
      421 tggcccgagc tcgtcgtcgc cagcgccggg aagcccatgg acacgagcag ccgagcggcc
      481 ccgacgtcca tcgggttcgg catgatgaag acgccctcgg cgtgaagctc cctgaagcgg
      541 tcccgccggc cggtccaatt ccccgtcgcg tccatggtcg cctcccgcgc gctccagctg
      601 ctgccgccgt gccgcggcgc gacgcgattg tcggccatcg gggacctgca gatcgaggcc
      661 ggcgacacgt gggcctgtcg ccgacctggg acgactcacg gaacgcccgg aacgggtcgg
      721 ttggctctgg cggcggtgac gacccgtctg gcctactcgg agccgacgga aaccacgacc
      781 acggagtcag ccatgtccac gcagtcggcc accgcccgca cgttcggcgc catcccgcgg
      841 cccgagctcg atctcgccgg gaaggtctgc ctgatcgtcc tggcgatcct ggcaatcggc
      901 gcgctgggag gagcggcgtt cctggtcacc tcgccggacg gcagctcgat gcagtgggac
      961 gtgtccatgc tggccggcag tccgtttccg gacttcttcg tccccgggct gatcctgggt
     1021 gggctgttcg gcctgggctc gctggcggtc gcggcgatgg gcgtggccag gctccggatc
     1081 gctcccttcc tggcgttcgc gatcgggtgc ggccagatga tctggatcgt gatcgagctc
     1141 gcgatcatcg gccagttcag cttcctgcat ccgacctgct tcgggctggg gctcgccatc
     1201 gcggcgtctg cgatgcgctg gggatggccg acgttcgagg cttggcggcg cgcctgatga
     1261 gagccggcgc cccgcgaacc tgcggggccg cgtgccatcc agcctcgggg atgaggacaa
     1321 acggccgtcg ccgctgacat cggcccgcgg cacgatggtg gctgcgggtg aggttcgccc
     1381 gtggcgcgac tcgaaacctc gtggatcgcg tgtcagccga tcaccgggag tccagatgcg
     1441 cttcaccgga tcgacccggc cgcccttcgg gtcggccgcc tacctcctgt ccgtcctgct
     1501 ggtcgtcgac gcgatcgtgg cgacgatcgc ctcgctcggc tggcccgacc tgatccacgg
     1561 acccgcggtc agcgtcggct cgctgcgcgg caccgcgctt gtcgtcctcg tcgtcgcgct
     1621 gcccgtcctg gtcgcgtcga tggtcgccgc gcgccgtggg gcgggtctcg ccgtcgtcgg
     1681 ctggctcggc gcgctcggat acgtcaccta ccagggcatc ctgttcctgt tcgggtcccc
     1741 gttcaacggc ctcttcctgt tctacgtcgg catgctgtcg ttcgggctgt gggccgtgat
     1801 cgcactcgtc ccacgggtgg acgtggccgc cttcgcggcg aagttcgacg gccggacccc
     1861 ggtccgggcc atcggggggt tcctcgtcgt cctcgccggc gccttctacc tgctctggct
     1921 cagggcgatc gtcccggccc tgttcgacag cgagcagccg gcgttcctgg tcggcaccgg
     1981 catgatcacc ggcgcggggc aggtcatcga cctgtcgttc gcgctcccga tcaccgtcct
     2041 ggccgccgtg acgatctggc agcgaaggac gtggggctac ctgctggccg gggtgatgct
     2101 cgtcatgctc gggatcgaga gcatcagcat cggcgtcgac cagtggttcg gggcgatggc
     2161 cgaccccgac tcgcccgtgg tgtcggcggc gttcctgccc gccttcctcg tgatcgcggc
     2221 catcgacttc gcgctgttcg ggctgtacgc ccgcgccgcg cagccggaat ccacgacacg
     2281 cgacgttcgg gtgcccaggg ccgctcggta acgacgtacg ggccatccgg caccgcgcgc
     2341 ttcgggaccg atggcacatc cggccctccc cgcccgtcgg gcatcgttgc cggcaaggga
     2401 tggacgcttc tccccccgag cgcccgatcc gaccctccgg gagcgggacc cacgccagtg
     2461 gtcccgctcc cttcccatct ccgggccacg tcccatcgcc tgacgctcgc gccgcctcga
     2521 ccagcgaggc tgcaag
//
LOCUS       DATDDI010000664         5266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_493015, whole genome shotgun sequence.
ACCESSION   DATDDI010000664 DATDDI010000000
VERSION     DATDDI010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5266
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493015"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1004)
                     /gene="dprA"
                     /locus_tag="VIU37_09545"
     CDS             complement(<1..1004)
                     /gene="dprA"
                     /locus_tag="VIU37_09545"
                     /inference="COORDINATES: protein motif:HMM:NF014533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HEY6014242.1"
                     /translation="MLGVGATGPTAADAASGSEPAGRALAAPPGALDMSERDAWAVLT
                     CVDGLGPVGMAALLRRYGSGVAILREASTPRGAGHLAAPSTDEADPSGPPRRPVLPAV
                     AEAIVAAAQRAAVTLGRINGLGLQVVTVADPAYPSRLAAIAMPPHVLFVLGDTAALQV
                     HAAIAVVGTRKATNPGRATAARIATGLVASGAAVVSGLATGIDGAAHAAAIHAGGITV
                     AVIGSGHAQLHPRIHERLAASIARSGGAVVSELAPDVRPTQGTFPRRNRVISGLADAT
                     VVVEAPARSGALITASWALEQGRPCFLVPGAIDAPASAGCLSFLRDYAEAGARIVSGI
                     P"
     gene            complement(1004..2590)
                     /locus_tag="VIU37_09550"
     CDS             complement(1004..2590)
                     /locus_tag="VIU37_09550"
                     /inference="COORDINATES: protein motif:HMM:TIGR00368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEY6014243.1"
                     /translation="MLAIVPSATLHGLDGRLIRVEVDVAPGLPGFTIVGLADAALQEA
                     RERVRGALRNAGFVHPPRRITVNLAPADLRKAGASLDLAMAIGILLGSEQVRAAPGRV
                     ALIGELSLGGEVRPVPGILPMVAGLVRRGIARVVVAGAAVDEARLAGGAEVLGVETLA
                     EAVDLVRVRRRHRVVSSPARIELVETGRPAAEGIALRAADGDGAGGPPFPDLGEVRGQ
                     AEARRGLEIALAGGHGLLLIGPPGSGKTLLARTIPGLLPPLDDAAALAATVVASAAGE
                     GPIRALRRRPPFRSPHHTISYAAMVGGGPRLSPGEITLADQGVLFLDELPEFDRDVLE
                     ALRQPLEEGSVAIARAGRATVFPARFQLVAAMNPCPCGFAGTTDRACACRGREAERYQ
                     RRVSGPLRDRIDLWVTMPRVAPLALVGGRDPEGSKEVAGRVAAARHRAMGRAPGLLNG
                     RLTGRRLRQACGLSGPGERRVVQLAELERASGRGTERLLRVARTIADLAGAEHVSEAH
                     LDEAAWFRPSDQRLADAEAS"
     gene            complement(2717..3112)
                     /locus_tag="VIU37_09555"
     CDS             complement(2717..3112)
                     /locus_tag="VIU37_09555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014244.1"
                     /translation="MTHRYTILTGGLVLPSVQDAAVTAIAWAGDTVIALGSDEAMRGL
                     SRGDSWFVDLEGATVVPLADGDPAWPVATTLEIGGRADLAILATDPRLPHPADLGPSF
                     IAVVRAGRVVAGRLPGAAHEAHAEHLPGS"
     gene            complement(3146..4312)
                     /locus_tag="VIU37_09560"
     CDS             complement(3146..4312)
                     /locus_tag="VIU37_09560"
                     /inference="COORDINATES: protein motif:HMM:NF025001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY6014245.1"
                     /translation="MAAKILVVDDDPNVQRGLEYTLKQEGYDVVIASDGAEAFRLYGT
                     EAPDLVLLDVMLPKLDGYQVAEKIRADEAGTRHVPIIMLTAEREVEQKVRGLRAGADD
                     YLIKPFHPAELLARIKSLLARFAPRGALLARPPLGRILAFYGAKGGVGTTTIAINAAI
                     ALHRELGRKVCLVDGNLQFGDHRVFLDLGLDRKSIVDVVTAPAMDADLIKSTLVKHDS
                     GIDLLLAPPSPETAELVHPEHLPEIAEILAGMYDYVLIDIDKRLDDINLGVFEAAAVV
                     FVVMTADLSCLKNVRLILETMSHLGYPPAKTQLVLNRSNAFTGINVKNAEGALKRTID
                     HQVVNEYRGAISALNTGAPFMYGKADSALGGSVLQFARTVDKPVASATKAVAIR"
     gene            complement(4374..>5266)
                     /locus_tag="VIU37_09565"
     CDS             complement(4374..>5266)
                     /locus_tag="VIU37_09565"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6014246.1"
                     /translation="AHGRYPAGRRPDLERPGRHQVVRVRARDGLRLSGRWLEAEPGDP
                     SWALDPHEAIVLLHGWSGSVAPHLVEYGPFLRRTAGVLGLDSRGHGESDDSPTTFGLR
                     EVEDVAGALSWLGERGVERVALVGMSMGGITAIASVAVLGDGSLAGTDVDVAAPAFVP
                     SPRRPRIVAIVADSVSPDLPSVVVPSIPGPARRIVAARLFDAVAQTLGDDPRATEPIR
                     VIGLLEGVPLLLISGEADPIVTPEAARRLAAAAPPGTELRTVPGAGHRGAHAVDPGEY
                     ETRATRHLRDAFLGAREAAL"
BASE COUNT          743 a         1943 c         1949 g          631 t
ORIGIN      
        1 ggaatgccgg acacgatcct ggcacccgcc tccgcgtagt cgcgaagaaa ggagaggcaa
       61 ccggccgacg ccggggcgtc gatcgcgccc gggacgagga agcaggggcg cccctgttcg
      121 agcgcccacg acgcggtgat cagggcgccg cttcgggccg gcgcctcgac gacgacggtg
      181 gcgtccgcca ggcccgagat gacccggttc cgccgcggga acgtgccctg ggtcggccgg
      241 acgtccggtg cgagctccga cacgacggcg ccgcccgacc gggcgatcga ggcggccagg
      301 cgctcgtgga tccgcgggtg gagctgggcg tgaccggacc cgatgaccgc gacggtgatc
      361 ccgcccgcat ggatcgccgc ggcatgcgcg gcaccgtcga tccctgtcgc gaggcccgac
      421 acgactgcgg cgccggaggc gacgaggccg gtggcgatgc gggcggccgt cgcccggccc
      481 gggttggtcg ccttgcgggt cccgacgacg gcgatcgctg cgtggacctg cagggcggcc
      541 gtgtcaccga gcacgaacag gacgtgcggt ggcatggcga tcgctgcgag ccgtgacggg
      601 tacgccggat ccgcgacggt gaccacctgg agaccgagcc cgttgatgcg gccgagcgtc
      661 actgcggcgc gctgggcggc ggcgacgatc gcctcggcga ccgccggcag caccgggcgg
      721 cgcggcggtc cggagggatc ggcctcgtcg gtggagggcg cggccaggtg cccggcgcca
      781 cgcggcgtcg aagcctcccg gaggatcgcg acgcccgagc cgtaccgccg gagcagtgcc
      841 gccattccga ccgggccgag gccgtcgacg caggtgagga ccgcccacgc gtcgcgctcg
      901 gacatgtcga gcgccccggg cggcgcggcg agtgcccgac cggccggttc ggagccgctc
      961 gcggcatcgg ccgcggtcgg gccggtcgcc cccacgccga gcatcaggac gcctccgcat
     1021 cggccaggcg ctggtccgac ggccggaacc aggccgcctc gtcgaggtgc gcttcggaca
     1081 cgtgctcggc tcccgcaagg tcggcgatcg tcctggccac tcgcagcagg cgctccgtgc
     1141 cgcgcccgct ggctcgttcg agctcggcca gctggacgac ccgccgctca cccggtccgg
     1201 acaaaccgca ggcctgccga aggcggcggc cggtgagccg gccgttcagc agccccggcg
     1261 cccgtcccat cgcgcggtgt ctggccgcgg cgacccggcc ggcgacctcc ttggatcctt
     1321 ccgggtcgcg cccgccgacc agcgccagcg gcgcgacgcg cggcatcgtc acccacaggt
     1381 cgatccggtc gcgcagcggc cccgacacgc gacgctggta ccgctcggcc tcgcggcccc
     1441 ggcaggcgca ggcgcgatcg gtcgtcccgg cgaagccgca tgggcaggga ttcatcgcgg
     1501 ccacgagctg gaaccgcgcc gggaagaccg tcgcgcggcc ggcccgggcg atggccacgg
     1561 atccctcctc gagcggctgg cgcagcgctt cgagcacgtc gcggtcgaat tcgggaagct
     1621 cgtcgaggaa caggacgccc tgatcggcca gggtgatctc ccccggggag aggcgcggcc
     1681 cgccaccgac catggcggca tacgagatcg tgtggtgcgg ggaccggaag ggcgggcgcc
     1741 ggcggagggc gcggatcggc ccttcgccgg ccgcggaggc cacgaccgtc gccgccagcg
     1801 cggcggcgtc gtccagcggc ggcagcagcc ccgggatcgt tcgtgccagg agcgtcttgc
     1861 cggacccggg cggtccgatg agcagcagcc cgtggccacc cgctagggca atctcgaggc
     1921 cccggcgcgc ctcggcctga ccgcggactt cgcccagatc cgggaatggc ggaccgccgg
     1981 cgccatcgcc atcggcggcc ctcaacgcga tgccctccgc cgcgggacgg cccgtctcga
     2041 ccagctcgat ccgcgcaggc gacgacacca cgcgatgccg tcggcggacg cggaccaggt
     2101 cgaccgcctc ggccagcgtc tccaccccga ggacctccgc accgcccgcc aggcgggcct
     2161 cgtcaacagc cgcaccggcc acgacgaccc gcgcgatccc ccgccggacc agcccggcca
     2221 ccatcggcag gatcccgggg accgggcgga cttcgccccc gagcgacagc tcgccgatca
     2281 gcgcgaccct ccccggcgcc gcgcggacct gctcggaccc gagcaggatg ccgatcgcca
     2341 tcgccaggtc cagggaagcg ccggccttgc gcaggtcggc gggggcgagg ttgaccgtga
     2401 tccggcgcgg cgggtggacg aagccggcgt tccgcaaggc accgcggacc cgttcgcgcg
     2461 cctcctggag cgcggcgtcg gccaggccga cgatcgtgaa acccgggagc ccgggcgcga
     2521 cgtcgacctc gacccggatc agccggccgt cgagaccgtg cagcgtggcg gaggggacga
     2581 tggccaacac gcgccacagg ctaggggccg gccctcaccc ggcagtcaat cctgaatcac
     2641 cggcgactca ccaggggccc gggctgcgtc tggccggcgg gacgggtccc ggtgccggac
     2701 gtggcgggcg tcccgctcac gagcccggga ggtgctcggc atgggcctcg tgcgcagcgc
     2761 ccggcaacct gcccgcgacg acgcgtcccg cacggacgac ggcgatgaac gaagggccca
     2821 ggtcggcggg gtgagggagc cgcgggtcgg tcgccaggat cgccaggtcg gcccgtccgc
     2881 cgatctcgag cgttgtcgcg accggccagg cgggatcgcc atcggcgagc gggacgacgg
     2941 tggcaccctc gaggtccacg aaccaggagt cgccgcgcga caggccgcgc atcgcctcgt
     3001 cgctgcccag cgcgatgacc gtgtcaccag cccaggcgat cgcggtcacg gccgcgtcct
     3061 gcaccgaagg aaggacgagc ccgcccgtga ggatggtgta gcgatgcgtc acgtccggac
     3121 gccgcgacct gggcgacctc cccgatcagc ggatcgcgac cgccttggtc gccgaagcca
     3181 cgggcttgtc gacggtccgg gcgaactgga ggaccgagcc gccgagcgcg gaatcggcct
     3241 tcccgtacat gaacggcgcg cccgtgttga gcgcactgat cgcgccgcgg tattcgttga
     3301 ccacctggtg gtcgatcgtc cgcttgaggg cgccctcggc gttcttcacg ttgatcccgg
     3361 tgaacgcatt cgagcggttg aggacgagct gggtcttggc cggcgggtaa cccaggtgcg
     3421 acatggtctc gaggatgagg cgcacgttct tgaggcacga caggtcggcc gtcatcacca
     3481 cgaagaccac ggcggcggcc tcgaacacgc cgaggttgat atcgtcgagc cgcttgtcga
     3541 tatcgatcag cacgtagtcg tacatcccgg ccaggatctc ggcgatctcc ggcaggtgct
     3601 ccgggtgcac gagctccgcc gtctcgggcg agggcggcgc gagcagcagg tcgatcccgg
     3661 aatcgtgctt gaccagcgtc gacttgatca ggtcggcgtc catcgccggc gccgtcacga
     3721 cgtcgacgat gctcttgcga tccaggccca ggtcgaggaa gacgcgatga tccccgaact
     3781 ggaggttgcc gtccacgagg cagaccttgc ggccgagctc tcgatgcagc gcgatcgcgg
     3841 cgttgatcgc gatggtcgtg gtcccgacgc cgcctttcgc cccgtagaac gcgaggatcc
     3901 gaccgagcgg cggccgggcg agcagggcgc cacgcggcgc gaaccgggcc agcaggctct
     3961 tgatccgcgc cagcagctcg gccggatgga agggcttgat caggtagtcg tcggcgcccg
     4021 cccgcaggcc acggaccttc tgctcgacct cgcgctcggc ggtgagcatg atgatcggca
     4081 cgtgacgggt accggcctcg tcggcgcgga tcttctccgc aacctggtag ccgtcgagct
     4141 tgggcagcat cacgtcgagc agcaccaggt ccggggcttc ggtgccgtac aggcggaagg
     4201 cttcggcgcc gtcggacgcg atcacgacgt cgtacccctc ctgcttgagg gtgtactcca
     4261 gccctcgctg gacgttcggg tcgtcgtcga cgacgaggat ctttgccgcc atcagtcctc
     4321 ccacggagct cgccgggccg atcgcctccc cgaccgggag gccggcgcgg cgattatagg
     4381 gcggcctccc tggccccgag aaacgcgtcg cgcaggtggc gcgttgcacg tgtctcgtat
     4441 tcgccgggat cgacggcgtg cgcgccgcga tgcccggcgc ccggcaccgt ccggagctcg
     4501 gtgcccggtg gcgccgccgc cgcgaggcgg cgggccgcct cgggcgtcac gatcgggtcg
     4561 gcctcgccgg agatcaggag caggggcaca ccctcgagca ggccgatcac gcggatcggc
     4621 tcggtcgcgc gcgggtcgtc gccgagcgtc tgcgccaccg cgtcgaagag ccgcgccgcg
     4681 acgatccgcc gggcgggacc cgggatcgac gggaccacca ccgacggaag gtccgggctc
     4741 accgaatcgg ccacgatcgc gacgatccgg gggcgtcggg gcgacgggac gaacgcgggc
     4801 gcggcgacgt ccacgtcggt cccggccagg ctcccgtcac cgagaaccgc caccgaggcg
     4861 atggccgtga tgccgcccat cgacatcccg acgagggcga cgcgctccac gccccgctcg
     4921 cccagccagc tcagcgcgcc cgcgacgtcc tcgacctcgc ggagcccgaa ggtcgtcggc
     4981 gaatcgtcgg actcgccgtg gccccgggaa tcgagcccga gcacgcccgc ggtccggcgc
     5041 aggaacggcc cgtactcgac caggtggggc gcgaccgacc ccgaccagcc gtgaagcagc
     5101 acgatcgcct cgtgcggatc gagcgcccag gacgggtcgc cgggctcggc ctccagccat
     5161 cgcccgctca ggcgaagccc gtcgcgcgcc cggacccgga cgacctgatg ccgcccaggc
     5221 cgctcgagat caggacgtcg cccggctgga tatcgtccgt gcgcag
//
LOCUS       DATDDI010000665         1687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_97526, whole genome shotgun sequence.
ACCESSION   DATDDI010000665 DATDDI010000000
VERSION     DATDDI010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97526"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..514)
                     /locus_tag="VIU37_09570"
     CDS             complement(128..514)
                     /locus_tag="VIU37_09570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014247.1"
                     /translation="MRLQAWDLDLLGTQPPDDAFAETITNGQRFHATMKFADALFDQP
                     LEDQRTYFVHELLHLTHPGIEDPIRSGEWRQQIGQALYDHMWGEVKRGIEYMVDFVSR
                     LVARGLPLPPWAEPPPAELGEDVRPL"
     gene            complement(568..1305)
                     /locus_tag="VIU37_09575"
     CDS             complement(568..1305)
                     /locus_tag="VIU37_09575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014248.1"
                     /translation="MTRPTAVCGVCTAVNPIDLIELDTLMGDPAAWPASVWKTPGFAW
                     QVPKGDLPASYRRFGAVEMGVEWIRQHGYDEVDRRDVRRHYRFDVPKIAVTPDQLVAT
                     GLIARGNTSTNIARLNPLAYLDYYNTGIEVGLTGLQLIRDKIAALQAAGEQVPLALVK
                     MAIDAGKSLAMSQASIKARGYPWGDEDDDDGFRAGSAPEASPRMGSHRVRVIDGEARP
                     VRDRGPADRATYNERARQEGSPLLPER"
     gene            complement(1310..1618)
                     /locus_tag="VIU37_09580"
     CDS             complement(1310..1618)
                     /locus_tag="VIU37_09580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014249.1"
                     /translation="MSQDVVGQPRPVPTTGFRLPEHVRRAFSSRLMLQAPAGLAPEQI
                     AKLARELDSVVDGLDQGAFMALDAMRLLADQGNEVAKDLFDAMSADLGLTRPFSSYRR
                     "
BASE COUNT          246 a          560 c          609 g          272 t
ORIGIN      
        1 gcatgggcct cgagctgctc gtcggagagc atgaccccga agccgtcgaa tgccagccgg
       61 ccgaagtcct ggccgcacgc ctcagccagc tcgcgcagcc ggttgcggct gtagacgacc
      121 ggcccggtca cagcggtcgt acgtcctcgc ccagttcggc cggtggcggc tcggcccacg
      181 gcggcaacgg cagcccgcgc gcgaccagcc gcgagacgaa gtcgaccatg tactcgatgc
      241 cgcgtttgac ctcgccccac atatggtcgt acagcgcctg cccgatctgc tgccgccact
      301 cgcctgaccg gatcgggtcc tcgatgcccg ggtgggtcag atgcagcagc tcgtggacga
      361 aataggtccg ctggtcctcg agcggctggt cgaatagcgc atcggcgaac ttcatcgtgg
      421 cgtggaagcg ctggccgttg gtaatcgtct cggcgaaggc atcatccggc ggctgggtgc
      481 cgagcaggtc gaggtcccag gcttggaggc gcatcaggtt gcggagctca agaacgtatg
      541 ccctgatctg gtcagcctcg ggacgattca tcgttccggc agcagcggac tgccctcctg
      601 gcgagcgcgc tcgttgtagg tcgcccggtc ggccgggcca cggtcgcgca ccggccgggc
      661 ctcgccgtcg atgacccgga cccgatggct gcccatgcgc ggactggcct ccggcgcgga
      721 gccggcccgg aagccgtcgt cgtcgtcctc gtcgccccac gggtagccgc gcgccttgat
      781 cgaggcttgg ctcatggcca ggctcttacc ggcgtcgatg gccatcttca cgagagccag
      841 cggcacctgt tcgccagccg cctgcagggc cgcgatcttg tcgcggatga gctgcagccc
      901 ggtcaggcca acctcgatgc cggtgttgta gtagtcgagg taggcgagcg gattgagccg
      961 ggcgatgttg gtcgaggtgt tgccccgggc gatgaggccg gtggcgacga gctggtcggg
     1021 ggtcactgcg atcttgggca cgtcgaaccg gtagtggcgc cggacgtcgc gccgatcgac
     1081 ctcgtcgtag ccatgctggc ggatccactc gacgcccatc tcgaccgcgc cgaagcggcg
     1141 atacgaggct ggcaggtcgc ccttgggcac ctgccacgcg aagccggggg tcttccagac
     1201 cgaggccggc cacgcggccg ggtcgcccat gagtgtgtcg agctcgatca gatcgatcgg
     1261 gttgacggcc gtgcagacac cgcacaccgc agtcgggcga gtcatcggcc tagcgccggt
     1321 acgagctgaa cggacgggtc agaccgaggt cggcgctcat cgcgtcgaac aggtccttgg
     1381 caacctcgtt gccctggtcg gcgaggagac gcatcgcgtc gagggccatg aatgcgccct
     1441 ggtcgaggcc atcgacgacg gaatcgagct cgcgggcgag cttggcgatc tgctcgggcg
     1501 cgagccctgc cggcgcttgg agcatgagcc gcgaggagaa cgcccggcgg acgtgctcgg
     1561 gcagccggaa cccggtggtc gggaccggtc ggggctgccc gaccacgtct tgagacatgc
     1621 gctacttgcc cttcttggcc tcggctgcgg acgcggcggc agcgaggacg tcggtcgcgt
     1681 cgtcgtg
//
LOCUS       DATDDI010000666         2248 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_701128, whole genome shotgun sequence.
ACCESSION   DATDDI010000666 DATDDI010000000
VERSION     DATDDI010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701128"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VIU37_09585"
     CDS             <1..254
                     /locus_tag="VIU37_09585"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEY6014250.1"
                     /translation="NIAFTTTDVTAPADTPFVIEFQNQDAGVPHNVDIKDAGGTSVFK
                     GEIFAGVATKNYEVPALKAGTYSFICDVHPNMTGTLTVK"
     gene            299..1762
                     /locus_tag="VIU37_09590"
     CDS             299..1762
                     /locus_tag="VIU37_09590"
                     /inference="COORDINATES: protein motif:HMM:NF013507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014251.1"
                     /translation="MAQQALGAGMSVPRRRALFGLLDADGWGWASVKAFVWLVIIIFI
                     LGYLPDRAYYLTVGRTVDLGVLAWSPVNLCPPENETLPCPAPVGALVPWHPSPAELAL
                     PAARTDGAVLQVGTKLLYIGGSDGTTAQKTVYVARTVGTGNFDKWESGPDLPAPRADA
                     SVAYVAGSIYVLGGTDETGAPTTTVYMLTPDSVTGDLGQWKTAPDALTLPEARSGAAA
                     AITTDGLLLIGGRNASGPVATTWKSVLDTKGALGKWSEEQPLFAPQADATAAVVGDFV
                     WLFGGSDANGPVGAVQRGAFGKAAAAGLPANPDAGKVIRWDVSNNANLPVARTNASGW
                     AANGALYLAGGDDGKGPRTEVYWAIPTSTGDLTEWKHLPVMDLPAPGLEGAAPVITGP
                     NALLVGGATVGGILNSSARANTAPQSPFFQVGLVGATVPGLKIEGEIGQQLGYLNAAG
                     VGTVDFVILLLVGWAFAHKEQTRSMIGRVFRRGRRRS"
     gene            complement(1784..2155)
                     /locus_tag="VIU37_09595"
     CDS             complement(1784..2155)
                     /locus_tag="VIU37_09595"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY6014252.1"
                     /translation="MNAPGTIPTVDVVEASRRLREDPARPILLDVREMNEFLEVRAPG
                     AMLVPTSAFIARLGELPADRPLLVICHLGNRSAAVVGYLSRTGRTDAVNVAGGMDAWA
                     RAGLPVRRGPLETGEGELPPE"
BASE COUNT          338 a          828 c          788 g          294 t
ORIGIN      
        1 agaacatcgc cttcaccacg accgacgtga ccgccccggc cgacacgccc ttcgtgatcg
       61 agttccagaa ccaggacgcc ggggtgccgc acaacgtcga catcaaggac gccggtggga
      121 cctccgtgtt caagggcgag atcttcgcgg gcgtcgcgac caagaactac gaggtgccgg
      181 cgctcaaggc cgggacctac tcgttcatct gcgacgtgca ccccaacatg accggaacac
      241 tcaccgtcaa gtagcgtcgc ggcccgccgg atcggccggc cgctgaggat ggaggacgat
      301 ggcccagcag gcgctcggag cagggatgtc ggtgccgcga cggcgtgccc tgttcgggct
      361 gctcgacgcg gacggctggg gctgggcgtc ggtcaaggcc ttcgtctggc tggtcatcat
      421 catcttcatc ctcggctacc tgccggatcg cgcctactac ctcacggtcg gccggaccgt
      481 cgatctcggg gtcctggcct ggtcgcccgt caacctgtgc ccgcccgaga acgagaccct
      541 gccgtgcccg gcgccggtcg gggcgctcgt gccatggcat ccatcaccgg ccgagctcgc
      601 cctgcccgcg gcccgcaccg acggcgccgt cctccaggtc ggcaccaagc tgctgtacat
      661 cggcggctcc gacgggacca ccgcgcagaa gaccgtctac gtggcgcgga ccgtcggcac
      721 cggcaatttc gacaagtggg agagcggacc cgacctgccc gcgccgcggg ccgacgccag
      781 cgtcgcctac gtcgccggca gcatctacgt gctcggcggc accgacgaga ccggtgcgcc
      841 gacgaccacg gtctacatgc tcacgcccga cagtgtcacg ggcgacctgg ggcagtggaa
      901 gaccgctccc gacgccctga ccctgcccga ggcccggagc ggcgccgccg cagcgatcac
      961 caccgacggc ctgctgctga tcggcgggcg caacgccagc gggcccgtgg cgaccacctg
     1021 gaagtccgtg ctcgacacga agggggcgct cggcaagtgg agcgaggagc agccgctctt
     1081 cgcgccgcag gcggacgcca ccgcggccgt cgtcggcgac ttcgtctggc tgttcggcgg
     1141 gagcgatgcc aacggtccgg tcggcgcggt ccagcgtggc gcgttcggca aggcggcggc
     1201 cgccggcctg cccgccaacc ccgacgcggg caaggtcatc cgctgggacg tcagcaacaa
     1261 cgccaacctc ccggtcgccc ggaccaacgc ctccggctgg gcggcgaacg gcgcgctcta
     1321 tctcgccggc ggcgacgacg gcaaggggcc caggaccgag gtctactggg cgatcccgac
     1381 ctcgaccggc gacctgaccg aatggaagca cctccccgtg atggaccttc cggcccccgg
     1441 cctcgagggc gctgcaccgg tcatcaccgg cccgaacgcc ctgctggtcg gcggtgcgac
     1501 ggtcggcggc atcctgaact cgagtgcccg cgcgaacacg gcgccgcaga gccccttctt
     1561 ccaggtcggc ctggtcggtg cgacggtgcc ggggctcaag atcgagggcg agatcggcca
     1621 gcagctgggc tacctcaacg cggccggcgt cggcaccgtg gacttcgtga tcctgctgct
     1681 cgtcggctgg gcgttcgccc acaaggagca gacgcgctcg atgatcggcc gggtgttccg
     1741 ccggggccgc cggcgctcct aggccctccc gaggcaccga acgtcactcc ggcggcagct
     1801 cgccctcacc ggtctcgagc ggcccgcgac gaaccggcaa gccggcgcgc gcccaggcat
     1861 ccatgccgcc ggccacgttg accgcgtccg tccgccccgt ccgcgacagg tagccgacga
     1921 ccgcagccga gcgattgccg agatggcaga tcacgagcag cggccggtcg gccggcagct
     1981 cgccgagccg ggcgatgaac gccgacgtcg gaaccagcat cgcgccggga gcgcgcacct
     2041 cgaggaactc gttcatctcg cggacatcca gcaggatcgg gcgtgccgga tcctcgcgca
     2101 gacgccggga ggcctcgacg acgtcgacgg tcgggatcgt tccgggggcg ttcaatgggc
     2161 gctccttgcc aggctgggtg ggtcgagggt ggctccggcc gggtgcgcgg cgagatccgc
     2221 gaggcgcagg tcgatcgcgg tcacgatg
//
LOCUS       DATDDI010000667         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_160019, whole genome shotgun sequence.
ACCESSION   DATDDI010000667 DATDDI010000000
VERSION     DATDDI010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160019"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..930)
                     /locus_tag="VIU37_09600"
     CDS             complement(142..930)
                     /locus_tag="VIU37_09600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014253.1"
                     /translation="MLAITLSLAALGGLATNPGPAAAAAGMKVVVVVGPAGASTAKYI
                     ANGRRYASQARSYGARVIELYSPNATWTRVKAAAQGANILIYLGHGNGSPSPYGPFSA
                     LTKDGLGLNSSAGHGNNNVKYWGEYYIRTYINLAPNAVVILNHLCYASGNSEWGAANP
                     TKAVAMKRADNFGAGFLRANAKAVFAEGLDSASYLLASLFHSDQTLGQIFMSVPSASG
                     ARDFTFNSARTPGKRVWMDPVAPGRYYRSVVGSLSTTAAAVRRS"
     gene            complement(1293..>1567)
                     /locus_tag="VIU37_09605"
     CDS             complement(1293..>1567)
                     /locus_tag="VIU37_09605"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEY6014254.1"
                     /translation="LDPKALADAVEGRRAELADPAVAERATGYVVGGISPLGTRRTLP
                     VVVDASATARPTVLVSAGRRGIQLELAPADLVRLTGAIVASVARDH"
BASE COUNT          224 a          528 c          579 g          236 t
ORIGIN      
        1 tgctgggcgt cgcggcgcac gccgcgatcg tctagcgtcg ccggtcgcga tgccggacat
       61 ggaacgggcg cggctcggaa cgatccaagc cacgcccgtt cgtggaccca tctgcggcgg
      121 agccggggct ccaccgcggc gtcaggacct gcggactgcc gccgcggtgg tcgacaggct
      181 gccgacgacc gaccggtagt agcggccggg cgccaccgga tccatccaga ctcgcttgcc
      241 gggcgtccgg gcggagttga acgtgaagtc gcgggcaccg ctcgcgctcg gcacgctcat
      301 gaagatctgg cccagtgtct ggtccgagtg gaacaggctg gccaggaggt acgaggcgct
      361 gtcgaggccc tccgcgaaga ccgccttggc attcgcccga aggaagcccg ccccgaagtt
      421 gtctgcacgc ttcatcgcga cggccttcgt cgggttcgcc gcgccccact cggagttgcc
      481 ggacgcgtag cacaggtggt tgaggatgac gaccgcgttc ggggcgaggt tgatgtaggt
      541 ccggatgtag tactcgcccc agtacttgac attgttgttg ccgtgaccgg ccgacgagtt
      601 cagcccgagg ccatccttgg tcagcgccga gaagggcccg tacgggctgg gcgatccgtt
      661 gccgtgcccg aggtagatga ggatgttcgc gccttgtgcc gcggccttca cccgggtcca
      721 ggtggcgttc gggctataga gctcgatcac cctggcgccg tacgagcggg cctgcgaggc
      781 atagcgcctg ccgttcgcga tgtacttcgc ggtgctcgct cccgccggac cgacgaccac
      841 cacgaccttc atgccggcgg ccgcggccgc ggggccgggg ttggtcgcca gaccaccgag
      901 cgccgcgagc gacagggtga tggcgagcac gaccaggcga tacgaccgat ggacggaccg
      961 acctgttgac gcccgctggg cgccgcgctg gtgcagcggc aatcttcttg cctcctctcc
     1021 gccggaacac cgcgctgggg cgaggtgacg gtgggtggtg ccgccgacgg cagggacgca
     1081 caccggtgcg tcggcgatca ggcggatcga cctggggatc gatcacctgg gtcggagcgg
     1141 gacatcaatg acccggtccg acgagtgggc ggatcccgga acgaggcagg acctgccgtg
     1201 ggtagcggcg ttcttcggtt ggtgcctgtc tggtgacggg atgcctggga gcgaccggag
     1261 tatgccagcc gccccgggac cgtgtcgacc cctcaatggt cccgggcgac ggacgcgacg
     1321 atcgccccgg tcagcctgac gaggtcggcc ggcgccagct cgagctggat cccgcgtcgc
     1381 ccggcagaca ccaagacggt cggccgggcc gtggcggagg cgtcgacgac gaccggcaac
     1441 gtccggcgcg tgccgagcgg gctgatcccg ccgacgacgt agccggtcgc ccgctccgcc
     1501 actgcggggt cggccagctc cgcccgtcgc ccctcgacgg cgtcggccag cgctttggga
     1561 tcgagct
//
LOCUS       DATDDI010000668         2063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_243360, whole genome shotgun sequence.
ACCESSION   DATDDI010000668 DATDDI010000000
VERSION     DATDDI010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243360"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(37..1257)
                     /locus_tag="VIU37_09610"
     CDS             complement(37..1257)
                     /locus_tag="VIU37_09610"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY6014255.1"
                     /translation="MTPGLRREPGPDLEAVGQDEALASRIRAEIERDGPIPFARFMEL
                     ALYDPAGGYYRAGIARPGRGGDFLTAPETHPIFGEMLARAIEEAWERLGRPQPFVLRE
                     YGAGTGTLALAVLAGLDAGRSPLAGRLRYDPVEVEPRRLEAIVTRFGEAGRSATLVGA
                     ADHARPVAGVILANEVLDALPTHRLVGRGGRLQEVFVSADGGAFIELEGPPSTPALPA
                     RLAAEGIAFVDGQRGEVCLALEPWLAGAAAGLDRGLLLLIDYGYPAVDLYDPVRRRDG
                     TLRAYVRQRVHDDPYRHVGRQDLTAHVDITAVERAGEAAGLRHLGTTTQAEFLMGLGI
                     EDRLQAVQADPATTLEDYLALRSSLLRLLDPSAMGRFRVVGFGRDWPAGPPLAGFAYR
                     RVRERTKPHRTAPD"
     gene            complement(1254..>2063)
                     /locus_tag="VIU37_09615"
     CDS             complement(1254..>2063)
                     /locus_tag="VIU37_09615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014256.1"
                     /translation="ADERRVALANNRYSADVVAIAGAGVLADLPDLPGDNALPRWLEE
                     VAGYEVGDLRRRWRLAFDVDGPLELLLLGDQTAPDDADLGPLRERTAAVRAVAADRRA
                     ELLVAGRTSATTLGWLERGVAARVRAIVEERGLRAASRLAQSSSSGPGGADRAGGAPR
                     PPASLLGLLLEPDGPASLPGHLERLCDGAILDTRVLLAHRLGAGETDWPPAEDRFASD
                     LLLADRVEDPWLRELTRAAATSRIPILLGGHSLVGPGVRLLLGARGARRWT"
BASE COUNT          276 a          785 c          778 g          224 t
ORIGIN      
        1 gcgcgcgacc ggcgcccggg caatagggaa gttgccctag tccggggcgg tccggtgtgg
       61 tttggtgcgc tcgcgcaccc gccggtaggc gaacccggcg aggggcgggc cagccggcca
      121 atcccggccg aagcccacca cccggaagcg gcccatcgcg gagggatcca gcagccgcag
      181 cagcgaggac cgaagggcga ggtagtcctc cagggtcgtg gcgggatcgg cctggacggc
      241 ctggagtcgg tcctcgatcc cgaggcccat caggaactcg gcctgcgtgg tggttccgag
      301 gtgacggaga cccgccgcct cgccggcccg ctcgaccgcg gtgatgtcca cgtgggcggt
      361 caggtcctgg cgtccgacat gccggtacgg gtcgtcgtgc acccgctggc ggacgtacgc
      421 tcgaagggtc ccgtcgcggc ggcggaccgg gtcgtagagg tcgaccgccg ggtagccgta
      481 gtcgatcagc agcaggagcc cacgatcgag gccggccgcc gcgccggcga gccacggctc
      541 gagcgcgagg cagacctcac cgcgctggcc gtcgacgaac gcgatcccct cggcggcgag
      601 acgcgccggc agcgccggcg tggacggcgg gccttcgagc tcgatgaacg cgccgccgtc
      661 ggcgctcacg aagacctcct gcaggcggcc gcctcgcccc accaaccggt gcgtcggcag
      721 cgcgtcgagg acctcgttgg cgaggatcac gccagcgacc ggccgggcgt gatccgcggc
      781 cccaacgagg gtcgcggacc gacccgcctc gccgaaccgg gtcacgatcg cctcgagccg
      841 gcgcggctcg acctccaccg ggtcatatcg gagccgaccg gcgagcggcg accggccggc
      901 gtccaggccg gcgagcaccg ccaacgcgag cgtcccggtc ccggcgccgt attcgcggag
      961 cacgaagggt tggggccgcc cgagccgctc ccaggcctcc tcgatcgctc gggcaagcat
     1021 ctccccgaag atcggatggg tctccggtgc ggtcaggaag tcgccaccac ggccgggacg
     1081 cgcgatcccg gcccggtagt acccgccggc cgggtcgtac agggcgagct ccatgaaccg
     1141 ggcgaacggg atcggcccgt cgcgctcgat ctcggcgcgg atccgggacg cgagcgcctc
     1201 gtcctgcccg accgcctcga gatccgggcc cggttcgcgg cgcagccctg gggtcacgtc
     1261 caccggcgtg ccccgcgggc ccccagcagg agccggacgc cgggcccgac caggctgtgg
     1321 ccgccgagca ggatcgggat ccgcgacgtc gccgccgccc gcgtgagctc gcgcagccag
     1381 ggatcctcga cccggtccgc gagcaggagg tccgacgcga accggtcctc ggcgggcggc
     1441 cagtccgtct cgccggcccc cagccggtgc gccaggagca cccgggtgtc gaggatcgca
     1501 ccgtcgcaca accgttccag gtgcccgggg agtgacgccg gcccgtccgg ttcgagcagg
     1561 aggcccagca gcgacgccgg cggccgcggc gccccgccgg cccggtcggc accgccgggg
     1621 ccggatgacg aggactgcgc cagccggctc gcggcgcgaa gcccccgctc ctcgacgatc
     1681 gcgcggaccc tggcggccac gccgcgttcg agccatccga gggtggttgc cgaggtccgg
     1741 ccggcgacca gcagctcggc tcgccggtcg gccgccactg cgcgcacggc tgccgtccgc
     1801 tcccgcagcg ggccgaggtc cgcgtcgtcc ggcgcggtct gatcgccgag caggaggagc
     1861 tcgagcggcc cgtcgacgtc gaacgcgagc cgccaccggc gccgcaggtc gccgacctcg
     1921 tagccggcca cctcctcgag ccagcgcggc agggcattgt caccgggcag gtccgggagg
     1981 tcggcgagga ccccggcccc ggcgatcgca acgacgtcgg ccgagtagcg gttgttcgcg
     2041 agcgcgacac gacgctcgtc ggc
//
LOCUS       DATDDI010000669         1619 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_180901, whole genome shotgun sequence.
ACCESSION   DATDDI010000669 DATDDI010000000
VERSION     DATDDI010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180901"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..>1619)
                     /locus_tag="VIU37_09620"
     CDS             complement(229..>1619)
                     /locus_tag="VIU37_09620"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6014257.1"
                     /translation="NHPEGRTVARYRLALVPILALLVALLSYGFGSSAASGSTPTAAD
                     GTGTATVQDPAAQVQAPDAGPATGLVDTSDTDARIAFWQDRLKANPDSDAPYQYLGEL
                     FALKGRETGDIAQYALAREAFEHAIRLYPGNVAARSGLAVNLVTLHQWTEAIAQAKQI
                     LKTDLRALGAVAVIGDASLETGDLDTARAAFDTLREKADGPSVESRIARLDYLTGRTA
                     DAIRILDDAATASANLNGSVEEQAFYHYSAGEYRFNSGDVAGAGREYTAALDLLPNYY
                     LALAGRGRVAFAQGDLRGAIGYYKSAVAIIPKPELVAYLGDLYAITGDRAAAEAQYKT
                     VDFIVRLGEVQAQVFNREIALFQATHRRDTAHAVTIARAELETRKDIYGYDALAWALY
                     NDGQAAPALDPARQATSLGTQDPKLLYHLGMIELATGHAADGRAHLRAALALNPAFDP
                     LGAAAARAALGR"
BASE COUNT          213 a          541 c          599 g          266 t
ORIGIN      
        1 agacctgcgg acgggtcacg cccagcagct cggcgatctg gttctgggtt tcgcccagct
       61 cgtagtagag ccggctggcg cgaacgagct gctcgaaatc gctcatcggt cgccggctcg
      121 acgtgccgcg gctcccgccc catgcacgtt tgtacttgtc aggtgtgcag ccatgctccc
      181 ggcataatcc ggtccgggct ggcgggtgtc aagctcgccg ttccgccgtc agcgaccgag
      241 cgccgcgcga gctgccgcgg caccgagcgg gtcgaacgcc gggttgagcg ccagcgccgc
      301 ccgaaggtgc gcccggccgt cggcggcatg tcccgtcgca agctcgatca tcccgaggtg
      361 gtagagcagc ttcgggtcct gcgtgccgag cgatgtggcc tgccgggccg gatccagggc
      421 aggagccgcc tggccgtcgt tgtagagcgc ccaggccagg gcgtcgtagc cgtagatgtc
      481 cttgcgggtc tcgagctcgg cgcgggcgat cgtcaccgcg tgcgccgtgt cgcgccggtg
      541 ggttgcctgg aacagggcga tctcccggtt gaacacctgg gcctggacct cgccgagcct
      601 gacgatgaaa tcgaccgtct tgtactgggc ctccgccgcg gcccggtccc ccgtgatcgc
      661 gtagagatcg cccaggtagg cgacgagctc tggcttcggg atgatcgcaa cggccgactt
      721 gtagtacccg atcgcgcccc tgaggtcgcc ctgggcgaac gccacgcggc cgcgccccgc
      781 cagcgcgagg tagtagttgg gcaggagatc gagggccgcg gtgtactcgc ggccggcacc
      841 ggccacgtcc cccgaattga accggtactc ccccgccgag tagtggtaga acgcctgctc
      901 ctcgaccgac ccgttgagat tggccgacgc ggtggcggcg tcgtcgagga tccggatggc
      961 gtcggcggtc cggccggtca ggtagtcgag ccgggcgatc cggctctcga cactcggtcc
     1021 gtcggccttc tcgcgaagcg tgtcgaaggc ggctcgcgcg gtgtcgagat cgccggtctc
     1081 gaggctggca tcgccgatga ccgccaccgc gccgagcgcg cgcaggtcgg tcttgaggat
     1141 ctgcttggcc tgggcgatgg cctcggtcca ctggtggagc gtgacgaggt tgacggccag
     1201 ccccgatcgc gcggcgacgt tccctgggta gagccggatc gcatgctcga atgcctcgcg
     1261 ggcgagcgcg tactgggcga tgtcgccggt ctcgcgaccc ttgagggcga acagttcgcc
     1321 gaggtactga tagggcgcgt cgctgtcggg gttggccttc aggcgatcct gccagaacgc
     1381 gatccgcgca tcggtgtccg acgtgtcgac caggcccgtc gccggacccg cgtcgggcgc
     1441 ctggacctgg gcggccggat cctggaccgt ggccgtcccg gtcccgtcgg ctgcggttgg
     1501 ggtgctgccg gaggccgccg aggagccgaa cccgtagctc aggagcgcga cgagcagcgc
     1561 gaggatcggg acgagtgcga gtcgatacct ggccacggtc ctgccttccg ggtggttgg
//
LOCUS       DATDDI010000670         1876 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_347352, whole genome shotgun sequence.
ACCESSION   DATDDI010000670 DATDDI010000000
VERSION     DATDDI010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347352"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..383
                     /locus_tag="VIU37_09625"
     CDS             69..383
                     /locus_tag="VIU37_09625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014258.1"
                     /translation="MKAHLLGGPRDGKVIEFPGDQPPGQIRISTFAGALPGDLGDVLT
                     EIDAYSIGAGFEVPETGTGLAVYSIAVVRDGRTWRPDFDRCGRVPYRWTGKIVPDDRK
                     DS"
     gene            415..822
                     /locus_tag="VIU37_09630"
     CDS             415..822
                     /locus_tag="VIU37_09630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014259.1"
                     /translation="MKPGDLIMNEFGALAEVGERVNRDPRWKCAGWRITKRPTVGADG
                     YGHSQFLPDDHVASWRPAPMSWDVAPRTGGTLVERWTTTPDGRWWRELRPRRLTGCCD
                     SCGGTGTSDDASTSGKCWDCRGTGHPHDGVCPA"
     gene            819..>1876
                     /locus_tag="VIU37_09635"
     CDS             819..>1876
                     /locus_tag="VIU37_09635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014260.1"
                     /translation="MTADTKPDKAVRLRCPQCRGVTVARGRTTADAVLDDHEARYVRR
                     EGRWVALDPERCRFSGATLADARDGVSPYARSLISRHVDMEATVKALDAAPSPKAELS
                     AQFAHPVGLADVEEMDEDREAELAAARTAAGTEARPAYSSADDPLAIGDAWVGRECTW
                     TGWECECPSRGKSGPRNHFRTRLPGPPPLMEAAGPAPRHPDSGFRIMISRDVEIGYGA
                     EYITVMEECSTWSPTRRSDVLNPHRGLSGMGEPGTSGKPGTEQGSEPETPVRVLDVQH
                     IDSPRHLTGGPLTLYRHAARVVRSAWTTDPAATEADHVTVGLVGLVQRDGAPVRWWAY
                     WSGPIVKGKPSMRFDGAF"
BASE COUNT          269 a          675 c          693 g          239 t
ORIGIN      
        1 ctgatctcga tcgagctggc ctcgcgccgg atcgaccgcc tggtggagcg gcacctggca
       61 ggccggaggt gaaggcccac ctgctcgggg ggccgaggga cgggaaagtg atcgagttcc
      121 cgggcgacca gccccccgga cagatccgga tctctacctt cgccggggca ctgccgggcg
      181 acctgggcga cgtcctgacc gagatcgacg cctactcgat cggcgccggc ttcgaggtcc
      241 ccgagaccgg gaccggtctg gccgtctact cgatcgccgt ggtccgcgac ggccgcacct
      301 ggcggccgga cttcgaccgg tgcggccggg tgccctaccg ctggacgggc aagatcgtgc
      361 cggacgaccg caaggactct tgagtaatca acccccctga ggtagaatgg ggccatgaag
      421 ccaggcgacc tgatcatgaa cgagttcggc gcgctcgccg aggtgggcga gcgcgtgaac
      481 cgcgacccgc ggtggaagtg cgccggttgg cggatcacca agcggccgac cgtcggcgcc
      541 gacggctacg gccactcgca gttcctgccg gacgaccacg tcgcgagctg gcggccagcg
      601 ccgatgtcct gggacgtcgc gccgcgcacc ggcgggacgc tcgtggagcg ctggacgacc
      661 acgccggacg gccggtggtg gcgcgagctg aggccgcgcc gcctgaccgg gtgctgcgac
      721 tcgtgcggcg gtaccggcac gagcgacgac gccagtacca gcgggaagtg ctgggactgt
      781 cggggcaccg gccacccgca cgacggggtg tgcccggcat gacggcggac accaagccgg
      841 acaaggccgt tcgcctgcgc tgcccacagt gccggggcgt gaccgtagct cgtggccgga
      901 cgacggcgga cgccgtactg gacgaccacg aggcccggta cgtccggcgc gaggggcgct
      961 gggtcgcgct cgatccggag cgctgccggt tctccggcgc caccctggcc gacgccaggg
     1021 acggcgtgtc gccctacgcc cgctcgctga tctcccggca cgtcgacatg gaggccacgg
     1081 tcaaggccct ggacgccgcg ccgtcgccca aggcggagct gtccgcccag ttcgcccatc
     1141 cggtcggcct ggccgacgtg gaggagatgg acgaggaccg cgaggcggag ctggccgccg
     1201 cccgcaccgc cgcgggcacc gaggccaggc cggcctactc gtccgccgat gacccgctgg
     1261 cgatcgggga cgcctgggtc gggcgcgagt gcacctggac gggctgggag tgcgagtgcc
     1321 cgtcccgcgg caagtccggc ccgcgcaacc acttccgcac gcgcctgccc ggtccacccc
     1381 cgctcatgga ggcggccggg ccggcgccgc gtcatcccga ctccggcttc cggatcatga
     1441 tctcgcggga cgtcgagatc ggttacgggg cagagtacat cacggtcatg gaggagtgct
     1501 ccacctggag ccctacgcgc cgatctgacg tactcaaccc ccatcgtggg ctgtccggta
     1561 tgggggagcc gggaacgtcc gggaaacccg gcacggagca gggctccgag cccgaaacgc
     1621 cggtgcgagt tctcgacgtc cagcacatcg actccccgcg gcacctgacc ggcggcccgc
     1681 tcaccctgta ccggcacgcg gccagggtcg tgcgctcggc gtggaccacc gaccccgccg
     1741 cgaccgaggc cgaccacgtg acggtcggcc tggtcggcct ggtccagcgc gacggcgcgc
     1801 cggtgcggtg gtgggcgtac tggtccgggc cgatcgtcaa gggcaagccg tccatgcgct
     1861 tcgacggcgc cttctg
//
LOCUS       DATDDI010000671         2211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_139373, whole genome shotgun sequence.
ACCESSION   DATDDI010000671 DATDDI010000000
VERSION     DATDDI010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139373"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VIU37_09640"
     CDS             complement(<1..233)
                     /locus_tag="VIU37_09640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014261.1"
                     /translation="MTFALNVATLAWAGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG
                     VGVGVGEPVGVGVGVGVVTTQAPAPCDWPELPRS"
     gene            259..501
                     /locus_tag="VIU37_09645"
     CDS             259..501
                     /locus_tag="VIU37_09645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014262.1"
                     /translation="MVQAKVLHATRGTTFSATAVAHFTSGDVTLKLRRAGKSFVAVGK
                     IRVPGDQATNVKVEVTIVYGGVTEPVIEKPSKITLP"
     gene            584..>2211
                     /locus_tag="VIU37_09650"
     CDS             584..>2211
                     /locus_tag="VIU37_09650"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY6014263.1"
                     /translation="MTNQPHANRGTPPTDVLPPNPEWFSDLARTGHDVFFRYRLLPTP
                     GYDYLSPSVTELTGYPVDAFMADPGLYRTLVHPDDRTLLEQAEGGAADAGIIRWLRAD
                     GAVVWIQQRIITIKGPDGRAIAVEGIARDVSSQARALEAVQGSEHAFRNLLDRIDLAA
                     AIVGLDGAITYVNEFFLQATGWTCEDLMGRDFFETFAPEDQREQRRAFFGASLRAGAG
                     AAPRMTDFVTRDGTVRQFSLATTVLHDANGQATGIAGIGTDVTAHRAVERERDRLGAA
                     VDQAVESVLVIDADGSIIYANPAAAREAGLSPPEARGLRPYEHLPERERRAFRRALRR
                     VAKAGEAWSGEWQRTDHVGLSHREEVSISPVFDALGAVSSFVVVAHDVTNLREAEAEI
                     RSALRERAEIDAALRRIEPRATLEGTAQAICDEIVRLTGIDFAAIDAFVGPDALLVIG
                     AAGSPVRPGEFVPPERAAILRERAESGPWAEHWQHRGDDFGQRLSAAGIRAIAVCPIE
                     SEGGAAGLLFVGTRSPAFAQHLVDRLPAAVEFATT"
BASE COUNT          337 a          835 c          746 g          293 t
ORIGIN      
        1 gatcgcggca attccggcca gtcgcacggt gccggtgcct gcgtggtcac gacgcccacg
       61 ccgaccccga cgccgaccgg ctcgccgacg ccgacgccca cgccgacgcc cacgccgacg
      121 ccgacgccga cgccgacgcc cacgccgacg ccgacgccca cgcccacgcc gacgccgact
      181 cccacgccga cgcctgccca cgccaaggtg gcgacgttca gcgcgaaggt cacgccaagc
      241 catccgtgcg gggcgatcgt ggtccaggcc aaggtgcttc acgccacccg cgggacgacc
      301 ttcagcgcga ccgccgtcgc tcacttcacg agcggtgacg tgaccctgaa gcttcgccgg
      361 gcgggcaagt ccttcgtcgc ggtcgggaag atccgcgtgc cgggcgacca ggcgaccaac
      421 gtcaaggtcg aggtgaccat cgtctacggt ggtgtcaccg aaccggtcat cgagaagccc
      481 tcgaagatca cgctgccgta aggcgtactc gcaccccgtc catcgaatcc catgaggcgc
      541 cgcccgagac gggcggcgcc tcatcgtcat taccggtcct ccagtgacaa accagcccca
      601 cgcgaaccgc ggcacgccgc cgacggacgt ccttccgccg aaccccgaat ggttcagcga
      661 cctggcgagg accggacacg acgtcttctt ccgctaccgg ctcctgccga ccccgggcta
      721 tgactacctg agcccgtccg tgaccgagct gaccggctac ccggtcgacg ccttcatggc
      781 cgacccaggc ctgtaccgga cgctcgttca cccggacgac cggactctcc tggaacaggc
      841 cgagggcggc gccgcggacg cgggcatcat ccgctggctt cgcgcggacg gcgccgtcgt
      901 gtggatccag cagcgaatca tcacgatcaa ggggccggat ggccgtgcga tcgccgtcga
      961 gggcatcgcg cgcgacgtat cgtcccaggc ccgggcgctc gaggcggtgc agggctcgga
     1021 gcacgcgttc cgcaatctgc tcgaccggat cgacctcgcg gccgccatcg tcggcctcga
     1081 cggagcgatc acctacgtca atgaattctt cctgcaggcg acgggctgga cctgcgagga
     1141 cctcatgggt cgcgacttct tcgagacgtt cgcccccgag gaccagcgcg agcagcgccg
     1201 cgcattcttc ggcgcctcgc tgcgggccgg ggccggcgcc gcgccacgca tgaccgactt
     1261 cgtcacgcga gacggtacgg tccgacagtt cagcctggcg acgacggttc tccacgacgc
     1321 gaacgggcag gccacgggga tcgccgggat cgggaccgac gtgaccgcgc atcgtgccgt
     1381 cgagcgcgaa cgcgaccggc tcggcgccgc cgtcgaccag gcggtcgaat cggtgctcgt
     1441 gatcgacgcc gacgggtcga tcatctacgc gaacccggcc gccgcgcgag aagccggact
     1501 ctcacccccg gaggcccgcg gactccgccc gtacgagcac ctcccggagc gcgagcggcg
     1561 cgcgttccgc cgggccctcc ggcgcgtcgc caaagcggga gaggcctggt cgggcgaatg
     1621 gcaacgaacc gatcacgtag gactgtccca ccgcgaggag gtctcgatct cccccgtctt
     1681 cgacgcgctc ggcgcggtgt cgagcttcgt cgtcgtcgcc cacgacgtca ccaacctgcg
     1741 cgaggccgag gccgagatcc gatcggccct ccgcgagcgg gccgagatcg acgccgcgct
     1801 ccgcaggatc gagccgcggg ccaccctcga ggggacggca caggcgatct gcgacgagat
     1861 cgtcaggctg accgggatcg atttcgcggc gatcgatgcg ttcgtcgggc ccgacgccct
     1921 gctcgtgatc ggggccgccg gctcgccggt ccggccgggc gagtttgtcc caccggaacg
     1981 ggcggcgatc ctgcgcgagc gtgccgaatc gggaccctgg gccgagcact ggcagcatcg
     2041 cggcgacgac ttcgggcagc gcctgtcggc ggccgggatc cgggccatcg ccgtctgccc
     2101 catcgaatcc gagggtggcg cggccggcct cctgttcgtc ggcacccggt cgccggcgtt
     2161 tgcccagcat ctggtggacc ggctgccggc ggccgtcgag ttcgcgacga c
//
LOCUS       DATDDI010000672         2271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_160035, whole genome shotgun sequence.
ACCESSION   DATDDI010000672 DATDDI010000000
VERSION     DATDDI010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160035"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1813
                     /locus_tag="VIU37_09655"
     CDS             <1..1813
                     /locus_tag="VIU37_09655"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY6014264.1"
                     /translation="SYGAGGYQKTPIEEALPVDMGVRDRQKEPDVALVVVIDQSGSMA
                     ACHCNSFNMGGNRTGIAGVRKVDIGKEAILRAAAALTARDELGVVGFNEAAHWVVHTQ
                     PLGSIGDLQGQIAGIEPDGQTNIFAGLDQAVQSLETATATRRHIILLTDGWSTSGQYD
                     QILAKMKADGITLSTVGAGGGANPFLEQLAQQGGGRYYAAANPASIPDIFLKETQQVS
                     GQQIVEESFFPIQTSSSPILRGLDQGLPRLLGYNGTTIKPAAQDVLVTARDDPLLAQW
                     QYGLGRSVAWTSDSTGRWARNWVGWAGFSRFFSQLVAWTFPGEESGGIEASFESSGDT
                     TGLHVQSVAPDGSPRDFYSTSAVVVGPDLEPRNVNLVQTAPGVYDAPLGEIDPGAYAV
                     RITQSKPGTAPLGRTLGLVARTPAEYRVLGANEPYLAALRDATGGHAVLTALDPWRHD
                     LRATSQFTELWPWLLVLAMLLWPIDVALRRISLGRRELVAAREWVRGVGRRRRATAPR
                     TAAGESLLATRGRASGEAARAALVARFPERPTSAAPAQATPDPGKVPPATPTAAAEST
                     AATEPPAAPGQPPAPATQDGAETLARLREAKRRSRER"
     gene            1857..>2271
                     /locus_tag="VIU37_09660"
     CDS             1857..>2271
                     /locus_tag="VIU37_09660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014265.1"
                     /translation="MVSLPRAVSGILLTAFLLAGCGTVETTPAAPSPADFGGIISEFA
                     KRGVVATHVVSGDAGCTDTVLIPTAISFDATGVDQAAPVKVYLYIFNNRAAFERLRPT
                     IDACARSFVTDPETYQSIDESPFVLAGQGPWGTGFE"
BASE COUNT          334 a          834 c          794 g          309 t
ORIGIN      
        1 gagctacggc gccgggggct accagaagac cccgatcgag gaggcgctac cggtcgacat
       61 gggcgtccgt gaccgtcaga aggagccgga tgtggccctg gtcgtggtca tcgaccagtc
      121 gggctcgatg gcggcctgcc actgcaactc gttcaacatg ggcggcaacc gcaccggcat
      181 cgccggcgtg cgcaaggtcg atatcggcaa ggaggcgatc ctgcgcgccg ccgcggccct
      241 gaccgcgcgc gacgagctcg gcgtcgtcgg tttcaatgag gcggcgcact gggtcgtcca
      301 cacccagccg ctcgggagca tcggcgacct gcagggccag atcgcgggca tcgaaccgga
      361 cggccagacg aacatcttcg ccggcctcga ccaggccgtg cagtcgctcg agacggcaac
      421 ggcgacgcgc cggcacatca tcctgctgac cgacggctgg tcgacgtcag gccagtacga
      481 ccagatcctg gccaagatga aggccgacgg gatcacgctc tccaccgtgg gcgccggtgg
      541 tggtgcgaac ccgttcctcg agcagctcgc ccaacagggc ggcgggcgct actacgccgc
      601 ggccaacccc gcgagcatcc cggacatctt cctcaaggag acgcagcagg tgtccggcca
      661 gcagatcgtg gaggaatcgt tcttcccgat ccagacgtcc tcgtcgccga tcctgcgcgg
      721 gctcgaccag ggactgccgc ggctgctcgg ctacaacggg accacgatca agcctgcggc
      781 gcaggacgtg ctcgtcaccg cgcgtgacga tccgctgctc gcgcaatggc agtacgggct
      841 cgggcgatcg gtggcatgga cctcggactc cacgggccgc tgggccagga actgggtcgg
      901 ctgggcgggc ttcagccggt tcttcagcca gctcgtggcc tggacgttcc ccggcgagga
      961 atccggcggc atcgaggcgt ccttcgaatc gagcggcgac acgaccgggc tccacgtcca
     1021 gagcgtggcg cccgacggct ccccacgtga cttctactcg acgagcgccg tcgtggtcgg
     1081 gccggacctc gagccacgca acgtgaacct ggtccagacc gctcccgggg tctacgacgc
     1141 gccgctcggc gagatcgacc cgggcgcgta cgcggtccgc atcacgcagt cgaagccggg
     1201 cacggcgccg ctcggccgga cccttgggct ggtggcccgg acgccggccg agtaccgggt
     1261 cctcggtgcc aacgagccgt acctcgcggc gctccgcgac gccaccggcg gccatgccgt
     1321 cctgaccgcg ctggatccat ggcggcacga cctgcgagcg acgagccagt tcaccgagct
     1381 gtggccgtgg ttgctggtcc tcgccatgct gctctggccg atcgacgtcg cgctgcgccg
     1441 gatctcgctg ggacgccgcg agctcgtcgc ggctcgcgag tgggtgcgcg gcgtcggtcg
     1501 ccggcgtcgc gcgacggcgc ctcggaccgc cgcgggcgag agcctcctgg ccacccgagg
     1561 tcgtgccagc ggcgaggcag cccgggcggc gctcgtggcg cggttccccg aacggccgac
     1621 atccgccgcg ccggcccagg caacgcccga ccctgggaag gttccgccgg cgacgccgac
     1681 cgctgcggcg gaatcaacgg cggccaccga acccccggcg gcaccgggcc agcctcccgc
     1741 gccggcgacc caggacggcg cggagaccct cgcccgcctg cgcgaggcca aacgccggag
     1801 ccgcgagcgc tgacccgacg gtccggagac ctgcgcggtg gtagccttcc gcccgcatgg
     1861 tttccctgcc tcgggccgtc agcggcatcc tcctgaccgc gttcttgctc gccggatgcg
     1921 gcaccgtcga gaccacgccg gcggccccca gcccggccga cttcggcggg atcatctccg
     1981 agttcgccaa gcggggcgtg gtggcgacgc acgtggtctc gggcgatgcc ggctgcaccg
     2041 acaccgtcct gatcccgacg gcgatcagct tcgatgcgac tggcgtcgac caggccgcgc
     2101 ccgtcaaggt ctacctctac atcttcaaca accgagcggc attcgagcgg ctgcggccga
     2161 cgatcgacgc ctgtgctcgc agcttcgtga ccgacccgga gacctatcag tcgatcgacg
     2221 agtcgccgtt cgtgctggcc ggccaggggc catggggcac cgggttcgaa c
//
LOCUS       DATDDI010000673         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_659408, whole genome shotgun sequence.
ACCESSION   DATDDI010000673 DATDDI010000000
VERSION     DATDDI010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659408"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VIU37_09665"
     CDS             complement(<1..767)
                     /locus_tag="VIU37_09665"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEY6014266.1"
                     /translation="MRHLLLWAARNRWLKDRLPRMRFVRRAVRRFMPGETLADALGAA
                     IPLQAAGIRTLYTHLGENLANLAEADQVADHYIAAIDQIVAAGIDGEVSVKPTQLGLD
                     HDADACLAHLVRIAEHAAAAGSYLWVDMEGSAYCEATVALYERLRAVQPKTGICLQAY
                     LRRTAADIERLRPLDPAIRLVKGAYEEPSSIAYTNRRSIDANFLGLAVRFLLDGRGRP
                     IRLGLGTHDVNLIEQVADQVAAAGIARDGFEVEMLYG"
     gene            841..1284
                     /locus_tag="VIU37_09670"
     CDS             841..1284
                     /locus_tag="VIU37_09670"
                     /inference="COORDINATES: protein motif:HMM:NF021486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HEY6014267.1"
                     /translation="MTRFYDIDDANALLPELGSIVRVLGEQRAELVRLRDEVLAAGKA
                     GGEGATTALGGPAGGADRPPISGELRLTRLRMQGLIDQMAAGVARIDALGLTLRDIER
                     GLVDFPALVSGRQVWLCWRLGETAIGWWHGLDTGFDGRQPLAELA"
     gene            1281..>1705
                     /locus_tag="VIU37_09675"
     CDS             1281..>1705
                     /locus_tag="VIU37_09675"
                     /inference="COORDINATES: protein motif:HMM:NF015690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HEY6014268.1"
                     /translation="MTARSVVVGSDGRAKAYRPIPVHDRAAAVAAGFAAYEQGDFFAA
                     HEHLEPAWMGTDDLVERAWLQGLIKLAAAYVHGVRGNPAGIARNLEGARSRLAEAAAR
                     TPVATAPDGSRLDLASLVAAIDLRLADLGAHPGGATLEPP"
BASE COUNT          222 a          626 c          617 g          240 t
ORIGIN      
        1 atgccgtaca gcatctccac ctcgaacccg tcacgagcga tgccggccgc cgcgacctga
       61 tcggcaacct gctcgatgag gttcacgtcg tgcgtcccca ggcccagccg gatcggccgg
      121 ccgcgcccgt cgagcaggaa ccggaccgcg agccccagga agttggcgtc gatgctccgc
      181 cggttcgtgt aggcgatcga cgacggttcc tcgtaggcgc ccttgaccag tcggatggcc
      241 gggtcgagcg gccgcagtcg ttcgatgtcg gccgccgtcc ggcgcaggta cgcctggagg
      301 cagatcccgg tcttcggctg caccgcccgc agccgctcgt acagcgcgac cgtggcttcg
      361 cagtacgcgc tcccctccat gtcgacccag aggtaggagc cggccgcggc cgcgtgctcg
      421 gcgatccgca ccaggtgggc gaggcaggcg tcggcgtcgt ggtcgaggcc cagctgcgtc
      481 ggcttgaccg agacctcgcc gtcgatcccc gcggccacga tctggtcgat ggccgcgatg
      541 taatgatcgg cgacctggtc tgcttcggcc aggttcgcga ggttctcgcc gagatgcgtg
      601 tagagcgtcc ggatgccggc cgcctggagc gggatcgccg ccccgagggc gtcggcgagg
      661 gtctcgcccg gcatgaaccg cctgacggcc cggcgcacga agcgcatgcg gggaagccgg
      721 tccttgagcc accgattcct ggcagcccac agcaagagat gacgcacgga tgtctcctcg
      781 tgccccgcct gatgggggct caccagatgg tacgcgacca tgcggctaga atcgcggccc
      841 atgacccgct tctacgacat cgacgacgcc aatgcgctgc tgcccgagct cgggtcgatc
      901 gtccgcgtgc tcggcgagca gcgcgccgag ctggtccggc tccgcgacga ggtcctggcc
      961 gcggggaagg ccggcggcga gggcgccacg accgcgctcg gcggcccggc cggcggcgcc
     1021 gaccggcccc cgatctcggg cgagctgcgg ctgacccggt tgcggatgca gggcctgatc
     1081 gaccagatgg cggcaggcgt cgcccggatc gacgccctcg ggctcaccct gcgcgacatc
     1141 gagcgcgggc tggtcgattt cccggcgctc gtgtccggac gccaggtctg gctgtgctgg
     1201 cggctcggcg agacggcgat cggctggtgg cacggcctcg acaccggctt cgacggccgg
     1261 cagccgctcg cggagctcgc gtgacggcgc gctcggtcgt cgtcggctcg gacggccggg
     1321 cgaaggccta ccgcccgatc ccggtgcacg atcgggcggc cgcggtggcc gccgggttcg
     1381 cggcctacga acagggcgac ttcttcgccg cccacgagca tctggaaccc gcctggatgg
     1441 gcaccgacga cctggtcgag cgcgcctggc tgcagggcct gatcaagctc gccgccgcct
     1501 acgtccacgg ggtccgcggc aacccggccg ggatcgcccg gaacctcgaa ggcgctcggt
     1561 cgcgactggc ggaggccgcg gcccggacgc cggtcgccac ggctcccgac ggttcccggc
     1621 tggacctggc atccctcgtc gccgcgatcg acctgcgcct cgcggatctc ggggcacatc
     1681 ccggtggcgc cacgctcgag ccgcc
//
LOCUS       DATDDI010000674         6981 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_118273, whole genome shotgun sequence.
ACCESSION   DATDDI010000674 DATDDI010000000
VERSION     DATDDI010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 6981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6981
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118273"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..448
                     /gene="nuoK"
                     /locus_tag="VIU37_09680"
     CDS             137..448
                     /gene="nuoK"
                     /locus_tag="VIU37_09680"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEY6014269.1"
                     /translation="MSDSLDAYLVLSGLLFAIGSFGFLARRNAISMLMSIELMLNAVN
                     LAIVSFGAFIPALGGQGSVIALIVIAAAAAEATVGLAIVIAIFRNKKTPLVDEYDSMR
                     Q"
     gene            445..2403
                     /gene="nuoL"
                     /locus_tag="VIU37_09685"
     CDS             445..2403
                     /gene="nuoL"
                     /locus_tag="VIU37_09685"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005141.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEY6014270.1"
                     /translation="MSWDQLVPLIAALPLGGFVATALIGRRLGKQAHWIPVLAVFVAW
                     LISMGVAYSALTGQAPFGEGGFDVRMFEWIPAGNFTVNAGFFVDNLTACLLIVVTTIG
                     LLVHVYSIGYMGHDPGYWRFFAYLNLFMFSMLLLVLADSFLVVFVAWELVGLSSYLLI
                     GFWYRKRTAALAAKKAFIVNRVGDVGFALGIMLIFVSLGTLDIREVVARVGELDPTRI
                     TIIALLIFAGAMGKSAQFPLHVWLPDAMEGPTPVSALIHAATMVNAGVYLVARTNPIF
                     AQSSSALVVVAAIGIFTAILAASIAMTQTDIKRVLAYSTLSQLGYMFAALGVGAWTAA
                     IFHLMTHGFFKGLLFLGSGSVIHAVHEEQDMRQMGGLSRKIPITYVTMLVGSLAIAGI
                     PPLAGFFSKDEILGESFKNGFLWVWAIGFLVAGLTAFYMFRLMGLTFWGTFRGPKAVW
                     DKIHESPPVMTIPLILLAIPSLLLGMALGLPFGANTIAAWLKPVFEGGQAVLHGGAEE
                     AAFSLFGIDGTLILASVTVAVVGIVIAWRLFGADLAGLRVTARPERVRELTARVPFLY
                     RASLNKWWFDDLYHLLFIVIGGRVAAVIWWFDREVVDGTVNAIGGDTIEVGRGLRRIQ
                     TGHVQNYALGIAVGLIVMAGSYLLLAGR"
     gene            2406..4076
                     /locus_tag="VIU37_09690"
     CDS             2406..4076
                     /locus_tag="VIU37_09690"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEY6014271.1"
                     /translation="MDVSSIPLLSIIIFLPLVGAFVVGFGPASAARPVALIFALLAWV
                     ASLLLLVGYLPGRPGFQFGEVADWIPFFGIQYKLGADGLSVALVVLTTTLSWISILAS
                     FKPIQTRIKEYMISFLVLEVGMIGVFLALDTFLFYIFWEIVLVPMYLIIGIWGGANRI
                     YATIKFVLYTLVGSLLMLVAILATAYAYQTGHDGSWVGAFDFEALRSYAATGGFADGL
                     QLAAFLAFFLAFAIKVPMFPFHTWLPDAHTEAPTAGSVILAAIMLKLGAYGFIRFAVP
                     LFPAAAQTFAPAIIVLSLIAIIYGAIVALVQPDRKRLVAYSSVSHMGFVTLGIFVFTE
                     QGLQGAVLQMVNHGLITGALFLLVGVFYERTHDRTIAKMGGLAAGMPVWAAVFGFFVF
                     ASGGLPGLSGFVGEFLVLVGTFTANPYAAAVASFVMILAAAYLLFMFQRIVFGELSDF
                     LAGLGTHLTDMEPVEVLTLVPLGVLVVVFGIQPGLVLNLFGSTVSETLDAVRAAPVIG
                     IPTEVQVAMIGLVIVGILGRIGWALMRPRPDAGPGTVVTAASEGGAAH"
     gene            4073..5551
                     /locus_tag="VIU37_09695"
     CDS             4073..5551
                     /locus_tag="VIU37_09695"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEY6014272.1"
                     /translation="MTWQDFVVIAPLVAGILTASGIMVIDLIRPGRPAVAVASALIGL
                     AITAGLTAVAGASPGSAFNGAYRVDALTTFLDLLFVAIIAMTVVFGPDYLVPRGLPVA
                     EYATILVFAMTGAMLIAASTDLLVLFLGLELMVLPGYMLAAFHKTDAYSTEGAIKYFL
                     LGSFSSAIFLFGLAFVWGLTGTTRVDEVAAALAAVAAGTAPLSPGLAMGLAFMTTGVA
                     FKIAAVPFHYWTPDAYQGSPTPVTGYLSVLPKVGAFALILRLFVETLGPLSEWWLPVM
                     IVLATLTMTLGNLVALTQDNVKRMLAYSSIAHTGYMLVGLAAWAGDGQGRIDGLEALL
                     FYGAAYAFMNLGAFAVVAALQKRAGVTSGLATFAGLGRREPLLGILMTLFLLSLTGIP
                     PTAGFFAKANVIIAAVEAGGPLTTLAVITVLNAAVAAFYYLRVVVYMFMREPATEPQV
                     MRHGALLWGGLAAATALTILLGLFPTALLEAAGRAAQALITS"
     gene            complement(5578..6285)
                     /locus_tag="VIU37_09700"
     CDS             complement(5578..6285)
                     /locus_tag="VIU37_09700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014273.1"
                     /translation="MANLAERIRTRLVPALLTAFGVTLLSAGLLSLTGGVTADSLSTP
                     APSAVTAPPTSTPLITLPPLESGVLPTASPTAPADRVATRVRIAALKIDLPVVAPPPG
                     DNAYPYCNVAMYLTSLGQPGQGRATYLYAHARTGMFLPLLDASLVQNGKSMLGMVVEV
                     WTSDDQRFLYDITEVRRHQTDLADAANATSEQLWLQTSEGPKGTVPKLQVVAEPLSQE
                     AADPADAHPVAKPLVCG"
     gene            6356..>6981
                     /locus_tag="VIU37_09705"
     CDS             6356..>6981
                     /locus_tag="VIU37_09705"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY6014274.1"
                     /translation="MGPRFAIAAGLLAGVGVAAILLLGLLVLAPEPASPPTPAPSIAQ
                     ASSSGTPSSVLSASPASTGPATASATAPSGAGFHVGEPAPALVVPQVGGGTIDLASLK
                     GKPVWVNFMATWCPPCQDEFPLMSSFAARYADSGLVVVAIDVREDEGTVAGFAQRLNA
                     TFPLGLDADGTAAGRWGAIALPVHFWIDAQGIVRDGAAGGIGADTMVHG"
BASE COUNT          849 a         2460 c         2394 g         1278 t
ORIGIN      
        1 tccggctcgc caccgaggcc ctgtcgcagc tcctcttcca cgatttcgtg ctgccgttcg
       61 agatcgtgag cgtgctgctc ctggcggccg tcatcggcgg cgtcttcctc gccaagcgcg
      121 agccgggcgg gccatcgtga gcgacagcct cgacgcctac ctcgtcctgt ccgggctgct
      181 gttcgccatc ggctcgttcg ggttcctggc ccggcgcaac gcgatcagca tgctgatgtc
      241 gatcgagctg atgctcaacg cggtcaacct ggcgatcgtg tcgttcgggg cgttcatccc
      301 ggcgctcggc gggcagggct cggtgatcgc gctgatcgtc atcgccgcgg ccgcggccga
      361 ggccacggtc ggcctggcga tcgtcatcgc gatcttccgc aacaagaaga ctccgttggt
      421 cgacgaatac gactccatgc gccaatgagc tgggatcagc tggtcccgct catcgccgcg
      481 ctgccgttgg gcggcttcgt ggcgaccgca ctcatcgggc gacggctggg caagcaggcg
      541 cactggatcc cggtgttggc ggtcttcgtc gcctggctga tctcgatggg cgtcgcgtac
      601 tccgccctga ccgggcaggc gcccttcggc gagggcgggt tcgacgtccg gatgttcgag
      661 tggatcccgg ccggcaactt caccgtgaac gccggcttct tcgtcgacaa cctgaccgcc
      721 tgcctgctga tcgtggtcac caccatcggg ttgctggtcc acgtctactc gatcggctac
      781 atgggccacg accccgggta ctggcgcttc ttcgcctacc tcaacctgtt catgttctcg
      841 atgctgctgc tcgtcctcgc ggacagcttc ctggtcgtct tcgtcgcctg ggagctggtc
      901 gggctgtcga gctacctgct gatcgggttc tggtaccgga agcgcacggc ggcgctggcc
      961 gccaagaagg cgttcatcgt caaccgcgtc ggtgacgtcg ggttcgcgct cgggatcatg
     1021 ctgatcttcg tcagcctggg cacgctcgac atccgcgagg tcgtggcccg ggtcggcgag
     1081 ctcgacccca cccggatcac gatcatcgcc ctcctgatct tcgccggcgc gatgggcaag
     1141 agcgcccagt tcccgctcca cgtctggctg ccggacgcga tggaaggccc gaccccggtg
     1201 tcggctctga tccatgccgc gacgatggtc aacgccggcg tctacctggt cgcccggacc
     1261 aacccgatct tcgcgcagtc ctcgtcggcg ctcgtggtgg tcgccgcgat cggcatcttc
     1321 accgcgatcc tggccgcgtc gatcgcgatg acccagacgg acatcaagcg cgtcctggcg
     1381 tattccacgc tgagccagct cggctacatg ttcgccgcgc tcggggtggg cgcctggacg
     1441 gcggcgatct tccacctgat gacgcacggc ttcttcaagg gcctgctgtt cctcgggtcg
     1501 ggctcggtca tccatgccgt ccacgaggaa caggacatgc gccagatggg cgggctgtcg
     1561 cgcaagatcc cgatcaccta cgtgaccatg ctggtcggct cgctggcgat cgccggcatc
     1621 ccgccgctgg ccgggttctt ctccaaggac gagatcctcg gggaatcgtt caagaacggg
     1681 ttcctgtggg tctgggcgat cgggttcctg gtcgccggcc tgaccgcctt ctacatgttc
     1741 cggctcatgg ggctgacctt ctggggcacg ttccgaggcc cgaaggcggt ctgggacaag
     1801 atccacgaat cgccgccggt catgaccatc ccgctcatcc tgctggcgat cccgtccctg
     1861 ctgctgggca tggcgctcgg cctgccgttc ggggcgaaca cgatcgcggc ctggctcaag
     1921 cccgtcttcg agggcggcca ggccgtcctc cacggtggcg cggaggaagc ggcgttcagc
     1981 ctgttcggga tcgacggcac gctgatcctg gcgagcgtga ccgtcgccgt cgtgggcatc
     2041 gtgatcgcct ggcggctgtt cggtgcggat ctcgccgggc tgcgcgtcac ggcccgcccg
     2101 gaacgcgtcc gcgagctgac cgccagggtc ccgttcctct accgggcctc gctcaacaag
     2161 tggtggttcg acgacctgta ccacctgctc ttcatcgtga tcggcggccg cgtcgcggcg
     2221 gtgatctggt ggttcgaccg cgaggtggtc gacggcaccg tcaacgcgat cgggggcgac
     2281 acgatcgagg tcggccgcgg cctgcgccgg atccagaccg ggcacgtcca gaactacgcg
     2341 ctcggcatcg cggtcgggct gatcgtgatg gccggctcgt acctgctgct cgccggacgc
     2401 tgacgatgga cgtctcgagc atcccgctcc tgtcgatcat catcttcctg ccgctcgtcg
     2461 gcgccttcgt cgtcggcttc ggcccggcgt cggccgcgcg cccggtggcg ctgatcttcg
     2521 ccctgctcgc ctgggtcgcc tcgctcctgc tgctggtcgg ctacctgccc ggccggccgg
     2581 gattccagtt cggggaggtc gccgactgga tcccgttctt cgggatccag tacaagctcg
     2641 gtgccgacgg cctgtcggtg gcgctcgtcg tcctcaccac cacgctctcc tggatctcga
     2701 tcctggccag cttcaagccg atccagacgc ggatcaagga gtacatgatc tcgttcctcg
     2761 tcctcgaggt cgggatgatc ggcgtgttcc tggccctgga cacgttcctc ttctacatct
     2821 tctgggagat cgtgctcgtc ccgatgtacc tgatcatcgg gatctggggc ggcgccaacc
     2881 ggatctacgc cacgatcaag ttcgtgctct acacgctggt cggctcgctg ctcatgctgg
     2941 tcgcgatcct ggccaccgcg tacgcgtacc agaccggcca cgacgggtcg tgggtcggcg
     3001 cgttcgactt cgaggccctg cggagctacg cggcgacggg cggattcgcc gacggcttgc
     3061 agctggcggc attcctggcg ttcttcctcg ccttcgcgat caaggtcccg atgttcccgt
     3121 tccatacctg gctgcccgac gcccacaccg aggcgccgac cgcgggctcg gtgatcctgg
     3181 ccgcgatcat gctgaagctg ggcgcgtacg ggttcatccg gttcgccgtg cccctcttcc
     3241 cggcggcggc gcagacgttc gcgccggcga tcatcgtgct gtcgctgatc gcgatcatct
     3301 acggcgcgat cgtggcgctc gtccagccgg accggaaacg gttggtcgcc tactcctcgg
     3361 ttagccatat gggcttcgtc acgctcggca tcttcgtgtt caccgagcag ggcctccagg
     3421 gcgcggtgct ccagatggtc aaccacgggc tgatcacggg tgccctcttc ctgctggtcg
     3481 gcgtgttcta cgagcgcacc cacgaccgga cgatcgcgaa gatgggcggg ctggccgccg
     3541 gcatgccggt gtgggccgcg gtcttcgggt tcttcgtgtt cgcctccggc ggcctgcccg
     3601 gactgtccgg gttcgtcggc gagttcctgg tcctggtcgg gacgttcacg gccaacccgt
     3661 acgcggccgc ggtcgcatcg ttcgtgatga tcctggcggc cgcgtacctg ctgttcatgt
     3721 tccagcggat cgtgttcggc gagctgtccg acttcctggc cggcctcggg acccacctca
     3781 ccgacatgga gccggtcgag gtcctgacgc tcgtcccgct cggcgtcctg gtcgtcgtct
     3841 tcggcatcca gcccgggctc gtcctgaacc tgttcggaag caccgtcagc gagacgcttg
     3901 acgcggtgcg ggcggcgccg gtgatcggga tcccgaccga ggtccaggtg gccatgatcg
     3961 ggctggtgat cgtcggtatc ctgggccgga tcgggtgggc gctcatgcgg ccccgtcccg
     4021 acgcgggccc cgggacggtc gtgacggccg cctccgaagg gggggccgct cattgacctg
     4081 gcaggacttc gtggtcatcg ccccgctcgt ggccgggatc ctgacggcca gcgggatcat
     4141 ggtcatcgac ctcatccggc ccggccggcc cgccgtcgcg gtggccagcg ccctgatcgg
     4201 cctggcgatc accgccgggc tgaccgccgt cgccggcgca tcgcccgggt ccgcgttcaa
     4261 cggcgcctac cgggtggatg cgctgaccac gttcctcgac ctgctgttcg tcgcgatcat
     4321 cgcgatgacc gtcgtgttcg ggcccgacta cctggtgccg cgcggcctgc cggtcgccga
     4381 gtacgccacg atcctcgtct tcgcgatgac cggggcgatg ctgatcgcgg cgtcgaccga
     4441 cctcctggtc ctcttcctcg ggctcgagct gatggtcctg cccggctaca tgctggcggc
     4501 gttccacaag accgacgcgt actcgaccga aggcgccatc aagtacttcc tgctcggctc
     4561 gttcagctcg gcgatcttcc tgttcggctt ggccttcgtg tggggcctga ccggcacgac
     4621 ccgcgtggac gaggtcgccg cggcactggc ggccgtcgcc gccgggaccg cgccgctgtc
     4681 gccggggctg gcgatgggcc tggcgttcat gacgacgggc gtcgccttca agatcgccgc
     4741 ggtgccgttc cactactgga cgccggatgc gtaccaaggc tcgccgacgc cggtcaccgg
     4801 ctatctgtcc gtgctcccca aggtgggggc gttcgcgctc atcctgcggc tgttcgtcga
     4861 gaccctcggg ccgctgtccg agtggtggct gccggtgatg atcgtgctgg cgacgctgac
     4921 gatgacgctc ggcaacctgg tcgcgctgac ccaggacaac gtcaagcgga tgcttgctta
     4981 cagctccatc gcccacacgg gctacatgct cgtcgggctg gcggcatggg ccggcgacgg
     5041 ccagggccgg atcgacgggc tggaggcgct cctgttctac ggcgcggcct acgcgttcat
     5101 gaacctcggc gcgttcgcgg tcgtggccgc gctccagaag cgcgccggcg tcacctcggg
     5161 gctggcgacg ttcgccgggc tcggaaggcg cgagccgctg ctcgggatcc tgatgacgct
     5221 cttcctgctg tcactcaccg ggatcccgcc gaccgccggg ttcttcgcca aggccaacgt
     5281 gatcatcgcc gccgtcgagg cgggcggacc gctcaccacg ctcgccgtga tcaccgtgct
     5341 caacgcggcc gtcgccgcgt tctactacct gcgggtcgtc gtgtacatgt tcatgcgcga
     5401 gccggccacc gagccgcagg tcatgcgcca cggtgcgctg ttgtggggcg gcctggccgc
     5461 cgcgaccgcc ttgacgatcc tgctcgggct cttcccgacc gccctcctcg aagccgcggg
     5521 ccgcgcagcc caggcgctga tcaccagcta gccgggtggc gccgggcgcg gcgccggtca
     5581 gccgcagacg agcggcttgg ccacggggtg cgcgtccgcc gggtcggcgg cctcctgtga
     5641 cagcggctcg gcgacgacct ggagcttggg caccgtgccc ttgggtcctt cggaggtctg
     5701 cagccagagc tgctcggatg tcgcgttggc cgcgtcggcc aggtccgtct ggtggcggcg
     5761 gacctcggtg atgtcgtaca ggaaccgctg gtcgtcgctg gtccagacct cgaccaccat
     5821 cccgagcatg ctcttgccgt tctggacgag cgaggcgtcg agcaacggca ggaacatccc
     5881 ggtccgcgcg tgggcgtaca ggtaggtcgc gcgtccctgg cccggctgcc cgaggctcgt
     5941 caggtacatc gccacgttgc agtacgggta ggcgttgtcg ccgggcggcg gtgccacgac
     6001 cggaaggtcg atcttgagcg ccgcgatccg gacccgcgtg gcgacccgat cggccggcgc
     6061 cgtgggactc gcggtcggga ggacccccga ttcgagcggg ggaagggtga tcagcggggt
     6121 gctggtgggc ggcgccgtga cggccgacgg cgcgggcgtg ctcagcgagt ccgcggtgac
     6181 gccacccgtc agcgaaagca ggccggccga cagcagcgtg accccgaacg cggtcaggag
     6241 cgcggggacg agtctcgtgc ggatccgctc cgccaggttt gccatgggac cgacatgcta
     6301 gcagcggccc gctcgccgcc gcccccggcc gctcgtactg gtaccctccg cagcgatggg
     6361 gccccgattc gcgatcgccg ccgggctgct cgccggggtc ggcgtggcgg ccatcctgct
     6421 gctcggcctg ctcgtgctcg cgcccgagcc ggcgtcacca ccgacgcccg ccccgtcgat
     6481 cgcgcaggca tcgagctctg gcacgccgtc atccgtcctg tccgcgagcc cggcctccac
     6541 cggtcccgcc accgccagcg cgaccgctcc gtccggcgcc gggttccacg tcggcgagcc
     6601 ggcgcccgcg ctcgtggtgc cgcaggtcgg cggtggcacg atcgacctcg cctcgctcaa
     6661 gggcaaaccg gtctgggtga acttcatggc gacctggtgc ccgccatgcc aggacgagtt
     6721 cccgctgatg agctcgttcg cggctcgcta cgcggacagc gggctcgtgg tcgtcgcgat
     6781 cgacgtccgc gaggacgagg ggacggtcgc ggggttcgcc cagcggctca acgccacgtt
     6841 cccgctcggg ctggacgccg acgggacggc ggccgggcgc tggggcgcca tcgccctgcc
     6901 ggtccacttc tggatcgacg cgcagggcat cgtccgcgac ggtgcggccg gcgggatcgg
     6961 cgccgacacg atggtccacg g
//
LOCUS       DATDDI010000675         1648 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_55974, whole genome shotgun sequence.
ACCESSION   DATDDI010000675 DATDDI010000000
VERSION     DATDDI010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55974"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VIU37_09710"
     CDS             complement(<1..480)
                     /locus_tag="VIU37_09710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014275.1"
                     /translation="MVFPIVTPVNLSPSRQALNDALSALIAAFQAANPGVVRKYWSEV
                     PQSLTGEGPFVYQGPINETIVHDAGTRSTLFEGSIGYVDILADPQETNTRVNTFADFM
                     REWFTANYFVLVNTTVGGVPTPYYGILEQTAFVDGPTELVQGAPVRLTDARVEFRFNP
                     "
     gene            complement(480..959)
                     /locus_tag="VIU37_09715"
     CDS             complement(480..959)
                     /locus_tag="VIU37_09715"
                     /inference="COORDINATES: protein motif:HMM:NF016754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEY6014276.1"
                     /translation="MSEMQGYGALVRRLNAVGSPKAAQGLMRKIALGAVAEQKLLVPK
                     KTGNLARSIHVGVVTATTAQTVASANYAAYVEYGTKPHEITPNAAKALRWVAKGHATR
                     LSGNATKATQRAGGYAFAKRVQHPGTRAHPFMLAGAKLAVAKSPLKDAVIAAWNEAA"
     gene            complement(956..1102)
                     /locus_tag="VIU37_09720"
     CDS             complement(956..1102)
                     /locus_tag="VIU37_09720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014277.1"
                     /translation="MTCLYCRRRRSHVAHLPLPLTGEIVALCPRCVAPAFIAHMRYLL
                     VPHG"
     gene            complement(1311..>1648)
                     /locus_tag="VIU37_09725"
     CDS             complement(1311..>1648)
                     /locus_tag="VIU37_09725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014278.1"
                     /translation="QNSWFDQGADNPFDPRNRGGGYAWTSMPNDLVITGDFGWDSTLG
                     IDEFGGYPSSFLHAVKVLASFYTMRPASILADVAITPAGGVLNYSRLPDEVRTFIADY
                     KIGSMAMSM"
BASE COUNT          252 a          525 c          608 g          263 t
ORIGIN      
        1 cggattgaac cggaactcga cccgggcatc ggtcagacgg acaggggcac cctggacgag
       61 ctcggtcggg ccgtccacga aggcggtctg ctcgaggatg ccgtagtacg gcgtgggcac
      121 gccgcccacg gtggtgttga cgaggacgaa gtagttcgcg gtgaaccact cgcgcatgaa
      181 gtcggcgaag gtgttgaccc gggtgttcgt ctcctgcggg tcggcgagga tgtcgacgta
      241 gccgatggag ccctcgaaga gcgtcgagcg cgtcccggcg tcgtggacga tcgtctcgtt
      301 gatggggccc tggtagacga acggcccctc gcccgtgagc gactgcggga cctcggacca
      361 gtacttgcgg acgacgcccg ggttcgccgc ctggaaggcc gcgatgagcg ccgagagcgc
      421 gtcgttgagc gcctgccggc tcgggctcag gttgaccggg gtgacgatgg ggaagaccat
      481 caggcggcct cgttccacgc cgcgatgacg gcgtccttga gcgggctctt cgcgacggcg
      541 agcttggcgc ccgcgagcat gaacggatga gcacgggtgc cgggatgctg gacgcgcttg
      601 gcgaaggcgt agccgccggc ccgctgcgtc gccttcgtcg cgttgcccga gagccgcgtg
      661 gcgtggccct tggcgaccca gcgcagcgcc ttcgcggcgt tcggggtgat ctcatgcggc
      721 ttcgtcccgt actcgacgta ggccgcgtag ttcgcgctgg cgaccgtctg cgccgtcgtg
      781 gcggtcacga cgccgacgtg gatggaccgg gcgaggttgc cggtcttctt cggcacgagg
      841 agcttctgct cggccacagc gccgagcgcg atcttccgca tgaggccctg cgcggccttc
      901 ggactcccga ccgcgttgag ccgtcggacg agcgcgccgt agccctgcat ctcgctcatc
      961 cgtgaggtac cagcaggtag cgcatgtggg cgatgaaggc gggcgcgacg cagcgcgggc
     1021 agagggccac gatctcaccc gtgagcggca gcggcaggtg cgcgacgtgg gaccggcgac
     1081 gccggcagta gaggcaggtc atcggacgcc tcgcggcgtg acggtctgcg gtccggcgat
     1141 ggcgttggtc ctgactgcac ggacggagcc agtgccagcg gcatctcgcc gtccggcttc
     1201 ataacctcgt cggtacgcct caccgacggc atctaccagc acgtcggcca tctcgggcca
     1261 atccttcgcg gcccggatgc gctggccgag gaacatgcgc cagagctcgc tcacatcgac
     1321 atcgccatcg agccgatctt gtagtcggcg atgaaggtcc gcacctcgtc gggcaggcgc
     1381 gagtagttca ggacgccgcc cgccggggtg atggcgacgt cggcgaggat cgatgccggg
     1441 cgcatcgtgt agaaactggc gagcaccttg acggcatgga ggaacgaaga gggatagccg
     1501 ccgaactcat cgatgccgag cgtgctgtcc cagccgaagt cgcccgtgat gacgaggtcg
     1561 ttcggcatcg aggtccaagc gtagccgccg ccgcggttgc gcgggtcgaa cgggttatcg
     1621 gcgccctgat cgaaccacga gttctgcc
//
LOCUS       DATDDI010000676         3089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_742538, whole genome shotgun sequence.
ACCESSION   DATDDI010000676 DATDDI010000000
VERSION     DATDDI010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_742538"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1083)
                     /locus_tag="VIU37_09730"
     CDS             complement(<1..1083)
                     /locus_tag="VIU37_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006680774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEY6014279.1"
                     /translation="MNPKFFRNGIVMLVLVVGTAALLFTWLTQSSSTADTPYSDFLTK
                     VQTGQVAKVVQQDSTLTVTAKDGAQYTVIAPGLAGLHDVYADIKAAAERGNVTLANDF
                     YAAKQAPDTSWLGLLLTGLLPLLVIGGFIFFMMRQAQGTNNQALSFGKSRARMFLGNK
                     TVVTFNDVAGVDEAKTELQEVVEFLKYPEKFNSLGARIPRGVLLVGPPGTGKTLMARA
                     VAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNSPCIVFVDEIDAVGRQRGA
                     GLGGSHDEREQTLNQILVEMDGFDTNTNVIVVAATNRPDVLDPALLRPGRFDRQVILD
                     RPDMKGRVEILKVHTKGKPLDKGVDVE"
     gene            complement(1353..1427)
                     /locus_tag="VIU37_09735"
     tRNA            complement(1353..1427)
                     /locus_tag="VIU37_09735"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1393..1395),aa:Met,seq:cat)
     gene            complement(1441..2010)
                     /locus_tag="VIU37_09740"
     CDS             complement(1441..2010)
                     /locus_tag="VIU37_09740"
                     /inference="COORDINATES: protein motif:HMM:NF021252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-GCAxxG-C-C family protein"
                     /protein_id="HEY6014280.1"
                     /translation="MDDDPRRSDAAVRRARDRFLESANAYGCAEATLVALRASFDLPD
                     ADDSSPAIALNGGFAYSGGTCGALTGAGLAVGQLAERRLGDHRIAKSTTRAVVQSALD
                     AFAAEFGSTDCRDLIGVDLRAPGGHDAFIASGIWRERCMRQIEFVVRRLAPLSGASDW
                     DPGSADEAERRMDLPGTARDPVAGPDRAR"
     gene            complement(2091..2591)
                     /locus_tag="VIU37_09745"
     CDS             complement(2091..2591)
                     /locus_tag="VIU37_09745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014281.1"
                     /translation="MRTPPPEDPLDEERAADVPGALDGSSHDIAEPDLSALPIVGLSQ
                     RRLATMVGVLVAAWIIILFARQVGDASAASARADAMIADNAARKAQVAALDRELARIQ
                     QSRFVLLQARAHGLGGRNEIAFTLEPDAPPLPSNAPGSAALRVGAPDPVSPLDHWLAL
                     LFGSGG"
     gene            2736..>3089
                     /locus_tag="VIU37_09750"
     CDS             2736..>3089
                     /locus_tag="VIU37_09750"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6014282.1"
                     /translation="MRTYAPRDTASVLDAILAEPSMARGVVHHALLPAREAAFGEFPE
                     WLDPRIVEGLAQRAIERPYVHQAAAMELARAGRDFVVVTPTASGKTLCYALPILQAIA
                     DDPAARSLLLFPTKAL"
BASE COUNT          465 a         1072 c         1079 g          473 t
ORIGIN      
        1 ctcgacgtcg acgcccttgt cgagcggctt gcccttggtg tgcaccttga ggatctcgac
       61 gcgccccttc atgtcggggc gatcgaggat gacctgacgg tcgaagcggc ccgggcgcag
      121 gagcgccggg tcgagcacgt cgggccggtt ggtggcggcg accacgatga cgttcgtgtt
      181 cgtgtcgaag ccgtccatct cgacgaggat ctggttgagg gtctgttcgc gctcgtcgtg
      241 gctgccgccg aggccggcac cgcgctggcg gccgacggcg tcgatctcgt cgacgaagac
      301 gatgcacggc gaattgcgct tggcctggtc gaacaggtcg cggacgcgac tggcgccgac
      361 gccgacgaac atctcgacga actcggagcc ggagatgctg aagaacggaa cccccgcctc
      421 gccggcgacc gcccgggcca tcagggtctt gccggtgccg ggggggccga cgagcaggac
      481 gccgcgcggg atccgggcac ccagcgagtt gaacttctcc gggtacttga ggaactcgac
      541 cacttcctgg agctcggtct tggcctcgtc gacgccggcc acgtcgttga acgtgacgac
      601 ggtcttgttg ccgaggaaca tccgggcgcg gctcttgccg aacgagaggg cctggttatt
      661 ggtcccctgc gcctgtctca tcatgaagaa gatgaagccg ccgatgacca gcaacggcag
      721 cagaccggtc aacagcaatc cgagccacga cgtgtccggg gcctgcttgg cggcatagaa
      781 gtcgttggcg agcgtgacgt tgccgcgctc ggcggcggcc ttgatgtcag cgtagacgtc
      841 gtgcagaccg gccaggcccg gtgcgatgac cgtgtactgg gccccgtcct tcgccgtcac
      901 ggtcagggtg gagtcctgct ggacgacctt ggcgacctgc ccggtctgga ccttggtcag
      961 gaaatcggag tagggcgtgt ccgcggtgct ggacgactgc gtcaaccacg tgaacagcag
     1021 cgccgcggtg cccacaacga gcaccagcat cacgatgccg ttgcggaaga acttggggtt
     1081 caaaaggagc ctccggatcg aagtggcgcc ggccgtgcgt cgccaatggc agcgagtata
     1141 ccgtcgagtc tcgcgacgcc cccctgacgg aggtcctggt ccacgctccc ggatacgggc
     1201 gccacgctca gccggatggt cgcggccgcc agggtgaagg attcgacatc gcatctccac
     1261 cgcgcctgcg catccggagc cggtccgtcg cggccgccgg gaatcgaaac gcccctccgg
     1321 tcgtccggag gggcgttgct catgtcaggg tctggtagcg gagggcggat ttgaaccacc
     1381 gaccaagggc ttatgagtcc cctgctctac cactgagcta ctccgccaca gccatctagc
     1441 ttaccgggcc cggtccggcc cggcaacagg gtcgcgggcc gttccgggca aatccatccg
     1501 ccgttcggcc tcgtcggcgc tgcccgggtc ccagtccgac gcgccggaga gcggcgccag
     1561 gcggcgcacc acgaactcga tctggcgcat gcagcgctcc cgccagatcc cggaagcgat
     1621 gaacgcgtcg tggccgcccg gggcccgcag gtccacgccg atgaggtccc ggcaatcggt
     1681 cgatccgaat tcggcggcga acgcgtcgag cgccgactgg acgacggcac gggtcgtcga
     1741 cttggcgatc cggtggtcgc cgagccgccg ctcggcgagc tggccgacgg cgagccccgc
     1801 gccggtcagc gccccgcagg ttccgccgct gtaggcgaac ccgccgttga gcgcgatcgc
     1861 cggcgacgaa tcgtcggcat ccggcaggtc gaaggaggcc ctgagcgcca ccaatgtggc
     1921 ctcggcgcaa ccgtaggcgt tggcggattc caggaagcgg tctcgagctc gtcggaccgc
     1981 cgcatccgat cggcgtgggt cgtcatccac cggcatcgct gtctcacccg ctggcgcgcg
     2041 atggacccgg agcggcccga tcgccccggc gattctagct tcggccgcga tcagccaccg
     2101 gagccgaaca ggagcgccag ccagtggtcg agcgggctga ccgggtcggg cgcgccgacg
     2161 cgcaatgccg ccgagccggg ggcgttcgag ggaagcggcg gcgcgtcggg ctcgagggtg
     2221 aacgcgatct cgttgcggcc accgagcccg tgcgcacgcg cctgcaggag gacgaaccgc
     2281 gactgctgga tccgggccag ctcgcggtcg agcgcggcca cctgtgcctt gcgcgccgcg
     2341 ttgtccgcga tcatcgcgtc ggcccgggcc gatgccgcgg aggcatcgcc gacctggcgg
     2401 gcgaacagga tgatgatcca ggcggcgacc agcacgccga ccatcgtcgc cagcctgcgc
     2461 tggctcagcc cgacgatggg gagcgcgctg agatcgggct ctgcgatgtc atgcgaggac
     2521 ccatcgagcg cgccggggac gtcggccgca cgctcctcgt cgagcgggtc ttcgggcggc
     2581 ggcgtgcgca tccggcgaac cattccggcg agcgtagcta cgcttcggag cggtgtcaac
     2641 ccgatccgcc tgtgacagcc gagctgtcac gacccgcgtg catcgtctgc tagactcgcg
     2701 acgtttcgca catgcgttct gtttgaggct cgccgatgcg cacctatgcc cccagggaca
     2761 cggcgtcggt cctggatgcc atcctcgcgg agccatccat ggcgcgtggc gtggtccacc
     2821 acgcgctcct ccccgcccgc gaagccgcct tcggcgagtt tccggagtgg ctcgatccgc
     2881 ggatcgtcga ggggctggca cagcgtgcga tcgaacgacc ctacgtccac caggccgcgg
     2941 ccatggagct cgcccgcgcg ggacgcgact tcgtcgtggt cacgccgacg gcgtccggca
     3001 agaccctctg ctacgccttg cccatcctgc aggcgatcgc cgacgatccc gccgcccgct
     3061 cgctcctcct cttccccacc aaggcgctc
//
LOCUS       DATDDI010000677         2354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_368433, whole genome shotgun sequence.
ACCESSION   DATDDI010000677 DATDDI010000000
VERSION     DATDDI010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368433"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..964
                     /locus_tag="VIU37_09755"
     CDS             <1..964
                     /locus_tag="VIU37_09755"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014283.1"
                     /translation="ISAADRIASVDGVDLVVPGISMLLADEAASMSMSMPQMIQGGIP
                     GADQGRETFPVSYASGRALTPADEGTNVAVLGSDIARQHDTRVGDTITLHGEPFQVVG
                     ILEPTLTAPDVSVVVPLEAAQRLYVKTLPPLVAAKLDPATVATGFTVYPKPGADPEAI
                     ATEIRATAPDLEPMTARDFNSQIGSATSILNSILVGIALISLAVGGLSVINTMAMSVA
                     ERTREIGIKRAIGGGRLRIVRELVTESALIGFLGGATGLVLGAVLVTVVNEAGRSSGT
                     VLFQLTTGTALTAVGFSTVLGALAGLIPAMHAARLDPVTALRYE"
     gene            997..1752
                     /locus_tag="VIU37_09760"
     CDS             997..1752
                     /locus_tag="VIU37_09760"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014284.1"
                     /translation="MTATALLEGRNLRKTYRLGRRTTVEALRGVDVRIESGEMVAIMG
                     PSGSGKSTLMHILGLLHAPDANHGPSPELTFDGRDMVNLGEGERTKIRARQMGFVFQD
                     FNLVPTLTAIENVMLACDYAGIRGAPARALAAEALALVDLADRADHRPAELSGGEQQR
                     VAIARALVNKPSLILADEPTGNLDSERSAEVLDLLRRFNQEHGQTFILVTHDPDVAAA
                     CDRVIRVRDGRIRDQSLAAVPQPLDLDAREAVA"
     gene            complement(1775..>2354)
                     /locus_tag="VIU37_09765"
     CDS             complement(1775..>2354)
                     /locus_tag="VIU37_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003218092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminoacyl--tRNA ligase-related protein"
                     /protein_id="HEY6014285.1"
                     /translation="AEVPVTNLHRDEILEADQLPIRYAAYTPCFRREAGAAGKDTRGI
                     LRVHQFDKVEMVLFEKPEDSAAALEWMTERAEILIQRLGLAYRVLLMATRDMGFTQAR
                     KYDLEVWAPGVERWLEVSSCSNFRDFQARRMAIRYRPEPGAKPELVHTLNGSGLALAR
                     IVAAILETYQQADGSVTVPEVLRPYLRRDSIE"
BASE COUNT          359 a          850 c          806 g          339 t
ORIGIN      
        1 catctccgcc gcggaccgga tcgcgtccgt agacggcgtg gacctcgttg tccccgggat
       61 ctcgatgctg ctggcggatg aagcggccag catgtcgatg agcatgcccc agatgatcca
      121 gggcgggatc cccggcgccg accagggacg cgagacgttc ccggtctcgt acgccagcgg
      181 acgcgccctg acccccgccg acgagggcac gaacgtcgcg gtcctcggct ccgacattgc
      241 gcgccagcac gacaccaggg tcggcgacac gatcaccctc cacggcgaac cgttccaggt
      301 cgtcgggatc ctcgaaccga cgctgaccgc ccccgacgtg tcggtggtgg tgccgctcga
      361 agccgcccag cggctgtacg tcaagacact gcccccgctg gtcgcggcga agctcgaccc
      421 cgcgacggtg gcgaccgggt tcacggtcta ccccaagccc ggcgccgacc ccgaggcgat
      481 cgcgaccgag atccgggcga ccgcacccga cctcgagccg atgacggcca gggacttcaa
      541 cagccagatc ggttcggcaa cgtcgatcct caactcgatc ctcgtcggga tcgcgctcat
      601 cagcctcgcg gtcggcggcc tgtcggtcat caacacgatg gcgatgtccg tggcggagcg
      661 aacgcgcgag atcggcatca agcgcgccat cggtggcggt cgcctgcgga tcgtccgcga
      721 gctcgtcacc gagtccgccc tgatcgggtt cctgggcggc gccaccgggc tcgtcctggg
      781 cgcggtgctg gtcaccgtgg tcaacgaggc gggccgctcg tccgggaccg tcctgttcca
      841 gctgacgacg ggcaccgcgc tgaccgcggt cggcttctcg accgtcctcg gcgccctggc
      901 gggcctcatc cccgccatgc acgcggcccg gctcgacccg gtcaccgcgc ttcgctacga
      961 atgaccaccc accacagaga caacggagaa cgaacgatga ctgccacggc actgctcgaa
     1021 ggccgcaacc tgcggaagac gtatcgcctg ggacggcgca ccaccgtcga ggccctgcgg
     1081 ggcgtcgacg tccggatcga gtccggcgag atggtcgcga tcatgggtcc gtccgggtcg
     1141 ggcaagagca ccctcatgca catccttggc ttgctccacg cgccagacgc gaaccacggc
     1201 cccagtccgg agctgacctt cgacggccgg gacatggtca acctgggcga gggcgagcga
     1261 acgaagatcc gggcccgcca gatgggcttc gtgttccagg acttcaacct cgtcccgacc
     1321 ctgaccgcga tcgagaacgt gatgctcgcc tgcgactacg ccgggatccg gggagccccg
     1381 gctcgcgcgc tggccgccga agccctggcg ctggtcgacc tcgctgaccg tgccgaccat
     1441 cggccggccg agctgtccgg tggcgagcag cagcgcgtcg cgatcgcccg ggcgctggtc
     1501 aacaagccct cgctgatcct ggccgacgag ccgaccggca acctcgactc cgagcggtcg
     1561 gccgaagttc tggatctcct gcggcggttc aaccaggaac acggccagac cttcatcctg
     1621 gtcacccacg acccggacgt ggccgccgcg tgcgaccgcg tgatccgcgt ccgcgacggc
     1681 cggatccggg accagtcgct cgcggcggtg ccgcagccgc tggacctcga cgccagggag
     1741 gccgtggcct gacgttcgga cgtccgccgg cggcctactc gatcgagtcg cggcgcaggt
     1801 acggccggag gacctccggc acggtcaccg agccgtccgc ctgctggtac gtctccagga
     1861 tggccgccac gatccgggca agcgcgaggc ccgagccgtt cagcgtatgg acgagctcgg
     1921 gcttcgcgcc gggttccggc cggtagcgga tcgccatccg gcgcgcctgg aagtcgcgga
     1981 agttcgagca ggagctgacc tcgagccagc gctcgacacc cggcgcccag acctcgaggt
     2041 cgtacttgcg ggcctgggtg aagcccatgt cgcgggtcgc catcagcagc acccggtagg
     2101 ccaggcccag gcgctggatc aggatctccg cgcgttcggt catccattcg agtgcggccg
     2161 cggagtcctc gggcttctcg aacaggacca tctcgacctt gtcgaactgg tggacgcgca
     2221 ggatgccgcg ggtgtccttg ccggccgcgc cggcctcgcg tcggaagcac ggcgtgtagg
     2281 cggcgtagcg gatcggaagt tggtcggcct cgaggatctc gtcgcgatgg aggttggtga
     2341 ccgggacctc ggcg
//
LOCUS       DATDDI010000678         2969 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_493186, whole genome shotgun sequence.
ACCESSION   DATDDI010000678 DATDDI010000000
VERSION     DATDDI010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493186"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..1368
                     /locus_tag="VIU37_09770"
     CDS             211..1368
                     /locus_tag="VIU37_09770"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014286.1"
                     /translation="MLRLLASPRAAGVIGCLTLLLIGWSGLLVPSLIRSIELDFRQTD
                     AGIGTFYLVWAIAYAVGSLGGGVVTERIGRRRILIAAALAHGLGLAVVALVPPWGVAL
                     AAAVPAGLGAGALDGGSNGLILDLYQAARGRALNILHLFFSIGALSSPLVVGQLVDAG
                     VAWQGILIATAVVFVPLAGLYAVASLPDGRHVAAPRESGARRATPIAFTWPLLTLEVA
                     IACYVAAEVGVSNWLVRFLDTVPLGTATGALSLFWAGLALGRLISARIADRFDHLQFT
                     IVATTIAGIATFAAVLVPSVGASILLFGLVGFASGPVFPMIVAVAGDRFPQRSAAVGG
                     FMAGASVAGSSLYPPIMGFMSVSVGLSAAMLGAGLLSLACAVSLLAARRLH"
     gene            1403..2380
                     /locus_tag="VIU37_09775"
     CDS             1403..2380
                     /locus_tag="VIU37_09775"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6014287.1"
                     /translation="MNAPRHREPVRWGILGTGGITRSLLRGARRSDAVEVVAVGSRTP
                     DRASEYAREHGIARAHGSYEALLAAPDVEAVYISLPNSLHHPWTMQALRAGKHVLCEK
                     PYTRHPADVAAAFDAAEHAGLVLCEAFMWRHHPQARAIVELLPEIGELQTIRATFSFV
                     LDRPNDIRLRADLDGGSLMDVGTYCVSGARLLTGEEPELVFGTQVIGPSGVDVRFNGL
                     MRFPGGAVAEIMSSFETDHRGLEAIGSEGSVRLTNPWLPNDPDPVLIRDGVETPIDFF
                     DPYQLELEDVSAAIRDRRLPLLGRADALGQARAIEALYRSADTGLPVRP"
     gene            2485..2877
                     /locus_tag="VIU37_09780"
     CDS             2485..2877
                     /locus_tag="VIU37_09780"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014288.1"
                     /translation="MTSFAGAENRAVHLDPRAKLEILGAILLALFLFALDQTVVGTAL
                     PVIVTDLHGNDLYTWVVTVYLLTSTISGPIYGKLSDLFGRRPIIIFAVVLFLVASVLS
                     GLSQEMWQLILFRGLQGLGGGGCLLGLQ"
BASE COUNT          372 a         1068 c         1007 g          522 t
ORIGIN      
        1 ttgagccagt agccgcgaac cttgacgtca gtcgagctgg cgtcgaacag cgaacgcgac
       61 ccgcccttgc cgtacgggca gtcctgtggc gcatgcgtct gcttgatgtg gaagagcacg
      121 ggacgatcct ttccgggtcg ccggcgatcg acgcgacccc ggcacagggt aagtcggcag
      181 ggcccggtcc tgcaccgcta cgattcgacc gtgctccgat tgctggccag cccgcgagcc
      241 gcgggcgtca tcggctgcct gaccttgctc ctcatcgggt ggtcggggct gctcgtgccg
      301 tcgctcatcc gctcgatcga gctcgacttc cgccagacgg acgcggggat cgggaccttc
      361 tacctcgtgt gggccatcgc ctacgccgtc ggctcgctgg gcgggggcgt ggtcaccgag
      421 cggatcgggc ggcgccggat cctgatcgcg gcggcgctgg cccacgggct cggccttgcc
      481 gtcgtggcac tcgttccccc gtggggcgtc gccctcgcgg ccgccgtccc ggcgggcctg
      541 ggagccggcg cgctcgacgg tggttcgaac ggactcatcc tcgacctcta ccaggcggcg
      601 cgcggccggg cgctcaacat cctccacctg ttcttcagca tcggcgcgct gtcctcgccg
      661 ctcgtcgtgg gccagctcgt ggatgcgggc gtcgcctggc aggggatcct gatcgcgacg
      721 gctgtcgtgt tcgtccccct ggccggtctc tacgcggtgg cgagcctccc ggacgggcga
      781 cacgttgcgg ccccgagaga gagcggggcc cgcagggcca cgccgatcgc cttcacctgg
      841 ccgctgctca cgctcgaagt ggcgatcgcc tgctacgtgg cggccgaggt cggcgtctcg
      901 aactggctcg tccgcttcct cgacaccgtg ccgctcggga ccgccaccgg tgcgctgtcg
      961 ctgttctggg cgggcctggc gttgggccgc ctgatctcgg cccggatcgc cgaccgcttc
     1021 gatcacctgc agttcacgat cgtcgccacc acgatcgcgg gaatcgcgac gttcgccgcg
     1081 gtgctggtgc cgtcggtcgg cgcgtcgatc ctgctgttcg gcctggtcgg gtttgcctcc
     1141 gggcccgtct tcccgatgat cgtggccgtt gccggcgatc ggttcccgca gcgatcggcc
     1201 gccgtgggcg ggttcatggc cggcgcctcg gtcgccggct cgtcactcta tccgccgatc
     1261 atggggttca tgtcggtgag cgtcgggctg tccgcggcga tgctcggcgc cggcctgctg
     1321 agcctggcct gtgccgtctc gctgctggcc gcccgccggc tgcactaggc tgtcctgacg
     1381 tcaccgactg cctggaggac ccatgaacgc accccgccat cgcgagcccg tccgctgggg
     1441 catcctcggg accggcggca tcacgcggtc gctcctgcgc ggcgcgcgtc gcagcgacgc
     1501 ggtcgaggtc gtggcggtcg gcagccgcac gccggatcgt gcgtcggaat acgctcgtga
     1561 gcacgggatc gccagggccc acgggtccta tgaggcgctc ctcgccgccc ccgacgtcga
     1621 ggccgtctac atctcgctcc cgaactcgct ccatcacccc tggacgatgc aggcgctccg
     1681 ggcgggcaag cacgtcctgt gcgagaagcc gtacacccgc caccccgccg acgtggccgc
     1741 ggccttcgat gccgccgagc acgccggcct ggtgctgtgc gaggcgttca tgtggcgcca
     1801 ccacccgcag gcccgggcca tcgtcgagct gttgcccgag atcggcgagc tgcagacgat
     1861 ccgcgccacg ttcagcttcg tgctggatcg gccgaacgac atccggctcc gcgcggatct
     1921 cgacgggggc tcgctgatgg acgtcggcac gtactgcgtg tcgggggcgc ggttgctgac
     1981 cggggaggaa ccggagctcg tgttcggtac ccaggtcatc ggtccgagcg gcgtcgacgt
     2041 ccgattcaac gggctgatgc gcttcccggg cggtgcggtc gccgagatca tgtccagctt
     2101 cgagaccgac caccgcggcc tggaggcgat cggcagcgag ggctccgtcc gcctcaccaa
     2161 cccgtggctc ccgaacgacc cggatcctgt cctgatccgt gacggcgtgg agacgccgat
     2221 cgacttcttc gatccctacc agctcgagct ggaggatgtc agcgccgcga tccgcgaccg
     2281 ccggctgccg ctgctgggcc gggctgatgc gctgggccag gcccgcgcga tcgaggcgct
     2341 ctaccggtcg gccgacacgg gacttccggt ccggccctga acgtccgccg cgacccgcag
     2401 cgctcgcgca cgatccgggg gctcccgata agctagaccg cgcccagatc cgtcacggat
     2461 cgatcgtccc tggggagtgt tcgcatgacg tcattcgccg gcgcggagaa ccgcgccgtc
     2521 catctcgacc ctcgcgccaa gctcgagatc ctcggcgcga tcctgttggc gctgttcctg
     2581 ttcgcgctcg accagacggt cgtcggcacg gccctgccgg tcatcgtgac ggatctccat
     2641 ggaaacgacc tgtacacctg ggtcgtcacg gtctacctgc tgacctcgac gatcagcggc
     2701 cccatctacg gcaagctgtc cgacctgttc ggccggcgcc cgatcatcat cttcgcggtg
     2761 gtcctgttcc tggtggcgtc cgtcctgtcc ggcctcagcc aggagatgtg gcagctgatc
     2821 ctgttccgcg gcctgcaggg actcggcggc ggcggctgct tgttggggct acagtagccg
     2881 aaacccagga cgacccatca aatctttccc aggtagaaac aagactccag tcgccacttt
     2941 gcctggaacg ataatcacca attgcgttt
//
LOCUS       DATDDI010000679         1523 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_493200, whole genome shotgun sequence.
ACCESSION   DATDDI010000679 DATDDI010000000
VERSION     DATDDI010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493200"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VIU37_09785"
     CDS             <1..597
                     /locus_tag="VIU37_09785"
                     /inference="COORDINATES: protein motif:HMM:NF013155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014289.1"
                     /translation="NEIIAEKAILWRDRGVVGIDIAGPESATFRVADYRRLFRRARQY
                     GLGITVHTGESGPVDEVARVVELLEPDRIGHGVKAAYDPRAMAMLRERGIVLEICPTS
                     NLNTRVVSGWEEFRWIFDTFRRNEVRFTINTDGPEMLKTYIRDEMAQLGRLGILSVAD
                     QELAAATALAASFVPNVSDVPAPSMAPASRVVVEREEA"
     gene            complement(619..1323)
                     /locus_tag="VIU37_09790"
     CDS             complement(619..1323)
                     /locus_tag="VIU37_09790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014290.1"
                     /translation="MSEPQLSAAADSRPSSQPAAVSGPSNLRRDLLLRLRVDGPSTPD
                     QLAARLGASRTGVLQQLRALETAHLVSRQTIRHGVGRPRHLYDITADAQDLFPSGYEG
                     LAAGLLAAIEAVGGNDLLEEVFAARCRQLSARVREDMAARVPEDAPLLDRVQELAVIQ
                     SAHGYLAGAVLNVDGTVRLQEHNCAIFHVASGSPAACQAELELFSDVLGADVVREQHI
                     TEGDRCCSYRISARPS"
BASE COUNT          219 a          534 c          554 g          216 t
ORIGIN      
        1 aacgagatca tcgcggagaa ggcgatcctc tggcgcgacc gcggcgtggt gggcatcgac
       61 atcgccggcc ccgaatccgc gaccttccgc gtcgccgact atcgccgcct cttccggcgg
      121 gcccgccagt acggcctcgg catcaccgtg cacacgggcg agtcggggcc ggtcgacgag
      181 gtcgccaggg tcgtcgagct gctcgagccg gaccgcatcg gccacggcgt caaggcggct
      241 tacgacccgc gcgcgatggc gatgctccgg gagcgcggga tcgtgctcga gatctgcccg
      301 acctcgaacc tcaacacccg ggtcgtctcc ggttgggagg agttccgctg gatcttcgat
      361 acgttccgtc gcaacgaggt ccggttcacg atcaacaccg acggccccga gatgctcaag
      421 acgtacatcc gcgacgaaat ggcgcagctc ggccggctcg ggatcctgtc ggtcgccgac
      481 caggagctgg cggccgccac ggcactggcc gcgtccttcg tcccgaacgt gtcggacgtg
      541 cctgccccca gcatggcccc ggcgtcgcgc gtcgtcgtcg aacgcgagga agcgtagcgc
      601 cgggcgacgg ggcccgggtc aggacgggcg cgcgctgatc cggtacgagc agcagcggtc
      661 gccctcggtg atgtgctgct cgcggacgac gtcggccccg agcacgtcgc tgaacagctc
      721 gagctcggcc tggcaggcgg ccggcgagcc cgacgcgacg tggaagatcg cgcagttgtg
      781 ctcctggagc ctgaccgtcc cgtcgacgtt gaggaccgcc ccggccaggt acccgtgggc
      841 cgactggatg accgccagct cctggacccg gtcgagcagg ggcgcgtcct ccggcacccg
      901 ggccgccatg tcctcccgga cgcgagcgct gagctgccgg cagcgcgcgg cgaagacctc
      961 ctcgagcagg tcgttcccgc cgacggcctc gatcgccgcg agcaacccgg cagcaaggcc
     1021 ctcgtagccc gatgggaaga ggtcctgcgc atcggccgtg atgtcgtaca ggtggcgggg
     1081 ccgtccgacg ccgtgccgga tcgtctggcg gctgacgagg tgggccgttt cgagcgcccg
     1141 cagctgctgg aggacaccgg tccggctcgc gccgagtcgg gcggcgagct ggtcgggcgt
     1201 gctcggcccg tcgacacgca gccggagcag caggtcgcgc cggagattcg atggtccgct
     1261 gacggccgct ggctgggacg acggcctgga gtccgccgca gccgacagtt ggggctcgga
     1321 catggcgaca ggctagcact ggcgacggcg gtgcgctgtc gcgtgtaggc tccgaggatg
     1381 gacttcgatc tctcccacga gcaccagctc ctgcgcgaca ccgttcgcga cttcatggtc
     1441 agcgaggtgg cgccgatcgt cgacgcacac gagcgcgagc gccggttccc ggtcgacatc
     1501 gtccgacgga tcggcgagct cgg
//
LOCUS       DATDDI010000680         1774 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_285125, whole genome shotgun sequence.
ACCESSION   DATDDI010000680 DATDDI010000000
VERSION     DATDDI010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285125"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /gene="xseA"
                     /locus_tag="VIU37_09795"
     CDS             <1..848
                     /gene="xseA"
                     /locus_tag="VIU37_09795"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEY6014291.1"
                     /translation="VQGDGAPASLVAALHKVERYAAERTAAGHPEQAPSVTILARGGG
                     SLEDLWAFNDERVVRAVVGHALPLVCGVGHEADVTLSDFAADVRAPTPSAAAEIVVPD
                     RQEALGGVRAFGRRLGAAAAARVGAAAREVAAERRALDRLGPGAQLASTRERVGLLLD
                     RATRAINDRIVVERQVTGRLGPRLGGVLPGRLARDRAQLERYERIHGLAGGRVARGRA
                     SLDSAVAALQVLGPQATLERGYAIVRRGVDERIVRDPAEAPPGTRLTLRVARGELPAT
                     ADPRA"
     gene            841..978
                     /locus_tag="VIU37_09800"
     CDS             841..978
                     /locus_tag="VIU37_09800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014292.1"
                     /translation="MPELAVFLAIAAVVAVAGIRVGMLLAPRLDRMTEPHDEDDGADT
                     D"
     gene            962..1240
                     /gene="xseB"
                     /locus_tag="VIU37_09805"
     CDS             962..1240
                     /gene="xseB"
                     /locus_tag="VIU37_09805"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR01280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEY6014293.1"
                     /translation="MPTPTEPAIDGLGFDDALAELQRTVAELEAGGQPLEGAIALYER
                     GVALQARCEKLLGDAELRVQQLVARAGGAIETRDVSPEDAADEGTPGT"
     gene            complement(1237..>1774)
                     /locus_tag="VIU37_09810"
     CDS             complement(1237..>1774)
                     /locus_tag="VIU37_09810"
                     /inference="COORDINATES: protein motif:HMM:NF019643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BBE domain-containing protein"
                     /protein_id="HEY6014294.1"
                     /translation="GMPLTSDEIRPMTYLELQAVSGRIPFGLRHYWKGHFLRAMSGDV
                     VAGVADSLTAPRGALGGILIEALRGAARREPDGGAAFGQREATWNATGLAIWQDEADD
                     AEEIAWARSVADRLAGASLTGVGYANYAPADEPAGRVRLAFGPERFERLRRVKGRYDP
                     DNRFRFNLNVPPPADGAG"
BASE COUNT          219 a          662 c          673 g          220 t
ORIGIN      
        1 aggtccaggg cgatggggcg ccggccagcc tggtggccgc gctccacaag gtggagcggt
       61 acgcggcgga gcggacggcc gccggccatc ccgagcaggc gccgtcggtc acgatcctgg
      121 cgcgcggcgg cggttcgctc gaggacctgt gggcgttcaa cgacgagcgg gtggttcgcg
      181 cggtggtggg gcacgccctg ccactggtct gcggcgtcgg acatgaggcc gacgtgacgc
      241 tgtcggactt cgcggccgac gtccgtgcgc caacgccgtc cgcggccgcc gagatcgtcg
      301 tgccggaccg ccaggaggcg ctcggcgggg ttcgtgcctt cgggcgacga ctcggcgcgg
      361 ccgccgccgc ccgggtcggt gccgcagccc gggaggtggc cgccgagcgg cgcgcgctcg
      421 accggctcgg gccgggggca cagctcgcct cgacgcgcga acgagtcggc ctgctcctcg
      481 accgggccac tcgcgccatc aacgaccgga tcgtggtcga acgccaggtc accggccggc
      541 tcggcccacg gctgggcggg gtcctgcccg gccggctggc ccgcgaccgg gcgcagctcg
      601 agcggtacga gcggatccac ggcctggccg gcggacgggt cgcccggggt cgcgcctcgc
      661 tggacagcgc cgtcgccgcg ctccaggtgc tcggcccgca ggccaccctc gaacgtggct
      721 acgcgatcgt gcgcaggggc gtcgacgagc gcatcgttcg cgatccggcg gaggcgccgc
      781 ccgggacgcg gctcacgctc cgcgtggcac gcggcgagct ccccgccacg gccgatccgc
      841 gtgcctgagc tggccgtctt cctggcgatc gccgcggtcg tggcggtggc cgggatccgg
      901 gttggtatgc tccttgctcc acgcctcgac cggatgaccg aaccccacga tgaggacgat
      961 ggtgccgaca ccgactgaac ccgcgatcga cggcctgggc ttcgacgacg cgctggccga
     1021 gctccagcgg accgtcgccg agctcgaggc cggcggacag ccgctcgagg gggccatcgc
     1081 gctgtacgag cggggcgtcg ccctccaggc gcgttgcgag aagctgctcg gcgatgccga
     1141 gctgcgggtg cagcagctgg tcgcccgcgc cggcggcgcg atcgagactc gcgacgtcag
     1201 cccggaggac gcagcggacg agggaacgcc gggaacctag cccgcgccgt cggccggcgg
     1261 cggcacgttg aggttgaagc ggaaccggtt gtccgggtcg taccgcccct tgacccgacg
     1321 cagccgctcg aaccgctcgg gaccgaaggc cagcctgacc cgcccggcgg gctcatccgc
     1381 cggggcgtag ttcgcgtagc cgacgccggt cagcgaggcc cccgcgagcc ggtccgcgac
     1441 ggaccgagcc caggcgatct cctcggcgtc gtccgcctcg tcctgccaga tcgccaggcc
     1501 ggtcgcgttc caggtcgcct cgcgctggcc gaacgcggcg cctccgtccg gctcgcgccg
     1561 cgcggcgccc cggagcgctt cgatcaggat cccgccgagc gccccacgtg gcgccgtcag
     1621 cgaatcggcc acgcccgcca ccacgtctcc gctcatggcc cgcaggaagt ggcccttcca
     1681 gtagtgacgg agtccgaacg ggatccggcc gctgacggcc tgaagctcga ggtaggtcat
     1741 cggacggatc tcatccgagg tcagcggcat gccc
//
LOCUS       DATDDI010000681         3404 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_347533, whole genome shotgun sequence.
ACCESSION   DATDDI010000681 DATDDI010000000
VERSION     DATDDI010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3404
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347533"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..324)
                     /locus_tag="VIU37_09815"
     CDS             complement(10..324)
                     /locus_tag="VIU37_09815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014295.1"
                     /translation="MKAHLLGGPRDGKVIECPGEQPPGQIRISTFAGALPDDLGDVMT
                     EIDAYSIGASFEVPETETGLAIYSIAVVRDGRTWRPDFDRCGRVPYRWTGKIVPDDRK
                     DS"
     gene            complement(321..1976)
                     /locus_tag="VIU37_09820"
     CDS             complement(321..1976)
                     /locus_tag="VIU37_09820"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6014296.1"
                     /translation="MSIRLRDYQNEAVDAVRADLADGVTRPAVVLPTGGGKTIVFSAL
                     GEAERSRGKTLIVAHRDELINQAADKYRSVNPGADVGIVKAERDDHEHAVIVSSVQTL
                     ARPNRRGRISGVGLGIIDECHHATAKSYLDVMDHFGVPFVGFTATLARGDGKALGEVW
                     QKISYEMPLLRMIRRGYLTDVKGIRIKVPDLDLKGLRKTAGDYREGELGERLAESMAP
                     VTVARAYREHGVREDGTVRPGILFAPTVATAQIFAEAMTDEGFRCEAIWGDMPMDDRR
                     RVLREFDEGKIDILSNCMVLTEGFDSPRAEVAVIARPTQSAPLYVQMVGRVLRLYPGK
                     SFALVLDVVGAATNHELCTLATLSGDRLGEIKETSSLLKALDELEAAEAEAVDEADSL
                     GYVGDVVSETVDLFAGSRQSWLQTHGGHWFIPAGGRIIALVPDRVGRLDVAWFEMPSR
                     DNNWKPRGGGYVVRGIADFGIAMAHGEGEITWEEEVMAAKDRAWRKKKRTQAQVDFAR
                     RLGMRTDQIPESMRAGQLGDLISIELASRRIDRLVERHLAGRR"
     gene            complement(2132..2365)
                     /locus_tag="VIU37_09825"
     CDS             complement(2132..2365)
                     /locus_tag="VIU37_09825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014297.1"
                     /translation="MIEQFPHCDQRVLHAPGECRYCDMRPQWQELRSAWGIAFTGHEP
                     AAGQLPCPSDHARGTGGAHVWGGNVPYPAGADG"
     gene            complement(2362..2751)
                     /locus_tag="VIU37_09830"
     CDS             complement(2362..2751)
                     /locus_tag="VIU37_09830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014298.1"
                     /translation="MTEPEPIEFSISVAAAGLAQSHSGTYSEWYALLLAGRTLGFPPE
                     AVMRIVRTSGATSPAAVANLLAVAHDGRTTEGRYLPTREFRLKVRSYPGRFKGGPDAP
                     VCESCNWPRKMHLSGDRCPPGRTKEET"
     gene            complement(2748..2936)
                     /locus_tag="VIU37_09835"
     CDS             complement(2748..2936)
                     /locus_tag="VIU37_09835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014299.1"
                     /translation="MRLTVPDARDLLAFLEGLTKLSHETGWKIGAYGPVATEHDQAGI
                     VEISQLQGGGYVIEEQSR"
     gene            complement(2933..3295)
                     /locus_tag="VIU37_09840"
     CDS             complement(2933..3295)
                     /locus_tag="VIU37_09840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014300.1"
                     /translation="MINSTSRVDLVYPTGDPAMLDGGATLAEVESAFREWLAEAKRRG
                     CPEGAKVHVGPHDSMRPGFAPHLSVYWEAPTEIEENRRSVCICPDDGCSPVSCPVCTP
                     SQCIRHGGSAERGVGRSR"
BASE COUNT          466 a         1203 c         1202 g          533 t
ORIGIN      
        1 gttgattact caagagtcct tgcggtcgtc cggcacgatc ttgcccgtcc agcggtaggg
       61 cacccggccg caccggtcga agtccggccg ccaggtgcgg ccgtcgcgga ccacggcgat
      121 cgagtagatg gccaggccgg tctcggtctc ggggacctcg aagctggcgc cgatcgagta
      181 ggcgtcgatc tcggtcatga cgtcgcccag gtcgtccggc agtgccccgg cgaaggtgga
      241 gatccggatc tgtccggggg gctgttcgcc cggacactcg atcaccttcc cgtcccgagg
      301 ccccccgagc aggtgcgcct tcacctccgg cctgccaggt gccgctccac caggcggtcg
      361 atccggcgcg aggccagctc gatcgagatc aggtcgccga gctggccggc gcgcatgctc
      421 tcggggatct ggtcggtccg catgcccagg cgccgggcga aatcgacctg tgcctgggtg
      481 cgcttcttct tgcgccatgc ccggtccttg gccgccatga cctcctcctc ccaggtgatc
      541 tcaccctcgc cgtgcgccat ggcgatcccg aagtccgcga tgccgcgcac gacgtagccg
      601 ccgccgcgcg gcttccagtt gttgtcgcgg ctgggcatct cgaaccacgc cacgtccagg
      661 cggccgacgc ggtccgggac cagggcgatg atccggccgc ccgccgggat gaaccagtgc
      721 ccgccgtggg tctggagcca gctctggcgc gagccggcga acaggtccac ggtctcgctc
      781 acgacgtcgc ccacgtagcc gagcgagtcc gcctcgtcga cagcttcggc ctcggcggcc
      841 tccagttcgt ccagggcctt caggagggag gacgtctcct tgatctcgcc cagccggtcg
      901 ccggacaggg tcgccagcgt gcacagctcg tggttggtgg cggcaccgac gacgtcgagc
      961 accagggcga aggacttgcc ggggtacagc cgcaggacgc ggccgaccat ctggacgtag
     1021 agcggggcgg actgggtcgg ccgggcgatc acggcgacct cggcccgcgg gctgtcgaag
     1081 ccctccgtga gcaccatgca gttggacagg atgtcgatct tgccctcgtc gaactcgcgc
     1141 agcacgcggc ggcggtcgtc catcggcatg tcgccccaga tggcctcgca ccggaagccc
     1201 tcgtcggtca tggcctcggc gaagatctgg gccgtcgcga cggtcggggc gaacaggatg
     1261 ccggggcgga cggtgccgtc ctcgcggacg ccgtgctcgc ggtaggcgcg cgccacggtc
     1321 accggcgcca tggactcggc caggcgctcg cccagctcgc cctcgcggta gtcgcccgcg
     1381 gtcttgcgca ggcccttcag gtccaggtcc gggaccttga tccggatccc cttgacgtcg
     1441 gtcaggtagc cacgccggat catgcgcagg agcggcatct catagctgat cttctgccag
     1501 acctcgccga gggccttgcc gtcgccgcgg gccagggtgg cggtgaagcc gacgaacggg
     1561 acgccgaagt gatccatgac gtccaggtag ctcttggccg tggcgtggtg gcactcgtcg
     1621 atgatcccca ggccgacgcc cgagatccgc ccgcgccggt tcggccgggc cagggtctgg
     1681 acggaggaga cgatcacggc gtgctcgtgg tcgtcgcgct cggccttgac gatcccgacg
     1741 tcggcaccgg ggttgacgga gcggtacttg tcggccgcct ggttgatcag ttcgtcccgg
     1801 tgggcgacga tcagggtctt gccacgcgag cgctcggcct cgccgagcgc ggagaagacg
     1861 atggtcttgc cgccgccggt cggcagcacg acggcgggac gggtgacgcc gtccgccagg
     1921 tcggcgcgga cggcgtccac ggcttcgttc tggtagtccc tcaggcggat gctcatgggg
     1981 gtagcctacc aggtagctac cagccgttca acccctcttg agtacgtgcc ggtcgtggcc
     2041 gtgcgggcac acctcggcgc cctccaggcg ccggcaccac ggacaggcca ggtccaggca
     2101 cggcccgtcc gcggcgcaca ggcagtagcc ctcacccatc ggcgccggcc gggtagggga
     2161 cgttcccgcc ccagacgtgc gcgccgccgg tccctcgggc gtggtcggac gggcacggga
     2221 gctggccggc cgcgggctcg tgcccggtga aggcgatgcc ccaggcggag cgaagctcct
     2281 gccactgcgg tctcatgtcg cagtaccggc actcgcccgg ggcgtgcagg acacgctgat
     2341 cacagtgcgg aaactgttcg atcatgtctc ctccttcgtc ctgcccgggg ggcaccggtc
     2401 gccggacagg tgcatcttcc gtggccagtt gcaactctcg cagaccggcg cgtcggggcc
     2461 gcccttgaag cgccccgggt agctcctgac cttcagtcgg aactcccggg tgggcaggta
     2521 gcggccttcg gtcgtgcggc cgtcgtgggc caccgccagc aggttggcga cggcggccgg
     2581 ggacgtcgcc ccggacgtgc ggacgatcct catgaccgcc tcgggcggga agcccagcgt
     2641 gcggccggcg agcaggagcg cgtaccactc gctgtaggtg ccggagtgcg actgggccag
     2701 gccggccgcc gccacggaga tcgagaactc gatcggctcg ggctcggtca tcggctctgt
     2761 tcctcgatca cgtagccgcc gccctggagc tgactgatct cgacgatgcc ggcctggtcg
     2821 tgctcggtcg ccacgggacc gtaggccccg atcttccagc cggtctcgtg ggagagcttg
     2881 gtcaggccct ccaggaaggc cagcaggtcc cgggcatcgg gcacggtcaa cctcaccgac
     2941 tcctcccaac tccgcgctcg gccgagccgc cgtgccggat gcactgcgac ggcgtgcaca
     3001 ccgggcagga cacgggcgaa caaccgtcgt ccgggcagat gcacacggac ctgcggttct
     3061 cctcgatctc cgtcggagcc tcccagtaca cggacaggtg aggtgcgaag cccggacgca
     3121 tggagtcgtg cgggccgacg tggaccttgg cgccctccgg gcagccgcgc cgcttggcct
     3181 cggccagcca ctccctgaag gccgactcca cttcggcgag ggtcgccccg ccatccagca
     3241 tggccggatc gccggtcggg tagaccaggt cgacacggct cgttgaattg atcatgatct
     3301 gtattcctcc acggctagat caggattccg tctcggtgcg cgttgccgcg ctcgcggttg
     3361 cagggcccgc acgcgggcac gatgttgcca cggacgtagc gccc
//
LOCUS       DATDDI010000682         4605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_472215, whole genome shotgun sequence.
ACCESSION   DATDDI010000682 DATDDI010000000
VERSION     DATDDI010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472215"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VIU37_09845"
     CDS             complement(<1..436)
                     /locus_tag="VIU37_09845"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEY6014301.1"
                     /translation="MTFRLLPKDVKFFDLFIQDGDNLAYAAGRLHEMVDRFDRLDDRV
                     AEIQALEHHGDEIDREINRRLEDAFITPFDREDIHELTVRLDDVLDGIQAIAETLVIY
                     DVSVPTVESKRLAAIIAEQSVELVAILRGLDGLKDLDHHLQAV"
     gene            complement(471..1472)
                     /locus_tag="VIU37_09850"
     CDS             complement(471..1472)
                     /locus_tag="VIU37_09850"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEY6014302.1"
                     /translation="MQGLTLLLVAVVVLAVFFDYINGFHDTANAIATSVATRALHPRH
                     AIAMAAAFNFIGAFAGTAVAKTIGSGLVQETTTTQTVVIAALLGAIAWNLLTWLLGLP
                     SSSSHALIGGLLGATLVASGAGAFKVEGIVGKVLVPMIVSPVLGFIGAFALMLAIYWI
                     FRRVHRRPLGRAFKRIQVVSAGFMAFSHGSNDAQKTMGIITLALFTAGVIPDVTVPIW
                     VIALSATAISLGTAIGGWRIMRTMGRRVVDLEPVHGFAAETTSATILFTTAHFGIPVS
                     TTHVISAAIMGVGTSRGARGVRWGVARDILVAWVLTLPAAGLVAAMTWVVLNFVGLR"
     gene            1566..3263
                     /locus_tag="VIU37_09855"
     CDS             1566..3263
                     /locus_tag="VIU37_09855"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEY6014303.1"
                     /translation="MRLSNLFFTTLRDDPAEAEMPSHRLLLRAGYVRQLGSGIYSLLP
                     LGFRVNKRVEQIIREEMDRIGCQEMEMPVVHPADVWRASGRYDAIGPELGRFKDRNGR
                     DMVLAMTHEEVVGLLLADIVRSYRQLPMMVYHFQTKWRDEPRARGGLIRVREFVMKDA
                     YSIDRDEAGLDASYWAQHGAYVRIFERLGLDTIAVSSDVGMMGGTQAHEFMVLNPAGE
                     DVLVLCEACGYAANRQIAIVPKPDPAPESALPLEEVATPGTTTIASLAAFLGVGADRT
                     AKAAFFMTGDGRLVTAIVRGDYDVNETKLVNAIEATGGMRPATIEEIKAAGMEPGYGS
                     PIGAHDTLVVVDDLVARSANLVAGANREGFHYRNVNHGRDFTADIVTDLTNAQAGDRC
                     PNCGEPLVLRNGIEVGNIFKLGTKYTDAAGATYLGEDGVAHKIVMGSYGIGVGRNVAC
                     IVEAHHDDKGIVWPAEVAPYAAHLVSIGSARDPKVDETAERIHAFSIASGREILWDDR
                     DESPGVKFTDAELLGMPWILTVSPRSLAAGGVEVTERATGERSTRSIEDVEALLAAG"
     gene            3276..4343
                     /locus_tag="VIU37_09860"
     CDS             3276..4343
                     /locus_tag="VIU37_09860"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY6014304.1"
                     /translation="MAPRPAVPADDLYAQLDLPVDASPEAVEVAWRGLLRLHHPDVAG
                     PAGLERAKRINVAHDWLSDPGLRARYDRERGLTARRGRAGGRGYAPDAGARAEAAREH
                     RHVRHHADDPSETIARFLDRLSSLTADELDRLAAADPAPIAFGATIRRFLPEDQRLVL
                     EQVDAEIGRRLPADVLGRAGTRGVIEAYATELVIGSFLDDLLSEPFRERTRERLTRGW
                     DAAVGQPRYGPNGPAVQALIRRLRMLDASGVARLAATGTRDRLGEEPWPPGVSVEDDE
                     ALRVSSVLAGRDAAAAVEEPTLDPAVVRRARRAAARAAHLLVLRHAFAPATFAALTAA
                     WRPGLLHDDRPATRVRRPAAG"
     gene            4383..>4605
                     /locus_tag="VIU37_09865"
     CDS             4383..>4605
                     /locus_tag="VIU37_09865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014305.1"
                     /translation="MEPWLVAIVASVAFAGALLGLRRNRRTVARMLAAAGAAATADPP
                     GAVVALRDEADRTAEELAAERHAHDLLLEW"
BASE COUNT          690 a         1637 c         1641 g          637 t
ORIGIN      
        1 ggacggcctg caggtgatgg tcgaggtcct tgagtccgtc gagaccgcgc aggatcgcga
       61 ccagctcgac ggactgttcg gcgatgatcg ccgccagccg cttcgattcg acagtcggca
      121 ccgagacgtc gtagatcacg agcgtctcgg cgatcgcctg gatcccatcg aggacgtcgt
      181 cgagcctgac ggtgagctcg tggatgtcct cgcggtcgaa cggggtgatg aaggcgtcct
      241 cgagccgccg gttgatctcg cggtcgatct cgtcgccgtg atgctcgagc gcctggatct
      301 cggcgacgcg gtcgtccagg cggtcgaagc ggtcgaccat ctcgtggagc cggccggccg
      361 cgtacgccag gttgtcgccg tcctggatga acaggtcgaa gaacttcacg tccttgggga
      421 gcaggcggaa cgtcatcgag gtgcctccgg gcgagcttga cgggacgggc tcatcggagc
      481 cccacgaagt tgaggacgac ccaggtcatg gcggcgacca gtccggccgc cggcagcgtg
      541 aggacccagg cgaccaggat gtcgcgggcg acgccccagc ggacgccgcg tgccccacgg
      601 ctcgtgccga cgcccatgat cgcggcggag atcacgtggg tggtcgagac cgggatgccg
      661 aaatgggcgg tcgtgaacag gatcgtggcc gaggtcgtct cggcagcgaa cccatggacc
      721 ggctcgaggt cgacgacccg gcgtcccatc gtccgcatga tgcgccagcc accgatcgcc
      781 gtcccgagcg agatcgccgt cgccgacagg gcgatgaccc agatcgggac ggtcacgtcc
      841 gggatgacgc cggcggtgaa cagcgccagg gtgatgatgc ccatcgtctt ctgggcgtcg
      901 ttcgagccgt gcgagaaggc catgaacccg gccgacacga cctggatccg cttgaacgcc
      961 cggccgagcg gacgccggtg cacccggcgg aagatccagt agatcgcgag catcagcgcg
     1021 aacgcgccga tgaacccgag gaccggggag acgatcatcg gcacgagcac cttgcccacg
     1081 atcccctcga ccttgaaggc gcccgccccg gaggccacga gggtcgcccc gaggagtccg
     1141 ccgatgaggg catggctgct cgagctcggc agtccgagca gccaggtcag gaggttccag
     1201 gcgatcgcgc cgagcagcgc ggcgatgacg acggtctggg tggtcgtcgt ctcctggacc
     1261 agccccgagc cgatcgtctt ggccacggcc gttcccgcga acgccccgat gaagttgaag
     1321 gcggccgcca tcgcgatcgc gtggcgcgga tggagcgccc gggtcgcgac ggacgtcgcg
     1381 atggcattcg cggtgtcgtg gaatccgttg atgtagtcga agaagacggc gaggacgacg
     1441 accgccacca acaacagggt cagcccttgc atgcgaacgg aatggtagcg gcgcggccgt
     1501 tctctgattc cccgacgacg cggcgatccg ccgccctgcc gctcgggcgc ggctatcctt
     1561 cgcggatgcg actctcgaat ctcttcttca ccacgctccg cgacgacccc gccgaggcgg
     1621 agatgccgtc acaccggctg ctgctgcggg ccggctacgt ccgccagctg gggtcgggga
     1681 tctactcgct cctgccgctc ggcttccggg tcaacaagcg ggtcgagcag atcatccgcg
     1741 aggagatgga ccggatcggc tgccaggaga tggagatgcc ggtcgtccat cccgccgacg
     1801 tgtggcgcgc cagcggccgt tacgacgcga tcggtccgga gctcggccgg ttcaaggacc
     1861 ggaacgggcg cgacatggtc ctggcgatga cccacgagga ggtcgtcggc ctgctcctgg
     1921 ccgacatcgt ccgctcgtat cgccagctgc cgatgatggt ctatcacttc cagaccaagt
     1981 ggcgcgacga gccacgagcg cgcggcggcc tgatccgcgt ccgcgagttc gtgatgaagg
     2041 acgcctacag catcgaccgc gacgaggccg ggctcgacgc cagctactgg gcgcagcacg
     2101 gcgcctacgt ccggatcttc gagcggctcg ggctcgacac gatcgccgtg tcgtccgacg
     2161 tcgggatgat gggcggcacg caggcccacg agttcatggt cctcaacccc gccggcgagg
     2221 acgtcctcgt gctgtgcgag gcgtgcggct atgccgccaa ccggcagatc gcgatcgtcc
     2281 ccaagccgga tcctgcgccc gagtcggccc tccccctgga ggaggtcgcc acgccgggca
     2341 cgaccacgat cgcgtccctc gccgcgttcc tcggcgtggg cgcggatcga acggccaagg
     2401 ccgccttctt catgaccggc gacggccggc tggtgacggc catcgtccgc ggcgactacg
     2461 acgtcaacga gaccaagctg gtcaacgcga tcgaggcgac cggcgggatg cgccctgcca
     2521 cgatcgagga gatcaaggcc gccgggatgg agccgggcta cggctcgccg atcggcgccc
     2581 acgacacgct ggtggtcgtg gacgacctcg tcgcgcgctc ggccaacctg gtcgccgggg
     2641 caaaccgcga gggcttccac taccgcaacg tcaaccacgg ccgcgacttc accgccgaca
     2701 tcgtcacgga cctgaccaac gcccaggcgg gcgaccgctg ccccaactgc ggggaaccac
     2761 tcgtcctccg caacgggatc gaggtcggca acatcttcaa gctcgggacc aagtacaccg
     2821 acgcggccgg tgccacctac ctcggcgagg atggcgtggc ccacaagatc gtgatgggct
     2881 cgtacgggat cggcgtcggc cggaacgtcg cctgcatcgt cgaggcgcac cacgacgaca
     2941 aggggatcgt ctggccggcc gaggtggcgc cgtatgccgc ccacctcgtg tcgatcggct
     3001 cggcgcgcga cccgaaggtc gacgagaccg ccgagcggat ccacgcgttc tcgatcgcgt
     3061 ccggccgcga gatcctgtgg gacgaccgcg acgaatcgcc gggcgtcaag ttcaccgacg
     3121 ccgagctgct cggcatgccc tggatcctga ccgtcagtcc gcgttcgctg gccgcgggcg
     3181 gggtcgaggt caccgaacgg gcgaccggcg aacgctcgac gcgctcgatc gaggacgtcg
     3241 aggcgctgct cgcggccggc tgaggccggg cgaccgtggc tccgcgaccc gcggttccgg
     3301 ccgacgacct gtacgcccag ctcgatctgc ccgtcgacgc cagccccgag gccgtcgagg
     3361 tcgcctggcg cgggctgctc cggctccacc atccggacgt ggccgggcct gccgggctcg
     3421 aacgggcgaa acggatcaat gtcgcgcatg actggctgag cgatcccggg ctccgcgccc
     3481 ggtacgaccg cgagcgcgga ctgaccgcgc ggcggggccg ggccggcgga cgcggttacg
     3541 cgccggacgc aggggctcgg gcggaagcgg cccgcgagca tcgccacgtc cggcatcacg
     3601 cggacgatcc ttccgagacg atcgcccggt tcctcgatcg gctgtcgtcg ctcacggccg
     3661 acgagctcga ccgcctcgcc gcggcggacc ccgcgcccat cgccttcggg gccacgatcc
     3721 ggcggttcct ccccgaggac cagcggctcg tgctggaaca ggtggacgcc gagatcgggc
     3781 ggcgactgcc ggccgacgtc ctcggacgag ccggcacgcg cggcgtgatc gaggcctacg
     3841 cgacggagct ggtcatcggc tcgttcctcg acgacctgct cagcgagcca ttccgcgaac
     3901 gaacgcgcga gcggctcacc cgtggctggg acgccgccgt cggccagcct cgctacggcc
     3961 cgaacggacc tgccgtccag gccctgatcc gccgcttgcg gatgctcgac gcttcggggg
     4021 tcgcccgcct ggccgccacc ggcacgcgcg accgtctggg cgaggagccc tggccgcccg
     4081 gcgtgtcggt cgaggacgac gaggccctgc gggtgtcgtc tgtcctggcc gggcgggacg
     4141 ccgccgccgc cgtcgaggag ccgacgctcg accctgcggt cgtccgacgg gctcgtcgag
     4201 ccgcggcccg tgcggcgcac ctgctcgtgc tccgtcacgc gttcgcgccg gccacgttcg
     4261 ccgccttgac ggctgcctgg cgcccgggtc ttctccacga cgatcgaccc gcaacccggg
     4321 tccggcggcc cgccgcgggc tgaccccgta cgacgcgacg cgggctgtgc gatgctcgcg
     4381 ccgtggagcc gtggctggtc gcgatcgtgg cgtcggtggc gttcgcaggg gcgctcctcg
     4441 ggctgcggag gaaccgccga acggtcgccc ggatgctggc cgccgcgggt gccgcggcca
     4501 cggccgaccc gcccggtgcc gtcgtggccc tgcgcgacga agccgaccgc accgcggagg
     4561 agctggccgc cgaacggcac gcccacgacc tcctgctcga atggc
//
LOCUS       DATDDI010000683         3033 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_97717, whole genome shotgun sequence.
ACCESSION   DATDDI010000683 DATDDI010000000
VERSION     DATDDI010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3033
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97717"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VIU37_09870"
     CDS             complement(<1..394)
                     /locus_tag="VIU37_09870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014306.1"
                     /translation="MTDPAVAARARVDDLIERLERVNLQLVVIAPPDATRRAAQARAR
                     AAAVASGRGDLFEEATAAVRETVIRAFSRGGFSGTWAANDWSISVASPSDRVAAATAF
                     EEAVMAEVVEDLVDAGTLETLRASTDELV"
     gene            complement(411..1733)
                     /locus_tag="VIU37_09875"
     CDS             complement(411..1733)
                     /locus_tag="VIU37_09875"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEY6014307.1"
                     /translation="MVESESRSAATQRLPDHSVVPAVWSRITNLEVDRGEGSWLITRD
                     GQRYLDYSSGIGVTNTGHAHPRVAAAVAAQAAKLLHGQQNIVYHEPGLRLYDRLRTVL
                     PGGPWQAFLSNSGAEAVEASIKLARVATGRPAVIAFRYGYHGRTAQTMALTTAKDVYR
                     GAFEPLPGSVYHTAYPYCYRAAGGAHSPDACSCDWEAQLDLTFHQFIYPDRVAAILIE
                     PVLGEGGYIVPPPDFLPRLREITRQHGILLIADEVQTGFGRTGEFFAVQHWNVEPDIL
                     VMAKGIASGLPLSGILAREDLMAHWKPGTHGGTYGGNVVSCAAANATLDVIEAEGLVA
                     NARERGLQFLSGLRALQARYPSVGDARGLGLMLALELVKPGVGDGRVPDPELTKRIQA
                     EALARHLIVLTAGTYVNVIRIIPPLVTTGDEVVLALSILDESLAAAGA"
     gene            complement(1751..2650)
                     /locus_tag="VIU37_09880"
     CDS             complement(1751..2650)
                     /locus_tag="VIU37_09880"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014308.1"
                     /translation="MTTETTTVPAVPASAPRARTAPRGSLGQRLGPRVLPAFTALAIL
                     YLMIPIIVMIVFSFNRPEGKFNYVWNEFSLSGWLHPFDWPGLGDAVRTSLLVAVLSTI
                     AATVMGTMLGLALTRYHFRGRGALNGIIFLPMATPEIVLGASMLTLFVATALPPLSGS
                     VPTLYPTGFATILIAHIMFNISYVVVTVKARLAGFDRRLEEAAMDLGANELTTFWKVT
                     FPLILPGVMAAALLAFSLSIDDFVITNFVSGTTNTFPIWIYSIQRNALPVQINVIGSI
                     IFLGAVALVGLTSLRSGRAARIR"
     gene            complement(2650..>3033)
                     /locus_tag="VIU37_09885"
     CDS             complement(2650..>3033)
                     /locus_tag="VIU37_09885"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6014309.1"
                     /translation="GMLFVSAPIVVSAAREAFRTVDPKLERVARTLGDTGWGAFRRVT
                     LPLALPGVFAGSLLTFIPAMGDYINAELLGSPGTRMIGNVIQNRLLVQNDYPVGSALS
                     FVLMAGILVAVAIYARLLGTEQLTG"
BASE COUNT          468 a         1050 c         1105 g          410 t
ORIGIN      
        1 ggacgagctc gtcggtgctg gcccgcagcg tctcgagcgt gccggcgtcc acgagatcct
       61 cgacgacctc ggccatcacc gcttcctcga aggcggtcgc cgccgcgacg cgatcgctcg
      121 gcgaggcgac cgagatcgac cagtcgttcg cggcccacgt gccgctgaag ccgccccgtg
      181 agaaggcgcg gatcaccgtc tcgcgcaccg cggccgtcgc ctcctcgaac aggtcgccgc
      241 ggccggaggc gaccgcggcg gctcgggcac gcgcctgcgc ggcgcggcgg gtggcgtccg
      301 gcggcgcgat gaccacgagc tggaggttga cccgctcgag acgctcgatg agatcgtcca
      361 cccgggcgcg cgcggcgacc gccggatcgg tcatgccccc caccggcagg tcaggccccg
      421 gccgcggcca ggctctcgtc caggatcgac agggccagca ccacctcgtc gccggtcgtg
      481 acgagcggcg ggatgatccg gatcacgttg acgtaggtgc ccgccgtcag gacgatcagg
      541 tggcgtgcca gggcctcggc ctggatccgc ttggtgagct ccggatcggg cacgcgcccg
      601 tcgccgacac ccggcttgac gagctccagc gcgagcatca ggccgagccc gcgcgcatcg
      661 ccgaccgacg gatagcgggc ctgcagcgcc cgcagccccg acaggaactg gagcccgcgc
      721 tcgcgcgcgt tggcgacgag gccttccgct tcgatcacgt cgagggtcgc gttcgccgcc
      781 gcgcacgaga cgacgttgcc gccgtacgtc ccgccgtggg tgccgggctt ccagtgcgcc
      841 atgagatcct cgcgggcgag gatcccggac agcggcagcc ccgaggcgat ccccttggcc
      901 atcacgagga tgtcgggctc cacgttccag tgctgcacgg cgaagaattc gccggtccgg
      961 ccgaagcccg tctggacctc gtcggcgatg agcaggatcc cgtgctggcg ggtgatctcg
     1021 cgaagccgcg ggaggaagtc gggcgggggg acgatgtaac cgccctcgcc caggaccggc
     1081 tcgatgagga tcgcggcgac ccggtccggg tagatgaact ggtggaaggt gaggtcgagc
     1141 tgggcctccc agtcgcagct gcaggcgtcg ggcgaatgcg cgccgcccgc cgctcggtag
     1201 cagtacgggt acgccgtgtg gtagacggac cccggcagcg gctcgaacgc gccgcggtag
     1261 acgtccttgg ccgtcgtcag cgccatggtc tgggccgtcc ggccgtggta gccgtagcgg
     1321 aaggcgatga ccgccggacg tcccgtcgcg acccgggcca gcttgatcga ggcctcgacc
     1381 gcctcggcgc ccgagttgga caggaacgcc tgccacggcc cgccgggcag caccgtccgc
     1441 aaccggtcgt acagccggag gccgggttcg tggtagacga tgttctgttg cccgtggagc
     1501 agcttcgcgg cctgcgcggc gaccgccgcc gcgacgcgcg ggtgcgcgtg gccggtgttg
     1561 gtgaccccga tcccggacga gtagtcgagg taccgctggc cgtcccgggt gatcagccac
     1621 gagccctccc cgcgatcgac ctcgaggttg gtgatgcggc tccagacggc cggcacgacc
     1681 gagtggtcgg ggagcctctg ggtggccgcg ctgcggctct cggactcgac catgtcggcc
     1741 tctccagcga tcagcggatg cgggcggcgc ggcccgaccg gagcgaggtg agcccgacga
     1801 gcgccaccgc gccgaggaag atgatcgacc cgatgacgtt gatctgcacg ggcagcgcgt
     1861 tgcgctggat cgagtagatc cagatgggga aggtgttggt cgtcccggac acgaagttgg
     1921 tgatcacgaa gtcgtcgatc gacaggctga acgccagcag cgcggccgcc atcacgcccg
     1981 ggaggatgag cgggaaggtc accttccaga acgtcgtcag ctcgttggcg ccgaggtcca
     2041 tggccgcctc ctcgagccgc cggtcgaagc cggccaggcg cgccttcacg gtcacgacca
     2101 cgtagctgat gttgaacatg atgtgggcga tcaggatcgt ggcgaacccg gtcgggtaga
     2161 gcgtcggcac gctgccggac agcggcggca gggcggttgc cacgaacagc gtcagcatgc
     2221 tcgcgccgag cacgatctcg ggtgtcgcca tcggcaggaa gatgatcccg ttgagcgcgc
     2281 cgcggccgcg gaagtggtaa cgggtcagcg ccaggccgag catcgtgccc atgaccgtgg
     2341 cggcgatcgt cgacaggacc gcgaccagga ggctcgtccg gaccgcgtcc cccagccccg
     2401 gccagtcgaa cgggtgaagc cagccgctca gcgagaactc gttccagacg tagttgaact
     2461 tgccctcggg gcggttgaac gagaacacga tcatgacgat gatcgggatc atcaggtaca
     2521 ggatcgcgag tgccgtgaag gcgggcagca cgcgcggccc cagccgctgg ccgagcgaac
     2581 cgcgcggcgc ggtcctcgcc cgcggggccg atgccgggac cgccgggacg gtcgtcgtct
     2641 ccgtcgtcat cagccggtca gctgctcggt gccgagcagc cgggcataga tcgccaccgc
     2701 caccaggatc ccggccatca ggacgaacga cagcgccgac ccgaccgggt agtcgttctg
     2761 gaccagcagc cggttctgga tcacgttgcc gatcatgcgg gtccccggac tgcccagcag
     2821 ctcggcgttg atgtagtcgc ccatggccgg gatgaacgtg agcagcgagc cggcgaacac
     2881 gccgggcagc gcgagcggca gcgtcacccg gcggaaggcg ccccagccgg tgtcgcccag
     2941 cgtccgcgcc actcgctcca gcttgggatc caccgtgcgg aaggcttccc gcgccgcgct
     3001 caccacgatg ggcgcggaca cgaacagcat gcc
//
LOCUS       DATDDI010000684         2278 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_617779, whole genome shotgun sequence.
ACCESSION   DATDDI010000684 DATDDI010000000
VERSION     DATDDI010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617779"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1161
                     /locus_tag="VIU37_09890"
     CDS             <1..1161
                     /locus_tag="VIU37_09890"
                     /inference="COORDINATES: protein motif:HMM:NF014801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEY6014310.1"
                     /translation="RPAITFLDARASAEADELAAATGVRGWALGGLPAALWVERHQPE
                     VAAATRWYLTTWEWLAYRLTGEAAAPLIPDQLVPDPARVNAAGIPADRLPRVARTGEV
                     VGTVTETAAAALGVRPGRPVVGGTVDAFASYLGAGLLEPGDAYDPGGSAGGFGVYWDR
                     PVEVRGAFVTPAPLAGLFSVGAAMAATGRALDWYRDQVLVDTIAVDALLAEAAQTPAG
                     ADGLVFLPYLAGERSPIWDPEARGVLAGLTLGHGRAHISRAIIEASALAIRHVAEPML
                     AAGVRVNEMRVCGGPARSRFWNGVKADVTGFPVAVPAVLETAVLGAAILGSVGIGAHP
                     DLPAAIRAMTRIESRIEPTPALAPVYDRLFEAYRALYPATAPVLRPLQELSA"
     gene            1158..2003
                     /locus_tag="VIU37_09895"
     CDS             1158..2003
                     /locus_tag="VIU37_09895"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014311.1"
                     /translation="MSLNGHGPGAVRLRDLGFAFAVRGGGSLPVLDGVDLAIPGGGIV
                     ALVGPNGCGKSTLLRVVAGLLEPARGEALLDGTPIHGPDPRIGLVFQEPRLLPWRSAA
                     DNITYPLELAGWPAARRRERLATLSDLVDLDPAVTTSRPAELSGGTRQRVALARALAL
                     EPEVLLLDEPFSALDALSRERFDLELLRLWHRAATTIVIVTHSIPEAVLIADRVVVLS
                     ARPARIVADIAVDLPRPRTIEALDAPAAARASHRIRAFLEDDDARDAAAVRDAPIPVA
                     TELAS"
     gene            2000..>2278
                     /locus_tag="VIU37_09900"
     CDS             2000..>2278
                     /locus_tag="VIU37_09900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014312.1"
                     /translation="MTRGTAVPALLAFVVFVLVWKAVVIVGGLPPFILPAPETVAIRL
                     ADAWRDGIIEPHLATTLVEVGLGFAVGAALALVAGYGLARSVWIDRLLS"
BASE COUNT          236 a          872 c          852 g          318 t
ORIGIN      
        1 cggccggcga tcaccttcct cgatgcccgg gcaagcgccg aggcggacga gctggccgcc
       61 gcgaccggtg tccgcggctg ggcgctcggc gggctgcccg ctgcgctctg ggtcgaacgc
      121 caccagccgg aggtcgccgc cgcgacccgc tggtacctca cgacctggga gtggctggcg
      181 tatcgcctga ccggtgaggc ggccgcgccc ctgatcccgg accagctggt gccggatccg
      241 gcccgcgtca acgccgccgg gatcccggcc gaccgcctgc cacgggtcgc ccggaccggc
      301 gaggtggtcg gcaccgtgac cgagaccgcc gccgcggcgc tcggcgtgcg ccccgggcgg
      361 ccggtcgtcg gcggcacggt cgatgcgttc gcgagctatc tcggggccgg gctgctcgag
      421 cccggcgacg cctacgaccc gggcgggtcc gccggcggct tcggggtcta ctgggatcga
      481 ccggtcgagg tccgcggcgc gttcgtgaca ccggcgccgc tggccgggct gttcagcgtc
      541 ggagccgcga tggcggccac cgggcgggcg ctcgactggt atcgcgacca ggtcctggtc
      601 gacacgatcg cggtcgacgc gctcctcgcc gaggcggcgc agacgcccgc cggggcggac
      661 gggctcgtct tcctgccgta cctcgcgggc gagcgctcgc cgatctggga cccggaggcg
      721 cgcggcgtgc tcgccggcct gaccctcggg cacgggcggg cccacatcag ccgggcgatc
      781 atcgaggcgt cggcgctggc gatccgccac gtggccgagc ccatgctcgc ggcgggggtc
      841 cgggtcaacg agatgcgcgt ctgtgggggg ccggcccgca gccggttctg gaacggcgtg
      901 aaggcggacg tgaccggctt cccggtcgcg gtaccggccg tcctcgagac cgcggtcctc
      961 ggggcggcca tcctgggttc ggtcgggatc ggcgcgcacc cggacctgcc ggcggcgatc
     1021 cgggcgatga cgcggatcga atcgcggatc gagccgacgc cggcgctggc cccggtgtac
     1081 gaccgcctgt tcgaggcgta ccgggcgctc tatcccgcca cggcaccggt cctgcggccg
     1141 ctccaggagc tgtcggcatg agcctcaacg gccacggccc gggcgcggtg cggctccgcg
     1201 acctgggctt cgcgttcgcg gtccgcggcg gcggctcgct gcccgtgctc gacggcgtgg
     1261 acctggcgat ccccggtggc gggatcgtcg cgctcgtcgg cccgaacggc tgcggcaagt
     1321 cgacgctgct gcgcgtcgtc gccggcctgc tcgagccggc ccgcggcgag gcgctgctcg
     1381 acggtacgcc gatccacggc cccgatcccc ggatcgggct ggtcttccag gagccgaggc
     1441 tgctgccatg gcggtcggcg gcggacaaca tcacctatcc cctggagctt gccggctggc
     1501 cggcggcccg ccgccgcgag cggctggcga cgctgagcga cctggtcgac ctcgatcccg
     1561 ccgtcacgac ctcgcggccg gccgagctgt ccggcggcac ccgccagcgc gtggcgctcg
     1621 cgcgcgcgct cgcgctcgag cccgaggtcc tgctcctcga cgagccgttc agcgcgctcg
     1681 acgcgctcag ccgcgagcgg ttcgacctcg agctgctccg gctctggcac cgcgccgcca
     1741 cgacgatcgt gatcgtcacc cacagcatcc ccgaggcggt cctgatcgcc gatcgggtgg
     1801 tggtgctctc ggcgcgtccg gcccggatcg tggccgacat cgccgtcgac ctccctcgac
     1861 cacggacgat cgaggcactc gacgcccctg cggccgcccg ggcctcgcac cggatccgcg
     1921 cgttcctcga ggacgatgac gcccgcgacg cggccgccgt ccgtgacgcg ccgatcccgg
     1981 tcgcgacgga gctcgcgtca tgacccgcgg gacggccgtg cccgcgcttc tcgccttcgt
     2041 tgtcttcgtg ctggtctgga aggccgtggt gatcgtgggc gggctgccgc cgttcatcct
     2101 ccccgcaccc gagacggtcg ccatccggct cgccgacgcc tggcgtgacg gcatcatcga
     2161 gccgcacctg gccacgacgc tggtggaagt cgggctcggc ttcgccgtcg gcgccgccct
     2221 ggccctggtc gccgggtatg ggctcgcacg cagcgtctgg atcgaccgac tgctctcg
//
LOCUS       DATDDI010000685         1804 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_97736, whole genome shotgun sequence.
ACCESSION   DATDDI010000685 DATDDI010000000
VERSION     DATDDI010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97736"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1489)
                     /gene="accD"
                     /locus_tag="VIU37_09905"
     CDS             complement(<1..1489)
                     /gene="accD"
                     /locus_tag="VIU37_09905"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HEY6014313.1"
                     /translation="MPLKLPSFRARRNAYPPDLWTKCPTCEEMLFNKQLDKALRVCPN
                     CGHHFRLSATARLDQLLDPGSWVERDAGLLSVDRLGFVDSKSYVDRLAAAQLSTGMRD
                     AALWGTATIGGIPVAICVMDFGFMGGSMGAVVGEKVTRAAEYALTASTPLIVVSASGG
                     ARMQEGTFALMQLAKTLAAVERLRGAGIPFLSVLSDPTTGGVFASFAAVGDVNLAEPN
                     ALIGFAGSRVSAGTIAQELPVGFQRSEFLFTHGFIDRIVARPALRDELVRLLRLLPVR
                     RAGEVDGTGPAPDLAGFRPFSFLTSLAERVGEIGVFDADHGPAPRATAEATDPRDAVW
                     ARVQLARNLHRPRTLEFVAAMTDDFVELHGDRLFGDDAAVVTGIARLDGRRVVIVGQQ
                     KGADTDENIRRNFGMPHPEGYRKAMRVMELAERFGLPVITFVDVPGAHPGAESEERGI
                     AEAIARSIALMTRLRTPIVTVITGEGGSGGALAIAVGDVVIALENA"
     gene            complement(1489..>1804)
                     /locus_tag="VIU37_09910"
     CDS             complement(1489..>1804)
                     /locus_tag="VIU37_09910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014314.1"
                     /translation="DLPRFHPSFRFEEALADRLAAAAERMRAAADDLPTLTILPDGAI
                     RVGPPTDLRAAMGRPLWLGGALTSAALSLAGAAYLAWRFRRPPNGAMARAVRAVARAR
                     LS"
BASE COUNT          270 a          652 c          661 g          221 t
ORIGIN      
        1 cggcgttctc gagggcgatc acgacgtcgc cgacggcgat cgccagcgcc ccacccgagc
       61 cgccctcgcc ggtgatcacg gtcacgatcg gtgtccgcag ccgggtcatg agggcgatcg
      121 agcgggcgat cgcctcggca atcccgcgtt cctcggactc ggcacccgga tgcgcgcccg
      181 ggacgtcgac gaaggtgatg accggcagcc cgaaccgctc cgcgagctcc atcacccgca
      241 tcgccttgcg atagccctcg ggatgtggca tcccgaagtt gcgacggatg ttctcgtcgg
      301 tgtcggcgcc cttctgctgg ccgacgatga cgacccgccg gccgtccaac cgtgcgatcc
      361 cggtcacgac cgcggcgtcg tcgccgaaca gccggtcacc gtggagctcg acgaagtcgt
      421 cggtcatggc cgcgacgaac tcgagcgtgc gtggccggtg caggttgcgt gccagctgca
      481 cgcgggccca cacggcatcg cgggggtcgg ttgcctccgc ggtcgcgcgt ggggcagggc
      541 cgtgatccgc gtcgaacacg ccgatctcgc cgacgcgctc ggcgagcgag gtcaggaacg
      601 agaacggccg gaagccggcc aggtcgggcg cggggccggt gccgtcgacc tcgccggccc
      661 ggcggaccgg gagcaggcgg agcagccgga ccagctcgtc acgcagcgcc ggacgggcca
      721 cgatccgatc gatgaagccg tgcgtgaaca ggaactcgga gcgctggaac ccgaccggca
      781 gctcctgggc gatcgtcccg gccgacacgc gcgagccggc gaacccgatg agcgcgttcg
      841 gttcggcgag gttgacgtcg ccgaccgcgg cgaacgaggc gaacacgccg cccgtggtcg
      901 gatcggacag gacgctcagg aacgggatcc cggcgccgcg caggcgctcc accgccgcca
      961 gcgtcttggc cagctgcatc agcgcaaacg tgccttcctg catccgggcc ccgccggatg
     1021 cgctgacgac gatcagcggc gtgctcgccg tcagggcgta ctccgcggcc cgcgtgacct
     1081 tctccccgac cacggcgccc atcgacccgc ccatgaaccc gaagtccatg acgcagatcg
     1141 ccaccgggat accgccgatc gtcgcggtgc cccacagggc ggcgtcgcgc atcccggtcg
     1201 acagctgcgc ggcggccagc cggtcgacgt aggacttgct gtcgacgaac ccgagccggt
     1261 cgaccgacag gaggccggcg tcgcgctcga cccacgatcc cggatcgagc agctggtcga
     1321 ggcgggcggt cgcggagaga cggaagtggt ggccgcagtt ggggcagacc cggagcgcct
     1381 tgtcgagctg cttgttgaac agcatctcct cgcaggtcgg gcacttggtc cacaggtcgg
     1441 gcgggtaggc gtttcgccgg gcacggaagg acggcagctt gagcggcatc aggacagcct
     1501 cgctctcgcc acggcccgga cggcccgggc catcgccccg ttcggcggac gccggaaccg
     1561 ccaggccagg taggccgcac cggccagcga cagggcggcc gaggtgagcg ctccgccgag
     1621 ccacagcggc cggcccatcg ccgcgcggag gtccgtcggc ggcccgaccc ggatcgctcc
     1681 gtcgggaagg atcgtcaggg tgggcaggtc gtccgcggcg gcccgcatcc gctcggcggc
     1741 cgcggccagg cgatcggcga gcgcctcctc gaaccggaac gacgggtgga accgcggcag
     1801 gtcg
//
LOCUS       DATDDI010000686         3070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_701353, whole genome shotgun sequence.
ACCESSION   DATDDI010000686 DATDDI010000000
VERSION     DATDDI010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701353"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VIU37_09915"
     CDS             complement(<1..195)
                     /locus_tag="VIU37_09915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014315.1"
                     /translation="MTDTKPPVETEKRIVQPVDPARRTEIDKQRVPMSARPYRLLALV
                     KQDAVVRVQKEPDDTVMTWPH"
     gene            complement(192..920)
                     /gene="extP"
                     /locus_tag="VIU37_09920"
     CDS             complement(192..920)
                     /gene="extP"
                     /locus_tag="VIU37_09920"
                     /inference="COORDINATES: protein motif:HMM:NF040969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenite/tellurite reduction operon b-type
                     cytochrome ExtP"
                     /protein_id="HEY6014316.1"
                     /translation="MSFLERVDQSIRRSAMWRSLFRQPYPRDERSRAYAVMNNVFLHI
                     HPVRVRQHAVKFAYTFCLGGLSFFLFLVLTVTGVYLMFFYVPSATQAYTNILEIQSQV
                     TFGLLTRNIHRWAAHLMVFFVFLHMMRVFYHGAYKPPREFNWVVGVVLLFLTIMLSFT
                     GYLLPWDQIAYWAITIGTNMGGYAPLFNTPTKLILLGGLEVAQNTLLRFYVGHVIFLP
                     LIAAIFLAVHFWRIRKDGGISGPL"
     gene            complement(917..2752)
                     /locus_tag="VIU37_09925"
     CDS             complement(917..2752)
                     /locus_tag="VIU37_09925"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014317.1"
                     /translation="MVIDQPTEFLVQPVDASWLQCNIECQEACPVGTNCRGYLNLAAE
                     GRFEEGYILSRDPNPVAAMCSYVCSAPCERACRRGDIDRPLAIRAMKRFLVEWHEASG
                     IPDVMPQITPREERVAVVGAGPAGLAVARELAMKGYKVTVFDSLPYGGGTMLIGVPAF
                     RLPREAIEMDVRLVERLGVRFVFDTKVGVDVTFDELQRDYDGIAITAGAMDAVALDIP
                     GADLEGVDYGVDFMKKANLGQPLTVGTDVVVIGGGYTAMDCSRTSLRHGADRVSIVYR
                     RTRSELVVDEEELGETEREGVRMEFLASPIEIVGKDGKVAAVRFIRNRLGEPDASGRR
                     SPVPIEGSEFEIPAQTVIPAVSQAADLTFLPVESKFEINRGRVKVDPATYATNVRGVF
                     ACGDFVTGPTTLIEAAGHGKKCAYAIDRYLAGRADVSVAANVKITSSWRHDMPEFYDV
                     LPRQHIPMVPLTARMPSTEPAVNFNTPVELGYDASAAVAESTRCLMCNYNIWFDPFRC
                     VLCGACADVCPEGVIHMVDVNQLKSEGLLPELEEAYGWDNGSAMILDEERCIRCALCV
                     KRCPFDAITMERFELQEISTDGRLYKESYRDAQLAGTPGVAGGAR"
BASE COUNT          504 a         1019 c         1060 g          487 t
ORIGIN      
        1 gtgcggccag gtcatgaccg tgtcgtcggg ttccttctgg actcggacga cggcgtcctg
       61 cttgaccagc gccagcagcc ggtacggtcg cgcggacatc gggacgcgct gcttgtcgat
      121 ctcggtccgt cgcgccggat cgaccggctg gacgatgcgc ttctcggtct cgacgggcgg
      181 cttcgtgtcg gtcatagcgg ccccgagatc ccgccgtcct tccggatcct ccagaagtgg
      241 acggccagga agatggcggc aatgaggggc aggaagatga cgtgccccac gtagaaccgc
      301 agcaacgtgt tctgcgcgac ctccaggccc ccgaggagga tcagcttcgt cggcgtgttg
      361 aacagcggcg catagccgcc catgttcgtg ccgatcgtga tcgcccagta ggcgatctgg
      421 tcccacggca gcaggtagcc ggtgaagctg agcatgatcg tcaggaacag cagcaccacc
      481 ccgacgaccc agttgaactc acgcggcggc ttgtaggccc cgtggtagaa gacccgcatc
      541 atgtgcagga agacgaagaa caccatcagg tgggcggccc accggtggat gttccgggtc
      601 agcaacccga acgtcacctg gctctggatc tcgaggatgt tggtgtacgc ctgggtcgcc
      661 gacggcacgt agaagaacat caggtagacg ccggtgaccg tcagcaccag gaacaggaag
      721 aacgacagcc cgcccaggca gaacgtgtag gcgaacttga ccgcgtgctg gcggacgcgg
      781 accgggtgga tgtgcaggaa gacgttgttc atgaccgcgt acgcgcgcga ccgctcgtcg
      841 cgcgggtacg gctggcggaa cagcgaccgc cacatggcgc tccggcggat gctctggtcc
      901 acccgctcga ggaaactcac cgggctcctc ctgccacgcc gggcgtcccg gcgagttgcg
      961 cgtctcggta cgactccttg tagagccgtc cgtcggtcga aatctcctgg agctcgaacc
     1021 gttccatcgt aatggcgtcg aacgggcaac gcttgacaca caaggcgcag cgaatgcagc
     1081 gctcctcgtc gaggatcatc gcgctcccgt tgtcccagcc ataggcctcc tcgagctcgg
     1141 gcagcagccc ctccgacttg agctggttga cgtcgaccat gtggatgacg ccttccgggc
     1201 agacgtcggc gcaggcgccg cacagcacgc agcggaacgg gtcgaaccag atgttgtagt
     1261 tgcacatcag gcaacgcgtc gactcggcga ccgcggcact ggcgtcgtag ccgagctcga
     1321 ccggcgtgtt gaagttgacg gcgggctcgg tcgacggcat ccgagcggtc aacggcacca
     1381 tcgggatgtg ctggcgcggc aggacgtcgt agaactcggg catgtcgtgg cgccaggagc
     1441 tggtgatctt gacgttcgcg gcgaccgaca cgtcggcccg gccggccagg tagcgatcga
     1501 tggcgtaggc gcacttcttg ccgtggcccg ccgcctcgat cagcgtcgtc gggccggtca
     1561 cgaagtcgcc gcaggcgaac acgccccgga cgttggtggc gtacgtcgcc gggtccacct
     1621 tgacccgccc gcggttgatc tcgaacttcg actcgaccgg caggaaggtg aggtccgcgg
     1681 cctgcgagac cgcggggatc acggtctggg ccgggatctc gaactcggag ccctcgatcg
     1741 ggaccggcga ccggcggccc gaggcgtcgg gctcgcccag ccggttgcgg atgaagcgga
     1801 ccgcggcgac cttgccatcc ttcccgacga tctcgatcgg gctggccagg aactccatcc
     1861 gaacgccttc gcgctcggtc tcgccaagct cctcctcgtc gacgacgagc tcggagcggg
     1921 tccggcggta gacgatcgac acgcggtcgg cgccgtggcg gaggctcgtc cgcgagcagt
     1981 ccatcgcggt gtagccgccg ccgatgacga ccacgtcggt cccgacggtg agcggctggc
     2041 cgaggttcgc cttcttcatg aagtcgacgc cgtagtccac gccctcgaga tcggcgccgg
     2101 ggatgtcgag tgcgaccgcg tccatcgcgc cggccgtgat cgcgatcccg tcgtagtcgc
     2161 gctggagctc atcgaacgtg acgtccacgc cgaccttcgt gtcgaacacg aagcggacgc
     2221 ccaggcgctc cacgaggcgg acgtccatct cgatcgcctc gcgcggcagc cggaaggcgg
     2281 gcaccccgat gagcatcgtg ccgccgccgt acggcaggct gtcgaagacg gtgaccttgt
     2341 agcccttcat cgccagctcg cgcgcgacgg ccaggccggc cggccccgcg ccgaccaccg
     2401 cgacgcgctc ctcgcgcggc gtgatctgcg gcatgacgtc ggggatgccg gaggcctcgt
     2461 gccactcgac gaggaaccgc ttcatcgcgc ggatcgccag cggccggtcg atgtcgccgc
     2521 ggcggcaggc ccgctcgcac ggcgcggagc agacgtacga gcacatcgcg gcgaccgggt
     2581 tcggatcgcg cgagaggatg tagccctcct cgaaacgacc ctcggcggcc aggttcaggt
     2641 agccacggca gttggtcccc accgggcagg cttcctggca ttcgatgttg cattggagcc
     2701 aggacgcgtc cacaggctgg acgaggaatt ccgtgggctg gtcgatgacc aagcgggcgt
     2761 gcctttccct gatgctcgaa gaccggtcgg ggatggacga tcggaggtgg cgccgacgcg
     2821 cggaatctac catcggtccc cggcgacgtg cacgattggt tgcggtgcga gacagcgccg
     2881 gtctggagca ccccttgaga tcggccggat gttcgatccg gagttgacga tgctcgtgga
     2941 cgcagctacg ctgcggaacg atatcgtcgc gcccacctgg gagcctcaac cggagatgcg
     3001 ggccgcgtga ccgtcagcga gttcaccttc ctggctctcg gcctggtcct cggcctcgcc
     3061 agcggcatcg
//
LOCUS       DATDDI010000687         2047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_285242, whole genome shotgun sequence.
ACCESSION   DATDDI010000687 DATDDI010000000
VERSION     DATDDI010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285242"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VIU37_09930"
     CDS             <1..231
                     /locus_tag="VIU37_09930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014318.1"
                     /translation="IVIGIVMTPVGGSYLRGLRLAIGQRPRSAKPEEPDPVPASDGEL
                     AALQASNRPETLLLLGAGGFVVILWLMMFRPF"
     gene            283..1320
                     /locus_tag="VIU37_09935"
     CDS             283..1320
                     /locus_tag="VIU37_09935"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY6014319.1"
                     /translation="MRVAHVRERNAPAGAPWRLAAATGSGDAWLDLETGRRRLLAADP
                     RRAHNAILFRQPLTTTDELFARGIRLAALGELLEAFVASGGARDEDDDAVLDASDLRF
                     GAPVLRPPAFRDFYAFERHVRTMWERRGGEIPEAWYRLPIFYFSNTSEMRGPGDPVWA
                     PRGSAELDFELEVGAVVDTPALDLEADRAEEAIGGYFILNDWSARDLQRDETTVRLGP
                     AKGKDFASSIGPWLVTPDELASARPDGATGPDLAMTAEVNGAETSRGRWSDAQFSFGQ
                     MLARASADARLRPGDLVGSGTVGGGSLLENRESTLGRFLEPGDEVVLRVERLGTLRTP
                     IVDRPSITADG"
     gene            1361..1885
                     /locus_tag="VIU37_09940"
     CDS             1361..1885
                     /locus_tag="VIU37_09940"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014320.1"
                     /translation="MRAPILLEAMTADDWPQVHRIYAEGIATTFATLDSEAPDWNHFN
                     HSHRHDCRLVARDRPGGPVLGWTALTAYSQRRVYAGVAWESVYVGEAARGRGVGRALL
                     EAIIPASEAAGLWTLLAAVLEENAASLALHEAVGFRRVGVGRGLGQDGAGRFRDVVLL
                     ERRSAVIGVAPGGG"
BASE COUNT          254 a          729 c          756 g          308 t
ORIGIN      
        1 atcgtcatcg gcatcgtgat gacgccggtc ggcggcagct atctccgggg actgcgcctc
       61 gcgatcgggc aacgcccgcg cagcgccaag ccggaggagc cggatcccgt gcccgcatcg
      121 gacggcgagc tcgcggcgct gcaggcgtcg aatcgcccgg agacgctcct gctcctcggc
      181 gccgggggct tcgtggtcat cctctggctg atgatgttcc gcccgttctg aatggattct
      241 ggcccgcctg gccatcaacc cggcgggcct agactccgag gcatgcgggt tgcccacgtt
      301 cgcgagcgca acgcgcctgc cggtgcaccg tggcggctgg ccgcggcgac agggagcggc
      361 gacgcctggc tcgacctgga gaccgggcgg aggcgcctgc tcgccgcgga tccccggcgc
      421 gcccacaacg cgatcctctt ccggcagcca ctcacgacca ccgacgagct gttcgctcga
      481 ggcatccgcc tcgcggccct cggcgagctg ctcgaagcgt tcgtcgcttc aggcggggcc
      541 cgcgacgagg acgacgacgc ggtcctcgac gcgtccgacc tgcggttcgg ggcgccggtc
      601 ctccggcccc ccgcgttccg ggacttctac gcattcgagc gccacgtccg gacgatgtgg
      661 gagcgccgcg gcggcgagat ccccgaggcg tggtatcgcc tgccgatctt ctacttctcg
      721 aacacctcgg agatgcgcgg tcccggcgac ccggtctggg cgccgcgtgg ctcggcggag
      781 ctcgacttcg agctcgaggt cggggcggtc gtcgacaccc cggcgctcga tctcgaggcg
      841 gaccgggccg aggaggcgat cggcggctac ttcatcctga acgactggtc ggcccgtgac
      901 ctccagcgcg acgagacgac ggtccggctc gggccggcca agggcaagga cttcgcgagc
      961 tcgatcgggc cgtggctcgt gacgcccgac gagctggcct cggcgcggcc cgacggcgcg
     1021 accgggcccg acctggcgat gaccgccgag gtcaacggcg ccgagacctc gcgcggccgc
     1081 tggtccgacg cgcagttctc gttcggccag atgctcgctc gcgcctctgc cgatgcgcgg
     1141 ctgcgccccg gcgacctggt cggcagcggc accgtgggcg gcggctcatt gctggagaac
     1201 cgcgagagca cgctcgggcg cttcctggag cccggcgacg aggtggtcct tcgggtggag
     1261 cggctgggca cgctccggac gcccatcgtc gaccggccgt cgatcacggc ggacggttga
     1321 tgggcagcag cctcgggcat gtttggctac ggttcgggtc atgagggcgc ccatcctgct
     1381 cgaagccatg accgctgacg actggccgca ggttcaccgg atctacgccg aggggatcgc
     1441 gacgacgttc gcgaccctcg acagcgaggc tcccgactgg aaccacttca accattcgca
     1501 ccggcacgac tgccggctgg tcgcgcgcga tcgtcccggc gggcccgtcc tcggctggac
     1561 ggcgctgacc gcctactccc agcgacgcgt ctacgcgggc gtggcctggg agagcgtcta
     1621 cgtgggcgag gcggcgcgtg gtcgcggcgt ggggcgggcc ctgctcgagg cgatcatccc
     1681 ggcctccgag gccgcggggc tgtggacgct cctcgcggcc gtgctggagg agaatgccgc
     1741 cagtctcgcg ctccacgagg ccgtgggctt ccgccgggtc ggagtggggc ggggattggg
     1801 ccaggatggt gctggtcgct tccgggacgt cgtcctgctc gagcggcgga gcgccgtcat
     1861 cggtgtggcc ccgggcggtg ggtgatcgtt tccggagaca tgggccaccg ctcggagctc
     1921 gcgcgacggg tcggcctccc gactcgcgtc agccgattcg gcccaccagt ccgagtcgcg
     1981 tggccactgc ggccgcctcc gtccggctcg acacgtcgag cttgcccagg atgttcgaga
     2041 cgtggac
//
LOCUS       DATDDI010000688         2051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_617908, whole genome shotgun sequence.
ACCESSION   DATDDI010000688 DATDDI010000000
VERSION     DATDDI010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617908"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..603)
                     /locus_tag="VIU37_09945"
     CDS             complement(97..603)
                     /locus_tag="VIU37_09945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014321.1"
                     /translation="MSEPADPWPTSTCTCTPGMLPTRSCPVHGDRPTRAGIASELRRV
                     AAQMTALADRVDPPPTRPEPPDLPDVSPGSVLVAAERLRQIDEEGHDPDHDAAHRGNE
                     LAWGAYAYLERAAQDRLPQDDPSVPHIWPWPRREWKPKGTRVRNLVIAAALVVAEIDR
                     RLREGEKA"
     gene            complement(603..896)
                     /locus_tag="VIU37_09950"
     CDS             complement(603..896)
                     /locus_tag="VIU37_09950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014322.1"
                     /translation="MTTAPGLAPITRLTDPELRAARAADLLDRLQTQHEARTAAVIEV
                     RDQACRELLARGWSAAKVARTIHRTRALVAKRFPAEVEGDNGDNGDPPEAVAG"
     gene            complement(958..1434)
                     /locus_tag="VIU37_09955"
     CDS             complement(958..1434)
                     /locus_tag="VIU37_09955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014323.1"
                     /translation="MTPADLADLAESLVPVAAQLVGAVHDDGPGEVGRILSAVDPGHL
                     PGLAVVLAAMVDPDASAAELLAWVTWDDSPPPREATLFGATFGDYVPSARPASLDPRE
                     WSDDYCRSLHVAWRKRQRGTGDPLGTPRIEQMGHREWDRRRKADARARQHPSTRVS"
     gene            complement(1431..1769)
                     /locus_tag="VIU37_09960"
     CDS             complement(1431..1769)
                     /locus_tag="VIU37_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014324.1"
                     /translation="MGAQQLDFWDESDTVLSEQVPGIGRVLTTPGGGWRARWTGTRFG
                     WQFDRAITWTAWTGRRYSGWEPWEPDLPYGVEHVLDRGWAVELVAAFAARLGDDPGWL
                     ERRRRLAPVR"
BASE COUNT          239 a          767 c          773 g          272 t
ORIGIN      
        1 gctcccactt gtcggggtgc cggaacgaca tcggcgtcac gagccccgac gcgacgatgc
       61 cgtcccggga gtgcacgcac gtgaagtggt acagggtcac gccttctcgc cctcgcggag
      121 ccggcggtcg atctccgcga cgaccagggc ggcggcgatg acgaggttcc gcacccgggt
      181 ccccttcggc ttccactccc gccgcggcca cggccagatg tgcggcaccg acgggtcgtc
      241 ctgcggcagc ctgtcctgcg cggcccgctc gaggtaggcg tacgcccccc acgcgagctc
      301 gttcccccgg tgcgccgcgt cgtggtccgg gtcgtggccc tcctcgtcga tctgccgcag
      361 ccgctcggcg gcgacgagca ccgagcccgg ggacacgtcg ggcaggtccg gcggctcggg
      421 cctggtcggc ggcgggtcga cccggtcggc cagcgcggtc atctgcgcgg ccacccggcg
      481 cagctcggag gcgatgccgg cgcgggtcgg ccggtcgccg tggaccgggc aggaccgggt
      541 cggcagcatc cccggcgtgc aggtgcacgt cgaggtcggc cacgggtcgg cgggctcgct
      601 catcatccgg cgacggcctc cggcgggtcc ccgttgtcgc cgttgtcgcc ctcgacctcg
      661 gccgggaacc gcttcgcgac gagcgcgcgg gtccggtgga tcgtgcgggc caccttggcc
      721 gcggaccaac cgcgggcgag gagctcgcgg cacgcctggt cgcggacctc gatgaccgcg
      781 gccgtccgcg cctcatgttg ggtctgcagg cggtcgagca ggtcggcggc cctggcggcc
      841 ctcagctcgg ggtcggtcag gcgggtgatg ggggcgaggc ccggggcggt agtcacgatg
      901 acgaccgtaa ccttggggcg ccctctcgtg ggattggcta ccgtcgcgct catgtgatca
      961 ggatacccgg gttgacgggt gttgtcgcgc ccgcgcgtcc gccttccgcc gacggtccca
     1021 ctcccggtgg cccatctgct cgatgcgggg ggtccccagc gggtcgccgg tgccgcgctg
     1081 ccgtttccgc cacgcgacgt gcagcgaccg gcagtagtcg tcggaccact cccgcgggtc
     1141 gagcgacgcc ggccgggcgg acgggacgta gtcgccgaac gtcgccccga acagcgtcgc
     1201 ctcccgcggc ggcgggctgt cgtcccacgt cacccacgcg agcagctcgg cggcggacgc
     1261 gtccgggtcg accatcgcgg cgaggacgac ggcgaggccg ggcaggtggc ccgggtcgac
     1321 ggcggacagg atgcgtccga cctcgccggg cccgtcgtcg tggacggcgc ctacgagctg
     1381 cgcggccacc gggacgaggg actcggcgag gtcggcgagg tcggcggggg tcaccggacc
     1441 ggcgcgagcc ggcggcggcg ctcgagccag ccggggtcgt cgcccagccg ggcggcgaac
     1501 gccgcgacga gctcgacggc ccacccgcgg tcgaggacgt gctccacgcc gtagggcagg
     1561 tccggctccc acggctccca gccgctgtat cggcggccgg tccacgcggt ccaggtgatc
     1621 gcccggtcga actgccaccc gaaacgggtc ccggtccacc gggcccgcca cccgccgccg
     1681 ggggtggtca gcacccggcc gatcccgggg acctgctccg acaggaccgt gtccgactca
     1741 tcccagaagt ccaactgctg cgcgcccatt ccccacgctc ctcccgcacc gcgacgaccg
     1801 tggtggcggc tccggggact ggggggccgc cgaggggttt gctaaccccg gttgacgacc
     1861 ctaccgctac gggcgtcaac cggggtagga atcgcccggc gtgtcgtgaa gtatccgtca
     1921 atccggcccg ccgtccggga cggtccgcgt caacccgagt tgcacgaggt cgtcgtcgtc
     1981 gaggtcggcg agctccgcgc cctcccccaa cacgagcagc gggccggtgc cgtaccgctg
     2041 ctgcaggccc t
//
LOCUS       DATDDI010000689         3051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_347674, whole genome shotgun sequence.
ACCESSION   DATDDI010000689 DATDDI010000000
VERSION     DATDDI010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347674"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VIU37_09965"
     CDS             complement(<1..391)
                     /locus_tag="VIU37_09965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014325.1"
                     /translation="MRIHRGFLGWGVFLILAGAIPLAVRAGYLTDDQLRNVGNLWPLI
                     LVGIGVGLILSRTHYGFLGGMIVAATFGVIVGGLLAGSIGGIDLGCGSGRGTTAFGPQ
                     QGPLTTSSASVDIDLSCGDLTVAVAPGS"
     gene            595..1017
                     /locus_tag="VIU37_09970"
     CDS             595..1017
                     /locus_tag="VIU37_09970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014326.1"
                     /translation="MAAAVDALVLLGSDRDPDCWVAWGDDPGARYTILALTPAGLAVV
                     NVRVNVPGEGPRAAGKIVRWHRVSAGELSVEIHGGHRLMTFQLESQILHGSDEEADEV
                     AQFVRAVFAAIDGRPTQPAGAIALPGPVAGQSSEPAAR"
     gene            1036..1800
                     /locus_tag="VIU37_09975"
     CDS             1036..1800
                     /locus_tag="VIU37_09975"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY6014327.1"
                     /translation="MPTPGARNDTLPAWRRRLRYWISRIAVWVLVRCYVRIRFVGREW
                     LPQEPAIYCFNHLGWVDPFILMAVLPMRPRLYFFGPKEEDMRVGARNRLMAWTGSSIP
                     FRPEKDDLLGVTRRVQSILSGGGVIAIAGEGRIHASESELWPIDEGTAFFALRASVPI
                     VPIAINGTSWLHLGATVSVRVGEPLRAIGRPDRETVQALTARTWAALHAMVRDAPEVP
                     EPGRFGRWVTDRFNDWPEGSREATRAAGLARRASGS"
     gene            1845..2210
                     /locus_tag="VIU37_09980"
     CDS             1845..2210
                     /locus_tag="VIU37_09980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014328.1"
                     /translation="MGATGLSADPAEYKARLADQTDEQIDAWAAELMRDVAIRRGVVR
                     VVEDFRTASGIDERAFERVFASGGGPPAVIGRDAAGRLMVPAITLHALVPGIRAQVAD
                     GRDRLIAYLVANFGEIVYV"
     gene            2212..>3051
                     /locus_tag="VIU37_09985"
     CDS             2212..>3051
                     /locus_tag="VIU37_09985"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEY6014329.1"
                     /translation="MRLAPLSLIGGLIRLVHPFPILLDGIASGAFALLAGGDGGVAVR
                     LGIAMVALQASIGVLNDVVDAADDAVSKPDKPIPAGLVAPSVAEAVSAGSAVVGLLLA
                     AVSGPGLLLLAAVGLAIGYGYDLAAKGTPWSWVPFAIGIPLLPVFGWYGAAGGLPALF
                     ALLVPLAIVAGAALAIANAIADASRDRAAGVGSVAIRLGTARAWAIGAAMQAAVGLVA
                     LGSAWVAGAHAPALAAIVAGLGLVVAGLRLGRSASPVILERAWEVQAIGIVVLAVSWL
                     WGMG"
BASE COUNT          398 a         1060 c         1135 g          458 t
ORIGIN      
        1 tactgccggg ggcgaccgcc accgtgaggt cgccgcagct gaggtcgatg tcgacggagg
       61 cggacgacgt ggtcagcggg ccctgctgcg gcccgaatgc cgtcgtgccc cggccggacc
      121 cgcagccgag gtcgatgcca ccgatgctcc cggcgagcag cccgccgacg atgacgccga
      181 acgtggccgc cacgatcatc ccgcccagga acccgtaatg ggtccgtgac aggatcagcc
      241 ccacgccgat cccgaccagg atcaggggcc agaggttacc gacgttgcgg agctggtcgt
      301 cggtcaggta gccggcccga acggccagcg gaatcgcccc ggcgaggatc aggaagacac
      361 cccaaccgag aaagccacga tggatacgca tgcgctgacg gtaccggacg gaccgcgacc
      421 ggcaaatggc cgaatggcct gaaccccacg ggacgtgacg cctgtgtgct agcctcgcgc
      481 cgggccgcgt ccgagaccgg atcgcggctc gggcaggcac agcggagggc cggcatgcgc
      541 ctcagcgtgt ggcaatcgcg gtcatcgcat cccgaatcga tggcgaccag ggtcatggct
      601 gcggccgtcg atgcgctggt cctgctcggc tcggaccgtg atccggactg ctgggtcgcg
      661 tggggcgacg acccgggcgc ccgatacacg atcctcgccc tgacgccggc cgggctggcg
      721 gtcgtcaacg tgcgcgtgaa cgtgcccggc gaggggccgc gggccgccgg caagatcgtg
      781 cgctggcatc gggtctcggc cggcgagctg tcggtcgaga tccacggcgg gcaccgcctg
      841 atgaccttcc agctcgaatc ccagatcctc cacgggtccg acgaggaggc cgacgaggtc
      901 gcgcaattcg tccgggccgt cttcgcggcc atcgacggcc gcccgacgca gccggccggc
      961 gccatcgcgt tgcccggtcc cgtggcgggc cagtcgtcgg agccagcggc ccgctagggc
     1021 aatcgggccg ccaccatgcc gacgccggga gcccgcaacg acacgctccc cgcctggcgt
     1081 cgccgcctcc gctactggat ctcccggatc gcggtctggg tcctcgtccg gtgctacgtg
     1141 cgcatccgct tcgtgggtcg agaatggctg ccgcaggaac cggcgatcta ctgcttcaac
     1201 cacctcgggt gggtggaccc gttcatcctg atggccgtcc tcccgatgcg accccggctc
     1261 tacttcttcg gtccgaagga ggaggacatg cgggtgggcg cgcggaaccg gctgatggcc
     1321 tggacggggt cgtccatccc gttccggccc gagaaggacg acctgctcgg cgtcacgcgc
     1381 cgggtccagt cgatcctgtc gggcggcggg gtcatcgcca tcgccggaga gggccggatc
     1441 cacgcctcgg aatcggagct ctggccgatc gacgaaggca cggcgttctt tgccctgcga
     1501 gcgtcggtgc cgatcgtccc gatcgcgatc aacgggacca gctggctgca cctcggcgcg
     1561 acggtcagcg tcagggtggg ggagccgttg cgggcaatcg gcaggccgga tcgcgaaacc
     1621 gtccaggcgc tgaccgcgcg gacctgggcg gcattgcacg cgatggtccg ggatgccccg
     1681 gaggtgccgg aacccgggcg attcgggcga tgggtcacgg accggttcaa cgactggccc
     1741 gaagggtcgc gggaggcgac ccgtgccgcc gggctggccc gccgcgcgag cggcagctga
     1801 ccgtctggca tactgctggg cattcgggac atgcaggagg gatcgtgggc gcgactgggt
     1861 tgtcagccga tccggcagag tacaaggcgc ggctcgccga ccagaccgac gagcagatcg
     1921 acgcctgggc cgctgagctg atgcgcgacg tggcgatccg tcgcggcgtc gtccgcgtgg
     1981 tagaggactt ccggaccgcg agcggcatcg acgagcgcgc attcgaacgg gtgttcgctt
     2041 ccggtggtgg accgcccgcc gtgatcggcc gcgacgccgc cggccggctg atggtccccg
     2101 cgatcacgct gcacgccctg gtccccggga ttcgagccca ggtcgcggac ggccgcgacc
     2161 ggttgatcgc gtatctcgtg gccaacttcg gggagatcgt ctacgtctga ggtgcgcctg
     2221 gcacctctct ccctgatcgg cggcctgatc cggctggtgc atccgttccc gatcctgctc
     2281 gacgggatcg cgagcggagc cttcgccctg ctcgccggcg gcgacggggg agtggccgtg
     2341 cgcctcggca tcgcgatggt cgcgctgcag gcctcgatcg gcgtgctcaa cgacgtcgtc
     2401 gacgccgccg acgatgcggt ctcgaagccg gacaagccga tcccggccgg gctggtcgcg
     2461 ccgagcgtcg ccgaggcggt ctccgcaggg tcggcggtgg tcgggctcct cctggcggcg
     2521 gtctcggggc ccgggctcct gctcctcgcc gccgtgggac tcgcgatcgg ctatgggtac
     2581 gacctcgcgg cgaagggaac gccctggtcg tgggtcccgt tcgcgatcgg catcccgctg
     2641 ctcccggtat tcggctggta cggcgccgcg ggcggcctgc cggcattgtt cgcgctgctc
     2701 gttccgctcg cgatcgtggc cggggctgcc ctggccatcg ccaacgcgat cgccgacgcc
     2761 tcgcgcgatc gggccgccgg cgtcggctcg gtcgccatcc ggctcgggac ggcacgtgcc
     2821 tgggcgatcg gcgccgcgat gcaggcagcc gtcgggctgg tcgccctggg ttcggcgtgg
     2881 gttgcgggcg cccatgcgcc ggcgttggcc gcgatcgtcg cgggcctcgg actggtcgtc
     2941 gccggcctgc gtctcggacg atcggcgtcg cccgtcatcc tcgagcgtgc ctgggaggtg
     3001 caggccatcg ggatcgtcgt cctggcggtc agctggctgt gggggatggg c
//
LOCUS       DATDDI010000690         1512 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_181225, whole genome shotgun sequence.
ACCESSION   DATDDI010000690 DATDDI010000000
VERSION     DATDDI010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181225"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..>1512)
                     /gene="pckA"
                     /locus_tag="VIU37_09990"
     CDS             complement(106..>1512)
                     /gene="pckA"
                     /locus_tag="VIU37_09990"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR00224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEY6014330.1"
                     /translation="FVVREPWSQDKVWWGDVNHEISEANYDRLRARLVSYVADKELYA
                     QDMYIGAHPAHRRSLRVYTETAWASIFARNLFRRPTAEQLDGFEPNFTIINVPSFQAD
                     PATDGTRTGPAILVHLRRMEVIIVGTEYAGEIKKSAFTVMNYLMPDEGVLPMHSAINV
                     GADGDAAVFFGLSGTGKTTLSADPRRSLVGDDEHGWGDGITFNFEGGCYAKTIRLSPM
                     YEPDIFQTTRRFGTILENVDVDPRTRELDLDSERFTENTRGAYPLEFIGNADPTGIAG
                     TPRAVIFLTADAFGVLPPIARLSREQAAYHFISGYTAKLAGTEVGIKEPKATFSACFG
                     APFMPRHPGEYAHMLVGRLEQDDVPVWLVNTGWTGGPFGTGERMNIAHTRSMVRAALD
                     GSLAKVATRTDPIFGVEVPTSCPDVPDRFLDPRSTWSDPDAYDRQARQLARMFADNFT
                     AYADGVSDLIVAAGPRVE"
BASE COUNT          219 a          496 c          553 g          244 t
ORIGIN      
        1 atcctgctcg ccttcggtgt ccggcgagcg aacgaagggc ttgccgcgac cgcgtgatcc
       61 cgccggccgg ctcagtcgac ccggcgggtc actcgacccg gcgggtcact cgacccgggg
      121 gccggccgcc acgatgaggt cgctgacccc gtccgcatac gccgtgaagt tgtcggcgaa
      181 catgcgcgcc agctggcgcg cctgccggtc gtaggcgtcc ggatcggacc aggtcgagcg
      241 cgggtccagg aagcggtccg ggacgtccgg acagctggtc gggacctcga cgccgaagat
      301 cggatcggtg cgcgtggcga ccttggccag gctgccgtcg agcgccgccc gcaccatcga
      361 gcgggtgtgt gcgatgttca tccgctcccc ggtaccgaac gggccgcccg tccaaccggt
      421 gttgaccagc cagaccggca cgtcgtcctg ctctagccgg ccgaccagca tgtgcgcgta
      481 ctcgccgggg tgacgcggca tgaacggggc gccgaagcag gccgagaagg tcgccttcgg
      541 ctccttgatc ccgacctcgg tgccggccag cttggcggtg tagccgctga tgaagtggta
      601 ggcggcctgc tcacggctga ggcgggcgat cggcggcagg acgccgaacg cgtcggccgt
      661 caggaagatc acggcccgcg gcgtgccggc gatgccggtc gggtcggcgt tgccgatgaa
      721 ctcgagcgga taggcgccgc gggtgttctc ggtgaaccgc tcggagtcga gatcgagctc
      781 gcgcgtgcgc gggtccacgt cgacgttctc gaggatggtc ccgaaccgcc gcgtcgtctg
      841 gaagatgtcc ggctcgtaca tcggcgagag ccggatggtc ttggcgtagc aaccgccttc
      901 gaagttgaag gtgatgccgt cgccccagcc atgctcgtcg tcgccgacca ggctccggcg
      961 gggatcggcc gacagggtgg tcttgccggt gccggagagc ccgaagaaga cggcggcgtc
     1021 gccgtccgcc ccgacgttga tcgccgaatg catcgggagg acgccctcgt cgggcatcag
     1081 gtagttcatg accgtgaagg ccgacttctt gatctcgccg gcgtactcgg tgccgacgat
     1141 gatcacctcc atccggcgca ggtggacgag gatcgccggc ccggtccgcg tgccgtcggt
     1201 tgccggatcg gcctggaacg agggcacgtt gatgatcgtg aagttgggct caaagccgtc
     1261 gagctgctcg gcggtgggtc gccggaacag gttgcgagcg aagatgctcg cccaggcggt
     1321 ctcggtgtag acgcgcaggc tgcgacggtg cgccgggtgc gccccgatgt acatgtcctg
     1381 ggcgtagagc tccttgtcgg cgacgtacga caccagccgc gcgcgcagcc ggtcgtaatt
     1441 cgcctcgctg atctcgtggt tgacgtcgcc ccaccagacc ttgtcctggc tccagggctc
     1501 gcggacgacg aa
//
LOCUS       DATDDI010000691         1541 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_264676, whole genome shotgun sequence.
ACCESSION   DATDDI010000691 DATDDI010000000
VERSION     DATDDI010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264676"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /locus_tag="VIU37_09995"
     CDS             <1..473
                     /locus_tag="VIU37_09995"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEY6014331.1"
                     /translation="ANRNAPGQVVVSGERTAIDASAEIAKSLGAKRAIVLPVSVAAHS
                     PLMAEAAAGMRAVLASVEFHDPSAPLLANADARPLTTAAACRAELVDHLTAGVDWVRA
                     VESMRAAGVTTFVEVGPGKVLTNLIKRIAPDTTAWALDEPGTPDRFALPTPVPA"
     gene            498..>1541
                     /locus_tag="VIU37_10000"
     CDS             498..>1541
                     /locus_tag="VIU37_10000"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY6014332.1"
                     /translation="MRTPDYQRRVVVTGLGVVSPVGNDKATAWSNLVNGNSGLGEITR
                     FDVSGYEHKFGGEVHDFDASAWMEPKAVRRSEREMHFGVSAAKQAIADSGFEITDSNR
                     TDVGVVFGSGAGGQLLMIESYITLKERGPNRVPPTFIANALVDSTSGMIAIETGAIGH
                     NVAMVSACATGTHNVAEGAEAIRRGDCIAVISGSTEAPLIEVAHAGFENMRGLGMPRP
                     GEPIQTVSRPFDLTRNGFVLGEGAGSLFLEDLELAKARGAHIYAEVVGYGSAADGWDM
                     IQPIEGGSGSARAMRMAVERRGVPADEVDVINPHGTSTPLGDKREAEAIWTVFGERSA
                     ATAKSLAISGTKSM"
BASE COUNT          227 a          587 c          529 g          198 t
ORIGIN      
        1 tcgcgaaccg caacgcgccg ggccaggtcg tcgtgtccgg cgagcgcacc gccatcgacg
       61 cctcggccga gatcgcgaag tcgctcgggg cgaagcgcgc catcgtcctg ccggtgtccg
      121 tggccgccca ctcgccgctc atggccgagg ccgcggcggg catgcgcgcg gtcctcgcct
      181 cggtcgagtt ccacgacccg tccgcgccgc tgctggccaa cgccgacgcg cggccgctga
      241 cgacggcggc ggcgtgccgc gccgagctcg tggaccacct caccgccggc gtcgactggg
      301 tccgcgccgt cgagtcgatg cgcgccgccg gcgtgacgac cttcgtcgag gtcgggcccg
      361 gcaaggtcct cacgaacctg atcaagcgaa tcgcgccgga caccaccgcc tgggccctcg
      421 acgagcccgg gacgccggac cgcttcgccc tgcccacccc cgtccccgcc tagcgtccca
      481 aggagccacc agccaccgtg cgcacccctg actaccagcg ccgcgtcgtc gtcaccggcc
      541 tcggcgtcgt gagccccgtc ggcaacgaca aggccaccgc ctggtcgaac ctcgtcaacg
      601 gcaactccgg actcggcgag atcacccgct tcgacgtctc gggctacgag cacaagttcg
      661 gcggcgaggt ccacgacttc gacgcctccg cctggatgga gcccaaggcg gtgcgccgca
      721 gcgagcgcga gatgcacttc ggcgtctcgg cggcgaagca ggcgatcgcc gactccgggt
      781 tcgagatcac ggattcgaac cggaccgatg tcggggtcgt gttcggctcc ggggccggcg
      841 gccagctgct catgatcgag agctacatca cgctcaagga gcgcggcccg aaccgcgtcc
      901 cgccgacgtt catcgccaac gccctcgtcg actcgacctc ggggatgatc gccatcgaga
      961 ccggtgcgat cggccacaac gtggcgatgg tctccgcctg cgcgacaggg acccacaacg
     1021 tggccgaggg cgccgaggcg atccgccgcg gcgactgcat cgcggtcatc agcggctcca
     1081 ccgaggcgcc cctcatcgag gtcgcccacg ccggcttcga gaacatgcgc ggcctcggga
     1141 tgccccgccc gggcgagccc atccagaccg tctcgcggcc gttcgacctg acccgcaacg
     1201 gcttcgtcct cggcgagggc gccggctcgc tgttcctcga ggacctcgag ctggcgaagg
     1261 cccgcggtgc ccacatctac gccgaggtcg tgggctacgg ctccgcggcc gacggctggg
     1321 acatgatcca gccgatcgag ggcggcagcg gctccgcccg ggccatgcgg atggcggtcg
     1381 agcggcgcgg cgtgccggcc gacgaggtcg acgtcatcaa ccctcacgga acgtcgacgc
     1441 cgctcggcga caagcgcgaa gccgaggcga tctggacggt cttcggggag cgctcggcgg
     1501 cgacggcgaa gtcgctcgcg atcagcggca cgaagtcgat g
//
LOCUS       DATDDI010000692         1766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_451331, whole genome shotgun sequence.
ACCESSION   DATDDI010000692 DATDDI010000000
VERSION     DATDDI010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451331"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1114
                     /locus_tag="VIU37_10005"
     CDS             <1..1114
                     /locus_tag="VIU37_10005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014333.1"
                     /translation="AINPNGCRDEVVLFIADAWGLPIAGDNDDPGPARRRGVRWRDHI
                     RVALLMLTFGFSPFAVRYEITGSPLRAKLAELSERLPQTITDIQLNDDGSLKRVYQQG
                     SRDPLPASGLLWYAHEREGGGWSGRSMIAESYGPWLLKHEMWRTLAQSNRRFGMGVPN
                     VETGPNGTPADVTTAANIASAYRAGDQTGLGLPQGWKFNLTGLTGSVPDTLGFVGYLD
                     AQIATSVLAEILNLDTAQVGNRALGDTIIGLLQMSWRAVADEITDTATGLNVQIVDNN
                     WGEDEPVPGILCTDINRPEVTSEAINALVTCGALTPDLTLENDLRSRFNLPTISEQDR
                     TAAAPTPPAKPAQVPGASVPIVSPNDVPDPNSALAP"
     gene            1111..1359
                     /locus_tag="VIU37_10010"
     CDS             1111..1359
                     /locus_tag="VIU37_10010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014334.1"
                     /translation="MKPFVGLPADVEHLTCSYSPDLDRPQCEASAVLHLAVDSEGWGV
                     VGLLACSRHLAIARATGAVLAEHDARDECRFLTGECWS"
     gene            1356..>1766
                     /locus_tag="VIU37_10015"
     CDS             1356..>1766
                     /locus_tag="VIU37_10015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014335.1"
                     /translation="MTQPDVRAPVALRTIHGIELAAVGTWKASTGETTFTAEDFVDAI
                     AALECPGVRNPVIKLGHQEPDATSGVRWDGEPAVGWVANMRFNGVKQIGDLTGVPAWL
                     ADADENGLSVLAAAYPDRSIEIYRPFECQLGHLHP"
BASE COUNT          272 a          632 c          608 g          254 t
ORIGIN      
        1 cgcgatcaac ccgaacggct gccgggacga ggtggtcctg ttcatcgccg acgcgtgggg
       61 cctgccgatc gccggcgaca acgacgatcc gggcccggcc cggcgccgcg gcgtgcgctg
      121 gcgggaccac atccgggtgg cgctgctgat gctgaccttc ggcttctcgc cgttcgccgt
      181 ccggtacgag atcaccggta gccccctgcg cgcgaagctg gccgaactgt ccgagcggct
      241 gccgcagacg atcacggaca tccagctcaa cgacgacggc tcgctcaagc gggtctacca
      301 gcagggcagc cgcgacccgc ttccggcctc ggggctgctc tggtacgccc acgagcgcga
      361 gggcggcggg tggagcggcc ggtcgatgat cgccgagtcg tacggcccgt ggctgctcaa
      421 gcacgagatg tggcgcacgc tggcccaatc caaccggcgc ttcggtatgg gcgtgccgaa
      481 cgtcgagacc gggccgaacg gcacccccgc cgacgtgacc acggccgcca atatcgcctc
      541 ggcgtaccgg gcgggcgacc agactggcct cggcctgccg cagggctgga agttcaacct
      601 gaccggcctg accggttcgg tgcccgacac gctcggattc gtcggctacc tggacgccca
      661 gatcgcgacg agcgtgctgg ccgagatcct caatctggac accgcgcagg tcggcaaccg
      721 ggccctcggg gacaccatca tcggcctgtt gcagatgagc tggcgggcgg tcgccgacga
      781 gatcaccgac accgcgaccg gcctcaacgt ccagatcgtg gacaacaact ggggcgagga
      841 cgagccggtc cccggcatcc tgtgcaccga catcaaccgg cccgaggtga ccagtgaggc
      901 gatcaacgcc ctggtcacct gtggtgcgct gaccccggac ctgacgctgg agaacgacct
      961 gcggtcgcgg ttcaatctgc cgaccatcag cgagcaggat cgcaccgccg ccgccccgac
     1021 gccgccagcc aagccggctc aggtgcctgg cgcctcggtc ccgatcgtct cgcccaacga
     1081 cgtcccggac ccgaattcgg cgctggcacc atgaagccct tcgtaggtct tccggccgac
     1141 gttgagcatc tcacctgctc ctactcgccg gacctggacc gtccgcaatg cgaggcgtcg
     1201 gccgtgctgc acctggccgt cgactccgag gggtggggcg tcgtcgggct gctggcctgt
     1261 tcccgtcact tggcgatcgc ccgggcgact ggggccgtac tggccgagca tgatgcccgg
     1321 gacgagtgcc ggttcctcac cggggagtgc tggtcgtgac tcaacccgac gtccgggccc
     1381 ccgtcgcgct ccgcaccatc cacggcatcg agctggccgc ggtcggcacg tggaaggcga
     1441 gcacgggcga gacgacgttc acggccgagg acttcgtgga cgccatcgcc gcgctggaat
     1501 gcccgggcgt ccgcaacccc gtgatcaagc tgggccacca ggagccggac gccacttcgg
     1561 gtgtgcggtg ggacggcgag ccggcggtgg gctgggtcgc gaacatgcgc tttaacggcg
     1621 tgaagcagat cggcgacctc accggcgtac cggcctggct ggccgacgcg gacgagaatg
     1681 gactctcggt gctcgccgcg gcgtacccgg accggtcgat cgagatctac cggccgttcg
     1741 aatgccagct cggccatctg cacccg
//
LOCUS       DATDDI010000693         6222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_680648, whole genome shotgun sequence.
ACCESSION   DATDDI010000693 DATDDI010000000
VERSION     DATDDI010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 6222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6222
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680648"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1036)
                     /locus_tag="VIU37_10020"
     CDS             complement(<1..1036)
                     /locus_tag="VIU37_10020"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014336.1"
                     /translation="MRNPFRSRLWRNAAFARVWTAATVSIFGSLITRMALPLAAILVL
                     GSGAFEVAILRSLDLGATLVVGLVAGAWVDRLRRRPVLIWADLGRAALLVSIPVAFAL
                     GVLTYWHLLLVAGLAAVLTTFFDSASNAYLPTIVERDGLVDANGALAASGSAAEFMAF
                     GMSGFLVQWLTAPFAIAIDAASFVASALLLGSIRRHEAPPPPPEDREPVMDEIREGLR
                     LVIHDPVLRAFAGAQMALHLLWGVFGATWFLFVLDDLGLNAATLGVVAGVGGFSSFVG
                     AVVASRATRRWGIGPVAVGAMVLAAIGNAFIPLAPAGLPLIAVGCLVMQQLVADSAVT
                     VYDITETTVRQ"
     gene            1196..2530
                     /gene="ffh"
                     /locus_tag="VIU37_10025"
     CDS             1196..2530
                     /gene="ffh"
                     /locus_tag="VIU37_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018286751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEY6014337.1"
                     /translation="MFDTLSERLRRTLGNLTGRGRISEADVDAAMREVRLALLEADVN
                     FKVVKDFVGRVRERAVGHEILESLSAGQQVVKIVNDELVQLLSAGDRTFHLSGNPAIV
                     SLVGLQGSGKTTSTAKLARHVVKLGRRPLLVAADPYRPAAADQLQTLGKAIDIPVYRA
                     PAGTSVVDIVRGGVEAARRQTRDVVILDTAGRLSLDEELMAEITAVDAAVRPVETLLV
                     VDAMTGQEAVGVAQAFVAAVPVTGLILTKIDGDARGGAALSISAVTGVPVKFLGTGEK
                     TDALELFHPDRLAGRILGMGDILTLVERAQEHIDQKQAAKLEEKIRKASFTLDDMLDS
                     MQQMQKMGPMGQVMSMIPGLGNLAGEAQAAVDRGDLRRTEAIIRAMTPSERRDPTILN
                     GSRRRRIAAGSGTGLPEVNRLVKQFGEMQKLMKQLSGGGKRAAALGAFMGRR"
     gene            2550..4385
                     /locus_tag="VIU37_10030"
     CDS             2550..4385
                     /locus_tag="VIU37_10030"
                     /inference="COORDINATES: protein motif:HMM:NF023260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3352 domain-containing protein"
                     /protein_id="HEY6014338.1"
                     /translation="MTDLDPTTTQPASSPYEPTADAAPATLVQAPESTLRRRPVRWPV
                     AIVLIALVLAVSAFVGILVTGRAPNAKVLGYVPDGTIMYGEARLDLPGDERLALASFL
                     SKFPGFADQAAIESKLTELMDRFVGGVTNGDQAYTSDIQPWFDGELAFALGPLPDPST
                     LSGGGRAAMDQARYLVLVSIKDPAGVTAWFKDVAATSTVAMTDEAYNGANLTLLSGDN
                     GAKGAYAVLDGKVAVFGDVASVKAAVDTQGKGPFAGQPSPKAALDATDSSHLGFMYID
                     MAALLDWSSKASQAGGSSFAPELGLSSSTLRGMLPSWEGVALRVEGDAVVIEGALDRP
                     ASAVGPTENRATSLTDHVPANALVVGVGHDAGKTLIDTLGVYRSEPSMKSLTDGIDQA
                     VGLLGGVDGAFGWMGDAGYVVSQSDGDIEGGLLIATADRAAADRVFTSLRTLLAVGGS
                     QAGISLSDEPYAGTTITTVDLGDLGGLLNQAGVQPGQLGIGSGLPTGHLRLTYAVTDQ
                     IVVIGSGPSFVKHILDTTPATSIASTDRYKSLVGRVGNGTGVTFVDITAIRGLIESAM
                     AGADPSATATYEQEVKPFLAPFDALIESSSVQGNVSTGKFIITVK"
     gene            4432..4686
                     /gene="rpsP"
                     /locus_tag="VIU37_10035"
     CDS             4432..4686
                     /gene="rpsP"
                     /locus_tag="VIU37_10035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEY6014339.1"
                     /translation="MAVRIRLTRVGATKQPSYRVVVTDGRSARDGRSIETLGHYNPRT
                     EPVEFQVDADKAKAWLAKGAQPSDTVLRLFRAAGIVPAAK"
     gene            4697..4861
                     /locus_tag="VIU37_10040"
     CDS             4697..4861
                     /locus_tag="VIU37_10040"
                     /inference="COORDINATES: protein motif:HMM:NF024483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEY6014340.1"
                     /translation="MAAKDLVEYVAKSLVDDPSAVTVDVIDEDGTTVIELHVAEDDMG
                     KVIGRNGSVA"
     gene            4948..5622
                     /gene="rimM"
                     /locus_tag="VIU37_10045"
     CDS             4948..5622
                     /gene="rimM"
                     /locus_tag="VIU37_10045"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEY6014341.1"
                     /translation="MVALVRGVHGLHGAVRVEVLTDRPDDRFVPGAVLYREGDSRPLT
                     LAGAEAVADGPGWRLRFREITSRDGADTLRGAYLEAAVRPDEDLARGAYYWHEVIGVA
                     VRGVDGADLGTVQDVYRVAENEVFIVGGGPYGSFDLPAVRAFIRIFAPRRGEIVVDAD
                     ALDLRAPRFRTADPDRPRAPRRRSRRSIDTGTTAAGDASAAAGSDAAAGGAAPLDPGE
                     RPEGPT"
     gene            5619..>6222
                     /gene="trmD"
                     /locus_tag="VIU37_10050"
     CDS             5619..>6222
                     /gene="trmD"
                     /locus_tag="VIU37_10050"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: protein motif:HMM:NF000648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEY6014342.1"
                     /translation="MTLEIDILTLFPAMLAGPLAESIPGRIQERGLATIRVRDLRDWG
                     MGRHRSVDDAPYGGGAGMILRPEPVAAAIDAVRRPDSTVILLDPAGEVFRHARAADLA
                     TRTHLVFLCPRYEGVDERIRSLVDLELSIGDYVLTGGELPALVVIDAVIRLLPGAIEE
                     ASTAEESFAAGLLEYPQYTRPPTFRGMDVPAILTSGDHGAV"
BASE COUNT          973 a         2201 c         2232 g          816 t
ORIGIN      
        1 tctggcgcac ggtcgtctcg gtgatgtcat agacggtcac cgccgagtcg gccacgagct
       61 gctgcatcac caggcagccg acggcgatga gcggcaggcc cgccggcgcg agcgggatga
      121 aggcgttgcc gatggcggcc aggaccatgg cgccgaccgc gaccggaccg atgccccagc
      181 gtcgcgtggc gcgggaggcg acgaccgccc cgacgaacga ggagaacccg ccgacgccgg
      241 cgacgacgcc gagcgtcgcc gcgttgagcc cgaggtcgtc gagcacgaac aggaaccagg
      301 tcgccccgaa cacgccccac aggagatgga gggccatctg ggcccccgca aacgcgcgca
      361 ggaccggatc atggatgacg aggcggaggc cctcgcggat ctcgtccatg acgggctcgc
      421 ggtcctccgg cggcggcggc ggcgcctcgt gccgccggat cgagccgagc agcagggcgg
      481 acgccacgaa ggacgccgcg tcaatggcga tcgcgaacgg cgcggtcagc cactggacga
      541 ggaaaccgct catgccgaag gccatgaact cggccgcgga gccgctggcg gccagcgcgc
      601 cgttggcatc gacgagtccg tcacgctcga cgatcgtggg caggtaggcg ttgctggccg
      661 agtcgaagaa ggtggtcagg acggccgcca ggccggcgac gagcaggagg tgccagtagg
      721 tcaggacgcc cagcgcgaac gcgaccggga tcgagaccag cagcgcggcc cgcccgaggt
      781 ccgcccagat gagcacgggc cgacgacgca gccggtcgac ccaggcaccg gcgaccagcc
      841 cgaccaccag cgtggcgccg aggtccaggc tgcgcaggat ggccacctcg aacgcacccg
      901 agcccagtac gaggatggcc gccagcggca aggccatccg cgtgatcagc gaaccgaaga
      961 tcgagacggt cgccgcggtc cacacgcgcg cgaaggccgc gttccgccag agccgggatc
     1021 ggaagggatt gcgcacgatc gcggagcata ccgtccgcac ccgcccggat ggccggcggg
     1081 tccgcgcgcc cgtcccgcgc tacaatccgc ctgccccggt gcgtcagaac ccgcgcacca
     1141 cccggcccgg tcgtgaccga gccggtccac cgcccgacgg agtcccacta cacgcatgtt
     1201 cgacaccctg agcgagcggc tgcgcaggac gcttggcaac ctgaccggcc gcggccggat
     1261 cagcgaggcc gacgtcgatg ccgccatgcg cgaggtccgc ctcgcgctgc tcgaggccga
     1321 cgtcaacttc aaggtcgtca aggacttcgt ggggcgcgtt cgcgaacggg ccgtcggaca
     1381 cgagatcctc gagtcgctgt cggcgggcca gcaggtcgtc aagatcgtca acgacgagct
     1441 cgtgcagctc ctgtccgccg gcgaccggac gttccacctg agcggcaacc cggccatcgt
     1501 ctcgctcgtc gggctgcagg gttcgggcaa gacgacatcg acggccaagc tcgcccggca
     1561 cgtcgtgaag ctcggccgcc ggccgctgct cgtggcggcc gatccgtacc ggccggccgc
     1621 ggcggaccag ctccagacgc tcggcaaggc gatcgacatc ccggtctacc gggcgcccgc
     1681 cggcacctcc gtggtcgaca tcgtgcgcgg cggcgtggag gcggcgcgcc ggcagacgcg
     1741 cgacgtggtc atcctcgaca ccgcgggccg cctgtcgctc gacgaagagc tcatggcaga
     1801 gatcaccgcg gtcgacgccg ccgtccggcc ggtcgagacg ctgctcgtgg tcgatgccat
     1861 gaccggccag gaggcggtcg gggtcgcgca ggcgttcgtg gccgcggtcc cggtgaccgg
     1921 gctgatcctg accaagatcg acggcgatgc ccgcggtggc gcggccctat cgatctcggc
     1981 ggtgacgggc gtgccggtga agttcctggg gaccggcgag aagaccgacg cgctcgagct
     2041 gttccacccc gatcggctgg ccggccggat cctggggatg ggcgacatcc tcacgctcgt
     2101 cgagcgggcc caggagcaca tcgaccagaa gcaggcggcc aagctcgagg agaagatccg
     2161 caaggccagc ttcacgctcg acgacatgct cgattcgatg cagcagatgc agaagatggg
     2221 accgatgggg caggtcatgt cgatgatccc ggggctgggc aacctcgccg gcgaggcgca
     2281 ggcggcggtc gaccggggcg atctgcggcg gaccgaggcg atcatccgcg cgatgacgcc
     2341 gagcgaacgg cgcgacccga cgatcctcaa cggctcccgg cggcggcgga tcgccgccgg
     2401 gtcgggcacc ggcctgcccg aggtgaaccg gctggtgaag cagttcggcg agatgcagaa
     2461 gctgatgaag caactctcgg gtggcggcaa gcgggccgcg gccctcggcg cattcatggg
     2521 ccggcgatga gccggagaag ggggaatcga tgaccgatct cgacccgacg accacgcaac
     2581 cggcgtcgag cccctacgag ccgaccgcag acgccgcacc ggcgacgctc gtccaggcgc
     2641 ccgagtcgac gctgcggcgc cgcccggtcc ggtggccggt cgcgatcgtc ctgatcgcgc
     2701 tggtcctggc cgtctccgcg ttcgtcggca tcctggtcac cgggcgcgca cccaacgcca
     2761 aggtcctcgg ctacgtgccg gacggcacga tcatgtacgg cgaagcgcgt ctcgacctcc
     2821 cgggcgacga acgcctcgcc ctcgcgtcct tcctgtcgaa gttcccggga ttcgccgacc
     2881 aggccgccat cgagagcaag ctcaccgagc tgatggaccg gttcgtcggc ggcgtcacga
     2941 acggcgatca ggcctacacc tccgacatcc agccctggtt cgacggtgag ctggcgttcg
     3001 cgctcgggcc gttgcccgac ccctcgaccc tgtccggtgg cgggagggcg gcgatggacc
     3061 aggcccgcta cctcgtcctc gtctcgatca aggacccggc cggcgtcacg gcctggttca
     3121 aggacgtcgc ggccaccagc accgtcgcga tgacggacga ggcctacaac ggcgccaacc
     3181 tcaccctgct gagcggcgac aacggcgcca agggcgccta tgccgtcctt gacggcaagg
     3241 tggcggtgtt cggcgacgtc gcctcggtca aggcggcggt cgatacccag ggaaagggtc
     3301 cgttcgccgg ccagcccagc cccaaggccg ccctcgacgc caccgactcg agccacctcg
     3361 ggttcatgta catcgacatg gccgccctgc tcgactggtc gagcaaggca tcgcaggccg
     3421 gcgggtcgtc gttcgcgccg gagctcgggc tctcctcgag cacgctccgc gggatgcttc
     3481 ccagttggga aggcgtggcg ctccgggtgg agggtgacgc cgtcgtcatc gaaggcgcgc
     3541 tcgaccgccc ggcgtcggcg gtcggcccga ccgagaaccg tgccacgagc ctgaccgacc
     3601 acgtgccggc caacgccctc gtggtcggcg tcggtcacga cgccggaaag acgctgatcg
     3661 ataccctcgg tgtctaccgg tcggagccgt ccatgaagtc gctgaccgac gggatcgacc
     3721 aggcggtcgg gctgctcggg ggcgtcgacg gcgcgttcgg ctggatgggc gacgccgggt
     3781 acgtggtcag ccagtcggac ggcgacatcg aaggcggcct gctgatcgcg accgccgacc
     3841 gggcggcggc cgaccgggtc ttcacgagcc tccggacgct cctggccgtc ggcggatccc
     3901 aggccgggat ctcgctcagc gacgagccgt acgcgggaac cacgatcacc accgtcgacc
     3961 tgggggacct cggagggctg ctcaatcagg ccggcgtcca gcccggccaa ctcggcatcg
     4021 gatcgggatt gccgacgggt cacctccggt tgacgtacgc ggtgaccgac cagatcgtcg
     4081 tgatcggatc gggtccgtcg ttcgtcaagc acatcctcga taccacgcct gccacgtcga
     4141 tcgcgtcgac cgaccgctac aagtcgctcg tcggcagggt cggcaacggg accggcgtca
     4201 cgttcgtcga catcacggcg atccgcggcc tgatcgagtc ggccatggcc ggcgccgatc
     4261 cgtccgcgac cgcgacctac gagcaggagg tcaagccgtt cctcgcgccg ttcgacgccc
     4321 tcatcgagtc cagctcggtg cagggcaacg tctcgaccgg caagttcatc atcacggtca
     4381 agtgacggcc cgggcatcca gcccgggccg gtagaggagg acagatcgcg aatggcagtt
     4441 cgaatccggc tcacgcgcgt cggcgcgacg aagcagccgt cctatcgggt cgtcgtcacc
     4501 gacggccgca gcgcccggga cggtcgctcc atcgagaccc tggggcacta caacccgcgc
     4561 accgaaccgg tcgaattcca ggtcgacgcc gacaaggcga aggcctggct ggccaagggc
     4621 gcccagccgt ccgacacggt gctgcggctc ttccgggcgg cgggcatcgt gcccgcggcg
     4681 aagtagggac gggacgatgg cagccaagga cctggtcgaa tacgtcgcca agtcgctcgt
     4741 cgacgatccc tcggccgtga ccgtcgacgt catcgacgag gacggcacga ccgtcatcga
     4801 gctccacgtc gcggaggacg acatgggcaa ggtgatcgga cgcaacggca gcgtcgccta
     4861 ggcgttgcgc acgttgctca aggtcaccgc ggctcgcgac ggcgagccgg tccagctcga
     4921 gatcctctga gcgacgacga gcggctcgtg gtcgccctcg tgcggggcgt ccatgggctg
     4981 catggcgcgg tccgcgtcga ggtcctgacc gaccgtccgg acgatcggtt cgtgcccggg
     5041 gccgtgctgt atcgcgaagg cgactcaagg ccgctgacgc tcgccggcgc ggaagccgtc
     5101 gcggacggac cgggctggcg cttgcggttc cgcgagatca cgtcgcgaga tggtgccgac
     5161 acgctccggg gcgcgtacct cgaggcggcg gttcgccccg acgaggacct cgcccggggc
     5221 gcgtactact ggcacgaggt gatcggcgtg gccgtgcgcg gcgttgacgg cgccgacctc
     5281 gggacggtgc aggacgtcta ccgcgtcgcc gagaacgagg tgttcatcgt gggcggcggg
     5341 ccgtacgggt cgttcgacct gcctgccgtg cgagcgttca tccgcatctt cgcgccccgc
     5401 cgaggcgaga tcgtcgtcga cgccgacgcg ctcgacctgc gtgcgccgcg cttccggacg
     5461 gctgatccgg atcggccgcg ggccccgcga cgacggtcgc gccgctccat cgacacaggc
     5521 acgaccgcgg cgggcgacgc ctccgcggcg gccggaagcg acgcggcggc gggcggcgcg
     5581 gcgccgctcg atcccggcga acgaccggaa ggcccgacat gacactcgag atcgacatcc
     5641 tcacgttgtt ccccgcgatg ctcgcgggcc ccctggccga gagcatcccc ggccgaatcc
     5701 aggagcgggg actggcgacg atccgcgtcc gggacctgcg tgactggggt atgggccggc
     5761 atcgctcggt cgacgacgcg ccatacggcg ggggagcggg gatgatcctc cgccccgagc
     5821 cggtcgccgc cgcgatcgac gccgtccggc ggcccgattc gacggtcatc ctgctcgatc
     5881 cggccgggga ggtctttcgt cacgcccgcg ccgcggatct cgcgacacga acccatctgg
     5941 tcttcctctg cccgcggtac gagggcgtcg acgaacggat ccgctccctg gtcgacctgg
     6001 agctgtcgat cggggactac gtgctcaccg gcggagagct tcctgcgctc gtggtcatcg
     6061 acgcggtgat ccggctgctc cccggggcga tcgaggaggc ctcgacggcg gaggagtcgt
     6121 tcgcggcggg gctgctcgag tacccccagt acacgcgccc gccgacgttc cggggcatgg
     6181 acgtcccggc gatcctgacg tccggggatc acggcgccgt cg
//
LOCUS       DATDDI010000694         1626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_514271, whole genome shotgun sequence.
ACCESSION   DATDDI010000694 DATDDI010000000
VERSION     DATDDI010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514271"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1626)
                     /locus_tag="VIU37_10055"
     CDS             complement(<1..>1626)
                     /locus_tag="VIU37_10055"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEY6014343.1"
                     /translation="LAPALLGIFGHYLFWPRHERDESTVDAGSLFARLAMLVSHRPAL
                     VTGALVLALALPITAIPSSRTNFDATSDLPKDSDARLGFELVTTHLGKGRIMPVNGAI
                     EIGADTDFLSPASLAQVRDATLAVAAIPGVQSVTSLISPTGDGTVPDGFVPSKQLEAM
                     ADGFAKSGGEAKDLLDPDVTSGLRSAADYVDALAAPFPAVASSSEYSTALADLRAAPD
                     LIVQLHDGALVSNQLRTIGGALGASTASGTDPSVALRALGNYLQELVAAYPDTVQLPA
                     FATVRASLQALQQAPTAAALADLSAGLAALATAFDVRPDAVLFPRSLPATPAASALQQ
                     QIASTFGRLPGDLRTLAQRYASLPDDLFVPTTLDGTGGSQAQAAAAAYVSQDGTVQRL
                     FIITDDDPYSVAAFDTVRRARVALAPFASGFGSGAHAVIGGATAELADTQTALNSDFL
                     RVAVITVLGVLIVLMLLLRAIVAPVYLVLTVLLSYLATIGFTSWLYQSVLGQPGVNFF
                     LPLMVFVLLVALGSDYNIFLMSRVREESEHRPIR"
BASE COUNT          264 a          534 c          630 g          198 t
ORIGIN      
        1 ccggatgggc cggtgctcgc tctcctcgcg gacccggctc atcaggaaga tgttgtagtc
       61 ggagccgaga gcgacgagca ggacgaagac catcaggggc aggaagaagt tgacccccgg
      121 ctggccgagc accgactggt agagccagga ggtgaacccg atcgtggcga ggtaggacag
      181 cagcaccgtc aacacgaggt acacgggcgc cacgatcgcg cggagcagga gcatcaggac
      241 gatgagcacc ccgagcaccg tgatgacggc cacgcgcagg aagtccgagt tgagcgcggt
      301 ctgcgtgtcg gccagctcgg ccgtggcacc gccgatcacc gcatgggcgc cgctgccgaa
      361 acccgacgcg aacggcgcca gggcgaccct cgcccggcgg acggtgtcga acgcggcgac
      421 cgagtagggg tcgtcgtcgg tgatgatgaa caaccgctgg acagtcccgt cctgggacac
      481 gtaggccgcg gccgccgcct gggcctggct gccgcccgta ccatcgagcg tggtcggcac
      541 gaacaggtcg tccggcagcg acgcgtagcg ctgggcgagc gtccgcaggt cacccgggag
      601 ccggccgaac gtcgaggcga tctgctgctg cagggccgag gccgccggcg tggccgggag
      661 gctcctggga aacagcaccg catccggtcg gacgtcgaac gccgtggcga gcgcggccag
      721 tccggcggac agatcggcga gggccgccgc cgtcggcgcc tgctggaggg cctgcaggct
      781 cgcgcgcacg gtcgcgaacg cgggcagttg caccgtatcg gggtaggccg cgaccagttc
      841 ctggaggtag ttgcccaggg cccggagcgc gacgctcgga tcggtcccgg acgcggtcga
      901 cgcccccagc gcaccgccga tcgttcgcag ctggttggag accagggcgc cgtcgtggag
      961 ctggacgatc aggtcgggcg ccgcgcgcag gtcggccagt gccgtcgagt actcgctcga
     1021 cgaggcgacc gccgggaacg gggcggccag cgcatccacg tagtcggccg ccgaccggag
     1081 cccggacgtc acgtccggat cgaggaggtc cttggcctcg ccgccggact tcgcgaaccc
     1141 gtcggccatc gcttcgagct gcttcgaggg gacgaagccg tccgggaccg taccgtcgcc
     1201 ggtcggggag atcaggctgg tcacgctctg gaccccgggg atggcggcca cggccagcgt
     1261 ggcgtcccga acctgtgcga gcgacgccgg ggagaggaag tcggtgtccg ccccgatctc
     1321 gatcgccccg ttgaccggca tgatccggcc cttgccgagg tgcgtcgtca ccagctcgaa
     1381 gcccaggcgg gcgtcggaat ccttcgggag gtcggaggtc gcgtcgaagt tcgtccgaga
     1441 cgacgggatg gccgtgatcg ggagcgcgag cgcgaggacg agagccccgg tgacgagcgc
     1501 cggacggtgg gacacgagca tggccaggcg cgcgaacagg ctgccggcgt cgaccgtgga
     1561 ttcgtcgcgc tcgtgccggg gccagaacag gtagtggccg aagatcccga gcagggcggg
     1621 cgcgag
//
LOCUS       DATDDI010000695         2816 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_742890, whole genome shotgun sequence.
ACCESSION   DATDDI010000695 DATDDI010000000
VERSION     DATDDI010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_742890"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..908)
                     /locus_tag="VIU37_10060"
     CDS             complement(114..908)
                     /locus_tag="VIU37_10060"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEY6014344.1"
                     /translation="MRIVVLVKPVPDPASAGERLGPDGRLDRAAAPAVVNGNDEYALE
                     AALKLTAAAGEDGEVTLLSMAPAAAPETLRKALAMGATRGVLVTDPALAGSDALSTAR
                     VLAAALRTLEYDLVLAGVDTSDGVGGTVAAAIAAHLRLPYLSYAARIEPDEAARTVRV
                     RRISATGYDLLESPMPALISCTQALGEPRYPSLKGIMGARSKEIVSRSLADLGLDAAT
                     VGGALAATALLDTRTPPARGETEVVRGTPADGAARIVELLAARRLI"
     gene            complement(933..2105)
                     /locus_tag="VIU37_10065"
     CDS             complement(933..2105)
                     /locus_tag="VIU37_10065"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6014345.1"
                     /translation="MDDPNATGTYRLTEDQALLREAVRVLADEQVAPRAAEIDRRGEF
                     PEDMRQLLAAQDILAIPFPEEHGGLGGDLLTLCLAVEQLSRACATTGLILAAHELGAL
                     PILVAGTPEQRARWVPRLASGETLICFALTEAEAGSDAAAARTRAIRDGDTYRISGSK
                     RFITHGSVADLVTVFAVTDPEAPRHRRLTCFVLEVPTPGFGVTRIEHKMGLRGSPTAE
                     LAFDDVRVPAANRIGEEGDGFGIAMRTFERSRPGIAAQAVGIAQGALEAATAYAADRR
                     QFGQRIGDFQMVGAMLADMDAATEAARQVLYKACVEIEAGSPDAGRWSAMCKLVAGDA
                     AMRVTTDAVQVLGGYGYIDDFPVERMMRDAKITQIYEGTQQIQRLVIARALLGKGS"
     gene            complement(2105..>2816)
                     /locus_tag="VIU37_10070"
     CDS             complement(2105..>2816)
                     /locus_tag="VIU37_10070"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEY6014346.1"
                     /translation="CLHAAGVEFAILGQEESCTGDPARRMGNDYVYQILAAGNVDTLN
                     RYGMGERTIVTACPHCFNTIGNEYGQLGGTFRIVHHSTYLAELVSSGRLATLPEDATS
                     SSGEHRPGSITVHDSCYLARYNNVVAAPRAVLGAAGVAITEMPKSGKDTFCCGAGGGR
                     MWMEETRGTRINAERSRQVLETGADTVATSCPFCMVMLSDGLAGTDGGARVATLDVSE
                     VLAARLAAVPAERRLPVL"
BASE COUNT          355 a         1051 c         1015 g          395 t
ORIGIN      
        1 gacgtcccgg ccggcggcgc ggcccagctc gcgggccagc gtcgcgatct cggcgctgag
       61 cctcgccagc ccgtggtccg gtcccggctc gccgacgacc cacagctggc ccatcagatc
      121 agcctccggg cggcgagcag ctcgacgatc cgagcggcgc catcggccgg ggttccgcgg
      181 acgacctcgg tctcgccgcg cgcgggaggc gtccgcgtgt cgagcagcgc cgtggcggcc
      241 agcgccccgc cgaccgtcgc ggcgtccagc ccgaggtccg ccagcgagcg gctcacgatc
      301 tccttcgagc gtgcgcccat gatccccttg agcgacgggt agcgcggctc gccgagcgcc
      361 tgggtgcacg agatcagggc cggcatcggc gactcgagca ggtcgtagcc ggtcgcgctg
      421 atccgccgga cgcggacggt gcgcgcggcc tcgtcgggct cgatccgggc ggcgtacgag
      481 aggtagggca gccgcaggtg cgcggcgatc gccgccgcga cggtgccgcc cacgccatcg
      541 gaggtgtcca cgccggccag cacgaggtcg tactcgagcg tccggagcgc ggcagccagc
      601 acgcgcgcag tcgacagggc gtcggatccg gccagtgcgg ggtcggtcac caggacgccc
      661 cgggtggcgc ccatcgccag ggccttgcgg agcgtctcgg gcgcggccgc cggggccatc
      721 gacaggagcg tgacctcgcc gtcctccccg gcagcggccg tcagcttgag ggcggcctcg
      781 agcgcgtact cgtcgttgcc gttgaccacc gccggtgcgg ccgcccggtc caggcggccg
      841 tccggcccga gccgctcacc ggccgacgcg ggatccggga ccggcttgac caggaccacg
      901 attcgcacga ggccgaactc ctccctgccc gatcagctgc ccttcccgag cagcgctcgc
      961 gcgatcacga gccgctggat ctgctgcgtc ccctcgtaga tctgggtgat cttcgcgtcg
     1021 cgcatcatgc gctccacggg gaagtcgtcg atgtagccat atccgcccag gacctggacc
     1081 gcgtcggtcg tgacccgcat ggcggcatcg ccggcgacga gtttacacat cgccgaccac
     1141 cgcccggcgt cgggcgagcc cgcctcgatc tcgacgcacg ccttgtagag cacctggcgc
     1201 gcggcctcgg tcgcggcgtc catgtcggcg agcatcgcgc cgaccatctg gaagtcgccg
     1261 atccgctggc cgaactggcg ccggtccgcc gcgtaggccg tcgccgcctc gagcgcgccc
     1321 tgcgcgatcc ccacggcctg cgcggcgatc cccgggcggc ttcgctcgaa tgtccgcatc
     1381 gcgatcccga aaccgtcgcc ttcctcgccg atccggttgg cggccggcac gcggacgtcg
     1441 tcgaacgcga gctcggccgt ggggctgcca cggagtccca tcttgtgctc gatccgggtg
     1501 accccgaagc cgggcgtcgg gacctcgagc acgaagcagg tcaggcgccg gtggcgcggc
     1561 gcctcggggt cggtcacggc gaacacggtc acgagatccg ccaccgagcc atgggtgatg
     1621 aaccgcttgg agccgctgat ccggtacgta tcgccgtcgc ggatcgcccg ggtccgcgcc
     1681 gccgcggcgt ccgagccggc ctcggcctcg gtcagggcga agcagatcag cgtctccccg
     1741 gacgccagcc gcggaaccca gcgcgcccgc tgctcgggtg ttccggcgac caggatcggc
     1801 agcgcgccga gctcgtgggc cgccaggatc agcccggtcg tggcgcaggc ccgactgagc
     1861 tgctcgacgg ccaggcacag ggtcaggaga tcgccgccga gtccgccgtg ctcctcgggg
     1921 aacgggatgg cgaggatgtc ctgggcggcc agcagctgcc gcatgtcttc cgggaactcc
     1981 ccgcggcgat cgatctccgc ggcgcgtggc gccacctgct cgtcggccag cacccggacc
     2041 gcttcgcgga gcagggcctg gtcctcggtc agccggtacg ttccggtcgc gttcgggtcg
     2101 tccatcacag gaccggcagc cggcgctcgg ccggcacggc ggcgagcctc gccgccagca
     2161 cttcgctgac gtcgagcgtg gcgacccggg cgccgccgtc cgtccccgcc aggccgtcgc
     2221 tgagcatgac catgcagaac gggcacgacg tggcgaccgt gtcggcgccg gtctcgagca
     2281 cctgccggct ccgctcggcg ttgatccggg tgccgcgcgt ctcctccatc cacatccgcc
     2341 cgccgccggc accgcagcag aacgtgtcct tgccggactt gggcatctcg gtgatcgcga
     2401 cgccggccgc gccgaggacc gcccgtggcg cggcgaccac gttgttgtag cgggccaggt
     2461 agcacgaatc gtggacggtg atgcttcccg gccggtgctc gccgctgctg ctcgtggcat
     2521 cctccggcag cgtcgcgagt ctcccggacg acacgagctc ggcgagatac gtgctgtggt
     2581 ggacgatccg gaacgtgccg ccgagctggc cgtactcgtt gccgatcgtg ttgaagcagt
     2641 gcgggcaggc ggtcacgatc gtccgctcgc ccatcccgta gcggttgagc gtgtcgacgt
     2701 tgcccgcggc gaggatctgg tacacgtagt cgttgcccat ccggcgggcc gggtcgccgg
     2761 tgcacgattc ctcctggccg aggatcgcga actcgacccc ggcggcgtgg aggcag
//
LOCUS       DATDDI010000696         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_368770, whole genome shotgun sequence.
ACCESSION   DATDDI010000696 DATDDI010000000
VERSION     DATDDI010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368770"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..865
                     /gene="raiA"
                     /locus_tag="VIU37_10075"
     CDS             275..865
                     /gene="raiA"
                     /locus_tag="VIU37_10075"
                     /inference="COORDINATES: protein motif:HMM:TIGR00741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEY6014347.1"
                     /translation="MKTIVKGKNVEVPERVRAYAERKLQRIERILDDRSDAVLELSNE
                     QHRSAADAHIAEVTLSIDGQMLHTRAAGISYQAAIDDVLDKVERRAVDHREKPRLRAR
                     PEEEKQILRRIADGTAAPVSERRIVKTKRFAIEPMFEEDAVSAMEELGHEFFVFVSAE
                     TEQVAILYKRDDGDYGLIEPVIGGNYTKGKSHRNGR"
     gene            984..1946
                     /locus_tag="VIU37_10080"
     CDS             984..1946
                     /locus_tag="VIU37_10080"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEY6014348.1"
                     /translation="MPPAERRLGAHLPLGLGMVKAVDRAREIGANAIQVFADNPTAWR
                     RRLEAPKELPAFQQRLAELSIEPVAIHASYLVNLAGTDEQFHAASIGVLASELRVAPG
                     FRARFVNVHVGSHRGAGVEAGTARLVDGLRLALAESDDGPDAAMIALENSAGGGFGLG
                     VDVAELAGIAEAAAARGIPDERLGFCLDAAHAWGAGIDLAHPDETDAFLEAFDERIGL
                     ERLVMVHLNDSKSERGSRLDRHEHVGAGQIGAAGLGHLLRHPRLAHAAYYLETPGMDE
                     GYDAINMARARDLLAGRPLADLPPEAMELRGSRARTAPAEDDEA"
BASE COUNT          298 a          735 c          742 g          246 t
ORIGIN      
        1 gtccggcgcc caggtggccg ggcagtggat cctcctggtc gacgacgtcg tcacgaccgg
       61 cgccaccctc gcgtcctgcg ccgcggccct cctgctcgcc ggagcgatcg gcgtctccgc
      121 gatcacggtc gcgcgtgaac gatgaccggc cggacgccgg acgcggggcg cggggcgcgg
      181 ggcgcggggc gcggggcgga gtccgccctc gccggccccg ggacacggcg cgactatact
      241 gacgatccga ggaccggcga tcgagaggtg acgcgtgaag acgatcgtca agggcaagaa
      301 cgtcgaagtc cccgagcggg tgagagcgta cgcggagcgc aagctccagc ggatcgagcg
      361 catcctcgat gaccgctcag acgcggtgct ggagctctcg aacgagcagc accgcagcgc
      421 cgccgacgcg cacatcgccg aggtcaccct gagcatcgac ggacagatgc tccacacgcg
      481 cgcggccggc atcagctacc aggccgcgat cgacgacgtg ctcgacaagg tcgagcggcg
      541 cgccgtcgac caccgcgaga agccacggct ccgggcgcgg cccgaggagg agaagcagat
      601 cctccgccgc atcgccgacg gcacggccgc gccggtgagc gaacgccgga tcgtgaagac
      661 gaagcggttc gccatcgagc cgatgttcga agaggacgcg gtcagcgcca tggaggagct
      721 cggtcacgag ttcttcgtct tcgtcagcgc cgagaccgaa caggtcgcga tcctctacaa
      781 gcgcgacgac ggcgactacg gcctgatcga gccggtgatc ggcggcaact acacgaaggg
      841 caagagccac cggaacggtc gctgaccggg cgccggcgtc actccgggtc ctcggggccg
      901 gtcccggccg gcccctcgtc gcgcgatcgt cggcgcggcg cgtcgcctcg cagcggcgcg
      961 cgccgccgac tagcatgcag cgcatgcctc ccgcggaacg ccgtctcggt gcccacctgc
     1021 ccctcgggct cgggatggtc aaggccgtcg atcgtgcccg cgagatcggc gcgaacgcga
     1081 tccaggtctt cgccgacaac ccgacggcct ggcgacgccg gctcgaggcg cccaaggagt
     1141 tgccggcgtt ccagcagcgc ctggccgagc tctcgatcga accggtcgcg atccatgcgt
     1201 cgtacctggt caacctggcg ggaaccgacg agcagttcca tgcggcatcg atcggggtcc
     1261 tggccagcga gcttcgggtg gcgcccggct ttcgtgcccg gttcgtcaac gtccacgtcg
     1321 ggtcgcatcg cggggccggc gtggaggcgg gcaccgcgcg gctggtcgac gggctgcgcc
     1381 tcgcgctcgc cgaatcggac gacggcccgg acgcggccat gatcgcgctc gagaactcgg
     1441 ccggcggcgg gttcgggctc ggcgtcgacg tcgccgagct ggccgggatc gccgaggccg
     1501 cggccgccag gggcatcccg gacgaacggc tcggcttctg cctcgacgcg gcgcatgcct
     1561 ggggcgccgg catcgacctc gcccaccccg acgagaccga cgcgttcctc gaggcgttcg
     1621 acgagcggat cggcctcgaa cggctggtga tggtccacct caacgactcg aagtccgagc
     1681 gcggctcgcg cctcgaccgc cacgagcacg tcggcgcggg gcagatcggg gcggccgggc
     1741 tggggcacct gctccgccat ccgaggctgg cgcatgccgc ctactacctc gagactcccg
     1801 ggatggacga gggctacgac gcgatcaaca tggcccgggc gcgcgacctg ctggccggcc
     1861 gcccgctcgc cgacctgcca cccgaggcga tggagctgcg cggcagccgg gcacggaccg
     1921 cgcccgcgga ggacgacgag gcgtgatcgc cgcctggcga cggcgagagg tcctcgcgct
     1981 gcccgggctg ctgttgctgg ccgcggccct ccggctcccc g
//
LOCUS       DATDDI010000697         2133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_451463, whole genome shotgun sequence.
ACCESSION   DATDDI010000697 DATDDI010000000
VERSION     DATDDI010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451463"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VIU37_10085"
     CDS             <1..223
                     /locus_tag="VIU37_10085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014349.1"
                     /translation="VVPAADFLGLPGVSDVVADERVLRMRVTGSMAPVVQAAARHDLI
                     DFSSREPSLEDTFLAQYGREAVEVNNHGH"
     gene            213..1904
                     /locus_tag="VIU37_10090"
     CDS             213..1904
                     /locus_tag="VIU37_10090"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6014350.1"
                     /translation="MAIEIGRRPLPAAAPHVSLFRRVYGLGSVFGKTIRDSRLGLFTI
                     AILLGGIILAGGATMANTYGTLETRRELATLSSELPPVLRGLYGDPVRVDTLGGFISW
                     HYGAYFALLAGLWSILALSSTLAGEARRGSLEFALATPLTRRVVAIEKVAAHLVAVII
                     ATALVSLAAWVTGAAFAKLPGDGIAAQAAVEFGVGLGAKALIAGSIAFALAGFIGRGA
                     AAGLAGAIMVAGYVLNGYRAVVPAFDGPASLTWFAWTRNHLPLAGSTDWAAVALVLVV
                     SAVLLAIGIESFARRDVGATAKIRTPAIPQALLGVRGPVSRSFGELLPSALAWGIGLG
                     LYGFVMAVSSRVFAEELTNSPGLLEAVRNMVPGVDMTTTAGFLQLAFVDLGLVLVALA
                     AATFVAGRASDETGGRLELLLSTPLTRARWTIASAIGVWLAIVVTDALLAASIGVGVG
                     LAGSDPVQPLIGSVALALYGAAMAGIGLAVGGLTRASFAAPAVLVVAIGSSLVDILGD
                     ALGLPDWFRQLALSSHMGEPMVGTWDPAGVAACLVLAVGGLGLGLWGMRRRDVSP"
BASE COUNT          225 a          796 c          772 g          340 t
ORIGIN      
        1 cgtggtgccc gcggccgatt tcctcggcct gccgggcgtc agcgacgtcg tcgccgacga
       61 gcgcgtgttg cggatgcggg tgaccggttc gatggcgccg gtggtccagg cggccgcccg
      121 ccacgacctg atcgacttct cgagccgcga gccgagcctc gaggacacct tcctggccca
      181 gtacggccgc gaggccgtcg aggtgaacaa ccatggccat tgagatcggg cgccggccgc
      241 ttcccgcggc cgcgccacat gtctcgctgt tccggcgcgt ctacggcctg ggcagcgtct
      301 tcggcaagac gatccgggat tcgcgcctcg gcctgttcac catcgcgatc ctgctcgggg
      361 ggatcatcct cgccggcggc gccacgatgg ccaacaccta cgggaccctc gagacccgcc
      421 gcgagctcgc cacgctgtcg tcggagctgc cgccggtgct ccgcggactg tacggcgacc
      481 ccgtccgcgt ggacacgctc ggcgggttca tctcctggca ctacggggcg tacttcgcgc
      541 tcctcgccgg cctctggtcg atcctggccc tgtcatcgac gctggcgggc gaggcgcgcc
      601 gcggcagcct cgagttcgcg ctcgcgacgc cgctgacgcg gcgggtcgtg gcgatcgaga
      661 aggtcgccgc acacctcgtc gccgtgatca tcgcgacggc gctcgtctcc ctcgcggcct
      721 gggtgaccgg cgccgcgttc gccaagctgc cgggtgacgg gatcgcggcc caggcggccg
      781 tcgagttcgg ggtcggcctc ggggcgaagg ccctcatcgc gggctcgatc gccttcgcgc
      841 tggccggctt catcggacgc ggcgcggccg ccgggctggc cggcgcgatc atggtcgcgg
      901 gctacgtcct gaacggctat cgcgccgtgg tgccggcctt cgacgggccg gcgagcctga
      961 cctggttcgc gtggacgcgc aaccacctgc ccctcgccgg atcgaccgac tgggccgccg
     1021 tggcgctcgt cctcgtcgtc tcggccgtcc tgctcgccat cggcatcgaa tccttcgccc
     1081 ggcgcgacgt cggggcaacc gcgaagatcc ggacgccggc catcccgcag gccctgctcg
     1141 gggttcgcgg gccggtcagc cgctccttcg gcgagctcct gccgtcggcc ctcgcgtggg
     1201 gaatcgggct gggcctctac gggttcgtga tggctgtctc gagccgggtg ttcgccgagg
     1261 agctgacgaa ctcgcccggg ctgctggagg ccgtgcgcaa catggtcccc ggtgtcgaca
     1321 tgaccacgac cgccgggttc ctccagctcg cgttcgtcga cctcggcctg gtcctcgtgg
     1381 cgctcgccgc ggcgacgttc gtcgccggtc gggcgtccga cgaaaccggg ggacggctcg
     1441 agctgctcct cagcacgccg ctcacgcgcg cccgctggac gatcgcgagc gcgatcggcg
     1501 tctggctcgc gatcgtcgtg accgacgcgc tgctcgcggc atcgatcggc gtcggtgtcg
     1561 gcctggccgg cagcgatccg gtccagccgc tgatcggatc ggtggccctg gcgctctacg
     1621 gggcggcgat ggccgggatc ggcctggccg tcggcggcct cacccgggca tcgttcgccg
     1681 cgcccgcggt cctggtcgtc gccatcgggt cgtcgctggt ggacatcctc ggcgacgccc
     1741 tggggctgcc cgactggttc cgccagctgg cgctcagctc gcacatgggc gagccgatgg
     1801 tcggcacgtg ggacccggcg ggcgtggccg cctgcctggt cctggcggtc ggcggcctcg
     1861 ggctgggcct gtggggcatg cgtcgccgcg acgtgagccc ttgaccgtgg cccggccgca
     1921 gcccagtctc atggccgagg cgcccggcat gccggcgcct cggccgccac gggaggatct
     1981 cgccacggtg acgacgacag cggaccagcg gcccggcgac acgcaacgct ggctcctcct
     2041 catctaccgg atccaggccg gttcctccag ccgtcgcacg tacgtctggc ggcagctccg
     2101 ccagctgggc gcggtctacc tccagcaggc ggt
//
LOCUS       DATDDI010000698         3962 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_493581, whole genome shotgun sequence.
ACCESSION   DATDDI010000698 DATDDI010000000
VERSION     DATDDI010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493581"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..465)
                     /locus_tag="VIU37_10095"
     CDS             complement(<1..465)
                     /locus_tag="VIU37_10095"
                     /inference="COORDINATES: protein motif:HMM:NF014827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEY6014351.1"
                     /translation="MTTENMAATINAWEVAQRQFDLAAERLGLDDGMRRVLREPRREL
                     TVHFPVHMDDGSTKVFTGFRVQHNLGRGPAKGGIRYHQDVSIDEVKALAMWMTWKCAV
                     VGIPYGGGKGGVAVDPKKLSKRELEGLTRRFATELSVLIGPERDIPAPDVNTN"
     gene            complement(728..1579)
                     /locus_tag="VIU37_10100"
     CDS             complement(728..1579)
                     /locus_tag="VIU37_10100"
                     /inference="COORDINATES: protein motif:HMM:NF014679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005504 - fatty acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEY6014352.1"
                     /translation="MTPVAIFTDSASDLDPAFAATHGIGVIPLVVNFGSETFKAGEEL
                     SAEAFWERMVAPDAPFPTTAASSPGEFKDAYEAAFADGAEGIVSIHVAGTLSGAIKSA
                     QIARGMLPDREIHVIDSLGASMAEGILAIMAVELAAQGRSAAEIAEVLEARAPDMVMY
                     VALESLEYLRKGGRISGAQAAIGTLLSVKPIIRVEHGVIEQGDRVRTRAKARERLIEM
                     ICERPVERLAILYTAGADAPSFRDEVLARLGPGLDPADVQIALVGPSVGPHLGPGCVG
                     AVAMYRP"
     gene            1669..2955
                     /locus_tag="VIU37_10105"
     CDS             1669..2955
                     /locus_tag="VIU37_10105"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014353.1"
                     /translation="MDRSLQAVLAGTFTLRFSTGLTGAMYSLYLADLPKHGGAEVGAE
                     IVGLFAALFFVSELALSPLFGILSDRLGHHRVMLYGPAFGAVAAVLTGLTVSLPILGA
                     TRLLEGASTAASVPSILGFIALATAGNEILRGKAAARFEGATLAGLGVGFIVAPKLFE
                     AIGPAAFMLNAVVYGVSFLIYRLGVVDPEGERRALASSHVGIGRYLHLIRSAHVLLLA
                     PTWIAVNASIGLWFSQSLFQFSKANPHFPEQQLMRGFDANQITIAAIVIAIVFGVGLL
                     YWGNRFRNMRRTTIILYGIVGGGVLVAAGLVVNHSGGLPIVVPIAGAVLAGGGLFVLA
                     GATPAALGLLADISERFPADRGAIMGLYSVFLGIGQIIGSLIGGFAASWHGIDGMFVA
                     TMCLLGVALLPLARLRAQEHQIDGSGSATVAGETGG"
     gene            2952..>3962
                     /locus_tag="VIU37_10110"
     CDS             2952..>3962
                     /locus_tag="VIU37_10110"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY6014354.1"
                     /translation="MTDPRTWSPVPLARGVRGAVVAPHHLATAAGSGVLQAGGTAVDA
                     AIAANAVLGVVMPNGCGIGGDAFWLIWDQASGRQLALNGSGRAPAGASAEALRAAGMR
                     TIPLRGPHAITVPGAVRSWGEAHRRFGRLPRETILAPAIELARAGFPAWEGFIEAVEA
                     TVPIVMATLGPGAGFFPVYRPAGRAWRPGERVRLPALAATLEALASDGFDAFYDGDLG
                     ERQSRALSAIGSPVRAADLAAHTADWGEPIALDYRGVRVTTHPPNSSGVVALEILSIL
                     REFAPPPAAAFGPEGTTDPAWIHLGIEATKLAMADRDRHLTDPAFRDVPVGRLLDPGH
                     GAE"
BASE COUNT          507 a         1426 c         1414 g          615 t
ORIGIN      
        1 gttggtgttc acgtcgggcg ccgggatgtc acgctcgggg ccgatgagca cggacagctc
       61 ggtcgcgaac cggcgggtca ggccctcgag ctcgcgcttg gagagcttct tggggtcgac
      121 cgcgacgcca cccttgccgc cgccgtacgg gatcccgacg accgcgcact tccaggtcat
      181 ccacatcgcg agggccttga cctcgtcgat gctcacgtcc tggtgatacc ggatgccgcc
      241 cttggccggg ccgcggccga ggttgtgctg gacacggaag ccggtgaaga ccttggtgga
      301 accgtcgtcc atgtggaccg ggaagtgaac ggtcagctcg cgtcggggct cgcgcaggac
      361 gcggcgcatg ccgtcgtcca ggccgagccg ttcagctgcc aggtcgaact ggcgctgggc
      421 gacttcccac gcgttgatcg tcgccgccat gttctcggtg gtcatccgcg agagttcctc
      481 tctgtcgggc agttacgcac cgccctgtcg ctgcgagtcg tctcccggac gaccccacgg
      541 ggcgccccgc caagcacgtg gaaaccccgg ctgggaccaa cgcttccggc gggcgcgcga
      601 ctcatctgtg gcccgagtat agccgtgaga ccccgtcggg cacctgccaa atggtaccgg
      661 ccggcaatcc gaacgcaacc tgttcgcaac cctggagggg gccgaacggc accccgggga
      721 gcgggactca ggggcggtac atcgcgaccg cgccgacgca tcccggaccg aggtgcggcc
      781 ccaccgacgg acccaccagc gcgatctgga catcggcggg atcgagtccc gggcccagcc
      841 gggccaggac ctcgtcgcgg aacgacggcg cgtccgcgcc cgccgtgtac aggatggcca
      901 gccgctcgac gggacgctcg cagatcatct cgatgagccg ctcgcgggcc ttggcccgcg
      961 tccggacgcg atcgccctgt tcgatcacgc cgtgctccac gcggatgatc ggcttgaccg
     1021 acagcagggt gccgatcgcc gcctgcgcac cgctgatccg gccgcccttg cgcaggtact
     1081 cgagcgattc gagcgccacg tacatgacca tgtccggggc cctcgcctcg aggacctcgg
     1141 cgatctcggc ggccgaccgt ccctgcgccg cgagctccac ggccatgatc gccaggatgc
     1201 cctcggccat cgaggcgccg agcgaatcga tgacgtggat ctcgcgatcg ggcagcatgc
     1261 cgcgggcgat ctgggcactc ttgatcgccc cggacagcgt gccggccacg tggatcgaca
     1321 cgatcccctc ggcaccgtcg gcgaaggccg cctcgtaggc gtccttgaac tcgccgggcg
     1381 acgacgcggc ggtcgtgggg aacggcgcat ccggcgcgac catccgctcc cagaacgcct
     1441 cggcggagag ctcctcgccg gccttgaacg tctcggaccc gaagttcacc acgagcggga
     1501 tgacgccgat gccgtgtgtc gccgcgaagg ccgggtccag gtcggacgcg gaatcggtga
     1561 agatcgcgac gggggtcaag ggctcctcct cacgactgga ccgcgaacgt tgcgggcatg
     1621 atacgggccg ggtccagcgc ggtgatcgac ccgctacgct tgatggcgat ggatcgatcg
     1681 ctgcaggccg tgctggccgg gaccttcacc ctccggttca gcaccggcct gaccggggcg
     1741 atgtacagcc tctacctggc cgaccttccg aagcacggtg gggccgaggt cggggcggag
     1801 atcgtcgggt tgttcgcggc cctgttcttc gtgtccgagc tcgcgctctc gccgctgttc
     1861 gggatcctgt ccgatcgcct cggtcaccat cgggtgatgc tctacggccc ggccttcggg
     1921 gcggttgccg cggtcctgac cgggctgacg gtcagcctcc cgatcctcgg ggctacgcga
     1981 ctgctggagg gtgcctcgac ggccgccagc gtcccatcga tcctcgggtt catcgccctc
     2041 gcgacggccg gcaacgagat cctgcgcgga aaggcggcgg cgcgcttcga aggcgccacg
     2101 ctggccgggc tcggggtcgg gttcatcgtc gccccgaagc tgttcgaggc gatcggcccg
     2161 gctgccttca tgctgaacgc cgtcgtctac ggggtgtcgt tcctgatcta ccgcctcggt
     2221 gtcgtggatc ccgagggcga gcgccgggcg ctggcgtcgt cgcacgtggg gatcggacgc
     2281 tacctccacc tcatccggtc ggcccacgtc ctgctcctgg ccccgacctg gatcgcggtc
     2341 aacgcctcga tcggcctgtg gttcagccag tcgctgttcc agttctcgaa ggccaacccg
     2401 cacttccccg agcagcagct gatgcgcggc ttcgacgcca accagatcac gatcgcggcg
     2461 atcgtcatcg cgatcgtctt cggggtcggg ctgctgtact ggggcaaccg gttccggaac
     2521 atgcggcgga cgacgatcat cctgtacggg atcgtgggcg gcggcgtcct ggtggcggcc
     2581 ggcctcgtgg tcaaccactc cggtgggctg ccgatcgtgg tcccgatcgc cggagccgtc
     2641 cttgccggcg gcgggctgtt cgtgctggcc ggcgcgaccc cggcggccct cggactgctc
     2701 gccgacatct cggaacgctt cccggcggac cgcggcgcga tcatgggcct ctactcggtg
     2761 ttcctcggga tcggccagat catcggcagc ctgatcgggg ggttcgccgc gtcgtggcac
     2821 gggatcgacg ggatgttcgt ggcgacgatg tgcctgctcg gcgtcgccct cctgccgctg
     2881 gcccggctcc gcgcgcagga gcaccagatc gacggttccg gatccgcaac tgtcgccggc
     2941 gagacgggcg ggtgaccgat ccgcgcacct ggtcgccggt gcccctggca cgcggtgtcc
     3001 gcggcgcggt cgtggcgccg catcacctcg cgacggccgc cggatccggc gtgctgcagg
     3061 ctggaggcac ggccgtggac gcggccatcg cggccaatgc cgtgctcggc gtggtgatgc
     3121 ccaacggctg cgggatcggg ggcgacgcgt tctggctgat ctgggaccag gcctcgggcc
     3181 gccagctggc gctcaacggc tcgggccggg cgccggccgg ggcaagcgcc gaggcgctgc
     3241 gggccgccgg gatgcggacg atcccgctgc gcggtccgca cgcgatcacc gtgcccggcg
     3301 cggttcgctc gtggggcgag gcgcaccggc ggttcggccg cctgccgcgc gagacgatcc
     3361 tggccccggc gatcgagctt gcgcgcgcgg gcttcccggc ctgggagggg ttcatcgagg
     3421 ccgtcgaggc gaccgtgccc atcgtcatgg ccacgctcgg cccgggtgcc gggttcttcc
     3481 cggtctaccg tcccgccggc cgcgcctggc gcccgggcga gcgggtccgc ctgcccgccc
     3541 tggcggcgac gctcgaggcg ctcgcgagcg acgggttcga cgcgttctac gacggcgacc
     3601 tgggcgaacg ccagtcgcgt gccctgtccg cgatcggctc gccggtccgg gccgccgacc
     3661 tggccgccca taccgccgac tggggtgagc cgatcgccct cgactaccgg ggcgtgcggg
     3721 tcacgacgca cccgccgaac agctcgggcg tggtcgccct cgagatcctg tcgatcctgc
     3781 gcgagttcgc gccgccgccg gcggccgcat tcggaccgga gggcacgacc gatccggcgt
     3841 ggatccacct cggcatcgag gccaccaagc tggccatggc cgaccgcgac cgccacctga
     3901 ccgatccggc cttccgcgac gtgccggtcg ggcgactcct cgatccgggg catggcgccg
     3961 ag
//
LOCUS       DATDDI010000699         2082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_264899, whole genome shotgun sequence.
ACCESSION   DATDDI010000699 DATDDI010000000
VERSION     DATDDI010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264899"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            188..382
                     /locus_tag="VIU37_10115"
     CDS             188..382
                     /locus_tag="VIU37_10115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014355.1"
                     /translation="MSKRHQASRRKTYGRRQHEVRERQDRWQHSEGFDFELGDWRSAT
                     PADPFAFLDPRSPRVRYALD"
     gene            387..767
                     /locus_tag="VIU37_10120"
     CDS             387..767
                     /locus_tag="VIU37_10120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014356.1"
                     /translation="MAVYEGARARTILLPRRPRIAETPTLGRRRVRGAVRSGQRTNRL
                     GLILGSIVVAFMLAFFSLAQQVRVSATGLDIGRLALDRQRIDAQAEDVRSDLNRLGRE
                     PAIRKMAIDDGLGQLAEPIVLPAR"
     gene            783..>2082
                     /locus_tag="VIU37_10125"
     CDS             783..>2082
                     /locus_tag="VIU37_10125"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEY6014357.1"
                     /translation="MPGRTDSRARLLLLLCFFVVGALALGARAAYWQVLDHDRLVADA
                     ADQTTVTIDTPSQRGDIFDRTGTVVLATTVQRERLVAAPDQLTPDQRRATVAELTRLL
                     GLDDAAAIALRDKLASKSRYLVIQHGIDRQLGDRIQAAIDNHQVYGLALEQEPERVYP
                     QPGGGPGTTLAAHLLGFVNRDGVGQYGVEQQYQATLGGSPRIVVAQRDPAGRPMLESA
                     DVTSAGAPGTDLRLTIDAGLQLSVEQELLAAWIADKAKRVSAVVMDPYTGEVYAMASY
                     PSFDANDFKAIASTDPSRFINPLVASVYEPGSVFKMMTAAAALEAGTVTPSTRIKDTG
                     TLKLDGGRTKIDDADRKGMGWMTFQDGVAYSRNVVAAKVALGLGDTTRESSAALYDTW
                     RQLGYGAPTGIDVAGEVQGIVRDPAITPWREIDLANGAFGQ"
BASE COUNT          314 a          756 c          733 g          279 t
ORIGIN      
        1 gcgtctgccc gcccgaggtg cccgtctgcg tctgcggacg gaacccgcgc ctccgtctcg
       61 tcacccgccg gtcggtcacg ccgggcaccg ccgagatcgt cgccaatccc cgagccagga
      121 gcgcccgcct gcgggcggcc gagcggctcg ccgcctagcc acgtcgtcac ggaagggagg
      181 agtctcgatg agcaagcgcc accaggccag ccgccgcaag acttatggcc gtcgccagca
      241 cgaagtgcgc gaacgccagg accgctggca gcacagcgaa ggcttcgact tcgagctcgg
      301 cgattggcgc tccgccacac cggccgaccc cttcgccttc ctcgatccgc ggagtccacg
      361 cgtccgatac gcgctggact gattcgatgg ccgtctacga gggcgcgcga gcgcgcacca
      421 tcctgctgcc gcgccgcccg cggatcgccg agactccgac gctcggtcgg cgccgcgtgc
      481 gcggggcggt gcgttccggg cagcggacca accggctggg actgatcctc gggtcgatcg
      541 tcgtcgcctt catgctcgcg ttcttctcgc tggcgcagca ggtgcgggtg tcggcgaccg
      601 ggctcgacat cggccgtctc gccctggacc ggcagcggat cgacgcgcag gccgaggacg
      661 ttcgctccga cctcaaccgg ctgggccgcg aaccggcgat ccgcaagatg gccatcgacg
      721 acggactcgg ccagctcgcc gaaccgatcg tcctgccggc ccgctaggcg atcgaccgac
      781 cgatgccggg ccggaccgat tcgcgcgcgc gcctgctcct cctcctgtgc ttcttcgtgg
      841 tgggggcgct ggcgctcggc gcccgggccg cgtattggca ggtcctggat cacgaccggc
      901 tcgtcgccga cgcggcggac cagacgacgg tcaccatcga cacgccgagc cagcgcggcg
      961 acatctttga ccggaccggt acggtcgtcc tggccacgac cgtacagcgc gagcgcctcg
     1021 tcgcggcgcc ggaccaattg acgccagacc agcgacgggc gaccgtcgcg gagctgaccc
     1081 ggttgctcgg cctggacgac gcggcggcca tcgcgctgcg tgacaagctg gcctcgaaga
     1141 gccgctacct ggtgatccag cacgggatcg accggcagct cggagaccgg atccaggcgg
     1201 cgatcgacaa ccaccaagtg tacgggctcg cgctcgagca ggaaccggag cgggtctacc
     1261 cgcagccggg tggcggtccg ggcacgacgc tcgccgcgca cctgctgggg ttcgtcaacc
     1321 gcgacggcgt cggccagtac ggcgtcgagc agcagtacca ggccaccctg ggcggatcgc
     1381 cccggatcgt cgtcgcccag cgcgatccgg ccggccggcc gatgctcgag agcgccgacg
     1441 tgacgagcgc gggcgcgccc gggacggacc ttcgcctgac catcgacgcc ggactgcagc
     1501 tgagcgtcga gcaggagctc ctggcggcct ggatcgccga caaggccaag cgggtctcgg
     1561 cggtggtgat ggacccgtac accggcgagg tgtacgcgat ggccagctac ccgtcgttcg
     1621 acgccaacga cttcaaggcg atcgcctcga ccgatccatc gcgcttcatc aacccgctcg
     1681 tcgcgagcgt ctacgagccc ggctccgtgt tcaagatgat gacggccgcg gcggcgctcg
     1741 aggccggcac ggtcaccccc tccacgcgga tcaaggacac cggcacgctc aagctcgacg
     1801 gcggccggac gaagatcgac gatgccgacc gcaaggggat gggctggatg acgttccagg
     1861 acggcgtcgc gtactcgcgc aacgtggtcg cggccaaggt cgcgctcggg ctgggcgaca
     1921 ccacccggga atcgtcggcc gcgctgtacg acacgtggcg ccagttgggc tatggcgcgc
     1981 cgaccgggat cgacgtggcc ggcgaggtgc aggggatcgt ccgcgatccg gcgatcacgc
     2041 catggcgcga gatcgacctt gccaacgggg cgttcgggca gg
//
LOCUS       DATDDI010000700         1573 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_264906, whole genome shotgun sequence.
ACCESSION   DATDDI010000700 DATDDI010000000
VERSION     DATDDI010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264906"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1082)
                     /locus_tag="VIU37_10130"
     CDS             complement(<1..1082)
                     /locus_tag="VIU37_10130"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014358.1"
                     /translation="MRGSHSAPTPRDPRGRRPLVIGCGALARELVALTRAAGFPEVDL
                     TCLPATLHNRPEQIPAAVRASTPAFWSISMLLNVLTNSMINVVFAMGVLIVIISGGID
                     VSFMAIGIFAGYSVIILTNATGIGAGHAVVGFAIASGIGLGLGTLNAIAVAGLRIPTL
                     IATLGTRGIFTGAMLVWIGSRVIPNYPDGLNGLSTNYLFTAHSASGDTRLSVMIVPAV
                     LICILVGLLLRFTMIGRSIYAIGGDEESARRAGIPVAAIKVFIYLLVGLLAGFAGMMH
                     VTQVRLANPYELVGGELDVIAAVVLGGASIFGGSGSVTGTALGVVLISLVQNSLILLG
                     VPSTWQRLSVGFLLLVGIAAQALTSS"
     gene            complement(1066..>1573)
                     /locus_tag="VIU37_10135"
     CDS             complement(1066..>1573)
                     /locus_tag="VIU37_10135"
                     /inference="COORDINATES: protein motif:HMM:NF014375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="corrinoid protein"
                     /protein_id="HEY6014359.1"
                     /translation="IDFRDGILFVPEVLLAANAMKAGMAILRPLLAEPGAKPIGRVVI
                     GTVKGDIHDIGKNLVAMMLEGAGFEVHDLGINTDADKFMAALEEHKPDILGMSALLTT
                     TMPYMKVVIQTLKDRGIRDDYIVLVGGAPLNEEFGKAVGADAYCRDAAVASETARRLV
                     NERRARVA"
BASE COUNT          267 a          514 c          570 g          222 t
ORIGIN      
        1 cacgacgacg tgagcgcctg cgcggcgatc ccgacgagga gcaggaagcc gaccgagagc
       61 cgctgccacg tgctcggcac tccgagcagg atcagcgagt tctggacgag cgagatgagc
      121 acgacgccga gcgcggttcc ggtcacggag ccgctgccgc cgaagatcga cgcaccgccg
      181 aggacgacgg ccgcgatcac gtcgagctct ccgccgacga gctcgtacgg gttcgcgagc
      241 cgcacctgcg tgacgtgcat catcccggcg aagccggcga gcagcccgac gagcaggtag
      301 atgaagacct tgatcgcggc caccgggatg ccggcgcgcc gcgcggactc ctcgtcgccg
      361 ccgatcgcgt agatcgagcg gccgatcatc gtgaagcgga gcagcagacc gaccaggatg
      421 cagatcagga ccgcagggac gatcatcacg ctcagccggg tgtcgcccga ggcgctgtgc
      481 gcggtgaaga ggtagttcgt cgagaggccg ttcaggccgt ccgggtagtt cgggatcacc
      541 ctcgagccga tccagaccag catcgcgccg gtgaagatgc cgcgtgtgcc gagggttgcg
      601 atcagggtcg ggatcctcag cccggcgacg gcgatcgcgt tcagcgtccc gaggccgagg
      661 ccgatccccg aggcgatcgc gaagccgacg acggcatggc cggcgccgat cccggtcgcg
      721 ttcgtgagga tgatgacgct gtacccggcg aagatcccga tcgccatgaa cgagacgtcg
      781 atcccgcccg agatgatcac gatcaggacg cccatcgcga agacgacgtt gatcatcgag
      841 ttcgtgagca cgttcagcaa catcgagatg ctccagaacg cgggcgtcga ggcccggacg
      901 gccgccggga tctgctcggg ccggttgtgg agcgtcgcgg gaaggcaggt gaggtcgacc
      961 tcggggaagc cggcggcacg agtcagcgcg acgagctcgc gggcgagcgc gccacagccg
     1021 atgacgaggg gccgtcggcc tcggggatcc cgcggagtcg gggcgctatg cgacccgcgc
     1081 acgacgttcg ttgacgaggc gccgggccgt ctccgacgcg acggccgcgt cgcggcagta
     1141 ggcgtccgcc ccgacggcct tgccgaactc ctcgttgagc ggcgcgccgc cgacgaggac
     1201 gatgtagtcg tcgcggatgc cccggtcctt gagggtctgg atgacgacct tcatgtacgg
     1261 catcgtcgtc gtcaggaggg cggacatccc gaggatgtcg ggcttgtgct cctcgagcgc
     1321 ggccatgaac ttgtcggcgt cggtgttgat cccgagatcg tggacctcga agccggcgcc
     1381 ctcgagcatc atcgccacga ggttcttgcc gatgtcgtgg atgtcgccct tgaccgtgcc
     1441 gatgacgacc cggccgatcg gcttggcgcc gggctccgcg agcaggggcc gcaggatcgc
     1501 catgccggcc ttcatcgcgt tcgcggcgag caggacctcc ggcacgaaca ggatgccgtc
     1561 ccggaagtcg atg
//
LOCUS       DATDDI010000701         3897 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_98192, whole genome shotgun sequence.
ACCESSION   DATDDI010000701 DATDDI010000000
VERSION     DATDDI010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98192"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VIU37_10140"
     CDS             complement(<1..497)
                     /locus_tag="VIU37_10140"
                     /inference="COORDINATES: protein motif:HMM:NF012974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase N-terminal domain-containing
                     protein"
                     /protein_id="HEY6014360.1"
                     /translation="MIDRLPPQSLEAEQSVLGAILIDRDAVIEVAEFLRPADFYRQAN
                     GRIYAAVLDLFERREPIDIVTVAETLERRDELEAVGGRAYLSSLSNETPTAVHVAQYA
                     RIVERKAVLRNLIGAAGRIAGIGYEDHRGGGAELRAPLRSGKMVLHAAAALVRDGEPR
                     ARGQRR"
     gene            complement(758..1408)
                     /gene="lexA"
                     /locus_tag="VIU37_10145"
     CDS             complement(758..1408)
                     /gene="lexA"
                     /locus_tag="VIU37_10145"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEY6014361.1"
                     /translation="MTKHDAERKIKIIDFIAATLRARGFPPSVREIARAVGLASTSAV
                     HHHLQILEREGYLERGAAQSRAIRLTPTAAIRLGLTNELVPQSTAGEARVLPIIGEIA
                     AGGPIEAYQDASETMAVPDLLAPSGDAYVLRVRGDSMIEAHIADGDFVLIRPQTTARN
                     GDIVVAQVEENAVTLKRFFKEKDQIRLQPANPAYPAQFYDDVRIQGKLIGVIRRLD"
     gene            1550..2065
                     /locus_tag="VIU37_10150"
     CDS             1550..2065
                     /locus_tag="VIU37_10150"
                     /inference="COORDINATES: protein motif:HMM:NF018508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HEY6014362.1"
                     /translation="MARSSAKRRRGSRGRAGVGRVLKLLAFLPVASRIPTYARLVTAL
                     VMDDRMPAGRKALLAGAAGYLVIGRDVIPDSFPILGGIDDLVVVVLAVDLFLEGAPDD
                     LLDEKLDELGIDRDSFDRDIAQIRRLTPGPVRRTIRRVPDLVGGAGDVLKQLGLGPRM
                     RAWITKEDRSA"
     gene            2062..2508
                     /gene="rplI"
                     /locus_tag="VIU37_10155"
     CDS             2062..2508
                     /gene="rplI"
                     /locus_tag="VIU37_10155"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEY6014363.1"
                     /translation="MKVILTKDVAKLGKSGEMRVVADGYATNFLIPNKLAVPAAGGAY
                     RAWQHDIASREDKRIRERADAEIAATRIASTTLTMGVKVGEGGKLYGSITSKDIADAL
                     GRRGIEVDRHKIDLEDPLKTLGTFKVAIKVFAGMTAEVTVVVEPKG"
     gene            2642..>3897
                     /locus_tag="VIU37_10160"
     CDS             2642..>3897
                     /locus_tag="VIU37_10160"
                     /inference="COORDINATES: protein motif:HMM:NF005560.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY6014364.1"
                     /translation="MRYGVIGAGALGLTVALRLAGKGHEVTVLERDPVPGGLAGSFEV
                     APGIWLEKFYHHLFRTDRSAVALIDEVGLGEALQWHKPVTTVFLGGRTYPMDSPQAVL
                     RFPPLSIPSRLRLATGLAYLRVLPTARSLERRTAGRWMRRVMGGPAYETVWEPLLRGK
                     FGSAADEVSMAWLWARIHCRTESLGYLHGGFHQLYLALSRRVTDLGGTIEYGAAVSSI
                     GRHGTGLTVRYQRNGEDATAEFDRVVSTLPTGLTVRLTPDMPADYAARHPAPRALGAH
                     CLILSLDRPLTDVYWIGVNEPDMPFLAAVEHTNLVDPSEYGGRHLVYLGNYRAHDDPI
                     FKSSTDEVLAAFEPGLRQLNPAYDPSWIRDAWSFGAPFAQPIVTPAFARTIPGFDTPV
                     DGLYVANMFQVYPYDRGQNYSIELAER"
BASE COUNT          602 a         1330 c         1362 g          603 t
ORIGIN      
        1 cgacgttgcc ctcgagcgcg aggctctcca tctcggacaa gcgctgcggc tgcatgtaga
       61 accattttac cacttcggag gggtgctcgt agctctgcgc ctccgcctcg atggtcctcg
      121 tagccgatcc cggcgatccg ccccgccgcc ccgatcaggt ttcgaaggac cgccttccgc
      181 tcgacgatcc gcgcgtactg ggcgacgtgg accgccgtcg gggtctcatt cgacaggctc
      241 gacaggtagg cgcggccgcc cacggcttcc agctcgtcac gacgctcgag tgtctcggcg
      301 accgtgacga tgtcgatcgg ctcgcgacgc tcgaacaggt cgagcacggc cgcgtagatc
      361 cgcccgttcg cctggcggta gaagtcggcc ggtcgcagga actccgcgac ctcgatcacc
      421 gcgtcgcgat cgatgaggat ggcacccaag accgactgct cggcctcgag actctgtggc
      481 ggcaggcgat caatcacgcg cggcggactc catcagcggt ggggcaggca acagcatgga
      541 cgcccggccc gagcgccgaa agtgccttat ccccgtgcgc cgtccacaag attcacgtgg
      601 agtgttgagg gtgtggaaag ctcgtcaata ccgagaatcg gcgcgccggg cggtcgaggc
      661 gaaggcgggg cgcgagcact agagcgagcg cactagcagt gcgtgagcga acggcggagc
      721 ggcccaacgc gcgcatcggc cgtcctgcgc gccgccctca gtcgagacgt cgaatgacac
      781 cgatcagctt gccctggatg cgtacatcgt cgtagaactg ggcagggtag gccgggttcg
      841 ccggctggag ccggatctgg tccttctcct tgaagaaccg cttgagggtg accgcgttct
      901 cctccacctg ggcgacgacg atatcgccgt tccgggcggt ggtctgcggc cggatgagca
      961 cgaaatcgcc gtccgcgatg tgcgcctcga tcatcgagtc gccgcggacg cgcaggacgt
     1021 aggcatcgcc gctgggggcg aggagatccg ggaccgccat ggtctccgag gcgtcctggt
     1081 acgcctcgat cggtccgccg gccgcgatct cgccgatgat cggcaggacg cgcgcctcgc
     1141 cggccgtcga ctggggcacg agctcgttgg tcagccccag ccggatggcg gcggtgggcg
     1201 tgaggcggat ggcccgggat tgcgcggccc cccgctccag gtacccctcc cgctcgagga
     1261 tctggaggtg gtgatggacc gccgaggtgg acgccaggcc gacggcccgg gcgatctccc
     1321 ggacagacgg cgggaacccg cgggcacgaa gcgtggcggc gatgaagtcg atgatcttga
     1381 tcttgcgttc ggcgtcgtgc ttggtcactc gcgcctcctt gcggatcatc atagcgaacg
     1441 gacgttcgat gtcaagacgg cgccgatcgc gcgaggaccg cggaagcgtg agcgtccgag
     1501 cgtgggactg gtagactcct cgatcccgga cgagtgaggc accaggcgca tggcacgcag
     1561 cagcgcgaag cgaaggcgag gttcccgcgg tcgggcgggc gtcggccgcg tcctgaagct
     1621 gctggcgttc ctgccggtgg ccagccggat cccgacctat gcccggctcg tcacggccct
     1681 cgtcatggac gaccggatgc cggccggacg caaggccctg ctcgccggag ccgccggcta
     1741 tctcgtgatc ggccgcgatg tcattccaga ttcgttcccg atcctgggcg gcatcgacga
     1801 cctcgtcgtc gtcgtcctcg ccgtcgacct gttcctcgaa ggggcgcccg acgacctgct
     1861 cgacgagaag ctcgacgagc tcggcatcga ccgcgactcg ttcgatcggg acatcgccca
     1921 gatccggcgc ttgacgcccg gaccggtccg gcggaccatc cgccgggttc cggatctggt
     1981 tggtggcgcc ggagacgtct tgaagcaact cggtctcggg ccccggatgc gggcctggat
     2041 caccaaggag gatcgcagcg cgtgaaggtc atcctgacga aggacgtcgc caagctcggc
     2101 aagagcggcg agatgcgagt ggtggccgac ggctacgcca cgaacttcct gatccccaac
     2161 aagctcgccg tccccgccgc cggtggcgcc taccgggcct ggcagcacga catcgccagc
     2221 cgcgaggaca agcggatccg cgaacgcgcc gacgccgaga tcgcggccac ccggatcgcg
     2281 agcacgacgc tcacgatggg ggtcaaggtc ggcgaaggcg gcaagctcta cggctcgatc
     2341 acctcgaagg acattgcgga cgcgctcggc cggcggggga tcgaggtcga ccggcacaag
     2401 atcgacctcg aggacccgct caagaccctg ggcaccttca aggtcgcgat caaggtcttt
     2461 gccgggatga ccgccgaagt gaccgtggtc gtggagccca agggctgagg ctcgcgccgg
     2521 ctggcgcgtg ccagccgttc gtcacccgcg ggtggtcctt ccgggccatg ccatggaccc
     2581 gaccccgagg gagtactgtc cccactcgga acgcgaactg agctgacgaa cggggaggcg
     2641 tgtgcgctac ggggtcatcg gtgccggcgc cctcggattg acggtcgcat tgcgcctggc
     2701 cgggaagggt cacgaggtca cggtcctcga gcgcgacccc gtccccggcg ggctggccgg
     2761 gagcttcgag gtggcgcccg ggatctggct cgagaagttc tatcaccacc tgttccggac
     2821 cgaccgctcg gccgttgcgc tgatcgacga ggtcggcctc ggcgaagcgc tgcaatggca
     2881 caagccggtg accacggtct tccttggcgg gcggacgtat ccgatggact cgccgcaggc
     2941 ggtcctgcgg ttcccgccgc tgtcgatccc gagccggctg cggctggcca cggggctcgc
     3001 gtacctgcgc gtcctgccga cggcgcgctc gctcgagcgt cgcacggccg ggcgctggat
     3061 gcgccgggtg atgggcggac cggcctacga gaccgtctgg gagccgctcc ttcgaggcaa
     3121 gttcgggtcc gccgcggacg aggtgtcgat ggcctggctc tgggcgagga tccattgtcg
     3181 gaccgaatcg ctggggtacc tccacggtgg gttccaccag ctctacctgg ccctcagccg
     3241 acgggtgacc gacctgggcg ggacgatcga atacggcgcg gccgtctcga gcatcggccg
     3301 gcacgggacc ggcctgacgg tccgctatca gcgcaacggg gaggacgcca cggccgagtt
     3361 cgaccgggtg gtctcgaccc tgccgaccgg cctgacggtc cgcctcaccc ccgacatgcc
     3421 ggccgactac gcggcccggc atccggcgcc ccgggcgctc ggggcccact gcctgatcct
     3481 gagcctggac cggccgctga ccgacgtcta ctggatcggc gtcaacgagc cggacatgcc
     3541 gttcctggcg gcggtcgagc acaccaacct ggtcgatccg tcggagtatg gtgggcggca
     3601 cctggtctac ctcgggaact accgtgccca cgatgacccg atcttcaagt cgtccaccga
     3661 cgaggtcctg gccgccttcg aaccggggct gcggcaactg aacccggcct acgatccatc
     3721 gtggatccgc gacgcctgga gcttcggggc gccattcgcg cagccgatcg tgacgcccgc
     3781 cttcgcccgg acgatccccg ggttcgacac gccggtcgac ggcttgtacg tcgccaacat
     3841 gttccaggtc tacccgtacg atcgtggcca gaactactcg atcgagctgg ccgagcg
//
LOCUS       DATDDI010000702         2162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_472758, whole genome shotgun sequence.
ACCESSION   DATDDI010000702 DATDDI010000000
VERSION     DATDDI010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472758"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VIU37_10165"
     CDS             complement(<1..248)
                     /locus_tag="VIU37_10165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014365.1"
                     /translation="MTLAPWEYLFLPFNSHNFPDLFHPTWIASAALLIVLGVLYSVRT
                     KALRRHPPYLDLWEWLWWTGLITFSLLVIEALFVFDWFL"
     gene            400..1947
                     /gene="purH"
                     /locus_tag="VIU37_10170"
     CDS             400..1947
                     /gene="purH"
                     /locus_tag="VIU37_10170"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF002049.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEY6014366.1"
                     /translation="MRALLSVANREGIAGLARQLLDLEVEVFATDGTREYLAGEGVSV
                     ASVSELTRELPLVGGQVKTFHHAVYAGILARRDVPAQMAELAEQGIGAIDLVVVNVKP
                     FAPAIGVKLIGLDEAIEMIDVGGAALLGAAARNSAGVAAASDPSHYQPIVNELREFGQ
                     VSAETRARLAAEAFSTVAAYHAEIAAYLNQISGNIFPTRLAMVLEKVEDLRNGENPHQ
                     RAAFYRETTHRSATLADATRLQGEMPSFNNLLDLDAAYRIARDYTAPTVAIVKHTDPV
                     GLASHDELVEAYRHALETDSVAAFGGIVGVNRELDGATAREIAANSYEAVVAPGFSHA
                     ALGILRGKPGLELLAVPPDPTEGMRDYGIASLDFKRIAGGLLVETQDELGLDRGRLQV
                     VTARRPTLEELTDMLFAWRAVRHVRSNAVVLARNGATVGIGAGQASRLVSVEIAVRRA
                     GDRAKLAVMASDAYFPFPDGIQAAAGAGVTAIIQPGGSIRDEMAIEVADRHHLAMVFT
                     GRRHFRH"
BASE COUNT          337 a          746 c          783 g          296 t
ORIGIN      
        1 aggaaccagt cgaacacgaa cagcgcctcg atgaccagca ggctgaacgt gatcaggccg
       61 gtccaccaca gccactccca caggtccagg tagggcgggt gccggcgcag ggccttcgtg
      121 cggaccgagt agagcacgcc caggacgatc agcagcgccg cggacgcgat ccaggtcggg
      181 tggaacaggt ccgggaagtt gtggctgttg aacgggagga acaggtattc ccagggggcg
      241 agcgtcacgc accgacctcg tttgtccggt gttgggttgg tgccgggagt atgccatgtc
      301 gggcggtata ctcggccggt gcgctggggc gccgccgcaa tcgtcggggg caaggacgcc
      361 ccaacaacga gccgcgaggc gaacgggagg aagccccggg tgcgagccct gttgtcagtc
      421 gcgaaccggg aagggatcgc cggactcgcc cgtcagctgc tcgacctcga ggtcgaagtg
      481 ttcgccacgg acgggacgcg cgagtacctg gccggcgaag gcgtgtcggt cgcgtcggtt
      541 tccgagctga cccgggagct gccgctggtc ggcggccagg tcaagacgtt ccaccacgcc
      601 gtgtatgccg ggatcctggc caggcgcgat gtcccggcgc agatggcgga gctcgcggag
      661 cagggcatcg gggcgatcga cctggtcgtc gtcaacgtca agccgttcgc gccggccatc
      721 ggcgtcaagc tcatcgggct cgacgaggcg atcgagatga tcgacgtcgg cggcgcggcc
      781 ctgctcggcg ccgcggcccg caactcggcc ggcgtcgccg cggcctcgga tccatcccac
      841 taccagccga tcgtcaacga gctgcgcgaa ttcggccagg tcagcgcgga gaccagggcg
      901 cgcctggcgg cagaggcatt cagcaccgtg gccgcatacc acgccgagat cgcggcctac
      961 ctgaaccaga tctccgggaa catcttcccg acccggctgg cgatggtcct cgagaaggtc
     1021 gaggacctgc gcaacggcga gaacccccac cagcgagcgg cgttctaccg cgagaccacg
     1081 caccggagcg cgacgctcgc cgacgccacg cgcctccagg gcgagatgcc ctcgttcaac
     1141 aacctgctcg acctggacgc cgcctaccgg atcgcccgcg actacacggc gccgacggtt
     1201 gcgatcgtca agcacaccga ccccgtgggc ctcgcctcgc acgacgagct cgtcgaggcg
     1261 taccggcacg cgctcgagac cgactcggtc gcggccttcg gcgggatcgt cggcgtcaac
     1321 cgcgagctcg acggtgccac tgcccgggag atcgccgcca attcgtacga ggcggtcgtc
     1381 gcgcccgggt tcagccacgc ggcgctcggg atcctgcgcg gcaagcccgg gctcgagctg
     1441 ctggcagtcc cgccggaccc gacggagggg atgcgcgact acgggatcgc gagcctcgac
     1501 ttcaagcgga tcgccggcgg gctcctggtc gagacgcagg acgagctcgg gctcgaccgc
     1561 ggacggctgc aggtcgtgac cgcccggcgg ccgacgctcg aggagctgac cgacatgctc
     1621 ttcgcctggc gagccgtccg gcacgtgcgc tcgaacgccg tcgtcctggc tcgcaacggc
     1681 gcgacggtgg ggatcggcgc cgggcaggcc agccggctgg tctcggtcga gatcgcggtc
     1741 cgccgcgcgg gcgaccgggc gaagctggcg gtcatggcgt cggacgccta cttcccgttc
     1801 cccgacggga tccaggccgc ggccggggcc ggcgtcaccg cgatcatcca gcccggcggc
     1861 tcgatccgcg acgagatggc gatcgaagtg gccgaccgcc atcacctggc catggtgttc
     1921 acggggagac ggcattttcg acattgagtg ggtccgagat ccggtccggg cgccgcgttg
     1981 gacgctgcgc gcgctcgctc acgcacgccg cagtgcgctc gctcacgtgc tcacgcccgc
     2041 cttgcgcgcg ggccggctga cggaccctga cggttcctga tggagcagcg actcgcgctg
     2101 gagatgatcc gcgtcacgga agcggcggcc atcgagtcgg cgcggttcat gggtcgcggt
     2161 gc
//
LOCUS       DATDDI010000703         3025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_306137, whole genome shotgun sequence.
ACCESSION   DATDDI010000703 DATDDI010000000
VERSION     DATDDI010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306137"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..823)
                     /locus_tag="VIU37_10175"
     CDS             complement(5..823)
                     /locus_tag="VIU37_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017405465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEY6014367.1"
                     /translation="MVEIANDILAAIGGVPRPATDIVVEATDVVKWFGRLQVLKGVSM
                     TVKRAEVVVMIGASGSGKTTFIRCLNHLEKIQGGRIFVNGHLIGYREENGKLVEDREQ
                     NVAKQRQDIGMVFQRFNLFPHMTALGNVIEAPIRVRGTPEKEAVAVGRALLERVGLAH
                     KADAYPAQLSGGQQQRVAIARALAMKPELMLFDEPTSALDPEMIGEVLEVMKELAREG
                     MTMIVVTHEMGFAREVADSLVFMDGGVVVESGDPREVLGNPQHQRTKVFLSKVL"
     gene            complement(823..1623)
                     /locus_tag="VIU37_10180"
     CDS             complement(823..1623)
                     /locus_tag="VIU37_10180"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEY6014368.1"
                     /translation="MQFDGDFFLKFVFEPTPALIGGLAITVFASIFAQAVGVVLGILS
                     ALAGMARSRPLRLISGVYVWFFRGTPVLVQMFLVYFGTPYLFGVDLFPNHMQAGWLDL
                     KGAVVAGTVALAINEGAYMSEIVRAGILSVDPGQTEAAKSLGMTYRLTMSRIVLPQAL
                     RVIVPPLGNEFNNMLKTTSLMSAIAVEEMFRVATGVAASSFKPFEVYFGIALYYLALT
                     TIWSVIQSRIERRLGAGTVRDDRPGLFSRMLGLSRSRDGQGAASIGGH"
     gene            complement(1688..2545)
                     /locus_tag="VIU37_10185"
     CDS             complement(1688..2545)
                     /locus_tag="VIU37_10185"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6014369.1"
                     /translation="MTTSMRRAAGLLAVAALALSACSSSGGSAAPAGGAAIQPPDAVK
                     TAGKLVWCVDVSYPPEEFYAADGSTAQGSDIDIANEIGKRFGVTSEIDNTAFDGIVAA
                     LLAKKCDLIISGMNDTPERQKEVDFVDYLKVGQGLLVPVGNPKGIHTLDDLSGKTVAV
                     QLGTTNKDALDAANTALTAAGKPAIEIQTFEKDTDAFQQLSLGRVDAFSTDSPVVAYY
                     NSKPENKGKYEIGGTPIDPAPIGIAVNKDNTALKTAVQAAIDAMYADGTMKSITDKWG
                     MTDAVVFLK"
     gene            complement(2671..>3025)
                     /locus_tag="VIU37_10190"
     CDS             complement(2671..>3025)
                     /locus_tag="VIU37_10190"
                     /inference="COORDINATES: protein motif:HMM:NF019533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1684 domain-containing protein"
                     /protein_id="HEY6014370.1"
                     /translation="FQIPTSDGRLRPAHRAGILAFERGEERRMLTAYTFDGGDGESLF
                     VPFLDATSGTETYGAGRYLDLEPEEDGTYTLDFNLAYHPSCVYDPRYSCPLTPAENRL
                     PVRIEAGERLAPPTA"
BASE COUNT          481 a         1022 c         1034 g          488 t
ORIGIN      
        1 gccttcacag aaccttcgag agaaatacct tcgtgcgctg gtgctgcggg ttgccgagca
       61 cctcgcgcgg atcccccgac tcgaccacga cgccgccatc catgaacacg agcgaatcgg
      121 cgacctcgcg cgcgaagccc atctcgtggg tgacgacgat catcgtcatg ccctcgcggg
      181 cgagctcctt catgacctcg aggacctcgc cgatcatctc ggggtcgagc gccgaggtcg
      241 gttcgtcgaa cagcatcagc tcgggcttca tggccagcgc ccgggcgatc gcgacgcgct
      301 gctgctggcc accggacagc tgcgccgggt aggcgtcggc cttgtgggcc agcccgaccc
      361 gttcgagcag cgcccgcccc acggcaacgg cctccttctc gggcgtgccg cggacgcgga
      421 tcggcgcctc gatcacgttc cccagcgccg tcatgtgcgg gaacaggttg aaccgctgga
      481 acaccatccc gatgtcctgc cgctgcttcg ccacgttctg ctcgcggtcc tcgacgagct
      541 tgccgttctc ctcgcgatac ccgatgaggt ggccgttcac gaagatccgg ccgccctgga
      601 tcttctcgag gtggttgagg cagcggatga acgtcgtctt gcccgagccg gaggcgccga
      661 tcatcacgac gacctcggca cgcttgacgg tcatcgacac gcccttgagg acctgcagcc
      721 tgccgaacca cttcacgacg tcggtcgcct cgaccacgat gtcggtcgcc ggccgcggca
      781 cgccaccgat cgcggcgagg atgtcgttgg cgatctcgac catcagtggc ctccgatcga
      841 cgcggcgccc tggccgtcgc gcgagcgcga caggccaagc atccgcgaga acagcccggg
      901 tcggtcgtcc cgcacggtgc ccgccccgag acgtcgctcg atgcgactct ggatcacgct
      961 ccagatcgtg gtcagcgcca ggtagtacag ggcgatgccg aagtacacct cgaacggctt
     1021 gaacgacgac gccgcgacac ccgtggcgac gcggaacatc tcctccacgg cgatcgcgct
     1081 catgagcgag gtggtcttga gcatgttgtt gaactcgttg cccagtggcg gaacgatgac
     1141 ccgcagggcc tgcggcagca cgatccgcga catcgtcagg cgataggtca tgccgagcga
     1201 cttggcggcc tcggtctggc cgggatcgac cgacaggatg cccgcccgga cgatctcgct
     1261 catgtaggcg ccctcgttga tcgccagcgc gaccgtgccc gccaccacgg ctcccttcag
     1321 gtcgagccag cccgcctgca tgtggttcgg gaagagatcc acgccgaaca ggtacggcgt
     1381 gccgaagtac acgaggaaca tctggaccag cacgggggtg ccccggaaga accagacgta
     1441 gacgccgctg atcaggcgaa gcggccggct tcgggccatg ccggccagtg ccgacaggat
     1501 gcccaggacg acgccgacgg cctgggcgaa gatcgaggcg aagaccgtga tggcgagccc
     1561 gccgatcagg gcaggcgtcg gctcgaagac gaatttcagg aagaagtcgc catcgaactg
     1621 catcgcgcgc cctccctgga acgaggaacg gacgggcgtc ggcgggcgcc cgtccgttca
     1681 gccgaagcta cttgaggaac accaccgcgt cggtcatgcc ccacttgtcg gtgatcgact
     1741 tcatcgtgcc gtcggcgtac atcgcgtcga tggcggcctg gacggccgtc ttgagcgcgg
     1801 tgttgtcctt gttgacggcg atcccgatcg gcgccggatc gatgggcgtg ccgccgatct
     1861 cgtacttgcc cttgttctcg ggcttgctgt tgtagtaggc gaccaccggc gagtcggtcg
     1921 agaacgcatc cacccggccg agggacagct gctggaacgc gtcggtgtcc ttctcgaagg
     1981 tctggatctc gatggccggc ttgccggccg cggtcagcgc ggtgttcgcg gcgtccagcg
     2041 cgtccttgtt ggtcgtgccg agctggacgg cgaccgtctt gcccgacagg tcatcgaggg
     2101 tgtggatgcc cttgggattg cccaccggaa cgagcaggcc ctggccgacc ttcaggtagt
     2161 cgacgaagtc cacttccttc tggcgctcgg gggtgtcgtt catgccgctg atgatcaggt
     2221 cgcacttctt cgcgagcaac gccgccacga tcccgtcgaa cgcggtgttg tcgatctccg
     2281 aggtgacccc gaagcgcttg ccgatctcgt tcgcgatgtc gatgtcggag ccctgcgccg
     2341 tcgagccgtc ggccgcatag aactcctcgg gcggatacga cacgtcgacg caccagacga
     2401 gcttgccggc ggtcttgacc gcgtcgggcg gctggatcgc ggcaccgccg gccggggcgg
     2461 ccgaaccgcc ggagctgctg caggcggaca gggcgagcgc tgcgacggcc agcaagccgg
     2521 ccgctcgccg catggacgtg gtcatgggtg cctcctcgtg cgagaccagg ccgagggacg
     2581 gaggctcccc gggtacgccg gaacaggagc tcggaccgat cgcccgtagc ctacgccagc
     2641 ccgccaagcg cgtggggttg cgaaccggtg tcaggcggtc ggaggagcga ggcgctcgcc
     2701 cgcctcgatc cggacgggca gccggttctc ggccggggtc agcgggcagg aataccgggg
     2761 gtcgtacacg cacgacgggt ggtaggccag gttgaagtcg agcgtgtagg tcccgtcctc
     2821 ctcgggctcg aggtccagat aacggccggc gccgtacgtc tcggtgccgc tcgtggcatc
     2881 gaggaacggc acgaacagcg actcgccgtc gccgccgtcg aacgtgtagg cggtcagcat
     2941 tcgtcgctcc tcgccgcgct cgaaggccag gatgccggcc cgatgggcgg gccggagcct
     3001 gccgtcggac gtcgggatct ggaag
//
LOCUS       DATDDI010000704         1851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_327219, whole genome shotgun sequence.
ACCESSION   DATDDI010000704 DATDDI010000000
VERSION     DATDDI010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327219"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VIU37_10195"
     CDS             <1..213
                     /locus_tag="VIU37_10195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014371.1"
                     /translation="RYVVQAVPVAGTTLGCGDAFIAWFLDAWWRTGDLDAAVAQGMIG
                     GARTTAWPRPLPDDAYDLQPAIEGAP"
     gene            213..986
                     /locus_tag="VIU37_10200"
     CDS             213..986
                     /locus_tag="VIU37_10200"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014372.1"
                     /translation="MPIHLQSQPGDYAPTVIIPGDPIRATKIAARFDGGLDATRQVNN
                     NRGLVGYTGTVGGVPVSVQVTMMGSPTTGIVVEELLMLGVQTLIRVGTTGAFGKAQIG
                     DVIVALAAAGWTGHANIIGGGEASAPTADLDVVLALRDAARAAGLTTHVGPIVTGDVF
                     YGDPNPVYRWGRRGYPSVEMETATLLLLVMRERAKGRPVRAGSILTVSDVLFDPDDAE
                     AARRSGGQAFYRPPEDEVNRRVDLTIGAALAAAAALGRS"
     gene            complement(1090..>1851)
                     /locus_tag="VIU37_10205"
     CDS             complement(1090..>1851)
                     /locus_tag="VIU37_10205"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEY6014373.1"
                     /translation="GIGVTPVDMTDLVAVEAAITPSTKVLFFETATNPRLRVADIDAL
                     AALGHRHDLIVVADNTFLAPALLRPLEHGADLVVHAATKWLSGHGDAVSGAVTGRRAL
                     LDPIRKQVDTLGQAASPFASWLVLRGVRSLPLRSRAASANALRLARFLESQPKVDWVR
                     YPGLASHPDHATAERLIDGPGGGMLAFQVRGGVEGMAAFTDHLALCDLGVSLGDIFTL
                     VYPQPKRGGLIRVSVGCEDIDDLIADFELGLSFVA"
BASE COUNT          274 a          664 c          671 g          242 t
ORIGIN      
        1 cgctacgtgg tccaggcggt gcccgtcgcg gggacgacgc tcggctgcgg cgacgccttc
       61 atcgcctggt tcctcgacgc gtggtggcgc acgggcgacc tcgacgccgc cgtcgcacag
      121 ggcatgattg gcggcgcacg aaccactgcg tggccgcggc cactccccga cgacgcctac
      181 gaccttcagc cagccatcga aggagctccc tgatgccgat ccacctgcag tcgcagcccg
      241 gcgactacgc gccgaccgtg atcatcccgg gcgacccgat ccgggcgacg aagatcgcgg
      301 cacgcttcga tggcgggctt gacgccacgc gccaggtcaa caacaaccgc ggcctcgtcg
      361 gctacaccgg caccgtgggt ggcgttcccg tgtcggtcca ggtgacgatg atgggctcgc
      421 cgacgacggg catcgtggtc gaggagctgc tgatgctcgg cgtgcagacg ctgatccgcg
      481 tcggcaccac cggggccttc ggcaaggcgc agatcggcga cgtcatcgtc gcgctggcgg
      541 ccgccggctg gacgggtcac gcgaacatca tcggcggcgg cgaggcgagc gccccgaccg
      601 ccgacctgga cgtcgtcctc gccctgcgcg atgccgctcg cgccgcgggg ctgaccacgc
      661 atgtcgggcc gatcgtgacc ggcgacgtct tctacggcga cccgaacccg gtctaccgct
      721 ggggccgccg gggctacccc tcggtcgaga tggagacggc gacgctgctc ctcctggtga
      781 tgcgcgagcg ggcgaagggt cgaccggtcc gcgcaggttc gatcctgacc gtctccgacg
      841 tcctgttcga tccggacgac gccgaagccg cacggcgctc cggcggccag gcgttctatc
      901 gcccgcccga ggatgaggtc aaccgacgcg tcgacctcac catcggcgcc gcgctcgccg
      961 ccgccgccgc gctcggtcgc tcgtaggaac cagggctgcc gtcggcccaa ggcgcttgtc
     1021 ggggcaaacg atcaccgcgc gatcaccggc ggtccgatcg aacgagtgcg cgggggtccg
     1081 accgcacggt caggcgacga acgacagccc gagctcgaag tccgcgatga gatcgtcgat
     1141 gtcctcgcag cccaccgaca cgcggatcag gccgccgcgc ttcggctgcg ggtacacgag
     1201 cgtgaagatg tcgccgaggc tgacgccgag gtcgcacagc gcgaggtggt cggtgaacgc
     1261 ggccatgccc tcgacgccgc cgcggacctg gaacgcgagc atgccaccgc ccgggccgtc
     1321 gatcaggcgc tccgccgtcg cgtggtcggg gtgtgaggcg aggccgggat agcgaaccca
     1381 gtcgaccttc ggctgcgact cgaggaaccg ggcgagcctg agcgcattgg ccgaggcggc
     1441 gcgcgaccga agcgggagcg agcggacgcc ccgaagcacg agccagcttg cgaacgggct
     1501 cgccgcctgg cccagcgtgt cgacctgctt ccggatcggg tcgaggagcg cccgccggcc
     1561 cgtgaccgcg ccagacaccg cgtcgccgtg gccggagagc cacttcgtgg cggcgtggac
     1621 gacgaggtcc gcaccgtgct cgagcgggcg gaggagggcc ggcgccagga aggtgttgtc
     1681 cgcgacgacg atcaggtcgt gccggtggcc gagcgccgcg agcgcgtcga tgtccgccac
     1741 ccggagacgc gggttcgtcg ccgtctcgaa gaagagcacc ttcgtggaag gcgtgatcgc
     1801 cgcctcgacc gccaccaggt ccgtcatgtc gaccggcgtg acgccgatgc c
//
LOCUS       DATDDI010000705         2976 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_202444, whole genome shotgun sequence.
ACCESSION   DATDDI010000705 DATDDI010000000
VERSION     DATDDI010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202444"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..256
                     /locus_tag="VIU37_10210"
     CDS             <1..256
                     /locus_tag="VIU37_10210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014374.1"
                     /translation="PDGSTLFVAGSGGIVRIATSGLTSGRTLLTGSAVDSLALNPDGA
                     TLYALLHRGGQIVALDASTGEVVGRVPGEGFDRLVAIVPW"
     gene            complement(294..1076)
                     /locus_tag="VIU37_10215"
     CDS             complement(294..1076)
                     /locus_tag="VIU37_10215"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEY6014375.1"
                     /translation="MSGETTFSKSEMMIVAAARALAGQHVCFVGVGLPNIAVNLAKRT
                     VAPELELVYEAGVFGARPARLPLSIGDPTIVTGATAVVSMVELFGYYLQRGLIDVGFL
                     GAAQIDRFGNINTTVIGDYAHPKTRLPGSGGACEIAINAREVFVIMRQSRRSFVDAID
                     FRTSPGNLGGAAEADRIRREGGWLGRGPSVVVTDLGIYHFDERGEMRLDSLHPGATLE
                     AVRETIGWDVAIAADLAETPPPSGEELRLIREELDPGGVYTK"
     gene            complement(1252..2178)
                     /locus_tag="VIU37_10220"
     CDS             complement(1252..2178)
                     /locus_tag="VIU37_10220"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEY6014376.1"
                     /translation="MTTSKVASMRDAVRDLVRDGDIVAIEGFTHLISFAAGHEIIRQR
                     KRDLTLARLTPDLVYDQMIAAGVARKLIFSWLGNPGVGGLGAIRRRVEGELPDQPLEL
                     EEYSHFGMVGRYTAGAMNLPFFPLRSYFETDLPVANPLIRPVASPYGDGTIYAVPPLR
                     PDVTIVHAQRASAGGDTQVWGLLGCQKEAAFAAERVIVVVEELVDEAVIRADPNRTII
                     PGLIVDAVVVEPWGAHPSYVQGAYDRDNRFYLDWDPITRDEATTQAWLKEWVYGLDGR
                     AAYLEKLGTERLASLRPSGSAPSGSVDYGAYR"
     gene            complement(2227..>2976)
                     /locus_tag="VIU37_10225"
     CDS             complement(2227..>2976)
                     /locus_tag="VIU37_10225"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6014377.1"
                     /translation="LFDKLVPANEVAAIIVEPIQGEGGYVVPEDGFLQGLRRICDEHG
                     ILLIADEIQSGAGRTGKMWAIEHWGVEPDILLSAKGIASGMTLGALVARAEILETWGA
                     GAHGSTYGGNPVACAAALATIELLEGGLIDNAIARGEQALTGLADLRRRFPSLVRDVR
                     GKGLMLGIEFDTADHAEEVQWEAYQKGLLVLECGKSSVRMSPALTVSEAEMATALRIF
                     AESVAAVAGEHGEILAAATAAGVINEVEEAV"
BASE COUNT          409 a         1078 c         1052 g          437 t
ORIGIN      
        1 gccggacggg tcgacgctct tcgtggcggg ctcgggcggg atcgtccgga tcgccacgag
       61 cggcttgacg agcggtcgga cgctgctcac cgggtcggcg gtcgacagcc tcgccctcaa
      121 cccggacggt gcgacgctct acgcgctgct ccaccgcggt ggtcagatcg tggcgctcga
      181 cgcatcgacc ggcgaggtcg tcgggcgcgt ccccggcgag gggttcgacc ggctggtcgc
      241 gatcgtgccc tggtaggcgc cgagccaggc ggcgcctggc ccgctgctcc gcgctacttg
      301 gtgtagacgc cgccggggtc gagctcctcg cggatgagtc gaagctcctc gccggacggc
      361 ggcggggttt cggccaggtc ggcggcgatc gcgacgtccc acccgatcgt ctcgcgcacc
      421 gcctcgagcg tcgcgcccgg gtggagggag tcgagtcgca tctcgccccg ctcgtcgaag
      481 tgatagatcc cgagatcggt cacgaccacg ctcgggccgc ggccgagcca gccgccctcc
      541 cgccggatcc ggtccgcctc ggccgcgccg ccgaggttgc cgggggacgt ccggaagtcg
      601 atggcgtcga cgaagctgcg ccggctctgg cgcatgatca cgaacacctc gcgcgcgttg
      661 atcgcgatct cgcaggcccc gccggatccc ggcagcctcg tcttcgggtg cgcgtagtcg
      721 ccgatcacgg tcgtgttgat gttgccgaac cggtcgatct gcgcggcacc caggaacccg
      781 acgtcgatca ggccgcgttg gaggtagtaa ccgaacagct cgaccatgct gacgactgcg
      841 gtcgccccgg tcacgatcgt cgggtcgccg atcgacaagg gcagccgcgc cggcctcgcc
      901 ccgaacacgc ccgcttcgta gacgagctcg agctcgggcg cgacggtgcg cttggccagg
      961 ttgacggcga tattcggcag gccgaccccg acgaagcaga catgctggcc ggccagcgct
     1021 cgcgccgcgg cgacgatcat catctcggac ttggagaagg tcgtctcgcc gctcatcgtg
     1081 cggaccgtcc ggcgcgcaga cgatgcgcat tgtgtcgctc ggggacccgt ctcgaggcca
     1141 gggcggaccg cccggccgtc gccatgcgca gcaggtgcgc acgtcgtcgg cggacctggg
     1201 ccccgagcga cgggatgcgc gacccgcgcg caaggatggt cccgatcgac gtcaccggta
     1261 ggctccgtag tccacgctgc ccgacggggc gctcccgctc ggtcggagcg aggcgagccg
     1321 ctcggtgccg agcttctcga ggtacgccgc ccgcccgtcc agcccgtaca cccactcctt
     1381 cagccaggcc tgggtcgtgg cctcgtcacg ggtgatcggg tcccagtcga ggtagaaccg
     1441 gttgtcccgg tcgtaggcgc cctgcacgta cgacgggtgc gcgccccatg gctcgacgac
     1501 cacggcgtcg acgatcaggc ccgggatgat cgtccggttg ggatcggcgc ggatgaccgc
     1561 ctcgtcgact agctcctcga cgaccacgat cacccgctcg gccgcgaacg ccgcctcctt
     1621 ctggcagccg agcagccccc agacctgcgt gtcgccaccg gccgaggccc gctgggcatg
     1681 gacgatcgtc acgtccggcc ggagcggcgg gaccgcgtag atcgtcccgt cgccgtacgg
     1741 cgaggcgacc ggccggatca gcgggttggc gaccggcagg tcggtctcga agtagctccg
     1801 gagcgggaag aacggcaggt tcatcgcccc ggcggtgtac cgcccgacca tcccgaaatg
     1861 gctgtactcc tcgagctcga gcggctggtc ggggagctcg ccctccacgc gccggcggat
     1921 ggcgcccagc ccgccgacgc ccgggttgcc gagccacgag aagatcagct tcctggcgac
     1981 cccggccgcg atcatctggt cgtagaccag gtccggcgtc agccgggcga gggtcaggtc
     2041 ccgcttgcgc tggcggatga tctcgtggcc ggcggcgaac gagatcaggt gggtgaatcc
     2101 ctcgatcgcg acgatgtcgc cgtcgcgcac gagatcgcgc acggcgtcgc gcatcgacgc
     2161 cactttcgag gtggtcaccg tcggattatc gggcagcgaa ggtcgccggg tgcgagccgg
     2221 cggtcgtcag accgcctcct cgacctcgtt gatcacaccg gcggccgtcg cggcggccag
     2281 gatctcgccg tgctcgccgg cgaccgcggc gaccgactcg gcgaagatcc gcagcgcggt
     2341 cgccatctcg gcctcgctga cggtgagcgc cggcgacatc cggacgctcg acttgccgca
     2401 ttcgagcacc agcaggccct tctggtaggc ctcccactgg acctcctcgg cgtggtcggc
     2461 ggtgtcgaac tcgatcccga gcatcagtcc cttgccacgg acgtcgcgga ccagcgacgg
     2521 gaagcggcgg cgcaggtcgg ccaggccggt cagcgcctgc tcgccgcggg cgatcgcgtt
     2581 gtcgatcagg ccgccctcga gcagctcgat cgtcgccagt gccgcggcgc acgcgaccgg
     2641 gttgccgccg tacgtggagc cgtgggcgcc cgcgccccag gtctcgagga tctcggcacg
     2701 ggcgaccagc gcgccgaggg tcatcccgga ggcgatgccc ttggccgaca gcaggatgtc
     2761 cggctcgacg ccccagtgct cgatcgccca catcttgccg gtccggccgg cgcccgactg
     2821 gatctcgtcg gcgatcaaga ggatcccgtg ctcgtcgcat atccggcgga ggccctgcag
     2881 gaacccatcc tcgggaacga cgtagccgcc ctcgccctgg atcggctcca cgatgatcgc
     2941 cgcgacctcg ttggccggca ccagcttgtc gaacag
//
LOCUS       DATDDI010000706         1865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_431425, whole genome shotgun sequence.
ACCESSION   DATDDI010000706 DATDDI010000000
VERSION     DATDDI010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431425"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..518)
                     /locus_tag="VIU37_10230"
     CDS             complement(<1..518)
                     /locus_tag="VIU37_10230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014378.1"
                     /translation="MDQRSISLLEFPAVRARLAGLTSFGPSRVLAERLEPSSDPVIVA
                     RGLDETDQARSLLEERPGVGIGAARDIGPAVERAARGGRLEPAQFLELADTLDAASRL
                     ATMLADERRVLLRELGRELHPLPGLRSTLARSFDPVGELLDTASPRLGGLRAAVRVAY
                     DRLRRRLDSLVGA"
     gene            complement(530..1315)
                     /locus_tag="VIU37_10235"
     CDS             complement(530..1315)
                     /locus_tag="VIU37_10235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEY6014379.1"
                     /translation="MRDRRLLPLDADPGRLLPDRVPRPEQHPVALPTSRLSPVDRATL
                     AGPTLEAGQALLGARLVRDDDTGRRVGRVVEVEAYIGQDDRASHARFGETGRNRVMFG
                     PPGRAYVYLVYGMYDCLNVVTEPEGSPAALLIRAVEPLEGVDVMRRARIGHDAARFRG
                     RDPARDSLAAARLMAVPGHRLASGPGLVGAAFGLDPSWTGVDLCDPASPLRLETAPAI
                     ETAPPIRATRRIGIDGAGAPWTEVPWRLCLAGHPSVSGPAWAR"
     gene            complement(1207..1797)
                     /locus_tag="VIU37_10240"
     CDS             complement(1207..1797)
                     /locus_tag="VIU37_10240"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEY6014380.1"
                     /translation="MDFGEFLGGIRTVDLLIVLYFIGFFVLGFAQGTIRRLIGIGSIL
                     FSFLFAANLADPLGRFLADNWTQFPRPYSYMIGFGAVFAAAAVAFALVVQSYYRPQQL
                     FQRARFADEILGGILGLLQAAIVFGAVLIILDSFFRLPGYAPDPQELPFLRDFWGGLD
                     GSATAAFFRSTLIPDAFFLIGFLVPSNIQSLYPRAG"
BASE COUNT          313 a          673 c          677 g          202 t
ORIGIN      
        1 gcgccgacga gcgaatccag ccgccgccgc agccggtcat aggccacgcg gaccgcggcc
       61 cgcaggccgc cgagccgcgg cgacgcggtg tcgagcagtt cgccgaccgg gtcgaagctc
      121 cgggcgagtg tcgagcggag gcccggcagc ggatgcagct cgcgaccgag ctcgcggagg
      181 agcacccggc gctcgtcggc gagcatcgtg gcgagccgcg acgcggcgtc gagcgtgtcg
      241 gccaactcga ggaattgggc cggttcgagc cgtccgccgc gcgccgcgcg ctcgacggcc
      301 ggaccgatgt cgcgggccgc cccgatcccg acacccgggc gctcctcgag cagggaccgt
      361 gcctggtcgg tctcgtcgag accgcgtgcc acgatcaccg gatcggacga cggttcgagc
      421 cgctcggcca gcacgcgcga cggcccgaac gacgtcagcc cggccagccg cgcgcgaacc
      481 gcggggaact cgaggagcga gatcgaacgc tggtccatgt cgacgatcgc tagcgcgccc
      541 aggccggacc ggagaccgac ggatgccctg ccaggcagag ccgccacggg acctcggtcc
      601 agggggcgcc ggcaccgtcg atcccgatcc gccgggtggc gcggatcggc ggcgcggtct
      661 cgatcgcagg ggccgtctcc aggcgcagcg gtgaggccgg atcgcacagg tcgaccccgg
      721 tccatgacgg atccaggccg aacgccgcgc cgacgaggcc cggcccgctc gccaggcgat
      781 gaccaggcac ggccatgagc cgtgccgcgg ccaggctgtc gcgcgccgga tcccgacccc
      841 ggaaccgcgc cgcgtcgtgg ccgatccgag cccgtcgcat gacgtccacg ccctcgagcg
      901 gctccaccgc gcggatgagc agggcggccg gcgaaccctc gggctcggtc accacgttga
      961 ggcagtcgta catcccgtag acaaggtaca cgtaggcgcg gcccgggggt ccgaacatga
     1021 cccgattgcg gccggtctcg ccgaaccggg catgcgacgc gcggtcgtcc tgcccgatgt
     1081 acgcctccac ctccacgacc cgaccgacgc gccggccggt gtcgtcgtcc cggaccagtc
     1141 gggcaccgag cagcgcctgt ccggcctcca gggtcggacc ggccagcgtc gcccggtcga
     1201 cggggctcag ccggctcgtg ggtagagcga ctggatgttg ctcgggacga ggaacccgat
     1261 caggaagaag gcgtccggga tcagcgtcga gcggaagaag gcggcggtcg cggatccgtc
     1321 gagcccgccc cagaagtcgc gcaggaacgg cagctcctgg ggatcgggcg cgtagcccgg
     1381 cagccggaag aacgagtcga ggatgatcag caccgcgccg aacacgatcg ccgcctggag
     1441 caggcccagg atgccgccca ggatctcgtc ggcgaagcgc gccctctgga acagctgctg
     1501 cggccggtag tagctctgca cgaccagcgc gaaggcgacc gccgcagccg cgaagaccgc
     1561 cccgaatccg atcatgtagc tgtacggcct ggggaactgc gtccagttgt cggcgaggaa
     1621 ccggccgagc ggatcggcca ggttggccgc gaacaggaac gagaacagga tcgagccgat
     1681 cccgatcagc cggcggatgg tcccctgcgc gaacccgagc acgaagaatc cgatgaagta
     1741 gaggacgatc agcaggtcga cggtgcggat cccgccaagg aactccccga agtccacgca
     1801 tctccctcca tgatcaccgc cccgcggccg gtgccgaagc cgcgcaaggg tagcagcggg
     1861 cctca
//
LOCUS       DATDDI010000707         3399 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_660254, whole genome shotgun sequence.
ACCESSION   DATDDI010000707 DATDDI010000000
VERSION     DATDDI010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660254"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VIU37_10245"
     CDS             <1..445
                     /locus_tag="VIU37_10245"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEY6014381.1"
                     /translation="YELFACDPALADTAAFCAAYGFPPEDSANTIVVIGKSDPPRFAA
                     CVTLAPYRLDVNRSVRDRLGTRKASFAPADETARLTGMQLGGVTVFGLPPDLPILVDS
                     RVMARDRIILGGGSRSWKVISTPAILRALPNVEVVEGLATDPRPA"
     gene            495..953
                     /locus_tag="VIU37_10250"
     CDS             495..953
                     /locus_tag="VIU37_10250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014382.1"
                     /translation="MTDQPRDDPERSLTPPTADPPPTPVDPDADPTPPRPPRVTTGPV
                     QYRGEELQPERGPGLGCFRFQLVVLAVFVVLTPLSVYWDWSPTVSAALLFAVIVLLLV
                     TGQTIIFLLRLVAAERRGRRRPLASGTPTVGELEDSAAAQPVEPGGPVQQ"
     gene            1002..1328
                     /locus_tag="VIU37_10255"
     CDS             1002..1328
                     /locus_tag="VIU37_10255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014383.1"
                     /translation="MPVLATYFSVRRGRDPFFKFFMRTIFPKQVKEYEERFGIRFIGW
                     FNVAHGWDFDNVIRLDLPDYATLDRLEADEATRALGHRAGEWIFERHHSMFLRERMGP
                     DLVYHP"
     gene            1356..2291
                     /locus_tag="VIU37_10260"
     CDS             1356..2291
                     /locus_tag="VIU37_10260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014384.1"
                     /translation="MDSHNDLLGELAADADLERADFIRQSAEQLHRFLDHHRARISAI
                     GGLTLIDDEPDYLSVAPDLTFRSRSRYLDDETGEWVSETEVVESASELVELYNPADIY
                     AAFTEAAREAAGLPPEPTAEDELLESAGIAPEATIKFGADPYAAAADSWAAGQPISLS
                     EDDDESAARRLYDLALEYQERSQRNEARLLEDFESASAGLIALIGDLIIVDDDDERLT
                     LTAAGTFRAEVIPEDSGESWRTLDGAEELVEFYDPTDVFGDLADALAEAFPAVAPEAG
                     GAAGNAEAGGAEPDGEAPSGDAAADETAAEDEPSA"
     gene            2294..3154
                     /locus_tag="VIU37_10265"
     CDS             2294..3154
                     /locus_tag="VIU37_10265"
                     /inference="COORDINATES: protein motif:HMM:NF013161.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEY6014385.1"
                     /translation="MRLASAELVDSREILPGQWLQAYHAPDLAVGSRAGQFVHVRAGD
                     FSGLVLRRPFSLNTTDPATGIVTLHFRVVGRGTEWFTRLRPGDAIDLLGPLGRPFEVD
                     PRSQHLLLIAGGLGIAGVRMLADEAIRAGRQVTLLFGAASARDVYPSSLLPDEVEYVV
                     ATDDGSLGHHGFVTELVTDYEAWADQAFACGPTPMLAALAQLIAGRRDRLGVAKLGRK
                     RGGGRTVAAGSPAARRKSFLQVSMEQNMGCAVGACLGCVVMTTSGTPQRVCREGPVFA
                     YDEIAWEGGW"
     gene            3171..>3399
                     /locus_tag="VIU37_10270"
     CDS             3171..>3399
                     /locus_tag="VIU37_10270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014386.1"
                     /translation="MKPKRRAMTATVRPAAGKRASLPRERPRADGARPAALGTTKIRP
                     AVQSGARGASPVVEIAPSQVDLRVDLGRGLVL"
BASE COUNT          469 a         1246 c         1210 g          474 t
ORIGIN      
        1 ctacgagctc ttcgcgtgcg atccggccct cgccgacacg gccgcgttct gcgccgccta
       61 cggcttcccg ccggaggatt cggccaacac gatcgtggtg atcggcaagt cggacccgcc
      121 tcggttcgcc gcgtgcgtga cgctggcgcc ataccgcctc gacgtgaacc ggtcggtgcg
      181 cgaccggctc ggcacccgca aggcctcctt cgccccggcc gacgagaccg cgcggctcac
      241 cgggatgcaa ctcggcgggg tgacggtctt cggcctgccg cccgacctgc cgatcctggt
      301 cgactcgcgg gtcatggccc gggaccggat catcctgggc ggcggctcgc ggtcgtggaa
      361 ggtgatctcg acgccggcca tcctgcgggc gctcccgaac gtcgaggtcg tcgagggact
      421 cgccacggac ccgcgtcccg cctgaaccgg gcctgcgcca cggtcgatgc cggacgcgcg
      481 tatcgttgcg cctcgtgacc gatcagcccc gcgacgaccc cgaacgctcc ctgacgccac
      541 cgaccgccga cccgccaccg acccccgtgg accccgacgc cgacccgacc ccgccgcgtc
      601 caccgcgagt cacgaccgga cccgtccagt accgcggcga ggagctccag cctgagcgcg
      661 ggccgggcct cggctgcttc cgcttccagc tcgtcgtgct cgccgtgttc gtcgtcctga
      721 cgccgctgag cgtctactgg gactggtcgc cgaccgtgag tgccgccctg ctcttcgcgg
      781 tgatcgtgct gctcctggtg accggccaga cgatcatctt cctgctccgg ctggtcgccg
      841 cggaacggcg cggacggcgc cggccgctgg cgagcgggac gccgaccgtc ggtgagctgg
      901 aggattccgc cgcagcccag ccggtcgagc cgggagggcc cgtgcaacaa taggtgcggg
      961 ctgccctgtg gcacccgccc acgagggagg accaccgaac cgtgcccgtg ctcgcgacct
     1021 acttcagtgt tcgccgaggc cgcgatccgt tcttcaagtt cttcatgcgc accatctttc
     1081 cgaagcaggt gaaggagtac gaggagcgct tcgggatccg gttcatcggc tggttcaacg
     1141 tcgcccacgg ctgggacttc gacaacgtga tccggctgga cctgcccgac tacgcgacgc
     1201 tcgaccggct cgaggccgac gaggccaccc gggccctcgg ccaccgggcc ggcgaatgga
     1261 tcttcgaacg ccaccactcg atgtttctgc gagaacggat gggtccggat ctcgtctacc
     1321 acccgtagac ttcccgacag cacggaggcg accccatgga tagccataac gatctgctcg
     1381 gggagctcgc ggcggatgcc gatctcgagc gagccgactt catccggcag tcggcggagc
     1441 agctccaccg cttcctcgat catcaccgcg cgcgcatctc ggccatcggc ggcctgacgc
     1501 tgatcgacga cgagccggac tacctgtccg tcgcgccgga cctgacgttc cggagccgaa
     1561 gccggtatct cgacgacgag accggggagt gggtcagcga gaccgaggtg gtcgaatccg
     1621 cctccgagct cgtggagctc tacaaccccg ccgacatcta cgccgccttc accgaggccg
     1681 cccgcgaggc cgccggcctg ccgcccgagc cgaccgccga ggacgagctc ctggagagcg
     1741 cgggcatcgc gccggaggcg acgatcaagt tcggcgcgga cccgtacgcc gccgcggccg
     1801 actcgtgggc cgccgggcag ccgatctcgc tgagcgagga cgacgacgag tccgccgcgc
     1861 gccggctgta cgacctcgcg ctcgaatacc aggaacgcag ccagcgcaac gaggcgcgcc
     1921 tgctcgagga cttcgagtcc gcctcggcgg ggctgatcgc gctgatcggc gacctcatca
     1981 tcgtggacga cgacgacgag cgactcaccc tgaccgccgc cggcacgttc cgggccgagg
     2041 tcatccccga ggattcgggc gaatcgtggc ggacgctcga cggggccgag gagctggtcg
     2101 agttctacga cccgaccgac gtgttcggtg acctggccga cgcgctggcc gaggcgttcc
     2161 cggccgtcgc gcccgaggca ggaggcgcgg cagggaacgc ggaggccggc ggggccgagc
     2221 ccgacggcga ggcgccgtcc ggggatgcgg ccgccgacga gaccgccgcc gaggacgaac
     2281 ccagcgcgtg accatgcggc tggcgtcggc ggagctggtc gacagtcgcg agattctgcc
     2341 gggccagtgg ctgcaggcct accacgcccc cgacctggcg gtcgggtccc gggccggcca
     2401 gttcgtccac gtccgcgccg gcgacttctc cgggctggtc ctgcggcggc cgttctcgct
     2461 caacaccacg gacccggcga ccgggatcgt gacgctccac ttccgggtcg tcggacgggg
     2521 aacggaatgg ttcacccgcc tgcggcccgg tgacgccatc gacctgctgg gtccgctcgg
     2581 ccggccgttc gaggtcgacc cccgcagcca gcatctcctg ctgatcgccg gcggcctcgg
     2641 gatcgccggc gtccgcatgc tggccgacga ggcgatccgt gccggccggc aggtcaccct
     2701 gctgttcggg gcggcgtccg cacgcgacgt ctatccgtcg agcctgctcc cggacgaggt
     2761 cgagtacgtc gtcgccaccg acgacgggag cctcggtcac cacggcttcg tgaccgagct
     2821 cgtcaccgac tacgaggcct gggccgacca ggcgttcgcc tgcggtccaa ccccgatgct
     2881 cgcggcactg gcgcaattga tcgccggccg ccgcgatcgg ctcggggtgg cgaagctcgg
     2941 gaggaagcgc ggtggcggca ggaccgtcgc cgccgggtcg ccggccgccc ggcgcaagtc
     3001 gttcctgcag gtgtcgatgg agcagaacat gggttgcgcc gtgggggcct gcctgggctg
     3061 cgtggtgatg acgacctcgg gcacaccgca gcgcgtctgc cgcgaggggc cggtgttcgc
     3121 ctacgacgag atcgcctggg agggcggctg gtgagcggag cggcgcggcc gtgaagccga
     3181 agcggcgggc gatgaccgcg acggtgcggc cggcggccgg gaagcgtgcc tccctgccgc
     3241 gcgagcgccc gcgcgccgac ggcgcacgac cggcggcgct cgggacgacg aagatccggc
     3301 ccgccgttca gtcgggggcg aggggggcct cgccggtggt cgagatcgcc ccgagccagg
     3361 tcgacctgcg cgtggatctc ggtcggggac tggtcctgc
//
LOCUS       DATDDI010000708         2373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_56809, whole genome shotgun sequence.
ACCESSION   DATDDI010000708 DATDDI010000000
VERSION     DATDDI010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56809"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VIU37_10275"
     CDS             complement(<1..261)
                     /locus_tag="VIU37_10275"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY6014387.1"
                     /translation="MTVTSRPSVRTHAEARPAFDPAVVRRDFPILDQEINGHRFVYLD
                     SASSSQKPQVVIDAMDDYYRSYNANVHRGIYTIGEKATAEYEK"
     gene            complement(277..1185)
                     /gene="sufC"
                     /locus_tag="VIU37_10280"
     CDS             complement(277..1185)
                     /gene="sufC"
                     /locus_tag="VIU37_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012726854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEY6014388.1"
                     /translation="MTDTTSASPDQHLVIRDLRVAPVAHPEAEILQGINLTVGKGEVH
                     AIMGPNGSGKTTLAYALMGHPAYKVTGGEVIWKGRDLLTLSPDKRARLGLFLAFQYPI
                     AISGLSVASFIRSALNAKLQGVDKNADIDPTDPMRGGITMRDFRNKMREKMALLKMDE
                     GIAARYVNEGFSGGEKKRLEMLQMAVLEPEMAILDETDSGLDIDALRIVAEGVNAMLN
                     PNLGVLLITHYQRLLNYITPDVVHVLAQGRIVKSGGKDLALRLEDEGYGPVLREAGLS
                     PDVPDEALLMPKEPGAADLEPVEAAR"
     gene            complement(1182..1649)
                     /locus_tag="VIU37_10285"
     CDS             complement(1182..1649)
                     /locus_tag="VIU37_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016098981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY6014389.1"
                     /translation="MAFSTKGEYGVRLMVQLGRHYGAGPASLAEIAAEEDLPRAYLEQ
                     LVINLREAGLVTSTRGARGGYELAHAPDSITMAEVLRALEGPVAPMLCASEDPGHVGC
                     DRSARCTVNLLWVRVRDAVTGALDSMTLADLVPPRSTAPATQPTTLQGALTSS"
     gene            complement(1798..>2373)
                     /locus_tag="VIU37_10290"
     CDS             complement(1798..>2373)
                     /locus_tag="VIU37_10290"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY6014390.1"
                     /translation="EVLAILGSQAALAMANAYLVEEVSVLAIHDGLTGLYNRRHFDAA
                     ADLAIARLRRRVPAGTMAAIMFDLDRFGEFNRLHGHLAGDAALRLFGGILHERLRSVD
                     LVARYGGEEFFVILEDSGVADAARVAEEVRRQLEARPVPGPDGEELHVTVSAGCAEIG
                     RSDATMEELIGRADAALFAAKRAGRNRVVAA"
BASE COUNT          341 a          773 c          884 g          375 t
ORIGIN      
        1 cttctcgtac tccgcggtcg ccttctcgcc gatggtgtag atgccgcggt ggacgttggc
       61 gttgtaggac cggtagtagt cgtccatcgc gtcgatgacg acctgcggct tctgcgacga
      121 cgaggccgag tcgaggtaga cgaagcggtg gccgttgatc tcctggtcga ggatcgggaa
      181 gtcgcggcgg acgaccgccg gatcgaacgc ggggcgcgcc tcagcgtgcg tccggaccga
      241 agggcgggag gtgacggtca cggtaggtcg gcccgcctag cgggccgcct ccaccggctc
      301 gaggtcggcg gcacccggct ccttgggcat caacagggcc tcgtccggga cgtcgggcga
      361 gagcccggct tcgcgcagga ccggaccgta gccctcgtcc tcgagacgga gcgccaggtc
      421 cttgcccccg ctcttgacga tccggccctg ggccaggacg tggacgacgt ccggcgtgat
      481 gtagttgagc aggcgctggt agtgagtgat cagcagcacg cccaggttcg ggttgagcat
      541 cgcgttgacg ccctcggcga cgatccgcag cgcgtcgatg tctaggccgg agtcggtctc
      601 gtcgaggatc gccatctccg gctcgaggac cgccatctgg agcatctcga gccgcttctt
      661 ctcgccgccg gagaacccct cgttgacgta ccgcgcggcg atgccttcat ccatcttgag
      721 cagcgccatc ttctcccgca tcttgttgcg gaagtcgcgc atggtgatcc cgccgcgcat
      781 cgggtcggtg ggatcgatgt cggcgttctt gtcgacgccc tggagcttgg cgttgagggc
      841 cgagcggatg aagctcgcca cgctcaggcc ggagatcgcg atcgggtact ggaaggcgag
      901 gaagagcccg agccgcgctc gcttgtcggg cgacagcgtg agcaggtcgc gacccttcca
      961 gatcacctcg ccgccggtga ccttgtaggc cgggtggccc atcagggcgt aggccagggt
     1021 cgtcttcccc gagccgttgg ggcccatgat cgcgtggacc tcgcccttgc cgacggtcag
     1081 gttgatcccc tggaggatct cggcttcggg atgggcgacc ggcgcgacac gcaggtcgcg
     1141 gatgacgagg tgctggtccg ggctggcgct ggtggtgtcg gtcacgagct ggtcaaggct
     1201 ccttgcaggg tggttggctg ggtggcagga gcggtggatc gcggcgggac gagatccgcg
     1261 agcgtcatcg agtcgagcgc gccggtgaca gcatcgcgca cccggaccca gagcaggttg
     1321 acggtgcagc gggcggaccg atcgcagccg acgtggcccg ggtcctcgct ggcgcagagc
     1381 atcggggcga ccggaccctc gagcgcgcgg aggacctcgg ccatggtgat cgagtcgggc
     1441 gcgtgggcga gctcgtagcc gccacgggcg ccgcgcgtgc tggtcacgag gccggcctca
     1501 cgcaggttga tcacgagctg ctcgagatag gcgcgcggaa ggtcctcctc ggcggcgatc
     1561 tcggcgaggg aggccggacc ggcgccgtaa tggcgcccga gctgcaccat caggcgcacg
     1621 ccgtactcgc ctttcgtgct gaaggcgatg gcgccgctgc cgtggaatgg cggccgttgg
     1681 gccggaaggg tcgtgacggt ggaggtcaga agagcgtcct caatcccgag tgaattcgtc
     1741 gggattgagt gtagggccga ggcggccgag cgtcaacgcg tcgcgtcgtc cgttgagcta
     1801 ggcggcgacc acccggttgc ggcccgcccg cttggcggcg aacagggcgg cgtcggcgcg
     1861 gccgatcagc tcctccatcg tcgcgtccga tcggccgatc tcggcgcatc cggcactcac
     1921 cgtcacgtgc agctcctcgc cgtccggacc ggggacgggg cgcgcttcca gctggcggcg
     1981 aacctcctcg gccacgcggg cggcgtcggc aacgccggaa tcctccagga tcacgaagaa
     2041 ctcctcgccg ccgtagcggg cgaccaggtc gaccgagcgc aaccgctcgt gcaggatccc
     2101 tccgaacagt cgcagcgccg cgtcgccggc gaggtggccg tggagccggt tgaactcccc
     2161 gaagcgatcg aggtcgaaca tgatcgcggc catggtcccg gcggggacgc ggcgccgcag
     2221 gcgggcgatc gccaggtcgg ccgcggcgtc gaagtgtcgc cggttgtaga gcccggtcag
     2281 accgtcgtgg atcgcgagca ccgagacctc ctccacgagg taggcgttcg ccatggccag
     2341 cgccgcctgc gacccgagga tggccagcac ctc
//
LOCUS       DATDDI010000709         1691 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_140235, whole genome shotgun sequence.
ACCESSION   DATDDI010000709 DATDDI010000000
VERSION     DATDDI010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140235"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VIU37_10295"
     CDS             <1..186
                     /locus_tag="VIU37_10295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014391.1"
                     /translation="RTGRLDGLLGAIADTAGIDPASTVAYLCGNPAMIAAVEPRLAAL
                     GIPGDAIRTEQYWTAPR"
     gene            351..>1691
                     /locus_tag="VIU37_10300"
     CDS             351..>1691
                     /locus_tag="VIU37_10300"
                     /inference="COORDINATES: protein motif:HMM:NF024994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY6014392.1"
                     /translation="MAALSTAPAPALAPDPSSDFLHVERHPLDAFFHPRSIAVIGATE
                     KAGSVGRTILWNLLSSPFGGTVYPVNPTRPAILGVKAYSSIGAIGEPVDLAVIVTPAK
                     SAPGLMEECGQAGVKGVVIISAGFKEIGPEGVELERQVLETARRYGIRVIGPNCLGIM
                     NPVGAMNATFAVGIAKPGRVGFISQSGALLTAILDWAAMENVGFSSIVSLGSMLDVGW
                     GDVIDYLGDDPNTDSIVIYMETIGDARSFLSAARAVALTKPIIVIKPGRTAQAAKAAA
                     SHTGSLTGSDDVLDAAFRRAGVLRVDSISELFMVSEILAKQPRPAGRRLSIVTNAGGP
                     GVIATDALITGGGELTSLTPETMERLNAVLPAVWSHNNPIDIIGDAPPDRYAKALEIA
                     AADPDTDGLLVILTPQAMTDPTATAKALAVYAKIPGKPVLASWMGGTDVLEGSAI"
BASE COUNT          249 a          630 c          569 g          243 t
ORIGIN      
        1 cggaccgggc ggctggacgg cctcctcggc gccatcgccg acaccgcggg catcgacccc
       61 gcttcgacgg tcgcctacct gtgcggcaat cccgccatga tcgccgcggt cgagccgcgg
      121 ctcgcggctc tcgggatccc cggggacgcg attcgaacgg agcagtactg gacggcgccg
      181 cgctagcgct cgggccgaat ccgggccaaa cggcccgtcc ccccggccac ccagcccttg
      241 cgcgaatcgg cgtggtaggc gagggtgaca ccgtgcgccg cgcatcgtgg cgaccacgcc
      301 gtgctgccgg cagaacctgc gtgccgaccg cctacactcg aggcaaatcg atggctgccc
      361 tttcgaccgc gccagcgccg gcgctggctc ccgacccttc ctccgacttc ctccacgtgg
      421 agcgccaccc gctcgacgcg ttcttccatc cgcggtccat cgcggtcatc ggcgccacgg
      481 agaaggcggg ttcggtcggg cggacgatcc tctggaacct gctgtcctcc ccgttcggcg
      541 gcacggtcta cccggtcaat cccacgcgcc cggcgatcct cggcgtcaag gcctacagct
      601 cgatcggggc gatcggcgag ccggtcgacc tggccgtgat cgtcaccccg gcgaagtcgg
      661 cgccgggcct catggaggag tgcgggcagg ccggcgtcaa gggcgtggtc atcatcagcg
      721 ccgggttcaa ggagatcggc ccggagggcg tcgagctcga gcgccaggtc ctggagaccg
      781 cgcggcggta cggcatccgc gtgatcgggc cgaactgcct cgggatcatg aacccggtcg
      841 gcgccatgaa cgcgaccttc gcggtcggga tcgccaagcc gggccgggtc ggcttcatct
      901 cgcagtccgg cgcgctgctg accgcgatcc tcgactgggc ggcgatggag aacgtcggct
      961 tcagctcgat cgtctcgctc ggctcgatgc tcgacgtcgg ctggggcgac gtcatcgact
     1021 acctcggcga cgacccgaac accgactcga tcgtgatcta catggagacg atcggcgacg
     1081 cgcggtcctt cctgtcggcc gcgcgggcgg tcgccctgac caagccgatc atcgtgatca
     1141 agcccggccg gacggcccag gcggccaagg ccgcggcctc gcatacgggt tcgctcaccg
     1201 gctccgacga cgtcctcgac gccgcattcc ggcgggccgg cgtcctgcgc gtcgactcga
     1261 tcagcgaact gttcatggtc tcggagatcc tggccaagca gccgcgcccg gccggtcggc
     1321 ggctgtcgat cgtgaccaac gccggcggcc cgggggtcat cgcaaccgat gcgctcatca
     1381 ccggcggcgg cgagctgacc agcctgaccc ccgagacgat ggagcggctc aacgccgtcc
     1441 tgccggcggt ctggagtcac aacaacccga tcgacatcat cggcgacgct ccgccggatc
     1501 ggtatgccaa ggccctggag atcgcggccg ccgacccgga caccgatggc ctgctggtca
     1561 tcctcacgcc ccaggcgatg accgacccga ccgccaccgc caaggcactc gccgtctacg
     1621 cgaagatccc gggcaagccg gtcctcgcct cgtggatggg cggcacagac gtgctcgaag
     1681 gctccgcgat c
//
LOCUS       DATDDI010000710         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_15290, whole genome shotgun sequence.
ACCESSION   DATDDI010000710 DATDDI010000000
VERSION     DATDDI010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15290"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1143
                     /locus_tag="VIU37_10305"
     CDS             <1..1143
                     /locus_tag="VIU37_10305"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY6014393.1"
                     /translation="GETLPLPAGLGRGEPASPETALAEERRLCYVAMTRARDELILCH
                     AADYGGARARRVSPFVLEALDLPTAAGVPGAGARTPSPAERLAGFEAVAAPVAAADGP
                     ITEPLSLSFYQIDDYLTCPLKFKYAHVLRVPLAPHHAIIYGAALHKAVQLFHVRHAKG
                     YVMSEAELDEVFESAWSNEGFVSRDHEEARLEAGRAALRRFRSAQLAPDAVIPTYVER
                     EFSFSLGGDRVRGRWDRVDIEPAEATAGATAGIASPAASADVVNPTLGMLGPERVTIT
                     DYKSSDVRDPAKARQRARESLQLQIYAMGFEAMTGRLPDAVALHFLESGLIGRVPVDP
                     GRLAKARDKIKRAAAGMRARDYTPRPDYLACTYCAFRDICPASVAR"
     gene            1233..1679
                     /locus_tag="VIU37_10310"
     CDS             1233..1679
                     /locus_tag="VIU37_10310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014394.1"
                     /translation="MDRLVWRFRPWTASGSGEALDSLVMERRDRLANLGFFAAAAIVW
                     VLVGLVVTTRDPVADPGAGFIGAALIGLAIALTLVPLLWLAVFGRHRMIAYRGDWLRA
                     VRRSAWVGIVVAVLIVLRIQGLLELPIALFMMALAVIAEATLSAER"
BASE COUNT          228 a          636 c          635 g          251 t
ORIGIN      
        1 ggcgagacgc tgccgctgcc ggcaggcctc gggcgcggcg agccggcgtc gccggagacg
       61 gcgctcgccg aggagcgccg gctgtgctac gtcgcgatga ccagggcgcg cgacgagctg
      121 atcctgtgcc acgcggcgga ctacggcggc gcacgggcgc gacgcgtctc gccgttcgtc
      181 ctcgaggcgc tcgacctccc gaccgccgcg ggcgttcccg gcgccggagc gcggacgccc
      241 agcccggccg agcggctggc ggggttcgag gcggtcgccg cgcccgtggc cgcggccgac
      301 ggccccatca ccgagccgct gtcgctgagc ttctaccaga tcgacgacta cctgacctgt
      361 ccactcaagt tcaagtacgc gcacgtgctg cgggtcccgc tcgcgccaca ccacgcgatc
      421 atctatggcg cggcgctcca caaggccgtc cagctgttcc acgtccgcca cgcgaagggc
      481 tacgtgatga gcgaagccga gctcgacgag gtgttcgagt cggcctggtc gaacgagggc
      541 ttcgtgagcc gcgaccacga ggaggcgagg ctggaggccg gacgggccgc cctccgccgc
      601 ttccggtcgg cgcaacttgc gccggacgcc gtgatcccga cgtacgtcga acgcgagttc
      661 agcttcagtc tcggtggcga tcgggtccgc ggccgctggg atcgcgtgga catcgagccc
      721 gccgaggcga ctgccggcgc gacggcaggc atcgcgtcgc ccgccgcgag cgccgacgtc
      781 gtcaacccga ccctgggcat gctcggcccc gagcgggtga cgatcaccga ctacaagtca
      841 tccgacgtgc gcgacccggc caaggcccgc cagcgcgccc gggaatcgct ccagctccag
      901 atctacgcga tgggcttcga ggcgatgacc ggccggctgc ccgacgcggt ggcactgcat
      961 ttcctcgagt ccggcctcat cgggcgcgtg ccggtggatc cgggacggct ggccaaggcg
     1021 cgcgacaaga tcaagcgggc ggcggcgggg atgcgggcac gcgactacac gccacgaccc
     1081 gactacctcg cctgcaccta ctgcgccttc cgcgacatct gcccggcgag cgtggcccga
     1141 tagggcattc gcccgactcg acggcgcgcg cgaccgggcg catcgttccc gaccccgacc
     1201 ggatcggggc acgttgggag cgcgcatcga cgatggaccg cctggtctgg cgattccggc
     1261 cgtggaccgc gtccggcagc ggcgaggccc tagactcgct cgtcatggag cggcgcgacc
     1321 ggctggcgaa cctcggcttc ttcgcggccg ccgcgatcgt ctgggtactc gtcgggttgg
     1381 tggtgaccac ccgggatccg gtcgcggatc ccggcgccgg gttcatcggc gccgcgctga
     1441 tcggattggc gatcgccctg acgctcgtgc cgctcctgtg gctggccgtc ttcggccggc
     1501 atcggatgat cgcctaccgc ggggactggc tgcgggccgt ccgtcggtcg gcctgggtcg
     1561 gcatcgtcgt ggcggtcctg atcgtgctgc ggatccaggg cctgctcgag ctgccgatcg
     1621 ccctgttcat gatggcgctg gcggtcatcg ccgaggcgac gctgtccgcg gaacgctgac
     1681 gacgcccggt cggggcgcac gctaggctga cgcggccaac ccttcgccgc gcggagatct
     1741 cgtgacgacc
//
LOCUS       DATDDI010000711         3445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_181790, whole genome shotgun sequence.
ACCESSION   DATDDI010000711 DATDDI010000000
VERSION     DATDDI010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3445
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181790"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VIU37_10315"
     CDS             <1..275
                     /locus_tag="VIU37_10315"
                     /inference="COORDINATES: protein motif:HMM:NF014225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014395.1"
                     /translation="ADEIVGEVPILDLIRSGEVRLVVNTPTPRSGVVRDAAEIRHAAT
                     AEGILCLTAIETAVAAAEALDPAIAERLAEVRSLDSWVPSGRAVPA"
     gene            complement(312..1676)
                     /locus_tag="VIU37_10320"
     CDS             complement(312..1676)
                     /locus_tag="VIU37_10320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014396.1"
                     /translation="MISDRLHRLAAGIAGALVLALVLPASAAAHSLNTTYESRLPLAV
                     YLVGAAMTVALSFAFVIVRDVRAAAPPATGSGSLPPAPLRIALRTIGLLGWAWIMAQG
                     IAGGSSDGSVATLFLWVYGWVGVAIISAVAGPIWHFLDPFSTLHDLGSWLFGRAGLAS
                     WEPAGYPERFGRWPAVAAFAAFVWLELVALAGASTLFVVLLGYSAYTLAMMAQFGRDT
                     WRAHGEAFTVWFRLLGRLAPLELADEDGRVRRRPFASGLLAGGWTAADIALVALGVGS
                     ILFDGLSQTQVFFDLFGAPGLLVKTLLLAAFLGIIVVAAFAVTRTVGLAATGAGLLPI
                     ALGYLVAHYLTYLLIDGQRIVIAVSDPFQKGWDLFGTAFYSPSGAFLPPGLVWTLQLA
                     AVVGGHMLGAWGGHVVAAESARPGLGTRALRMLQLPLAIVMVGLTTLTLWSLGQAVVV
                     TPAG"
     gene            complement(1676..2296)
                     /locus_tag="VIU37_10325"
     CDS             complement(1676..2296)
                     /locus_tag="VIU37_10325"
                     /inference="COORDINATES: protein motif:HMM:NF016149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HEY6014397.1"
                     /translation="MSRHPTGLRRLLGAGILAAALLVLAIPSVASAHADLQSSDPPAG
                     AVVVGPFKGPVVMTFTESLAVGSKADLYGPGHQLVASATIDAGTMTISPPSPLPAGDY
                     AVEWVSIADDGDLLRGTLAFSVAAPSPSAGPTATDVPSAPPSVEPSIESSSPGASPSG
                     EVATPSPSPGPTTGTGGTGSDVLLPIVVVLIVAAAGAFYLVRRNRP"
     gene            2418..>3445
                     /locus_tag="VIU37_10330"
     CDS             2418..>3445
                     /locus_tag="VIU37_10330"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY6014398.1"
                     /translation="MATTVPEVVFSDQRLANGLRVIVAEDHLAPVVAINLWYDVGSKH
                     EVAGKTGFAHLFEHVMFQGSRHVGKAEHVALVQAAGGTMNGSTWLDRTNYFETMPAHQ
                     MELGLWLEADRMATLLDALSQENLDNQREVVKNEKRWSYDNRPYGSWQEKLQAHLFPP
                     EHPYHHSTIGSMDDLDAASLEDVSDFFRTYYAPNNAVLSVVGDVETADVLAAAERFFG
                     RIPANPDIPALGDLSLPMTLGGERRETVYDRVPLPRVHLGFRAPAYGDTRLDALELAG
                     QILAGGKGSRLNRRLVREERIAQDVVLFTLGFVGGASICAGWATVRPGVDVARVGAAF
                     NDELARLTT"
BASE COUNT          546 a         1253 c         1242 g          404 t
ORIGIN      
        1 cggccgacga gatcgtcggg gaggtcccga tcctcgacct gatccggtcc ggcgaggtac
       61 ggctggtggt caacaccccg acaccgcgct cgggcgtggt ccgcgatgcc gccgagatcc
      121 gccatgccgc cactgccgaa gggatcctct gcctgaccgc catcgagacc gcggtcgccg
      181 cggcggaggc gctcgatccg gccatcgccg agcggctcgc cgaggtccgg tcgctcgact
      241 cgtgggtgcc gagcgggcgg gccgtgcccg cctagggcgc cacgcccccg cggacgcagg
      301 cggcccggcg ctcagcctgc cggcgtcacc acgacggcct gcccgagcga ccagagcgtc
      361 agcgtcgtca ggcccaccat cacgatcgcc agcggcagct ggagcatccg gagcgcgcgc
      421 gtcccgagcc cgggccgggc ggattcggcg gcgacgacgt ggccgcccca cgccccgagc
      481 atgtgcccgc cgacgacggc cgcgagctgc agcgtccaga cgagaccggg tggcaggaac
      541 gccccgctcg gcgagtagaa cgccgtcccg aacaggtccc aacccttctg gaacggatcg
      601 gagacggcga tgacgatccg ctggccgtcg atgagcaggt aggtgaggta gtgcgcgacg
      661 aggtagccga gggcgatcgg gagcagcccg gcgcctgtcg cggccagccc gaccgtccgg
      721 gtgaccgcga acgccgccac cacgatgatc ccgaggaacg ccgccagcag caacgtcttg
      781 accagcaggc ccggcgcgcc gaacaggtcg aagaagacct gcgtctgcga caggccgtcg
      841 aacaggatgg agccgacccc gagcgccacg agcgcgatat cggcggcggt ccagccgccc
      901 gccaggagcc cgctggcgaa cggccggcgg cgaacccgtc cgtcctcgtc ggcgagctcg
      961 agcggtgcga gccggccgag caggcggaac cagaccgtga acgcctcccc gtgcgctcgc
     1021 cacgtgtcgc ggccgaactg ggccatcatc gccagcgtgt aggccgagta gccgaggagc
     1081 acgacgaaca gcgtcgacgc gcccgccagg gccaccagct cgagccagac gaacgcggcg
     1141 aacgcggcga cggccggcca tcgtccgaaa cgctccgggt agccggccgg ctcccagctg
     1201 gccaggccgg ctcgcccgaa gagccacgag ccgaggtcgt gaagcgtgga gaacgggtcg
     1261 aggaagtgcc agatcggtcc ggcgacggcc gagatgattg ccaccccgac ccagccgtag
     1321 acccacagga agagcgtcgc cacgctgccg tcgctcgacc cgccggcgat gccctgggcc
     1381 atgatccagg cccatccgag caacccgatc gtgcgcaggg cgatccgcag cggcgcggga
     1441 ggcagcgacc cggacccggt ggccggcggc gccgcagccc gcacgtcgcg gacgatcacg
     1501 aacgcgaacg acagcgcgac ggtcatcgcg gccccgacga gatagaccgc cagcggcagc
     1561 cggctctcgt acgtcgtgtt gaggctgtgc gccgcggccg acgcgggcag gacgagcgcc
     1621 aggacgagcg cgcccgcgat gccggccgcg agacggtgca ggcgatcgga gatcatcaag
     1681 gacggttgcg ccgcaccagg tagaacgccc ccgccgccgc gacgatgagg acgacgacga
     1741 tcggcaggag cacgtcgctg ccggtcccgc cggtccctgt cgtcgggccg ggcgacgggg
     1801 acggggtcgc gacctcccct gacgggctcg cgcccgggct gctcgactcg atggacggct
     1861 cgaccgatgg cggggccgag ggcacgtccg tcgccgtcgg ccccgccgac gggctcggcg
     1921 ccgcgacgga gaacgcgagc gtcccccgga gcaggtcgcc gtcgtcggcg atgctcaccc
     1981 actcgacggc gtagtcgccg gccggcagcg gcgatggcgg ggagatcgtc atcgtgcccg
     2041 cgtcgatcgt ggccgacgcg acgagctggt ggccgggtcc gtacaggtcg gccttgctgc
     2101 cgacggccag cgactcggtg aaggtcatca cgaccggtcc cttgaacggt cccaccacca
     2161 cggcaccggc aggcgggtcg gacgactgga ggtcggcatg ggcgctcgcc accgacggga
     2221 tcgccaggac gaggagcgcg gcggcgagga ttccggcgcc cagcagccgg cgcagcccgg
     2281 tggggtggcg tgacatcgcg gggagtctac ggaaaaagcc ggccggtcgc tttcgaaccc
     2341 gacgcggccg gaggcgctac gatcgtcgcc aacctgcctg ccgcggccgc tctgccgccc
     2401 gtacctcgag gttccgcgtg gcaaccaccg ttcctgaggt cgtcttcagc gaccagcgtc
     2461 tcgccaacgg tctgcgcgtc atcgtcgcgg aagaccacct ggccccggtc gtcgcgatca
     2521 acctctggta cgacgtcggc tccaagcacg aggtcgccgg caagaccggg ttcgcgcacc
     2581 tcttcgagca cgtgatgttc cagggctcgc gtcatgtcgg caaggccgag cacgtcgccc
     2641 tcgtccaggc ggccggcggc acgatgaacg gctcgacctg gctggaccgg acgaactatt
     2701 tcgagacgat gcccgcccac cagatggagc tcggcctgtg gctcgaggcg gaccggatgg
     2761 cgaccctgct cgacgcgctg agccaggaga acctcgacaa ccagcgcgag gtcgtcaaga
     2821 acgagaagcg ctggtcgtac gacaaccggc cgtacggctc gtggcaggag aagctccagg
     2881 cccacctgtt cccgccggag cacccgtacc accactccac gatcgggtcg atggacgatc
     2941 tggacgccgc ctcgctcgag gacgtcagcg acttcttccg gacctactac gcgccgaaca
     3001 acgcggtcct gtcggtggtc ggcgacgtcg agaccgccga cgtcctcgcg gcggccgagc
     3061 ggttcttcgg ccggatcccc gcgaacccgg acatcccggc gctgggcgac ctgtcgctcc
     3121 cgatgacgct gggtggcgaa cgacgcgaaa cggtctacga ccgcgtcccg ctgccgcgcg
     3181 tgcacctcgg cttccgggcg ccggcgtacg gcgacacgag gctggacgcg ctcgagctgg
     3241 ccggccagat cctggccggc gggaagggca gccggctcaa ccggcggctc gtccgcgagg
     3301 agcgcatcgc ccaggacgtg gtcctgttca cgctcggctt cgtcggtggc gcatcgatct
     3361 gcgccggctg ggcgaccgtc cgaccgggtg tcgacgtcgc gcgggtgggg gccgcgttca
     3421 acgacgagct tgcccgcctc acgac
//
LOCUS       DATDDI010000712         2076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_140268, whole genome shotgun sequence.
ACCESSION   DATDDI010000712 DATDDI010000000
VERSION     DATDDI010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140268"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1310)
                     /locus_tag="VIU37_10335"
     CDS             complement(<1..1310)
                     /locus_tag="VIU37_10335"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6014399.1"
                     /translation="MTEPEPAPVTRHTAVRERPGLRRFFLACGAAALVAGLLALYLAP
                     PHEAALAVLLQTTLLPASILFLVAVNQRGSGPLLGLTVVLLWAEALLTAALFTIGVSF
                     AIVIPLIGIGIVQPYLRGAATLAVYVGAAVVATISVALFAIGGQPDPLREPALAVVGF
                     AFLAAFALGLVWRAGDRWIKALEAADRELAARIAAEQERERLEVSLRQAQRMEAVGRL
                     AGVVAHDLNNALMAVGGYADFIAGDSRDPEAVENAKKIRGAADRASRMTRQLLVFAGQ
                     SIMRPQVIDVVDFVAGLETDLGKVVGSGVRLEVRHAIASGFVRVDVDRFAEVLRSLAQ
                     RARDAMPDGGSVTVTTTRIDARDGAAARIVVDVTDTGTPIAPEVAERLFDPFLTTGLD
                     SRTGLELAMAFGVVRQSGGEIEVRRGSAGGSTIEIRLPEAAVAP"
     gene            1501..>2076
                     /locus_tag="VIU37_10340"
     CDS             1501..>2076
                     /locus_tag="VIU37_10340"
                     /inference="COORDINATES: protein motif:HMM:NF021982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HEY6014400.1"
                     /translation="MSVRGNRRWIAVLAAVTIGACSGAGGEPSAPGSASQTPGPASSA
                     PDLVSPIPSPAAPGRTEFVAGGTRPVTVHVPAGADPAGAPLLLILHGYSSSGTEMTSW
                     LPLGEAADRRGVVWAYPDGSPDERGMRFWNATDACCAFGSQVDDVAYLTGLIEEIAAR
                     TRIDPDRVYVAGHSNGGFMSHRMACDRADRVT"
BASE COUNT          316 a          721 c          778 g          261 t
ORIGIN      
        1 ttgggcgcaa ccgccgcctc cggcaggcgg atctcgatgg tcgaaccgcc cgccgatccg
       61 cggcggacct cgatctcgcc gccggactgc cgcacgacgc cgaacgccat ggcgagctcc
      121 aggccggtgc gggagtcgag cccggtcgtg aggaacggat cgaagagccg ctcggcaacc
      181 tcgggcgcga tcggcgtgcc ggtgtcggtc acgtccacga cgattctcgc ggccgcgccg
      241 tcgcgagcat cgatccgggt ggtggtgacg gtgacgctgc caccgtcggg catggcgtcg
      301 cgggctcgct gggccaggct gcgcagcacc tcggcgaagc gatccacgtc cacccgcacg
      361 aaaccggacg cgatcgcgtg gcgcacctcg agccggaccc ccgagccgac gactttgccg
      421 agatcggtct cgagaccagc gacgaagtcg acgacgtcga tcacctgggg ccgcatgatc
      481 gactgccccg cgaagacgag gagctggcgg gtcatccggc tcgcccggtc cgccgcgccc
      541 cggatcttct tcgcgttctc gacggcttcc gggtcgcgcg aatcgccggc gatgaagtcc
      601 gcgtaaccgc cgacagccat caacgcgttg ttgaggtcgt gcgccacgac cccggcgaga
      661 cgcccgaccg cctccatccg ctgggcctgg cggagagaga cctcgagacg ctcgcgttcc
      721 tgctcggccg cgatgcgcgc ggcaagctcc cggtcggcgg cctcgagcgc cttgatccag
      781 cgatccccgg cgcgccacac gagcccgagc gcgaaagccg cgaggaaggc gaacccgacg
      841 accgcgaggg caggctcgcg caacgggtcg ggttggccgc cgatggcgaa gagggccacc
      901 gagatcgtgg cgacgaccgc cgcgccgacg tacaccgcga gcgtggcggc gccccgaagg
      961 tagggctgga cgatcccgat gccgatcaac gggatcacga tggcgaacga gacaccgatc
     1021 gtgaacagcg cggccgtcag gagtgcctcg gcccacagga gcacgacggt cagccccagc
     1081 agcgggccgc tgccgcgctg gttgacggcg accaggaaca ggatcgaggc cggcaggagc
     1141 gtggtctgca ggaggacggc cagggccgcc tcgtggggcg gggcgaggta cagcgccagg
     1201 aggcccgcga ccagggcggc ggcaccgcag gcgaggaaga accggcgaag gcccgggcgc
     1261 tcccgcacgg cggtatggcg cgtgactggt gcaggctccg gctcggtcac ggtcgtcccg
     1321 gtctcggcgc tcgtcccccc ggcgtgcgga caggatacgc gacggtcgtg gacggattgc
     1381 agggtcgccg tccacgggaa gccgcccggc accgcacgcc gagaagccgg ccgactggcc
     1441 gaacggctct ggtccgggac ggccaccagg ggcatgcttc ggttctcgga ggaagtgccg
     1501 gtgtcggttc gtgggaatcg tcgatggatc gccgtcctgg cggcggtcac gatcggggcg
     1561 tgttcgggtg ccggcggcga gccgtcggca ccgggatccg cgtcgcagac gccgggaccc
     1621 gcgtcatcgg caccggacct cgtgtccccg atcccgagcc ctgcagcgcc gggacggacg
     1681 gagttcgtcg cgggcggcac ccgcccggtc accgtccacg taccggccgg ggcggatccg
     1741 gcgggagcgc ccctgctgct gatcctccac ggttactcgt cgagcggcac ggagatgacg
     1801 agctggctgc cccttggcga ggcggccgac cggcgcggcg tcgtctgggc ctatccggac
     1861 gggagcccgg atgagcgcgg catgcggttc tggaacgcga cagacgcctg ttgcgccttc
     1921 gggtcccagg tggacgacgt ggcgtacctg accggtctga tcgaggagat cgctgccagg
     1981 accaggatcg atcccgatcg cgtctacgtc gcgggacact cgaacggcgg gttcatgagc
     2041 caccggatgg cgtgcgaccg cgcggacagg gtgacg
//
LOCUS       DATDDI010000713         3199 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_597976, whole genome shotgun sequence.
ACCESSION   DATDDI010000713 DATDDI010000000
VERSION     DATDDI010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597976"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..608)
                     /locus_tag="VIU37_10345"
     CDS             complement(<1..608)
                     /locus_tag="VIU37_10345"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014401.1"
                     /translation="MTAIATPPDHDAGPSVVANEPAAARAPGDSAEAILTCHDLRKRF
                     GDRTAVDGVGFTIRAGETYGLLGPNGAGKTTTISMICGILAADAGEVQVAGVKVDTGT
                     VAAKGAIGYVPQDLAIYPDLSARENLAFFGRLYGLGGAHLRERIAEVLSVIDLADRAD
                     ERTERFSGGMKRRLNIGIGLLHRPRLLVLDEPTVGVDPQSRNA"
     gene            1087..1497
                     /locus_tag="VIU37_10350"
     CDS             1087..1497
                     /locus_tag="VIU37_10350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014402.1"
                     /translation="MRPEAVALCWKAREALIEQAIDWEARPFLERQRLLLDFRVRAGK
                     AVDEWLEILGRLERELVAGPGEAVSPAPLDRLAAFYDHLGDTDSVGHAWRDHELRVVD
                     PRAADVRRLADLLEPVGDLVLAAHGARAGGLGAF"
     gene            1671..2417
                     /locus_tag="VIU37_10355"
     CDS             1671..2417
                     /locus_tag="VIU37_10355"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEY6014403.1"
                     /translation="MNALHLRRLNALQTHRFPDPTSSHETRANAVLRPVVFGANDGLV
                     SNLALVMGVAGANAEPAVIVLAGIAGLLAGAFSMGVGEYISVQSQRELLEFQLAFQRH
                     QLRLAPEQERRILRDIYVGRGLEPDEAARFVDKLFEQPEQATRLLIFEEVGLDERSIG
                     SPLQAGVGSFLAFTLGAAIPLIPYLLASGGLAFFASIAVSSVALLTLGYGISRLTHRS
                     PLYSAVRQLLLGALAAAVTYGAGTLLGATL"
     gene            2496..3137
                     /locus_tag="VIU37_10360"
     CDS             2496..3137
                     /locus_tag="VIU37_10360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014404.1"
                     /translation="MAKLTPKIILEGTRLTHKTDLAFALNEHPRIVGPRRYRYHSPLI
                     SAEWCGFTPVPWGRGPINFEPGGEEEARAMAVFEAWTHLIELQPHYSWIIDRFHLSAK
                     AYQLTAHGYDVDFGWLEPRLQALDVHIVLCTRRDGTWEAARDERLTVSGKPSQYDDLG
                     AFEREQELLRRLASESLLPVLELDTTDGDMDAACDAIADWLTSTGGLWPRPEA"
BASE COUNT          432 a         1177 c         1115 g          475 t
ORIGIN      
        1 gcgttccggc tctgcggatc gacgccgacg gtcggctcgt caaggaccag cagacgcggc
       61 cgatggagca gcccgatccc gatgttgagc cgtcgcttca tgccgccgga gaaccgctcc
      121 gtccgttcgt ccgcgcggtc cgcgaggtcg atgacggaca ggacttcggc gatgcgttcg
      181 cggaggtggg ctccgcccag gccgtagagc cggccgaaga acgccaggtt ctcccgcgcg
      241 ctgaggtccg ggtagatggc caggtcctgg ggcacgtacc cgatcgcgcc cttggccgcg
      301 acggtcccgg tatcgacctt gacccccgcc acctggacct ccccggcgtc ggccgccagg
      361 atgccgcaga tcatgctgat ggtcgtggtc ttgcccgcgc cgttcggccc gagcagcccg
      421 taggtctcgc cggcacggat cgtgaacccg accccgtcga ccgccgtgcg atcgccgaag
      481 cgtttgcgca ggtcgtggca ggtgaggatg gcctcggccg aatcaccggg ggcccgggcc
      541 gccgccggct cgttggcgac gaccgaaggt cccgcgtcat ggtcgggtgg agtcgcgatc
      601 gccgtcaccg tctcatctcc agtcgccgtc agggcgggtt gccggcagcg gacccgagcg
      661 acctggccga cgttgggcgt gatcggcggg cagggtccgt gacgctcgtc attggagcgc
      721 gaacggcgag cccgcaccag agccgtttgg ctcgcccgtc acgggacgtt gtgcgtcggt
      781 gagagcgcga ccaatgtggc cgcggaacga ggggccatgt ggcccgtccg gaatccgtcc
      841 gtatggccct gtacctgacg gccgcgtctg cggagactgt gcaacaagcg catctcgtat
      901 cagcaggggc gagctgagca cgcgatgcgc tttttccatg cctcggacga tccgggcggg
      961 tggcgaccgc cgggtcccgt gggcggaggt cgacacgatg cagcaccgtg ccccagcggc
     1021 gaccggcatc cggatcttcg ccacgcccgc ctcgcaccca tgacctcccc cattcgagcc
     1081 cgccgcgtgc gccccgaggc ggtcgcgctg tgctggaagg cccgcgaagc cctgatcgag
     1141 caggcgatcg actgggaggc ccggccgttc ctcgagcgac agcgcctgct cctcgacttc
     1201 cgggttcgag ccggcaaggc ggtggacgag tggctcgaga tcctgggccg cctcgagcgt
     1261 gagctcgtgg ccgggccggg tgaggcggtc tcaccggcgc cgctcgatcg gctcgccgcc
     1321 ttctacgatc acctcggcga caccgacagc gtcgggcatg cctggcgcga ccacgagctc
     1381 cgcgtggtgg acccacgcgc ggcggacgtt cggcgcctcg ccgatctgct cgagccggtc
     1441 ggcgacctcg tgctcgcggc gcacggggcc cgggccggcg gcctcggcgc cttctagagc
     1501 ggcaggatcg ccgccgcggc tccgaccgcc aacccgatcg cggcgaccgg cgaacggacg
     1561 gtcccggcca gatggggcgc tttggctctg gcctcgtgcc gcgtcgcgcg gcacgctcga
     1621 ctcatggtcg attccctgcc ccgcgccgcc gcgggtccaa cgcgagcggc atgaacgcgc
     1681 ttcacctccg ccgcctgaac gcgctccaga cccaccgctt ccccgacccg acgagcagcc
     1741 acgagacccg ggcgaacgcc gtcctgcgac ccgtggtgtt cggcgcgaac gacgggctgg
     1801 tgagcaacct cgccctggtc atgggcgtgg ccggcgcgaa cgcggagccg gccgtgatcg
     1861 tcctggccgg gatcgccggg ctgctggccg gcgccttcag catgggcgtc ggcgagtaca
     1921 tctccgtcca gtcgcagcgc gagctcctcg agttccagtt ggccttccag cgccatcagc
     1981 tccggctggc gcccgagcag gagcggcgca tcctccgcga catctacgtc gggcgcgggc
     2041 tggagcccga cgaggccgcc cggttcgtgg acaagctgtt cgagcagcca gagcaggcga
     2101 cccggttgct gatcttcgag gaggtcggcc tcgacgagcg ctcgatcggc agcccgctcc
     2161 aggccggcgt gggctcgttc ctggcgttca ccctcggcgc ggcgatcccg ctgatcccct
     2221 acctgctggc cagcggcggc ctcgccttct tcgcgagcat cgccgtcagc tccgtcgccc
     2281 tgctgacgct cggctacggg atcagccggt tgacccatcg gtctccgctg tacagcgcgg
     2341 tccgccagct cctccttggg gccctggccg ccgccgtcac gtacggcgcc ggcacgctgc
     2401 tgggggccac gctctgagaa ggtgacggga tcctcgccgg cggcgaacct cgcccgttgc
     2461 gcaaacccgg gccgtcaacc cgctaggctc cacggatggc gaagctgact ccgaagatca
     2521 tcctcgaggg gacgcgcctc acgcacaaga cggacctggc gttcgccctc aacgagcatc
     2581 cccggatcgt cggcccgcga cgctatcgct accactcccc gctgatctcc gcggagtggt
     2641 gcgggttcac gccggtgccc tggggccgcg gcccgatcaa cttcgagccc ggcggcgagg
     2701 aggaggcccg ggcgatggcg gtgttcgagg cctggacgca cctcatcgag ctccagccgc
     2761 actactcctg gatcatcgac cggttccacc tgtccgccaa ggcctaccag ctgacggccc
     2821 acgggtacga cgtcgacttc ggctggctcg agccgcgact tcaggccctc gacgtccata
     2881 tcgtcctgtg cacgcgacgc gacgggacgt gggaggcggc ccgcgacgag cgcctgacgg
     2941 tgtcgggcaa gccgtcgcag tacgacgacc tcggcgcgtt cgaacgtgag caggaactgc
     3001 tccgccgcct cgcctcggaa tcgctcctgc ccgtcctcga gctggatacg accgacggcg
     3061 acatggacgc ggcgtgcgac gccatcgccg actggctgac ctcgacgggt gggctctggc
     3121 cgcgcccgga ggcgtgacca gagcccgggc gatgtcctag acgctcacgt cgcgccgccc
     3181 caggccccag ccggacagg
//
LOCUS       DATDDI010000714         1517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_306358, whole genome shotgun sequence.
ACCESSION   DATDDI010000714 DATDDI010000000
VERSION     DATDDI010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306358"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1517)
                     /locus_tag="VIU37_10365"
     CDS             complement(<1..>1517)
                     /locus_tag="VIU37_10365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014405.1"
                     /translation="LAQAAGQAADFTFSHEQVRQFAIGQLSAARRRAVHGALVDLLLD
                     GGDPSPESLPMLAQHALAAGDTGRAARFSIDAAAAALASNAPEEALRLVEAALPVVST
                     PADRRTLLSCRDDAYSALRRTDDRLEGLTELAALAEAMRDPAMELDVQLRRASTLRME
                     HDEETAAELARRVRTRAAERGDRALELRATLEQGQALLKSPIGESFGAASSESDLAGA
                     DEAFRHAIELAEASNDERSLAAALREVAMIDLSKARDWFAEEARTGRTLELTARVVGG
                     EDPKTILPSLPIAPLMFDATQLLERALAIYERLGDRTGEMSTVIGMAYVNYAPLIHLG
                     SSARHIEEIQRVRSRLNQLVTESERARQDLQMLYGVHVFARAKVVPDLAIQRGEEAYR
                     MARIQADRPIEFAAAGGVAMSYLDLGDVAAAEKWLASAATAATAAPSRARARQLELWR
                     GLVRGAAGDAEGMRSHLERAIAMATEDRRPAALCEALATLALESSRLGAAAKPPD"
BASE COUNT          187 a          550 c          573 g          207 t
ORIGIN      
        1 tcgtcgggtg gcttggctgc ggcacccagg cgcgaggatt cgagggccag cgtggccagg
       61 gcctcgcaga gggcggcggg ccgacgatcc tcggttgcca tggcgatggc gcgttccagg
      121 tggctgcgca tgccttcggc gtcacccgcc gccccgcgga cgaggccgcg ccacagctcc
      181 agctgccgtg cccgcgccct cgagggagcg gccgtggcgg cggtcgcggc ggaggccagc
      241 cacttctcgg ccgcggcgac gtcgccgagg tcgaggtacg acatcgcgac cccgccggca
      301 gccgcgaact cgatcgggcg atcggcctgg atccgggcca tgcggtaggc ctcttcgccg
      361 cgctggatcg cgaggtcggg cacgaccttg gcccgggcga agacgtggac gccgtagagc
      421 atctgaaggt cctggcgcgc ccgctcgctc tcggtgacca gctggttgag gcgcgagcgg
      481 acccgctgga tctcctcgat gtggcgggcc gacgagccga gatggatgag cggcgcatag
      541 ttgacgtagg ccatgccgat gaccgtcgac atctcgccgg tccggtcgcc cagccgctcg
      601 tagatcgcga gggctcgctc gaggagctgg gtcgcgtcga acatgagcgg cgcgatcggg
      661 agcgacggca ggatcgtctt ggggtcctcg ccgccgacca cccgggcggt cagctccagg
      721 gtccgcccgg tccgggcctc ctcggcgaac cagtcgcggg ccttcgacag gtcgatcatc
      781 gcgacctcgc ggagggccgc cgccaggctt cgctcgtcat tggaggcctc ggccagctcg
      841 atcgcgtggc ggaacgcctc gtccgccccg gcgaggtcac tctcgctcga cgccgccccg
      901 aacgattccc cgatcgggct cttgaggagc gcctggccct gctcgagggt cgcccgcagc
      961 tccagcgcac gatcgccccg ttccgcggca cgcgtccgga cccggcgcgc gagctccgcg
     1021 gcggtttcct cgtcgtgctc catgcgcagg gttgacgccc gtcgcagctg gacgtccagc
     1081 tccatcgccg ggtcgcgcat cgcctcggcc agcgccgcca gctccgtcag gccctcgagc
     1141 cgatcgtccg tgcggcggag cgccgagtag gcgtcgtcgc ggcacgacag gagggttcgt
     1201 cgatccgcgg gggtcgagac gaccgggagc gccgcctcga ccaggcggag ggcctcctcg
     1261 ggtgcattcg aggccagggc cgccgccgcg gcatcgatcg agaagcgggc ggcccgcccg
     1321 gtgtccccgg cggcgagcgc gtgctgggcg agcatcggca ggctctcggg cgacggatcg
     1381 ccgccgtcga gcaggaggtc gaccagcgcc ccgtggaccg cgcggcgccg ggccgcggac
     1441 agctgcccga tcgcgaactg gcggacctgc tcgtggctga aggtgaagtc ggccgcctgg
     1501 cccgcggcct gcgccag
//
LOCUS       DATDDI010000715         1704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_576939, whole genome shotgun sequence.
ACCESSION   DATDDI010000715 DATDDI010000000
VERSION     DATDDI010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576939"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..1126)
                     /locus_tag="VIU37_10370"
     CDS             complement(68..1126)
                     /locus_tag="VIU37_10370"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY6014406.1"
                     /translation="MPSTAPRPVPSPLALWANMLVIYVVWGSTYFGIAIAIETIPPFL
                     MAAIRFAIAGLILLAWDLLRHPEARRLPTIRQLIDSAIVGGLLLGIGNGFVVFGEKTV
                     PSGIAAILIGMMPLWFALLGWLYLRQRLPRLVVAAIVIGFAGVALLIWPSGDGANHFD
                     AFGIFILILAPLGWAHGSIYSVQRAKLPHSPLTASGLQMLAGAAVTGIEALIAGEPAR
                     FVPGAVSSASVIAVAYLVLFGSMLAYTSYAWLLRHAPLSLVGTYAYVNPVVAVGLGTI
                     FLHEPISARTVVASVVILAAVAIIVTARGRLAGTSASDEVGAGETGPEPWPPSAADQA
                     AAREAALRRPAPRRARSG"
     gene            complement(1183..>1704)
                     /locus_tag="VIU37_10375"
     CDS             complement(1183..>1704)
                     /locus_tag="VIU37_10375"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEY6014407.1"
                     /translation="RGAIARRLSGDRRVRIPLDLRGHTPFEVAVWTKALEIPRGEVRP
                     YGWIAAEIGRPKAVRAVGTALAHNPVPLVVPCHRVVRSDGLIGQYSMGGPDAKRRILA
                     AEGLDTRALEAEAAAGIRFIGSDTTHIVCHPTCRDAKRVTTRHRIGFPSLAAAASAGY
                     RPCHHCRPVSLAA"
BASE COUNT          273 a          591 c          636 g          204 t
ORIGIN      
        1 gcctcgacgt tcccgaccgc catcggcgtg aacccgatga tcacggtgat ggcgatggcg
       61 cgccgggtca gccggaccgt gctcgccgag gcgccggccg cctgagcgcg gcctcgcgag
      121 ccgctgcctg atcggcggca gacgggggcc acggctcggg ccctgtctcg cccgccccga
      181 cctcgtcgct cgccgacgtc ccggcgagcc ggccgcgcgc ggtcacgatg atcgcgaccg
      241 cggccaggat cacgaccgac gcgacgaccg tccgtgcgct gatcggctcg tgcaggaaga
      301 tcgtgccgag cccgaccgcg acgaccgggt tcacgtacgc gtacgtgccc accagcgaca
      361 gcggcgcatg gcgcaggagc caggcgtacg aggtgtacgc gagcatgctc ccgaacagca
      421 cgaggtaggc cacggcgatc accgacgccg aggacacggc gcccgggacg aaccgggccg
      481 gctcgccggc gatgagcgct tcgatcccgg tcaccgcggc gccggcgagc atctgcaggc
      541 cggacgccgt gagcgggctg tgcggcagct tcgcccgctg gaccgagtag atggacccgt
      601 gcgcccagcc gaggggcgcg aggatcagga tgaagatgcc gaaggcgtcg aagtggttgg
      661 cgccgtcacc ggacggccag atcagcagcg cgacgcccgc gaagccgatc acgatggccg
      721 cgacgaccag gcgcggcagg cgctggcgca ggtacagcca gccgaggagg gcgaaccaca
      781 gcggcatcat cccgatgagg attgccgcga tcccggacgg cacggtcttc tcgccgaaga
      841 cgacgaaccc gttgccgatg ccgagcagca acccaccgac gatcgccgag tcgatgagct
      901 ggcggatggt cggcagccgg cgagcctccg gatgcctgag caggtcccag gcgaggagga
      961 tcagccccgc gatcgcgaac cggatcgccg ccatcaggaa cggcggaatg gtctcgatcg
     1021 cgatcgcgat gccgaagtac gtcgagcccc agacgacgta gatgacgagc atgttcgccc
     1081 acagggcgag cgggctcggg accggcctgg gcgcagtact tggcatagtc tggtggtcca
     1141 agcggcaagt ttaccgtaat ccgcccggcg cgagcgggac ggctaggccg cgagcgacac
     1201 cgggcggcag tggtggcacg gccggtagcc ggcactcgcg gcggcggcca ggctcgggaa
     1261 cccgatccgg tggcgggtcg tgacccgctt cgcgtcccgg cacgtcgggt ggcacacgat
     1321 gtgggtcgtg tccgagccga tgaaccggat cccggctgcc gcctcggcct cgagggcgcg
     1381 ggtgtccagg ccctcggcgg cgaggatccg gcgcttggcg tcggggccac ccatcgagta
     1441 ctggccgatc aatccgtcgc tgcggacgac acggtggcac ggcaccacca gcgggaccgg
     1501 gttgtgagcg agcgcggtgc ccacggcgcg gaccgccttc ggcctgccga tctcggctgc
     1561 gatccagccg tacggccgga cctcgccgcg cgggatctcg agggccttgg tccagaccgc
     1621 gacctcgaac ggcgtgtggc cccggagatc gagggggatg cggacgcggc gatcgccact
     1681 gagccgcctg gcgattgcac cgcg
//
LOCUS       DATDDI010000716         1630 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_472971, whole genome shotgun sequence.
ACCESSION   DATDDI010000716 DATDDI010000000
VERSION     DATDDI010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472971"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1493)
                     /locus_tag="VIU37_10380"
     CDS             complement(<1..1493)
                     /locus_tag="VIU37_10380"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY6014408.1"
                     /translation="MDTAATDSSAARAAPSLFLRNATGLVKGWSGFDAFAYSFMSVNL
                     VTLGMYYSFTVFGWQADGSPIAAVVLSAIAMTFLAITYAGLIAAMPRAGGDYVWQTRV
                     LDGIPGGVTGAVTGAVILFLVAGAMGMDQTTALVGGAAGVVVGGLIGLKRGGIGFVLA
                     ATGWWFILSLWAPIYGTIFNYEFVQPLAALTGQTAITDFVATQTGAFVVDLLVILLVT
                     GLVALGMAGYARIQRVSLWIGLAVLGVVLVLMLVSTQADFQKAFDREAMSLFQVPNAY
                     QSTLDGEAGFGYAFADLSPFSFGPGTWALIPFMMFWILYPNWGATLYGEVRGAGDFRK
                     VLNGMLGGIWVTTVLAIIFLLLAAKTFGWIFFQATNANFLDPLYAVPDAPAAVIPIWS
                     YPIMLASFLIDSHVIQMIIVILAGAWFLGWAGTLFLSSTRMIFAAAFDRILPEAAARV
                     SERRAVPWVALLLIMVPSVILSWVYSYNADFVSLTLDASLVIAVTFLG"
BASE COUNT          315 a          537 c          563 g          215 t
ORIGIN      
        1 ccgaggaagg tcaccgcgat gacgagcgag gcatcgagcg tcaacgacac gaagtcggcg
       61 ttgtacgagt agacccagct caggatcacc gacgggacca tgatcaggag cagggcgacc
      121 cacgggaccg cgcgccgctc cgagacccgg gctgccgcct cgggcaggat ccggtcgaac
      181 gccgccgcga agatcatccg cgtcgacgac aggaagagcg tccccgccca gcccaggaac
      241 caggcgccgg cgaggatgac gatgatcatc tggatcacgt ggctgtcgat caggaacgac
      301 gccagcatga tcgggtagct ccagatcggg atgaccgcgg cgggtgcgtc cgggaccgcg
      361 tagagcgggt ccaggaagtt ggcgttggtc gcctggaaga agatccagcc gaacgtcttc
      421 gccgcgagca gcaggaagat gatcgccagg acggtggtca cccagatccc gcccagcatg
      481 ccgttcagga ccttccggaa gtcacccgcg ccgcgaacct cgccgtagag ggtggcgccc
      541 cagttcgggt agaggatcca gaacatcatg aacgggatga gggcccaggt tcccggcccg
      601 aacgagaacg gcgacaggtc ggcgaaggcg tagccgaagc cggcctcccc gtcgagcgtc
      661 gactggtagg cattggggac ctggaacagg ctcatcgcct cacggtcgaa ggccttctgg
      721 aagtcggcct gcgtcgagac gagcatgagc accaggacga ccccgaggac ggccaggccg
      781 atccacaggc tgacgcgctg gatccgggcg tagcccgcca tgccgagggc gacgagcccg
      841 gtgaccagca ggatgacgag caggtcgacg acgaacgcgc cggtctgggt cgccacgaag
      901 tccgtgatcg ccgtctggcc ggtgagggcc gcgagcggct ggacgaactc gtagttgaag
      961 atcgtgccgt agatcggcgc ccagagcgac aggatgaacc accagcccgt cgccgcgagg
     1021 acgaagccga taccgcctcg cttgaggccg atcaggccac cgacgacgac gccggcagcg
     1081 ccgccgacga gggccgtcgt ctggtccatg cccatcgcgc ccgcgacgag gaacaggatg
     1141 accgcgccgg tcacggcgcc ggtaaccccg ccggggatcc cgtccaggac ccgggtctgc
     1201 cagacgtagt cgccgccggc ccgcggcatc gccgcgatga ggccggcgta cgtgatcgcg
     1261 aggaacgtca tcgcgatcgc cgacaggacg accgccgcga tcggcgagcc gtcggcctgc
     1321 cagccgaaga ccgtgaagct gtagtacatg ccgagggtga cgaggttcac cgacatgaag
     1381 ctgtaggcga acgcgtcgaa cccggaccag cccttgacga ggccagtcgc gttgcgcagg
     1441 aacagcgagg gcgccgcccg tgcggccgag ctatcggttg ctgccgtatc catccgtctc
     1501 ctcctcctga agggcctcag gctctccgga tcttgggcac cgatcgcgtg tcgatcctca
     1561 gccgttgatc aataggtaac tcttcacttc ggccttcctg gcgtccaggt cgacgatcgc
     1621 cgcctggagg
//
LOCUS       DATDDI010000717         1858 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_140341, whole genome shotgun sequence.
ACCESSION   DATDDI010000717 DATDDI010000000
VERSION     DATDDI010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140341"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1234)
                     /gene="tig"
                     /locus_tag="VIU37_10385"
     CDS             complement(<1..1234)
                     /gene="tig"
                     /locus_tag="VIU37_10385"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEY6014409.1"
                     /translation="MQITSTPAPNSTVVLEIELPPEELTRAIGESVRHLSQRTRVPGF
                     RPGKAPRPLLERHLGPGAVLDDAVEHLVERSYRQALVEQDILPLTNADVEVVQAEEGK
                     PLVFKATVQVRPEVALGDYKHFNFRPEIDTIDDAKVDQVIEELRDQNSTLAAVEDRGA
                     RNGDYAVISFTGTRDGEPFEGGSSERMPLILGQERLIPGFEANLIGLEVGGKKGFDIT
                     FPDDYPETELAGKPAHFEVELRELREKVQPELDDDFLKTLGDFADLAALRADVRTRLQ
                     RNALDRARHAFAERIIDYAVANATLDLPEILVEQEVEVMHDEFRGSLARQGITEEAYL
                     KAIEKTEADMHAEFRPGAEKRVRTLLVLSKVAEAEGVVVPESDVVDEIARGRERYAGD
                     PKLLAYFDSDRGRSYIRST"
     gene            complement(1303..1390)
                     /locus_tag="VIU37_10390"
     tRNA            complement(1303..1390)
                     /locus_tag="VIU37_10390"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1355..1357),aa:Leu,seq:tag)
     gene            complement(1507..>1858)
                     /locus_tag="VIU37_10395"
     CDS             complement(1507..>1858)
                     /locus_tag="VIU37_10395"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6014410.1"
                     /translation="IFGPVLGMVRVATYDEAINLVNSHKYANGTAIFTTDGGAARRYQ
                     LEVEVPMVGVNVPIPVPAGYLSFSGAKESALGDLPMRGEDGLRFFTRQKEVTIRWPEP
                     GRRAALSLVFPSNS"
BASE COUNT          253 a          618 c          684 g          303 t
ORIGIN      
        1 gcgtgctccg gatgtacgac cgcccgcggt ccgaatcgaa gtaggcgagg agcttgggat
       61 cgccggcgta gcgctcgcgg ccgcgggcga tctcgtcgac gacgtcgctc tctggcacga
      121 cgacgccttc ggcctcggcc accttggaca ggaccaggag cgtccgcacc cgtttctccg
      181 cacccggccg gaactccgcg tgcatgtccg cctcggtctt ctcgatcgcc ttgaggtagg
      241 cctcctcggt gatcccctgg cgggcgagcg agccgcggaa ctcgtcgtgc atcacctcga
      301 cctcctgctc cacgaggatc tcgggcaggt cgagggtcgc attggcgacg gcgtagtcga
      361 tgatccgctc cgcgaacgcg tgacgcgccc ggtcgagcgc gttgcgctgg aggcgagtcc
      421 ggacgtcggc ccgcagggcg gcgagatcgg cgaagtcgcc gagggtcttg aggaagtcgt
      481 cgtcgagctc cggctggacc ttctcgcgaa gctcgcggag ctcgacctcg aagtgcgccg
      541 gcttgccggc gagctcggtc tccgggtagt cgtcggggaa ggtgatgtcg aagcccttct
      601 tgccgccgac ctcgagcccg atcaggttgg cctcgaaacc cgggatcaga cgctcctgtc
      661 cgaggatcag cggcatccgc tcggagctgc cgccctcgaa cggctcgccg tcgcgcgtcc
      721 cggtgaacga gatgacggcg tagtcgccgt tgcgggcgcc gcggtcctcg accgccgcca
      781 gtgtcgagtt ctggtcgcgc agctcctcga tgacctggtc gaccttggcg tcgtcgatcg
      841 tgtcgatctc gggccggaag ttgaagtgct tgtagtcgcc gagggcgacc tccggtcgga
      901 cctggacggt cgccttgaag acgaggggct tgccctcttc ggcctggacg acctcgacgt
      961 cggcgttggt caacggcagg atgtcctgct cgacgagcgc ctggcggtac gagcgctcga
     1021 cgagatgctc gacggcgtcg tccagcacgg caccgggccc gagatggcgc tcgagcagcg
     1081 gccgcggcgc cttgccgggg cggaacccgg ggacgcgcgt gcgttgcgac aggtggcgga
     1141 ccgactcgcc gatggcccgg gtcagctctt cgggcggcag ctcgatctcg agcacgacgg
     1201 tggagttggg agcgggggtg gaggtgatct gcatcgcccg ggaagtatag ggctggggcg
     1261 tgacccgggc cgggaccggg gcgaccgcca gacggtcgat gctggtaggc gagagagggg
     1321 tcgaacctcc acgccgcttt cgcggcaccg gctcctaagg ccggcgcgtc tgccattccg
     1381 ccactcgccc gtgccgggag tctagcgcgc gatcccgggc gtgaccgtcc atgtcggcga
     1441 tcgccggccg acagcacagg aggccggtcc cgcgaccggc ctcctgcctg cacgccttgc
     1501 gaacggctag ctgttgctgg ggaagaccag gctgagtgcc gcccggcggc cgggctccgg
     1561 ccagcggatc gtgacctcct tctggcgcgt gaagaagcgg aggccgtctt cgccgcgcat
     1621 cggcaggtcg ccgagcgcgg attccttggc gccgctgaag ctgaggtacc cggccgggac
     1681 cgggatcggc acgttgacgc cgaccatcgg gacctcgacc tcgagctggt agcggcgggc
     1741 tgcgccgccg tcggtcgtga agatggccgt gccgttcgcg tacttgtggg agttgaccag
     1801 gttgatcgcc tcgtcgtacg tggcgacgcg gaccatcccg aggaccggcc cgaagatc
//
LOCUS       DATDDI010000718         1817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_472992, whole genome shotgun sequence.
ACCESSION   DATDDI010000718 DATDDI010000000
VERSION     DATDDI010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472992"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..1123)
                     /locus_tag="VIU37_10400"
     CDS             complement(71..1123)
                     /locus_tag="VIU37_10400"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014411.1"
                     /translation="MEFLVLAIAFVVILAGAELFTNGIEWFGLKLGLAEGAVGSVLAA
                     VGTALPETMIPIIAILFSAGASSSEVGVGAILGAPFMLATLAMFVTGVAVLIVGRHRS
                     TGDVMRVDTVVLAHDMRFFAIAYTIAIAASFLPVDPTWLKWIVAAVLIGIYFWYVKGH
                     FEADPDTDAEDLVPLRLRRLDARHHRHNPAVPRLRVVNLQVLLALGLIVAGATFFVDS
                     VEQIAEELHVDGTLLALVIAPIATELPEKFNSVIWVRMGKDTLAMGNITGAMVFQATI
                     PTVVALLFAPHAWVAESGSYTAFASAGIAFLSSAFVFIPMARRGELRGRGLLIGGVFY
                     LAYLSAVITVISGVLG"
     gene            complement(1126..1497)
                     /locus_tag="VIU37_10405"
     CDS             complement(1126..1497)
                     /locus_tag="VIU37_10405"
                     /inference="COORDINATES: protein motif:HMM:NF019459.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1634 domain-containing protein"
                     /protein_id="HEY6014412.1"
                     /translation="MTGSARAGALQAERLIGRLLTAITYVSVGLLVIGVLLLMVAGTS
                     PTSGGPRFDPGHLVPDILSLRPAGFLWLGLVAVIAAPVSRVTVALVSYVRARDWLMAG
                     VSTAILVVIAIAVGSAVVSTV"
     gene            complement(1494..>1817)
                     /locus_tag="VIU37_10410"
     CDS             complement(1494..>1817)
                     /locus_tag="VIU37_10410"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEY6014413.1"
                     /translation="GVASALLGIGGGIIKVPLMHLAMGVPLRVATATSNLMIGITAAA
                     SAVIYLIHGGIDPYVAGPTGIGVFVGATAGSRLGHRVDLRYLRLLFVVVLGYTAVQML
                     LRAFQ"
BASE COUNT          332 a          623 c          653 g          209 t
ORIGIN      
        1 tcagcgggtc accggccggc cgggagggag gatccgcccg tgagtcggcg cccgcctccg
       61 gccgtcaggc tcagccgagg acgccgctga tgacggtgat gacggccgac aggtaggcga
      121 ggtagaacac gccgccgatc aacagccctc ggccgcgcag ctcgccgcgg cgggccatcg
      181 ggatgaacac gaacgccgac gacaggaagg cgatgccggc cgaggcgaac gcggtgtacg
      241 agcccgattc cgccacccag gcgtgcggcg cgaacagcag cgcgacgacc gtcgggatgg
      301 tggcctggaa gaccatcgcc cccgtgatgt tgcccatggc cagggtgtcc ttgcccatgc
      361 ggacccagat gaccgagttg aacttctcgg ggagctcggt ggcgatcggc gcgatgacga
      421 gggccaggag cgtcccatcc acatgcagtt cctcggcgat ctgctcgacc gaatcgacga
      481 agaacgtggc gccggcgacg atcagcccga gggcgagcag gacctgcagg ttcacgacgc
      541 gcagccgcgg caccgccggg ttgtggcggt gatgcctcgc gtcgagccgg cgcagccgga
      601 gcgggacgag gtcctccgcg tcggtgtcgg ggtcggcttc gaagtggccc ttgacgtacc
      661 agaagtagat cccgatcagg accgccgcca cgatccactt gagccaggtc gggtcgaccg
      721 gcaggaacga ggctgcgatg gcgatcgtgt aggcgatggc gaagaagcgc atgtcgtggg
      781 cgaggacgac cgtgtcgacc cgcatgacat ccccggtcga acgatggcgg cccacgatca
      841 ggaccgccac gccggtgacg aacatggcca gcgtggcgag catgaacggt gcgccgagga
      901 tcgcgccgac gccgacctcg ctcgacgacg cccccgccga gaacaggatc gcgatgatcg
      961 ggatcatcgt ctccgggagc gccgtgccga ccgccgcgag gacggagccg acggctccct
     1021 cggccagccc gagcttgagc ccgaaccact cgatgccgtt ggtgaacagc tcggcgccgg
     1081 ccaggatcac gacgaacgcg atggcgagga ccaggaactc catcgtcaga ccgtgctcac
     1141 cacggcactg ccgacggcga tcgcgatgac gaccaggatc gcggtcgaga cgccggccat
     1201 cagccagtcc cgggcgcgca cgtaggacac cagcgccacg gtcacccggc tgacgggcgc
     1261 cgcgatcacc gcgacgaggc caagccagag gaacccggcc ggtcgcagcg agaggatgtc
     1321 gggcacgagg tgcccgggat cgaacctggg tccgccggag gtgggcgacg tgccggcgac
     1381 catgagcagc aggaccccga tcacgagcag accgaccgag acgtacgtga tcgcggtcag
     1441 gaggcggccg atcaaccgct cggcctgcag ggccccggct cgcgcggatc ccgtcactgg
     1501 aaggcccgca ggagcatctg gaccgccgtg tagccgagga ccaccacgaa cagcagccgg
     1561 aggtagcgca ggtccacccg gtgcccgaga cgcgacccgg ccgtggcccc gacgaacacg
     1621 ccgatcccgg tcggcccggc gacgtacggg tcgatcccgc cgtggatcag gtagatcacc
     1681 gcgctcgcgg cggcggtgat gccgatcatg aggttgctgg tcgcggtggc cacgcgcagg
     1741 ggcacgccca tggccaggtg catcaacggc accttgatga tcccgccgcc gatcccgagc
     1801 agcgccgacg cgacccc
//
LOCUS       DATDDI010000719         4082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_639693, whole genome shotgun sequence.
ACCESSION   DATDDI010000719 DATDDI010000000
VERSION     DATDDI010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639693"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VIU37_10415"
     CDS             <1..409
                     /locus_tag="VIU37_10415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014414.1"
                     /translation="TDVERMADRVCILDRGRIVAAGTPGELAAGATPRLRFRLEAALE
                     PADLAVLAATLAGARPGAVVEAEPDAGFYRVEGVVPDPGLVAAVAAWCATGSHLLREL
                     RTTGGTLEDVYLELTRVSREDAGGSRPVTEAAS"
     gene            406..1155
                     /locus_tag="VIU37_10420"
     CDS             406..1155
                     /locus_tag="VIU37_10420"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014415.1"
                     /translation="MSRPAPAIAATLAQTTTELRLTARRGENVLVTIIIPAVVLLFFA
                     SSGVLPSGAGRPVDFLLPGSLALAVIATGLVNLGIATAYERHYGVLKRVGGSPLTRAG
                     LIAAKMLAVLAVEIAQVVLLVAIGVLVLGWSLPSGAVPALLVVALLLGTVAFAGLGLL
                     LAGTLRAEATLALANGLFLVALMLGGIVLPLDHLPDPLAAVAGVLPAAALADTFRVAL
                     GSGGDAAAPLAILVAWGLGAVALTVRTFRWE"
     gene            1260..2459
                     /locus_tag="VIU37_10425"
     CDS             1260..2459
                     /locus_tag="VIU37_10425"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyltransferase family protein"
                     /protein_id="HEY6014416.1"
                     /translation="MILTSPFHERTSALNETGLWSHWSGHLAADRYQMSDKFEYFAVR
                     NSAGVFDSSPLYKYRIHGPDAERFLAGVLARDIRACPPGHAQYTAWCDDRGFVVEDGV
                     VLRHGPDEFLLTAAEPNLAYFADLIGRDDVRIEEVSHDYGVIAVQGPRSRELLARLVP
                     GVASIPYFGLTGGTIAGRPVTVSRTGYSGDLGYEVWIQAPDALRVWDALWDAFEGYGV
                     LPFGLSALYMLRIEAGLLLLDVDFSSSRFAWTDEDRSTPIELGLGWMFRDLAADDRAF
                     IGRRAIERELADATSRWRMTGLILDWQDYDRIYDSAGLIPPKDHTPVQEELFVYDDDI
                     RQVGYATSSMYSPVLQRHIAMARVRPDLARAGASVRLEVDVNHHYEYVKATTARLPLY
                     NPARKTA"
     gene            2461..>4082
                     /locus_tag="VIU37_10430"
     CDS             2461..>4082
                     /locus_tag="VIU37_10430"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY6014417.1"
                     /translation="MAKSKPEPRAAKGRRSSSTTTAGAAPARAADRTYDAIVVGGGHN
                     GLVNGAYLARAGLRTLIVERRPLVGGAAITEELWPGFSFTTFSYALSLLRPDIIHELE
                     LTKHGFMPLLMSSTFAPMENGDYLWLGQDHDQNLKEIARHSRHDADAYEQYSHDMEQV
                     CQAIKPLLDAPPPDLFSDDPEELLALASLGSRFRRLDKRVLHNVVRLLTGSAADFLDD
                     YFDSDIVKGYLASSSIIGTKVGPRSQGSGLVLLYHTIGEHDGEFGAWAFHKGGNGGFT
                     QVLARAARSFGAEIVLESPVDSVITKGGRATGVALADGTEYHATTVVSALDPRRTFLE
                     LVNPRELPADLVESIRRFRFQGTSAKVNFALDGLPEYPALAGRGDQYRGFTNIGPSMD
                     YLERAFDEAKYGWYSSRPYLDCAIQSTIDPDMAPPGKHVWSSFVQYAPYQLRDSDWDT
                     ERQNLGDTVQRTIESFFPGFGKLVLHREVVTPLDIERTVGLSEGNIFAGEFLAPQMYF
                     FRPAPGWSQYRTPIEGYYQCGSGTHPGGCVMGA"
BASE COUNT          564 a         1509 c         1400 g          609 t
ORIGIN      
        1 gaccgacgtg gagcggatgg ccgaccgcgt ctgcatcctc gatcgcggcc ggatcgtcgc
       61 ggccgggacc cccggggagc tcgcggccgg agccacgcca cgactgcgct tccgcctcga
      121 ggcggcactc gaacccgcgg atctggcggt gctggcggcg accctcgccg gtgcccgtcc
      181 gggtgccgtg gtcgaggccg aacccgacgc cggcttctac cgggtcgagg gcgtcgtgcc
      241 cgatcccggg ctggtcgccg ccgtggccgc ctggtgcgca accggcagtc acctgctgcg
      301 ggagctgcgg acgaccggag gaacgctgga ggacgtctac ctcgagctga cccgggtgtc
      361 ccgcgaggac gccggcggat cgcggccggt gacggaggcc gcgtcgtgag ccgccccgcc
      421 ccggcgatcg ccgcgacgct ggcccagacc acgacggagc tccggctcac cgcgcgacgc
      481 ggcgagaacg tgctggtcac gatcatcatc ccggccgtcg tgctgctctt cttcgcgtcg
      541 tccggcgtcc tgccgagcgg cgccggtcgc ccggtcgact tcctgctccc cgggtcgctc
      601 gcgctcgcgg tcatcgccac cgggctggtc aacctcggga tcgccacggc ctacgagcgg
      661 cactacggcg tgctcaagcg ggtcggcggc tcgccactga cgcgcgccgg cctgatcgcg
      721 gcgaagatgc tcgccgtcct cgccgtggag atcgcccagg tcgtgctgct cgtggcaatc
      781 ggggtcctcg tcctcggctg gtcgctcccc tccggcgccg tcccggccct gctggtcgtc
      841 gcgctgctcc tcggcacggt cgcgttcgcc gggcttgggc tgctgctggc cggaaccctc
      901 cgcgccgaag ctacgctcgc actcgccaac gggctcttcc tcgtggcgct catgctcggc
      961 gggatcgtcc tgccgctcga ccacctgccc gatccgctcg ccgcggtggc gggcgtcctc
     1021 cccgcggcgg cgctcgcgga cacgttccgg gtcgcgctcg gctcgggcgg cgacgcggcg
     1081 gcaccactcg cgatcctcgt cgcctggggg ctcggcgccg tggcgctcac ggtgcggacg
     1141 ttccgctggg agtaggcgga acggttgacc gggccggctc agccggcgag acagcctccc
     1201 ggccgggcgc cgtcggcccg ctacccttgc cgccacccga gcacccgaac gagggcggca
     1261 tgatcctgac gtcacccttc cacgagcgga ccagcgcgct caacgagacc ggcctgtgga
     1321 gccattggtc ggggcacctg gccgccgacc gctaccagat gtcggacaag ttcgagtact
     1381 tcgcggtccg caacagcgcc ggggtgttcg actcgtcgcc gctctacaag taccggatcc
     1441 acggcccgga cgccgagcgt ttcctggccg gcgtcctcgc tcgcgacatc cgcgcctgcc
     1501 cgcccggcca cgcccagtac accgcctggt gcgatgaccg cgggttcgtg gtcgaggacg
     1561 gcgtggtcct gcgccacggt ccggacgagt tcctgctcac cgccgccgag cccaacctcg
     1621 cctacttcgc cgacctgatc gggcgcgacg acgtcaggat cgaggaggtg agccacgact
     1681 acggggtgat cgccgtccag ggtccacgat cgcgcgagct gctggcacgg ctcgtcccgg
     1741 gcgtcgcgtc gatcccctac ttcgggctga cgggcgggac gatcgccggc cggccggtga
     1801 ccgtgtcgcg gaccggctac agcggcgacc tgggctacga ggtgtggatc caggcgccgg
     1861 acgcgctgcg cgtctgggac gccctctggg acgcgttcga ggggtatggc gtcctcccgt
     1921 tcggcctgtc ggcgctgtac atgctccgga tcgaggccgg gctgctcctg ctcgacgtcg
     1981 acttctcgtc gagccggttc gcctggaccg acgaggaccg ctcgacgccg atcgagctcg
     2041 ggctgggctg gatgttccgc gacctcgccg cggacgaccg cgcgttcatc ggccggcgtg
     2101 ccatcgaacg cgaactggcc gacgcgacct cgcgctggcg gatgaccggg ctcatcctcg
     2161 actggcagga ctacgaccga atctacgact cggccgggct gatcccgccc aaggaccaca
     2221 cgccggtgca ggaggagttg ttcgtgtacg acgacgacat ccgccaggtg ggctacgcca
     2281 cgagctcgat gtactcgccg gtgctccagc gccatatcgc gatggcgcgg gtgcgaccgg
     2341 acctcgcccg ggccggcgct tcggtccgcc tggaggtcga cgtgaaccac cactacgagt
     2401 acgtcaaggc gacgaccgcc cggttgccgc tctacaaccc ggccaggaag acggcctgac
     2461 atggcgaagt cgaagcccga acccagggcg gcgaaggggc ggcgctcatc gagcacgacg
     2521 acggccggcg ccgcgccggc gcgcgccgcg gaccggacct acgacgcgat cgtggtcggc
     2581 ggcggccaca acgggctggt caacggcgcg tatctggcca gggcgggcct gcggaccctg
     2641 atcgtcgagc ggcgtccgct ggtcggcggc gcggcgatca ccgaggaact ctggcccggc
     2701 ttctcgttca cgaccttctc gtatgcgctg agcctgctcc ggccggacat catccacgag
     2761 ctcgaattga cgaagcacgg gttcatgccg ctgctcatgt cgtcgacgtt cgcgccgatg
     2821 gagaacggcg actacctgtg gctcggccag gatcacgacc agaacctcaa ggaaatcgcg
     2881 cgccacagcc ggcacgacgc cgacgcctac gagcagtact cgcacgacat ggagcaggtc
     2941 tgccaggcga tcaagccgtt gctcgacgcg ccgccacccg acctgttcag cgacgatccc
     3001 gaggagctgc tcgcactggc gtcgctgggg tcgcgcttcc ggcgcctcga caagcgggtc
     3061 ctccacaacg tggtccggct gctgaccggc agcgccgccg acttcctcga cgactacttc
     3121 gactccgaca tcgtcaaggg ctacctcgcc tcgtcgagca tcatcggcac caaggtcggg
     3181 ccgcggtcgc aggggtcggg gctcgtgctg ctctaccaca cgatcggcga gcacgacggc
     3241 gagttcgggg cgtgggcctt ccacaagggc ggcaacggcg ggttcaccca ggtgctcgcg
     3301 cgggcggccc gctcgttcgg ggccgagatc gtcctcgaat cgccggtcga ctcggtgatc
     3361 acgaagggcg gccgggcgac cggcgtcgcg ctcgccgacg gcaccgagta ccacgccacc
     3421 acggtggtca gcgccctcga cccgcggcgg acgttcctcg agctggtcaa cccccgcgag
     3481 ctgcctgccg acctggtcga gtccatccgg cggttccgct tccagggaac gtcggccaag
     3541 gtcaacttcg cgctcgacgg cctcccggaa tacccggcgc ttgccggccg tggcgaccag
     3601 taccgcggct tcaccaacat cgggccgtcg atggactacc tcgaacgcgc cttcgacgag
     3661 gccaagtacg gctggtacag ctcgcgcccg tacctcgact gcgcgatcca gtccacgatc
     3721 gacccggaca tggcgccgcc cggaaagcac gtctggagct cgttcgtgca atacgcgccg
     3781 taccagctgc gcgatagcga ctgggacacc gagcgccaga acctcggcga caccgtccag
     3841 cggacgatcg agtccttctt cccgggcttc gggaagctcg tgctccaccg cgaggtcgtg
     3901 accccgctcg acatcgaacg gacggtcggc ctctccgagg gcaacatctt cgccggcgaa
     3961 ttcctcgccc cgcagatgta cttcttccgg ccggcgcccg gctggagcca gtaccgaacc
     4021 ccgatcgagg gctattacca gtgcggctcc gggacgcatc ccggcggctg cgtcatgggc
     4081 gc
//
LOCUS       DATDDI010000720         1916 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_743428, whole genome shotgun sequence.
ACCESSION   DATDDI010000720 DATDDI010000000
VERSION     DATDDI010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743428"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VIU37_10435"
     CDS             <1..658
                     /locus_tag="VIU37_10435"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEY6014418.1"
                     /translation="PGYLLTVHAASWDPRDSNKLRSGIGPVLRRGPDHLLWALADDIV
                     DGYFPFADRLGDAIDAVQDRVVQKATPEVLEQLFLLKRELIEVRRAVSPVREVFNQLT
                     NRDITLIDEEELVYYRDIYDHIIRLTDELDNYRELASATLDVYLSTINNNLSIIMKRL
                     TGVTVILAGIGAVAGIFGMSEAGTALGGSEAPGFWLVTTITVGIAATAAIVLRRIDWI
                     "
     gene            complement(655..1563)
                     /gene="otsB"
                     /locus_tag="VIU37_10440"
     CDS             complement(655..1563)
                     /gene="otsB"
                     /locus_tag="VIU37_10440"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HEY6014419.1"
                     /translation="MTAAVSGRARSTSRPRPGRADLERILARPGRLLIVSDFDGTLAE
                     GSRDPAAATIVPLARRALRRLARIERTRPDRLAVAILTGRAVPDAATRVRVGGIRYLG
                     DHGLQTGTYPRGRAAERVETTIVAGHEASVEPAAILAERVPRLLGSPAWLFVERKGPS
                     VAFHVRQAEDRVAARAAVEAAIERVDRELPPHDLEHYRGRLVVDLRPRTAGGKREALE
                     RLLEELRPAAAVAFGDDLSDVDAFAVLRAGRDAGRLDALAVGVTGPHGTPDEVRATAD
                     LVLDTPFEAARMLAWIARALDGEAGR"
     gene            complement(1560..>1916)
                     /locus_tag="VIU37_10445"
     CDS             complement(1560..>1916)
                     /locus_tag="VIU37_10445"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY6014420.1"
                     /translation="KPVWVNFMATWCPPCQDEFPLMNGFAARYAGTGLVVIAVDVRED
                     EGTVAGFAQRLNATFPLGLDADGQASDRWGAIALPVHFWIDAKGIVRDGAAGGIGADT
                     MVHGLESILPGVNVTP"
BASE COUNT          269 a          695 c          700 g          252 t
ORIGIN      
        1 ccccggctat ctgctgacgg tccacgcggc gagctgggac ccgcgcgatt caaacaagct
       61 gcggtcgggc atcgggccgg tccttcgccg cggcccggat catctgctct gggcgctggc
      121 cgacgacatc gtcgacggct acttcccctt cgccgaccgg cttggcgacg cgatcgacgc
      181 cgtccaggac cgggtggtac agaaggcgac gcccgaagtg ctcgagcagc tgttcctgct
      241 caagcgcgag ctgatcgagg tccgccgggc cgtcagcccg gtgcgcgagg tgttcaacca
      301 gctgaccaac cgcgacatca ccctgatcga cgaggaagag ctggtctact accgggacat
      361 ctacgaccac atcatccggt tgaccgacga gctcgacaac tatcgcgagc tcgcctcggc
      421 gacgctcgac gtctacctga gcacgatcaa caacaacctg tcgatcatca tgaagcggct
      481 gaccggggtg accgtcatcc tggccgggat cggggcggtc gccgggatct tcgggatgag
      541 cgaggcgggg acggcgctcg gcggttcgga ggcgcccggg ttctggctgg tcaccaccat
      601 cacggtcggg atcgccgcca ccgcggcgat cgtgttgcgg cggatcgact ggatctagcg
      661 gcccgcctcg ccgtcgaggg cgcgcgcgat ccaggccagc atccgtgccg cctcgaacgg
      721 cgtgtccagc acgaggtccg cggtcgcccg gacctcgtcg ggcgttccgt gcgggcccgt
      781 cacgccgacc gcgagggcgt cgagccggcc ggcgtcgcgt ccggcccgca gcaccgcgaa
      841 cgcgtcgacg tcgctcaggt cgtcgccgaa ggcgaccgcg gcggccgggc gcagctcctc
      901 gaggaggcgc tcgagcgcct cgcgcttgcc gccggcggtg cgcgggcgca ggtccacgac
      961 cagccgtccc cggtagtgct ccaggtcgtg cggcgggagc tcgcggtcga cccgctcgat
     1021 ggcggcctcg acggccgcgc gggccgcgac gcgatcctcc gcctggcgga cgtggaacgc
     1081 gaccgacggg cccttgcgct cgacgaacag ccaggccggc gagccgagga gtcgcggcac
     1141 gcgctcggcc aggatcgccg ccggctcgac cgaggcctcg tgaccggcga cgatcgtggt
     1201 ctcgacgcgc tcggccgccc ggccccgcgg gtacgtgccg gtctggagcc cgtggtcgcc
     1261 caggtagcgg atgccgccga cccggacgcg ggtggcggcg tccgggaccg cccggccggt
     1321 caggatcgcc accgccagcc ggtccgggcg cgtccgttcg atccgcgcca ggcggcggag
     1381 ggcgcggcgg gcgagcggca cgatcgtggc cgcggccggg tcgcgggatc cctcggccag
     1441 cgtcccgtcg aagtcggaca cgatcaggag ccgcccggga cgagcgagga tccgctcgag
     1501 atcggcccga ccggggcggg ggcgcgacgt cgatcgggcg cgcccggaga cggccgcggt
     1561 caaggcgtga cgttgacccc gggcaggatg ctttccaggc cgtggaccat cgtgtcggcg
     1621 ccgatcccgc cggccgcccc gtcgcggacg atccccttcg catcgatcca gaaatggacc
     1681 ggcagggcga tggcccccca gcgatcggac gcctgcccat ctgcgtcgag accgagcggg
     1741 aacgtggcgt tcagccgctg ggcgaagccc gccaccgttc cttcgtcctc ccggacgtca
     1801 acggcgatga ccacgagccc ggtgccggcg tagcgggcgg cgaagccgtt catcaacggg
     1861 aactcgtcct ggcacggcgg gcaccatgtc gccatgaagt tgacccagac cggctt
//
LOCUS       DATDDI010000721         3017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_618625, whole genome shotgun sequence.
ACCESSION   DATDDI010000721 DATDDI010000000
VERSION     DATDDI010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618625"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..144
                     /locus_tag="VIU37_10450"
     CDS             <1..144
                     /locus_tag="VIU37_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000154017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6014421.1"
                     /translation="LAEALRVSRQTVNAIETGRYLPSLPLAFAIARYFGRRIEEIFHD
                     DAV"
     gene            128..514
                     /locus_tag="VIU37_10455"
     CDS             128..514
                     /locus_tag="VIU37_10455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014422.1"
                     /translation="MTTLSRWFVPAAGLGLGILIAAAELRRSGSPWQAALAFVIVAGY
                     ALALRAFQTRSDVASVLSGLPRDERWESINLRALALAAEVLAVVLVVAFLGARFSGGD
                     ANTYAFLGAIFAAVYLGGLVWYRSRS"
     gene            618..935
                     /locus_tag="VIU37_10460"
     CDS             618..935
                     /locus_tag="VIU37_10460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014423.1"
                     /translation="MTEMLVREPELPDSAVVRVASEPPVERDMLLGRPLEDRSFEAVE
                     ATAAFAAGVAIGTVVAGPVGAVVGGLVGLSGGVVVGEALERAVGRAATTTDAAEHEPT
                     DSI"
     gene            1070..1447
                     /locus_tag="VIU37_10465"
     CDS             1070..1447
                     /locus_tag="VIU37_10465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014424.1"
                     /translation="MTAATEVRMMDEQAVREHAQAHVDALLAGDVERATEPFSESLRH
                     DLGSIMAQLPLPLTDGAVESVERGGSGYVAVLHLVGEADSRFRTRWKDRDGRPTLVEF
                     SHVAEAPADTSRDTDDAEAESRA"
     gene            1527..>3017
                     /gene="pgm"
                     /locus_tag="VIU37_10470"
     CDS             1527..>3017
                     /gene="pgm"
                     /locus_tag="VIU37_10470"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004614 - phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase
                     (alpha-D-glucose-1,6-bisphosphate-dependent)"
                     /protein_id="HEY6014425.1"
                     /translation="MTTSERAGRPADPSILVDVAGLVGAYYDRRPDPSIPAQRVAFGT
                     SGHRGSALDTAFNEAHIVATTEAICRYRQAQGIDGPLFIGRDTHALSEPAFRSALEVM
                     GAHGIDVRVDAADGYTPTPVISHAILTHNRGRRDRLADGIVVTPSHNPPEDGGFKYNP
                     PNGGPADTDVTGWIGEQANALLATAVERVERVPFERARAAATAHDYLGAYVGDLAEVI
                     DMDAIRTSGLRLGVDPLGGASVAYWPAIAERYGLDLTVTNDRVDPTFGFMTVDWDGRI
                     RMDPSSPYAMAGLVELRDRFDVCFANDTDADRHGVVTSGAGLLNPNHFLSASVAYLFG
                     GGRDWRPDVAVGKTLVSSAMLDRVAADLGRRLLEVPVGFKWFVAGLLEGSLGFGGEES
                     AGASFLRRDGTVWTTDKDGMIPCLLAAELTARTGRDPGQAYASLTERFGAPVYRRIDA
                     PATPAQKATLARLSPGEITTTTLAGEPLTGVLTTAPGNGAPIGGLKV"
BASE COUNT          403 a         1078 c         1092 g          444 t
ORIGIN      
        1 ctcgccgagg cgctgcgcgt ctcgcgccag accgtcaacg cgatcgagac gggacgctac
       61 ctgccgtcgt tgccacttgc cttcgccatc gcgcgctact tcggtcgccg catcgaggag
      121 atcttccatg acgacgctgt ctaggtggtt cgtgccggcg gccgggctcg ggctcggcat
      181 cctgatcgcg gcggctgagc tgcgtcgcag cgggagccct tggcaggcgg ccctcgcgtt
      241 cgtgatcgtc gccggctacg cgctggcgct ccgggcgttc cagacgcgat cggacgtcgc
      301 gagcgtgctg tccggcctgc cgcgcgacga gcgctgggaa tcgatcaacc tgcgggccct
      361 tgccctggcg gccgaggttc tggcggtggt cctcgtggtc gcgttcctgg gcgcgcggtt
      421 cagcggcggc gacgcgaaca cctacgcgtt tctcggggcg atcttcgctg cggtgtacct
      481 gggcggcctg gtctggtatc gcagccgctc ctgacctcgc gcgccgccgg ggggtgcccg
      541 tccagccctc cggttgggtc cattcggcac tcgcctgcga gtcctcgacg gcgttccatg
      601 accatggagg tcgagccatg acagagatgc tcgtcaggga acccgaactg cccgactccg
      661 cagtcgtccg cgtcgcgtcg gagccgccgg tggagcggga catgctcctg ggccggccac
      721 tcgaggatcg gagtttcgag gccgtggaag ccaccgccgc gttcgccgcc ggggtggcca
      781 tcggcacggt cgtcgccgga ccggtcggtg ccgtcgtggg cgggctcgtc ggcctgtccg
      841 gaggtgtcgt cgtcggcgag gcgctcgagc gggccgttgg ccgggcggcg acgacgaccg
      901 acgccgcaga gcacgaaccg accgattcga tctagccgac gcgccgctcg atccgtcccg
      961 ctttcggcgg cggcgccttc gtgcgaggtc cggtcccgcg atcgacacgg acgtgcaacg
     1021 tgccggcctc gtctcgttgg gctgaggggc agggcgatcg ggcatggtcg tgaccgccgc
     1081 aaccgaggtc aggatgatgg acgaacaggc agtccgcgag cacgcccagg cgcacgtcga
     1141 tgcgctcctg gccggtgacg tggagcgcgc caccgagccg ttcagcgaaa gcctgcggca
     1201 cgacctcgga tcgatcatgg cgcaactgcc cttgcccctg accgacgggg ccgtcgagtc
     1261 cgtcgaacgg ggcggttcgg gctacgtcgc ggtcctgcac ctcgtcggcg aggcggattc
     1321 ccggttccgg acgcgatgga aggaccgcga cgggaggccc acgctggtcg agttcagcca
     1381 cgtcgccgag gcaccggcgg acacgtcgcg cgacaccgat gacgccgagg cggaatcgcg
     1441 ggcctgagcg ggccacacgc ggccgacccc gcctgacgta gtctggagcc gtccccggta
     1501 ccccatcgac ccgtgcgagg agcgcgatga cgaccagcga gcgggccgga cggcccgccg
     1561 acccttcgat cctggtggac gtggccggcc tcgtcggcgc ctattacgac cggcgcccgg
     1621 atccctcgat cccggcccag cgggtggcct tcggtacgtc cggacaccgc gggtccgcgc
     1681 tggacaccgc cttcaacgag gcccacatcg tggccacgac cgaggccatc tgccgctacc
     1741 ggcaggccca ggggatcgac ggaccgctgt tcatcggccg cgacacgcat gccctttccg
     1801 agccggcctt ccggagcgcg ctcgaggtca tgggcgccca cgggatcgac gtcagggtcg
     1861 atgcggccga cggctacacc ccgacgccgg tgatctcgca cgcgatcctg actcacaacc
     1921 ggggtcgccg ggaccgcctg gcggacggga tcgtggtcac gccctcgcac aacccgcccg
     1981 aggacggcgg cttcaagtac aacccgccca acggcgggcc ggcggacacc gacgtcaccg
     2041 gctggatcgg cgagcaggca aacgcccttc tggccacggc ggtcgagcgg gtcgagcgag
     2101 tcccgttcga acgggcgcgc gccgccgcga ctgcccacga ctacctgggg gcctacgtcg
     2161 gcgatctcgc cgaggtcatc gacatggacg cgatccggac ctccggcctg cggctcggcg
     2221 tggatccgct cggcggggcg agcgtcgcct actggccggc gatcgccgag cgttacgggc
     2281 tcgacctgac cgtcaccaac gaccgggtcg atccgacatt cgggttcatg accgtcgact
     2341 gggacgggcg gatccggatg gacccgtctt ccccgtacgc gatggccggc ctggtggagc
     2401 tgcgcgaccg cttcgacgtc tgtttcgcga acgacaccga cgcggaccgc cacggcgtcg
     2461 tcacgtccgg ggccgggctg ctcaatccca accacttcct gtcggcgtcg gtggcctacc
     2521 tgttcggcgg cggccgggac tggcggccgg acgtcgccgt cggcaagacg ctcgtctcga
     2581 gcgcgatgct cgatcgggtc gcggcggacc tgggccgccg cctgttggag gtcccggtcg
     2641 gattcaagtg gttcgtggcc gggctcctgg agggatcgct cggattcggc ggcgaggaga
     2701 gtgccggggc ctcgttcctg cggcgcgacg gtaccgtctg gacgaccgac aaggacggca
     2761 tgatcccgtg cctgctagcc gccgagctga cggctcggac cgggcgcgac cccggccagg
     2821 cgtacgcgag cctgaccgag cggttcggcg ccccggtcta tcgccggatc gacgccccgg
     2881 ccacgccggc acagaaggcg acgctcgcac gcctgtcgcc gggcgagatc acgaccacga
     2941 cgctcgccgg tgagcccctg accggggtgc tcacgacggc gccggggaac ggcgcgccga
     3001 tcggcggcct caaggtc
//
LOCUS       DATDDI010000722         1502 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_202696, whole genome shotgun sequence.
ACCESSION   DATDDI010000722 DATDDI010000000
VERSION     DATDDI010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202696"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VIU37_10475"
     CDS             <1..196
                     /locus_tag="VIU37_10475"
                     /inference="COORDINATES: protein motif:HMM:NF024770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6014426.1"
                     /translation="VDPALTTVHQPIRQKGVDAVRLLLAEMELRSGNQPEHLRLETRL
                     IVRGSSGPVPPQRQEVRRQV"
     gene            354..>1502
                     /locus_tag="VIU37_10480"
     CDS             354..>1502
                     /locus_tag="VIU37_10480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014427.1"
                     /translation="MNQFRRLAVLAAGVLLVVSACGGGTPAPSTPAASQPGSSEAATT
                     APSAAPLTGTLTIWHSYGSSGGGSESAEVKGLNKILDWMKTNNPGLTINAINVDFGTM
                     YTNFEQESANGGGPDMFIGPNDNLGNEARGGYLVPLDGKIDATLANTSDVATNGSKVD
                     GKLYMVPESLKAVAMYYDASKVPTPPATTEDLLNFAKGGGKVGVLTEGYFGWGWYSAF
                     GGSIFDANGKCAATANSGVADALTYVDSLNDQPSAVVDSDYGKINDPFIAGNLDIIFN
                     GNWALGDYRKARAGLAVAPFPTGPGGAGKTMTGVDGWYINAAVSADQQALAIAAAQQM
                     VSQTAEQFMVDEAGHVPANKNITPTDPRVKAFTTAIYGGDPRPQSKEFS"
BASE COUNT          262 a          551 c          481 g          208 t
ORIGIN      
        1 cgttgacccc gccctgacga cggtgcatca gccgatccgt cagaaggggg ttgacgcggt
       61 ccggctcctt ctcgccgaga tggagctgcg gtcggggaat cagcccgagc acctccggct
      121 cgagacccgg ctcatcgtcc ggggctcgtc cgggccagtg ccgccccagc ggcaggaggt
      181 gcgacggcag gtgtgaggtc gatcggaacg cgcgacccga gtggcgcgcc gcccgaggcg
      241 tcccgctcac caggaccggc ttgggaccgg tccgccagcg ccggcatcgc cggtaccaac
      301 ggaagcggcg ggccccgtca gtgcccgacc cagtggagga gagaacactc tcgatgaacc
      361 aattcagacg actcgcggtc ctcgccgccg gcgtcctgct cgtcgtcagc gcatgcggcg
      421 gcggcacccc ggctccgagc actcccgcag ccagccagcc cggctccagc gaggccgcga
      481 ccacggcccc gtcggcggcg ccgctgaccg gcacgctcac catctggcat tcctacggct
      541 cgtccggcgg cggctccgag tccgccgagg tcaagggtct caacaagatc ctcgactgga
      601 tgaagaccaa caacccgggc ctcacgatca acgccatcaa cgtcgacttc ggcacgatgt
      661 acacgaactt cgagcaggag tccgcgaacg gcggcggccc cgacatgttc atcggcccca
      721 acgacaacct cggcaacgag gcccgcggtg gctacctcgt cccgctcgac ggcaagatcg
      781 acgcgaccct ggccaacacc agcgacgtcg cgacgaacgg ctcgaaggtg gacggcaagc
      841 tgtacatggt ccccgagtcc ctcaaggccg tggccatgta ctacgacgcc tcgaaggtcc
      901 cgacgcctcc ggcgacgacc gaggacctgc tcaacttcgc caagggcggc ggcaaggtcg
      961 gcgtcctgac ggagggctac ttcggctggg gctggtactc ggccttcggt ggctcgatct
     1021 tcgatgccaa tggcaagtgc gccgcgaccg ccaattcggg cgtcgccgac gcgctgacgt
     1081 acgtcgactc gctcaacgac cagccctcgg ctgtcgtcga ctccgactac ggcaagatca
     1141 acgacccgtt catcgcgggc aacctggaca tcatcttcaa cggcaactgg gccctcggcg
     1201 actaccgcaa ggctcgcgcc ggcctggccg ttgctccgtt cccgaccggc cccggcgggg
     1261 ctggcaagac gatgaccggc gtcgatggct ggtacatcaa cgcggccgtc tcggcggacc
     1321 agcaggcgct cgcgatcgcg gccgcccagc agatggtcag ccagactgcc gagcagttca
     1381 tggtcgacga ggccggccac gttccggcca acaagaacat cacccccacc gatccgcgcg
     1441 tgaaggcgtt cacgaccgcg atctacggtg gcgatcctcg cccgcagtcc aaggagttct
     1501 cg
//
LOCUS       DATDDI010000723         2382 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_15463, whole genome shotgun sequence.
ACCESSION   DATDDI010000723 DATDDI010000000
VERSION     DATDDI010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15463"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VIU37_10485"
     CDS             <1..346
                     /locus_tag="VIU37_10485"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014428.1"
                     /translation="LSLALMVVIGFGSILMAATANTTIQLAVPDQLRGRVMSVYTTVF
                     SASVPIGGLAMGAVASGFGASLAIALGGVLSVAVGLGALAWGRRDGFAIPEPASVGVR
                     SAVAGMSTARPR"
     gene            complement(396..1142)
                     /locus_tag="VIU37_10490"
     CDS             complement(396..1142)
                     /locus_tag="VIU37_10490"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY6014429.1"
                     /translation="MERLTNAHEFLDGPLDEPATLDGHLRDLRRINRWLGGARLSAAA
                     IDALAAHRAELTVLDVGTGGADLAVALARRARTRSRRLHVVGIDSRPEVLAAAVRLRG
                     GTGWADGADDVELHVGDGRDLRFADRSFDVAHASLVLHHLEPAVAVGVLREMGRIARL
                     GVVVNDLDRTRVGWVGAWLTGHLLTANRYTRHDAPLSVRRAYRPQEAAAMLYAAGLRP
                     VRVVRGRFAQRYAIAAMPAGDQSDPTGAGE"
     gene            1228..>2382
                     /locus_tag="VIU37_10495"
     CDS             1228..>2382
                     /locus_tag="VIU37_10495"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6014430.1"
                     /translation="MATRTDSRLVPSSDRAPSSWGLGDGQAIPWEYAPAPEARDLVTL
                     KERYGLFVNGRFVPASDGGTFATVDPATEEQLAVVARATTADVDRAVRAARRAQSRSW
                     GRLSGKERAKYLFRIARILQERSREFAVLESMDSGKPIKESRDVDVPLAAAHFWYYAG
                     WADKLEYAFPGRVARPLGVAAQIIPWNFPLLMLSWKIAPALAAGNTVVLKPASTTPLS
                     ALLFAEVCQEADLPPGAVNILTGPGEIGMSMVTHPGIDKVAFTGSTEIGKRIAQGVAG
                     TDKALTLELGGKAANIVFDDAPLDQAVEGIVRGVFFNQGHVCCAGTRLLLQESVADEL
                     LRKLKRRIATLRLGDPLDKNTDIGAINSRAQLEKIEGLVRSGVEEGAEIYQ"
BASE COUNT          321 a          876 c          856 g          329 t
ORIGIN      
        1 gctgtcgctc gcgctgatgg tggtcattgg cttcggctcg atcctcatgg cggcgaccgc
       61 caacaccacg atccagctgg ccgtgcccga ccagctccgc ggccgcgtca tgagcgtcta
      121 cacgaccgtg ttcagcgcgt ccgtgccgat cggcggactg gccatgggtg ccgtggcgtc
      181 cgggttcggt gcctcgctgg cgatcgcgct cggcggcgtc ctcagcgtcg ccgtcggcct
      241 gggcgcgctg gcgtggggtc ggcgggacgg gttcgcgatc ccggagccgg catcggtcgg
      301 agtccggtcg gcggtcgcgg gcatgtcaac cgcccggccg cgctgatcgc gccgcggcgc
      361 cacggccgcc gaggcgtgcg accgggcccg gagcctcact cgccggcccc ggtcgggtcc
      421 gactgatcgc cggcgggcat ggccgcgatc gcgtaccgct gggcgaaccg gccgcggacc
      481 acccggaccg gtcgcaggcc ggctgcgtac agcattgccg ccgcctcctg cggccgatag
      541 gcccggcgga ccgacagcgg ggcgtcgtgc cgcgtgtagc ggttcgcggt cagcaagtgc
      601 ccggtcagcc aggcgccgac ccagcccact ctggtccggt cgaggtcgtt gaccaccacc
      661 ccgaggcgcg cgatccgtcc catctcgcgc aggacgccga cggcgaccgc aggctccagg
      721 tggtgcagca ccaacgaggc gtgggccacg tcgaacgagc gatcggcgaa tcggaggtcc
      781 cggccgtcgc cgacgtggag ctcgacgtcg tcggccccgt cggcccagcc ggttccgccg
      841 cgcagccgga cggccgccgc gagcacctcg ggacggctgt cgataccgac gacgtggagg
      901 cgccggctcc tggttcgcgc tcggcgggcc agcgccaccg cgagatccgc gcccccggtc
      961 ccgacgtcga gcaccgtcag ttcggcccga tgggcggcca gggcgtcaat cgccgccgca
     1021 ctcagacggg cgccgccgag ccagcggttg atccgccgca ggtcgcgcag gtgcccgtcc
     1081 agcgtggccg gctcgtccag tgggccgtcg aggaactcgt gggcgttggt gaggcgctcc
     1141 atcccggcgg aggctacacg aacgcgcaat cgcccccgat cgcgggccgc agccgggtgc
     1201 ccgaaggtcg gtgacataat ggccgccatg gcgacccgga cggattcccg tctcgttcct
     1261 tcctccgatc gcgctccctc gagctggggg ctcggcgatg ggcaggccat cccctgggag
     1321 tacgccccgg cgcccgaggc acgggacctg gtcacgctca aggagcgcta cgggctgttc
     1381 gtcaacggcc ggttcgtacc cgcgtcggac ggcggcacct tcgccaccgt ggatcccgcc
     1441 acggaggagc agctggccgt cgtcgccagg gcgaccacgg ccgacgtcga tcgggccgtt
     1501 cgcgccgcgc gccgcgcgca gtcgaggagc tggggccgcc tgtccggcaa ggaacgcgcg
     1561 aagtacctgt tccggatcgc ccggatcctc caggagcggt cgcgcgagtt cgccgtcctc
     1621 gaatcgatgg actccggcaa gccgatcaag gagagccgcg acgtcgacgt ccccctcgcc
     1681 gcggcgcatt tctggtacta cgccggctgg gccgacaagc tcgagtacgc gttcccgggt
     1741 cgcgtcgcgc gtccgctcgg tgtcgcggcc cagatcatcc cctggaactt cccgctgctg
     1801 atgctgtcgt ggaagatcgc cccggccctc gccgccggca acacggtcgt cctgaagccc
     1861 gcgtccacga ccccgctctc agccctgctc ttcgccgaag tgtgccagga ggcggacctc
     1921 ccgccgggcg ccgtcaacat cctcaccgga cccggcgaga tcgggatgtc gatggtcacc
     1981 cacccaggca tcgacaaggt cgcgttcacc ggctcgaccg agatcggcaa gcggatcgcc
     2041 cagggcgtgg cgggcacgga caaggcgctc acgctggagc tcgggggcaa ggccgccaac
     2101 atcgtgttcg acgacgcgcc gctcgaccag gcggtcgagg gcatcgtgcg cggcgtgttc
     2161 ttcaaccagg ggcacgtctg ctgcgccggc acccggctgc tgctgcagga gtccgtggcc
     2221 gacgagctgc tgcgcaagct gaagcggcgc atcgcgacgc tgcggctcgg cgacccgctc
     2281 gacaagaaca ccgacatcgg cgccatcaac tcgcgcgcgc agctcgagaa gatcgagggg
     2341 ctggtgcgct cgggtgtcga ggagggcgcg gagatctacc ag
//
LOCUS       DATDDI010000724         1623 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_743472, whole genome shotgun sequence.
ACCESSION   DATDDI010000724 DATDDI010000000
VERSION     DATDDI010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743472"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1097
                     /locus_tag="VIU37_10500"
     CDS             126..1097
                     /locus_tag="VIU37_10500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014431.1"
                     /translation="MTGEPRPTGATPPTAPTAPLATTASSATGSIFDLGYRGYDGARL
                     GRRHAIYALFVYSLRSAYGIGRSGRAKIVPIGLAVLATLPAVISIAVRAFAAQAGAGA
                     EVERIDPIRYSSYYGYISTIVMLFVAAQAPELLGRDQRYRVLSLYFSRALLRADYAVA
                     KAAAFATAILILILIPQAVIFVGLVISDPDLMAALGDNVGSLGPAVAVALMIAGLLGS
                     IGLAVSAFTPRRAYATAAIMAIFIVPGVIAQLVIRSTTSGLTRYIVLTAPGSVIEGVN
                     GFLFGTKPGAREVVQANLAGALYVAVAIGVAVVLFGVLLQRYQRIEA"
     gene            1094..>1623
                     /locus_tag="VIU37_10505"
     CDS             1094..>1623
                     /locus_tag="VIU37_10505"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014432.1"
                     /translation="MTAVVGPAASPAQPAPAGPAIELSEVSRWYGNVVAVNEVSFALG
                     PGVTGLLGPNGAGKSTLLHMMAGLLRPSHGTVKVFGRPTWLDPDIYRQVGLVPEREAV
                     HGYLTGRQFALFNAQLQRLPDPEGAATRALEAVDLVDVQHRQIGTYSKGMRQRAKIAA
                     ALVHDPQVLLLDEPFNG"
BASE COUNT          207 a          601 c          559 g          256 t
ORIGIN      
        1 ttcgacgtcg tccgggacgc ggtggtcgac ctcggcctgc cgctggtccg gctcgagcac
       61 gaacgccgct cgctcgagga tctcttccgc gatcgaccgg ccgacgagcc cgcggtgacc
      121 gtgcgatgac cggcgaacca cgcccgaccg gcgccacccc gccgaccgcg ccgaccgccc
      181 cgctcgcaac gaccgcgtcg tccgcgaccg gcagcatctt cgatctcggc tatcgcggct
      241 acgacggggc gcggctcggc cgccggcatg ccatctacgc gctgttcgtg tacagcctgc
      301 gatcggcgta cgggatcggg cgcagcgggc gggccaagat cgtcccgatc ggcctggcgg
      361 tgctggccac gctgccggcc gtgatcagca tcgcggtccg cgccttcgcc gcgcaggcgg
      421 gggcgggtgc cgaggtcgag cggatcgatc cgatccggta cagctcctac tacggctaca
      481 tctcgacgat cgtgatgctg ttcgtggccg cccaggcacc ggagctgctc ggccgcgatc
      541 agcgctaccg cgtgctgtcc ctctacttct cccgggcgct gcttcgcgcc gactacgccg
      601 tggccaaggc ggcggcgttc gcgacggcga tcctcatcct catcctgatc ccgcaggcgg
      661 tcatcttcgt cgggctcgtg atctcggacc ccgacctgat ggccgcgctc ggcgacaacg
      721 tcgggtcgct cggaccggcg gtcgccgtcg cattgatgat cgcgggcctg ctcggctcga
      781 tcgggctggc cgtctcggcg ttcacgcccc gccgggcata tgcgaccgcg gcgatcatgg
      841 ccatcttcat cgtgcccggc gtgatcgccc agctggtgat ccgctcgacc accagcgggc
      901 tgacccgata catcgtgctg acggcaccgg gctcggtgat cgagggggtg aacggcttcc
      961 tgttcgggac gaagcccggg gctcgtgagg tcgtccaggc caacctcgca ggcgcgctct
     1021 acgtcgcggt cgcgatcggg gtcgccgtgg tcctgttcgg ggtgctcctc cagcgctacc
     1081 agcggatcga ggcatgacgg ccgtcgtcgg cccggccgcg agccccgccc agccggcgcc
     1141 cgccggcccc gcgatcgagc tcagcgaggt ctcgcgctgg tacggcaacg tggttgccgt
     1201 caacgaggtc tcattcgcac tcggtcccgg cgtgaccggg ctcctcgggc cgaacggcgc
     1261 cgggaagtcg accctgctcc acatgatggc cgggctgttg cggccgtccc acggcaccgt
     1321 caaggtcttc ggccggccca cctggctgga tccggacatc taccggcagg tgggcctggt
     1381 gccggagcgc gaggccgtcc acggctacct gacgggccgc cagttcgcct tgttcaacgc
     1441 ccagctccaa cgcctgcccg atccggaggg ggcagccacg cgggcgctcg aggcggtcga
     1501 cctggtcgac gtccagcacc gccagatcgg gacctactcg aaggggatgc gccagcgggc
     1561 gaagatcgcc gcggccctcg tccacgaccc gcaggtgctg ctgctcgacg agccgttcaa
     1621 cgg
//
LOCUS       DATDDI010000725         1507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_98627, whole genome shotgun sequence.
ACCESSION   DATDDI010000725 DATDDI010000000
VERSION     DATDDI010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98627"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..824
                     /locus_tag="VIU37_10510"
     CDS             <1..824
                     /locus_tag="VIU37_10510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014433.1"
                     /translation="LGQSFGGFTSMTYLSIAPEGLREAFLTGGLSPIGRPVDDIYGAT
                     YRRLIDKNRRYFARYPDDRARVRDILRRLDDEEVRLPSGDRLTGRRFRQLGLWLGDSA
                     GFELLHHVTELPFKSLAFLHDAEHGVKFERNPIYATLHESSYADGVATRWSAHRLLPD
                     EVEAEGFFTAEHVFPWMWEDYGGLVPQREAAELLAQHPWPALYDADRLRRNEVPVAAT
                     IYANDLYVERDFAIETAATIRGLRAWQTDEYEHNGLRADGERVLGRLIDLVRGRA"
     gene            complement(821..>1507)
                     /locus_tag="VIU37_10515"
     CDS             complement(821..>1507)
                     /locus_tag="VIU37_10515"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6014434.1"
                     /translation="LLAKTATTLDVISGGRAILGLGAAWNDVEHDGYGFEFPPVRERM
                     DRLDEALTIIRAMFTEERPSFEGRHYRVHDVLNVPRPVQPGGPRVLVGGGGEQRTLRI
                     AAKHADMTHWFPLGLDVLRRKTEILEGYCEAIGRDPATIERTMAAPVIVVGSDAEREA
                     YLERMPPERRPYLQAGRPEAMAEALRPYLDAGFTGFTFNNTYYRTPEQIGQVGELLRL
                     VAGPEPVVAS"
BASE COUNT          212 a          534 c          533 g          228 t
ORIGIN      
        1 tgctcggcca gagctttggc gggttcacct cgatgaccta cctgtcgatc gccccggagg
       61 ggcttcgcga ggcgttcctg accggcgggc tgtcgccgat cgggcggccc gtcgacgaca
      121 tctacggcgc cacctaccgc cgtctgatcg acaagaatcg gcgctacttc gcacgctacc
      181 cggacgatcg ggcgcgcgtc cgcgacatcc tccggcgtct cgacgacgag gaggtacggc
      241 tgccgtcggg cgaccggttg acgggccggc ggttccgcca gctcgggttg tggctgggcg
      301 acagcgccgg cttcgagctg ctccaccacg tcaccgagct gccgttcaaa tcgctggcct
      361 tcctccacga cgcggagcac ggggtcaagt tcgagcggaa cccgatctac gccacgcttc
      421 acgagtcgtc gtacgcggac ggcgtggcga cgaggtggtc ggcgcaccgg ctcctgccgg
      481 acgaggtcga ggccgagggg ttcttcaccg ccgagcacgt cttcccatgg atgtgggagg
      541 actacggcgg gttggtcccg cagcgcgagg ccgccgagct cctcgcccaa catccctggc
      601 cggccctcta cgacgcggac cggctgcgcc ggaacgaggt cccggtggcg gccacgatct
      661 acgccaacga cctgtacgtc gagcgcgact tcgccatcga gacggcagcc acgatccggg
      721 gcctgcgcgc ctggcagacg gacgagtacg agcacaacgg cctgcgggcc gacggggagc
      781 gggtcctcgg ccggttgatc gatctcgtcc gcggtcgggc ctagctcgcg acgaccggct
      841 cgggaccggc gaccagccgc agcagctccc cgacttgccc gatctgttcg ggcgtccggt
      901 agtacgtgtt gttgaaggtg aacccggtga acccggcgtc gaggtaggga cgcagcgcct
      961 cggccattgc ctccggccgc ccggcctgca ggtacggccg ccgttcgggc ggcatgcgct
     1021 cgaggtatgc ctcacgctcg gcgtcggagc cgaccacgat gacgggagcg gccatggtcc
     1081 gctcgatcgt ggcgggatcg cgcccgatcg cctcgcagta cccctccagg atctcggtct
     1141 tgcgccgcag gacgtcgagc ccgagcggga accagtgggt catgtcggcg tgcttcgccg
     1201 cgatccgcag cgtccgctgc tcgcccccgc cgccgaccag gacgcgcgga ccacccggct
     1261 ggaccggtcg cggcacgttg aggacgtcgt ggacccggta gtggcggccc tcgaagctgg
     1321 ggcgctcctc ggtgaacatc gcccggatga tcgtgagcgc ctcgtccagc cggtccatcc
     1381 gctcgcggac cggcgggaac tcgaagccgt agccgtcgtg ctcgacgtcg ttccaggcgg
     1441 ccccgagccc gaggatcgca cggccaccgg agatgacgtc gagggtggtc gccgtcttgg
     1501 ccagcag
//
LOCUS       DATDDI010000726         2088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_660547, whole genome shotgun sequence.
ACCESSION   DATDDI010000726 DATDDI010000000
VERSION     DATDDI010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660547"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1025
                     /locus_tag="VIU37_10520"
     CDS             <1..1025
                     /locus_tag="VIU37_10520"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY6014435.1"
                     /translation="RLHPLSRPEQPKPFLRLVTGETLLQGTVARLAGVTDDVTIVTDR
                     RYERLVRTQLPGVPMLLEPLGRNTAAAIALAALAIDRPDDEVMLVLPADQAVERGSVF
                     AEILRAAAEGLATGAFGVDDPLVTLGIRVDRPATEYGYLVPDLTRGAVVRGLEGYPLQ
                     RFTEKPKPAEAEELMLQPGVAWNAGIFLWRRRAIVAALRRYTGLVQSLGPMVSSPQML
                     DRAYESIQRAVSIDYAVMESAARNGSVVMASMDVGWSDLGSWTSLLAAIGARGSGSVV
                     QAGETVPVEADDLVVRRVGGHLGVIAPPERGSITATQPLAVLRGSGPDLAIVEALIER
                     CSVPEV"
     gene            1028..>2088
                     /locus_tag="VIU37_10525"
     CDS             1028..>2088
                     /locus_tag="VIU37_10525"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase/phosphomannomutase family
                     protein"
                     /protein_id="HEY6014436.1"
                     /translation="MTLVRHAPQPTTIVFGTDGWRARIADEFTFDAVRRCADGVASYV
                     VGRGEAAKGVVIAYDRRFASEHFAAAAAEVLLARDIPVAFAAHAVPTQMSSFEVIQRG
                     AAAGIVITASHNPWVDNGFKVKAPTGAAAGADILGVIETRLAVNGTEAIARRPFADAE
                     AAGLVERFDPYDGYERFVRQTVDLDALRAADLSVLVDPMWGAGSGWLSRLLAGGRIRV
                     TELHQERNPYFGGVNPEPIRPNIDEALGMMAGGGFDLGLLLDGDADRAGAMDERGTFI
                     HQLQVTGLLMYYLAEHRGWRDPVVVSVNNTSMAARLGEHYGIATFETPVGFKYIGPKM
                     NETGAMMGAEESGGFGFGM"
BASE COUNT          281 a          743 c          762 g          302 t
ORIGIN      
        1 cgcggctcca tcccctcagc cgcccggaac agcccaagcc gttccttcgc ctcgtgaccg
       61 gcgagacgct gctccagggc accgtcgccc gcctcgcggg cgtcaccgat gacgtcacga
      121 tcgtcaccga ccggcgctac gagcggctcg tccggaccca gctccccggc gtgccgatgc
      181 tgctcgagcc actcgggcgc aacacggcgg ccgcgatcgc cctggcggcg ctggccatcg
      241 accgccccga cgacgaggtc atgctcgtgc tgccggcgga ccaggccgtc gagcggggat
      301 cggtcttcgc ggagatcctg cgcgccgcgg ccgagggcct cgcgaccggc gcgttcggtg
      361 tcgacgaccc gctggtcacg ctgggcatcc gggtcgatcg ccccgccacc gagtacggct
      421 acctggtccc ggacctgacc cggggcgcgg tggtccgcgg gctggagggc tatccgctcc
      481 agcggttcac ggagaagccg aagccagccg aagccgagga gctgatgctg cagccagggg
      541 tcgcgtggaa cgccggcatc ttcctgtggc ggcgccgggc gatcgtcgcc gcgctccgcc
      601 gctacaccgg cctggtccag tcgctcgggc cgatggtctc gtcgccgcag atgctggacc
      661 gcgcgtatga atcgatccag cgcgccgtct cgatcgacta cgcggtgatg gagagcgccg
      721 cgcgcaacgg gtcggtcgtc atggcctcga tggacgtcgg ctggtccgac ctcgggtcgt
      781 ggacgtccct cctggcggcg atcggcgcgc gtgggagtgg ctcggtcgtc caggccggcg
      841 agacggtacc cgtcgaagcc gacgacctcg tcgtgcggcg cgtcggcggc cacctcggag
      901 tcatcgctcc gcccgagcgc ggtagcatca ctgcgacgca gccgctggcc gtgctgcgcg
      961 gctcgggtcc ggacctggcc atcgtcgagg cgctgatcga gcgctgctcc gtcccggagg
     1021 tttgatcttg acgctcgtcc gccacgcgcc ccagcccacg accatcgtct tcggcacgga
     1081 cggctggcgc gccaggatcg ccgacgagtt cacgttcgac gccgtccggc ggtgtgccga
     1141 cggcgtggcg agctacgtcg tcgggcgtgg cgaggccgcc aagggcgtgg tgatcgcgta
     1201 cgaccggcgg ttcgcctccg agcatttcgc ggctgccgcg gcggaggtcc tgctggcgcg
     1261 ggacatcccg gtcgccttcg ccgcgcacgc ggtcccgacc cagatgagct cgttcgaggt
     1321 gatccagcga ggcgcggcgg ccgggatcgt catcaccgcc agccacaatc cctgggtcga
     1381 caacgggttc aaggtcaagg cgccgacggg ggccgcggcc ggggccgaca tcctcggggt
     1441 gatcgaaacc cggctggccg tcaacgggac cgaggcgatc gcccggcgcc cgttcgccga
     1501 cgccgaggcc gccgggctgg tcgagcggtt cgatccgtac gacgggtacg agcgcttcgt
     1561 ccggcagacc gtcgacctcg acgcgctccg cgcggccgac ctcagcgtcc tggtcgaccc
     1621 gatgtggggc gccggcagcg gctggctgtc acgcctcctg gcgggcgggc ggatccgggt
     1681 caccgagctc caccaagagc gcaacccgta cttcggcggg gtcaacccgg agccgatccg
     1741 gccgaacatc gacgaggcgc tcgggatgat ggccggcggg gggttcgacc tcgggctcct
     1801 gctcgatggt gacgcggacc gcgccggggc gatggacgag cgcgggacgt tcatccacca
     1861 gctgcaggtg accggcctgc tgatgtacta cctcgccgag caccgtggct ggcgggaccc
     1921 ggtcgtcgtc agcgtcaaca acacctccat ggcggcgcgg ctcggcgagc actacggcat
     1981 cgcgacgttc gagaccccgg tcggcttcaa gtacatcggt ccgaagatga acgagaccgg
     2041 ggcgatgatg ggtgcagaag agtccggcgg gttcgggttc gggatgca
//
LOCUS       DATDDI010000727         6317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_452095, whole genome shotgun sequence.
ACCESSION   DATDDI010000727 DATDDI010000000
VERSION     DATDDI010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 6317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6317
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452095"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VIU37_10530"
     CDS             <1..470
                     /locus_tag="VIU37_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014437.1"
                     /translation="AQRVKLSTELSRRATGRTFYVLDEPTTGLHFADVEKLLQVLHRL
                     VDAGNTVMVIEHNLDVIKTADWIVDLGPEGGDRGGRIIAEGTPEQVARAGESATGEYL
                     ARVLRGEPLVPLSDVTFADEAGRGASRNGTGNGRSRKPVPIASRKRASAARAG"
     gene            498..950
                     /locus_tag="VIU37_10535"
     CDS             498..950
                     /locus_tag="VIU37_10535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014438.1"
                     /translation="MPDIDFAFLADAAETVPGQKFHVLGGGVARIGGRRFPLRHPHLA
                     LVIGLQVTAPETDREHEIRFVLLDPDGGEVAGATGSLSARSQRDGRDAVLTFSIDLWN
                     LTFAAPGDYSFRILVNGSERKRLPLLLLKPADTTGTAGDGMGTKPADD"
     gene            943..1293
                     /locus_tag="VIU37_10540"
     CDS             943..1293
                     /locus_tag="VIU37_10540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014439.1"
                     /translation="MTEGGTSRSRADLPARHERPVIDDAALLAARHADRLLGEARARG
                     LTRWVTYLAPLPDRLRDDHLGELRATALRSRAAYGVKDSVRDVLPPELTEPFLVSIDR
                     LIRELNREAHRTRS"
     gene            complement(1262..2905)
                     /locus_tag="VIU37_10545"
     CDS             complement(1262..2905)
                     /locus_tag="VIU37_10545"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEY6014440.1"
                     /translation="MDLHPSVADRLTRLAPDQRAAATAPPGPVLCVAPAGSGKTTTLV
                     ARIAWLVASGTARPGEIAAITFNTRAADEMRERLDPALEPLGVAAGAVRVRTFHALGL
                     EVLRTTGDPLPALVDRESILRTVWPDATAAELGRLDTAFSRLKLELQVEAGAIAGDPD
                     AGPLARAFVAYEAALAEAGAMDFDDLVRRSLRALRESPALLADWRARCRHLLVDEVQD
                     VDRSQLDLALLLAAPDDSLFCVGDDDQSIYGWRLADVRRILDLGDRLPGLSRVDLEVN
                     YRCPSPVVTRAVRLVEHNGERFAKRIRAGPAATGRLVLAPDAADETVRLRRAIGTWPD
                     DGSTRAILARTNRELLPAVAVALELGLPFRAPRVELLLDSPLLDATLGRAEADARGRP
                     GEPLLLTLGRLRATSVPGSAEEDLATALLGWAVGHDAYGAFVAAIRQARARLAELRRD
                     DAALTLATAHATKGLEFDHVVVTGMEAGRFPSARTVAEADDPSRALEEERRLAYVAWT
                     RARRSLTILYDPAIPSPFLLEAFTADELGLNSASGAPPG"
     gene            2977..4830
                     /gene="uvrC"
                     /locus_tag="VIU37_10550"
     CDS             2977..4830
                     /gene="uvrC"
                     /locus_tag="VIU37_10550"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: protein motif:HMM:NF001824.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEY6014441.1"
                     /translation="MTPELESALAKLPDRPGVYLMKDARGDVVYVGKAQSLKHRVRSY
                     WQKGNTGPLEGHRIRAVLDRIVDVEVTQTDSVSEALLLEMHLIKRYRPRFNVRLKDDK
                     SYPYIKVTLADDFPRVERTRKLVNDGSRYFGPYGSASSVDESMNLVRRLFPFRTCTIE
                     IRDGERALQRPCLLYHIKRCQGPCIQAISKDAYRADIEQVELFLEGRQESLVRALGRE
                     MHAAAERTEYERAAVMRDKIRAIERTMESQKMAAFARTELDLVGLARQDNQAAIQLFV
                     IRDGKMIGRDVFLLDAVKEAQDDEVLTSFLEQYYTQAASIPREVYVPSASLDTAALET
                     FLAERRGGPVHLRVPQRGEKRELLALATRNAGETLAREQARWLADQGKTLAALEELAA
                     ALDLAGPPHRIECYDISNFQGAESVGSMVVFEDGKPRSGEYRRFRIKTVSGPNDFASH
                     QEVLRRRFRAVRAGEEGSEEERRWAMPDLVLIDGGKGQVSAAKEALDEIGLHDLPLAG
                     LAKEREELFLPGRSDPIVLPATSPALYLVQRLRDEAHRFAITYHRGLRAKRAVRSAFD
                     DLPGVGPKRKRELLKVFGSIKRVRDAPVEQIAAVPGIGPALATRIKATLEA"
     gene            4894..6255
                     /gene="secD"
                     /locus_tag="VIU37_10555"
     CDS             4894..6255
                     /gene="secD"
                     /locus_tag="VIU37_10555"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEY6014442.1"
                     /translation="MRRAGPFIILIIGVLALFVDFLPGLAVPDPNSVDGSWRKLETKL
                     GLDLKGGLRVEYQAQPVEGRSPSSGDMSIIKDIVERRVNGSGVSEPVVTTQGSDRVVV
                     EMPGVTDPEAIRSLIGQTGRLDFVPLGKTSAQAGQTLDLKANPPLFSGDQVQSATIGQ
                     DPSGGLAVDFVLKGDGASLFATYTAAHVGDYFAITLDSSVISAPVIQNSIPGGNVQIS
                     AGGLGGFSAKEANNLVTVLKYGSLPFPIKELSSDQISATLGSQFLDQSLLAGAIGILL
                     VITFMITYYRLTGLVASFALVYYTLVMYAIFRLVPVTLTLAGVAGFVLSVGMAVDANI
                     LIFERMKEELRLGKSLASAVEAGFNRAWNSILDSNVSSLITASILYFFGSSVIQGFAL
                     VLILGVLVSMFSAITVTRSILRIVVAQDWARKAWLYGVSDAEFTARPTGRRRALRGEA
                     GGV"
BASE COUNT          935 a         2224 c         2266 g          892 t
ORIGIN      
        1 aggcgcagcg ggtgaagctc tcgaccgagc tgtcgcgccg ggcgaccggc cggaccttct
       61 acgtcctcga cgagccgacg accggcctgc acttcgcgga cgtcgagaag ctcctgcagg
      121 tcctccatcg cctcgtcgac gcgggcaaca cggtgatggt catcgagcac aacctcgacg
      181 tgatcaagac cgccgactgg atcgtcgacc tggggcccga gggcggcgat cggggcggcc
      241 ggatcatcgc cgaggggacg cccgagcagg tggcacgggc cggcgaatcg gcgaccggcg
      301 agtacctcgc gcgcgtactg cgcggcgagc cgctcgtgcc gctgtccgac gtgacgttcg
      361 ccgacgaggc gggccgcggg gcgtcgcgga acggaacggg caacggccgg tcacggaagc
      421 cggtgccgat cgcctcgcgc aaacgggcga gcgccgcgcg ggctggctga gtcccgacgg
      481 gcgcgtacca tccacgcatg cccgacatcg acttcgcctt cctcgccgac gccgccgaga
      541 ccgttcccgg ccagaagttc catgtcctcg gcggcggggt cgcgcggatc ggcggccgtc
      601 gcttcccgct gcgccatccg catctcgcgc tggtgatcgg gctccaggtc accgccccgg
      661 agacggaccg cgagcacgag atccggttcg tgctcctgga tccggacggc ggcgaggtcg
      721 ccggggcaac cggcagcctc tccgcccgga gccagcgcga cggccgtgac gccgtcctca
      781 ccttctcgat cgacttgtgg aacctgacct tcgccgcgcc gggggactac tcgttccgga
      841 tcctggtcaa cgggtccgag cgcaagcggc tgccgctcct gttgctcaag ccggccgaca
      901 cgacgggcac cgccggggat gggatgggaa ccaagccggc ggatgactga gggcgggacg
      961 agccggtcca gggccgacct cccggcccgc cacgagcggc cggtcatcga cgacgccgcg
     1021 ctgctggcgg cgagacatgc cgatcggctg ctcggcgagg cgcgggcgcg gggactgaca
     1081 cgctgggtca cgtacctcgc gccgctgccc gaccggctgc gggacgatca tctgggcgag
     1141 ctccgcgcga cggcgctgcg gagccgggcc gcctacgggg tcaaggattc ggtccgcgac
     1201 gtcctgccgc ctgagctgac cgagccgttc ctggtgtcga tcgatcgcct catccgcgag
     1261 ctcaaccggg aggcgcaccg gacgcggagt tgagtccaag ctcgtccgcc gtgaatgcct
     1321 cgagcaggaa cggcgagggg atcgcggggt cgtacaggat ggtcaggctg cggcgcgccc
     1381 gggtccaggc tacgtaggcg agtcgccgtt cctcctccag cgcccgggaa gggtcatcgg
     1441 cctccgccac ggttcgggcg ctcggaaagc gacccgcctc catgccggtc accacgacgt
     1501 ggtcgaactc gaggcccttc gtggcgtgcg cggtcgccag cgtcagggcg gcatcgtccc
     1561 gtcggagctc ggccagccgg gcgcgggcct gccggatcgc tgcgacgaac gcgccgtacg
     1621 catcgtggcc aacggcccag cccaggagcg ctgtcgccag gtcctcctct gcggagccag
     1681 ggacactcgt ggcccggagc cgcccgagcg tgagcaacag gggctcgccc gggcggcctc
     1741 gtgcgtcggc ctcggcgcgg ccgagcgtgg cgtcgagcag cggcgagtcg aggagcagct
     1801 ccacgcgcgg ggcgcggaat gggagtccga gctcgagggc gacggcgacc gcggggagga
     1861 gctcgcggtt ggtgcgggca aggatcgccc gcgtggagcc atcatccggc caggtcccga
     1921 tcgcgcggcg gagccggacc gtctcgtccg cggcgtcggg ggccagcacc aggcgaccgg
     1981 ttgcggcggg tccggcccgg atccgcttcg cgaagcgttc gccgttgtgc tccacgagtc
     2041 gtacggctcg cgtcacgacc ggcgacgggc agcggtagtt gacctcgaga tcgacccgtg
     2101 acaggccggg caaacggtcg cccaggtcaa ggatccggcg gacgtcggcg aggcgccagc
     2161 cgtagatcga ctggtcgtcg tcgccgacgc agaacaggga gtcgtccggg gcggccagca
     2221 ggagggcgag gtccagctgg ctccggtcga cgtcctggac ctcgtcgacg agcaggtgcc
     2281 ggcagcgggc ccgccagtcg gccagcaggg cgggcgactc gcgcagcgcg cgcagggagc
     2341 ggcggaccag gtcgtcgaag tccatcgcgc cggcttcggc gagggcggcc tcgtaggcca
     2401 cgaacgcccg ggccagcggg ccggcatccg gatcgcccgc gatcgcgccg gcctccacct
     2461 ggagctcgag cttgagccgg ctgaacgcgg tgtcgaggcg accgagctcg gccgccgtcg
     2521 cgtcgggcca gaccgtccgg aggatcgact cgcggtcgac gagggcgggc aggggatcgc
     2581 cggtcgtgcg cagcacctcc agaccgagcg cgtggaacgt ccggacgcgg acggcgccgg
     2641 cggccacgcc gagcggctcg agggccggat cgagccgctc gcgcatctcg tccgcggctc
     2701 gcgtgttgaa ggtgatggcg gcgatctctc cgggccgcgc ggtgccggat gccacgagcc
     2761 aggcgatccg ggccacgagc gtcgtcgtct tgccgctccc ggccggggcc acgcacagca
     2821 ccggacccgg cggggcggtg gcggccgcgc gctggtcggg tgccagccgc gtgagccgat
     2881 ccgcgacgga cgggtggagg tccatcccgg cagtctcgcg acgcccggtc atccgggact
     2941 taccggccca tgccgatttc gccgtacgat cgtgtcgtga cccccgagct cgaatccgcc
     3001 ctcgccaagc tgcccgaccg gcccggcgtc tacctgatga aggacgcccg cggcgacgtc
     3061 gtctacgtcg gcaaggcgca gagcctcaag caccgcgtcc gctcgtactg gcagaagggc
     3121 aacaccggcc cgctcgaagg ccaccggatc cgggccgtgc tcgaccggat cgtcgacgtg
     3181 gaggtgaccc agaccgactc ggtgtccgag gcgctcctcc tcgagatgca cctgatcaag
     3241 cgctaccggc cgcgcttcaa cgtccggctc aaggacgaca agagctaccc gtacatcaag
     3301 gtcaccctgg ccgacgactt cccgcgcgtc gagcggacgc ggaagctggt caacgacggg
     3361 agccgctact tcgggcccta cgggtcggcg tcgagcgtgg acgaatcgat gaacctcgtc
     3421 cgccggctct tcccgttccg tacctgcacg atcgagatca gggacggcga gcgcgccctc
     3481 cagcgaccgt gcctgctcta ccacatcaag cgctgccagg gcccgtgcat ccaggcgatc
     3541 tcgaaggacg cgtacagggc cgacatcgag caggtcgagc tcttcctgga gggccgccag
     3601 gaatcgctgg tcagggcgct cggtcgcgag atgcacgccg cagcagagcg gaccgagtac
     3661 gagcgcgccg ccgtgatgcg cgacaagatt cgggccatcg agcggacgat ggagagccag
     3721 aagatggccg ccttcgcgag gaccgagctc gacctcgtcg gccttgcgcg gcaggacaac
     3781 caggcggcga tccagctgtt cgtgatccgc gacgggaaga tgatcgggcg ggacgtcttc
     3841 ctgctcgacg cggtcaagga ggcgcaggac gacgaggtcc tgaccagctt cctcgagcag
     3901 tactacacgc aggccgcctc gatcccgcgc gaggtctacg tgccgtccgc gagcctcgat
     3961 accgccgccc tcgagacgtt cctcgccgag cgccggggcg gtcccgtcca cctccgggtc
     4021 ccgcagcgcg gggagaagcg cgagctcctc gcgctggcga cgcgcaacgc cggggagacg
     4081 ctcgcccgag agcaggcgcg ctggctggcg gaccagggca agaccctggc cgcactcgag
     4141 gagctggccg cggcgctcga cctggcggga ccgccgcacc ggatcgagtg ctacgacatc
     4201 agcaacttcc agggcgccga gtcggtcggg agcatggtcg tcttcgagga cggcaagccg
     4261 cggtcggggg agtaccgccg cttccggatc aagacggtga gcggcccgaa cgacttcgcc
     4321 tcccaccagg aggtcctgcg ccgccgcttc cgggccgtcc gggcgggcga ggaggggagc
     4381 gaggaggagc gtcgctgggc gatgccggac ctggtgctca tcgacggcgg caaggggcag
     4441 gtcagcgccg cgaaggaggc gctcgacgag atcgggctcc acgacctgcc gctggccggc
     4501 ctggccaagg agcgcgagga gctcttcctc cccggtcgct cggatccgat cgtcctgccc
     4561 gccacctcgc cggcgctcta cctggtccag cgccttcgcg acgaggcgca ccggttcgcg
     4621 atcacctacc accgcggtct gcgcgccaag cgggccgtcc gatccgcgtt cgacgacctg
     4681 cccggtgtcg gccccaagcg gaagcgggag ctgctcaagg tgttcggctc gatcaagcgg
     4741 gtgcgcgacg cgccggtcga gcagatcgcg gccgttccgg ggatcggacc ggccctggcg
     4801 acgcggatca aggccaccct ggaagcgtga gccgcgtgct cccaccgggc cgtccccccg
     4861 gccggggagc gttccgtgta acatcccgcc tcgatgcgta gagccggccc gttcatcatc
     4921 ctgatcatcg gcgtgctcgc cctgttcgtg gacttcctcc ccggactggc cgtgcccgac
     4981 cccaacagcg tcgacggcag ctggcggaag ctcgagacca agctcggcct cgacctgaag
     5041 ggcggtctcc gggtcgaata ccaggcccag ccggtcgagg gccggtcgcc gagctccggc
     5101 gacatgtcga tcatcaagga catcgtcgag cgtcgcgtga acgggagcgg cgtgtccgag
     5161 ccggtcgtga ccacgcaggg ctccgaccgc gtcgtcgtcg agatgccggg cgtgaccgat
     5221 cccgaggcca tccggagcct gatcggccag accggccggc tcgacttcgt gccgctcggc
     5281 aagacctctg cccaggccgg ccagaccctg gacctcaagg cgaacccgcc gttgttcagt
     5341 ggcgaccagg tgcagtcggc cacgatcggt caggacccga gcggcgggtt ggcggtcgac
     5401 ttcgtgctca agggcgatgg cgcgtccctc ttcgcgacgt acaccgcggc gcacgtcggc
     5461 gactacttcg cgatcaccct cgactcgtcg gtgatctcgg cccccgtgat ccagaactcg
     5521 atccccggcg ggaacgtcca gatcagcgcc ggcgggctcg gcggcttctc cgccaaggag
     5581 gccaacaacc tggtcaccgt gctcaagtac ggctcgctgc cgttcccgat caaggagctc
     5641 tcgagcgacc agatcagcgc cacgcttggt agccagttcc tcgatcagag cctgctggcg
     5701 ggggcgatcg ggatcctgct cgtaatcacg ttcatgatca cctactaccg gctgaccggc
     5761 ctcgtcgcga gctttgcgct cgtttactac acgctggtca tgtacgcgat cttccggctg
     5821 gtcccggtca ccctgaccct ggccggtgtc gcgggcttcg tgctgtcggt gggcatggcg
     5881 gtggacgcca acatcctgat cttcgagcga atgaaggagg agctgcggct cggcaagtcg
     5941 ctggcgtccg ccgtcgaagc cgggttcaac cgggcgtgga actcgatcct cgactcgaac
     6001 gtgtcgagcc tgatcacggc ctcgatcctg tacttcttcg gctcgtcggt catccagggc
     6061 ttcgcgctgg tcctgatcct cggcgtcctc gtgtcgatgt tctcggccat cacggtgacg
     6121 cgctcgatcc tccggatcgt cgtggcccag gactgggccc ggaaggcctg gctgtacggc
     6181 gtgagcgacg ccgagttcac cgctcggccg accggacggc ggcgcgcgct acggggtgag
     6241 gccggcggtg tttgacctca tcagcaagaa gaactggttc ttcgccttct cgctgctcat
     6301 cacgatcccg ggcctga
//
LOCUS       DATDDI010000728         2411 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_473197, whole genome shotgun sequence.
ACCESSION   DATDDI010000728 DATDDI010000000
VERSION     DATDDI010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473197"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIU37_10560"
     CDS             <1..240
                     /locus_tag="VIU37_10560"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014443.1"
                     /translation="QAAELAGEPILARLTRAPSNDAPIGGLKVVTQNGWFAARPSGTE
                     DVYKIYGESFCGRDHLRRIQEEARAIVAAALAGEA"
     gene            complement(333..1352)
                     /locus_tag="VIU37_10565"
     CDS             complement(333..1352)
                     /locus_tag="VIU37_10565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014444.1"
                     /translation="MNTSRAAIPLVILVAILAVSPAPAIAENRTVSWNPSTTYTDGTP
                     FAPGTTVRYDVYWSVDPGLSPASLQPIASLVAGTSTPFDPDALGMPRGTSVYITADAV
                     LNTGETSTLAVAYAWNVPALSSLSIAGPSSVNENGSGTYAATATWSDNTTTAVTPVWS
                     ENSAYATISAGGVLTASAVTSSQPVTVSASYTSGGVTRTASQAVTIVDVPATQPSPPQ
                     NIQVSGPVSTFPSRIFRLSWDPVTTYGDGTPIAGAAVSYTAYWTTDPALSSATLQQLA
                     QPTTATSVDFDPAADGIATNTRVYLAARAAVSPGQQSPLSGAVSWMASNSGPDAPANG
                     RIYTK"
     gene            complement(1365..1823)
                     /locus_tag="VIU37_10570"
     CDS             complement(1365..1823)
                     /locus_tag="VIU37_10570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014445.1"
                     /translation="MRHLGARELLVVLAVAGALAAGCGGGGESPSATAGPVSALGWDP
                     PKSYSDNAALDPYKDLDYYEIYVREDGNFVDNDVPMAQIKAVVADPATGATARLETEF
                     ILENLRPFIGPGKLYYVSLKAVGMDGQRSAFMPPVSWDERPANTRPVTPI"
     gene            2122..>2411
                     /locus_tag="VIU37_10575"
     CDS             2122..>2411
                     /locus_tag="VIU37_10575"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6014446.1"
                     /translation="MGRIPRGLAGVPLIVAVLFVAGTARSDAGKVYIGLNAETGHITS
                     TSDDAVRQGIQIAIEEINRSGGVLGGRKLELLVRDNRAVPARAIAHYKELAET"
BASE COUNT          397 a          827 c          825 g          362 t
ORIGIN      
        1 caggccgccg agctggccgg cgagccgatc ctcgcccgcc tgacgcgcgc ccccagcaac
       61 gatgccccga ttggcggctt gaaggtggtg acacagaacg gctggttcgc cgcccgcccg
      121 tcggggaccg aagacgtgta caagatctac ggggagagct tttgcggccg ggaccacctc
      181 cgccggatcc aggaggaggc ccgcgccatc gtcgccgcgg cgctcgccgg ggaggcgtga
      241 cccggcgcaa cggacggttg gccgcgggcg acgggcccgc aaacgacgac gggccgtgag
      301 gcccctgccg gccggacggg aagggccgcc tcttacttcg tgtagatcct tccgttggcc
      361 ggcgcgtcgg ggccgctgtt ggacgccatc cacgagaccg ccccggacag cggagactgc
      421 tgtccggggc tgaccgccgc cctcgcggcg aggtagactc gcgtgttcgt cgcgatcccg
      481 tcggcggcgg gatcgaagtc gacggaggtt gcggtcgtcg gctgcgccag ctgctgcagc
      541 gtcgcggacg acagggcggg atccgtcgtc cagtacgccg tgtagctgac ggcggcgccc
      601 gcgatgggcg tcccgtcccc gtaggtcgtg acgggatccc acgacaggcg gaaaatcctc
      661 gacgggaacg tcgacaccgg cccgctcacc tggatgttct gcggcggcga gggctgtgtc
      721 gccgggacgt ccacgatcgt cacggcctgc gacgccgtcc gcgtcacccc gcccgacgtg
      781 tagctcgccg acaccgtcac cggctggctc gacgtcaccg ccgacgccgt cagcacgccg
      841 cccgcgctga tcgtcgcgta cgccgagttc tcgctccaca ccggcgtcac cgccgtcgtc
      901 gtgttgtcgc tccacgtcgc cgtcgccgcg tacgtcccgc tcccgttctc gttcaccgac
      961 gacggccccg cgatcgacag cgacgacagg gcgggcacgt tccaggcgta cgccaccgcg
     1021 agggtcgacg tctcgccggt gttcaacacc gcgtcagccg tgatgtagac ggacgttccg
     1081 cgcggcatcc ccaaagcgtc gggatcgaag ggcgtcgacg tccccgccac caaggaggcg
     1141 atcggctgca gcgacgcggg gctcagcccc ggatcgacgc tccaatagac gtcatacctc
     1201 acggtcgtcc ccggggcgaa cggcgtcccg tccgtgtagg tcgtggaagg attccacgac
     1261 acggtccggt tctccgcgat cgcgggcgcg ggggacacgg cgaggatcgc gacgaggatg
     1321 acgagcggaa tcgcagcgcg cgaggtgttc aatcccgcac cgccctaaat gggagtcacg
     1381 ggccgcgtat tcgcgggccg ctcgtcccag gaaaccgggg gcatgaacgc cgacctctgt
     1441 ccgtccatcc cgacggcttt gagcgaaacg taatagagct tccccgggcc gataaacggg
     1501 cggaggttct ccaggatgaa ctccgtctcg agtctcgcgg tcgcgccggt tgcgggatcg
     1561 gcgacgaccg ccttgatctg cgccatcggc acgtcgttgt cgacgaagtt cccgtcctcg
     1621 cggacgtaga tctcgtagta gtcgaggtcc ttgtacggat cgagggccgc gttgtccgaa
     1681 tacgacttcg ggggatccca gccgagcgcg gaaacgggcc ccgccgtcgc ggagggagat
     1741 tcccctcctc cgccgcaacc cgcggcgagc gcgccggcga ccgccagcac gaccagcagt
     1801 tcccgagctc cgagatgcct catcgcgtcc ctccgagtcc gccttcgatg cacgccactg
     1861 gcgtcgacag gcggttacaa aatgcgtgcc gtcaggccgc cattccaaac agatcgaaat
     1921 acatggcgat attcggtaag aaagcgtgcc ggcgagaacc gggcaatatt caggaatcga
     1981 cgtcgaaacg ggccggaatt tcagatctgg catggcgatg cgcgcggggg gaggaaccgc
     2041 tattgattct cttcgatata taggtatatc ttcgcttgag cggttcccgg gccggaggga
     2101 ccgacacgga gggatatgcc gatggggcgc attccgcgag gacttgccgg ggtcccgcta
     2161 atcgtcgccg tgctgttcgt cgcggggacc gcccggtccg acgccggaaa ggtctacatc
     2221 ggcctcaacg cggagaccgg gcacatcacg agcacgtccg acgacgccgt ccgccaggga
     2281 atccagatcg cgatcgagga gatcaaccgc tccggcggag tcctgggcgg gaggaagctc
     2341 gaactgctcg tccgcgacaa ccgggccgtc ccggcgcggg ccatcgccca ctacaaggag
     2401 ctggcggaga c
//
LOCUS       DATDDI010000729         1886 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_639863, whole genome shotgun sequence.
ACCESSION   DATDDI010000729 DATDDI010000000
VERSION     DATDDI010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639863"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..799
                     /locus_tag="VIU37_10580"
     CDS             <1..799
                     /locus_tag="VIU37_10580"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014447.1"
                     /translation="AAPLGWLLLAYIGSLSLFLITSFWRVDSFSGNLITEPTLGNYQQ
                     IATEPIYRTIAIRTVGMAALVTATDILLALPIAFYMAKLASTRTRGVLVVSILLPLWS
                     GYLVKVYAWRLILSEGGVLNAVLEPFGLKGPGYSDAAVWLVESYLWLPYMIIPVFAGF
                     ERIPGSLLEASADLGGRAGMTLRRIVLPLALPAIAAGSIFTFSLTLGDYITPTLVSNT
                     RFIGNVVYDFVGIAGNQPLAAAYAMVPVTIMVIFLLVARRLGAFEAL"
     gene            799..1608
                     /locus_tag="VIU37_10585"
     CDS             799..1608
                     /locus_tag="VIU37_10585"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014448.1"
                     /translation="MLLPRGVRIALRVASILLLAFIYVPIGIIVLYSFNAARVATWPI
                     TSFTLDWYGRAVNDAGIRSALVASLEAAVGATVLSLVLGSLIALAVQRYRFFGREALS
                     FVVVLPLALPGIVTGIALNTAFRAIGLEFGLLTIVVGHATFCVVVIYNNVIARLRRTS
                     RSIEEASADLGADTFTTFRRVTLPAVRTALIAGALLAFALSFDEIIVTNFTSGAGIQT
                     LPLWIFSNYQRPNQLPLVNVAAVLVLLLSIVPVYLASRLTADPAAVAGART"
BASE COUNT          242 a          692 c          596 g          356 t
ORIGIN      
        1 ggcggctccg ctgggctggc tgctgctcgc ctacatcggg tcgctgtcgc tgttcctgat
       61 cacctcgttc tggcgggtgg acagcttcag cggcaacctg atcaccgagc cgacgctcgg
      121 caactaccag cagatcgcca ccgagccgat ctaccggacg atcgccatcc ggacggtcgg
      181 gatggcggcg ctcgtcacgg caaccgacat cctgctcgcc ctcccgatcg ccttctacat
      241 ggccaagctg gcgtcgaccc ggacgcgcgg cgtcctcgtc gtgtcgatcc tgctcccgct
      301 ctggtcgggc tacctggtca aggtctatgc ctggcgcctg atcctgagcg agggcggtgt
      361 gctcaacgcc gtcctcgagc cgttcgggct caagggcccc ggctacagcg acgcggcggt
      421 ctggctcgtc gagagctacc tgtggctgcc gtacatgatc atcccggtct tcgcagggtt
      481 cgagcgaatt cccggctcgt tactggaggc gtccgccgac ctgggcggtc gggccgggat
      541 gacgctgcga cggatcgtcc tgccgctcgc gctgccggcc atcgccgccg gttcgatctt
      601 caccttcagc ctgaccctcg gcgactacat cacccccacc ctcgtgtcga acacccggtt
      661 catcggcaac gtcgtgtatg acttcgtggg catcgcgggc aaccagccgc tggccgcggc
      721 gtacgccatg gtcccggtca cgatcatggt catcttcctg ctcgtggccc ggcgcctcgg
      781 tgcctttgag gcgctgtgat gctgctccct cgcggcgtcc gcatcgcgct ccgcgtggcg
      841 tcgatcctgc tgctcgcgtt catctacgtg ccgatcggga tcatcgtcct gtactcattc
      901 aacgcggcgc gggtggcgac ctggccgatc acctcgttca cgctcgactg gtacgggcgc
      961 gcggtcaacg atgccggcat ccgctcggcc ctggtcgcct cactcgaggc cgccgtcggg
     1021 gccaccgtcc tgtcgctcgt cctcgggtcg ctcatcgccc tggcggtcca gcgctacagg
     1081 ttcttcgggc gcgaggcgct gtcgttcgtg gtcgtgctcc cgctcgcgct gccgggcatc
     1141 gtgaccggca tcgccctgaa cacggcgttc cgggcgatcg ggcttgagtt cggcctgctg
     1201 acgatcgtcg tcggccacgc cacgttctgc gtggtcgtca tctacaacaa cgtcattgcc
     1261 cggctccggc gcacctcgcg ctcgatcgag gaggcctcgg ccgacctcgg cgccgacacg
     1321 ttcaccacgt tccggcgggt caccctgccg gcggtccgga ccgcactgat cgcgggtgcg
     1381 ctcctcgcct tcgcgctgtc cttcgacgag atcatcgtca cgaacttcac gtctggcgca
     1441 ggcatccaga ccctgccgtt gtggatcttc agcaactacc agcgcccgaa ccagctgccg
     1501 ctggtcaacg tggcggccgt cctcgtgctg ctgctgtcga tcgtgccggt gtacctggct
     1561 tcacgactga ccgccgatcc cgccgccgtg gccggcgcca ggacctgagc cgtcagatcc
     1621 acttgtggcc gtcgaccagg gcggcaccga gcgcggccag cgtcacgagc acgcggacga
     1681 tggcgaacgt cgaaccggtt cgaacaggca tccggagtgg catctggcac ctccccggcc
     1741 gcgacggccg gtgaaccgtg gcggcgaacc cctccgagga gtgcccggtc cgtcagcgcc
     1801 gcccgcagtg tcgcgatcgc cgcttagctg cggcttaggt ttgaccgacc gttggtgcct
     1861 gtgcagcgaa ccccccacat accagc
//
LOCUS       DATDDI010000730         1835 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_36339, whole genome shotgun sequence.
ACCESSION   DATDDI010000730 DATDDI010000000
VERSION     DATDDI010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36339"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1410
                     /locus_tag="VIU37_10590"
     CDS             <1..1410
                     /locus_tag="VIU37_10590"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY6014449.1"
                     /translation="NARVYLVEPPDRVVPIAFEGTVGAYERVDMALLHTRIGEGFTGW
                     VAEHGEALLVNDANSDARGRTIPGTDEVDESMLVVPMRYDAVTIGVITLSKLGLNGFG
                     QEDLRLLTILADQAATAVESARLLGRTQDLAQELRRLLDMSADLSTSLDPHQVAVLIA
                     GHMARAMGVDECAISYWDRAAGRVESLGYFPPIPADQMEPYFDVSRYPTTLRVLERQE
                     MVLIDSEDPSADQAEVALLRAEGHRALAMLPLVAKGQSIALAELFSKAPIPWNAELLE
                     LVQSMANEAAMALENARLYEDARKLADRDPLTGFFNHRFFHERLGEEVVRTQRARHPL
                     SVLMLDLDDFKLVNDTFGHLFGDRVLTWTAELIRSTLRGSDIPARYGGDEFAIILPET
                     DAENARSAAERILEAFRDHAFVGEQRGPVPIGLSIGVATFPTDGRYATDLIAAADQAL
                     YRVKREGGHDAAGAEGTAA"
     gene            1621..>1835
                     /locus_tag="VIU37_10595"
     CDS             1621..>1835
                     /locus_tag="VIU37_10595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014450.1"
                     /translation="MATSRPGPLDWAIVGLLIVAGTAAILHREAVAALEAARRAETES
                     FTRILSGLSRSISPDAILSAIVDELARA"
BASE COUNT          277 a          678 c          613 g          267 t
ORIGIN      
        1 aacgcccggg tctacctggt cgaaccaccc gaccgggtgg tcccgatcgc cttcgagggc
       61 acggtcggcg cctacgaacg ggtggacatg gcgctgctgc atacccgcat cggcgaaggc
      121 ttcacgggct gggtcgccga gcatggcgaa gcgctgctgg tcaacgacgc caacagcgac
      181 gctcgtggcc gcacgatccc gggcaccgac gaggtcgacg agtccatgct cgtcgtcccg
      241 atgcgctacg acgccgtgac gatcggcgtg atcacgctgt ccaagctcgg tctcaacggg
      301 ttcggccagg aagacctgcg gctcctcacg atcctcgccg accaggccgc gaccgcggtc
      361 gaatccgcgc gactgctcgg ccggacccag gatctcgccc aggagctgcg ccggctgctg
      421 gacatgagcg ccgacctgtc gaccagcctg gatccacacc aggtggccgt cctgatcgcc
      481 ggccacatgg cgcgggcgat gggcgtcgac gaatgcgcga tcagctactg ggaccgggca
      541 gccggacggg tggagtcgct cgggtacttc ccgccaatcc cggccgacca gatggagccc
      601 tacttcgacg tctcgcgcta ccccacgacg ttgcgcgtcc tcgaacgcca ggagatggtc
      661 ctgatcgact cggaggaccc gtcggcggac caggcggagg tcgcgttgct ccgggccgag
      721 ggccatcgtg ccctggcgat gctgccactg gtcgccaagg gccagtcgat cgccctggcc
      781 gagctcttct cgaaggcgcc gatcccctgg aatgccgagc tcctcgagct ggtccagagc
      841 atggcgaacg aggccgccat ggcgctggag aacgcccgcc tgtacgagga tgcccggaag
      901 ctcgccgacc gggaccccct gaccgggttc ttcaaccacc gcttctttca cgagcggctg
      961 ggcgaggagg tcgtccggac gcagcgggcg cggcacccgc tgagcgtcct gatgctcgac
     1021 ctggacgact tcaagctggt caacgacacc ttcggccacc tgttcggcga ccgggtgctg
     1081 acctggacgg ccgagctcat ccggtccacg ctccgcggct ccgacatccc ggcgcggtac
     1141 ggcggcgacg agttcgcgat catcctgccc gagaccgacg ccgagaacgc ccggagcgcc
     1201 gcggagcgga tcctcgaggc gtttcgcgac cacgcgttcg tcggggagca gcgtggcccc
     1261 gtcccgatcg ggctgtcgat cggggtcgcg accttcccaa ccgacggccg gtacgcgacc
     1321 gacctcatcg ccgccgccga ccaggcgctc tatcgcgtca agcgcgaggg tggccacgat
     1381 gcggcagggg ccgagggaac cgccgcctaa gcgtaccggc cgctcccctc ccgatcagaa
     1441 caggggtacg aaagtaccag tggacgtccg gacctcggac cgccatcctg ataccccgaa
     1501 gtgatcgatc cccccagccc tccggccgca ccgccggagg cgcccgaccg ccgcatccga
     1561 cggtcctggg gactcttcgc cggctcgttc ctcctccttg gcgccatcct cgccatccgc
     1621 atggccacgt cgcgcccggg tccgctcgac tgggccatcg tcgggctgct catcgtggcg
     1681 ggcacggccg cgatcctcca tcgcgaggcg gtcgccgccc tcgaggcggc gcggcgcgcc
     1741 gagacggagt cgttcacccg gatcctgtcc ggcctgtcga ggtcgatctc gcccgacgcg
     1801 atcctgagcg cgatcgtgga cgagctggcc cgcgc
//
LOCUS       DATDDI010000731         3106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_161212, whole genome shotgun sequence.
ACCESSION   DATDDI010000731 DATDDI010000000
VERSION     DATDDI010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161212"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..755)
                     /locus_tag="VIU37_10600"
     CDS             complement(<1..755)
                     /locus_tag="VIU37_10600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014451.1"
                     /translation="MTGRASFASAEPAYSLPAIDRLAPAPSPALVAARIELHTGPGDV
                     VADLFGRGGWVARAAVDLQRRGISLESSPLTRMLAEVVLRPPDVRHLDAAFQGMAASP
                     RGDSSLKVSIGDLFATHCATCARALVLDDVVWSLEDADGNPTDRPRPVARHYRCTVCR
                     DQRGGSEQRQGPLDDEDLARAAADVGADAMRAMLRGRFPDIAGASSLPDELLALHTPR
                     QLVGLGAILERIEGDLRAAPVLAALRLTLLHAIL"
     gene            complement(819..1676)
                     /locus_tag="VIU37_10605"
     CDS             complement(819..1676)
                     /locus_tag="VIU37_10605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6014452.1"
                     /translation="MTFPDIESSAQSPVNLTRQKRQLADQAIAQASAAKWAEAAAINR
                     KLLELGPDAESENRLAKALWELGELRAAREHYQTALALDPTNRIAERNIDRLKVLLVA
                     AGEQTVPAQEGSKAPVSIFVEETGKTGFAFLTDLADPRQLAQVNPGDSVELTPEGNRL
                     IAHSNGVRIGVVEPRVAARLLKLMADGNKYAAGVTSLGDKDVRIILREIFQDPTNYGK
                     VSFPTAAKSTDLRPYTKGTLVREEMDLEEDLEDDEEDDEIEDLDRVLPPESTSDEAFE
                     DEPDELDEP"
     gene            complement(1939..2775)
                     /locus_tag="VIU37_10610"
     CDS             complement(1939..2775)
                     /locus_tag="VIU37_10610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014453.1"
                     /translation="MAARIHGTSDEGAGQRDLALVAVTVVGLSRLVEPPLVWLVAALL
                     LGAVVLGALQVLADELGPAEAESGVAIEALILPAVAAVACVGAIRLIPFGLWLVPGLA
                     LTWLLVRRALALEARIHRATSGLTADDQTAVLVTILLVSFIGFSGVAAMVPGALIGPP
                     DAHGTLPETNLLVLAIGDGIIAGLLGYRAVALRVPRLSDALWSAGTYAAAIAIGAAAL
                     RAMEIPRLVGPALLTLAVYLWDALTGTTPARRRELRWLWQIGLLAALGLVVTVWNLML
                     RS"
     gene            complement(2775..>3106)
                     /locus_tag="VIU37_10615"
     CDS             complement(2775..>3106)
                     /locus_tag="VIU37_10615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014454.1"
                     /translation="HPSGRKIDERADLDLDWDLVYGEAARTGTALEMNGSPPRLDLAV
                     ERARRAVGMGCLIAIDSDAHDINELDYLRWGVSQARRAWIGPESVVNTRSRDELLAWA
                     VGKPGRV"
BASE COUNT          444 a         1118 c         1126 g          418 t
ORIGIN      
        1 aggatcgcgt gcaggagcgt caggcgcagg gcggccagca ctggcgccgc ccggaggtcg
       61 ccctcgatcc gttcgaggat cgcgccgagc ccgaccagct gccgcggggt gtgcagggcc
      121 aggagctcgt cgggcagcga ggacgctccg gcgatgtccg ggaaccggcc gcgcagcatc
      181 gctcgcatcg cgtccgcccc gacgtccgcc gccgcccgcg ccaggtcctc gtcgtcgagc
      241 ggaccctgcc gttgctccga gccgccgcgc tggtctcggc agaccgtgca ccggtagtgc
      301 cgggcgacgg gccgcggccg gtcggtcggg tttccatcgg cgtcctcgag cgaccagacg
      361 acgtcgtcga gcacgagggc ccgagcgcac gttgcacaat gcgtcgcgaa caggtccccg
      421 atcgagacct tgaggctcga atcgccgcgc ggggaggccg ccatcccctg gaatgcggca
      481 tcgagatggc ggacgtccgg gggccgcagg accacctccg cgagcatccg ggtgagcggg
      541 ctcgactcga gcgagatccc ccggcgctgc agatcgaccg ccgcgcgggc gacccagccg
      601 ccgcgcccga acaggtccgc gacgacgtcg cccggaccgg tatgcagctc gatccgcgcc
      661 gcgacgagcg cgggcgacgg ggcgggcgcc agccgatcga tcgccggcag cgaataggcg
      721 ggttcggcgc tggcaaacga ggctcggccg gtcatcctgc caatgctagc cgagcggcca
      781 aggcggtccg gcggggttgc gggcccgccg gcacgcgact acggctcgtc gagctcgtcc
      841 ggctcgtcct cgaaggcctc gtcgctggtg gattccggcg ggagcacccg gtcgagatcc
      901 tcgatctcgt cgtcctcctc gtcgtcctcg aggtcctcct cgaggtccat ctcctcgcgc
      961 acgagggtgc ccttggtgta cggccgcagg tcggtcgact tggcggccgt cgggaagctc
     1021 accttgccgt agttggtcgg gtcctggaag atctcacgga ggatgatccg gacgtccttg
     1081 tcgccgagcg aggtgacccc ggccgcatac ttgttgccgt cggccatgag cttgaggaga
     1141 cgtgcggcga cgcgcggctc cacgacgccg atccgaaccc cgttgctgtg cgcgatcagc
     1201 cggttgccct cgggcgtgag ctcgaccgag tcgcccgggt tgacctgggc gagctggcgc
     1261 gggtcggcga gatcggtcag gaacgcgaac ccggtcttgc cggtctcctc gacgaagatg
     1321 ctgaccggcg ccttgctgcc ctcctgggcc ggcacggtct gctccccggc ggcgaccagc
     1381 aggaccttga gccggtcgat gttccgctcg gcgatccggt tggtcgggtc gagggcgagg
     1441 gcggtctgat agtgctcgcg cgcggcgcgc agctcgccca gctcccagag cgccttcgcc
     1501 aggcgattct ccgattcggc gtccggcccg agctcgagca gcttccggtt gatcgcggca
     1561 gcctcggccc atttcgcggc cgacgcctgc gcgatcgcct ggtccgccag ctgccgcttc
     1621 tggcgggtca ggttgacggg actctgggcg gagctctcga tatcggggaa ggtcacgagg
     1681 cggtcgtcct ttcggggcgt ggcgaggttc ggagcgggtc tggagcaggg cgcgcggcga
     1741 cgcgggccaa tgcgcgagta tcgcttttag cacggtcggg ccgacgcgtc aaacacggcg
     1801 tgccgctggc gtccgcgatt gggatcgccc gaggcgatgc acgtccgatg catcgcctgg
     1861 ggcggtggcg tgggcgccct ccccgcctga tgcatccgac aggcatcagc gggcgacccc
     1921 tgccccaacg gagaccgttc aggatcggag catcaggttc cagacggtca cgaccaggcc
     1981 cagcgcggcc agcagcccga tctgccacag ccagcgcagc tcgcgccgac gggccggcgt
     2041 ggtccccgtc agcgcatccc acaggtagac cgccaaggtg agcagcgcag gcccgacaag
     2101 ccgcgggatc tccatcgccc gcagtgcggc ggcaccgatc gcgatcgcgg ccgcgtacgt
     2161 gccggccgac cagagcgcgt ccgacagccg cgggacgcgc agcgccacgg cacgatagcc
     2221 gagcagcccg gcgatgatcc cgtcgccgat cgcgaggacc aggaggttcg tctcgggcaa
     2281 cgtgccgtgc gcgtcgggtg gaccgatgag ggcccccggc accatcgccg ccacgccgct
     2341 gaagccgatg aagctgacca gcaggatcgt gaccagcacg gccgtctggt cgtcggcggt
     2401 cagcccgctc gtggcgcggt ggatccgagc ctcgagcgcc agcgcacgcc gaaccaggag
     2461 ccaggtcagc gcgagcccgg gaaccagcca cagcccgaac gggatgagac ggatcgctcc
     2521 aacgcaggcg acggcggcca cggccggcag gatcagcgcc tcgatcgcca cgccggactc
     2581 cgcctcggcc ggaccgagct cgtccgcgag cacctggagc gcacccagca cgaccgcgcc
     2641 gagcaggagc gcggcgacca gccagaccag cggcggttcg accagccggg agagtcccac
     2701 gaccgtgacc gcgactagcg ccaggtcgcg ctggcccgcg ccctcgtccg aggtgccgtg
     2761 gatccgggcg gccatcagac ccggcccggc tttcccaccg cccaggcgag cagctcgtcg
     2821 cgcgaccgcg tattgacgac cgactcgggg ccgatccacg cacgccgcgc ctggctgacc
     2881 ccccagcgca ggtagtcgag ctcgttgatg tcgtgggcgt cggaatcgat cgcaatcagg
     2941 cagcccatgc cgacggcgcg ccgggcgcgt tccacggcga gatccaggcg aggcggcgac
     3001 ccgttcatct cgagcgcggt gccggtccgc gccgcctcgc cgtagacgag gtcccaatcg
     3061 aggtccaggt cggcccgctc gtcgatcttg cgaccggacg ggtggg
//
LOCUS       DATDDI010000732         2004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_78415, whole genome shotgun sequence.
ACCESSION   DATDDI010000732 DATDDI010000000
VERSION     DATDDI010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78415"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VIU37_10620"
     CDS             <1..190
                     /locus_tag="VIU37_10620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014455.1"
                     /translation="QFGTGESWTSTDSVHWDRSPDQPPMGQAEPSAVVPFEGRYVMVG
                     TFGAPDNYIPHVWISPPG"
     gene            complement(207..1040)
                     /locus_tag="VIU37_10625"
     CDS             complement(207..1040)
                     /locus_tag="VIU37_10625"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY6014456.1"
                     /translation="MEIPLFPLHAVLCPGIVLPLHVFEDRYRALTRHCLATGTPFGIV
                     LIRDGREAGSDTTPALAGVGALVEIREAGRYADGRYDLLAAATGRFAIDAVDAGRAPY
                     LVADVTPLEDDVGDEARAERLAATAVRRFVRYLELMRIRDGETGEALDIRVEIDAPGP
                     DEPDPTVRDLGFVGISDPGGSGPERPGVEAGATSDDAPGPDDGPVLAIPDDPTVLSYL
                     LSGIVQIELPRRQRLLEAATTVERLEQLLVLLDREVFLLTHRLRCFTPDRHAAAGARR
                     S"
     gene            complement(1104..1904)
                     /locus_tag="VIU37_10630"
     CDS             complement(1104..1904)
                     /locus_tag="VIU37_10630"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY6014457.1"
                     /translation="MLGLAAAMITGPVLVVVGPTAEQGLAVVAAGTALLSLLVLARLV
                     GLVGLLANDVAKRRALEAQLSFQAFHDPLTGLTNRRRFMEATQAALAGRRRPGAIAAL
                     FIDLDDFKTVNDTLGHAAGDEVLVAVADRLRGSLRAGDVGARLGGDEFGALLSDIPDR
                     AYAIAAADRLLGTLGQPVESGGRTIDVGVSIGIAFDRSSMVSVDELLSEADVAMYQAK
                     ARGKGRHHVYVPSDETQTAIDQLLPGVAATVRRPTAPGRAKPAGAEAG"
BASE COUNT          272 a          731 c          742 g          259 t
ORIGIN      
        1 gcagttcggc accggcgaaa gctggacgtc gacggattcc gtccactggg accgctcgcc
       61 ggaccagccg cccatgggcc aggccgagcc gagcgcggtc gtgccgttcg aagggcgcta
      121 cgtcatggtc ggcacgttcg gcgcgcccga caactacatc ccgcacgtct ggatctcgcc
      181 gcccggctag cgcgcgcgtc cggcggtcaa ctgcggcggg cgccggcggc ggcgtgccga
      241 tcgggcgtga agcagcgcag ccggtgcgtc agcaggaaga cctcgcgatc gagcaggacg
      301 aggagctgct cgagccgctc gacggtcgtg gcggcctcga gcaggcgctg gcggcgcggc
      361 aattcgatct ggacgatccc cgagagcagg taggacagca ccgtcgggtc atccgggatc
      421 gccagcaccg gtccgtcatc ggggccgggt gcgtcgtcgc tcgtggcgcc ggcctcgacg
      481 ccgggccgtt cgggcccgga gccgcccgga tcgctgatcc cgacgaaccc gaggtccctc
      541 acggtcggat ccggctcgtc ggggccgggc gcgtcgatct cgacccggat gtcgagggct
      601 tcgccggtct ccccatcccg gatccgcatc agctcgaggt agcggacgaa ccggcggacc
      661 gccgtcgcgg ccaggcgctc ggcacgagcc tcgtcgccca cgtcgtcctc gagcggcgtc
      721 acgtcggcca cgaggtatgg ggcacggccg gcgtcgaccg catcgatcgc gaaccggccg
      781 gtcgccgcgg cgagcaggtc gtaccggccg tcggcgtagc gcccggcctc gcggatctcg
      841 accagcgcgc cgaccccggc gagcgccggc gtcgtgtccg aaccggcctc acggccgtca
      901 cggatcagga cgatgccgaa cggcgtcccg gtcgccaggc agtggcgggt cagtgcccgg
      961 tagcggtcct cgaacacgtg gagtggcagc acgatgcccg ggcacaggac ggcatggagc
     1021 gggaagagcg ggatttccac gacccgggct gatcctcgcg ctcggctggc aaccggcgaa
     1081 cctgggtccg ccgtcccagg agtctagccc gcctccgcgc cggccggctt ggctcggccc
     1141 ggtgccgtgg gccggcggac cgtggcggcg acaccgggga ggagctggtc gatggcggtc
     1201 tgcgtctcgt ccgagggcac gtagacgtga tggcgaccct tgccccgggc cttggcctgg
     1261 tacatcgcga cgtcggcctc gctgagcagc tcgtccaccg acaccatcga cgaccgatcg
     1321 aaggcgatcc cgatgctgac gccgacgtcg atcgttcgtc cccccgactc gacgggctgg
     1381 cccagggtcc cgagcagccg gtcggccgcc gcgatcgcat aggcccggtc cgggatgtcc
     1441 gagagcagcg ccccgaactc gtcgcccccc agccgggccc cgacgtcccc cgcccgcagg
     1501 ctgccgcgca agcgatcggc cacggcaacg aggacctcgt ccccggccgc gtgtccgagg
     1561 gtgtcgttga cggtcttgaa gtcgtcgagg tcgatgaaca gcgccgcgat cgcgcccggc
     1621 cggcgccggc cggcgagcgc ggcctgcgtg gcctccatga accggcgccg gttggtgaga
     1681 ccggtgagcg ggtcgtggaa ggcctggaag ctgagctgcg cctcgagggc gcggcgtttg
     1741 gccacgtcgt tcgccagcag gccgacgagg ccgaccagtc gcgccagcac gagcagcgac
     1801 aggagcgcgg ttccggcagc caccaccgcg agcccttgct ccgccgtcgg tccgacgacc
     1861 acgaggaccg gcccggtgat catggccgcg gcgagaccga gcattctcgc gcgacgtcgt
     1921 cgtctccgcc ggcgcgggct cggggaagac gaccgcgctc gtggatcgct acgtggccgc
     1981 gctgaggtcg ggcgcccgcc cgtc
//
LOCUS       DATDDI010000733         1868 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_515134, whole genome shotgun sequence.
ACCESSION   DATDDI010000733 DATDDI010000000
VERSION     DATDDI010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515134"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1831)
                     /locus_tag="VIU37_10635"
     CDS             complement(<1..1831)
                     /locus_tag="VIU37_10635"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY6014458.1"
                     /translation="MFDPAVAPYGAWASPIRIDDVVGDLVGLAEPWLDGDEVYWLEAR
                     PSEGGRRVLVRLGADGSMADLTPPPLNVRTRVHEYGGGSYTVAGGVVVFSNFADNRLY
                     RLEPGGEAPVPITPDGPWRFADLRVDPLRLRVLAVREDHSGPGQAKAAVVAIPLNGTA
                     SPEVLVSGPDFLAAPRLSPDGTRLAWLEWDHPDMPWDGTRLRTAAFAPDGTLEAPVLA
                     AGGLEESIAQPEWSPDGILHFVSDRTGWWNLYRLLDGPALDPLGPMDAEFADPAWVFG
                     RSSYGFLPDGSMAAVGRFDGRDHLFHVRPGDLVGEVESPYTEFEGLCVAPAGVVAVVG
                     SPAEPTVLARFDPATLAVAGVLRRASGIVLDPAVVSIPEPIQFPMPNGRLAHALYYAP
                     RNPDFVAPDGERPPLIVQSHGGPTSNASTSLDLAKQLLTSRGIAIVDVDYGGSTGYGR
                     AYRSALNGAWGVVDVDDCVAAARFLADRGDVDPERLAISGGSAGGYTTLAALAFRDVF
                     AAGISLFGVGDLETMARDTHKFESRYMDRLVGPYPEAADRYRQRSPVHFLDQIRCPVL
                     VMQGLDDKVVARGGARRPLTRAPGRDRRPRARGPGPTSERFRSW"
BASE COUNT          286 a          650 c          709 g          223 t
ORIGIN      
        1 cccatgagcg aaaccgctca gatgtcgggc ccgggccgcg tgctcgtggt cgacgatcac
       61 gcccaggcgc gcgagtcaat ggccgacgtg ctccgccgcg cgccacgacc ttgtcgtcga
      121 ggccctgcat gacgagcacc gggcagcgga tctggtcgag gaaatggacg ggcgagcgct
      181 ggcggtagcg gtcggcggcc tccgggtacg gaccgacgag ccgatccatg tagcgcgatt
      241 cgaacttgtg ggtgtcccgg gccatggtct cgaggtcacc gacgccgaac aggctgatcc
      301 cggcggcgaa gacgtcgcgg aaggcgagcg ccgccagcgt ggtgtacccg ccggcgctgc
      361 cgcccgagat cgcgagccgc tccgggtcca cgtcgccgcg gtccgccagg aagcgggcgg
      421 ccgccacgca gtcgtccacg tcgaccacgc cccaggcgcc gttgagggcg gaacgatagg
      481 cgcgtccgta cccggtgctg ccgccatagt ccacgtccac gatcgcgatg ccgcgactgg
      541 tcaggagctg tttggcgagg tccaacgagg tcgacgcatt cgacgtgggg ccgccgtggg
      601 actggacgat gagcggcggg cgctccccgt ccggagccac gaagtccggg tttcgcggcg
      661 cgtagtagag cgcgtgggcc agccggccgt tgggcatcgg gaactggatg ggttcgggga
      721 tggatacgac ggccgggtcg aggacgatgc cgctcgcccg gcgaaggacg ccggccacgg
      781 ccagggtggc cggatcgaag cgggcgagga ccgtcggctc ggccggcgac ccgacgaccg
      841 cgacgacccc ggcgggagcc acgcacagcc cttcgaattc ggtgtacggc gattccacct
      901 cgccgacgag gtcgcccggc cggacatgga agaggtggtc ccggccgtcg aaccgaccga
      961 ccgcggccat cgacccgtcg ggcaggaagc cgtacgacga ccgcccgaag acccaggccg
     1021 gatcggcgaa ctcggcgtcc atcggcccaa gcgggtcgag cgccggaccg tcgagcagcc
     1081 ggtagaggtt ccaccagccg gtgcggtccg agacgaagtg gaggatgccg tcgggcgacc
     1141 attcgggctg ggcgatcgat tcctcgagcc cgcctgcggc gaggaccggc gcctcgagcg
     1201 tgccatccgg ggcgaaggcc gccgtacgca ggcgcgtccc gtcccacggc atgtccgggt
     1261 gatcccactc cagccaggcg agtcgcgtgc cgtcgggcga cagccgcggg gcggccagga
     1321 agtccggtcc gctgacgagg acctcgggcg acgccgtccc gttgagcggg atcgccacga
     1381 cggcggcctt cgcctggccg gggccggaat ggtcctcgcg gacggcgagc acgcggaggc
     1441 ggagcggatc cacccgcagg tcggcgaagc gccacggccc gtccggcgtg atgggaaccg
     1501 gcgcctcacc gcccggttcg agccggtaca gccggttgtc ggcgaagttc gagaagacga
     1561 cgacgccgcc cgcgaccgtg tacgacccac cgccgtactc gtggacccgg gtccggacgt
     1621 tgagcggcgg gggcgtcagg tcggccatcg acccgtccgc cccgaggcgg acgaggacgc
     1681 gccggccgcc ctcggacggg cgtgcttcga gccagtagac ctcgtcgccg tcgagccagg
     1741 gctcggccag cccgaccagg tcgccgacga cgtcgtcgat ccggatcggg gacgcccacg
     1801 cgccgtatgg cgcgaccgca gggtcgaaca cgcgactagg tcccgtggcg ccaggatgcg
     1861 acgtaggc
//
LOCUS       DATDDI010000734         5179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_265680, whole genome shotgun sequence.
ACCESSION   DATDDI010000734 DATDDI010000000
VERSION     DATDDI010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265680"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /locus_tag="VIU37_10640"
     CDS             complement(<1..1009)
                     /locus_tag="VIU37_10640"
                     /inference="COORDINATES: protein motif:HMM:NF025114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY6014459.1"
                     /translation="MARYWSARTEDAMDEALPRSIGTVVIGAGQSGLIMSWHLQRAGR
                     PHVVLDRRETLGGGWQDRWDGFRLVSPNWTTGLPGFPYDDPDPDGFMPRDSVTARMRR
                     YAEAIGAPVHRATEVTRLSADGLDGRRFRVETTQGPIAADDVIVATGAFHEPRIPAAA
                     GGFSARVTQVHAHHYREPDQLPPGGVLIVGSGQTGVQLAEELHDAGRDVWISVGRCGR
                     APRRYRGHDMFYWLRQLAVRGAELGTPMPTVDQLPDPRLRFAGNPHVSGHKGGHDTNL
                     RQMALDGITLLGHMDGADGERILLAPDLSENLRRADGFFDLRLRPLIDKVIEVAGIDA
                     GP"
     gene            1226..2755
                     /gene="rny"
                     /locus_tag="VIU37_10645"
     CDS             1226..2755
                     /gene="rny"
                     /locus_tag="VIU37_10645"
                     /inference="COORDINATES: protein motif:HMM:TIGR03319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEY6014460.1"
                     /translation="MDTPVVLAVALGAAVGGAVLGALVRSVWASQTIKAATAEARRIE
                     AEARTRQKELILEAKDEKLRLQREAEEEARARRGELSGLERRLLQRDEQLDQRTDMLE
                     QRDRKLLERERELDKTRDELARAHSEQVAALERVSGLSAEDAKAILIEAVREEAEHDA
                     VKLARAIERGAREEAQDKARDIVITAMQRVASDHTAEHTVSVVHLPSDEMKGRIIGRE
                     GRNIRALELATGIDLIIDDTPETVILSGFDPVRREVARLAITKLIADGRIHPGRIEEV
                     VAKARAEVEVVMRQAGEQAAYDAGVPGLPADIIKTLGRLKFRTSFGQNVLQHVVETSH
                     LAAIIAAEIGADVQVAKMGGLLHDVGKALDHEVEGPHAAIGASLAQRHNLPPKVINAI
                     AAHHQEVEYNCLEAPIVQIADAISASRPGARGESMDTYVKRLEDLQAIAESFGGVEKS
                     FAVQAGREVRILVRPDEIDDLTASRLARDIVKKIEEQLTYPGQIKVTVIRETRAVEYA
                     K"
     gene            2857..3636
                     /locus_tag="VIU37_10650"
     CDS             2857..3636
                     /locus_tag="VIU37_10650"
                     /inference="COORDINATES: protein motif:HMM:TIGR00282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HEY6014461.1"
                     /translation="MIGDMIGKPGRQVVEAILGELREERGIDFVTANGENVAGGMGLT
                     PSTADSLLASGVDVITSGNHIWDKREIYPYLETHDRVLRPLNYGEREVPGRGWGVYQA
                     LDGTDVAVVNLQGRTFMQPIENPFTDADRLLDESSEPLPPVRLVDFHCELTSEKNAMG
                     VYLDGRVSVVAGTHTHIVTGDERILPGGTAYQSDLGMTGPIWSVIGFAPRTVLPRFVN
                     ALPTRFEVGDGAVVFNAAQIDIDPATGRALAIERIQRLIEL"
     gene            3638..4576
                     /locus_tag="VIU37_10655"
     CDS             3638..4576
                     /locus_tag="VIU37_10655"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY6014462.1"
                     /translation="MTDAPAAGSGRPRRLRHDPAAIPDPVVPPGPSAVDLHAHSRRSD
                     GVLEPADLVRAAADCGVTTFALADHDTLVGYRELVADGAIPVGLELIPGIEINAIVRE
                     DIGLWEGELHILGLGMDTDDEAFEAALVAQRGRRAERFARTLRRLDELGMPVDAQLET
                     LVSGPDDALGRPIIARALVAAGWASTVEDAFRRLIGKGTPGYVAREGLGPVDAIHAIR
                     AAGGLAALAHFSDAPDRTALLRELMDEGLVGLEVYYRTFDRPTTQAMAAAAAELGLVP
                     TGGTDYHGDTGTYAEAHAQLWVPPEVGTEVRERLDR"
     gene            complement(4580..>5179)
                     /locus_tag="VIU37_10660"
     CDS             complement(4580..>5179)
                     /locus_tag="VIU37_10660"
                     /inference="COORDINATES: protein motif:HMM:NF015686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEY6014463.1"
                     /translation="ILLLLTISWIVGLTEPLFEVAGRAISVRDLILIGGGLFLLWKAT
                     TEIHESLEGDEAHAPDTTAMSTVGSVLVQIVLLDIVFSLDSVLTAVGMVDEVAIMIAA
                     VIIAVGVMLFASGPLAKFVHAHPTVKMLALAFLLLIGVTLIADGLGFHIPKDYIYAAM
                     AFSVFVELLNLRARRRRRVPIELHPTFVKDEPDPTSTGG"
BASE COUNT          821 a         1844 c         1832 g          682 t
ORIGIN      
        1 ccggacccgc gtcgatgccg gcgacctcga tgactttatc gatgagcggg cgcaaccgga
       61 ggtcgaagaa accgtcggcg cgccggaggt tctccgagag gtcgggcgcg agcaggatgc
      121 gctcgccgtc ggcgccgtcc atgtggccga ggagcgtgat cccgtcgagc gccatctggc
      181 gcaggttcgt gtcgtggccg cccttgtgcc ccgagacgtg cgggttgccg gcaaaccgga
      241 gccgcgggtc cgggagctgg tcgacggtcg gcatcggcgt cccgagctcg gcgccgcgca
      301 cggccagctg gcgcagccag tagaacatgt cgtggccgcg ataccgccgc ggcgcccgtc
      361 cgcatcggcc gaccgaaatc cagacgtcgc gcccggcgtc gtggagctcc tcggccagct
      421 gcacgccggt ttggcccgaa cccacgatca ggacgccacc cggtgggagc tggtcgggtt
      481 cccggtagtg atgggcgtgg acctgcgtga ctcgcgccga gaagccgccg gccgcagccg
      541 ggatccgtgg ctcgtggaac gccccggtcg cgacgatgac gtcgtcggcg gcgatcgggc
      601 cctgcgtggt ctccacccgg aaccgccgtc cgtcgaggcc gtcggcggac agccgcgtca
      661 cctcggtcgc gcgatggacg ggcgcgccga tcgcctcggc ataccgacgc atcctggccg
      721 tcacgctgtc gcgtggcatg aagccgtcgg gatccgggtc gtcgtatggg aagcccggca
      781 gcccggtcgt ccagttcggg ctcaccagcc ggaacccgtc ccagcgatcc tgccagccgc
      841 cgcccaacgt ctcgcgtcgg tcgagcacga cgtgcggccg cccggcccgc tgaagatgcc
      901 agctcatgat caggccggac tgacctgccc cgatcaccac ggtcccgatc gaccgcggaa
      961 gcgcctcgtc cattgcgtcc tccgtgcgag ccgaccagta tcgggccacg ggacgatcct
     1021 ggcgagccca tcggttgccg ttcggggccc gtcgccgtag gctacgcggc agacggaatg
     1081 gcaccgccga caacggtgct cattgcgctg cacgggccga tcgccgccct ttcatccgga
     1141 tctcaaatcg ccctcttcgc gatcgcgcct tcgtacacgt cagacgtccg gccgcagaat
     1201 ccggtccgga tgggaggaat acaggatgga tacgccagtt gtcctggcgg tggccctcgg
     1261 ggctgccgtc ggcggagccg tactcggcgc cctggtccgg agcgtctggg cctcccagac
     1321 gatcaaggcg gcgaccgccg aggcccgccg gatcgaggcc gaggcgcgga cccgccagaa
     1381 ggagctgatc ctcgaggcga aggacgagaa gctccggctc cagcgtgaag cggaggaaga
     1441 ggcgcgagcc cggcgcggtg agctgtcggg tctcgaacgc cggctcctcc agcgcgacga
     1501 acagctcgac cagcgcaccg acatgctcga gcagcgcgac cggaagctcc tcgagcgcga
     1561 gcgcgagctc gacaagacgc gcgacgagct cgcccgggcg cactcggagc aggtggccgc
     1621 gctcgagcgc gtgtccggcc tgtccgccga ggacgccaag gcgatcctca tcgaggcggt
     1681 ccgcgaggaa gcggagcacg acgccgtcaa gctcgcccgc gccatcgagc gcggtgcccg
     1741 cgaggaggcc caggacaagg cccgcgacat cgtcatcacc gcgatgcagc gcgtcgcgtc
     1801 cgaccacacg gcggagcaca cggtctcggt cgtccatctc ccgtcggacg agatgaaggg
     1861 ccggatcatc ggtcgcgaag gccgcaacat ccgggcgctg gagctggcca ccgggatcga
     1921 cctgatcatc gacgacaccc ccgagacggt catcctgtcc gggttcgatc cggttcggcg
     1981 cgaggtcgcc aggctcgcca tcaccaagct gatcgccgac ggccggatcc atcccggccg
     2041 gatcgaggag gtcgtggcca aggcgcgcgc cgaggtcgag gtggtcatgc gccaggccgg
     2101 cgagcaggcc gcctacgacg ccggcgtccc gggtctcccg gcggacatca tcaagacgct
     2161 cggccggctc aagttccgga cgagcttcgg ccagaacgtg ctccagcacg tcgtcgagac
     2221 cagccacctg gcggcgatca tcgccgccga gatcggcgcc gatgtccagg tcgccaagat
     2281 gggcgggctg ctccacgacg tcggcaaggc gctcgaccac gaggtggagg gtccgcacgc
     2341 cgcgatcggg gcgagcctcg cccagcggca caacctgccg ccaaaggtca tcaacgcgat
     2401 cgccgcccat caccaggagg tcgagtacaa ctgcctggag gcgccgatcg tccagatcgc
     2461 cgacgcgatc agcgcctcgc ggccgggcgc ccgcggcgaa tcgatggaca cctacgtcaa
     2521 gcggctggag gacctgcagg cgatcgccga gagcttcggc ggcgtcgaga agtcgttcgc
     2581 ggtccaggcc gggcgcgagg tgcgcatcct cgtccgaccc gacgagatcg acgacctgac
     2641 cgcgagccgg ctggcccgcg acatcgtcaa gaaaatcgag gaacagctga cctacccggg
     2701 tcagatcaag gtgaccgtca tccgcgagac gcgggccgtg gagtacgcga agtagccccc
     2761 accggacacg aggcgcacgg cccggtcggc cggacgcgcc tcggcaaccc gaccaacggc
     2821 aacgtcccgc ggccccaggg tgcctgccgc gtcctgatga tcggcgacat gatcggcaag
     2881 cccgggcggc aggtcgtgga ggcgatcctc ggcgagctgc gcgaggagcg cgggatcgac
     2941 ttcgtcaccg ccaacggcga gaacgtggcc ggcggcatgg gcctcacccc gtcgaccgct
     3001 gacagcctcc tggcgtccgg cgtggacgtc atcacgtcgg gcaaccacat ctgggacaag
     3061 cgcgagatct acccgtacct cgagacccac gatcgcgtcc tccggccgct caactacggc
     3121 gagcgcgagg tcccgggccg cggctggggc gtctaccagg ccctcgacgg gaccgacgtc
     3181 gcggtggtca acctccaggg ccggacgttc atgcaaccga tcgagaaccc gttcaccgac
     3241 gccgaccgac tgctcgacga gtcgtcggag ccgctcccgc cggtccgcct ggtcgacttc
     3301 cactgcgagc tgacctccga gaagaacgcg atgggcgtct acctcgacgg ccgggtcagc
     3361 gtggtcgccg gcacgcacac gcacatcgtc acgggcgacg agcggatcct gccgggcggg
     3421 accgcctacc agagcgacct gggcatgacc ggcccgatct ggagcgtgat cgggttcgcg
     3481 ccgcgcaccg tgctcccgcg cttcgtcaac gcgctgccga cccggttcga ggtgggggac
     3541 ggggccgtcg tgttcaacgc ggcccagatc gacatcgatc cggcgaccgg gcgcgcgctc
     3601 gccatcgagc ggatccagcg gctcatcgag ctctgacgtg acggacgcgc cggccgcggg
     3661 ttccgggcgc ccgcgacgac tgcgccacga tccggccgcc atcccggacc cggtcgtccc
     3721 gcccgggcct tcggcggtcg atctgcatgc gcacagccgt cgctcggacg gcgtgctcga
     3781 gcctgccgac ctcgtccgcg cggccgccga ctgcggcgtg acgaccttcg cgctcgccga
     3841 tcacgacacg ctcgtcggct accgcgagct cgtcgcggac ggcgccatcc ctgtcggcct
     3901 cgagctgatc cccgggatcg agatcaacgc catcgtgcgc gaggacatcg ggctgtggga
     3961 gggcgagctc cacatcctcg gcctcggcat ggacaccgac gacgaggcgt tcgaggcggc
     4021 gctcgtggcg cagcgtggtc gccgtgccga gcgcttcgcc cggaccctgc gccgcctcga
     4081 cgagctcggc atgccggtcg acgcgcagct cgagacgctc gtgagcgggc ccgacgacgc
     4141 gctcggccgg ccgatcatcg cccgggcgct cgtggcggcc ggctgggcga gcacggtcga
     4201 ggacgcgttc cggcggctga tcggcaaggg gacgccgggc tacgtcgcgc gtgaagggct
     4261 cgggcccgtc gacgcgatcc acgcgattcg ggccgccggg gggctggcgg ctctcgcgca
     4321 cttctcggac gctccggacc gtacggcgct ccttcgcgag ctcatggacg agggcctcgt
     4381 cgggctcgag gtctactacc gcacgttcga ccgtccgacg acgcaggcga tggccgcggc
     4441 cgccgccgag ctcggcctgg tgccgacggg cggcacggac taccacggcg acaccggaac
     4501 ctatgccgag gcccacgccc agctgtgggt cccacccgag gtggggaccg aggtccgcga
     4561 gcgactggac cgctagccgt cagcccccgg tggacgtcgg atccggctcg tccttgacga
     4621 acgtgggatg gagctcgatc ggtacacggc ggcgtcgccg ggcccggagg ttgaggagct
     4681 cgacgaagac cgagaaggcc atcgccgcgt agatgtagtc cttggggatg tggaacccga
     4741 gcccgtcggc gatcaaggtc acgccgatga ggaggaggaa ggcgagcgcc agcatcttga
     4801 ccgtgggatg cgcgtgcacg aacttcgcca gcggccccga ggcgaagagc atcacgccca
     4861 ccgcgatgat gaccgccgcg atcatgatcg cgacctcgtc gaccatgccg acggccgtca
     4921 ggacggagtc gagcgagaag acgatgtcga gcagcacgat ctggacgagg acgctgccga
     4981 ccgtggacat tgcggtggta tccggcgcgt gggcctcgtc gccctcgagc gattcgtgga
     5041 tctcggtcgt ggccttccag agcaggaaca ggccgccccc gatgaggatc aggtcccgca
     5101 ccgagatcgc ccgcccggcc acctcgaaca gcggttcggt cagcccgacg atccaggaga
     5161 tcgtcagcag gaggaggat
//
LOCUS       DATDDI010000735         1626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_119638, whole genome shotgun sequence.
ACCESSION   DATDDI010000735 DATDDI010000000
VERSION     DATDDI010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119638"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..368)
                     /locus_tag="VIU37_10665"
     CDS             complement(<1..368)
                     /locus_tag="VIU37_10665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY6014464.1"
                     /translation="MTQPANRHAASFDANRSLWDAWTAVHAAGDFYDLEAFRAGGVRL
                     RPYEIELVGDVTGKTLLHLQCHFGIDTLSWARLGAAVTGADLSPAAIDLATRLAVELG
                     FLDARFVLSNLYDLPANLDGR"
     gene            complement(365..838)
                     /locus_tag="VIU37_10670"
     CDS             complement(365..838)
                     /locus_tag="VIU37_10670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014465.1"
                     /translation="MTHLMELVAGHAKEILLALETDDLDGLDDRDRFPAHVALGGGLD
                     PTWLDLFAEATRAVTGGSDPSDFLDARIELDGPDDGHGRTIERVDPAWVDAVARVADT
                     QVGAIAAGWIDLIEEELGTLPREEKPWIRELAGRLVAFCRAADRQPDVLFAWSLR"
     gene            complement(851..>1626)
                     /gene="sucD"
                     /locus_tag="VIU37_10675"
     CDS             complement(851..>1626)
                     /gene="sucD"
                     /locus_tag="VIU37_10675"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF004230.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEY6014466.1"
                     /translation="GVTPGKGGQSALDGRVPVFNTVAEAVRETGANTSCIFVPAAGAP
                     DSVMEAASAGIATIFCITEGIPALDMVPALEVVRRAGARLIGPNCPGATSPGSAKVGI
                     IPGSIHRRGRVGVVSRSGTLTYEAVQAMTDAGVGQSTCIGIGGDPIIGTTFLDVLQLF
                     AADEETAAIVLIGEIGGAAEETAAAWAAEHLRDLPKVAFIAGRTAPEGKRMGHAGAII
                     SGGAGTAASKVEALEAAGFRIAASPLELPSLLRNAGYRD"
BASE COUNT          234 a          595 c          586 g          211 t
ORIGIN      
        1 cggccgtcga ggttggccgg caggtcgtac aggttcgaca ggacgaaccg agcatcgagg
       61 aagcccagct ccacggccag tctcgtcgcc aggtcgatcg ccgccgggga gaggtccgcg
      121 ccggtcacgg ccgcgccgag ccgcgcccac gacagggtgt cgatcccgaa gtggcactgc
      181 aggtgcagga gcgtcttgcc ggtgacgtcg ccgaccagct cgatctcgta cggacggagg
      241 cgcacgccgc ccgccctgaa cgcctcgaga tcgtagaagt ccccggcggc gtggacggcg
      301 gtccaggcgt cccacagcga ccggttggcg tcgaacgacg ccgcgtgccg gttcgccggc
      361 tgggtcaccg cagggaccag gcgaacagga cgtcgggctg acggtccgcg gcccgacaga
      421 acgcgaccag gcgtcccgca agctcgcgga tccacggctt ctcctcgcgt ggcagggtcc
      481 cgagctcctc ctcgatcaag tcgatccagc ccgccgcgat cgcaccgacc tgggtgtcgg
      541 cgacccgcgc gacggcgtcg acccaggcgg gatcgacccg ctcgatcgtc cggccatggc
      601 catcgtcggg accgtccagc tcgatccggg catcgaggaa atcggacggg tcggaaccgc
      661 cggtcacggc acgggtggcc tcggcgaaca ggtccagcca ggtcggatcg agtccgccac
      721 ccaacgcgac gtgggccggg aagcggtcgc ggtcgtcgag cccgtcgaga tcgtcggtct
      781 cgagggccag gaggatctcc ttggcgtgcc cggccaccag ctccatcaga tgggtcacct
      841 ggacggcccg tcagtcgcga tagccggcgt tgcgcagcag cgacggaagc tccagtggcg
      901 acgcggcgat ccggaagccc gcggcctcca gtgcctcgac cttggacgcc gcggtccccg
      961 cgccgcccga gatgatggcg ccggcatggc ccatccgctt gccctcgggc gcggtccggc
     1021 cggcgatgaa ggcgactttc ggcaggtcgc gcaggtgctc ggccgcccac gccgcggcgg
     1081 tctcctcggc cgccccgccg atctcgccga tcagcacgat cgcggccgtc tcctcgtccg
     1141 cggcgaacag ctggaggacg tcgaggaagg tcgtcccgat gatcgggtcg ccgccgatcc
     1201 cgatgcacgt cgactggccg accccggcgt cggtcatcgc ctggaccgcc tcgtaggtca
     1261 aggtgccgga gcggctcacg acgccgaccc ggccgcgacg atggatcgag cccgggatga
     1321 tcccgacctt ggccgacccc ggcgacgtgg cgcccgggca gttgggcccg atcagccgtg
     1381 cccctgcccg gcggacgacc tccagcgcgg ggaccatgtc gagcgcgggg atcccctccg
     1441 tgatgcagaa gatcgtggcg atcccggcgc tcgcggcctc catcacggag tcgggcgcgc
     1501 cggcggccgg gacgaagatg caggacgtgt tggcgccggt ctcgcgcacc gcctcggcca
     1561 cggtgttgaa caccgggacc ctgccgtcca gcgcggactg gccgcccttg ccgggggtga
     1621 cgccgg
//
LOCUS       DATDDI010000736         2641 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_515233, whole genome shotgun sequence.
ACCESSION   DATDDI010000736 DATDDI010000000
VERSION     DATDDI010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515233"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..722)
                     /locus_tag="VIU37_10680"
     CDS             complement(3..722)
                     /locus_tag="VIU37_10680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014467.1"
                     /translation="MNDIDALLHGAGERWRATQADPPAVDPAAFTVRVRPSVRPVVRA
                     VSTGLAAVVVIGLAVSAVGVGRAPGVGGPPPVGPAAAPSMADVSPSAPSEASPAASFT
                     CDVTRPTDPLVPPEGYPAEPPPGYGAEWYGTPALWTNLDRNGETWAHLPMTPDGLTQK
                     TFWWSTDWVPEADPEPNITVVGTRLDAPGSFEASPGTNASAGAGTAMLVGVTVPSPGC
                     WRLTGTYLDASLSIVVEVKGD"
     gene            complement(719..1219)
                     /locus_tag="VIU37_10685"
     CDS             complement(719..1219)
                     /locus_tag="VIU37_10685"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY6014468.1"
                     /translation="MTALSRERPDAPATPEAFADWVRPHVPAMARLAARLAPTGDRDD
                     IVQEALTRAWQKRDQFDARRGAPGAWLLAITADRARQARRRPSDAWLPAEVVGRVRSP
                     DDRLDIEYAISRLPPRQRLAIDCFYFVGLSVADTAVVMGCSEGTVKSTLSDARNRLKP
                     LLEVRE"
     gene            complement(1277..2083)
                     /locus_tag="VIU37_10690"
     CDS             complement(1277..2083)
                     /locus_tag="VIU37_10690"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY6014469.1"
                     /translation="MTPTEAELDAWLAFALACCDEADAQALAHFRRDLVIETKPDRSF
                     VTEADQAIERGIRARIAEAHPDHGLVGEEYGDEAGRGSVTWYIDPIDGTHNFMRGVPL
                     FGTLLAVEAAGELQLGVMSAPALGGRWFARRGGGAWAVSAIGADAGIRRPIHVSRVAG
                     LADAHLLYGSAQEIADSGAAPGFAGLIGDVWRDRGFGDFWGYALLAEGAAEAMVEVGP
                     KSWDLAAPLVIIEEAGGRLTDLDGRRTIHSGTVLATNGLLHDEILGRLRG"
     gene            complement(2080..2346)
                     /locus_tag="VIU37_10695"
     CDS             complement(2080..2346)
                     /locus_tag="VIU37_10695"
                     /inference="COORDINATES: protein motif:HMM:NF020253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HEY6014470.1"
                     /translation="MRLRCLVLDDPRSVCLGNEPVRIDGRVVGRVTSGGYGFAVERSI
                     AYAYLPPERSAIGTRGEVEVFGDWVGFEVAREPLYDPTGERLRS"
BASE COUNT          357 a          979 c          958 g          347 t
ORIGIN      
        1 ggtcagtcgc ccttgacctc gaccacgatg gacagcgacg cgtccaggta ggtcccggtc
       61 aatcgccagc agcccgggct cggcacggtc accccgacca gcatcgccgt cccggcaccg
      121 gcactggcat tcgtccccgg actggcctcg aaggaacccg gggcgtcgag ccgagtgccc
      181 acgacggtga tgttcggttc gggatccgcc tccgggaccc agtcggtgct ccaccagaag
      241 gtcttctggg tcagcccgtc cggcgtcatc gggaggtgcg cccaggtctc gccgttgcga
      301 tccaggttcg tccagagcgc cggtgtcccg taccactcgg ccccgtatcc gggcggcggc
      361 tcggccggat agccctcggg cggcacgagc ggatcggttg gccgcgtgac gtcgcaggtg
      421 aaggaggccg ccgggctcgc ctccgacgga gcggacgggc tgacatcggc catgctcgga
      481 gccgcggccg gtcccacagg tggcggcccg cccacgcccg gggcccggcc gaccccgacg
      541 gcggagacgg ccaggccgat gacgacgacc gcggcgagcc cggtcgacac ggcccgcacg
      601 acgggcctga ccgacggccg aacccggacc gtgaacgcgg ctgggtcgac cgccggcggg
      661 tcggcctgcg tcgcgcgcca gcgctcgccg gcgccatgga gcagcgcatc gatgtcgttc
      721 attcgcggac ctccagcagg ggcttgagtc ggtttcgggc gtcggacagg gtggacttga
      781 cggtgccctc ggagcagccc atcacgaccg cggtgtcggc caccgagagg ccgacgaagt
      841 agaagcagtc gatcgccagg cgttgtcgcg ggggcagccg cgagatcgcg tactcgatgt
      901 cgagccggtc gtcgggcgag cgaacgcgtc cgacgacctc ggccggcagc caggcgtccg
      961 acgggcgacg gcgcgcctgc cgggcgcggt cggcggtgat ggccagcagc caggcgccgg
     1021 gtgcaccgcg ccgcgcgtcg aactggtccc gtttctgcca cgctcgggtg agcgcctcct
     1081 ggacgatgtc gtcccggtcg ccggtcggcg cgagccgggc ggccaggcgg gccatcgccg
     1141 gaacatgcgg ccgcacccag tcggcgaacg cctccggtgt ggccggcgca tccggccgtt
     1201 cgcgcgaaag ggcggtcacc agctccatgc ccctactacg gcccgagcgg tcggttcggt
     1261 tgggtccggc tcggcgtcag cctcggagtc gccccaggat ctcgtcgtgg agcaggccgt
     1321 tggtcgcgag gaccgtgccc gaatggatcg tgcggcggcc gtcgagatcg gtcagccgcc
     1381 cgcccgcctc ctcgatgatg accaggggag cggcgagatc ccagctcttc gggccgacct
     1441 cgaccatcgc ctccgcggcg ccctcggcga gcagtgcgta gccccagaag tcgccgaacc
     1501 cgcgatcgcg ccagacgtcg ccgatcaggc ccgcgaaccc cggcgccgcg ccgctgtcgg
     1561 cgatctcctg ggcggacccg tacagcaggt gcgcatcggc gagcccggcg acccgggaga
     1621 cgtggatggg ccggcggatc ccggcgtccg ccccgatcgc gctcaccgcc caggctcccc
     1681 cgcctcgtct ggcgaaccag cgtccgccga gggccggcgc actcatgacg ccgagctgca
     1741 gctccccggc ggcctcgacc gccagcagtg tcccgaacag gggcacgccg cgcatgaagt
     1801 tgtgcgtgcc gtcgatcggg tcgatgtacc aggtcacgct cccccgcccc gcctcgtccc
     1861 cgtattcctc gccgaccagg ccgtgatccg ggtgagcctc ggcgatccgg gcgcggatgc
     1921 ctcgctcgat cgcctggtcg gcctcggtca cgaacgatcg gtcgggcttg gtctcgatga
     1981 ccaggtcgcg ccggaagtgc gccagcgcct gcgcgtcggc ctcgtcgcag caggccagcg
     2041 cgaacgccag ccaggcgtcg agctccgcct cggtcggcgt catgagcgga gccgctcgcc
     2101 ggtcggatcg tagagcggct cgcgggcgac ctcgaagccg acccagtcgc cgaacacctc
     2161 cacctccccg cgcgtcccga tggccgatcg ctcggggggc aggtaggcgt aggcgatcga
     2221 ccgctcgacc gcgaacccgt agccgcccga ggtgacccgc ccgacgaccc ggccgtcgat
     2281 ccggaccggc tcgttgccga ggcacaccga gcgcggatcg tcgagcacga ggcagcggag
     2341 ccgcacccgc gggccggcgg cccgggcggc gacgagcgcc tcgcgaccga tgaactcgac
     2401 gcccttgtcg agcttgaccg cgaagccgag gccggcctcg aacggcgtct cgtcgggcgt
     2461 gatgtcgctc gatgtcggtc agctgcgagc ctggcgctcg agccgcttct ggaagcgctc
     2521 gaggtggccg ccaagaacct gtcggccgac gggtgcgcca actgctcgat cccggcgggc
     2581 gacggcgtcc gggtccgaat gctcaaggac ttcgccttcc atgtcgtcgg gaccggggag
     2641 g
//
LOCUS       DATDDI010000737         2881 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_618999, whole genome shotgun sequence.
ACCESSION   DATDDI010000737 DATDDI010000000
VERSION     DATDDI010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618999"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1111
                     /locus_tag="VIU37_10700"
     CDS             <1..1111
                     /locus_tag="VIU37_10700"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY6014471.1"
                     /translation="PVAAPNAILRALRITGYVIAAVALYALVLWRALVFNAEVAAGQS
                     ALGALGAALTRTDDAATTFLGQALQQTVNALSIGAIYALVALGYTMVYGIIELINFAH
                     GDIFMLGAFLSVVFLGGITGQTGGVTSVIPLILLLVGAMLFTMPIIGLLNVGIERAVY
                     RPLRHAPRLAPLITAIGVSFILQNVALTLAGSGDRSAPQIFPLEWQIPFGGASVSVLS
                     IFIFILSVGLMLGLQLFVNRSRLGRAMRATAQDQEASALMGVDLNQTIALTFLLGGML
                     AAAAGVVWGLRFGFVRFDLGFNSGLKAFTAAVLGGIGNITGAALGGFIIGFIENFAAS
                     LGFSRWSEFLVFMILTLVLIFRPTGILGQHSGDRA"
     gene            1120..2319
                     /locus_tag="VIU37_10705"
     CDS             1120..2319
                     /locus_tag="VIU37_10705"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY6014472.1"
                     /translation="MSTQPVAAPSPSPRARLQAFAAVHRSTTIIVGMILITAIMIFLP
                     KIPPLTWIQPEQPWFDGFANAGVFVLLAMGLNVVVGLAGLLDLGYAAFFAIGAYAYAY
                     SNSPFSHMDLPFLPMLVVGAAVAAVFGIALGAPTLRLRGDYLAIMTLGFGEIVPIVFL
                     NLDTWTEGTNGIGGIYRPEALPGLGEFSPLSPFAYFVLMAGIVTIAMILLYRLQDSRI
                     GRAWNAIREDELAAAANGINTVTTKLLAFALGATTAGLAGVFNASKLTIVSPDQFLFT
                     VSFTVLAMVILGGMGNIWGVAAGAFIVFMIQTVLLKQLNTITEGLGIPFLSNINFLDY
                     QFLLYGIALVLMMLFRPEGLFPSQRRRRELHIAEEFADGIGDEASVIGGMGDAPGSDE
                     MFGPDQP"
     gene            2316..>2881
                     /locus_tag="VIU37_10710"
     CDS             2316..>2881
                     /locus_tag="VIU37_10710"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6014473.1"
                     /translation="MSDVLHATRVTKRFGGLLAVNNVDFTIPEQAIVSLIGPNGAGKT
                     TFFNIIAGIYDPTAGRIDFRGETRIARARRAWLEPVLWLIVPGIIALITSLLASAGAP
                     EGELILGIFITVLVLLAILVTGVARPPWYQHLLARIGIFRSARPNDMVVAGLGRTFQN
                     IRLFPNMTAMENVLVGMHSRLKASWIDAL"
BASE COUNT          389 a         1029 c          932 g          531 t
ORIGIN      
        1 gccggtcgcc gcaccaaacg cgatcctccg cgccctccga atcaccggct acgtgatcgc
       61 ggcggtcgcc ctgtacgcct tggtcctgtg gcgggcgctc gtcttcaatg ccgaggtggc
      121 ggccgggcag tcggccctcg gcgcgctcgg cgcggccctg acccgcaccg acgacgcggc
      181 cacgaccttc cttggccagg ccctccagca gaccgtcaac gccctgtcga tcggcgccat
      241 ctacgccctg gtcgcgctcg gctacacgat ggtctacggg atcatcgagc tgatcaactt
      301 cgcccacggc gacatcttca tgctcggcgc gttcctgtcc gtcgtcttcc tgggcgggat
      361 caccggccag acgggcggcg tcacgagcgt gatcccgctg atcctgctcc tggtcggggc
      421 gatgctgttc acgatgccga tcatcggcct gctgaacgtc ggcatcgaac gggccgtcta
      481 ccggccgctg cgccacgccc cacgactggc gccgctgatc acggccatcg gcgtgtcgtt
      541 catcctgcag aacgtggccc tgaccctggc cgggtcgggt gaccgctccg ccccacagat
      601 cttcccgctc gagtggcaga tcccgttcgg cggcgcgagc gtgtccgtcc tgtcgatctt
      661 catcttcatc ctgtccgtgg gcctgatgct cggcctgcag ctgttcgtca accggtctcg
      721 gctgggacgc gcgatgcggg cgacggcgca ggaccaggaa gcgtccgccc tgatgggcgt
      781 cgacctcaac cagacgatcg cgctcacctt cctgctcggc gggatgctgg cggcggcggc
      841 cggcgtggta tggggcctcc gcttcggctt cgtccggttc gacctcggct tcaactcggg
      901 cctgaaggcg ttcacggcgg ccgtgctcgg cggcatcggc aacatcaccg gtgcggcgct
      961 cggcgggttc atcatcggct tcatcgagaa cttcgcggcg tcgctcgggt tctcgcgctg
     1021 gtccgagttc ctcgtgttca tgatcctgac gctcgtcctg atcttccggc cgacgggcat
     1081 cctcggccag cactccgggg accgggcatg accgcggcga tgagcaccca gccggtcgcc
     1141 gcgccctcgc cgtcgccgcg ggcacggctc caggccttcg cggcggtcca tcgctcgacg
     1201 acgatcatcg tcgggatgat cctgatcacg gcgatcatga tcttcctgcc caagatcccg
     1261 ccgctgacgt ggatccagcc ggagcagccc tggttcgacg gcttcgcgaa cgccggcgtg
     1321 ttcgtcctcc tggcgatggg cctcaacgtg gtcgtcggcc tggcgggcct gctcgacctc
     1381 gggtacgcgg ccttcttcgc gatcggggcg tacgcctacg cgtactcgaa ctcgccgttc
     1441 tcgcacatgg acctgccgtt cctgccgatg ctggtcgtcg gcgcggcggt cgcggccgtg
     1501 ttcggcatcg cgctgggcgc gccgaccctc cgcctgcgcg gcgactacct ggcgatcatg
     1561 accctcgggt tcggggagat cgttccgatc gtcttcctga atctcgacac ctggaccgag
     1621 ggaaccaacg ggatcggcgg catctaccgc ccggaggcgc tgccggggct cggcgagttc
     1681 tcgccgctca gcccgttcgc ctatttcgtg ctgatggccg ggatcgtgac gatcgcgatg
     1741 atcctgctct accggctcca ggattcgcgg atcggccgtg cctggaacgc gatccgcgag
     1801 gacgagctgg ccgccgcggc caacggcatc aacaccgtca ccaccaagct gctcgcgttc
     1861 gccctgggtg ccacgaccgc cggcctcgcg ggcgtcttca atgcgtcgaa gctgaccatc
     1921 gtgtcgccgg accagttcct gttcacggtc tcgttcaccg tcctggccat ggtcatcctc
     1981 ggcggcatgg gcaacatctg gggggtcgcg gccggagcgt tcatcgtgtt catgatccag
     2041 accgtcctgc tcaagcagct caacacgatc accgagggtc tgggcatccc gttcctgtcg
     2101 aacatcaact tcctggacta ccagttcctg ctctacggga tcgccctggt gctgatgatg
     2161 ttgttccgcc cggagggcct gttcccgagc cagcgccgcc ggcgcgagct ccatatcgcc
     2221 gaggaattcg ccgacgggat cggcgacgag gcgtcggtca tcggcgggat gggcgatgcg
     2281 cccgggagtg acgagatgtt cgggccggat cagccatgag cgacgtcctc cacgccaccc
     2341 gggtcaccaa gcggttcggc ggcctgctcg ccgtcaacaa cgtggacttc acgatccccg
     2401 agcaggcgat cgtcagcctg atcggcccca acggcgcggg caagaccacc ttcttcaaca
     2461 tcatcgccgg gatctacgac ccgaccgccg ggcggatcga cttccggggc gagacccgca
     2521 tcgcgcgggc caggcgggca tggctcgagc cggtgctctg gctgatcgtc cccggcatca
     2581 tcgcgttgat cacatccctg ctcgcctcgg ccggggcccc ggagggcgag ctgatcctcg
     2641 gcatcttcat cacggtgctc gtgctgctgg cgatcctggt gaccggggtc gcgcgaccgc
     2701 cgtggtacca gcacctcctg gcccggatcg ggatcttccg cagcgcgcgc cccaacgaca
     2761 tggtcgtggc cgggcttggc cgcaccttcc agaacatccg gcttttcccg aacatgacgg
     2821 cgatggagaa cgtactggtc gggatgcatt cgcggctgaa ggcgagctgg atcgacgccc
     2881 t
//
LOCUS       DATDDI010000738         4400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_681616, whole genome shotgun sequence.
ACCESSION   DATDDI010000738 DATDDI010000000
VERSION     DATDDI010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4400
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681616"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1539)
                     /locus_tag="VIU37_10715"
     CDS             complement(<1..1539)
                     /locus_tag="VIU37_10715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014474.1"
                     /translation="MTDNPFDADLESIAGSLGMPSSFQQLRSLLQSLPAPLPPEIRSA
                     ITGQVSTSEPGTQQAQIASTMTGSAPGSESGAALGVVSEIYYANSNLLDNPTFAGMNA
                     AAAVAITPALTDVDWAERWQAFYVLNSGVAPTVTIELIDDRFQANGFHPFNVNLPFVK
                     VVPGAGAFDATVVIHPRSSWQQFFDTQLAYVTAAMKASTMGGVHDANTTVMQTWVELW
                     DTNGGGTLLATSPVIDWLDPAINVDSVYRQTAFDPSTFAATYAYQMRFCFRVAKSSAA
                     GWEGMNFGEAVMALTTTQAPPPFSPIIGRWRPSSVRVANAGDTRPRLLVGAENDESVA
                     SPAIQFGPGGGTAPDVQIKRRTAGGIQVSSLTAADDALAVGDDAEIFDVDVADSIGIR
                     GQGTPANARLYFGSGKDIYLFRQAAGELKASGHLDAAGIVTGNHGAAGKAVQVGTSDG
                     GATTGPGITFNGDTFLSRPNASRLALGPTAGQPAYWWANPPNTHDGGLLVSRSGDVDF
                     RLQAV"
     gene            complement(1536..2660)
                     /locus_tag="VIU37_10720"
     CDS             complement(1536..2660)
                     /locus_tag="VIU37_10720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014475.1"
                     /translation="MSYLRKIQYHAVIYAPDGSGGPGTPKLELDADMLNLVWQQGLNF
                     PGQCAFSLTRWNRKIADLAWMIDHIKVFRETPAGTRTVFAGKIIKPSYTGRDLVVTCW
                     DYMSFLQRSRTGFRVMYPNKKIGTEIVSPEWALAKAVTDSPFAFVATGTIEDPLALDG
                     VTPITTNSEFGVVDFDRLFVFYAMAELSMANTSNTVVFEITREAPHTFNFWKNRSTAR
                     TNYAFPDAALIDYDYSGNQDQIQNDIATVIVDPTTGQQVEYSLVDTGSSSTYRRLQSA
                     VTIKTLFGITSGTTATDQQKAALARMLNVSATPPNLIVAFPRQGEFDPFVNCDLGDTF
                     RTTLRKADRSGDEIDQYMKWSGVAAAWSPEAGELMQVFLR"
     gene            complement(2657..3571)
                     /locus_tag="VIU37_10725"
     CDS             complement(2657..3571)
                     /locus_tag="VIU37_10725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014476.1"
                     /translation="MSIERHRATWRSITFNQRYADAGLAPDNPDNLTEALLNSDYYLD
                     SCDPTRVSVQDYRELRQFLEGAEPNEAYEGVRALNGIGRIVGATYADLEDKTWAMFEA
                     FSVAATRIAAQTADPVGLLPFSFKRDTAPAVGIDGASTAKALRFYCRPGPGRPVIIGR
                     RQGGLVRPFSFQLIAFDPFAYDETQTLTIPPLGGGNVTNPGNIYTRPKIRFNFNGAGS
                     ATLTINNTTTGKTFVLNASTAAVGESWELDVARGVITRLSDGANRYSQRVSGYISDMW
                     LAAGVNAFTFANTANVIDCQVRFRGAYA"
     gene            complement(3574..4200)
                     /locus_tag="VIU37_10730"
     CDS             complement(3574..4200)
                     /locus_tag="VIU37_10730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014477.1"
                     /translation="MGTTVALLRSTYVDGYLGRTAGQTIPWSDPQVQQHITDALTKLW
                     PDVGSRATGVVTATDTTGIYTIPASIKRVSRIVLEYVSGGKTDIVDTITNWRYETDTT
                     IRIQPRITTLAGLSLRVYGWKAYLADATDLPTDLEATVAERAAALAYGSLAGQLANSQ
                     RQQGLDSGRVIDYQTAVGMSAYYERRYQEAIDKYPAQVGPVAPRAARR"
     gene            complement(4216..>4400)
                     /locus_tag="VIU37_10735"
     CDS             complement(4216..>4400)
                     /locus_tag="VIU37_10735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014478.1"
                     /translation="DLCPRLQEFQTAEDLALHVKAVHTAVDLDEAGNPVGDGSGGTAD
                     NAASKDAAEPPAAKVK"
BASE COUNT          623 a         1470 c         1566 g          741 t
ORIGIN      
        1 caccgcctgg agccggaagt cgacgtcacc ggaccgggac acgagcagcc cgccatcgtg
       61 ggtgtttggc gggttggccc accagtacgc aggctggccc gcggtcggcc cgagtgcgag
      121 ccggctcgcg ttcgggcggg agaggaacgt gtcgccgttg aacgtgatcc cgggcccggt
      181 cgtggccccg ccgtccgacg tcccgacctg caccgccttc ccggcggcgc cgtggttgcc
      241 ggtgacgatg cccgcggcat cgaggtgccc gctcgccttg agctcgcccg ccgcctgccg
      301 gaacaggtag atgtccttgc cggatccgaa gtagaggcgg gcgttggccg gcgtcccctg
      361 cccccggatc ccgatcgagt ccgcgacgtc gacgtcgaag atctctgcgt cgtccccgac
      421 cgccagggcg tcgtcggccg cggtcagcga ggagacctgg atgccgcccg cggtgcgccg
      481 cttgatctgg acgtcgggcg ccgtcccgcc gcccggaccg aactggatcg ccgggctcgc
      541 gaccgactcg tcgttctccg cgcccacgag cagccgcggg cgggtgtcgc ccgcgttggc
      601 gacccggacg ctcgagggcc gccaacggcc gatgatcggc gagaacggcg gcggggcctg
      661 cgtcgtggtg agcgccatga ccgcctcgcc aaagttcatc ccctcccagc ccgcggcact
      721 cgacttggcg acccggaagc agaaccgcat ctggtacgcg taggtggcgg cgaaggtcga
      781 cgggtcgaac gccgtctggc ggtacacgct gtcgacgttg atagcggggt ccagccagtc
      841 gatcaccggg cttgtggcga gcagcgtccc gccgccgttc gtgtcccaca gctcgaccca
      901 cgtctgcatg accgtcgtgt tggcgtcgtg gacgccgccc atcgtcgaag ccttcatcgc
      961 cgcggtgacg taggccagct gggtgtcgaa gaactgctgc caggagctcc gggggtggat
     1021 gacgaccgtc gcgtcgaacg cgcctgcgcc ggggaccacc ttgacgaagg gcaggttgac
     1081 gttgaacggg tggaagccgt tggcctggaa ccgatcgtcg atgagctcga tcgtgacggt
     1141 cggagcaacg ccagagttga gaacgtagaa cgcctgccag cgttccgccc aatcgacgtc
     1201 cgtcagggcg ggcgtgatgg cgacggccgc ggccgcgttc atcccggcga aggtcgggtt
     1261 gtcgagcagg ttcgagttgg cgtagtagat ctcggacacg acgcccaggg cggcgcccga
     1321 ctcggacccc ggcgcggatc cggtcatggt cgaggcgatc tgcgcctgct gggtgccagg
     1381 ctcgctggtg ctcacctgcc cggtgatcgc gctccggatc tcgggcggca gcggggcagg
     1441 cagcgactgg agcagcgacc gaagttgctg gaacgaggac ggcatcccca gcgaaccggc
     1501 aatgctctcg aggtcggcgt cgaacgggtt gtcagtcatc ggaggaacac ctgcatcagc
     1561 tcaccggcct ccgggctcca cgccgcggcg acgccggacc acttcatata ctggtcgatc
     1621 tcgtccccgc tccggtcggc cttgcgcagc gtcgtccgga acgtgtcccc caggtcgcag
     1681 ttgacgaacg ggtcgaactc gccctgccgc gggaacgcga cgatgaggtt gggcggggtg
     1741 gccgacacgt tgagcatccg ggccagcgcc gccttctgct ggtcggtcgc cgtggtgccc
     1801 gacgtgatgc cgaacagggt cttgatcgtg accgcgctct ggagccgccg gtaggtgctc
     1861 gaggatccgg tgtccaccag cgaatactcc acctgctggc cggtcgtggg gtcgacgatg
     1921 accgtcgcga tgtcgttctg gatctggtcc tggttgccgc tgtagtcgta gtcgatcagc
     1981 gccgcgtcgg ggaaggcgta gttggtccgg gcggtgctcc ggttcttcca gaagttgaac
     2041 gtgtgcggcg cctcgcgggt gatctcgaac acgacggtgt tggacgtgtt cgccatcgac
     2101 agctcggcca tcgcgtagaa cacgaacagg cggtcgaagt cgaccacgcc gaactcgctg
     2161 ttggttgtga tcggcgtcac gccgtcgagc gccaggggat cctcgatcgt gcccgtggcg
     2221 acgaacgcga acgggctgtc cgtgaccgcc ttcgccagtg cccactcggg gctcacgatc
     2281 tcggtcccga tcttcttgtt ggggtacatc acccggaagc cggtccgcga tcgctggagg
     2341 aacgacatgt agtcccagca cgtgaccacg aggtcgcgcc ccgtgtagct gggcttgatg
     2401 atcttcccgg cgaacacggt cctggtcccg gccggcgtct cgcggaagac cttgatgtgg
     2461 tcgatcatcc acgcgaggtc cgcgatcttc ctgttccagc gggtcaggct gaacgcgcac
     2521 tggccgggga agttgagccc ctgctgccag acgaggttca gcatgtccgc gtcgagctcc
     2581 agcttgggcg tgccgggccc gccggatccg tcaggggcgt agatgaccgc gtggtactgg
     2641 atcttgcgca ggtagctcac gcatacgccc cccggaaccg cacctggcag tcgatcacgt
     2701 tggcggtgtt ggcgaacgtg aaggcgttga cgcccgcagc gagccacatg tcgctgatgt
     2761 agcccgacac ccgctggctg tagcggttcg caccgtccga caggcgggtg atgacgcccc
     2821 gggcgacgtc gagctcccac gactcaccga ccgcagcggt cgaggcgttg aggacgaacg
     2881 tcttgccggt cgtcgtgttg ttgatcgtca gcgtggcgga tccggcgccg ttgaagttga
     2941 accggatctt gggccgggtg tagatgttgc cggggttggt gacgttgccc ccgcccagcg
     3001 gcgggatcgt cagcgtctgc gtctcgtcgt acgcgaacgg gtcgaacgcg atcagctgga
     3061 acgagaacgg ccggacgagg ccgccctgcc gccgcccgat gatgaccgga cgcccgggcc
     3121 ccggccggca gtagaaccgg agggccttcg ccgtcgacgc gccgtcgatc ccgaccgcgg
     3181 gcgcggtgtc gcgcttgaac gagaacggca ggaggcccac gggatccgcg gtctgcgcgg
     3241 cgatccgggt cgcggcgacg gagaacgcct cgaacatcgc ccacgtcttg tcctcgaggt
     3301 cggcgtaggt cgcgcccacg atccgcccga tcccgttgag cgcgcgcacg ccctcgtacg
     3361 cctcgttggg ctcggcgccc tcgaggaact ggcgcagctc gcggtagtcc tgcaccgaca
     3421 cccgggtggg gtcgcacgag tcgaggtagt agtcgctgtt cagcagcgcc tcggtcaggt
     3481 tgtccgggtt gtcgggggca aggcccgcgt cggcgtaccg ctggttgaag gtgatcgacc
     3541 gccaggtcgc gcgatgccgc tcgatgctca cggctacctc cgcgcggcgc ggggagccac
     3601 gggcccgacc tgcgccgggt acttgtcgat cgcctcctgg taccggcgct cgtagtaggc
     3661 gctcatgccg accgccgtct ggtagtcgat gacccgcccg gagtcgaggc cctgctggcg
     3721 ctggctgttc gccagctgcc cggccaggga gccgtacgcg agcgccgccg ccctctcagc
     3781 caccgtcgcc tccagatcgg tcgggaggtc ggttgcatcc gctaggtacg ccttccagcc
     3841 gtagacccgc agcgacagtc cggcgagggt ggtgatgcgc ggctggatcc ggatcgtcgt
     3901 gtccgtctcg tagcgccagt tggtgatcgt gtccacgatg tcggtcttgc cgccggacac
     3961 gtactccagc acgatccggg agacgcgctt gatcgacgcc gggatcgtgt agatccccgt
     4021 cgtgtcggtc gcggtcacga cccccgtcgc ccgggaaccc acgtcaggcc agagcttcgt
     4081 cagcgcatcg gtgatgtgct gctggacctg tgggtcggac cacgggatgg tctgtcccgc
     4141 ggtccgaccc aggtagccgt cgacgtaggt ggagcgaagg agggcgacgg tggtacccat
     4201 gtcaccctcc cccggctact tgaccttggc ggcgggcggc tcggctgcgt ccttcgacgc
     4261 cgcgttgtcg gccgtccccc cggatccgtc gcccaccggg ttgccggcct cgtcgaggtc
     4321 gacggccgtg tggaccgcct tgacgtggag agccagatcc tcggcggtct ggaactcctg
     4381 gagccgcggg cacaggtcgc
//
LOCUS       DATDDI010000739         1874 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_598550, whole genome shotgun sequence.
ACCESSION   DATDDI010000739 DATDDI010000000
VERSION     DATDDI010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598550"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1327
                     /locus_tag="VIU37_10740"
     CDS             <1..1327
                     /locus_tag="VIU37_10740"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014479.1"
                     /translation="GPMTPRDPLLPNAGIIARREYRDRVRSPLYIVSTIVLMGLALLV
                     ALAPIGIRYLDRGTVTRIAVVSGDAGLAQRSVAVADGILNSPPPGVDPATFQKPYRLE
                     VTSADNGQVGLVKGELSAILLVQRLANGQVDVTLRTAESAASARNQLLQVAAFGIGVL
                     DWSSRLPPGTDAPPFVTPAFRVDSLVSATDGGRPLGAQEAASRGFLGVVFVVLLFMSV
                     IIYGMWVATGVAAEKSSRVMELMISAASPRQLLTGKVVGIGAAGLTQYLAIAVPALAV
                     LAFQDRIAAAVLGPGWSEGAPIVGLTPTLLAGYGVFFLLGFGLFALIYAAMGSFVSRP
                     DDLQTLSLPLSLVAIAGYLTAIVALSGGGGTWIRAASLLPPFSPFVMLARIMVTAVQP
                     WELVVSIGLLLVAVAIVSVVAARMYAAGVLLYGQRPGIRAFVAAARRAG"
     gene            complement(1349..>1874)
                     /locus_tag="VIU37_10745"
     CDS             complement(1349..>1874)
                     /locus_tag="VIU37_10745"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014480.1"
                     /translation="LSALAVRVAARSAILDGELVVVDRTGRADARELARRLSGTPGAP
                     AAFLCFDLLHLDGRSLLSQPLVRRREALRRILRPGDEVVAVPAIATEGVALYEAAVAQ
                     GIAGIMARQRTSPYLPGIRSRLWRYVAAGAPVARNPADVAISSDAILGEPSPVATAPV
                     IALISRLPFDDLEA"
BASE COUNT          226 a          661 c          709 g          278 t
ORIGIN      
        1 ggggccgatg acgccgcgcg atccactcct cccgaacgcc gggatcatcg cccggcgcga
       61 gtaccgcgac cgcgtccgga gcccgctcta catcgtgtcg acgatcgtgc tgatgggtct
      121 cgcgctgctg gtcgccctgg cgccgatcgg gatccgctat ctcgaccgcg ggaccgtgac
      181 gcggatcgcc gtggtgtccg gcgacgccgg gctcgcccag cggtcggtcg cggttgccga
      241 cggcatcctc aacagcccac cgcccggggt cgacccggcg accttccaga agccgtaccg
      301 cctggaggtg acgtccgcgg acaacggcca ggtggggctg gtgaagggcg agctgtcggc
      361 gatcctgctc gtccagcgac tggcgaacgg tcaggtggac gtcacgctgc ggacggccga
      421 gagcgcggcc agcgcacgca accagctgct ccaggtcgcg gccttcggca tcggcgtcct
      481 cgactggagc tcgcgcctgc cgcccggcac cgacgcgccg ccgttcgtga cgcccgcgtt
      541 ccgggtcgac tcgctcgtca gcgcgaccga cggcggccgg ccgctgggtg cccaggaggc
      601 ggcgagccgc ggattcctcg gggtcgtctt cgtcgtgctg ttgttcatga gcgtgatcat
      661 ctacgggatg tgggtcgcga cgggggtcgc cgccgagaag agcagccggg tcatggagct
      721 gatgatcagc gcggcgtcgc cccgccagct gctgaccggc aaggtcgtag ggatcggcgc
      781 ggcgggactc acccagtacc tcgccatcgc cgtgccggcc ctcgccgtcc tggccttcca
      841 ggatcggatt gccgcggccg tcctgggtcc cggctggagc gagggcgccc cgatcgtggg
      901 cctgacgccg acgctgctgg ccgggtacgg ggtcttcttc ctgctcgggt tcgggctgtt
      961 cgccttgatc tacgcggcga tgggctcgtt cgtcagccgt ccggacgacc tgcagacgct
     1021 gtcgctgccg ctcagcctgg tcgccatcgc cgggtacctg accgcgatcg tggcgctcag
     1081 cggcggcggt ggcacgtgga tccgggcggc gtcgctgctg ccgccgttca gcccgttcgt
     1141 gatgctcgcg aggatcatgg tgacggccgt ccagccgtgg gagctggtgg tgtcgatcgg
     1201 gctgctgctc gtcgccgtcg cgatcgtgtc cgtcgtggcg gcccggatgt acgcggccgg
     1261 cgtgctcctg tacgggcagc ggccggggat ccgggcgttc gtggcggccg cgcggcgggc
     1321 cgggtagacc ggggcggctc cgcgtgcgtc aggcctcgag gtcgtcgaac ggcagccggc
     1381 tgatcagcgc gatcacgggc gcggtggcga ccggggacgg ctccccgagg atcgcgtcac
     1441 tcgagatggc aacgtcggcc gggttcctgg cgaccggcgc accggcggcc acgtatcgcc
     1501 acaaccggct ccggatcccg ggcaggtacg ggctcgtccg ctggcgagcc atgatcccgg
     1561 cgatcccctg cgcgacggcg gcctcgtaga gcgcgacgcc ctcggtcgcg atcgccggca
     1621 ccgcgacgac ctcgtcaccc ggccggagga tccggcgcag ggcctcccgc cgtcgcacga
     1681 ggggttggga caacagcgag cggccgtcga ggtgcaacag gtcgaaacac aggaaggccg
     1741 ccggggcgcc gggcgtgccc gagaggcggc gtgccagttc ccgggcatcg gcgcgtccgg
     1801 tccggtcgac gacgaccagc tcgccgtcga ggatggccga gcgtgccgcg accctgaccg
     1861 ccagcgcgga cagc
//
LOCUS       DATDDI010000740         1593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_265792, whole genome shotgun sequence.
ACCESSION   DATDDI010000740 DATDDI010000000
VERSION     DATDDI010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265792"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..582
                     /locus_tag="VIU37_10750"
     CDS             130..582
                     /locus_tag="VIU37_10750"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEY6014481.1"
                     /translation="MGTPTPITTALDRAGYRLTAPRQALAALIADQDGHFTAAGLVAA
                     ARNRRLGVGRATVFRTLEVLEAIGAIERLDLPGGEHAYVGCEPAHHHHVVCSRCGRTS
                     EIRDADLQRVVRHVARQTGYRVDEHRLELFGLCPACLAGDATPAGTDA"
     gene            584..1330
                     /locus_tag="VIU37_10755"
     CDS             584..1330
                     /locus_tag="VIU37_10755"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEY6014482.1"
                     /translation="MPVTAILVSAGAFLSAFAGGLVAIRAARQVGMIIAIGAGIRIGA
                     AFFDLIPEAETMVGGSLNTVMLATAVGFLAFYGVEKLTTVHVGHEAAVELDHGDAAHR
                     HVGVIGASGMSIHSFLDGVALAAGLLVGGGLGLVIAVVVIVHRFSDGISVVSMLMASR
                     TPVRETYRWVSVVAIAPVLGVLLGTVISVPDEVLGIMLAVFAGFFLYVGAAELLPEAH
                     RSNRSRWVVVGTLAGVVAIYLFSVATGAAG"
     gene            complement(1362..>1593)
                     /locus_tag="VIU37_10760"
     CDS             complement(1362..>1593)
                     /locus_tag="VIU37_10760"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY6014483.1"
                     /translation="LVEPGRATTIPAPPVAVVDSTGAGDTLNGALAAGLAEGLPIGDA
                     AARAVCAASLATTRAGAREGMPTIDELRAAGR"
BASE COUNT          187 a          576 c          591 g          239 t
ORIGIN      
        1 ccagcatcgc gacgggcacc cggggcgagg cagtgccgac cggcccgaag gcgccgggcc
       61 ctttggaccg gcgccgggaa cctcgccgag gctattgaga ctctgtctca ttcgtgatac
      121 gctccggcgg tgggaacacc gacaccgatc acgaccgccc tggaccgcgc cggctaccgc
      181 ctgacggcgc cgcgacaggc gctggccgcg ctgatcgccg accaggatgg ccacttcacg
      241 gcggccgggc tcgtcgcggc cgccaggaac cgtcgtttgg gcgtgggtcg ggcgaccgtc
      301 ttccggaccc tcgaggtgct cgaggccatc ggcgcgatcg agcgtctcga cctgccgggc
      361 ggcgaacacg cctacgtcgg ctgcgagccg gcccaccacc accacgtcgt ctgttcgcgc
      421 tgcgggcgga ccagcgagat ccgggacgcg gacctccagc gggtcgtccg gcacgtggcc
      481 cgccagaccg gctaccgcgt cgatgagcat cgcctcgagc tgttcggcct gtgcccggcc
      541 tgcctggccg gcgacgccac gccggcgggc acggacgcct gacatgccgg tcacggcgat
      601 cctcgtgtcg gcgggggcgt tcctgtccgc gttcgcgggc gggctggtcg ccatccgggc
      661 ggcccgtcag gtcgggatga tcatcgcgat cggcgccggg atccggatcg gcgcggcgtt
      721 cttcgacctg atcccggagg ccgagacgat ggtcggcggc tcgctcaaca cggtgatgct
      781 ggcgaccgcg gtcggcttcc tggcgttcta tggcgtcgag aagctgacca ccgtccacgt
      841 cgggcacgaa gcggcggtcg agctcgacca cggcgacgcc gcgcaccgtc acgtcggggt
      901 catcggcgcg agcgggatga gcatccacag cttcctcgac ggcgtggcgc tggcggccgg
      961 cctgctcgtc ggcggcgggc tcggactggt catcgcggtg gtcgtcatcg tccaccggtt
     1021 cagcgacggc atctccgtcg tgagcatgct gatggcgagc cggaccccgg ttcgcgagac
     1081 ctatcgctgg gtgtcggtcg tggcgatcgc cccggtgctc ggcgtcctgc tcggcacggt
     1141 gatcagcgtg ccggacgagg tcctcgggat catgctggcg gtcttcgccg ggttcttcct
     1201 ctacgtcggc gccgcggagc tgctgcccga ggcgcaccgc tccaatcggt cgcgttgggt
     1261 cgtggtcggc acgctggccg gcgtcgtggc gatctacctg ttctcggtgg cgacgggggc
     1321 cgccgggtag gctcggggcc cgggacggac gacggccgcc gtcagcgacc ggccgcccga
     1381 agctcgtcga tcgtcggcat cccttcacgc gccccggcgc gcgtcgtcgc gagcgaagcc
     1441 gcgcagacgg cccgcgccgc cgcgtcgccg atcggcaggc cctccgcgag tccggccgcc
     1501 agtgccccat tgagcgtgtc gcctgcgccg gtcgaatcga cgaccgcgac cggcggcgcg
     1561 gggatcgtcg tggcccggcc gggttccacg agc
//
LOCUS       DATDDI010000741         1685 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_244760, whole genome shotgun sequence.
ACCESSION   DATDDI010000741 DATDDI010000000
VERSION     DATDDI010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244760"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VIU37_10765"
     CDS             complement(<1..564)
                     /locus_tag="VIU37_10765"
                     /inference="COORDINATES: protein motif:HMM:NF024586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY6014484.1"
                     /translation="MAQIGSYTLDVASGRWTSSRGLDAILGIDATYERSVEGWASLIH
                     SHDRDAMLAYFAGDVVGRHGRFDRQYRIVRADTREERWVHGRGVLDLDRTGRPVRMVG
                     TIADITDQRVLEARNRRLAQALVQTSEAVLITGPAGEFEFANPAFERLSGLTQQDLRG
                     QTMGSLAGEIPVPTLADVSRTLTEGGPW"
     gene            491..757
                     /locus_tag="VIU37_10770"
     CDS             491..757
                     /locus_tag="VIU37_10770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014485.1"
                     /translation="MASRPLELVQRPDATSSVYEPICAIDSTASSSSEAEYDRSAGLA
                     GLAGLAGLAGSVTEPRPVLDRRTRVDAGGPPRGSDGDGLIAGRG"
     gene            complement(974..>1685)
                     /locus_tag="VIU37_10775"
     CDS             complement(974..>1685)
                     /locus_tag="VIU37_10775"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY6014486.1"
                     /translation="DGVIDGVLPQQRGLEPSTLEGPRDVETHVADEIAVLDHLGWDRA
                     WLMGHSWGGLLAMHLAVAHPDRVRGLVLFDTLGAIPDGGRAALSANLVSRLRPRDRAR
                     LDAFIELQQSGDEEPTLVAQILTTLWPSYSYVYDEVPAPRPLRLEVPLPDVPDTMASV
                     EAHWAAGTLERALPKLDLPALLVHGVADPLPSSASIETAALIPGARLELVERSGHFPW
                     LERPDHVRPLVEAFLSER"
BASE COUNT          254 a          588 c          613 g          230 t
ORIGIN      
        1 ccacgggccg ccctcggtca gggtccggct gacgtccgcg agtgtcggta cggggatctc
       61 gccggcgagc gagcccatgg tctgcccgcg gaggtcctgt tgcgtgaggc cactgaggcg
      121 ctcgaaggcc gggttcgcga actcgaactc accggccgga ccggtgatca ggacggcctc
      181 gctcgtctgg accagcgcct gcgccagccg acggttccgc gcctccagga cgcgctggtc
      241 cgtgatgtcc gcgatcgtcc cgaccatccg cacgggtcgg ccggtccggt cgagatcgag
      301 cacaccgcgc ccatggaccc agcgctcctc gcgggtgtcc gcacgcacga tccgatactg
      361 ccggtcgaag cggccgtgcc gaccgacgac gtcgccggcg aagtacgcga gcatcgcgtc
      421 gcggtcgtgg gaatgaatga gcgaggccca gccctcgacg gaacgctcat acgtggcgtc
      481 gatcccgagg atggcgtcga ggcccctcga gctcgtccag cggcccgatg cgacgtcgag
      541 cgtgtatgaa ccgatctgcg cgatcgactc gaccgcgtcg agctcatccg aggccgagta
      601 cgaccgatcg gccggactgg ccggactggc cggactggcc ggactggccg gcagcgtgac
      661 cgagccacgt cctgtgctgg atcggcgaac acgggtcgac gctggcggcc cgccgcgtgg
      721 cagtgacggt gacgggctga tcgcgggccg gggttgaccg cttggcatcg ggcgcgcgtg
      781 acctctggcg gcatctgcag caaacggcga atcagggccc ccggaggcag atcccgttgc
      841 cgtgtcgcac cattaggcgc ttgccggcct tcttttgcag cagaccatcg gtacttcgac
      901 gggtgacaaa ggtccggaag acggcatgct cccctcgtcg agcgccgcgc cacgcgcgag
      961 ccgacgagtc acatcaccgc tccgacagaa acgcctcgac cagcgggcgg acgtggtcag
     1021 ggcgctcgag ccacgggaag tggccggatc gctcgaccag ctcgaggcgg gcgcccggga
     1081 tcagtgccgc cgtctcgatc gaggcgctcg acggcagcgg atcggcgacg ccgtggacga
     1141 ggagggccgg caggtcgagc ttcggaagcg cccgctccag cgtgccggcc gcccagtgcg
     1201 cctccaccga cgccatcgtg tccgggacgt ccggcagtgg gacctccagc cggagcgggc
     1261 ggggcgccgg cacctcgtca tagacgtagg agtaggacgg ccagagcgtg gtgaggatct
     1321 gggcgacgag cgtcggttcc tcatcgccgg actgctggag ctcgatgaac gcatccaggc
     1381 gggcccggtc ccgcggccgg aggcgggaca cgaggttggc cgacagtgcc gcccgcccgc
     1441 cgtcggggat cgccccgagc gtgtcgaaca gcacgagccc tcggacgcga tccggatggg
     1501 cgacagcgag gtgcatcgcc agcagcccgc cccacgagtg ccccatcagc caggcccggt
     1561 cccagccgag gtggtcgagg acggcgatct cgtcggcgac gtgcgtctcg acgtcgcgcg
     1621 gaccctccag ggtgctcggc tcgaggcctc gctgctgtgg caggacgccg tcgatcactc
     1681 cgtcc
//
LOCUS       DATDDI010000742         1844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_557193, whole genome shotgun sequence.
ACCESSION   DATDDI010000742 DATDDI010000000
VERSION     DATDDI010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_557193"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VIU37_10780"
     CDS             <1..322
                     /locus_tag="VIU37_10780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014487.1"
                     /translation="LPSLPTSWAVVLGVAIRLGADWTAVDPEQTIAKLGDRPVLLIHG
                     TADALDRPAESAERNFHAALDAGVPAELEYCRGATHGAVIDSCPADWARWATSFLEGA
                     AART"
     gene            407..844
                     /locus_tag="VIU37_10785"
     CDS             407..844
                     /locus_tag="VIU37_10785"
                     /inference="COORDINATES: protein motif:HMM:NF016221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEY6014488.1"
                     /translation="MRPRPRLLAAVVATVVAIAACSSVSGAPTIAQPWARSAPAGGNS
                     AAYLTITGAAGQADALLSASSPVADMVQVHEVSTDTSGMTGMHPIDRLEVPAGATVTL
                     EPGGYHLMIMGLKRELNAGGTIELDLVFEHAGKVVVQAEIRQA"
     gene            846..>1844
                     /locus_tag="VIU37_10790"
     CDS             846..>1844
                     /locus_tag="VIU37_10790"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY6014489.1"
                     /translation="MFDRPTGSNPEHDSARVLDGGFWLVVAMAAVCGVLVLAMLGRAV
                     LAPDGGAQPGWTAAAGVASGSGAPTGPDGGTGASPTGAAGSATPVDVAAFLYPTPRPA
                     PSIELTDQDGRPFSLTSFRGEPTMVFFGYTHCPDVCPATIGTMGLAMSAFGPGLHAVF
                     VTVDPERDTPPWLKEYVRFLPAGFVALTGSAAEIKATADAWGVRYARVEGTTPDNYAM
                     SHTADVYVLDANGRLRGHFPFGTEAPAMTETLREVVATTSVAVASPTAPPPTAPAATA
                     VASATPGSPSALGVTVVSSAVWAGSSTPVILTLDNGGTPLDDPGLAPSVQLQNALGA"
BASE COUNT          228 a          719 c          641 g          256 t
ORIGIN      
        1 gctgccgtcg ctgccgacct cgtgggccgt ggtcctcggc gttgccatcc ggctcggcgc
       61 ggactggacc gcggtggacc cggagcagac gatcgcgaag ctcggggacc ggccggtgct
      121 gctgatccac ggcacggccg acgccctcga tcggccggcc gagagcgccg agcggaactt
      181 ccacgcggca ctcgacgccg gcgtcccggc cgagctcgag tactgccggg gcgccaccca
      241 tggcgcggtg atcgacagct gcccggccga ctgggctcgc tgggcgacgt ccttcctgga
      301 gggcgccgcg gcccggacct aggcgcgcga tcgtcccggc cgggcccgga atcaggggcc
      361 gaatggacct gttcccgcac cgagcggatc gctaccgtct ccgccgatgc gtccacgtcc
      421 tcgcctgctc gcggccgtcg tcgccacggt cgttgccatc gccgcgtgct ccagcgtctc
      481 cggggcaccc acgatcgccc agccgtgggc gcgttcggcg ccggccggcg gcaacagtgc
      541 ggcgtacctc acgatcaccg gtgcggccgg tcaggcggat gccctgctct cggcgtcgag
      601 ccccgtggcc gacatggtcc aggtccacga ggtctcgacc gacacgtccg gcatgaccgg
      661 catgcacccc atcgaccggc tcgaggtccc cgccggcgcc acggtcacgc tcgagcccgg
      721 cggctaccat ctgatgatca tgggcctcaa gcgggagctc aacgcgggcg gcacgatcga
      781 gctcgacctg gtgttcgagc acgccggcaa ggtcgtggtc caggcggaga tccgacaggc
      841 ctgacgtgtt cgatcgtccc accggctcga accccgagca tgactccgcc cgcgtcctgg
      901 acggcggctt ctggctggtc gtcgccatgg cggccgtctg cggcgtcctc gtcctggcga
      961 tgctgggtcg tgcggtcctc gctccggacg ggggcgcgca acccggctgg acggcggccg
     1021 ccggcgtggc gagcggctcg ggcgccccga cgggacccga cggcggcacc ggcgcaagcc
     1081 cgaccggagc ggccggctcc gcgacgcccg tcgacgtcgc cgcgttcctc taccccaccc
     1141 cgcgaccggc tccgtcgatc gagctgaccg atcaggacgg ccgtcccttc tcgctcacgt
     1201 cgttccgtgg cgaaccgacg atggtcttct tcggctacac ccactgcccg gacgtctgcc
     1261 cggcgacgat cggcacgatg ggtctcgcga tgagcgcctt cggacccgga ttgcacgccg
     1321 tcttcgtgac cgtcgacccc gaacgcgaca ccccgccgtg gctcaaggag tatgtccgct
     1381 tcctgccggc cggcttcgtc gccctgaccg ggtccgcggc cgagatcaag gccaccgccg
     1441 acgcgtgggg cgtccgctac gcccgagtcg agggcacgac gccggacaac tacgcgatgt
     1501 cgcacacggc ggacgtctac gtcctcgacg ccaacggccg gctgcgcggg cacttcccgt
     1561 tcggcaccga ggccccggcg atgaccgaga cgctgcgcga ggtcgtggcg acgacctcgg
     1621 tggccgtcgc gagcccaacg gcccccccgc cgacggcgcc cgccgcgacc gcggtggcgt
     1681 cggccacgcc gggctcgccg tcggcgcttg gcgtcaccgt cgtctcgtcg gccgtgtggg
     1741 cgggaagctc gacgcccgtc atcctgaccc tcgacaacgg cggcacgccg ctcgatgacc
     1801 ccggcctggc gccctccgtc cagctccaga acgcgctcgg ggcg
//
LOCUS       DATDDI010000743         1595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_681687, whole genome shotgun sequence.
ACCESSION   DATDDI010000743 DATDDI010000000
VERSION     DATDDI010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681687"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VIU37_10795"
     CDS             complement(<1..225)
                     /locus_tag="VIU37_10795"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6014490.1"
                     /translation="MPGDPAARHRDRREATRRTLLDAAMRVFSAKGVAATSVDDIVRA
                     AGLAKGTFYLYFATKDEAVDAVAAAMVERVA"
     gene            complement(324..995)
                     /locus_tag="VIU37_10800"
     CDS             complement(324..995)
                     /locus_tag="VIU37_10800"
                     /inference="COORDINATES: protein motif:HMM:NF021788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEY6014491.1"
                     /translation="MSASARAFVLRHTRLRPVTGLEEIRLHLADEVLPLWHAAQIATA
                     DPDAALPYWAFAWAGGLAVGRYLREHPEAVAGRRVFDLASGSGLCAIAAMRAGAASAI
                     AVDIDAFAVAAIELNARANGRRVTVAGRDVLDDETPDVDVVLAGDCWYEAGLAERVLP
                     WLRRARARGIDVLVGDPGRRYLPTDQLVELAAYEVRTTTELEDLALKQGHVYTLPPEG
                     QAIGG"
     gene            complement(1082..>1595)
                     /locus_tag="VIU37_10805"
     CDS             complement(1082..>1595)
                     /locus_tag="VIU37_10805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014492.1"
                     /translation="VYESMFGNTRNVALAIAEGLATKLPVETVEVGAAPTVLPPDVAV
                     LVVGGPTHAHGLSTAKSRADAAKRIQEPVISAGRGLREWLASLRPGGSLTAAAFDTRI
                     KGPVLFTGSAATSATKLLQRSRIRRVAPPRSFVLEGPTGPLVDRVPRAELDAAQAWGA
                     DLGAQVVGTA"
BASE COUNT          224 a          595 c          571 g          205 t
ORIGIN      
        1 ggccacccgc tcgaccatcg ccgcggcaac ggcgtcgacc gcctcgtcct tcgtcgcgaa
       61 atagaggtag aaggtcccct tggcgagtcc ggcggcgcgg acgatgtcgt cgaccgaggt
      121 cgccgccacg cccttggccg agaagacccg catcgccgcg tcgagcagcg tccggcgggt
      181 ggcttcgcgc cggtcacgat ggcgcgcggc aggatcgccc ggcatgctcg gtctccgata
      241 ctgactgacg gtcagtcagc atcgtaccac cggcccggtg ccctgtcacc gggcgaccac
      301 ggatcggcgc ctcgggccgc gcgctacccg ccgatcgcct gcccctccgg cggcagggtg
      361 tagacatggc cctgcttgag tgcgaggtcc tcgagctccg tcgtggtccg gacctcgtac
      421 gccgcgagct cgacgagctg atcggtgggc aggtagcgac ggcccgggtc gccgaccagg
      481 acgtcgatcc cgcgcgccct cgcccgccgg agccacggca ggacacgctc cgcgaggccg
      541 gcctcgtacc agcaatcgcc ggcgagcacc acgtcgacgt ccggagtctc gtcgtcgagg
      601 acgtcccgcc ccgcgaccgt gacccgcctg ccgttggccc gggcattgag ctcgatggcc
      661 gccacggcga aggcgtcgat gtcgaccgcg atcgccgacg cggcgccggc acgcatcgct
      721 gcgatcgcgc acagcccgga acccgaggcc aggtcgaaca cgcgccggcc ggcgacggcc
      781 tccgggtgct cgcgcaggta ccgacccacc gccaatccgc cggcccacgc gaaggcccag
      841 tacggcaggg cggcgtctgg atcggccgtg gcgatctgtg ccgcgtgcca gagcggcagc
      901 acctcgtcgg ccaggtggag acggatctcc tcgagcccgg tgaccgggcg aagacgagtg
      961 tgccggagca cgaacgcgcg ggccgatgcg ctcaacggca ggcgcccgtc tcgctcgtgc
     1021 ggcgatcggt cagcggttcc acgccgtgca gtatgcgggc gacccgggaa cgatccggcg
     1081 gtcaggccgt cccgaccact tgcgcaccga ggtcggcgcc ccacgcctgc gccgcgtcga
     1141 gctcggccct cggaacgcgg tcgacgagcg gcccggtcgg accctcgagc acgaagcttc
     1201 ggggcggcgc gacacggcgg atccgcgacc gctggagcag cttcgtggcg ctcgtcgccg
     1261 ccgatcccgt gaagagcacg gggcccttga tcctcgtgtc gaaggctgcg gcggtgagac
     1321 tgccgcccgg acgaagcgag gcgagccatt cgcgcaggcc acggccggcc gagatgaccg
     1381 gctcctggat ccgcttggcg gcgtcggccc gggacttggc tgtcgacagg ccgtgggcat
     1441 gcgtcgggcc ccccaccacc agcacggcca cgtcgggcgg aagcacggtc ggcgccgcgc
     1501 ccacctcgac ggtctcgacc ggcagcttcg tggcgaggcc ttcggcgatg gccagggcca
     1561 cgttcctcgt gttgccgaac atcgactcgt agacg
//
LOCUS       DATDDI010000744         1980 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_78653, whole genome shotgun sequence.
ACCESSION   DATDDI010000744 DATDDI010000000
VERSION     DATDDI010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78653"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..413
                     /locus_tag="VIU37_10810"
     CDS             99..413
                     /locus_tag="VIU37_10810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014493.1"
                     /translation="MEIAISLELGGAALLIVAAIVFGAVAQFIGETRTGFEWLVDAIA
                     FGIGALVASEFITSWRTFEPVWNGLAIVPALIGGLVVGIVIELATRFSTGGTYTHHPT
                     PA"
     gene            656..967
                     /locus_tag="VIU37_10815"
     CDS             656..967
                     /locus_tag="VIU37_10815"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY6014494.1"
                     /translation="MRSPVPSLALEVDFLQRSVRVDGMPVDLSAIEFGILAALAREPG
                     AIVTREALLDLVFGPGFVDDRDLVDIRVADLREKLGDDSDDQHLVETVGTLGYRLADI
                     G"
     gene            complement(1001..1495)
                     /locus_tag="VIU37_10820"
     CDS             complement(1001..1495)
                     /locus_tag="VIU37_10820"
                     /inference="COORDINATES: protein motif:HMM:NF012481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HEY6014495.1"
                     /translation="MQAVVVFDTQFGNTEQVARAIAEGIAPSGTVDVLAATAALGRPQ
                     VPPDLLLIGGPTQRHGMSPTLRAYVESLPRDGLRNTRVAAFDTRYRMPPLLSGSAAKE
                     VATRLRRTGFRLVAAPESFFIERDRPPDGEKRRHGSEQLEPGELERAREWGRRLATLP
                     VVTF"
     gene            complement(1632..>1980)
                     /locus_tag="VIU37_10825"
     CDS             complement(1632..>1980)
                     /locus_tag="VIU37_10825"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014496.1"
                     /translation="VGVEAVVDKDLAAVVLADSVDADALLLLTDVEAAEFGWGAPDRI
                     SIRRLTLQDAATGVADGTFAPGSMGPKVRAAAEFVRRTGKVAAIGALDDAVGVLEGRS
                     GTTLIEQPLVAVW"
BASE COUNT          259 a          739 c          679 g          303 t
ORIGIN      
        1 ccgatcgggc cgcttggcac ttccgcagcg cccctccccg agtcaccatc aggattggcg
       61 gcgtctgtgc cggcgccccc ggataggagg gcaggttgat ggagatcgcc atctcgctcg
      121 aactcggcgg tgcagcgcta ctcatcgtcg cagcgatcgt ctttggggcc gttgcccagt
      181 tcatcggtga gactcgcaca ggattcgagt ggctggtcga cgcgatcgcg ttcggcatcg
      241 gggcgctcgt ggccagcgag ttcatcacca gttggcgcac gttcgagccc gtctggaacg
      301 ggctcgcgat cgtgcccgcg ctcatcggcg gcctcgtcgt cggcatcgtg atcgagctgg
      361 cgacccggtt ctcgactggt gggacctaca cccaccatcc gacacccgcc tgagcgttcg
      421 tcgtccgctg cggacaaccg acccgccggt ggcacagccg gcgggtcgtc cgtcatccgc
      481 acggaacctg gcttcgggtc tcgcggccgc catcgtcagg tcgggccgct cggcccgccg
      541 gaagctgacc ttcggcccac gcggcgttcg ccgccggtcc gcagccttgg ggcatgtccg
      601 ctgaggcctg cccgtccggc gcgtccgctg ccgccggacg gttcggccgg acgcgatgag
      661 atccccggtt ccgtcactcg cgctcgaagt cgacttcctg cagcggagtg tccgcgtcga
      721 tggcatgccg gtcgacctca gcgcgatcga gttcgggatc ctcgcggcac tcgcgcgcga
      781 gccgggtgcc atcgtcaccc gcgaggcgtt gctcgatctc gtcttcgggc cgggcttcgt
      841 cgatgaccgc gacctggtgg acatccgggt cgccgatctc cgggagaagc tcggcgacga
      901 ttcggacgat cagcacctcg tcgagacggt gggcacgctc ggctaccggc tcgcggacat
      961 cggctgagcc gcccctcggg aggcagcccg ggccgttgtc ctagaaggtc acgaccggca
     1021 gcgtcgcgag gcgacgcccc cactccctgg cccgctcgag ctcgccgggt tcgagctgct
     1081 ccgacccgtg tcgccgcttc tccccgtccg gcgggcggtc gcgctcgatg aagaagctct
     1141 ccggcgccgc cacgagccgg aagcccgtcc gacgtagtcg cgtggcgacc tccttggccg
     1201 ccgatcccga cagcagcggc ggcatccggt agcgggtgtc gaaggcggcc acgcgcgtgt
     1261 tgcgcagccc gtccctcggg agcgactcga cgtacgcccg cagggtcggg ctcatcccgt
     1321 gccgctgggt cggcccgccg atcaacagga gatccggcgg cacctgcggc cggccgagcg
     1381 cggcggtcgc cgcgagcacg tccaccgtgc cgctgggggc gatcccctcg gcgatggcgc
     1441 gggcgacctg ctcggtgttg ccgaattgcg tgtcaaagac gacgacggcc tgcatcacgg
     1501 gcctcctcgc gatcgcaacc gacggccggc cagcgggccg ggccgcctcg aatgcatcgt
     1561 cgttccgagc ccgcgccgcg ggccagtgcc gttcggatca atcctccccg ggtgacgagc
     1621 cctcgcggga cctaccagac ggcgaccagc ggctgctcga tcagggtggt cccggaccgg
     1681 ccctccagga cgcccacggc atcgtccagc gcgccgatcg ccgcgacctt gccggtccgg
     1741 cggacgaact cggccgccgc ccggaccttg gggcccatcg aacccggggc aaacgtgccg
     1801 tcggctactc ccgtcgccgc atcctgcaag gtcagccggc ggatcgagat ccgatccggg
     1861 gcaccccagc cgaactcggc cgcttcgacg tccgtcagca gcaggagcgc gtcggcatcg
     1921 acactgtccg cgaggacgac cgcggcgagg tccttgtcca cgacggcctc gacgccgacc
//
LOCUS       DATDDI010000745         1748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_119799, whole genome shotgun sequence.
ACCESSION   DATDDI010000745 DATDDI010000000
VERSION     DATDDI010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119799"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..1104)
                     /gene="trpD"
                     /locus_tag="VIU37_10830"
     CDS             complement(55..1104)
                     /gene="trpD"
                     /locus_tag="VIU37_10830"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEY6014497.1"
                     /translation="MSDQVRAALATIVDGGTLSMDDAHAAMGAVMDGEATPAQLAAML
                     MGLRMRGETVDELAGFALAMRERVLRVEAPADAIDVVGTGGDGSGTFNISTTAALVAA
                     AAGVPVAKHGNRAMTSRSGSADVLDALGVRIDHDAESAGRALREIGFAFLFAQNFHPA
                     MKYAGPTRREIGVRTAFNLLGPLTNPAGTRRQLLGVGDAGLAARMAEVVSRLGTERTF
                     VIHGDGVDELPLDGSGVAYVVTGDTVERHVIDAAALGFRRVATARLAGGTPAENARMT
                     EAVLHGEPGTHRDVVLLNAGAALLVAGVVGQMEEGIERAALTIDAGLGVELLATLRAE
                     RTAAQATAGATGAPA"
     gene            complement(1101..>1748)
                     /locus_tag="VIU37_10835"
     CDS             complement(1101..>1748)
                     /locus_tag="VIU37_10835"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEY6014498.1"
                     /translation="FNLVQALEAAGAEVRVVRNDAMDGAAIRELADEPASDLRGIVIS
                     PGPGDPDHAGVSVESVRVAAERGIPLLGVCLGMQSMAVAFGASIVRAPTLVHGEASEV
                     SHDGAGLLEGMPPAFMAARYHSLAVDPATLPVELRVTAISEVDRVVMGLRHVTLPLEG
                     VQFHPESVLTPQGPHLLANFLRLAGEGEASRLDDASGSFATAGMAETGLSAGAVR"
BASE COUNT          231 a          663 c          628 g          226 t
ORIGIN      
        1 cgtgccggcc ggcggccggc ggtcgggaaa cgcgcgttcg cggagccacg gcgctcatgc
       61 gggcgctccc gtcgccccgg ccgtggcctg ggcggccgtt cgctccgcgc ggagcgtcgc
      121 gagcagctcg accccgagac cggcgtcgat cgtcagcgcc gcgcgttcga tcccctcctc
      181 catctgcccc acgacgcccg ccacgagcag cgccgcgccg gcattgagca ggacgacgtc
      241 acgatgcgtg ccgggctctc cgtggaggac ggcctcggtc atccgggcgt tctccgcggg
      301 cgtgcccccc gccagccgcg ccgtcgcgac gcgccggaac ccgagggcgg cagcgtcgat
      361 cacgtgccgc tcgaccgtgt cgccggtcac gacgtacgcg acgccactgc cgtcgagcgg
      421 cagctcgtcg acgccgtcac cgtggatgac gaacgttcgc tccgtgccga ggcgggatac
      481 cacctcggcc atccgggccg ccagccctgc atcgccgact ccgagcagct gacgccgcgt
      541 cccggcgggg ttcgtcagcg ggccgagcag gttgaatgcc gttcgcacgc cgatctcccg
      601 gcgcgtgggt cccgcgtact tcatggccgg gtggaagttc tgcgcgaaca ggaacgcgaa
      661 gccgatctcg cggagggccc ggcccgccga ttccgcgtcg tggtcgatcc ggaccccgag
      721 cgcgtcgagc acgtcggccg agcccgaccg cgaggtcatc gcccggttgc cgtgcttcgc
      781 gacggggacg ccggccgccg ccgcgaccaa tgccgccgtg gtcgagatgt tgaaggtccc
      841 gctgccgtca ccgcccgtcc ccacgacgtc gatcgcgtcg gcgggcgcct ccaccctgag
      901 gacgcgctcg cgcatcgcca gcgcgaagcc ggcgagctcg tcgacggtct cgccgcgcat
      961 ccgcaggccc atgagcatgg cggccagctg ggccggcgtg gcctcgccgt ccatgaccgc
     1021 gcccattgcc gcatgggcgt cgtccatcga cagcgtgccg ccgtccacga tcgtggccag
     1081 ggcggctcga acctggtcgc tcatcgaacc gctcccgcgg agagcccggt ctcggccatg
     1141 ccggccgtcg cgaacgagcc gctcgcgtcg tcgaggcggg aggcctcgcc ctcgccggcg
     1201 aggcgcagga agttcgcaag gaggtgcggg ccctgcggtg tcaggaccga ttcgggatgg
     1261 aactggacgc cctcgagggg cagtgtcacg tgccggaggc ccatcaccac gcggtcgacc
     1321 tcgctgatcg cggtgacgcg cagctcgacc ggaagtgtgg ccggatccac ggccagcgag
     1381 tggtagcggg cggccatgaa cgccggcggc atcccttcga gcagtcccgc gccgtcgtgg
     1441 ctcacctcgg acgcttcgcc gtggacgagc gtgggagcgc gcacgatcga cgccccgaac
     1501 gccacggcca tcgactgcat cccgaggcag acaccgagca gcgggatccc gcgctcggcg
     1561 gcgacccgga cgctctcgac cgagacgccg gcatgatccg gatcgcccgg gccgggcgag
     1621 atcacgatcc cgcgcaggtc cgaggccggc tcgtccgcca gctcgcggat ggcggcgccg
     1681 tccatggcgt cgttgcggac gacgcggacc tcggcaccgg cggcctcgag ggcctggacc
     1741 aggttgaa
//
LOCUS       DATDDI010000746         1700 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_119801, whole genome shotgun sequence.
ACCESSION   DATDDI010000746 DATDDI010000000
VERSION     DATDDI010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119801"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..960
                     /locus_tag="VIU37_10840"
     CDS             <1..960
                     /locus_tag="VIU37_10840"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing sensor histidine kinase"
                     /protein_id="HEY6014499.1"
                     /translation="QRERIGQLPRGHGLLGLIIREGRAFRIRDISAHPDSSGFPPHHP
                     PMHSFLGVPVTVKGVSVGNLYLTDKIDAEEFSEDDQALVEMFALHAGIAIENARLHEQ
                     IQRLAIVEERERIAKDLHDGVIQSIYAVGLSLEDLPEVMQEDSGEARVRIDRAIDALH
                     MTIRDIRNFIMGLRPELLDQHDLVGSLLALAEGVRLNSMVEIETSIDATAAAALPEHA
                     RAPAFHITREALSNVVRHSHATRASIILRREGPAVRLEINDNGTGFDPGEERESTHQG
                     LTNMAGRAGRHGGNLRVESAAGAGTRIIVTLEAVDRPPEQEIR"
     gene            957..1631
                     /locus_tag="VIU37_10845"
     CDS             957..1631
                     /locus_tag="VIU37_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014500.1"
                     /translation="MTGETVARPLRLLVVDDHEVVRQGLVALLDRRQGFEVVAEAGTA
                     AEAVEQARRYEPDIVVMDVRLPDGSGVEACREIRAERAATRVVMLTSYPDEEAVLSAI
                     VAGASGYLLKQVRARDLVAALEAVGRGESLLDPAVTEKVLERVRRIATGAAADDLAAL
                     TTQEQKILLLVAEGKTNKEIAAEVFLSDKTVKNYVSSILSKLNLERRAQAAAYMARLR
                     GTGTGS"
BASE COUNT          284 a          580 c          600 g          236 t
ORIGIN      
        1 cagcgggaga ggatcggcca gctgcctcgg ggtcacggcc tcctcgggct gatcatccgc
       61 gagggccggg cgttccggat ccgcgacatc tcggcgcacc ccgacagctc cggcttcccg
      121 ccgcaccatc cgccgatgca ctcgttcctc ggcgtgccgg tcacggtcaa gggggtctcg
      181 gtcggcaatc tctatctgac cgacaagatc gacgcggagg agttctccga ggacgaccag
      241 gcgctcgtcg agatgttcgc gctccacgcc gggatcgcga tcgagaacgc gaggctccac
      301 gaacaaatcc agcgcctggc gatcgtcgag gagcgcgaac ggatcgccaa ggatctccac
      361 gacggggtga tccagagcat ctatgcggtg gggctctcgc tcgaggacct gccggaggtg
      421 atgcaggagg actcgggcga ggcacgggtc cggatcgatc gtgcgatcga cgccctgcac
      481 atgacgatcc gggacatccg caacttcatc atgggcctgc gccccgagct gctcgaccag
      541 cacgacctgg tcggctcgct gctcgcgctg gcggaggggg tccggctcaa ctcgatggtc
      601 gagatcgaga cgtcgatcga cgccacggcc gctgccgcgc tccccgagca cgctcgcgcg
      661 cccgccttcc atatcacgcg ggaggcgctg tccaacgtcg tccggcactc gcacgccact
      721 cgcgcgtcga tcatccttcg ccgcgaaggg ccggccgtgc ggcttgagat caatgacaac
      781 ggcacgggat tcgacccggg cgaggagcgc gaatccacgc accaggggct gaccaacatg
      841 gccggacggg cggggcgtca cggcggcaat ctgcgagtgg agagtgccgc tggcgccggg
      901 acccgtatta tcgtcacact cgaggcggta gatcgcccac ccgaacagga gatcagatga
      961 ccggcgaaac ggtggcccga ccgctgcgcc tgctcgtcgt ggacgaccac gaagtcgtac
     1021 ggcagggact cgtcgcactc ctcgaccggc gccaggggtt cgaagtcgtc gccgaggccg
     1081 ggacggccgc cgaggccgtc gaacaggctc gccggtacga acccgacatc gtggtgatgg
     1141 acgtccggct gcccgacggc tcgggcgtcg aggcctgccg cgagatccgc gcggagcgtg
     1201 ccgcgacccg cgtcgtgatg ctcacctcgt acccggacga ggaggcggtg ctgtcggcca
     1261 tcgtggcggg cgccagtggc tacctcctca agcaggtccg ggcgcgtgac ctggttgccg
     1321 ccctggaggc cgtcggacgc ggcgaatcgc tgctcgaccc ggcggtgacc gagaaggtcc
     1381 tcgagcgggt ccgccggatc gcgacgggtg ccgcggccga cgacctcgcg gcgctgacca
     1441 cccaggagca gaagatcctg ctgctggtcg ccgagggcaa gacgaacaag gagatcgcgg
     1501 cggaggtctt cctgtcggac aagaccgtca agaactacgt cagctcgatc ctgtccaagc
     1561 tcaacctgga gcgccgcgcg caggcggccg cgtacatggc gcggttgcgc gggacgggca
     1621 ccggcagcta ggtcgcgggc cggtcaggcc aggtcggacg gctgccagtg ataccagctg
     1681 accgccgcga gcacgcccag
//
LOCUS       DATDDI010000747         4308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_723352, whole genome shotgun sequence.
ACCESSION   DATDDI010000747 DATDDI010000000
VERSION     DATDDI010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_723352"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VIU37_10850"
     CDS             <1..959
                     /locus_tag="VIU37_10850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014501.1"
                     /translation="GMTEQYLRNLDSDPMSNTGYQFSQDRMAWAYRTFLKEQPDVLRA
                     KLKGLQAEDPAMMSRFLDQLAIHDPQIADMRKVLGDDPAKYLNELDKWHQKMLDAASM
                     DETVAIIDETLQQAYRDSPDLAAVYARLGDANKELWDNVRQTFYGNPNRSRAERFLNS
                     YLLFWPLSYQIKSTKWFMSMLFDRMGGMPTNAGGAFLFDKLAQTHQQLLATDPTYQDW
                     FEKHPTAVFLAQMLFPVSFEGTGVSLNPAMRSLFFGRAKAIWDIGPVYTFNHVLKPLG
                     KELYADLYPTLKDVPGFDGIYRATTGQQQPAAPKLDAATLGQ"
     gene            1063..1686
                     /locus_tag="VIU37_10855"
     CDS             1063..1686
                     /locus_tag="VIU37_10855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014502.1"
                     /translation="MAGNDQDPLDDEQDPNADNPDDAAEDQAEAANQPGSDLEQRLLL
                     AEQRLAQQASELDLFRRGSQASEPVDDGAGDDGQDDLLARATQDSWALAERIHGEEAV
                     DAYRVAWDLIERATTPADYVTAFEAYHQVRLGKNVDGSEPAKGSGKPDRAAALQPRVD
                     ANQSDAGPDLQDADKKLSEARKGKDLGAFVAAATTRLGFGPVPGSRS"
     gene            1719..2858
                     /locus_tag="VIU37_10860"
     CDS             1719..2858
                     /locus_tag="VIU37_10860"
                     /inference="COORDINATES: protein motif:HMM:NF036552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5309 family protein"
                     /protein_id="HEY6014503.1"
                     /translation="MAVVTGARYGFTDTANVAIDMSDTLGMISPYDVPLLQLIGKDSL
                     KSPCVATKHEWLEDVLRPLDTAIATQGEFSGTGAVSTATVTAGQGVYLRAGDILLIES
                     ELVKLDSISTDTLTISAGSRGYGGSTAAAHASLTAIKIVGNVNVQDAAQGASRSTTKT
                     GLYNYTQIYEDTIVVTSTAQAIKKWVEQNEMSAQLMRALRIAWINWERALLYGRKVAP
                     SAGVASAMDGILVRISTNTYAKAGATLTEEYILQMLNDSWVQGGAIDTLVVNAFQKRQ
                     MNKFLDSQRMTTRTDRVAGVIVDTYTSDFGTADILLDRNMPTDTVLGIQKDRIGFGPL
                     RDHVLSAAPVETSTRLKDAVQIIGQYTSETRNEAAHGKITGLATS"
     gene            2920..3336
                     /locus_tag="VIU37_10865"
     CDS             2920..3336
                     /locus_tag="VIU37_10865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014504.1"
                     /translation="MPRSAPYGFARDLVSLTVVFPAGTGQVTSLLSLPLGFTGTIEKV
                     SIFASVVAAGAGASRTLNIRKGTATGTVVATATVVLADLNAIGAVKDIPVTAANADFV
                     DTDTLTIEWAAAGAVAFTAGTFHVVIRSRQRLQRVA"
     gene            3723..4076
                     /locus_tag="VIU37_10870"
     CDS             3723..4076
                     /locus_tag="VIU37_10870"
                     /inference="COORDINATES: protein motif:HMM:NF024280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEY6014505.1"
                     /translation="MAIVTAYCHEAHGLKLGPGTGQVDIPGQLIVFRDGYATFDTADY
                     PDFERWLVGAPPIRILDSAEGEVAADDAEFKCPVCGKGFKTEKQLNGHLMSHKPKEPK
                     APAAPKDKPPAEPKK"
     gene            4081..>4308
                     /locus_tag="VIU37_10875"
     CDS             4081..>4308
                     /locus_tag="VIU37_10875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014506.1"
                     /translation="MATLAQLRAKLNGEIGVVTDTEPSPWSQTVRNNAIMDGYAELWR
                     AGVWKAVIETPASVTDQSIYALTSIRRLERLE"
BASE COUNT          790 a         1535 c         1399 g          584 t
ORIGIN      
        1 tcgggatgac cgagcagtac ctccgcaatc tcgactcgga cccgatgagc aacaccggct
       61 accagttcag tcaggaccgg atggcgtggg cctatcggac cttcctcaag gagcagccgg
      121 acgtgctgcg cgccaagctc aagggcctcc aggccgagga cccggcgatg atgtcgcgct
      181 tcctcgacca gctcgcgatc cacgatccgc agatcgccga catgcggaag gtgctcggcg
      241 acgacccggc gaagtacctg aacgagctcg acaagtggca ccagaagatg ctcgacgcgg
      301 cctcgatgga cgagacggtg gcgatcatcg acgagacgct ccagcaggcg taccgcgact
      361 cgccggacct cgccgcggtg tacgcgcggc tcggcgacgc gaacaaggag ctgtgggaca
      421 acgtccgcca gacgttctac ggcaatccga accggtcgcg ggcggagcgg ttcctcaata
      481 gctacctgct tttctggccg ctcagctacc agatcaagtc gaccaagtgg ttcatgtcga
      541 tgctgttcga ccggatgggc gggatgccga ccaacgccgg cggcgccttc ctgttcgaca
      601 agctcgccca gacgcatcag cagctcctcg ccactgatcc gacctaccag gactggttcg
      661 agaagcaccc gacggccgtg ttcctcgcgc agatgctgtt cccggttagc ttcgagggga
      721 ccggcgtgag cctgaacccg gccatgcgct cgctgttctt cggccgggcg aaggcgatct
      781 gggacatcgg gcccgtctac accttcaacc acgtcctcaa gccgctcggc aaggagctct
      841 acgcggacct ctacccgacg ctcaaggacg tgcccggctt cgacgggatc taccgtgcca
      901 cgaccggcca gcagcagccg gcggcgccca agctggacgc ggcgacgctc ggccagtagt
      961 cccccagctc gggcgtattg acaaatgatg tgcgccgggg cgtatgctgc atagcgagac
     1021 agcgagcgac cgcctcgctg gacacgaaaa agaaggggct acatggcagg caacgaccag
     1081 gaccccctcg acgacgagca ggatcccaac gcggacaacc ctgacgacgc agccgaggac
     1141 caggcagagg ccgcaaacca gccaggctcc gatctggagc agcgtctcct tctcgccgaa
     1201 cagagactgg cgcagcaggc ctcggagctc gaccttttcc gaagggggag ccaggccagc
     1261 gagccggtcg acgacggcgc aggggacgac gggcaggatg accttctcgc acgcgctacc
     1321 caggactctt gggcgctcgc agagaggatc cacggcgagg aggcggtcga cgcctaccga
     1381 gtcgcgtggg acctgatcga gcgggcgacg acgccggcgg actacgtgac ggccttcgag
     1441 gcgtatcacc aggtccgcct cggaaagaac gtggacggct ccgagccggc gaagggctcg
     1501 ggcaagccgg accgcgcggc ggcgctccag ccgcgagtcg atgccaacca gtcggacgcc
     1561 ggccctgacc tccaagacgc agacaagaag ctgtcggagg ccaggaaggg gaaggacctc
     1621 ggagcgttcg tcgcagcggc gacgacgcgg ctcggtttcg gaccggttcc gggatcccga
     1681 agctaaccgg cctccctcgg taagagggag actcgaacat ggctgttgtc acgggcgcgc
     1741 ggtacgggtt caccgacacc gcgaacgtcg ccatcgacat gagcgacacg ctggggatga
     1801 tctccccgta tgacgtgccg ctgctccagt tgatcggcaa ggactcgctc aagtccccgt
     1861 gcgtcgcgac gaagcacgag tggctcgagg atgtcctgcg gccgctcgac accgcgatcg
     1921 ccacgcaggg cgagttctcc ggcaccggcg cggtttcgac cgcgacggtc accgccggcc
     1981 agggcgtgta cctgcgcgcc ggcgacatcc tcctgatcga gtcggagctc gtcaagctcg
     2041 actcgatctc caccgacacc ctcacgatca gcgccggctc gcgcggctac ggcgggtcca
     2101 ccgccgcggc acacgcctcg ctgacggcca tcaagatcgt cggcaacgtc aacgtccagg
     2161 acgccgccca gggcgcgtcg cggtcgacga ccaagaccgg cctctacaac tacacgcaga
     2221 tctacgagga cacgatcgtt gtgacctcga cggcccaggc gatcaagaag tgggtcgagc
     2281 agaacgaaat gagcgcccag ctcatgcgcg ctctgcggat cgcgtggatc aattgggagc
     2341 gcgcgctcct gtacggccgg aaggtcgcgc cgagcgccgg cgtcgcgtcg gcgatggacg
     2401 gcatcctcgt tcggatcagc accaacacct acgccaaggc cggcgcgacg ctgacggagg
     2461 agtacatcct ccagatgctg aacgactcct gggtgcaggg cggcgcgatc gacacgctcg
     2521 tcgtcaacgc cttccagaag cgccagatga acaagttcct cgacagccag cggatgacca
     2581 cgcggaccga ccgcgtcgcc ggcgtgatcg tggacacgta caccagcgac ttcgggacgg
     2641 ccgacatcct gctcgatcgc aacatgccga cggacaccgt cctcggcatc cagaaggacc
     2701 gcatcgggtt cggcccgctg cgcgaccacg tcctctcggc ggctcccgtc gagacgagca
     2761 cccggctcaa ggacgcggtg cagatcatcg ggcagtacac gtccgagacg cggaacgagg
     2821 ctgcccacgg caagatcaca ggacttgcca ccagctaacc cctgagcggg aggtccggtt
     2881 tcgggcccgg gcctcccgtc tcctcaccag gagacgctca tgcctcgctc cgctccctac
     2941 gggttcgccc gtgatctcgt ctcgctcacc gtcgtgttcc cggccggcac gggccaggtg
     3001 acttcgctcc tctcgctccc gctcgggttc accgggacga tcgagaaggt gtcgatcttc
     3061 gcctcggtcg tggcggcggg cgccggcgcc agccgcacgc tcaacatccg caagggcacg
     3121 gccaccggga ccgtcgtggc gacggcgacc gtggtcctcg cggacctcaa cgcgatcggc
     3181 gccgtcaagg acatccccgt gaccgcggcc aacgccgact tcgtggatac cgacacgctc
     3241 acgatcgagt gggcggccgc cggcgccgtg gccttcaccg cgggcacgtt ccacgtcgtc
     3301 atccggtcgc gccagcgcct gcagcgggtc gcgtaatggg cgccccggca ggcaaggcgg
     3361 cccgtgcgcg cctcggcgcc gcggtcaagc ccgtgtccac gacggccacc ccctcgccgc
     3421 gcgccctcga gcgcgccaat cccaacgcct ccttcaagcg cggcgcggcg cgaccgatgg
     3481 cacccggcca gcggtcgacc cagccgctga ccgtcgcgcc agccttcaag ccgaccgcac
     3541 cgacggcaca gcgacccatg ccggccgctc ggtccgcgcc agcgcagcaa cggagtttcc
     3601 tgccgaagcc accggccaag gccagcaagc cggtcctccg gcgatgacgg gtggggcgcc
     3661 gggcggtcag gtcggcgccc catcacccct cgaacgcgac tgacccgcgt aaggagatcc
     3721 gaatggcgat cgtcacggcc tactgccacg aggcacacgg cctcaagctc ggacccggca
     3781 cgggccaggt cgacatcccc ggccagctca tcgtgttccg cgatggctat gccaccttcg
     3841 acacggccga ctacccggac ttcgagcgat ggctcgtcgg agctccgccc atccgcatcc
     3901 tcgactccgc cgagggtgag gtcgcggccg acgatgccga gttcaagtgc ccggtctgcg
     3961 gcaagggttt caagaccgag aagcagctca acgggcacct gatgtcgcac aagccgaagg
     4021 agccgaaggc cccggccgcg ccgaaggaca agccgccggc cgagcccaag aagtagccgc
     4081 atggctacgc tcgcccagct ccgcgcgaag ctcaacgggg agatcggggt cgtcaccgac
     4141 accgagccga gcccgtggtc acagaccgtc cgcaacaacg cgatcatgga cggctacgcg
     4201 gagctgtggc gggcgggcgt gtggaaggcg gtcatcgaga ctccggcctc cgtgaccgac
     4261 caatccatct acgccctcac gagcatccgg cgcctcgagc gcctcgag
//
LOCUS       DATDDI010000748         3937 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_328023, whole genome shotgun sequence.
ACCESSION   DATDDI010000748 DATDDI010000000
VERSION     DATDDI010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3937
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328023"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VIU37_10880"
     CDS             complement(<1..512)
                     /locus_tag="VIU37_10880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014507.1"
                     /translation="MEPAAPDDLGELEEPEVEADRPESHGSQPPAVLGLLPATAWLLA
                     LLAFARLAWGLREVAFASPIDPGLIGQVLLFELPSVISILLAAALLARHPDAGSRMRM
                     LLGGMAVLAMVEGLRVLASPLQPVFEWLTPGDPGVPFLVPAALLYQVGSNVLNAAAVG
                     AIGPGSGGGIV"
     gene            complement(544..1854)
                     /locus_tag="VIU37_10885"
     CDS             complement(544..1854)
                     /locus_tag="VIU37_10885"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6014508.1"
                     /translation="MAASSPVVPVPAATVVLLRGGRAGLEVLLTRRPASMAFAPDMHV
                     FPGGRVDAADAAPGLARRSVVSPGQAAIALGGDLEPAAALAAHVAAIRELFEEAGVLL
                     ADGGRDGTPLPARTVSEARSALVGGDAGFESIAIELDLRLRTDLLVPLSRWVTPPTLP
                     RRFDARFFGAELPPGARVSFEGDEVAGHRWLTPAAGLAAMAAGEIGMWLPTSATLQQL
                     EHVTSIEEARRRLAPGRLGAIDVAPVSLDVTRIVMPAGGGVAGQPVCAYLVGRRSHVL
                     VDPGDPTGPALEEAIALAAARAGSIVGIALTQVDPDHAAGTEALAGILGVPVVAGIGG
                     GRPLPYPIGELADGEIVPFGDVPLRAVAAPGPGPSHLAYLVGDAGGLAISGDLDGRRG
                     ARTVLGPWSEDDAVASRDRLRRLAPAATWLPGHPPPAVEPAGLG"
     gene            complement(1856..2395)
                     /locus_tag="VIU37_10890"
     CDS             complement(1856..2395)
                     /locus_tag="VIU37_10890"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014509.1"
                     /translation="MPPEADETTRATGLIVRPAEPPEYGAIGELTVRAYATLRDPLRG
                     GPVYAAYEQELRDVAGRAGTCEVLVAVDRAGRPVGAVTYVPGPGTPWSETELEGEAGF
                     RALAVDPGVRGRGAGRALATACVERARADGRHGVAILTRPSMTAAHRLYESLGFVRAP
                     ARDWEFEPGEWLWSYVLTF"
     gene            complement(2385..>3937)
                     /locus_tag="VIU37_10895"
     CDS             complement(2385..>3937)
                     /locus_tag="VIU37_10895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014510.1"
                     /translation="PPARPDLVEAAVALVVRSFDQGTGGWGGVPKFPQPMTIEFLLRR
                     VADSRDPAALAVARRALEAMADGGIHDQLGGGFHRYATDARWLVPHFEQMLYDNAQLA
                     RTYLHAWQTCDDEAYLDVATGTLDYMVRELTTDDGAFAASQDADTDGEEGATFVWTAD
                     EVRATLGERSPLFEAAYGVTEAGNWEGRTILSRVAADGELAGRFGLPEAEVREQLADA
                     RRAMLAHRDTRPQPARDGKALAAWNGLAIGALADAAAALATGRPDHAARYRMAAERAA
                     GTILDGLLAPDGSLGRSWKDGRATGHGVLEDHTHLADGLLALYAATFDERWFVAARAL
                     MDRVLERFADPAGGFFDTADDHERLVTRPKDVQDNAVPSGNAVAAEVLLRLHAWTGAS
                     VYRSAADRALRTVVPYVTRYATGFARWLSAMDLSLAAVQEVAIVGAAGDPATLALLAE
                     ARRGYGPNRVVSMAADAAASAIPLLADRLAIDGRPTAYVCRGFVCRLPATDPESLRRQ
                     LEEAAGAA"
BASE COUNT          545 a         1509 c         1458 g          425 t
ORIGIN      
        1 acgatcccac cgcctgaccc tggtccgatg gcgccgacag cggccgcgtt cagcacgttg
       61 ctgccgacct ggtagaggag cgccgccggg acgaggaagg gcacgcccgg gtcgcccggc
      121 gtcagccatt cgaagaccgg ctgcaggggc gaggcaagga cgcgcagacc ctcgaccatc
      181 gccaggacgg ccatcccgcc caggagcatc cgcatccgcg agcccgcgtc cggatggcgg
      241 gccagcaggg ccgctgccag caggatcgag atgacggacg gcagctcgaa caggaggacc
      301 tggccgatca gccccgggtc gatcggcgag gcgaacgcca cttcgcgcag gccccacgcg
      361 agccgggcga acgcgaggag tgcgaggagc caggccgtgg ccgggaggag gccaaggacg
      421 gccggcggtt gcgagccgtg cgactccggc cggtccgcct cgacctccgg ctcctcgagc
      481 tcaccgaggt cgtccggcgc ggcaggctcc atcggaccag ggtcaggcgg tgggatcgtc
      541 acgtcaaccc aagcccgccg gctcgaccgc gggcggcggg tggccgggca gccacgtcgc
      601 cgccggagcc agccggcgca gccggtcgcg ggaggcgacg gcgtcgtcct cgctccacgg
      661 cccgaggacg gtccgcgctc cgcgccgccc gtccaggtcg ccgctgatcg ccagcccgcc
      721 cgcgtcgccg acgaggtatg ccaggtgcga gggtccgggt cccggcgcgg cgaccgcccg
      781 gagcggaaca tcgccgaacg gcacgatctc cccgtcggcg agctccccga tcgggtacgg
      841 gagcggccga ccgccgccaa tgccggccac gaccgggaca ccaaggatcc cggccagcgc
      901 ctcggtcccg gccgcgtggt ccgggtcgac ctgggtcagc gcgatcccga cgatcgaacc
      961 ggcgcgagcg gccgccaggg cgatcgcctc ctccaacgcc ggaccggtcg ggtcacccgg
     1021 gtcgacgagg acatgcgacc ggcgcccgac caggtaggcg cacacgggtt ggccggccac
     1081 gccgccgccg gccggcatga cgattcgggt cacgtccagc gagaccggcg ccacgtcgat
     1141 cgccccgagc cgcccgggcg ccagacgccg gcgggcttcc tcgatcgacg tcacgtgctc
     1201 gagctgctgg agggtcgcgc tcgtcgggag ccacatgccg atctcgcccg cggccatcgc
     1261 cgccagaccg gcggccggcg tgagccagcg atgaccggcg acctcgtcgc cctcgaacga
     1321 gacccgtgcg ccggggggca gctcggcgcc gaagaaccgc gcatcgaagc gccggggcag
     1381 ggtcggcggc gtgacccagc gtgagagcgg gacgagcagg tccgtgcgca ggcgcaggtc
     1441 aagctcgatg gcgatcgatt cgaacccggc atcgccaccg accagcgccg accgcgcctc
     1501 cgagaccgtt cgagccggca gcggcgtccc gtccctgccg ccatcggcga gcaggacgcc
     1561 ggcctcctcg aacagctcgc ggatcgccgc cacgtgcgcc gccagcgccg cagccggctc
     1621 gagatcgcca ccgagcgcga tggcggcctg tcccggcgag acgaccgacc ggcgggccag
     1681 gccgggcgcc gcatccgcgg catccacccg gccgccgggg aagacgtgca tgtccggtgc
     1741 aaaggccatg gaggcaggcc gtcgcgtcag cagcacctcg agccccgccc gcccgccacg
     1801 gagcaggacg accgtcgcgg ccggcacggg gaccaccggc gaggacgcgg ccacgtcaga
     1861 aggtcaggac gtaggaccag agccactcgc caggctcgaa ctcccagtcc cgagccggcg
     1921 cgcgaacgaa cccgagcgat tcgtacagcc gatgggcggc ggtcatcgac ggccgggtca
     1981 ggatggcgac gccgtgccga ccgtccgcgc gcgcgcgctc gacgcacgcg gtcgcgagcg
     2041 cccgtcccgc gccgcgaccg cgcaccccgg ggtccaccgc cagcgcgcgg aagccggctt
     2101 cgccctcgag ctccgtctcg gaccagggcg tcccagggcc cggcacgtag gtcaccgcgc
     2161 cgaccgggcg cccggcccgg tcgacggcca ccaggacctc gcacgtcccg gcccgcccgg
     2221 cgacgtcccg caactcctgc tcgtaggccg cgtagaccgg gccgccccgg agcgggtcgc
     2281 ggagcgtggc ataggcgcgg acggtcagct cgccgatcgc gccgtactcc ggcggttcgg
     2341 ccggccgcac gatcaggccc gtggcgcggg tcgtctcgtc ggcctcaggc ggcaccggcc
     2401 gcctcctcga gctggcggcg aagcgattcg ggatcggtgg ccggcaggcg gcagacgaac
     2461 ccacggcaga cgtaggcggt cgggcggccg tcgatcgcga gccggtccgc cagcaacggg
     2521 atcgcgctgg ccgccgcgtc cgcggccatc gacacgaccc ggttgggccc gtagccgcgg
     2581 cgcgcctcgg cgaggagcgc gagggtggcc ggatcgccgg ccgccccgac gatcgcgacc
     2641 tcctgcacgg ccgcgagcga caggtccatc gccgacagcc accgggcaaa ccccgtcgcg
     2701 tagcgggtca cgtagggcac cacggttcgc agggcccggt ccgcggccga tcggtagacc
     2761 gacgcgccgg tccaggcatg gagccggagc aggacctccg cggcgaccgc gttgcccgac
     2821 ggaacggcgt tgtcctggac gtccttcggt cgggtcacga gccgttcgtg atcgtccgcg
     2881 gtgtcgaaga atccgccggc cggatcggcg aaccgctcga ggacgcgatc catcagcgcc
     2941 cgcgccgcca cgaaccagcg ctcgtcaaag gtcgcggcat acagcgccag cagcccgtcc
     3001 gcgaggtgcg tgtggtcctc gagcacgcca tgcccggtcg cgcgcccgtc cttccaggac
     3061 cggccgagag acccgtccgg tgccagcagg ccgtcgagga tcgtcccggc cgcgcgctcg
     3121 gccgccatgc ggtagcgggc ggcgtggtcc ggccggccgg tcgcgagcgc ggcggcggcg
     3181 tcggcgaggg ccccgatcgc gagcccgttc caggctgcca gggccttgcc gtcccgggcg
     3241 ggctgcggcc gggtgtcgcg atgcgccagc atcgcccggc gggcgtcggc cagctgctcg
     3301 cgcacctcgg cctcgggcag gccgaaccgg cccgccagct ccccgtcggc ggcgacccgg
     3361 ctgaggatcg tccggccttc ccagtttccg gcttcggtca cgccgtacgc cgcctcgaag
     3421 agcggcgatc gctcgccgag ggtcgcccgg acctcgtcgg cggtccagac gaaggtcgcg
     3481 ccctcctcgc cgtcggtgtc ggcatcctgg ctcgccgcga acgcgccgtc gtcggtcgtc
     3541 agctcccgga ccatgtagtc gagcgtgccg gtcgcgacgt cgaggtaggc ctcgtcatcg
     3601 caggtctgcc acgcgtgcag gtaggtccgg gcgagctggg cgttgtcgta gagcatctgc
     3661 tcgaagtgcg gcacgagcca ccgcgcgtcg gtggcgtagc gatggaatcc gccgccgagc
     3721 tggtcatgga tcccgccgtc ggccatcgcc tcgagcgccc gccgggcgac cgccagcgcg
     3781 gccgggtcgc ggctgtcagc gacccgccgg agcaggaact cgatcgtcat cggctggggg
     3841 aacttcggca cgccgcccca gccaccggtg ccctggtcga acgaccggac gacgagggcc
     3901 acggccgcct cgacgaggtc cggcctggcc ggtggct
//
LOCUS       DATDDI010000749         2583 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_307012, whole genome shotgun sequence.
ACCESSION   DATDDI010000749 DATDDI010000000
VERSION     DATDDI010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307012"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..1248)
                     /gene="greA"
                     /locus_tag="VIU37_10900"
     CDS             complement(4..1248)
                     /gene="greA"
                     /locus_tag="VIU37_10900"
                     /inference="COORDINATES: protein motif:HMM:NF001263.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEY6014511.1"
                     /translation="MTTDTTAPALLRSVGLMADGPGQWGRPVPASGPGVFVVELPAPL
                     PAAPIELTRVGKWIERVETLRLDGERPTSKALAARLAAFWLPSQTILYVGASDASVRR
                     RLAAIEATALGDRRPSAAGYWLKVLRALDGTKIWWAATTATEEYEDALLDAFADGVTA
                     AERAGLPDPAVVLPFANLRRASGERKSTGLTGALLAEPVVAPAPPTRVVVVPDGDAEG
                     AHGEPPPPRSRVSERPVARPAGPRRSVAAVTRDRLAAEAAAEAAQGVQELTVEGAARL
                     RAELEELTQVRRPQVIARIRTAKEHGDLKENAEYHAAREEQGFLEGRIKTLESKLKIA
                     VVVAPTERGANVELGSHVRVEVDGEETTMQVVSSAEANSREGRISSASPVGAALMGRK
                     VGDVVTIVTPGGEIRYAVLEIS"
     gene            1314..>2583
                     /locus_tag="VIU37_10905"
     CDS             1314..>2583
                     /locus_tag="VIU37_10905"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY6014512.1"
                     /translation="MRRAVRRPLLAIVLVALAGTAWATLAPGLTLPFDRTAAAPAALA
                     ASSAGPAGNPSASPADPSSSPIPAGTPTPSPAATPTPTPVGTPTPTPTPLPVTIEEKR
                     AVLSATLLRLRAAYGIPGISAAMTFPDGTSWVARAGFADVARHRVVTATTEFAAGSIS
                     KTFTSALILRLAEDGRLSLDAPVRTYLPKLAIDPAITVRQLLDHTSGLDDFFSHSAID
                     KALLAHPARPWSAADSLRYVAKPYFRPGAGWHYSNTNYLVLGMVAEAVGGAPLATQLR
                     TAFFDPLGLRHTVYQWVERPRGPIAHGYRFTSPNPKQKGIDVSDGTTVIPFTSVVTAA
                     GGAGSIATTASDLVRWARALYGGSVLRPETLAAMVDDATVTTALKSSVPYGLGVQVVT
                     IDVRQAMGHSGRLLGFRAVMRWLPVEGIAVT"
BASE COUNT          329 a          998 c          899 g          357 t
ORIGIN      
        1 cggtcaggag atctccagca ccgcgtagcg gatctcgccg ccaggggtca cgatcgtcac
       61 gacgtcgccg accttgcggc ccatcagcgc ggcgccaacg ggtgacgcgg acgagatccg
      121 gccctcgcgg gagttggcct cggccgagga gacgacctgc atcgtggtct cctcgccgtc
      181 gacttccacg cgcacgtgcg agcccagctc aacgttcgcg ccgcgttccg tcggcgcgac
      241 gacgaccgcg atcttgagct tcgactcgag cgtcttgatg cgcccctcga ggaagccctg
      301 ctcctcgcgc gcggcgtggt actcggcgtt ctccttgagg tcgccgtgct ccttggcggt
      361 ccggatgcgg gcgatcacct ggggccggcg cacctgggtc agctcttcga gctcggcacg
      421 gagccgcgcc gccccctcga ccgtcagttc ctggacaccc tgcgccgcct cggccgccgc
      481 ctccgcggcg agccggtcgc gggtgacggc ggcaaccgat cgtcgtggac ccgcgggccg
      541 cgccaccggc cgttcggaca cccggctgcg aggcggggga ggctccccgt gggcgccctc
      601 cgcgtcgcca tccggcacga ccacgacccg ggtcggcggc gctggcgcca ccaccggttc
      661 ggccagcaac gcgccggtca gcccggtcga cttgcgctcc ccggacgccc ggcggaggtt
      721 cgcgaacggg agcacgacgg ccggatcggg caatccggcg cgctccgccg ccgtcacgcc
      781 gtcggcgaag gcgtccagca gcgcatcctc gtactcctcc gtcgcggtcg tggcggccca
      841 ccagatcttc gtgccgtcga gtgcccggag gaccttgagc cagtatccgg ccgcggacgg
      901 ccgccgatcc ccgagcgccg tcgcctcgat ggcggccagc cggcggcgga ccgaggcgtc
      961 cgaggcgccc acgtacagga tcgtctggga cggcagccag aaggcagcca ggcgcgcggc
     1021 aagcgccttc gacgtcggcc gctccccgtc gagccgcagc gtctcgaccc gttcgatcca
     1081 cttgccgacg cgggtcagct cgatcggcgc ggcgggcagc ggagcgggca gctcgaccac
     1141 gaacacgccg gggcccgagg ccggcaccgg gcggccccac tggccggggc cgtcggccat
     1201 caggcccacc gagcggagga gcgccggagc ggtcgtgtcg gtcgtcatcg cccgatggta
     1261 cccgcgggcc tcccggggta tcgtgccgcc aacatgcttc gccgcatctg cccatgagac
     1321 gggctgtccg ccggccgctt ctcgccatcg tcctcgtcgc ccttgcgggc acggcctggg
     1381 cgacgctggc tcccgggctg acgctgccct tcgatcggac ggccgcggca ccggcggcac
     1441 tggcggcctc gagcgcgggc ccggcgggga acccgtcggc ctcgccggcg gacccgtcga
     1501 gcagcccgat cccggccggc acgcccacgc cgtcacccgc cgccacgccc acgccgaccc
     1561 cggtcggcac gcccaccccg accccgacgc cgctccccgt caccatcgag gagaagcgcg
     1621 cggtcctgtc cgcgaccctg ctgcggctgc gggccgccta cgggatcccg ggcatctccg
     1681 cggcgatgac cttccccgac ggcacgagct gggtcgccag ggccggcttt gccgacgtgg
     1741 cgcgacatcg cgtcgtgacc gcgacgaccg agttcgcagc cgggagcatc tcgaagacct
     1801 tcacctccgc gctgatcctg cggttggccg aggacggtcg gctttcgctg gacgccccgg
     1861 tccggaccta cctgccgaag ctggcgatcg atcccgcgat cacggtccgc cagctgctgg
     1921 accacaccag tggcctcgac gacttcttca gtcactcggc gatcgacaag gcgctgctcg
     1981 cccatccggc acgcccctgg tcggcggcag actcgctcag gtacgtggcc aagccgtact
     2041 tccgcccggg cgccggctgg cactactcga acaccaatta cctcgtgctg ggcatggtcg
     2101 cggaggcggt cggcggcgcg ccgctggcga cccagctccg aacggcgttc ttcgatccgc
     2161 tcggacttcg gcacaccgtc taccagtggg tggagaggcc gcgcggaccg atcgcccatg
     2221 gctatcgctt cacgagcccg aatccgaagc agaaggggat cgacgtgtcc gacggcacga
     2281 cggtcatccc gttcacgtcg gtcgtcacgg cggccggcgg ggcgggttcg atcgccacga
     2341 ccgcgtcaga cctcgtccgc tgggcgcggg cgctctacgg cggctcggtg ctccggcccg
     2401 agacgctggc cgcgatggtc gacgacgcca ccgtgacgac cgccctgaag tcgagcgtcc
     2461 cgtacggcct cggcgtccag gtcgtgacca tcgatgtgcg gcaggccatg ggccattccg
     2521 gacgcctgct cggcttccgg gccgtgatgc gctggctgcc ggtcgagggg atcgccgtga
     2581 cgg
//
LOCUS       DATDDI010000750         5283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_99179, whole genome shotgun sequence.
ACCESSION   DATDDI010000750 DATDDI010000000
VERSION     DATDDI010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5283
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99179"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1737)
                     /locus_tag="VIU37_10910"
     CDS             complement(<1..1737)
                     /locus_tag="VIU37_10910"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6014513.1"
                     /translation="MAADSSYRSDARPDFAPFEESCGTITGFAYAGDLASELASGSLT
                     GAEALDLLDDMLAVRDLEEMIVRLRSGGYDPLPGYDYRGPTHVSIGQEGTAVGAASAL
                     RPDDQITSSHRGHGDAIAKGFAAIRRMTVEELGARVPATAGQDRDALLAAALEEHVYR
                     TIAELFGKDEGYCRGRGGGMHIGDFATGHLGANAIVGGSVPIATGAAMAARYEGSDRV
                     VCCFVGDGAFANGVVLESLNWATQHQWTNHLAGERAHGLPVIYFIQNNHYGMTHRTDE
                     EVMGVRHLARRGAGFAADNMHAEVVNGMDLLAVRDAIRRAAALCRAGEGPVLIEASTY
                     RYYGHSLSDPRNEYRTREEEAAWRAVDPIDRLHRQLIECGVADEAAIAAIERRSADRN
                     ARAAVRASRATDPDPAAVLDLLYTDTTSDSVPAAAAGVVPHADPPAAKRGADGAISYK
                     DALREALVEEMLRDRRVLLYGEDVADYGGAFKLTKGLLEAFGRDRVFNTPISEACICG
                     TAVGAAIAGLRPVVELMYMDFALMASDQIANQVGKWHYMSGAQLEVPLVIRASVGAGN
                     GYGGQHSQSLESI"
     gene            1854..2639
                     /locus_tag="VIU37_10915"
     CDS             1854..2639
                     /locus_tag="VIU37_10915"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6014514.1"
                     /translation="MSQLDRFRLDGRAALVAGGGGAIGSALAVALAGAGANVAIVDQS
                     DERTQAAAEQLRALGGGSLAFAADLTTEAEAERVVEATVAAFGRLDIIVNAIGGGAGK
                     VLFDAEAYPRDAWDWIYELNVRSTLVATQAAVKAMIAGGRGGRVLNISSVRATLGINA
                     GYSAYVAAKGAISSLTRQWATEWAKHGITVNAIAPTFVDTPQVAMLLGDPAFKASIVS
                     RIPLGRVGGTDDLTGPALFFCSDASSFVTGQILGIDGGLTATQ"
     gene            2716..3771
                     /locus_tag="VIU37_10920"
     CDS             2716..3771
                     /locus_tag="VIU37_10920"
                     /inference="COORDINATES: protein motif:HMM:NF028222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY6014515.1"
                     /translation="MPATMQALVVVEPNRLEIREVPVPEPGPNEVLARVRAVSICGTD
                     AHLIRGDYPGFWPPAFPFIPGHEWAGEIVGLGSGAERFGWSVGDRVAGTSHDACGVCR
                     ECVEGRYNLCENYGKPGLHRQYGHSIQGADATYVVHGVKCIFPLPDALTFEDGALVDP
                     ASIALHVANRGNIIPGDTVAITGAGAIGLLAGDAARIRGAARVIVVGRGQRLAKAAAL
                     GFETVDSTAGDPVAAVRGMTAGLGADVVLECAGVPEVIEWALEMLRRGGRCAVVGIPT
                     QGVELALQKLVLDELELVGSRASAGEMRRVIPHVEQGRMRVRELVTHRFALADYERAL
                     ATFNDRSSGAIKIIVAP"
     gene            complement(3811..4428)
                     /locus_tag="VIU37_10925"
     CDS             complement(3811..4428)
                     /locus_tag="VIU37_10925"
                     /inference="COORDINATES: protein motif:HMM:NF018232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 family protein"
                     /protein_id="HEY6014516.1"
                     /translation="MQADSAPLATPPTIDRVPLWLASSITVVVSLPFGLWLGDFNLPL
                     WVAFIVWAEYFQLGAKPVVLRTIIPAYLIGVAGATSITTANALLERVIPDLTIVSRGD
                     VAAFVSFFAGFCVLIYAMRWMGPTRTGTLPFFNGISMTLGVLFTGAFETAVGPDVDAV
                     LLPAVAGIGAALAGLLGAALGWFNVAIMFTRPAPGAMLDRRHLTA"
     gene            complement(4418..5194)
                     /locus_tag="VIU37_10930"
     CDS             complement(4418..5194)
                     /locus_tag="VIU37_10930"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6014517.1"
                     /translation="MATGLAGRRVIVTGASSGLGAGTVRLLAGRGAHVLAAARRGDRL
                     DRLANELRDAPGRVAVCRADVTRDADARAMVAAAVDAFGGIDVLVNNAGSEVQAPIDR
                     LAEEEFDGMLRANVTSVFLCTRAALAELRRSRGVVVNLGSTVVSRPPRGRFGYVASKG
                     AVEAMSRALALDLGRDGIRVNTIRPGIIPSELRGSTEAAERARFASGVTFGKQALSAV
                     GDPCDVAEAIAWLCDDGGRWVTGAVIDVDGGYVLGAADAG"
BASE COUNT          746 a         1939 c         1871 g          727 t
ORIGIN      
        1 gatgctctcc agcgattgcg agtgctgccc accgtagccg ttgccggcgc cgaccgaggc
       61 gcggatcacc agcggcacct ccagctgggc gccgctcatg taatgccact tgccgacctg
      121 gttggcgatc tggtctgacg ccatcagcgc gaagtccatg tacatcagct cgacgacggg
      181 tcgtaacccg gcgatcgcgg cgcccacggc cgtgccgcag atgcaggcct ccgagatcgg
      241 cgtgttgaag acgcgatcac gcccgaaggc ctcgagcagc cccttcgtga gcttgaacgc
      301 gccgccgtag tcggcgacgt cctcaccgta gagcagcacc cggcggtcgc ggagcatctc
      361 ctccacgagc gcctcgcgca aggcgtcctt gtagctgatc gcgccgtcgg cgccgcgctt
      421 cgccgccggc gggtcggcgt gcgggacgac accggcggcg gctgcgggta cggagtcgga
      481 cgtcgtgtcc gtatagagca ggtcgagcac ggccgccggg tcgggatcgg tcgcccgcga
      541 cgcccggacc gcggcccggg catttcggtc ggcactgcgc cgctcgatcg cggcgatcgc
      601 ggcctcgtcg gcaacaccgc actcgatcag ctggcggtgc aaccggtcga tcgggtcgac
      661 cgcccgccag gcggcctcct cctcccgggt tcggtattcg tttctggggt ccgagaggga
      721 gtggccgtaa tagcggtacg tgctcgcctc gatgaggacc ggcccctcgc ccgcacggca
      781 gagcgccgcc gcgcgccgga tcgcgtcgcg cacggcgagc agatccatgc cgttcacgac
      841 ctcggcgtgc atgttgtcgg cggcgaagcc cgccccgcgc cgggccaggt ggcggacgcc
      901 catgacctcc tcgtcggtcc ggtgggtcat gccgtagtgg ttgttctgga tgaagtagat
      961 gaccggcagc ccgtgcgccc gctcgccggc caggtggttg gtccattgat gctgggtcgc
     1021 ccagttgagc gactcgagga cgacgccgtt ggcgaaggcg ccgtcgccga cgaagcagca
     1081 cacgacgcga tcgctcccct cgtaccgtgc ggccatcgcc gccccggtcg cgatcgggac
     1141 gctcccgccg acgatcgcgt tcgctcccag gtgtccggtg gcgaagtcgc cgatgtgcat
     1201 cccgccgccc cggccccggc agtagccctc gtccttgccg aacagctcgg cgatcgtgcg
     1261 gtagacatgc tcctcgagcg ccgccgccag gagcgcatcg cgatcctgcc ccgcggtcgc
     1321 cgggacgcgg gcgccgagct cctcgaccgt catccgccgg atcgcggcga agcccttggc
     1381 gatggcgtcg ccgtgacctc gatgcgagct cgtgatctgg tcatccggcc gaagcgcgga
     1441 cgccgcgccg acggcggtgc cctcctggcc gatcgagacg tgggtcggac cgcggtagtc
     1501 gtagcccggc agcgggtcgt acccgcccga gcgaagccgg acgatcatct cctcgaggtc
     1561 gcggaccgcg agcatgtcgt cgaggaggtc gagcgcctcg gccccggtca ggctgcccga
     1621 cgcgagctcc gaggccaggt cccccgcgta ggcgaacccg gtgatcgtcc cgcacgattc
     1681 ctcgaacggc gcgaagtcgg gtcgcgcatc gctgcggtag ctcgaatccg cggccatgac
     1741 agtcctccga gcatcgattg cggccacgtg gccctcgctc gcggcgattg acccgcaggc
     1801 tcgttgtcgc gtatcctcga taatcgatga taaccgaccg aaaggtggaa cgcatgagtc
     1861 agcttgatcg tttccggctc gacgggcgtg ccgccctcgt cgccggcggc gggggcgcga
     1921 tcggatcggc gctggccgtg gcgctcgccg gagccggcgc gaacgtcgcg atcgtggacc
     1981 agtcggacga acgcacccag gccgcggcgg agcagctccg tgccctcggc ggcgggagcc
     2041 tcgcgttcgc cgcggacctc acgaccgagg ccgaggccga acgggtcgtc gaggcgacgg
     2101 tggcggcgtt cgggcggctc gacatcatcg tcaacgccat cggcggcggc gccggcaagg
     2161 tcctgttcga cgccgaggcg tatcccaggg acgcctggga ctggatctac gagctcaacg
     2221 tccggagcac gctcgtcgcg acccaggccg ccgtcaaggc gatgatcgcg ggtggtcgcg
     2281 gcggacgcgt cctcaatatc agctccgtcc gtgccacgct ggggatcaac gccggctact
     2341 cggcgtacgt ggcggcgaag ggcgcgatca gctcgctgac ccgccaatgg gccaccgagt
     2401 gggccaagca cggcatcacc gtcaacgcca tcgcccccac gttcgtcgac acgccgcagg
     2461 tggcgatgct cctgggcgac ccggccttca aggcgtcgat cgtcagccgg atcccgctgg
     2521 gtcgggtggg cggaacggac gacctgaccg ggccggcgct cttcttctgc tcggatgcct
     2581 cgtcgttcgt gaccggccag atcctcggga tcgatggcgg gctcaccgcc acccagtagc
     2641 gccgatcccg ccgcgcggct cgacccgcgc gggccgacgg tgtcgtcccg cacaacagcc
     2701 accggaggtg ccgccgtgcc cgcgaccatg caggcgctcg tcgtcgtcga gccgaaccgc
     2761 ctcgagatcc gggaagtccc ggtcccggaa cccggtccga acgaggtcct cgcgagggtc
     2821 agggccgtct ccatctgcgg cacggacgcc cacctcatcc gcggcgacta cccgggcttc
     2881 tggccgccgg cattcccgtt catccccggg cacgagtggg ccggggagat cgtggggctc
     2941 ggcagcgggg cggaacgctt cggctggtcg gtcggcgacc gggtggccgg cacctcgcac
     3001 gacgcgtgcg gcgtctgtcg cgaatgcgtg gaaggccgct acaacctgtg cgagaactac
     3061 ggcaagccgg gcctgcatcg ccagtacggg cacagcatcc agggcgcgga cgcgacgtac
     3121 gtcgtccacg gggtcaagtg catctttccc ctgccggacg cgctcacgtt cgaggacggg
     3181 gccctggtcg atccggcgtc gatcgccctc cacgtggcca atcgcggcaa catcatcccg
     3241 ggcgataccg tggcgatcac cggtgccggg gcgatcggac tgctggccgg cgacgcggcc
     3301 cgcattcgcg gggcggcccg ggtcatcgtc gtgggccgcg ggcagcggct ggccaaggcc
     3361 gcggcactcg gcttcgagac cgtcgattcg actgccggcg acccggtcgc ggccgtccgc
     3421 ggcatgaccg ccggcctcgg cgccgacgtg gtcctcgagt gcgccggcgt ccccgaggtc
     3481 atcgagtggg cgctcgagat gctgcgtcgc ggcggccgct gcgcggtggt cggcatcccc
     3541 acccagggcg tggagctggc actgcagaag ctcgtcctcg acgagctcga gctggtcggc
     3601 tcgcgcgcct cggccgggga gatgcgccgg gtcatccccc acgtcgagca gggtcggatg
     3661 cgggtccgcg agctcgtcac ccaccggttc gccctggccg actacgagcg ggcgctggca
     3721 accttcaacg accggtcgag cggggcgatc aagatcatcg tcgcgccctg actcgtcccg
     3781 gcccgcgacg gatcgtcggg gagccgcggg tcaggcggtg aggtgccgcc gatcgagcat
     3841 cgcgccgggc gccggtcgcg tgaacatgat cgcgacgttg aaccagccga gcgccgcgcc
     3901 gagcaggccg gccagcgcgg ccccgatgcc ggcgaccgcg gggagcagga ccgcgtcgac
     3961 atcgggcccg acggcggtct cgaacgcccc ggtgaacagg acgccgagcg tcatcgagat
     4021 gccgttgaag aacggcaacg tgccggtccg cgtcgggccc atccagcgca tcgcgtagat
     4081 caggacgcag aacccggcga agaacgagac gaacgccgcc acgtcgcccc ggctgacgat
     4141 ggtcaggtcc gggatcaccc gctcgagcag cgcgttggcc gtcgtgatcg acgtcgcgcc
     4201 ggcgaccccg atgaggtagg ccgggatgat cgtgcgcagc acgaccggct tggcgcccag
     4261 ctggaagtac tccgcccaga cgatgaacgc cacccacagc ggcaggttga agtcccccag
     4321 ccacaacccg aacggcaggc tgacgaccac ggtgatcgag ctggcgagcc agagcgggac
     4381 ccggtcgatc gtcggaggcg tcgccagcgg cgcgctgtca gcctgcatcg gccgccccca
     4441 ggacgtaccc gccgtcgacg tcgatcacgg ccccggtcac ccagcgaccg ccgtcgtcgc
     4501 agagccacgc gatcgcctcg gccacgtcgc aggggtcgcc gaccgcggac agggcctgct
     4561 tgccgaaggt gacgccgctc gcgaacctgg ctcgctccgc cgcctcggtc gacccgcgga
     4621 gctcggacgg gatgatcccc ggtcggatgg tgttgacccg gatcccgtcg cgcccgagat
     4681 cgagcgcgag cgcccggctc atcgcctcca ccgcgccctt gctggcgaca tagccgaacc
     4741 ggccgcgcgg cggccgcgag accacggtcg acccaaggtt gacgacgacg ccgcggctcc
     4801 ggcggagctc cgcgagcgcc gcccgcgtgc acaggaagac gctcgtgacg ttggcccgga
     4861 gcatcccgtc gaactcctcc tcggccagcc ggtcgatggg cgcctgcacc tcgctcccgg
     4921 cgttgttgac gaggacgtcg atcccgccga acgcgtcgac ggccgccgcg accatcgccc
     4981 gcgcatcggc gtcgcgggtc acgtcggccc ggcacaccgc gaccctcccg ggagcgtcgc
     5041 ggagctcgtt ggccagccgg tccagtcggt cgccccggcg ggccgccgcc aggacgtggg
     5101 cgccgcgtcc cgccagcagg cgcaccgtcc cggcccccag cccgctggac gcgcccgtca
     5161 cgatgacccg gcgcccggcc agacccgtcg ccatcaggcc cggccggcag ccacttcgtc
     5221 ggcccggttg cgcccggcga ggaggatcag ctcctcgtgg agctcgaacc agacgccgtg
     5281 gta
//
LOCUS       DATDDI010000751         2976 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_119893, whole genome shotgun sequence.
ACCESSION   DATDDI010000751 DATDDI010000000
VERSION     DATDDI010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119893"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VIU37_10935"
     CDS             <1..693
                     /locus_tag="VIU37_10935"
                     /inference="COORDINATES: protein motif:HMM:NF014510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA integrity scanning protein DisA
                     nucleotide-binding domain protein"
                     /protein_id="HEY6014518.1"
                     /translation="EVARAAAELSAEGHGALIVLERETGLEEVAETGVMVHADVSADL
                     LSTIFMPRSALHDGAVIIREDRIVAAGALLPLAETSIYSERFGTRHRAALGITEQTDA
                     VVVVVSEENGQISLVERARIVRNLTEVGLSRAIQGLLDPAAGRRGTLGWRAASEGRAA
                     AAVGSRRLADVSRLLARGRLAGPIPPRPGSRSGSGPTAAPTTSSAGTGAPPPAGTADD
                     DDGRSSTARISP"
     gene            690..1937
                     /locus_tag="VIU37_10940"
     CDS             690..1937
                     /locus_tag="VIU37_10940"
                     /inference="COORDINATES: protein motif:HMM:NF019561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdaR family protein"
                     /protein_id="HEY6014519.1"
                     /translation="MRRFLGRVVHNWPLKLAAIGLATLMYGGLVLSESTQTFNGDIAV
                     VPKGQPADTFLLTVPPHVTVIRYFAPAGVPVTSSSFTASVDLSSVDPQAGTVSVRIDV
                     SSPDVRIRVLGYEPQFMSVQLDPIDEKTVPVQVERGVVPPGLDLGDTTVTPANVVVSG
                     PQSIVRQVAAVRADVQIQPSGIDVDQDVQLVPIDGVGNAVRTVDVTPSTARVTIPVFS
                     NRQTRSLPVNPVLTGVPAAGFEIASVTVNPQIVLVEGDADQLAQLVSIDTSPISMTGV
                     SANSAVQASLALPTGIVAVGPDSVQVSIKLRQVTETRTFSAGLRLVGTRRDLTYDFTT
                     DRIIVTIGGSPADLDRLTGSALLVDLDVTGLGPGTVDVPVSIDLPTGPTLVSANPATV
                     TVTITATATPSPPAGPSPSPSGG"
     gene            1945..>2976
                     /locus_tag="VIU37_10945"
     CDS             1945..>2976
                     /locus_tag="VIU37_10945"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY6014520.1"
                     /translation="MARLFGTDGIRGVANVDLKPTTAYALGRAVAHRLVGRGGAIVVG
                     QDTRRSGDMFVSAIAAGATSLGADVHVVGVVPTPALAYLAGAGDYSAGIMVSASHNPA
                     DDNGLKVLDSHGLKLDDAIEDELEQLIWRTEELAGPANAEIGRLIDARERLDDYRRHR
                     MGLAREVSAAGVKLVLDGANGSGCFVGPEILAATGAIVSVIHAEPDGVNINVRAGATA
                     PASLAAAVVAAGADVGFALDGDADRLIAVDAAGQVVDGDQVLGILALDLLERGKLPGG
                     ALVVSVLSNGGLQAVIEAAGGQIVRTPVGDKYILEGMQVTGAGLGGEKSGHVIVLEHT
                     TSGDGIVTAL"
BASE COUNT          405 a         1088 c         1068 g          415 t
ORIGIN      
        1 gaggtcgcgc gtgccgcggc cgagctgtcc gccgaggggc acggcgcact gatcgtcctc
       61 gaacgcgaga ccggcctgga ggaggtggcc gagaccgggg tgatggtcca cgccgacgtg
      121 tcggcggacc tgctcagcac gatcttcatg ccgcgctccg ccctccatga cggcgcggtg
      181 atcatccgcg aggatcggat cgtggccgcc ggcgcgctcc tgccgctggc cgagacctcg
      241 atctactcgg agcggttcgg gacccgccat cgagcggcgc tcgggatcac cgagcagacc
      301 gacgccgtgg tcgtggtcgt ctccgaggag aacggccaga tcagcctggt ggagcgcgcc
      361 cggatcgtgc gcaacctcac cgaggtcggt ctcagccggg cgatccaggg gctgctcgac
      421 ccggccgccg ggcggcgcgg cacgctcggc tggcgggcgg cgagcgaggg tcgcgcggcc
      481 gcggccgtcg gctcgcgacg gttggccgac gtgagccggc tcctggctcg tggacgcctg
      541 gccgggccca tcccgccacg acccggctcg aggagcggat ccggcccgac ggccgctccc
      601 acgacgagct ccgccgggac cggtgcgccg ccgccggccg gcaccgccga tgacgacgac
      661 ggtcgttcgt cgaccgcccg gatctcgccg tgaggcgctt cctcggccgg gtggtccaca
      721 actggccact caagctcgcg gcgatcggcc tcgccaccct gatgtacggc ggcctggtgc
      781 tgtcggagag cacccagacc ttcaacggcg acatcgccgt ggtgccgaag ggtcagcccg
      841 cggacacgtt cctgctgacc gtgccgccgc acgtgacggt catccgctac ttcgccccgg
      901 ccggcgtgcc ggtgaccagc agctcgttca cggcgtcggt cgatctgtcg tcggtcgatc
      961 cgcaggccgg caccgtcagc gtccggatcg acgtcagctc accggacgta cggatccggg
     1021 tcctcggcta cgagccccag ttcatgagcg tccagctcga cccgatcgac gagaagaccg
     1081 tccccgtcca ggtcgagcgc ggcgtcgtcc cgcccggcct cgacctcggc gacacgacgg
     1141 tcaccccggc gaacgtcgtc gtgtcggggc cccagtccat cgtgcgccag gtcgcggcgg
     1201 tccgggccga cgtccagatc cagccgtccg gcatcgacgt tgaccaggac gtccagctgg
     1261 tgccgatcga cggcgtgggc aatgccgtcc ggacggtgga cgtcaccccg tcgaccgcgc
     1321 gggtgacgat cccggtcttc tccaatcgcc agacccgctc gctgccggtc aatccggtgc
     1381 tgacgggcgt gcccgcggcc ggattcgaga tcgccagcgt gacggtgaac ccccagatcg
     1441 tgctggtcga gggcgatgcc gaccagctcg cgcagctcgt cagcatcgac acgagtccca
     1501 tctcgatgac cggggtctcg gccaacagcg cggtccaggc gtcgctggcg ctgccgaccg
     1561 gcatcgtcgc cgtcgggccc gattcggtcc aggtctcgat caagctccgc caggtgaccg
     1621 agacccgcac gttcagcgcc gggctccgcc tggtcggcac gcggcgagac ctgacctacg
     1681 acttcacgac ggaccggatc atcgtgacca tcggcggctc cccggccgac ctcgaccggt
     1741 tgacgggatc cgcactgttg gtcgatctcg acgtgaccgg cctggggccg ggcacggtcg
     1801 acgtgccggt cagcatcgac ctgccgacgg gaccgacgct cgtctcggcc aacccggcga
     1861 cggtcaccgt caccatcacg gcgaccgcga cgccgtcgcc cccggcgggt ccatccccgt
     1921 cgccgtcggg cggctgaggc gtcgatggcc cgcctgttcg gcaccgacgg aatccggggt
     1981 gtcgccaacg tcgatctcaa gcccaccacg gcttacgccc tgggccgtgc ggtcgcccac
     2041 cgcctcgtcg gccgcggcgg cgcgatcgtc gttggccagg acacccgccg ttcgggcgac
     2101 atgttcgtgt cggcgatcgc cgccggtgcc acgagcctcg gtgccgacgt ccacgtggtg
     2161 ggcgtcgtcc cgaccccggc cctggcgtac ctcgccgggg ccggagacta ctccgccggg
     2221 atcatggtct cggcctccca caacccggcc gacgacaacg ggctcaaggt cctcgacagc
     2281 cacgggctca agctcgacga cgcgatcgag gacgagctcg agcagctgat ctggcggacc
     2341 gaggagctcg ccgggccggc caacgccgag atcggccggc tgatcgatgc ccgggagcgg
     2401 ctggacgact accggcggca ccggatggga ctcgccaggg aggtgtccgc cgccggcgtg
     2461 aagctggtcc tcgacggagc gaacggctcc ggctgcttcg tcggcccgga gatcctggcc
     2521 gccaccggcg cgatcgtgag cgtcatccat gccgaacccg acggggtcaa catcaacgtc
     2581 cgggccggtg ccaccgcccc ggcgtcgctg gcggcggcgg tcgtggccgc cggcgccgac
     2641 gtcgggttcg cgctcgacgg cgacgcggac cggctcatcg cggtcgacgc ggccggacag
     2701 gtggtcgacg gcgatcaggt gctcggcatc ctggcgctgg atctgctgga gcgggggaag
     2761 ctgccgggcg gggcgctggt cgtgtccgtc ctgtcgaacg gcggactcca ggcggtgatc
     2821 gaggccgccg gcgggcagat cgtccggacg ccggtgggcg acaagtacat cctcgagggg
     2881 atgcaggtga ccggggccgg actgggcggc gagaagagtg gccacgtcat cgtgctcgag
     2941 cacacgacct cgggcgacgg gatcgtgacc gcgctc
//
LOCUS       DATDDI010000752         2106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_744095, whole genome shotgun sequence.
ACCESSION   DATDDI010000752 DATDDI010000000
VERSION     DATDDI010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_744095"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VIU37_10950"
     CDS             <1..284
                     /locus_tag="VIU37_10950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014521.1"
                     /translation="IATVARSQLAGVGVGIAVYFGEQFATIFLPDVVKYLPFHAAGAV
                     VATTGGEFGGSGGQLAQLDPNGALLVVGVWLAGALLVTSLFTERAEISG"
     gene            complement(291..1160)
                     /locus_tag="VIU37_10955"
     CDS             complement(291..1160)
                     /locus_tag="VIU37_10955"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY6014522.1"
                     /translation="MTGPLRLDGVFGVLPTAFHDDDALDLDGTAALVHAYVDAGVAGV
                     TALGVMGEAAELTEEERRRVMAAAVAGAAPRPVIVGVSGETREIVGARARDAAGRGVS
                     AVMVSPSRTLGLREAVDAAADGGLPVVVQDYPAGSGVVLDHDAIAAVADGCRLVVGVK
                     AEAPPTTGLIAALHRSHPGLGLLGGLGGLFLIDELRAGATGVMTGLAVPDRLVSIVAR
                     YATDPAGAERAWTDLLPLMRLEAFQPFSLAARKEVWRLRGVIGSARCRRAGATLDERA
                     RDDVRRALDRVLA"
     gene            complement(1157..1924)
                     /locus_tag="VIU37_10960"
     CDS             complement(1157..1924)
                     /locus_tag="VIU37_10960"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6014523.1"
                     /translation="MDLKLAQHRFLVGGASHGLGAAVARALVAEGAAVAGAGRDPRTL
                     ADALEPIGGIPIAADLSTADGPPAAVRHAVDALGGLDGLLVNTGGPPQGSFAALDEAA
                     WERAIAGTLLSSIRLIREALPHLRDGRDPAIVVILSSSVREPIPGLVTSNVLRPGLAG
                     LIKSLVGEIAPIRINGVAPGRFDTERVRSIDETRAAETGQTVEAIQDQTRARIPLGRY
                     GDPDEMGRVIAFLLSPAASYLNGVILAVDGGLIRSLP"
BASE COUNT          274 a          811 c          764 g          257 t
ORIGIN      
        1 cgatcgcgac cgtggcgcgc agccagctgg cgggcgtcgg cgtcgggatc gcggtctact
       61 tcggcgagca gttcgccacg atcttcctgc ccgacgtggt gaagtacctg ccgttccacg
      121 ccgccggcgc ggtcgtggcc accacgggcg gcgagttcgg tgggagcggc gggcagctgg
      181 cccagctcga tcccaacggg gcgctcctgg tcgtcggggt gtggctcgcc ggcgccctgc
      241 tggtcacctc gctgttcacg gagcgagccg agatctccgg ctgacgccgg tcaggcgagg
      301 acgcgatcca gggcgcgcct gacgtcgtcc cgcgcccgtt cgtcgagcgt cgcgccggcg
      361 cgccggcacc gcgccgagcc gatcacccca cgcagccgcc agacttcctt gcgtgcggcc
      421 aggctgaacg gctggaacgc ctcgagccgc atgagcggca gcaggtcggt ccacgcccgt
      481 tcggctcccg ccgggtccgt cgcgtatcgc gccacgatcg acaccaggcg gtcgggcacg
      541 gcaagcccgg tcatcacccc tgtggctccc gcccggagct cgtcgatgag gaagaggccg
      601 ccgagcccgc cgagcagccc gagcccggga tggctccggt gcagcgcggc gatcaggccg
      661 gtcgtcggcg gggcttccgc cttgacgccg acgacgagtc ggcagccgtc cgccaccgcg
      721 gcgatcgcgt catggtcgag gacgacgccg gatcccgccg ggtagtcctg gacgacgacc
      781 ggcagcccgc cgtccgccgc ggcgtccacc gcttcgcgca ggccgagggt ccgcgagggg
      841 ctgaccatca ccgcgctgac gccccgcccg gccgcatcgc gcgcccgggc gccgacgatc
      901 tcgcgcgtct caccgctcac gcccacgatg accggccggg gcgcggcgcc cgccacggcc
      961 gcggccatga cccggcgccg ctcttcctcg gtcagctccg ccgcctcgcc catgacgccg
     1021 agcgcggtca cgcccgcgac cccggcgtcg acgtaggcat ggacgagcgc ggccgtgccg
     1081 tccaggtcga gcgcgtcgtc gtcgtggaag gccgtcggca ggacgccgaa cacgccgtcg
     1141 agccggagtg gtccggtcac ggcaggcttc ggatcaggcc gccgtcgacc gccaggatga
     1201 ccccgttcag gtacgaggcg gccggcgaca ggaggaacgc gatcacgcgg cccatctcgt
     1261 cggggtcgcc gtaccggccc agcgggatcc gcgcccgcgt ctggtcctgg atcgcctcga
     1321 ccgtctggcc ggtctcggcc gcccgggtct cgtcgatgga gcggacccgc tcggtgtcga
     1381 agcggccggg cgccacgccg ttgatccgga tcggggcgat ctcgccgacc aggctcttga
     1441 tcaggccggc gagccccggg cgcagcacgt tcgaggtcac caggccgggg atcggttcgc
     1501 gcaccgacga cgacaggatg acgacgatgg ccggatcccg gccgtcgcgc aggtgcggca
     1561 gcgcctcgcg gatcagccgg atcgagctca gcagggtccc cgcgatcgct cgctcccagg
     1621 cggcctcgtc gagcgcggca aaggaaccct ggggcgggcc accggtattg acgagcaacc
     1681 cgtcgaggcc accgagcgcg tcgacggcgt ggcgcaccgc cgccggcggt ccatccgccg
     1741 tcgacaggtc ggcggcgatc gggatcccgc cgatcggctc cagggcgtcc gccagcgtcc
     1801 gagggtcgcg cccggcgccg gcgacggcgg caccctcggc gacgagtgcg cgggccacgg
     1861 cagccccgag cccatggctc gcgccgccga ccaggaaccg gtgttgagcg agcttcaggt
     1921 ccatcccgga agcctacacg ccccggcgtc acgcgaaccg gccacgcgca cgcaatcgta
     1981 tgaccgcatg gcggcggtgc tacgcttcct gggatgcgat ccgacgacac cgacggcgag
     2041 cgccccccga catcgaggcc ggcgctccgg cctccggcac cgtcgtcgtg cgccgtccgg
     2101 ccgaac
//
LOCUS       DATDDI010000753         1902 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_473724, whole genome shotgun sequence.
ACCESSION   DATDDI010000753 DATDDI010000000
VERSION     DATDDI010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473724"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..631)
                     /locus_tag="VIU37_10965"
     CDS             complement(<1..631)
                     /locus_tag="VIU37_10965"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEY6014524.1"
                     /translation="MTTAIQEEIVHPDGRHELAPEADAALAGSPLHNADLAPIPVSKR
                     IWTTYNYVALWIGMAHNVATWTLAAGLVALGMAWYQAIFTIMVANIIVLVPMLANSHA
                     GTKYGIPFPVFARASFGVVGANLPALIRAGVACGWFGIQTWIGGGAIYTLMGALLGDG
                     WTKASSISIGFGTAASQPWTLWLSFIVFWALNLVIIVRGMDAVRRFENWA"
     gene            complement(751..>1902)
                     /locus_tag="VIU37_10970"
     CDS             complement(751..>1902)
                     /locus_tag="VIU37_10970"
                     /inference="COORDINATES: protein motif:HMM:NF004718.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6014525.1"
                     /translation="MSVNIGHGDRRVTDAIADQARTLAFAAPQFATEVRGRLGKLLSE
                     LTPGDLNTFFFTLGGAEANENAMRMARMVTGRQKVLARFRSYHGATAGAISVTGDPRR
                     WASEPAVPGVIHVLDPWRWGRDEPEPVDEHLAYLEEVIQYEGPHTIAAFILETVTGTN
                     GILIPPDGYLRGVRDLCTKYGILMIADEVMAGFGRTGRWFAVDHWDVVPDLLTMAKGL
                     TSSYLPLGAVAMSDKVADYFAERVYYGGLTYSAHPMGCAAAIAAINVLRDDDLVGNAA
                     RLDPVLRGLLAELKAAHPSVGAVRNIGLFGIVELIRDRQTREPMAPFNGSSPEMAALD
                     ARLREAGLFTMTHWNAFFTNPPLCITEEQLREGFAIIDRALEEADSAVS"
BASE COUNT          293 a          641 c          668 g          300 t
ORIGIN      
        1 ccgcccagtt ctcgaaccgg cggacggcgt ccatgccgcg cacgatgatg accaggttca
       61 gcgcccagaa gacgatgaag ctgagccaca gcgtccacgg ctgcgaggcg gccgtgccga
      121 agccgatgga gatcgacgac gccttcgtcc agccgtcgcc caggagggcg cccatcaggg
      181 tgtagatggc gccgccgccg atccaggtct ggatcccgaa ccagccgcag gcgacgccgg
      241 cccggatcag ggccgggagg ttggccccga ccaccccgaa cgatgcccgc gcgaagacgg
      301 ggaacgggat cccgtacttc gtgccggcat ggctgttggc cagcatcgga acgagcacga
      361 tgatgttggc gaccatgatc gtgaagatgg cctggtacca ggccatcccc agcgcgacga
      421 ggcccgcggc caacgtccag gtggccacgt tgtgggccat gccgatccac agggccacgt
      481 agttgtacgt ggtccagatt cgtttcgaga ccgggatggg cgccaggtcc gcgttgtgca
      541 gcggggaacc ggccaaggcc gcgtccgctt cgggcgccaa ttcgtgtcgt ccgtcgggat
      601 ggacgatctc ctcttgaatc gccgtagtca tgggcctcct tcgtcgcgaa agcgcgggct
      661 gcggattgca tcgacaggct cgctaggagc caattccagg ctcggtcagg cccacctcct
      721 cgttccctcc ggttctccct gccccctcgt tcaggagacg gccgagtccg cctcctcgag
      781 cgcgcgatcg atgatcgcga agccctcccg caactgctcc tccgtgatgc acagcggcgg
      841 gttcgtgaag aacgcgttcc agtgggtcat cgtgaacaga cccgcttcgc gcaggcgcgc
      901 gtcgagggcc gccatctcgg gtgagctccc gttgaatggc gccatcggct cccgggtttg
      961 ccggtcgcgg atgagctcga cgatgccgaa caggccgatg ttgcgcaccg cgccgacgct
     1021 cgggtgggcc gccttgagct cggcgagcag gccccggagc accgggtcga gccgcgccgc
     1081 gttcccgacg aggtcgtcgt cgcggaggac gttgatcgcg gcgatcgcgg ccgcgcagcc
     1141 catcggatgg gcggagtacg tcagcccgcc gtagtagacg cgttcggcga agtagtcggc
     1201 caccttgtcg gacatcgcga ccgcgccgag cgggaggtag gagctggtca ggcccttcgc
     1261 catggtcagc aggtccggta ccacgtccca gtggtcgacg gcgaaccagc ggcccgtccg
     1321 gccgaacccg gccatcacct cgtcggcgat catcaggatc ccgtacttgg tgcacaggtc
     1381 ccgcacgccc cggagatagc cgtccggcgg gatgaggatg ccgttggtgc cggtcacggt
     1441 ctcgaggatg aaggccgcga tcgtgtgcgg gccctcgtac tggatgactt cctcgagata
     1501 ggcgagatgc tcgtcgaccg gctcgggctc gtcgcgtccc cagcgccacg ggtcgaggac
     1561 gtggatgacg cccggcacgg cgggctcgct ggcccagcgg cgcggatcgc cggtgacgct
     1621 gatcgcgccg gcggtcgcgc cgtggtacga gcggaacctc gcgaggacct tctgccggcc
     1681 agtgaccatc cgcgccatgc gcatggcgtt ctcgttcgcc tcggcgccgc caagggtgaa
     1741 gaagaacgtg ttgagatcgc ccggcgtgag ctccgacagg agcttgccga gccgtccccg
     1801 tacctcggtc gcgaactgcg gcgcggcgaa ggcgagcgtg cgtgcctggt cggcgatggc
     1861 gtcggtcacc cggcgatcgc cgtggccgat gttgacgctc at
//
LOCUS       DATDDI010000754         3006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_598837, whole genome shotgun sequence.
ACCESSION   DATDDI010000754 DATDDI010000000
VERSION     DATDDI010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598837"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1656)
                     /locus_tag="VIU37_10975"
     CDS             complement(<1..1656)
                     /locus_tag="VIU37_10975"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEY6014526.1"
                     /translation="MNRFQKLAALCLATALGLVTIGVVVRATESGLGCPDWPFCYGQI
                     LPPAGDFKAWIEWVHRTIAAVIGFEILALAVLAVRDHRSRISILWPTLGAVVLVGFQA
                     WLGRETVRLGNSGESVTAHLASAMALVGLLVFLTVRAGYPAHLPRRGTSQRFTLLAAF
                     AAAATFALLLFGSQVTATDSALVFPDWPLMGGTLAPPVTDVTGAHVLHRWVAAVVGLI
                     VVAVAVAAWRTQRDRRTLVRLSVGAAALFGLQVVIGGAQVLTRMAEWTQTLHLALGAV
                     IWATMAGLTVTSYYSARSTTGVIAGPESGADVSSPPRSTGDTVRAYIALTKPRIIELL
                     LVTTVPAMVLATRDLPGVGGLRGAVDWAGWGAIVFWTMLGGTLAAGSANAINCYLDRD
                     IDLLMTRTRRRPLPAHQVEPERAVVFGIVLGAISIAMMAWFVNLTAAFLTLLAIGFYV
                     VVYTVLLKRTTTQNIVIGGAAGALPPVIGWAAVTGSVGVPALLLFALVFYWTPPHFWA
                     LSLRIRKDYAAAGVPMLPVVKGIPETTRQIALYAVLMVAISLVL"
     gene            1751..2665
                     /locus_tag="VIU37_10980"
     CDS             1751..2665
                     /locus_tag="VIU37_10980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014527.1"
                     /translation="MPRIRPLVALCAVLLLAGCSAAGSASTSTSASAPSVGQKSSVLP
                     VIISSELATGTNRFLFSFLDATSNSPVGAPDRTASVAFTGPGGQTVAPADGTFIWAIE
                     NVSGIYVSTVDFPASGDWVAHFTTAAAGKPAEQVDFQFQVLDKKHVIVPGDKAPSVDT
                     PTLASVGGDVAKLSTDAHPDKAFYETSVAAALAAHKPFVLVFATPKFCQTQTCGPTLD
                     KVKPIAAAHPDVTFINVEPYQLKDDQGQLQPVLDANGQLQTVPATDAYGLLSEPYVFV
                     VGGDGIVKASFELIFTPAEIDQALAGLK"
     gene            complement(2658..>3006)
                     /locus_tag="VIU37_10985"
     CDS             complement(2658..>3006)
                     /locus_tag="VIU37_10985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014528.1"
                     /translation="GLLIAVAALVVAVVSAVGQAPSTETGLVVAVDSSGLTDVRGFSI
                     RTGDGRTVAFRIGVLENGAQFPPGHLLEHAATGVRVVVTYRRENGELVAIRLEDAPTG
                     SGAPTGSAAPSPT"
BASE COUNT          477 a         1072 c         1072 g          385 t
ORIGIN      
        1 caggacgagc gagatggcga ccatcaggac cgcgtacagg gcgatctgcc gggtcgtctc
       61 ggggatcccc ttgaccacgg ggagcatcgg cacgcccgcc gccgcgtagt ccttgcggat
      121 ccggagcgac agcgcccaga agtgtggcgg cgtccagtag aagacgaggg cgaacaggag
      181 caacgccggg acgcccacgc tcccggtcac ggccgcccag ccgatgaccg gtggcagggc
      241 gccggccgca ccgccgatga cgatgttctg ggtggtcgtt cgcttgagca ggaccgtgta
      301 gacgaccacg tagaagccga tggccagcag cgtcaggaag gccgcggtca ggttcacgaa
      361 ccaggccatc atcgcgatgg agatggcccc caggacgatt ccgaagacga ccgcacgctc
      421 gggctccacc tggtgggcag ggagcggtcg ccggcgggtc cgggtcatca gcaggtcgat
      481 gtcgcgatcg aggtagcagt tgatcgcgtt ggcgctgccc gcggccagcg tcccgccgag
      541 catcgtccag aacacgatcg caccccagcc cgcccagtcg accgcacccc gcaggccgcc
      601 gacccccggc aggtcgcggg tggccaggac catggccggt acggtggtga cgagcagcag
      661 ctcgatgatc cgcggcttgg tcagggcgat ataggcgcgg accgtgtcgc ccgtcgaccg
      721 gggcggcgag gagacgtccg ccccggattc tggcccggcg atgacgccgg tcgtcgagcg
      781 ggcgctgtag tagctcgtca ccgtcagccc ggccatcgtc gcccagatca ccgcgccgag
      841 tgccaggtgc agggtctgcg tccattcggc catgcgggtc agcacctggg cgcccccgat
      901 cacgacctgg agcccgaaca gcgcggccgc accgaccgac agccggacca gcgtgcgccg
      961 gtcccgctgc gtacgccagg cggcgacggc gacggccacc acgatcaacc cgaccacggc
     1021 ggcgacccag cggtgcagga cgtgggcacc cgtcacgtcg gtgaccggtg gggccagcgt
     1081 gccgcccatc agcggccagt ccgggaagac gagggcggag tcggtggccg tgacctggga
     1141 gccgaacagg aggagcgcga acgtcgcggc ggccgcgaac gccgccagca gcgtgaagcg
     1201 ctggctcgtg ccgcgtctcg gcaggtgggc cgggtagccc gcccggacgg tcaggaacac
     1261 cagcagcccg acgagggcca tcgcgctcgc caggtgcgcc gtgaccgatt cgccgctgtt
     1321 gccgaggcgg accgtctcgc ggccgagcca cgcctggaac ccgacgagca cgaccgcacc
     1381 gagggtgggc cagaggatcg agatccggga ccgatggtcg cgcacggcga gcacggccag
     1441 cgccaggatc tcgaagccga tcaccgccgc gatggtccgg tggacccact cgatccaggc
     1501 cttgaagtca ccggccggcg ggaggatctg cccgtagcag aacggccagt cggggcagcc
     1561 gagcccggat tcggtcgcgc gcacgacgac gccgatcgtg accagcccga gggcggtcgc
     1621 gagacacagc gcggcgagct tctggaagcg gttcacgagg cgccattcta tgcgtggggc
     1681 ggcttggccg ccgtgcgccg cgccacgcgc tcggcgggcg gttcgggacg ctcggcgcta
     1741 cgctgtcgcc atgccacgca tccgacccct ggtcgccctg tgcgccgtcc tcctgctcgc
     1801 cggttgctcg gcggcgggat cggcgtcgac gtccacctcg gcgtccgccc cgtcggtcgg
     1861 ccagaagtcg tccgtcctcc cggtcatcat ctcgtccgag ctggcgaccg gcaccaaccg
     1921 gttcctgttc tcgttcctcg acgcgacgag caattcgccg gtcggggccc cggatcggac
     1981 ggcgagcgtc gcgttcaccg gaccgggcgg ccagaccgtc gcgccggcgg acgggacgtt
     2041 catctgggcg atcgagaacg tgagcggcat ctacgtctcc acggtcgact tcccggcctc
     2101 cggcgactgg gtcgcccatt tcacgacggc agccgcgggc aagcccgccg agcaggtcga
     2161 cttccagttc caggtcctcg acaagaagca cgtgatcgtg ccgggcgaca aggcgccgtc
     2221 ggtcgacacg ccgacgctcg cctcggtcgg cggcgacgtc gccaagctgt cgaccgacgc
     2281 gcacccggac aaggcgttct acgagacgtc ggtggccgcg gcgctcgccg cccacaagcc
     2341 gttcgtgctc gtcttcgcga cgccgaagtt ctgccagacc cagacgtgcg ggccgacgct
     2401 cgacaaggtc aagcccatcg ccgcggccca tccggacgtg acattcatca acgtcgagcc
     2461 gtaccagctc aaggacgacc agggccagct ccagccggtc ctcgatgcca acgggcagct
     2521 gcagaccgtg cccgcgaccg acgcgtatgg actcctgtcc gagccctacg tcttcgtggt
     2581 cgggggagac gggatcgtca aggcgtcgtt cgagctgatc ttcaccccgg ccgagatcga
     2641 ccaggcgctg gcggggctca agtaggcgag ggtgccgccg acccggtcgg cgctcccgac
     2701 ccggtcggcg catcttccag ccggatcgcg acgagctccc cgttctcgcg tcgataggtc
     2761 accacgaccc tgacgccggt cgccgcgtgc tccaggagat ggccgggggg gaactgggcg
     2821 ccgttctcga ggacaccgat ccggaaggcg acggtccggc cgtcgccggt ccggatggag
     2881 aagccgcgga catccgtcag gccggacgaa tcgacggcga cgaccaggcc ggtctccgtg
     2941 ctcggcgcct gcccgacggc cgagaccacc gcgacgacga gggcggcgac ggcgatgagc
     3001 agcccg
//
LOCUS       DATDDI010000755         4091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_681964, whole genome shotgun sequence.
ACCESSION   DATDDI010000755 DATDDI010000000
VERSION     DATDDI010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681964"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..449
                     /locus_tag="VIU37_10990"
     CDS             72..449
                     /locus_tag="VIU37_10990"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY6014529.1"
                     /translation="MPKHVPDLPGAATTLPFSRVVEANGFVFLAGQVGDAPDSDGAVP
                     GGIEAETRQMLDNVGRLLHAVGLDYRDVVKATVYLRDFGEFAAMNAVYREYFPTEPPT
                     RATVGVTALARDFRVEIEVIATR"
     gene            complement(465..1277)
                     /locus_tag="VIU37_10995"
     CDS             complement(465..1277)
                     /locus_tag="VIU37_10995"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY6014530.1"
                     /translation="MVVLVVALTGILVGSIAGPARTLASDPPQLSRFMQAVAQVESHG
                     NHTALNKKSGAYGRYQIMPDNWRAWARRYLGNANARPTPRNQERVARAKMAELYRWLG
                     SWERVSYWWLTGSSRTSSWSHAARSYVTRVMAIFGGVETGKPSVEAARHYSERSSTID
                     YSGSWHVARAASYAGGRVSYASNPGARASIAFTGSRIAWYGPVGPTRGKARIVVDGKI
                     AKTVDLERPSFRPRALLYSRSWTTPGRHSLAIEVLSTRGHKLVAIDELVVTP"
     gene            complement(1528..2052)
                     /locus_tag="VIU37_11000"
     CDS             complement(1528..2052)
                     /locus_tag="VIU37_11000"
                     /inference="COORDINATES: protein motif:HMM:NF042734.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HEY6014531.1"
                     /translation="MSLRCFLGHGASGSAASMAPFVAGLRRRGVDAVAIDLPRRKAED
                     AIPAFHLAVPSGRDVAVGGHSYGGRVASLAAAEPDAPYRALVLFSYPLHPPGSPERTA
                     ARVAHWPAIRCPVLLLSGEADPFARIELLRTSVGLLERAELVTYPRLGHTLKPVLEDA
                     LDRAAAFLLGVAGD"
     gene            2167..3537
                     /locus_tag="VIU37_11005"
     CDS             2167..3537
                     /locus_tag="VIU37_11005"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HEY6014532.1"
                     /translation="MTPRTVRQHRVPGFRRTAIAALVGAVACVSLSGIADLPPAVHAE
                     IAPPTPGSAPSPLPDSVTFYGRGYGHGVGMSQYGARGRALAGQDAPTILAHYYQGTTL
                     GQIDPATPIRVLVLSRWTATDAHPLQIAGAVAPWTIDGIGAAFPPDARVRLAWSTAMT
                     PAGWRLTVAGVDGSLLFDGPAPTTTELVMRPGSIDGRLQVVSKATRFNVYRGNLHLVL
                     TPGSARVSVVDEVPLDAYLGGVVPVEMPPTWPAAALQAQSVAARSFAARRLHPATSFY
                     DVPDTSASQVYRGVVAEKPQTNAAIAATAGQVLLSGSSIINALFDSTGGGATESNENV
                     YTTATGRVVARPVSYLRGSSDRAPDGTAYDASSPYATWSTRTYARSQLSAWFAADART
                     NVGDLVALDLHDRGVSGRLISVTLIGSAGTRRVSGEVFRAVFNKGRPSTDPGLLSTLF
                     DLAPIP"
     gene            3556..>4091
                     /locus_tag="VIU37_11010"
     CDS             3556..>4091
                     /locus_tag="VIU37_11010"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005934810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEY6014533.1"
                     /translation="MIDPRPRCSWASADGPSPDLLMVAYHDDEWGVPTHDDVELFERL
                     ALESFQAGLSWSTILRKRDAFRGAFRGFDPAVVAAFDDADRDRLMADAGIVRNRAKID
                     ATIGNAAAQLRVAEAFGSFDRYLADRVPGPPARLAADARSGQIPSTTPVSDALSLDLK
                     RRGFRFVGSTIVYAFMQSV"
BASE COUNT          558 a         1522 c         1450 g          561 t
ORIGIN      
        1 cttcggcccg ggctgttggc gtccggacgg cccgctaccc tgaacgcccc accgaacacg
       61 gaggagacag gatgcccaag cacgtacccg acctgcccgg cgccgccacc acgctcccgt
      121 tcagccgggt cgtcgaagcc aacgggttcg tcttcctggc cggccaggtc ggcgacgccc
      181 cggacagcga cggcgcggtg cccggcggga tcgaggccga gacccgccag atgctcgaca
      241 acgtgggcag gctgcttcac gcggtcggcc tcgactaccg cgacgtcgtc aaggccacgg
      301 tctatcttcg cgacttcggc gagttcgcgg ccatgaacgc cgtctaccgc gaatacttcc
      361 cgaccgagcc gccgacgcgc gccaccgtcg gggtcaccgc cctggcgcgc gacttccggg
      421 tcgagatcga ggtgatcgcg acccgctgat ccgggccggt gccgttaggg agtcacgacc
      481 agctcgtcga tcgccacgag cttgtgtccg cgcgtcgaca ggacctcgat cgcgaggctg
      541 tggcggccgg gcgtggtcca gctgcggctg tagaggagtg cccgcggccg gaacgacggc
      601 cgctcgaggt cgaccgtctt cgcgatcttg ccgtcgacca cgatccgggc cttgccgcgg
      661 gtggggccga ccggcccgta ccaggcgatc cggctgccgg tgaaggcgat cgacgcccgc
      721 gccccggggt tcgacgcgta gctgacgcgg ccgcccgcat agctcgccgc ccgggcgacg
      781 tgccaggaac ccgagtagtc gatcgtggag ctgcgctccg agtagtggcg ggccgcctcg
      841 accgacggct tgcccgtctc gacgccaccg aagatcgcca tcacgcgggt gacgtacgag
      901 cgcgcggcgt gcgaccagga cgaggtcctg gacgagccgg tcagccacca gtacgagacg
      961 cgctcccagc tgccgagcca gcggtagagc tctgccatct tcgccctggc gactcgctcc
     1021 tggttgcggg gggtcggcct ggcgttggcg ttgccgaggt agcgacgcgc ccaggcgcgc
     1081 cagttgtccg gcatgatctg gtaccggccg taggccccgc tcttcttgtt cagggcggtg
     1141 tggttgccgt gcgactcgac ctgtgcgacg gcttgcatga accggctcag ctggggcggg
     1201 tcggaggcca gtgtccgggc cgggcccgcg atgcttccga cgaggatgcc cgtgagggcg
     1261 acgacgagga ccaccatccg gcggccagac gggactcgca atggagctcc ttcctgccag
     1321 gacggcgcgg tgagcgcgcc gaacgtaggc tcggtcgaag ccgggcaggg aaacggcacg
     1381 agggccgcgg cctgggcaca ccggcggcga cgagggctgc gaggccgggc ggatcgtggc
     1441 acccggtctg gggtcggtca ggatacgccg cccgtcaacc cggcgacaag gggcgcgatg
     1501 gtcccgggag ccgggggcgc gacccggtca gtcgcccgcc acgcccagca ggaacgccgc
     1561 cgcccggtcg agagcgtcct cgaggacggg cttgagggtg tgcccgaggc gcggataggt
     1621 caccagctcg gcgcgctcca gcaggccgac ggacgtccgc aacagctcga tccgggcgaa
     1681 cggatccgcc tcgcccgaga gcagcaggac cgggcagcgg atggccggcc agtgggcgac
     1741 gcgggccgcg gtccgctccg gggatccggg gggatggagc gggtagctga acaggaccag
     1801 ggcccggtag ggcgcgtccg gctcggccgc ggccaggctg gcgacccgcc cgccgtacga
     1861 atggccgccg accgctacgt cccgccccga ggggaccgcc agatggaacg ccgggatcgc
     1921 gtcctcagcc ttgcggcgag gcaggtcgat ggccaccgcg tccacgccgc gacgacgcag
     1981 cccggccacg aacggggcca tgctggccgc cgatccgctc gccccatggc cgaggaagca
     2041 tcgcaggctc acccgggcag cgtacccggg atggccccat tggcggcgct ggtcatggtc
     2101 ccgtcgggtc atggccgtgg actggatgca ccatgatgct gggtgaccac cgcatcgagg
     2161 gcgtgcatga caccgcgcac ggtcaggcag catcgggttc ccgggttccg gcgaacggcc
     2221 atcgcggcgc tcgtcggcgc cgtcgcctgt gtgtcgctct cgggtatcgc cgacctgccg
     2281 ccggcggtcc atgccgagat cgcaccgccc acgcccgggt cggcgccctc gccgctcccc
     2341 gattcggtca cgttctacgg ccgtggctac ggccacggcg tcgggatgtc ccagtacggg
     2401 gcacgcggcc gggcgctcgc cgggcaggac gccccgacca tcctcgccca ctactaccag
     2461 ggcaccacgc tgggccagat cgatcccgcc acgcccatcc gcgtgctcgt cctcagccgc
     2521 tggaccgcga ccgacgccca cccgctccag atcgccgggg ccgtcgcgcc gtggacgatc
     2581 gacgggatcg gcgccgcatt cccgccggat gcacgagtcc ggctcgcctg gtccaccgcg
     2641 atgacgcccg cgggctggcg cctgacggtc gccggggtcg acggcagcct cctgttcgac
     2701 ggccccgcgc ccaccacgac cgagctggtg atgcgtccgg gctcgatcga cggacggctc
     2761 caggtcgtct ccaaggcgac ccgcttcaac gtctaccgcg gcaacctcca cctcgtgctc
     2821 acccccggct cggcacgggt gtccgtcgtc gacgaggtgc cactcgatgc ctacctcggc
     2881 ggagttgtac cggtcgagat gccgccgacc tggcccgcgg cggccctcca ggcgcagtcg
     2941 gtggccgccc gctcgttcgc ggcccgccgg ttgcaccccg ccacctcgtt ctacgacgtc
     3001 ccggacacgt cggcctcgca ggtctaccgc ggggtcgtgg ccgagaagcc gcagaccaac
     3061 gcggcgatcg cggcgacggc cggccaggtc ctgctgagcg gatcgtcgat catcaacgcg
     3121 ctgttcgatt cgaccggcgg cggcgccacc gagtcgaacg agaacgtcta caccaccgcg
     3181 accgggcgcg tggtcgcccg ccccgtgagc tacctgcgcg gatcgagcga ccgggccccg
     3241 gacgggaccg cgtacgacgc cagctccccg tacgccacct ggtcgacccg gacgtacgcg
     3301 cgaagccagc tgtcggcctg gttcgccgcc gacgcccgga ccaacgtcgg cgacctcgtc
     3361 gcactcgacc tccacgaccg cggcgtctcg ggccgattga tcagcgtcac gctgatcgga
     3421 tccgcgggca cgcggcgcgt gtccggcgag gtcttccggg ccgtcttcaa caagggccgc
     3481 ccgtccaccg atccgggcct gctcagcacc ctgttcgacc tcgcgccgat cccctgaccg
     3541 ggctatcgtg ggccggtgat cgatccccga ccgcgctgct cctgggcctc cgccgacggc
     3601 ccgtcgcccg acctcctgat ggtcgcctat cacgacgacg aatggggcgt gccgacacat
     3661 gacgatgtcg agctgttcga gcggctcgcg ctcgagtcgt tccaggccgg gctgtcgtgg
     3721 tcgacgatcc tccgcaagcg cgacgcgttc cgtggcgcgt tccgcggctt cgatcccgcg
     3781 gtcgtggcgg ccttcgacga cgccgaccgg gaccggctga tggccgacgc cgggatcgtc
     3841 cgcaaccggg ccaagatcga cgcgaccatc gggaacgcgg ccgcgcagct ccgcgtcgcc
     3901 gaggcgttcg ggtcgttcga ccggtacctg gcggaccggg tgccgggccc gccggcgcgc
     3961 ctcgccgccg acgcccggag cgggcagatc ccgtccacga cgccggtctc cgatgcgctc
     4021 tcactcgacc tgaagcggcg cgggtttcgg ttcgtcggct cgacgatcgt ctacgcgttc
     4081 atgcagagcg t
//
LOCUS       DATDDI010000756         1600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_78943, whole genome shotgun sequence.
ACCESSION   DATDDI010000756 DATDDI010000000
VERSION     DATDDI010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78943"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VIU37_11015"
     CDS             complement(<1..589)
                     /locus_tag="VIU37_11015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014534.1"
                     /translation="MTPTANPLHSGSSGPISIAASPTPSVVSAASGFAPAGLAIDPAR
                     ATRRAIGWQAPRWLAMRSLQHDPLVPLAVALALAVALVDLLDGPADVRPSLVLAIVFL
                     ALQTALSPVRRAHPSMPLLRFALCLAFLIGASLAIDTRGGWPLLALAIPVVALAAAFG
                     GKSTWVAVVAVAVTLVPVGLPSTAGDVRRRLIALAI"
     gene            complement(678..1187)
                     /locus_tag="VIU37_11020"
     CDS             complement(678..1187)
                     /locus_tag="VIU37_11020"
                     /inference="COORDINATES: protein motif:HMM:NF016162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEY6014535.1"
                     /translation="MAGTAPPPPRIEPGPGQESVWDYPRPPRVEPVPERIRVVVDGVT
                     IAESTRALRVLETAGAPVYYLPPDDVRLDLLAPSPHSTFCEWKGDATYRSYEARDRRI
                     PNVAWSYEAPLPGYEAIRGYLAFYAQLVDEAWVGDERATPQPGRYYGGWVTSRVVGPF
                     KGEAGTAGW"
     gene            complement(1187..>1600)
                     /locus_tag="VIU37_11025"
     CDS             complement(1187..>1600)
                     /locus_tag="VIU37_11025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014536.1"
                     /translation="IKPGWIRVNFNYFLSEPVVEYILDAVDLAASEGWRLMPQYRFES
                     ATGLWRHVRGQGEPPMSLHDIDYTSGSMRYVPHSHREPETVLAGYLREARAILAAAPD
                     GRPVPATALTPDVEALRWFWLPEEIAADTAFAGRR"
BASE COUNT          238 a          552 c          633 g          177 t
ORIGIN      
        1 cgatcgcgag cgcgatcagg cgccgccgga cgtcgccggc ggtcgacggc agcccgaccg
       61 ggacgagcgt caccgcgacc gcgacgacgg cgacccaggt cgacttgcca ccgaaggcgg
      121 ccgcgagcgc gacgacaggg atggccaggg ccaggagcgg ccagccgccg cgggtgtcga
      181 tggcgaggct ggcgccgatc aggaacgcga ggcacagcgc aaaccgcagg agcggcatcg
      241 acggatgggc gcgccggacc ggtgacaggg ccgtctggag cgcgaggaac acgatcgcga
      301 ggacgagcga cggccggacg tcggccggcc cgtccagcag gtcgaccagg gcgacagcga
      361 gggccagcgc gacggcgagc gggacgagcg ggtcgtgctg gaggctgcgc atcgccagcc
      421 agcgcggcgc ctgccagccg atggcccggc gcgtggcccg ggcgggatcg atggccaacc
      481 cggccggcgc gaaccctgaa gcggccgaga cgacgctcgg cgttggggac gcggcgatcg
      541 agatcggccc ggaggaaccg gagtggaggg ggttggcggt cggggtcact ctctggccag
      601 gctgggatgc ggacgctcgg ggagactggc gcctccaggc accggcgctc tatcccccgg
      661 cagtaccagc gagccggcta ccagccggcc gtgccggcct cgcccttgaa cggccccacg
      721 accctcgagg tcacccagcc gccgtaatag cggcccggct gcggcgtcgc ccgctcatcg
      781 ccgacccacg cctcgtcgac gagctgggcg tagaacgcca ggtagccccg gatggcctcg
      841 tagcccggca gcggcgcctc gtatgaccac gcgacgttcg ggatgcggcg atcgcgggcc
      901 tcgtagctgc ggtaggtcgc gtcgcccttc cactcgcaga acgtcgagtg cgggctgggc
      961 gccaggagat cgagccggac gtcgtccggc gggaggtagt agacgggcgc gccggccgtc
     1021 tcgagcacgc gcagggcccg ggtcgactcg gcgatcgtca cgccgtcgac gacgacccgg
     1081 atacgctccg ggaccggctc gacccgaggc ggccgggggt agtcccagac cgactcctgg
     1141 cccggcccgg gctcgatccg cggcggcgga ggcgcggtcc cggccatcag cgccgtccgg
     1201 cgaacgcggt gtcggccgcg atctcctcgg gcagccagaa ccagcggagg gcctcgacgt
     1261 ccggtgtcag ggccgtggcg ggaacaggcc ggccgtcggg cgcggcagcg aggatcgcgc
     1321 gggcctcgcg gaggtacccg gcgaggaccg tctcgggctc gcgatggctg tgcgggacgt
     1381 agcgcatcga gccgctcgtg tagtcgatgt cgtggaggct catcggcggc tcgccctggc
     1441 cgcggacgtg gcgccacagc ccggtggccg actcgaagcg gtactggggc atgaggcgcc
     1501 agccctcgga cgccgcgagg tcgaccgcgt cgaggatgta ctcgacgacc ggttcgctca
     1561 ggaagtagtt gaagttcacc cggatccagc cgggcttgat
//
LOCUS       DATDDI010000757         3326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_515775, whole genome shotgun sequence.
ACCESSION   DATDDI010000757 DATDDI010000000
VERSION     DATDDI010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515775"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..851
                     /locus_tag="VIU37_11030"
     CDS             <1..851
                     /locus_tag="VIU37_11030"
                     /inference="COORDINATES: protein motif:HMM:NF013583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="R3H domain-containing nucleic acid-binding
                     protein"
                     /protein_id="HEY6014537.1"
                     /translation="RGPVSEGGLAGMLPGERFASPPAAGRLGSHPAEAPFVAGEIADR
                     GPLERGAVPTAAETRAREARELERQKAWRDQASRALTALKAEEGTGPINAEELEDDDL
                     DKLPLGAEEGPDGGTVLVPGGSPLPTLRVLPQGISRKRLEQAVRDLQLPVVIARDVDE
                     ADVVMTLRNEYKQKTPMLREAEERSMPIYVLKSNTIPQMQSSLTSIFSLEIDPREAAM
                     RETEDAIEAVLQSSEAVELSPQNAYIRRLQHQLAERANLLSRSRGREPYRRVRLYPDA
                     ARSGWR"
     gene            complement(927..1709)
                     /locus_tag="VIU37_11035"
     CDS             complement(927..1709)
                     /locus_tag="VIU37_11035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014538.1"
                     /translation="MLDLRHLTRLTALAVATGLLVAACGGGTASSSPAASSESSTAPS
                     VEAPSAEASEAPASEAPAESAEASLGALPTFDLKALGGAIPGLDSYRTSTSSGGKKQY
                     ESVVVTKPELSKAITVYDESSGAVSNRYVIIGKDAWSADGPDGAFTQIPGGTDAAGAL
                     LLAFDPAMFLGAFTQIPWAQAATNQGMEEKNGVQAHHARIDSTSLLGAAGGIPAGASI
                     DIWVADAGWLVAWEMTGFPDNADFSIQVTNVNDPSNKVEKPS"
     gene            complement(1775..3034)
                     /locus_tag="VIU37_11040"
     CDS             complement(1775..3034)
                     /locus_tag="VIU37_11040"
                     /inference="COORDINATES: protein motif:HMM:TIGR01976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase-like protein"
                     /protein_id="HEY6014539.1"
                     /translation="MPTFDVDTLRAEFPALARQQDGRPVVFLDGPGGTQVPQRVIDAV
                     VAYYRDTNANAGGAFVTSELSDAMALEGHAAVADFLGAASPDEIKFGANMSTLTLHVG
                     RSIGATLGPGDEIMVTTLDHEANVSTWQAMAADRGITVRTVDIHDDDVTLDLEDLESK
                     LNANTKLVAVGYASNAVGTVNPVREIVARAHEVGALAYVDAVAYAPHGPIDVQALDCD
                     FLVCSAYKWFGPHLGALYGKAEVLDRLPAFKVRPAHDRFETGTAAFESIAGTLAATDY
                     LRDVGRTYGDVAGAPGAAAASERRRELVAGMVAIRDYERGLVTRLIDGLEGIPGVTIH
                     GITDRARFDARVPTVSISIEGVHPRAAAEALGRLGIFTWDGDFYATGLIERLGKAESG
                     GVLRLGLVHYNTAAEVDRTLEALRDLH"
     gene            complement(3057..>3326)
                     /locus_tag="VIU37_11045"
     CDS             complement(3057..>3326)
                     /locus_tag="VIU37_11045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014540.1"
                     /translation="DNTFALSEIVIGPQGVFEAARLTGTNRGPWAGAPASGLPLSLEV
                     LILFPWDPVSERFAGERIWFDRGAIGEGGRTGETRPQGAFGYAQE"
BASE COUNT          483 a         1159 c         1211 g          473 t
ORIGIN      
        1 cccgtggccc cgtctcggag ggcggcttgg ccggcatgct cccgggtgaa cggttcgcgt
       61 cgccccctgc cgcgggacgc ctcgggtcgc acccagcgga ggcgccgttc gtggccggcg
      121 agatcgccga ccgcgggccg ctggagcgcg gtgcggtgcc gaccgcggcc gagacccgcg
      181 cccgcgaggc ccgcgagctg gagcgtcaga aggcgtggcg cgatcaggcc agccgtgccc
      241 tcaccgccct gaaggcagag gaggggaccg gcccgatcaa cgccgaggag ctcgaggacg
      301 acgatctcga caagctcccg ctcggcgccg aggaagggcc ggatggtggg acggtcctcg
      361 tcccgggcgg atcgccgctg ccgacgctgc gcgtcctgcc gcaggggatc agccgcaagc
      421 ggctggaaca ggcggtccgc gacctccagc tgccggtggt gatcgcccgc gacgtcgacg
      481 aggcggacgt ggtgatgacc ctgcgcaacg agtacaagca gaagacgccg atgctccgcg
      541 aggccgagga acggtcgatg ccgatctatg tcctcaagag caacacgatc ccccagatgc
      601 agtcgagcct gacctcgatc ttctcgctcg agatcgatcc gcgcgaggcc gccatgcgcg
      661 agaccgagga cgccatcgag gccgtcctcc agtcgtccga ggcggtcgag ctgtcgccgc
      721 agaacgcgta catccggcgg ctgcagcacc agctggccga acgggcgaac ctcctgtcgc
      781 gatcccgcgg ccgcgagccg taccggcggg tgcggctcta tccggacgcg gcgaggagcg
      841 gctggcgctg agcgagcggg cgccgggccg agcccggcgc cttcatggcc cgcggcgggg
      901 gcgggtgccc agatccgcct cggtcgtcag ctcggcttct cgaccttgtt ggacgggtcg
      961 ttgacgttcg tgacctggat ggagaagtcg gcgttatccg ggaagccggt catctcccag
     1021 gcgacgagcc agcccgcgtc ggcgacccag atgtcaatgg aagcgccagc cggaatgcct
     1081 ccggcggcgc cgagcaggga tgtcgagtcg atcctggcgt gatgcgcctg gaccccgttc
     1141 ttctcctcca tgccctggtt ggtggcggcc tgcgcccatg ggatctgcgt gaaggcaccg
     1201 aggaacatgg ccggatcaaa ggcgagcaac aaggctccgg cggcgtcagt tccacccgga
     1261 atctgcgtga aggcgccgtc cggtccgtcc gcgctccagg cgtccttgcc gatgatcacg
     1321 tatcggttgg agacagcgcc ggacgactcg tcgtaaacgg tgatcgcctt cgacagttcg
     1381 ggcttcgtca cgacgacgct ctcgtactgc ttcttgccgc cgctgctcgt cgacgtgcgg
     1441 taggagtcga ggccgggaat ggccccgccc agcgccttga gatcgaacgt cggcaacgcg
     1501 cccagcgacg cctcggccga ctcggcaggg gcctcgctgg cgggtgcctc ggacgcctcc
     1561 gcggatggcg cctcgacgct cggcgcggtg gaagactccg agctggcggc cggtgacgac
     1621 gaggccgtac cgccgccaca ggccgcgacg agcagccccg tcgcgacggc cagcgcggtc
     1681 aggcgggtga ggtgacggag atcaagcatc tggtgtgccc ccagggtggg ccggtcggac
     1741 gccggcgcga ggcgatgatg gagcgggctg cgcctcagtg caagtcccgg agcgcctcga
     1801 gcgtccgatc cacctccgcc gccgtgttgt agtggacgag cccgagccgg agcacgccgc
     1861 ctgactccgc cttgccgagc cgctcgatca ggccggtcgc gtagaagtcg ccgtcccagg
     1921 tgaagatgcc gagccggccg agcgcctcgg cggcagcgcg aggatggacg ccctcgatcg
     1981 agatcgagac cgtcggcact cgtgcgtcga agcgggcccg gtcggtgatg ccatggatcg
     2041 tcacgccggg gatgccctcc aggccgtcga tcagccgggt gaccagcccg cgctcgtagt
     2101 cacggatcgc gaccatgccg gcgacgagct cccggcgccg ctcgctggcg gccgcggcac
     2161 ccggcgcgcc ggccacgtcg ccataggtcc ggccgacgtc gcggaggtag tcggtggctg
     2221 ccagcgtccc cgcgatcgac tcgaacgcgg ccgtgccggt ctcgaaccgg tcatgggccg
     2281 gtcgaacctt gaacgccggg aggcggtcga ggacctcggc cttgccgtac agcgcgccga
     2341 ggtgcgggcc gaaccacttg taggccgagc acaccaggaa gtcgcagtcg agcgcctgga
     2401 cgtcgatcgg gccgtgcggc gcgtaggcga ccgcgtcgac gtaggcgagc gccccgacct
     2461 cgtgggctcg ggccacgatc tcgcgcaccg ggttgaccgt cccgaccgcg ttgctcgcgt
     2521 agccgaccgc gacgagcttc gtgttggcgt tgagcttgga ttcgaggtcc tcgagatcga
     2581 gcgtcacgtc gtcgtcgtgg atgtcgacgg tccgcacggt gatgccgcgg tcggcggcca
     2641 tcgcctgcca ggtcgacacg ttggcctcgt gatcgagcgt ggtgaccatg atctcgtcac
     2701 cggggccgag cgtcgccccg atcgaccgcc cgacatgcag cgtcagcgtc gacatgttcg
     2761 ccccgaactt gatctcgtcc gggctggcgg cgcccaggaa gtcggcgacc gccgcgtgtc
     2821 cctcgagcgc catggcatcg ctcagctcgc tggtgacgaa ggccccgccg gcgttggcgt
     2881 tcgtgtcgcg gtagtacgcg acgacggcgt cgatgacgcg ctgcggtacc tgcgtcccgc
     2941 cggggccgtc caggaagacc accgggcgcc cgtcctgctg cctggcaagc gcggggaact
     3001 cggcgcgcag ggtgtcgacg tcgaacgtgg gcatggatcc tccagcgggc tgcgacctac
     3061 tcctgagcgt acccgaacgc gccctgggga cgagtctcgc ccgttcgccc gccctcgccg
     3121 atcgcgccac ggtcgaacca gatccgctcg ccggcgaacc gctcgctcac cgggtcccac
     3181 gggaagagga tcaggacctc gaggctgagc ggcaggccgg acgcgggcgc gccggcccac
     3241 ggaccccggt tggtgccggt gagcctggca gcctcgaaga cgccctgcgg gccgatgacg
     3301 atttccgaca gcgcgaaggt gttgtc
//
LOCUS       DATDDI010000758         2437 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_79097, whole genome shotgun sequence.
ACCESSION   DATDDI010000758 DATDDI010000000
VERSION     DATDDI010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79097"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..435)
                     /locus_tag="VIU37_11050"
     CDS             complement(<1..435)
                     /locus_tag="VIU37_11050"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEY6014541.1"
                     /translation="MNPPSPGSTTGTVAIVMAAGLGTRMRSATPKVLHPLCGRPMLAY
                     VLDAWAATADGAASGPPVVVYSPSVEAVVAAFDGQATFALQEEPRGTGDAVRAALAAV
                     PEAAHAWSASKRSRKRTTSTSTSHATSTAKSPRTCRTSKDTSK"
     gene            complement(569..955)
                     /locus_tag="VIU37_11055"
     CDS             complement(569..955)
                     /locus_tag="VIU37_11055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY6014542.1"
                     /translation="MTRRAISTTGAPAAIGPYSQAIATEGLLFTAGQAALDPATGQLV
                     EGGIEPETERVLANLTSVLDAAGCSWGDVVKTTIFLVDMADFATVNAIYGRYMSDPPP
                     ARSTVAVAALPKGARVEIEAVARLRG"
     gene            complement(952..1959)
                     /locus_tag="VIU37_11060"
     CDS             complement(952..1959)
                     /locus_tag="VIU37_11060"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014543.1"
                     /translation="MTGPAPDPTRRLMPVVRLAPAKLNLTLAVIGRRPDGSHVLHSVF
                     VPLALADRLSLSPAAAGPDTLHVAGFDAGPVENNLVLRAIAATRFAVGGGWPGGPGPA
                     PSLAVRLEKHIPVAAGLAGGSSDAAAAMDGALEAWGAELVPDARHAIAARLGSDVPFF
                     LAGGPALVEGRGESVVPLLGLGAGPGVLLVTPAVPVATPEVFAMFDALGGRGSGSTRM
                     SSAHLAEELRSGLSAADLVARAGALTVANDLLQAALVFVPELVPFRRALSRLLARPIG
                     LSGSGPTLWALYPSESEATLAADAVRAAVRDGSLSVPGSAAPFVTATRILTGRHEERE
                     P"
     gene            complement(1956..>2437)
                     /locus_tag="VIU37_11065"
     CDS             complement(1956..>2437)
                     /locus_tag="VIU37_11065"
                     /inference="COORDINATES: protein motif:HMM:NF012616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rRNA adenine N-6-methyltransferase family
                     protein"
                     /protein_id="HEY6014544.1"
                     /translation="LGRAPRPRRAVLMVQREVAERIAAPPGKMSYLSVFVQYHARVRI
                     AFGVPPTAFEPEPAVESAVIVVEPYDADDRLDPDAEDELWRLVQAAFRERRKMIHNVL
                     SRQLPLDAGRVATALAAAAIDPDRRPQTLAVGEWLALREAIGPIGPDRRGRSGEPPS"
BASE COUNT          339 a          857 c          944 g          297 t
ORIGIN      
        1 cttcgaggtg tccttcgatg tcctgcaagt cctcgggctc ttggctgtcg atgtagcgtg
       61 ggaggttgag gttgaagtcg ttctttttct cgatctcttc gacgctgacc atgcgtgcgc
      121 cgcctcgggg accgccgcca gggcggcccg gaccgcgtcg cccgtcccgc gcggctcctc
      181 ctggagcgcg aacgtcgcct gtccgtcgaa cgccgccacg acggcctcga ccgacggcga
      241 gtagaccacg accgggggtc cagacgcagc accgtcggcg gtcgcggccc aggcgtcgag
      301 gacgtaggcg agcatcgggc ggccgcacag cggatggagc accttcggcg tcgccgagcg
      361 catccgcgtg ccgaggcccg cggccatgac gatggcgacg gtgcccgtcg tcgacccggg
      421 acttgggggg ttcacgaggg gtcgggcgcc gtggagcggc ggaggtcgcc gtcgagtcgg
      481 tcgcgtcccg gcgaagatgg gtcagcagtc atgagtgggt cggcgcatcg taggtgggcc
      541 tcgcggcggg tgtcaaccga ggccacggtc agccgcgcag cctggcgacg gcctcgatct
      601 cgacccgtgc gcccttcggc agcgctgcga cggcgaccgt ggaccgggcc ggcggcgggt
      661 cggacatgta ccggccgtag atcgcgttga ccgtggcgaa gtcggccatg tcgacgagga
      721 agatcgtggt cttgacgacg tcgccccacg agcagccggc cgcgtcgagc acggaggtga
      781 ggttggccag cacgcgctcg gtctcgggtt cgatgccgcc ctcgacgagc tgtccggttg
      841 cggggtcgag cgccgcctgg ccggcggtga acagcaggcc ctcggtggcg atcgcctggc
      901 tgtacggccc gatcgcggcc ggcgcgcccg tggtcgagat ggctcggcgg gtcatggctc
      961 cctctcctcg tgtctgccgg tcaggatcct ggtggcggtg acgaacggcg cggccgagcc
     1021 cggcaccgac aggctgccgt cgcggactgc ggcccggacc gcgtcggcgg caagcgtggc
     1081 ttccgactcg gaaggataga gcgcccacag cgtcgggcca gagccggaca gcccgatcgg
     1141 gcgcgccagc aggcggctga gcgcgcgccg gaacgggacg agctcgggaa cgaagacgag
     1201 cgcggcctgg agcaggtcgt tggcaacggt cagggcgccg gctcgcgcga ccaggtcggc
     1261 cgcgctcagc ccggatcgga gctcctcggc gagatgggcc gacgacatcc gggtcgaccc
     1321 gctgccgcgg ccgcccaacg cgtcgaacat cgcgaagacc tccggcgtgg cgaccgggac
     1381 ggccggcgtc accagcagga caccgggacc ggcgccgagg ccgagcagcg gcacgaccga
     1441 ctcgccgcgg ccctcgacga gggccgggcc accggccagg aagaacggga cgtccgaccc
     1501 gagccgcgcg gcgatcgcgt ggcgcgcatc cggcaccagc tccgcacccc acgcctcgag
     1561 cgcaccgtcc atcgccgcgg cggcgtccga ggagccaccg gcgagcccgg cggccaccgg
     1621 gatgtgcttc tcgagccgta cggccagcga cggggcgggt cccgggccgc cgggccaccc
     1681 gccgccgacg gcgaagcgcg tcgccgcgat cgcccggagc acgagattgt tctccaccgg
     1741 accggcgtcg aagccggcca catgcagggt gtcggggccc gcggcggccg ggctcaggct
     1801 cagtcggtcg gccagcgcga gcggcacgaa gaccgagtgc aggacgtgag agccatccgg
     1861 ccggcgaccg atgacggcga gcgtgaggtt gagcttggcc ggagccaggc gcacgaccgg
     1921 catcaggcgg cgcgtcgggt cgggcgccgg gccggtcacg agggtggctc cccggaacgc
     1981 ccgcgacgat cgggcccgat cgggccgatc gcttcgcgca aggccagcca ctcgccgacc
     2041 gccagcgtct gcgggcgccg gtcgggatcg atggcggccg cggccagggc cgtcgcgacg
     2101 cggccggcat cgagcggcag ctggcgcgac aggacgttgt ggatcatctt gcgccgctcg
     2161 cggaaggcgg cctggaccag ccgccacagc tcgtcctcgg cgtcgggatc gaggcggtcg
     2221 tcagcgtcat agggctcgac gacgatcacc gccgactcga ccgcgggctc cggctcgaac
     2281 gcggtcggcg gcacgccgaa ggcgatccgg acgcgggcgt ggtactgcac gaacacggac
     2341 aggtagctca tcttcccggg cggtgcggcg atccgttcgg cgacctcgcg ctggaccatg
     2401 agcacggccc gacgcggacg cggcgctcgc ccgagca
//
LOCUS       DATDDI010000759         2917 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_16424, whole genome shotgun sequence.
ACCESSION   DATDDI010000759 DATDDI010000000
VERSION     DATDDI010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16424"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..807)
                     /locus_tag="VIU37_11070"
     CDS             complement(<1..807)
                     /locus_tag="VIU37_11070"
                     /inference="COORDINATES: protein motif:HMM:NF016995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HEY6014545.1"
                     /translation="MATPAAVSAASLRPDGLNVPARLGRGLWRLLTKVDFAVAQIIVL
                     ALLAVVGMTIKQLPDFAFRSATDYATALDDLHARYDPLLGSGVVDVLDRLSVFSIFRS
                     PWFSAGLVVLVVSIVVCTLDRTPKLWRGVREVRVEQPEPFFDPRLPDRAAMTGLTAEA
                     VRRVLRRNGLHVREATAADGRRFLYGDRHQYTKLATLLTHAGLVTFLVAAAVTSRLGD
                     EQGLVVPEGSSLTVQPIGTPGLLLVKNLDFEAPGFDTGQAADFTTDLAVYQ"
     gene            complement(828..2081)
                     /locus_tag="VIU37_11075"
     CDS             complement(828..2081)
                     /locus_tag="VIU37_11075"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6014546.1"
                     /translation="MSDPEPRFRGFSTRAIRAASRAPRIDQQPTSVPIYQTATFASSD
                     ADELGRVAADPRAGYAYSRISNPTTTALGDAYAELAGGEAGVALASGMGAIHAAFASL
                     LKTGDRVVAPLAIYGSTRAQLLRTFGGFGVRVDSVDTTDLDAVEAALSEAPTRVLYAE
                     TIANPTTYLADHAALAELAHRHGATYVVDNTFASPYVCRPLELGADLVVESATKFLGG
                     HSDVIAGVVAGSAARIADVTRVQIDTGATLGPLEAFLVLRGILTLAVRVERHARTAAG
                     LAAWLEAQPGVRSVLYPGLASHPQHDVAVRQFRPGVCGGMLAFEVDGGRAAGRTVIDA
                     LRLPELTASLGSVHTMVVHPPSTSHRQLSEADLERTGITPGLLRVSVGLEDLEDLEAD
                     FGEALAAAGRPADAERAPVPAVGAI"
     gene            complement(2078..>2917)
                     /locus_tag="VIU37_11080"
     CDS             complement(2078..>2917)
                     /locus_tag="VIU37_11080"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY6014547.1"
                     /translation="SPFFFAFPLIVAGGALVISPPITVVLAGAAALGYALGVVVGSAA
                     DTSLTAAAATVGVNLMALVLLAYASMVIAREQRRTRDAAIRLSTVDPLTGLFNRTFFF
                     AAIGREIARCARSGRGFCLLMMDLDDLKAINDRLGHHQGDRVLRGVGAVIAAGVRRID
                     TAARYGGDEFVVLLPETDPTGAFVLAEKIRRGVNAMTVDESTPGSRASLSIGVVSYPG
                     DGTTADELMISADEAMYASKRAGKDRVTGVSIPIRRNGRDQEMGGGQAAGAVGDSGVA
                     SAP"
BASE COUNT          425 a         1012 c         1123 g          357 t
ORIGIN      
        1 ctggtagacg gcgagatcgg tggtgaagtc ggccgcctgg ccggtgtcga agccgggcgc
       61 ctcgaagtcc aggttcttga ccagcagcag cccgggcgtc ccgatcggct ggacggtgag
      121 cgagctgccc tccggcacga ccaggccctg ctcgtcgccg agccgcgagg tgaccgccgc
      181 cgcgaccagg aaggtcacca ggccggcatg ggtcaggagc gtcgccagct tggtgtactg
      241 gtgccggtcg ccgtacagga atcgacggcc gtcggcggcg gtcgcctccc gcacgtggag
      301 gccgttccgg cgcagcacgc gccgaacggc ctcggcggtc agcccggtca tcgccgcgcg
      361 gtcagggagg cgcggatcga agaacggctc gggctgctcg acgcgtacct cgcgaacgcc
      421 ccgccacagc ttcggcgtcc ggtccagggt gcagaccacg atcgagacga ccagcaccac
      481 cagcccggcg ctgaaccacg gcgagcggaa gatggagaag acgctcagcc ggtcgagcac
      541 gtcgacgacg cccgagccga gcagcgggtc gtagcgcgcg tgcaggtcgt cgagcgccgt
      601 cgcgtagtcg gtcgccgagc ggaaggcgaa gtcgggcagc tgcttgatgg tcatcccgac
      661 caccgccagc agggccagga cgatgatctg ggcgaccgcg aagtcgacct tggtcagcag
      721 ccgccagagg ccgcgaccga gacgggcggg aacgttgagg ccatcgggcc ggagtgatgc
      781 ggccgagacg gccgccgggg tcgcgatggc cggacctcct ggccggccta gatcgcgccg
      841 acggccggga cgggcgcgcg ctccgcgtcg gcgggtcggc cggcggcggc cagggcctcg
      901 ccgaaatcgg cctccaggtc ctcgaggtcc tccaggccga ccgagacgcg cagcaggccg
      961 ggcgtgatcc cggtccgctc gaggtcggcc tcgctgagct ggcggtgcga cgtggacggc
     1021 gggtggacga ccatcgtgtg gacgctcccg agcgacgcgg tcagctccgg cagccggagg
     1081 gcgtcgatga ccgtccggcc ggccgcgcgg cctccgtcga cctcgaaggc gagcatgccg
     1141 ccgcatacgc cgggccggaa ctggcggacc gccacgtcgt gctgggggtg gctggcgagc
     1201 cccgggtaga ggacggaccg gaccccgggc tgggcctcga gccaggcggc gaggcccgcc
     1261 gccgtccggg cgtggcgttc gacgcggacg gccagggtca ggatcccgcg aaggacgagg
     1321 aaggcctcga gcgggccgag ggtcgccccg gtgtcgatct ggacccgggt cacgtccgcg
     1381 atccgtgccg cggagccggc gacgaccccg gcgatcacgt cgctgtggcc gccgaggaac
     1441 ttggtggcgg attcgacgac caggtcggcg cccagctcga gcggacggca gacgtacggc
     1501 gaggcgaacg tgttgtcgac gacgtaggtc gcgccgtggc gatgggccag ctccgcaagc
     1561 gcggcatggt ccgcgagata cgtggtcggg ttggcgatcg tctcggcgta gaggacacgg
     1621 gtcggcgcct cggacagtgc cgcctcgacg gcgtccaggt cggtcgtgtc gacgctgtcc
     1681 acccggacgc cgaagccgcc gaacgtccgc aggagctggg cccgggtgga gccgtagatc
     1741 gcgaggggcg ccaccacccg gtcgccggtc ttgaggagcg aggcaaaggc cgcgtggatc
     1801 gcccccatcc ccgacgcgag cgcgacgccg gcctcgccgc cggcgagctc ggcatacgcg
     1861 tcgccgagcg cggtcgtggt ggggttcgag atccggctgt aggcgtagcc ggcgcgggga
     1921 tcggcggcga cgcggcccag ctcgtcggcg tcgctcgagg cgaacgtcgc ggtctggtag
     1981 atgggcacgc tcgtcggctg ctggtcgatc ctcggcgcgc gggaggccgc gcggatggct
     2041 cgggtcgaga aaccgcggaa ccgcggctcg gggtcgctca cggcgccgat gctacaccgg
     2101 agtcgccgac cgccccggcg gcctgcccgc cgcccatctc ctggtcgcgg ccgttccggc
     2161 ggatcgggat cgagacgccg gtcacgcggt ccttgccggc gcgcttgctc gcgtacatcg
     2221 cctcgtcggc gctgatcatc agctcgtccg cggtggtgcc gtcacccggg tagctcacga
     2281 cgccgatcga cagcgaggcg cgcgaacccg gtgtcgactc gtccaccgtc atggcgttga
     2341 cgccgcgccg gatcttctcg gccaggacga acgcgccggt cggatcggtc tccggcagca
     2401 gcaccacgaa ctcgtcgccg ccgtatcggg ccgcggtgtc gatcctgcgg acgccggcgg
     2461 cgatcacggc cccgacgccg cgcaggacgc ggtccccctg gtggtgaccg agccggtcgt
     2521 tgatcgcctt gagatcgtcg aggtccatca tcagcaggca gaacccgcgc ccggaccgcg
     2581 cgcagcgggc gatctcccgg ccgatcgcgg cgaagaagaa ggtccggttg aacaagccgg
     2641 tcagcggatc gacggtcgac agccggatcg ccgcgtcccg cgtgcgtcgc tgctcgcggg
     2701 cgatgaccat cgacgcgtag gccagcagga cgagggccat caggttgacg ccgaccgtcg
     2761 cggccgcggc ggtgaggctg gtgtcggccg cggaacccac gacgacgcca agcgcatagc
     2821 ccagcgccgc ggcaccggcc agcaccacgg tgatcggcgg cgaaatgacg agcgcgccgc
     2881 ccgccacgat cagcgggaag gcgaagaaga acgggct
//
LOCUS       DATDDI010000760         2391 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_79137, whole genome shotgun sequence.
ACCESSION   DATDDI010000760 DATDDI010000000
VERSION     DATDDI010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79137"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..1178)
                     /locus_tag="VIU37_11085"
     CDS             complement(48..1178)
                     /locus_tag="VIU37_11085"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6014548.1"
                     /translation="MTDATLPTAQRPRWRGPLAGLARTGGGIGAVGVKELRGRMRGRR
                     AFVILTIYLLLLGGFAWMVEMIMERNMSTGFGSSTYAGASIGQGIFAALLMLETLQVA
                     FLAPAATAGAISLEREKRTLELLVVTPISSIAIVLGKLLSALVYVWLLIAASIPLTAV
                     VFVYGGVAPDDVLRGYLVLIVTALGLGSFGLFCSSLVKRTQAATAITIFGVLVISIGS
                     VFLLAFWGAMTTRTTNDGTTRGSAPQELGYLNPFLAQVDVLCGTETSFGGWCSLESSL
                     LPSQNGVVFVDGGASGPIIAPVAPIPIGKDLVLRGQGVANDVAVPPAVAPFGVVRDSL
                     WPRSVISWLILSVVFLILSVQFVSPTRRWRLPRRRRRQTSGA"
     gene            complement(1188..2150)
                     /locus_tag="VIU37_11090"
     CDS             complement(1188..2150)
                     /locus_tag="VIU37_11090"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014549.1"
                     /translation="MTAIVRTEGLVKRYDGTLAVAGVDLAIEPGEIFGLVGPNGAGKT
                     TTLRMLATLLQPSSGDAEIDGWSVTRNPDQVRRVLGFMPDVFGVYDDMKVWEYLDFFA
                     RCYGLPAAARRRMIGDLLELVDLAPRRDDYVQTLSRGMEQRLCLAHALVHDPKVLLLD
                     EPASGLDPRARVELRELLRELRNLGKTIVISSHILPELEELCSSVAIVDQGKVLAHGR
                     VADIERRLRFGSVLRVRLLAEGEALEAGRASLAGDPDVASATILDDGTIELGFRGDDA
                     ATARLLASAIAAGLPIVSFARAASDLEELFLQVTAPDRQPLEAA"
     gene            complement(2147..>2391)
                     /locus_tag="VIU37_11095"
     CDS             complement(2147..>2391)
                     /locus_tag="VIU37_11095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014550.1"
                     /translation="PPTADCAPAVLDGLPEVEVFDVTGQEWKRLPHLSPGPRYALSDP
                     TRYVDPTSGTVLVRYVNDRQDNVGFSVDISITGTVQ"
BASE COUNT          392 a          816 c          862 g          321 t
ORIGIN      
        1 cccgggccgc cggatccgcg tgcgcgcccg cgccaggtcg atcgccctca tgctccgctc
       61 gtctgccgcc ggcgtcgccg gggcaggcgc catcggcgcg tgggcgagac gaactggacg
      121 gagaggatca ggaacaccac cgacaggatc agccacgaga tcacgctgcg tggccacagg
      181 ctgtcccgga ccacgccgaa tggcgcaacg gccgggggca cggcgacgtc gttcgcgacg
      241 ccctgtcccc gaaggaccag gtccttgccg atcgggatgg gcgcgacggg ggcgatgatc
      301 gggccgctgg cgccgccgtc gacgaagacg acgccgttct ggctcggcag gagcgacgac
      361 tcgaggctgc accagccgcc gaacgaggtc tcggtcccgc acagcacgtc gacctgcgct
      421 aggaacgggt tgaggtagcc gagctcctgc ggcgcgctgc cgcgcgtggt gccgtcgttt
      481 gtggtccgcg tggtcatcgc gccccagaac gcgagcagga agacggagcc gatcgagatg
      541 accaggacac cgaagatcgt gatcgcggtc gccgcctgcg tccgcttgac caggctcgag
      601 cagaagagcc cgaacgagcc gaggccgagc gccgtgacga tcagcacgag gtagccgcgc
      661 aggacgtcgt cgggggcgac gccgccgtag acgaacacga ccgcggtcag cgggatggac
      721 gccgcgatca gcagccagac gtagacgagc gcgctcagca gcttgccgag gacgatcgcg
      781 atcgacgaga tcggggtcac gaccagcagc tcgagcgtcc gcttctcccg ctccaggctg
      841 atcgctccgg ccgtcgcggc gggcgccagg aacgcgactt gcagggtctc gagcatgagc
      901 agggcggcga agatgccctg gccgatcgag gccccggcgt acgtcgacga gccaaacccc
      961 gtcgacatgt tgcgctccat gatcatctcg accatccagg cgaagccacc gagcaggagc
     1021 aggtagatgg tcaggatcac gaacgcgcga cggccgcgca tccggccgcg cagctccttg
     1081 acgccgacgg cgccgatccc gccaccggtc cgggccaggc cggccagcgg tccgcgccag
     1141 cggggacgtt gcgccgtggg aagcgtcgcg tcggtcatgg tggtcctcta cgccgcctcg
     1201 agcggctgac ggtccggggc cgtgacctgg aggaagagct cctcgagatc gctggcagct
     1261 cgggcgaagc tgacgatcgg cagccccgcg gcgatggcgg aggccagcaa ccgtgccgtg
     1321 gcggcgtcgt cgccgcggaa gccgagctcg atggtgccgt cgtcgaggat cgtcgcggac
     1381 gccacgtcgg gatccccggc caggctggcc cggccggcct cgagcgcctc accttctgcg
     1441 agcagccgga cccgaaggac agatccgaag cgcagccgtc gctcgatgtc ggccacccgg
     1501 ccgtgggcga ggaccttgcc ctggtcgacg atcgcgacgc tggagcagag ctcttcgagc
     1561 tcgggcagga tgtggctgct gatcacgatc gtcttgccca ggttccgcag ctcacggagc
     1621 agctcgcgaa gctcgaccct ggcgcgggga tccagccccg atgccggctc gtcgaggagc
     1681 aggaccttcg gatcgtggac cagcgcatgg gccaggcaca gccgctgctc catgccgcgc
     1741 gacagcgtct ggacgtagtc gtcgcgtcgc ggagctaggt cgaccagctc gagcaggtcg
     1801 ccgatcatcc gccggcgcgc cgcggccggc aggccatagc agcgggcgaa gaagtccagg
     1861 tactcccaga ccttcatgtc gtcgtagacg ccgaacacgt caggcatgaa gccgaggacg
     1921 cgccggacct ggtcggggtt ccgggtgacg gaccagccgt cgatctcggc gtcgccggac
     1981 gatggctgaa gcaacgtggc cagcatgcgc agggtcgtgg tcttgccggc gccgttgggg
     2041 ccgacgagcc cgaagatctc gccgggctcg atcgcgaggt cgacgccggc gaccgccagc
     2101 gtcccgtcgt accgcttgac caggccctcg gttcggacga tcgccgtcat tgcaccgtcc
     2161 ccgtgatcga gatgtcgaca ctgaagccga cgttgtcctg gcgatcattg acgtatcgga
     2221 cgagcacggt ccccgacgtc gggtcgacgt accgggtcgg atcgctcaag gcatagcgag
     2281 gtccgggcga caggtgcggc agccgcttcc attcctggcc ggtcacgtcg aagacctcga
     2341 cctcgggtag tccgtcgagc acggccgggg cacaatcggc ggtcggcggg t
//
LOCUS       DATDDI010000761         3635 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_182892, whole genome shotgun sequence.
ACCESSION   DATDDI010000761 DATDDI010000000
VERSION     DATDDI010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182892"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VIU37_11100"
     CDS             <1..234
                     /locus_tag="VIU37_11100"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024913.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY6014551.1"
                     /translation="GLGPDAIRTLARQLFERERHHRLTIDPAIDNERAIRAYARVGFK
                     PVGRMRRYQRFPDGTWRDALLMDLLADELVEDR"
     gene            231..1340
                     /locus_tag="VIU37_11105"
     CDS             231..1340
                     /locus_tag="VIU37_11105"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY6014552.1"
                     /translation="MTTEARVRLLVVGCGDVFARHYLPALEASADRAEIRAVVDPRPG
                     AAAEAVRSVARWSPEATAETDLATALARVDLDAAVNLTPAPLHGPINAAILAAGRHLY
                     SEKPLAGSVAEATRLIETAARRGLHFLCAPGSAATTRFRWLAETIASGRHGSPTLVVA
                     HHADPGPAAWREYTGDPTPFYREGVGPVFDHGVYRLHEMTTLLGPVARVQAMGSISSP
                     TRVVRGGPLTGRTIQVTTPDHVLINLEFRNGALGQLLASFGTAATKAPWLEIHFPMAT
                     LSFAGQSWEPDAPASLYVDDEGPGASERWIDGIDVPMDPAGVVETGVTHFIACLRGET
                     RPILTAEHARHVLDVILQAYASIGDGRTHETETTF"
     gene            complement(1374..2297)
                     /locus_tag="VIU37_11110"
     CDS             complement(1374..2297)
                     /locus_tag="VIU37_11110"
                     /inference="COORDINATES: protein motif:HMM:NF014036.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEY6014553.1"
                     /translation="MPHRTFAQVAKRRLTGKEGRERIREVRSLLDALPDYRNGPYADL
                     RKWLLSEIEDTRVRAGAIHRDSIAVRREGAAQIALVGPPNVGKSSLLQALSEIQIKTG
                     DYPFTTLRPVPALTRVEGVLIQLVEIPGLIEGASEDRGGGRALLGVLRSADAIVYCCR
                     ATADPVDLAVVKAEVDRAGIEKPTFLAATRADEAGPADLVRLRAMFAGLELVPVSILD
                     ERSLDAFRDAAWRLTGLLRVHLRNNGAIDPEPVALRPGATVADVAASVHHDLGATFSG
                     ALIWGPSARFDGQRVGRDHRVADGDAVEILR"
     gene            complement(2506..3045)
                     /locus_tag="VIU37_11115"
     CDS             complement(2506..3045)
                     /locus_tag="VIU37_11115"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEY6014554.1"
                     /translation="MEAQQGTRFDPHLESVHESPRDHGRLELIVRRPAVDEREILEDA
                     RLDLEGGLIGDRWAIRDTARTPAYLAAQLTVINTRLLAAIEPDRSRWPIAGDQLYVDL
                     DLCEEHLPVGSRLAIGTATIEVSAEPHTGCAKFSARFGSEALRWINSPLGRAHRLRGL
                     NARVVEAGTVRRGDAVRRA"
     gene            3211..>3635
                     /locus_tag="VIU37_11120"
     CDS             3211..>3635
                     /locus_tag="VIU37_11120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014555.1"
                     /translation="MALAPWIAPPVLAEYVHNVGIRFRRQVRGHTRHVGDASAIVEAC
                     IDACWNGRTFTASPGHFDMFWTRDLSFSVPSLIRLGHGSRVSESLAYALDVWTRRRRH
                     ITTTIHYFGRPGDVYEYGVDSLPLFLAALRSAGAIDLVER"
BASE COUNT          515 a         1321 c         1274 g          525 t
ORIGIN      
        1 ggcctggggc ccgacgccat ccggacactg gcacggcagc tgttcgagcg agagcgccac
       61 caccgcctca cgatcgaccc ggccatcgac aacgagcggg cgatccgggc ctatgccagg
      121 gtcgggttca agccggtcgg ccgcatgcgc cggtaccagc ggttcccgga cggcacgtgg
      181 cgggatgccc tcctgatgga cctcctggcc gacgagctgg tggaggaccg atgaccacgg
      241 aggcgcgggt ccggctgctc gtcgtgggct gcggggacgt gttcgcccgt cactacctgc
      301 cggcgctcga ggcatcggcc gaccgggccg agatccgggc ggtcgtcgat ccgcgacccg
      361 gcgccgcggc ggaggccgtc cggtcggtgg ctcgctggtc gcccgaagcc acggccgaga
      421 ccgacctggc gaccgccctc gctcgcgtgg acctcgatgc cgccgtgaac ctcacgcccg
      481 ccccgctcca cggtcccatc aacgcggcga tcctcgccgc cggccgtcac ctgtactccg
      541 agaaacccct ggccggctcg gtcgccgagg ccacgaggct catcgagacg gcggcccggc
      601 gcggactcca cttcctgtgc gcgcccggga gcgcggcgac gacccggttc cgctggctcg
      661 cggagacgat cgcctcgggc cgccatggtt caccgacgct cgtcgtcgcc catcacgccg
      721 accctgggcc ggcggcctgg cgcgagtaca ccggcgatcc gacgccgttc tatcgggagg
      781 gggtcggccc cgtcttcgat cacggcgtct accgactcca cgagatgacg acgctgctgg
      841 gaccggtcgc ccgcgtccag gcgatggggt cgatctcgtc gccgacccgc gtcgtccgcg
      901 gcggcccgct caccgggcgg acgatccagg tgaccacccc ggatcacgtc ctgatcaacc
      961 tcgagttccg gaacggcgcg ctcggccagc tgctggcgag cttcgggacg gccgccacga
     1021 aggcgccatg gctcgagatc cacttcccga tggcgacgct cagcttcgcc ggccagtcct
     1081 gggagccgga cgcgccggcg agcctgtacg tcgacgacga ggggcccggc gcgagcgaac
     1141 gatggatcga cggcatcgac gtccccatgg acccggccgg agtcgtcgag acgggcgtca
     1201 cgcacttcat cgcctgcctc cgcggcgaga cgagaccgat cctgaccgcc gagcacgcgc
     1261 gtcacgtcct cgacgtcatc ctccaggcgt acgcctcgat cggagacggc cggacccacg
     1321 agaccgagac caccttctga gcggcgctgc cgggccgggg cttcggcgcc cgttcagcgg
     1381 aggatctcga cggcgtcgcc atcggcgacc cgatggtcgc gacccacccg ctgtccgtcg
     1441 aagcgcgccg acggacccca gatgagcgcc ccactgaacg tggcgccgag atcgtggtgg
     1501 accgaggccg cgacatcggc caccgtcgca cccgggcgca acgccaccgg ctccgggtcg
     1561 atcgcgccgt tgttccggag atggacccgg agcaggccgg tcaaccgcca cgccgcgtcg
     1621 cggaacgcgt ccaggcttcg ttcatcgagg atcgagaccg ggacgagctc gagcccggcg
     1681 aacatggcac gcaaccgcac caggtcggcg ggacccgcct cgtcggcgcg ggtcgcggcg
     1741 aggaacgtgg gcttctcgat cccggcccgg tcaacctcgg ccttgacgac ggcgaggtcg
     1801 accgggtccg ccgtggcccg gcagcagtac acgatcgcgt ccgccgagcg gagcacgccg
     1861 agcagcgccc ggccgccgcc acggtcctcc gacgcaccct cgatgagccc cgggatctcg
     1921 acgagctgga tcaggacgcc ttcgacgcgg gtgagcgcag gcacgggccg cagcgtcgtg
     1981 aacgggtaat cacccgtctt gatctggatc tcggacaggg cctgcaggag cgacgacttt
     2041 ccgacattgg gtggaccgac gagcgcgatc tgggccgcgc cttcccgccg aaccgcaatg
     2101 gagtcgcgat ggatcgcccc ggcacggacg cgtgtgtcct cgatctcgga gagcagccac
     2161 ttgcggaggt ccgcgtaggg accgttgcgg tagtccggga gcgcgtcgag caaggaccgg
     2221 acctcgcgga tccgctctcg gccttctttt cctgtgagtc gtcgcttcgc cacctgggcg
     2281 aaggttcgat gcggcatcgg catcgcctgt ctccttcacc ggcgggcgac gcgtcgcgcg
     2341 cagcacggcg gctgcagcgg cggcacgcgt cgatcccgcc ccttccactg acgcttgtgc
     2401 tggaaggggc ggttcagccg ttcctgttgg agatcgtggc gaaccaggcg ttcatcgcgg
     2461 cgacagggta caccagcgcg ctgcccgcgg gtggcgccgg cggaatcacg ctcgccggac
     2521 cgcgtcgccc cggcggaccg tgccggcctc cacgacacgg gcgttgagtc cccgcaggcg
     2581 gtgggcgcga ccgagcgggg agttgatcca gcgcagggcc tcgctgccga agcgagcgct
     2641 gaacttcgcg catcccgtgt gcggctcggc gctgacctcg atcgtggccg tcccgatcgc
     2701 gagacggctg ccgacgggca ggtgctcctc gcacagatcg aggtcgacgt acagctggtc
     2761 gccggcgatc ggccagcgcg atcggtccgg ttcgatcgcg gcgagcagcc gggtgttgat
     2821 gacggtcagc tgcgcggcca ggtacgccgg cgtcctcgcg gtatcgcgga tcgcccagcg
     2881 gtcaccgatc agaccgccct cgaggtcgag ccgggcatcc tcgaggatct cgcgctcgtc
     2941 gacggccggg cgacgcacga tcagctcgag gcggccgtgg tcgcgaggcg attcgtggac
     3001 cgattccagg tgcggatcga accgggtgcc ttgctgcgct tccatgcggc ggagtgtcgc
     3061 agatcgcgga tgacggggca tcatgacagg cacccgtacg atggaggtgt cgtccagggc
     3121 gccgagtgcg gcgcagtctg ggcatcggtc cggccgcaga ctccgggcgc atcgggaagc
     3181 cttcccggct ccagccctgg agtgtgtcgc gtggcactcg caccctggat cgcgcctccc
     3241 gtcctggccg agtacgtgca caacgtcggc atccggttcc ggcgacaggt tcggggccat
     3301 acccgccatg tcggcgacgc ctcggcgatc gtcgaggcgt gtatcgacgc ctgctggaac
     3361 ggacggacct tcacggccag ccccgggcat ttcgacatgt tctggacgcg ggacctgtca
     3421 ttctccgtgc cgtccctgat ccggctgggg cacggctcgc gcgtcagcga gtcgctggcc
     3481 tacgcgctgg acgtctggac gcggcgacgc cgccacatca cgacgaccat ccactacttc
     3541 ggccgcccgg gcgacgtcta cgaatacggc gtcgactcgc ttccgctctt cctcgccgcc
     3601 cttcgatcag ccggcgcgat cgacctcgtc gagcg
//
LOCUS       DATDDI010000762         2081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_682181, whole genome shotgun sequence.
ACCESSION   DATDDI010000762 DATDDI010000000
VERSION     DATDDI010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682181"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VIU37_11125"
     CDS             <1..619
                     /locus_tag="VIU37_11125"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY6014556.1"
                     /translation="LTHLAITDHDRIDGALEARAAAPAGLTVIVGEEVRTRDGDLICL
                     FLTEAIPPGLPAVEAIAAARAQGGLVGIPHPFDRLRGSLLRDPAMEALASSVDWVETH
                     NARLLGGGNDRALEYAREHGLPGVAVSDAHSILEVAVAYTRLEGDPGTAAGLLAALAG
                     GQLVPGRASFVIRAWTPMAKLVQRARGNRRVAWTAGPGTGRRELP"
     gene            652..1752
                     /locus_tag="VIU37_11130"
     CDS             652..1752
                     /locus_tag="VIU37_11130"
                     /inference="COORDINATES: protein motif:HMM:TIGR00374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEY6014557.1"
                     /translation="MAGDPDREVASDAMEITAGELDPNERAGQLSLSARLRQPRTIIS
                     ILIPLAIIAVFVSLNGPQLGKVPGLIGGADLPLVGLAFLIFYSGFPMRGARWATLLRG
                     TGIRVSVRDSTEILFLSWLVNCVVPAKLGDVYRAYLLKINSDASLSRTFGTVFIERVL
                     DIIAIAGLGIAAGFWSFRNGLPGPIQAVFVVGLVVVAALSVGLFTMRNFGRRILKVLP
                     TPPRVLELYDRFEEGVFGAIAIRQLPLLGVLTGSIWMTEALRLFFVVQALGFADVTLG
                     LSGAVFVALIGSLLTAVPLSPAGLGIVEAGVVGVLTVAYRVPLAEATAIALLDRVISV
                     FSIIVLGSIGYLVSSKPRGLNAVGRRPETTAG"
BASE COUNT          269 a          735 c          742 g          335 t
ORIGIN      
        1 gttgacgcac ctcgcgatca cggaccatga ccggatcgac ggagcgctgg aggcccgcgc
       61 ggcggcgccc gccgggctga cggtgatcgt cggcgaagag gtgcggaccc gcgacggcga
      121 cctgatctgc ctgttcctca ccgaggcgat cccgccgggc cttccggcgg tcgaggcgat
      181 cgccgcggcc cgcgcccagg gcgggctggt cgggatcccg cacccgttcg atcggttgcg
      241 tgggtcgttg ctgcgcgacc cggcgatgga ggcccttgcc tcgagcgtcg actgggtcga
      301 gacccacaat gcccggctgc tcggcggcgg caacgatcgc gcgctcgagt acgcgcgcga
      361 gcacgggctg cccggggtgg ccgtgtccga cgcccactcc atcctcgagg tcgcggtcgc
      421 ctacacgcgc ctcgagggcg atcccggcac ggcggccggc ctgctcgccg cattggccgg
      481 cggacagctc gtccccggac gggcgagctt cgtgatccgg gcctggaccc cgatggccaa
      541 gctcgtccag cgcgcacgcg gcaaccggcg ggtcgcgtgg acggccggac cgggcaccgg
      601 ccggcgggag ctcccgtgag cgggccgggt cccgggcagg accatcgggc gatggccggg
      661 gatcccgatc gggaggtagc gtccgacgcg atggagatca ccgccgggga gctcgatccg
      721 aacgagcgcg ccggccagct gtcgctctcc gcccgacttc gccagccgcg gacgatcatc
      781 tcgatcctga tcccgctggc gatcatcgcc gtgttcgtgt cgctcaacgg cccgcagctc
      841 gggaaggtcc cggggctgat cggcggcgcg gacctgccgc tcgtcggcct ggcgttcctc
      901 atcttctaca gcggcttccc gatgcgtggt gcgcgctggg cgacactgct ccgtggaacc
      961 gggatccggg tgtccgtccg ggactcgacc gagatcctgt tcctgtcgtg gctcgtcaac
     1021 tgcgtggtgc cggccaagct gggcgacgtg taccgggcct acctgctcaa gatcaatagc
     1081 gacgcgtcgc tcagccggac cttcgggacg gtcttcatcg agcgggtcct cgacatcatc
     1141 gcgatcgccg ggctggggat cgcggccggc ttctggagct tccggaacgg gctgcccggc
     1201 cccatccagg cggtcttcgt ggtcggtctg gtcgtcgtcg ccgcgctgtc ggtcgggctg
     1261 ttcacgatgc gcaacttcgg gcgccggatc ctcaaggtcc tcccgacgcc gcctcgcgtc
     1321 ctcgagctct acgaccggtt cgaggagggc gtgttcgggg cgatcgcgat ccgccagttg
     1381 cccctcctgg gcgtcctgac cggttcgatc tggatgacgg aggcgctccg gctgttcttc
     1441 gtcgtccagg cgctcgggtt cgccgacgtc acgctcgggc tgtccggggc ggtcttcgtg
     1501 gccctcatcg gctcgctgct gacggccgtg ccgctcagcc cggccggcct gggcatcgtg
     1561 gaagccggcg tggtgggcgt cctgaccgtc gcgtaccgtg tgccgctggc tgaggcgacc
     1621 gcgatcgcgc tgctggatcg ggtgatcagc gtcttctcga tcatcgtgct cgggagcatc
     1681 ggctacctcg tctcgtcgaa accccgcggg ctcaacgcgg tcgggcggcg gccggagacc
     1741 accgccggct gagcggctga cgacctgccc cgccggttgc gagccaaccg caaccgaaac
     1801 cgcaacggtt ggacacatcc gtggcgggcc tccgaacgta cgctccaacg cggtctcaag
     1861 tgggttcgcc tgctcggacc accgcgcgat cgtctggcac cggtacccga tgggactccc
     1921 agatggacct cagcccggta cgaacgggtg atacaggtcg tgcaggcgcg cgtggatagt
     1981 gaggccagcg gatgacccac ccagattcgt tcccagggag cgcccaggca cccatgacca
     2041 cacagaacgg ccgagccttc aacgagtggc tccggacgca g
//
LOCUS       DATDDI010000763         2035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_599161, whole genome shotgun sequence.
ACCESSION   DATDDI010000763 DATDDI010000000
VERSION     DATDDI010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_599161"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VIU37_11135"
     CDS             <1..568
                     /locus_tag="VIU37_11135"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEY6014558.1"
                     /translation="LSDHEATYVADVGQNQMWLARYAGFRHPNTHVSSGGLGTMGFSV
                     PAAMGAALGNPDREVWAIAGDGGFQMTSQELMTLVQDRIPVKIALFDNKKLGMIRQWQ
                     EIIYAGNYHSAHLQGPDYLKLADAYGIPAIKATTPDEVDDAIRFAQGVDGPAFVWFEI
                     AGEQNIFPMMPAGKGLSDLIENWGGADE"
     gene            565..1215
                     /gene="ilvN"
                     /locus_tag="VIU37_11140"
     CDS             565..1215
                     /gene="ilvN"
                     /locus_tag="VIU37_11140"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF008864.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEY6014559.1"
                     /translation="MSGDPSSNGKAPAETAAPSSPGGPATPATRHGPAHSAPPPRALP
                     GGGETRRHVLVAVVLNKPGVLNRVSSLMRARNFNIDSLAVSHTDSDDVSRMTITLHGD
                     DVAVEQATKQLYRLIDVLKVQDVTSEPTIQQELALVKIRATDGNRAEVLKLVELSRGR
                     VVDLADGSVIVEVTGTESEVDAFVALVRTYGIKELVRTGAVVMARGSGSIEEAIKR"
     gene            1212..>2035
                     /gene="ilvC"
                     /locus_tag="VIU37_11145"
     CDS             1212..>2035
                     /gene="ilvC"
                     /locus_tag="VIU37_11145"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: protein motif:HMM:NF004017.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEY6014560.1"
                     /translation="MTARMYYDDDADPSALAGQTVAIIGYGSQGHAHALNLHESGVDV
                     VVGLAAGSKSRALAEEAGLRVLDVADAVRAADVIMILVPDTAQKQVYDAEIGPNLRPG
                     QLLMFAHGFNIHFKRITPPDFVDVGMVAPKGPGHLVRSVYQAGGGVPALFAVHQDASG
                     SGRARVLAYARALGNTRAGVLETTFAEETETDLFGEQSVLCGGTAALVKMAFETLVGA
                     GYQPELAYFETMHELKLIVDLMYRGGLNFMRFSVSDTAEYGDYVSGPRIIDDHVRAT"
BASE COUNT          340 a          715 c          699 g          281 t
ORIGIN      
        1 gctgtccgat cacgaggcga cctacgtcgc cgacgtcggc cagaaccaga tgtggctagc
       61 ccgctatgcc ggcttccgcc acccgaacac gcacgtcagc tcgggcggcc tgggcacgat
      121 gggcttcagc gtcccggcgg cgatgggcgc ggccctcggc aacccggatc gggaggtctg
      181 ggcgatcgcc ggcgacggtg gcttccagat gacgagccag gagctcatga ccctggtcca
      241 ggatcggatc ccggtcaaga tcgctctctt cgacaacaag aagctgggga tgatccggca
      301 gtggcaggag atcatctacg ccggcaacta ccactcggcg catctccagg gacccgacta
      361 cctcaagctc gccgacgcct acgggatccc ggcgatcaag gccaccaccc ccgacgaggt
      421 cgacgacgcc atccgcttcg cccagggcgt cgacgggccg gcgttcgtct ggttcgagat
      481 cgccggcgag cagaacatct tcccgatgat gccggccggc aagggcctgt ccgacctgat
      541 cgagaactgg ggcggggccg acgaatgagc ggggacccga gctccaacgg gaaggctccg
      601 gcggagacgg cggcgccgtc atcgccgggc gggccggcga cgcctgccac caggcatggg
      661 ccggcgcaca gcgcgccacc gcccagggcg ctgcccggcg gcggggagac ccggcgccac
      721 gtcctggtcg cggtggtcct caacaagccc ggcgtgctca accgcgtctc gagcctcatg
      781 cgggcgcgca acttcaacat cgactcgctc gcggtcagcc acaccgacag cgacgacgtc
      841 agccggatga cgatcacgct ccatggcgac gacgtcgcgg tcgagcaggc cacaaagcag
      901 ctctaccggc tgatcgacgt cctcaaggtc caggacgtca ccagcgagcc gaccatccag
      961 caggagctgg cgctggtgaa gatccgggcc accgacggca atcgggccga ggtgctcaag
     1021 ctcgtggagc tctcgcgcgg ccgggtcgtc gacctggccg acggctcggt catcgtggag
     1081 gtgaccggca ccgagtccga ggtcgacgcg ttcgtcgcgc tggtccggac gtacggcatc
     1141 aaggagttgg tccgcaccgg tgccgtcgtc atggcccggg gctcgggatc catcgaggag
     1201 gcgatcaagc gatgactgcg cggatgtact acgacgatga cgccgatcca tcggccctgg
     1261 ccggccagac cgtggccatc atcggctacg gcagccaggg ccacgcgcac gcgctcaacc
     1321 tccacgagtc gggggtggac gtggtggtcg ggctggcggc cggctcgaag agccgcgccc
     1381 tggccgagga ggccggtctc cgcgtcctgg acgtggccga cgccgtcagg gcggccgacg
     1441 tgatcatgat cctcgtcccg gacaccgccc agaagcaggt ctacgacgcc gagatcgggc
     1501 cgaacctgcg cccgggccag ctgctgatgt tcgcccacgg gttcaacatc catttcaagc
     1561 ggatcacccc gcccgacttc gtggacgttg gcatggtcgc gccgaagggc ccgggccacc
     1621 tcgtccgaag cgtctaccag gccggcggcg gggtcccggc gctgttcgcc gtccaccagg
     1681 acgcctcggg cagcgggcgc gcgcgtgtcc tcgcctacgc cagggccctc ggcaacacgc
     1741 gagcgggcgt cctcgagacg accttcgccg aggagaccga gaccgacctg ttcggcgagc
     1801 aatccgtcct gtgcggcggc accgccgcgc tcgtgaagat ggccttcgag acgctcgtcg
     1861 gggccggcta ccagcccgag ctcgcctact tcgagacgat gcacgagctc aagctgatcg
     1921 tggacctgat gtatcgcggc ggactcaact tcatgcgctt cagcgtgagc gacacggccg
     1981 agtacggcga ctacgtgtcc gggccgcgga tcatcgacga ccacgtccgg gcgac
//
LOCUS       DATDDI010000764         1597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_203658, whole genome shotgun sequence.
ACCESSION   DATDDI010000764 DATDDI010000000
VERSION     DATDDI010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203658"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..>1597)
                     /locus_tag="VIU37_11150"
     CDS             complement(44..>1597)
                     /locus_tag="VIU37_11150"
                     /inference="COORDINATES: protein motif:HMM:NF040318.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="R3H domain-containing nucleic acid-binding
                     protein"
                     /protein_id="HEY6014561.1"
                     /translation="HPGIGRARRMQVRTPQQQHGVMIEAVENHMPQVIVIDEIGTEFE
                     AQAARTIAERGVQLIGTAHGNNLDNLMLNPTLSDLIGGIQSVTLGDEEARRRRTQKSV
                     LERKAPPTFDVIVEIQDRERVVVHADVADTIDAMLRGDPVAPELRWRDEEGVHRSQGR
                     PRPSPREQLGAERFAGLVGAGSSWRMEPGWRGEGSYRGGYRETDRGAGFRPGYRPGAS
                     GGWRQSRGGSGREPATRGPVSEGGLAGTLPGERFASPPGAGWPGQHPAEVPFVAGEIA
                     DRGPLERGAAPTAAETRAREARELERQKAWRDQASRALTALKAEEGTGPVNAEMLEDD
                     DDLDKLPLGAEEGPDGGTVLVPGGSPLPTLRVLPQGISRKRLEQAVRDLQLPVVIARD
                     VDEADVVMTLRNEYKQKTPMLREAEDRSMPIYVLKSNTIPQMQSSLTSIFSLEIDPRE
                     AAMRETEDAIEAVLQSSEAVELSPQNAYIRRLQHQLAERANLLSRSRGREPYRRVRLY
                     PDAARSGWR"
BASE COUNT          178 a          596 c          580 g          243 t
ORIGIN      
        1 ggtcgccggg gctcggtcac gttgcctccc ggtcggcctg ccgtcagcgc cagccgctcc
       61 tcgccgcgtc cgggtagagc cgcacccgcc gatagggttc gcgaccgcgg gaccgcgaca
      121 gcaggtttgc gcgctcggcc agctggtgct gcagccgccg gatgtacgcg ttctgcggcg
      181 acagctcgac cgcctccgac gactggagga cggcctcgat ggcgtcctcg gtctcgcgca
      241 tggcggcctc gcgcggatcg atctcgagcg agaagatcga ggtcaggctg gactgcatct
      301 gcgggatcgt gttgctcttg aggacgtaga tcggcatcga ccggtcctcg gcctcgcgca
      361 gcatcggcgt cttctgcttg tactcgttgc gcagcgtcat cacgacgtcg gcctcgtcga
      421 cgtcccgggc gatgaccacc ggcagctgga gatcccggac ggcctgctcc aggcgtttcc
      481 ggctgatccc ctgcggcagg acgcgcagcg tcggcagcgg tgaaccgccg gggaccagca
      541 cggtcccgcc gtcgggtccc tcctcggcgc cgagcggcag cttgtcgagg tcgtcgtcgt
      601 cctcgagcat ctcggcattg accgggccgg tcccctcctc cgccttcagc gcggtcaggg
      661 cgcggctggc ctggtcgcgc caggccttct ggcgctccag ctcgcgggcc tcgcgcgccc
      721 gggtctcggc cgcggtgggc gcggcgccgc gctcgagcgg gccgcgatcg gcgatctcgc
      781 cggccacgaa cggaacctcg gccgggtgct ggccgggcca gcccgcgccg ggcggcgagg
      841 cgaatcgttc accgggcagg gtgccggcca agccaccctc cgagacgggg ccgcgcgtgg
      901 ccggctcgcg accggacccg ccacgcgact ggcgccagcc gccggacgcg ccgggccggt
      961 agcccggccg gaagccggcg ccgcggtcgg tctcgcgata gccgccacgg tacgagccct
     1021 cgccgcgcca gcccggctcc atccgccacg aggaccccgc tcccaccagc ccggcgaacc
     1081 gctcggcccc cagctgctcc cgcggcgacg gccgtggcct cccctggctc cggtggacgc
     1141 cctcctcgtc gcgccagcgg agctccgggg cgacggggtc gccgcgcagc atcgcgtcga
     1201 tggtgtcggc gacgtcggca tggaccacga cgcgttcgcg atcctggatc tcgacgatga
     1261 cgtcgaatgt cgggggcgcc ttgcgctcga gcacgctctt ctgcgtccgc cgccggcgcg
     1321 cctcctcgtc gccgagggtg acgctctgga tcccgccgat caggtcggac agcgtcgggt
     1381 tgagcatgag gttgtcgagg ttgttgccgt gggccgtgcc gatcagctgg acgccgcgct
     1441 cggcgatggt ccgggcggcc tgggcctcga actcggtccc gatctcgtcg atgacgatga
     1501 cctggggcat gtggttctcg accgcctcga tcatcacgcc atgctgctgc tggggcgtgc
     1561 gaacctgcat gcgccgcgcg cggccgatgc cggggtg
//
LOCUS       DATDDI010000765         1974 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_515927, whole genome shotgun sequence.
ACCESSION   DATDDI010000765 DATDDI010000000
VERSION     DATDDI010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515927"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..538)
                     /locus_tag="VIU37_11155"
     CDS             complement(<1..538)
                     /locus_tag="VIU37_11155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014562.1"
                     /translation="MTRLLFCGDSAGTGFGTVTRELGKGLLARGIDVRFVSMNEQPGG
                     ELEEPFAGRTAIIGGVDGWIATPVDAETAKVATSRLEGMFTGGLFEDGWRPDAAIILG
                     DPASMKMSPVPEFVPDGFPVFHYVPIEGVGLPPAWRAIWERFVPVAVSESGADAIAAV
                     TGTRPVVVYHGIDTEVFHP"
     gene            complement(535..1461)
                     /locus_tag="VIU37_11160"
     CDS             complement(535..1461)
                     /locus_tag="VIU37_11160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014563.1"
                     /translation="MNALFVSPTVDTAGLGIGMKRAFDQYGGAWKARHVRTSNSWLDY
                     GVDLQVGPGDPELVRLWAEADVVVIIEQPHAAQWGPRKPFIVWHLGTYFRRQIPTVHA
                     QCQAIGALEVADMHDLIRRADYPLGWLPDVIDPVPLATIRAENYPNDGVLRIAHAPTD
                     RVIKSTDVIVAAVDRLARRHEFEFDLIERVPNAECLVRKARADIFIDELTLGYGLNAL
                     ECWSMGIPVISGIADPVTRDLMKTDSGGGLPFLCTDAEMLEACIEDLIVSERDRRHWA
                     TAGMNHLQAFHTPRAVVERAIGLFDAVMAVAS"
     gene            complement(1458..>1974)
                     /locus_tag="VIU37_11165"
     CDS             complement(1458..>1974)
                     /locus_tag="VIU37_11165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014564.1"
                     /translation="CYLQTLLELPGPAKATRVLWHFDLDLNGEHRQVRDSEGNPAHTE
                     FGVFDTDLLRSLGGYGADRRVGQDTLLYLQLLPHVAPIAWLNEPLYHKRVHAASLTHA
                     PETTFGTPLRNEVFEHNDAVAQTVYRWGFSDLERVRAFREWLVPEDLRERLAERVGIV
                     RAALEPLAVAA"
BASE COUNT          289 a          665 c          733 g          287 t
ORIGIN      
        1 ccggatggaa gacctcggtg tcgatgccgt gatagacgac caccggtcgc gtgccggtca
       61 cggccgcgat ggcgtcggcg cctgactcgc tcacagccac cgggacgaac cgctcccaga
      121 tggcgcgcca ggcgggcggc aggccgacgc cctcgatggg cacgtagtgg aagaccggga
      181 agccgtccgg cacgaactcg ggcaccgggc tcatcttcat gctcgccggg tcgccgagga
      241 tgatggccgc gtccggccgc cagccgtcct cgaagagccc gcccgtgaac atgccctcga
      301 ggcgggacgt cgcgaccttc gccgtctcgg catcgaccgg cgtggcgatc cagccatcga
      361 cgccgccgat gattgccgtc cgaccggcga acggctcctc gagctcgccg ccgggctgct
      421 cgttcatcga cacgaagcgg acgtcgatgc cccgggcgag gaggcccttg ccgagttcgc
      481 gcgtcaccgt gccgaagccg gtgccggcgc tgtcgccgca gaagagcagg cgggtcacga
      541 cgccaccgcc atgaccgcat cgaacaggcc gatggcccgc tcaacgaccg cccgcggcgt
      601 gtggaacgcc tggaggtggt tcatccccgc cgtggcccag tgccggcggt cgcgctcgga
      661 gacgatgagg tcttcgatgc acgcctcgag catctcggcg tcggtgcaga ggaacggcag
      721 cccgccgccc gagtcggtct tcatcaggtc gcgggtcacg ggatcggcga tgcccgagat
      781 gaccgggatg cccatgctcc agcactcgag cgcgttgagc ccgtagccga gcgtcagttc
      841 gtcgatgaag atgtcggctc gcgccttgcg gacgaggcac tcggcgttcg gcacccgctc
      901 gatgaggtcg aactcgaact cgtgccgccg cgccagccgg tccaccgcgg ccacgatgac
      961 gtcggtgctc ttgatgactc ggtcggtcgg tgcgtgggcg atgcggagga cgccgtcgtt
     1021 ggggtagttc tcggctcgga tcgtggcgag cggcaccggg tcgatgacgt ccggcagcca
     1081 gccgagcggg tagtcggccc gccggatgag gtcgtgcatg tcggcgacct cgagcgcgcc
     1141 gatggcctgg cactgcgcgt ggacggtcgg gatctggcga cggaagtacg taccgaggtg
     1201 ccacacgatg aacggcttgc gtggtcccca ctgcgccgcg tgcggctgct cgatgatgac
     1261 gacgacgtcc gcctcggccc agaggcgcac cagttcgggg tcgcccgggc cgacctggag
     1321 gtccacgccg tagtcgagcc acgagttcga ggtgcggaca tgccgggcct tccacgcgcc
     1381 gccgtactgg tcgaacgcgc gcttcatgcc gatgccgagg ccggcggtgt cgacggtcgg
     1441 ggagacgaag agggcgttca tgccgccacc gccagcggct cgagggccgc ccgcacgatc
     1501 ccgacccgct cggcgaggcg ctcccgcagg tcttcgggga cgagccactc acggaacgcg
     1561 cggacccgct cgaggtcgga gaagccccag cggtagaccg tctgggcgac ggcgtcgttg
     1621 tgctcgaaga cctcgttgcg gagcggcgtc ccgaaggtcg tctcgggcgc gtgggtgagc
     1681 gaggccgcgt ggacgcgctt gtggtagagc ggctcgttga gccacgcgat cggcgcgacg
     1741 tgcggcagga gctggaggta gaggagcgtg tcctggccga ctcggcggtc cgcgccgtag
     1801 ccgccgagcg agcgcagcag gtcggtgtcg aagacgccga actcggtgtg cgccgggttc
     1861 ccctcgctgt cgcgcacctg ccgatgctcg ccgttcaggt cgaggtcgaa gtgccagagg
     1921 acgcgggtcg ccttcgccgg accgggcagc tcgaggagcg tctggaggta gcac
//
LOCUS       DATDDI010000766         1721 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_16504, whole genome shotgun sequence.
ACCESSION   DATDDI010000766 DATDDI010000000
VERSION     DATDDI010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16504"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1293
                     /locus_tag="VIU37_11170"
     CDS             <1..1293
                     /locus_tag="VIU37_11170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014565.1"
                     /translation="SPPAGPTRVPAVGGTRTVPAPDPIARDYLLLALRLDQRIPGLVD
                     GYFGPADLKAQVDTEQLRAPARLRDDAAALRERLAVEVDDGRRRAWLDAQLVALERQA
                     AALAGEERPYLDHVARCFAITPPRQPDAEFDTAAARLDGLLPGGGPVADRLAAWDRRF
                     EIPPDRLADILAWLVERCRDRARTLFGLPEGEDLQISLVTGQPWSGYNWFHGGRRSRV
                     DINTDLPVHAGDVVRTVAHETYPGHHLEHAWKEADLVDRQGRLEASILLINTPECLIS
                     EGLANLGSRFVAPVGEAPGLLMELYQRAALPIASDPVAAREAADLEVAIGDARRALAA
                     VRGNAAILLHADGRPRAEVLEYLEVVGRYPRTIAAKRLEFIEHPLWRTYVFVYAEGEA
                     LLSRWVDAAPEAERAARFGRLLHEQLTPAAVGAVTAPG"
     gene            complement(1277..>1721)
                     /locus_tag="VIU37_11175"
     CDS             complement(1277..>1721)
                     /locus_tag="VIU37_11175"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014566.1"
                     /translation="RLVGKVDDWWGGRRLHQLFLRQWFQHFTGTSWVDEDAKGELVGF
                     LVGFISPDHPDRAHIHLVATSPNHRRRGLGRRLYQQFFDDVASRGVRWVTAVTWPGNR
                     VSVAFHRAMGFTVDDGPGTQRLYGTPAYPDYEADGDDRVVFSREL"
BASE COUNT          222 a          648 c          620 g          231 t
ORIGIN      
        1 tcgcctccgg ccggcccaac gcgcgtcccg gccgtcggcg ggacgcggac cgtgccggcg
       61 ccggacccga tcgcccgcga ctacctgttg ctcgcgctgc gactcgacca gcggatcccg
      121 ggcctcgtcg acggctactt cgggccggcg gacctgaaag cccaggtcga taccgagcag
      181 ctccgtgccc cggcccgcct gcgggacgac gcggcggctc tccgcgagcg gctcgcggtc
      241 gaggtcgacg acggccggcg acgcgcctgg ctcgacgccc agctggtcgc gctcgagcga
      301 caggcggccg cgctggccgg ggaggagcgc ccgtacctcg accatgtcgc ccgctgcttc
      361 gcgatcacgc cgccgcgcca gccggacgcc gagttcgaca ccgcggccgc acggctcgac
      421 gggctgctgc ccgggggcgg cccggtcgcc gaccgactgg ccgcgtggga ccggcggttc
      481 gagatcccgc ccgaccggtt ggcggacatc ctcgcctggc tggtcgaacg ctgccgcgat
      541 cgggccagga cgctgttcgg tctgcccgag ggcgaggacc tgcagatctc gctggtcacc
      601 ggccagccgt ggtccggcta caactggttc catggcgggc gccggtcgcg ggtcgacatc
      661 aacacggacc tgccggtgca tgccggcgac gtggtccgca cggtcgccca cgagacgtac
      721 ccgggccacc accttgagca tgcctggaag gaggccgacc tcgtcgaccg acaggggcgg
      781 ctggaggcct cgatcctgct gatcaacacc cccgaatgcc tgatcagcga gggcctcgcc
      841 aacctcggca gccggttcgt ggcgcccgtg ggcgaggcgc cagggctgct catggagctc
      901 taccagcggg ctgcgctgcc gatcgcctcc gatccggtcg ccgcgcgcga ggccgccgac
      961 ctcgaggtcg ccatcggcga cgcccgccgc gccctggccg ccgtgcgcgg caacgcggcg
     1021 atcctcctcc acgccgatgg tcgcccccgt gctgaggtgc tcgagtacct cgaggtcgtc
     1081 gggcggtatc cccgcacgat cgccgcgaag cggctcgagt tcatcgagca tccgctgtgg
     1141 cggacgtacg tcttcgtcta cgccgagggc gaggcgctgc tgtcgcgctg ggtcgacgcc
     1201 gcgccggagg cggagcgcgc ggcgcggttc ggacgcctgc tccacgagca gctgacgccc
     1261 gcggccgtcg gcgcggtcac agctcccggc tgaacaccac ccggtcgtcg ccgtccgcct
     1321 cgtagtcggg atacgcggga gtgccgtaca gccgctgggt tcccggtccg tcgtcgacgg
     1381 tgaagcccat ggcccggtgg aaggcgaccg acacgcggtt gcccggccag gtgaccgccg
     1441 tgacccaccg gacgccgcgg ctcgcgacat cgtcgaagaa ctgctggtag agccggcgcc
     1501 caaggccgcg acggcggtgg ttggggctcg tcgccacgag gtggatgtgg gcgcggtccg
     1561 ggtggtccgg gctgatgaat ccgaccagga atccgacgag ctcgcccttc gcgtcctcgt
     1621 ccacccacga cgtcccggtg aagtgctgga accactgccg caggaacagc tggtggaggc
     1681 gccgcccgcc ccaccagtcg tccaccttgc cgaccagccg g
//
LOCUS       DATDDI010000767         2368 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_495195, whole genome shotgun sequence.
ACCESSION   DATDDI010000767 DATDDI010000000
VERSION     DATDDI010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495195"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..557)
                     /locus_tag="VIU37_11180"
     CDS             complement(<1..557)
                     /locus_tag="VIU37_11180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014567.1"
                     /translation="MTTPDRRFGAQSMSAPLLDVLVKRPGPAFGAAFDDPAHGFLPPV
                     DLALAQHEHDAFVATLAGLGPRVHVLDTELDSPDLVYTFDPLLITDRGAIPLRPGKPN
                     RAAEPAALEGWTRAAGIPTVGRVEAPGTVEGGDTVWLRPDLFCIGRTLRTNDAGARQP
                     AALVGGDVRIFDVPYWKGPAELIHL"
     gene            619..861
                     /locus_tag="VIU37_11185"
     CDS             619..861
                     /locus_tag="VIU37_11185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014568.1"
                     /translation="MSGYTASARLHGGSTRFVAVAADRRPITHEPVAPSPERADRERA
                     EPARRPAFERLASSWEDLREAWAQTTFYLFDPESWR"
     gene            916..1449
                     /locus_tag="VIU37_11190"
     CDS             916..1449
                     /locus_tag="VIU37_11190"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6014569.1"
                     /translation="MPISDPVDRPLTARDPRLAPWRAFLLAHARVSRRLDEELRLEHD
                     LSIAEYDTLLTLALAPGRRMRMGPLAERVILSKSGVTRLVDRLVSDQLVERSACLADA
                     RGAEAVLTERGMARLRQASPTHLRGISEHFLSLLDDPDLAVIERCMSTVARQAGSEAD
                     DALLATEPAGPAAIGDR"
     gene            1455..2180
                     /locus_tag="VIU37_11195"
     CDS             1455..2180
                     /locus_tag="VIU37_11195"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY6014570.1"
                     /translation="MPGRLRVGTSGFAYAGWTPRFYPAELSAARRLEFYASRLTAVEL
                     NNTFYRQPSPAAVAAWLAATPDDFRFAIKAQRGGSFRALQLDPAGSVPWLTGPYRAFG
                     ARLGTVLFRVPEHVQRDDAHLAALLEAWPPDLPLTIEFQEPSWHVDETFAALARAGAA
                     LCTTELPEDAEPPTIRRTGSFLYLRLRRHDYTAGELAAWADRLEPFLVAGDDAFVFFR
                     HDDAGRGPELAQALAEAVAARTA"
BASE COUNT          313 a          886 c          857 g          312 t
ORIGIN      
        1 atcaggtgga tcagctcggc cgggcccttc cagtacggca cgtcgaagat ccggacatcg
       61 ccgccgacca gcgcggcggg ctggcgcgcc ccggcgtcgt tcgtccgcag cgtccgcccg
      121 atgcagaaca ggtcggggcg caaccagacg gtatcgccac cctcgaccgt cccgggcgcc
      181 tcgacccggc caaccgtcgg gatccccgcg gcgcgcgtcc agccctcgag cgcagcgggc
      241 tcggcggcgc ggttcggctt gcccggccgg agcgggatcg cgccacgatc ggtgatcagc
      301 agcggatcga acgtgtacac gaggtccggg ctgtcgagct cggtgtcgag gacgtggacc
      361 cgggggccga gccccgccag cgtcgcgacg aaggcgtcgt gctcgtgctg ggcgagcgcg
      421 agatccacgg gggggaggaa gccgtgggcc ggatcgtcga aggccgcgcc gaacgccggc
      481 ccgggacgct tgaccaacac gtcgagcaac ggggcggaca tgctctgggc gccgaaccgg
      541 cggtcggggg tcgtcatcgg gcgaaggata gcggcggggg gacttggcga cgcggggatc
      601 ggacggtacc ctccgcggat gtccggctat accgccagcg ccaggctcca cggcggctcc
      661 acacggttcg tggcggtcgc ggcggatcgc cggccgatca cccacgaacc ggtcgcgcca
      721 tctcccgaac gggccgatcg cgaacgcgcc gaacccgcac ggcggcccgc gttcgagcgc
      781 ctggcgtcga gctgggagga tctccgcgag gcgtgggcgc agacgacctt ctacctgttc
      841 gacccggaga gctggcgatg accggcgcgt ccggcgcgtc cggcgcgtcc ggcgcgaggg
      901 tgtaggatcg cgcgcatgcc catctccgat ccggtcgacc ggccgctcac cgcccgcgac
      961 ccgcgactgg cgccgtggcg tgcgttcctg ctcgcgcatg cccgggtgtc gcgtcgcctc
     1021 gacgaggagc tccgcctgga gcacgacctg tcgatcgccg agtacgacac cctcctgacg
     1081 ctcgccctcg ccccggggcg ccggatgcga atgggcccgc tcgccgagcg ggtcatcctg
     1141 agcaagagcg gcgtgacccg gctcgtcgac cggctggtca gcgaccagct cgtcgagcgc
     1201 agtgcctgcc tggccgatgc gcgaggagcc gaggcggtcc tgaccgagcg cgggatggcc
     1261 aggctccggc aggcctcgcc gacccacctg cgcgggatca gcgagcactt cctgtcgctc
     1321 ctcgacgacc ccgacctggc ggtcatcgag cgatgcatga gcaccgtcgc ccggcaggcc
     1381 ggttccgagg ctgacgacgc cctcctggcc acggagcccg cgggtccggc ggccatcggc
     1441 gaccgctgag cgtcgtgccc ggccggctcc gggtcggcac gagtggcttc gcctacgccg
     1501 gctggacgcc ccgcttctac ccggctgagc tatccgccgc tcgccggctc gagttctacg
     1561 cctcgcgatt gaccgcggtc gagctgaaca acacgttcta tcggcaaccg tccccggccg
     1621 cggtggcggc gtggctggcg gccacgcccg acgacttccg attcgcgatc aaggcgcagc
     1681 gtggcggatc cttccgcgcc ctccagctgg atccggccgg cagcgtgccg tggctgaccg
     1741 gcccctatcg cgcgttcgga gcgcggctcg gcacggtgct gttccgcgtc ccggagcacg
     1801 tgcagcggga cgacgcgcac ctggccgccc tgctcgaggc gtggccgccc gacctccccc
     1861 tcacgatcga gttccaggag ccgtcctggc acgtggacga gaccttcgcg gcgctcgcgc
     1921 gcgccggcgc agcactctgc acgaccgagc tgcccgagga tgccgagccg ccgacgatcc
     1981 gccgcaccgg gtcgttcctc tacctccggc ttcgccggca cgactacacg gccggtgagc
     2041 tcgccgcctg ggccgaccgg ctcgagccgt tcctggtcgc cggcgacgac gcctttgtct
     2101 tcttccggca cgacgacgcc ggacgcggcc cggaactggc acaggccctg gccgaggcgg
     2161 tcgcggcgcg aaccgcctga gtccgggcct tcagccgcgg gatccctcgg ccgggccgaa
     2221 gacgacgagg acctcgagcc gctcggcgat gtcgtggaag cggtgcggga cgcgggctcc
     2281 gacgaagacg agcgaacccg gccgcacgtc gcgggtctcg tcccccacgg tgatcctggc
     2341 ccggcccgag acgacgtggt acagctcg
//
LOCUS       DATDDI010000768         2363 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_37312, whole genome shotgun sequence.
ACCESSION   DATDDI010000768 DATDDI010000000
VERSION     DATDDI010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37312"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VIU37_11200"
     CDS             <1..294
                     /locus_tag="VIU37_11200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014571.1"
                     /translation="PLAVGGYVVDTPGMREVGTWGIGPEELGACFPDFRPYLDSCRFD
                     NCRHLAEPGCAVRGAAATGHVDPDRLVSYERIYEEISVPSWSNARRRGSRPSA"
     gene            complement(239..592)
                     /locus_tag="VIU37_11205"
     CDS             complement(239..592)
                     /locus_tag="VIU37_11205"
                     /inference="COORDINATES: protein motif:HMM:NF015758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEY6014572.1"
                     /translation="MSTLILATETPVAFREAQTAVDRWVSQYKEGYFSPLTNLARLSE
                     EVGELAREINHRFGEKPKKADEAEGDLAMELGDILFVVVCLANSQGIDLDEAFAAVMR
                     KVATRDAERWTRKER"
     gene            579..1838
                     /locus_tag="VIU37_11210"
     CDS             579..1838
                     /locus_tag="VIU37_11210"
                     /inference="COORDINATES: protein motif:HMM:NF018004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 domain-containing protein"
                     /protein_id="HEY6014573.1"
                     /translation="MSVDTSLVTPFVGERYADGAALSRLIAPPYDVISQEARRRYAAA
                     DPHNIVHLILPEAAGDVNRYRAAAEHLAAWRAESVFRADSAPSVYVVAQTFSTPAGER
                     LTRVGMFAAVSAEPYETRRIRPHEKTHRGPKVDRLDLLRATHANLESIFLLAPDREGT
                     LAGGLRGIVAGPRAPDASADLDGVQIRLWVQSGLEADHLAAAAAAPLYIADGHHRYET
                     AVAYAGENPAARRLLAFVVSARDPGLVVLPTHRVVYAADRDVSALASVWQRFFEVRPV
                     PPPADRVRLLEEAGRGRVACIVATEGGQHDLLLTLRDDAPLDDIVELGRTPAVRGLDV
                     AIVERLVVGEILGAGKSTPTLTYTPDPAPALQVAHLGKALAAVLLNATKVDQVFAVAD
                     AGDVMPPKSTYFIPKVPSGLVLRRVDA"
     gene            1856..2116
                     /locus_tag="VIU37_11215"
     CDS             1856..2116
                     /locus_tag="VIU37_11215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014574.1"
                     /translation="MPGRPRERILANLETVYREAYDRAKAAGDERRMLDLDAAYQREQ
                     LLLEVLLDIRDGLQAAAPPREAAPGVDPLAALDTIRRVTKLR"
     gene            2134..>2363
                     /locus_tag="VIU37_11220"
     CDS             2134..>2363
                     /locus_tag="VIU37_11220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014575.1"
                     /translation="MRHVLPAAGLSVLLVVACGGPKADTVVVNGMVWTGLSSGDARPG
                     AVAIRAGKILAVGDSADVARTVGSRTAVIDARG"
BASE COUNT          313 a          881 c          790 g          379 t
ORIGIN      
        1 ccgctcgcgg tcggcggcta cgtggtcgac acgcccggca tgcgcgaggt cgggacctgg
       61 gggatcgggc ccgaagagct gggcgcgtgt tttccggatt tccggccgta tctcgattcc
      121 tgtcgcttcg acaactgccg ccacctggcc gagcccggct gcgcagtgcg gggggcggcg
      181 gcgaccggcc acgtcgaccc cgaccggctc gtgtcctacg agcggatcta cgaggagatc
      241 agcgttcctt cctggtccaa cgctcggcgt cgcgggtcgc gaccttccgc atgaccgcgg
      301 cgaacgcctc gtccaggtcg atgccctgcg agttcgcgag acacacgacc acgaacagga
      361 tgtcgccgag ctccatggcg agatcgcctt ccgcctcatc cgccttcttg ggcttttccc
      421 cgaaccgatg gttgatttcg cgggccagct cgcccacttc ctcgctcaac cgggccaggt
      481 tcgtgagcgg gctgaagtag ccttccttat attgactgac ccagcggtcc accgcggtct
      541 gggcttcgcg aaacgccacg ggagtctccg tcgccagaat gagtgtcgac acgtcgctcg
      601 ttacgccgtt cgtcggtgag cgctatgccg acggggccgc gctctcccgt ctcatcgcac
      661 ctccctacga cgtcatttcc caggaggcgc ggcggcggta cgcggccgcg gacccgcaca
      721 atatcgtcca tctgattctc ccggaagccg cgggcgacgt gaaccgctac cgcgcggccg
      781 ccgagcacct ggctgcatgg cgcgcggaga gcgtgttccg cgccgattcc gctccgtccg
      841 tctacgtcgt ggcccagacc ttctccacgc ccgccggcga gcgactcacg cgcgtcggca
      901 tgttcgccgc cgtctcggcg gagccgtacg agacgcgccg gatccgtccc cacgagaaga
      961 cccatcgcgg gccgaaggtg gaccgcctcg atctgctgcg cgcgacgcat gccaatctgg
     1021 aatccatctt cctgctcgcg cccgatcgag aggggacgct ggcgggtggg ctccgcggca
     1081 tcgtggcagg cccgcgagcg cccgacgcct cggcggacct ggacggcgtc cagatccgcc
     1141 tctgggtcca gtcgggtctc gaggccgacc acctagccgc ggcggcggcg gcaccgctct
     1201 acatcgccga cggccaccac cgctacgaga ccgcggtcgc ctacgccggg gagaacccgg
     1261 cggcgcggcg gctgctcgcc ttcgtcgtct cggcacgcga tcccggcctc gtcgtcctcc
     1321 cgacgcatcg ggtggtttac gccgcggacc gcgacgtgtc cgcgctcgcg agcgtctggc
     1381 agcggttctt cgaagtccgg cccgtcccgc ctcccgccga ccgcgttcgt ctcctcgaag
     1441 aggcggggcg tgggcgcgtc gcctgtatcg tcgccacgga gggcgggcag cacgacctgc
     1501 tgctgacgct gcgggacgac gcgccgctcg acgacatcgt ggagctcggc cggacccccg
     1561 cggtgcgcgg cctggacgtg gcgatcgtgg agcggctcgt cgtcggcgag atcctcgggg
     1621 cggggaagtc cacgccgacc ctcacctaca cgcccgatcc cgccccggcg ctgcaggtcg
     1681 cgcatctggg gaaagcgctc gccgccgtcc tcctcaatgc gacgaaggtc gaccaggtct
     1741 tcgcggtcgc cgacgcgggc gacgtgatgc cgccgaagtc gacgtacttc atcccgaagg
     1801 tgccgagcgg cttggtgctc cgccgcgtgg acgcctgacg gtatattccc gctccatgcc
     1861 cgggcgtccc cgcgagcgca tcctcgccaa ccttgagacg gtctaccgcg aagcctacga
     1921 ccgggcgaaa gccgcgggcg acgagcgtcg catgctcgat ctcgacgccg cctatcagcg
     1981 cgagcagctc ctgctcgaag tcctgctcga catccgcgac ggcctccagg cggctgcccc
     2041 gccgcgtgag gctgccccgg gcgtcgatcc gctggccgcg ctcgacacca tccgccgcgt
     2101 taccaagctc cgttgaccgg gagaatcccc cgcatgcgcc acgtcctgcc cgccgccggc
     2161 ctctccgtgc tgctcgtcgt cgcctgtggc ggtcccaagg ccgataccgt ggtcgtgaac
     2221 ggcatggtct ggacggggct gtcttcggga gacgcgcggc cgggagccgt cgcgatccgt
     2281 gcagggaaga ttctcgccgt gggcgattcc gcggacgtcg cccggaccgt cggatcgcgc
     2341 accgccgtca tcgatgcccg cgg
//
LOCUS       DATDDI010000769         2239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_245459, whole genome shotgun sequence.
ACCESSION   DATDDI010000769 DATDDI010000000
VERSION     DATDDI010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245459"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..935)
                     /locus_tag="VIU37_11225"
     CDS             complement(<1..935)
                     /locus_tag="VIU37_11225"
                     /inference="COORDINATES: protein motif:HMM:NF039823.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5667 domain-containing protein"
                     /protein_id="HEY6014576.1"
                     /translation="MDDRDTEDVELAERLKAYAEARLSPSLSATSRMRTHVMAAAHRQ
                     AALARADADRAVVDRAALAMAQAASRPRSIVAPRWRRPVAALLAASLTLALAVGSVAA
                     ARPGGPLYGTRIWAESLTLPSSAAERAAAEVRRLDDRLAEAAEALAAGDANAAAAALA
                     AYDAILAEATAGTHGNPVANSTLDSAVRRNIEVLTILLGRVPDQAKDAIQHAIDQSGA
                     TTNDLQGKPGVGVPPPSNPGNGPAATNKPDRTPNPNKPTAAPNPTPKSNENATQKPKP
                     SPPEHPTPKPKPTPDGAAATAAAPATPDHTPKAGGR"
     gene            complement(940..1524)
                     /locus_tag="VIU37_11230"
     CDS             complement(940..1524)
                     /locus_tag="VIU37_11230"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6014577.1"
                     /translation="MSLDDAAIERLVDEARSGDALAFGQLFDHFHLPVYRYIVSRVHS
                     PADTEDLTQLVFVKALEALPRYESRGIPFGGWLFRLARNAVVDFTRTRHEHADLDAVV
                     DRGTGTPGPEDVAVIRQQLDAMAAALAALTDDQREAIELRFFAGLSAREAADVMGRQE
                     GTIRGLQFRAIAALRRNLGMQELTVTSSDEQTDG"
     gene            complement(1521..>2239)
                     /locus_tag="VIU37_11235"
     CDS             complement(1521..>2239)
                     /locus_tag="VIU37_11235"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY6014578.1"
                     /translation="PAFEYASFADRERVVRKAAERWGPQGVTIRFGVELTYDRTWESD
                     IRDHLARHAYDFTIGSVHDRVDSVYNPSRVRGWVAGRSLAEIVEPAFTEVEAAARSGM
                     FDALGHLDVVKRYLHPYVTATDLAGAPELYEPILRALVESGTALEINTSGLRHPVAET
                     YPAAPIVARFHELGGRAVTIGSDAHRRDHFGWALADGYHEAEAAGFDALSFRRGGGRV
                     SIPMPVGNGPGPNGPDGRSL"
BASE COUNT          306 a          756 c          829 g          348 t
ORIGIN      
        1 cgaccacccg ccttcggcgt gtggtcgggg gtcgcgggtg cggcagcggt ggcggctgcg
       61 ccatcgggcg tgggtttcgg cttgggcgtc gggtgctcgg gaggggaggg cttgggcttc
      121 tgggtcgcgt tctcgttcga cttcggcgtc ggattgggcg cggccgtggg cttgttgggg
      181 ttcggcgtcc ggtccggctt gttggtggcc gccggtccgt tgcccgggtt cgaaggcggt
      241 ggcacgccga caccgggctt gccctgcagg tcgttcgtcg tcgcgccact ctggtcgatg
      301 gcgtgctgga tcgcgtcctt ggcctggtcg ggaacgcgcc cgagcaggat cgtcaggact
      361 tcgatgttgc ggcggacggc cgagtcgagc gtcgagttcg cgaccggatt cccatgcgtg
      421 ccggccgtcg cttcggcaag gatcgcgtca tacgccgcga gcgccgcagc ggccgcgttc
      481 gcgtcgccgg cggccagggc ctctgcggct tccgccaggc ggtcgtcgag gcgccggacc
      541 tcggccgcgg cgcgctcggc agccgacgac ggaagggtca ggctctcggc ccagatccga
      601 gtgccataca acggaccgcc aggccgggca gcggcgacgg agccgacggc gagcgcgagc
      661 gtcaggctcg cggccagcaa ggccgcgacc ggccgccgcc atcgaggtgc gacgatgctc
      721 cgcggccgcg atgcggcctg ggccatggcg agcgcagctc gatcgacaac cgcccgatcc
      781 gcgtcggcgc gcgccagggc ggcctgccgg tgggcggcgg ccatcacgtg ggtgcgcatc
      841 cgcgacgtgg ccgacaggct cggggacagc cgcgcctccg cgtacgcctt gaggcgttcc
      901 gcgagctcga cgtcctcggt atcccggtcg tccatccgat catccatccg tctgttcgtc
      961 actgctcgtt acggtcagtt cctgcatgcc aaggttccgt cggagggcgg cgatggcgcg
     1021 gaactggaga ccgcgaatcg ttccttcctg ccggcccatg acgtcggccg cctcgcgagc
     1081 cgacaggccg gcgaagaagc gcaattcgat cgcctcacgc tggtcgtcgg tgagcgccgc
     1141 gagcgcggcg gccatcgcgt ccagctgctg gcggatcacc gccacgtcct ccggtcccgg
     1201 agtgccggtg ccgcgatcga caacggcgtc caggtcggcg tgctcgtggc gcgtcctggt
     1261 gaaatccact acggcgttcc gggccagccg aaagagccag cccccgaagg gaatgccccg
     1321 cgactcgtat cgcggaagcg cttccagggc cttgacgaag accagctgcg tcaggtcctc
     1381 cgtgtccgcc gggctgtgga cgcggctgac gatgtagcgg tagaccggga ggtggaagtg
     1441 atcgaagagc tggccgaagg ccagggcatc tccggatcgt gcttcgtcca ccaaccgctc
     1501 gatcgcggcg tcgtcaagac tcacaacgaa cgtccgtccg gaccgttagg accaggacca
     1561 ttgccgaccg gcatcgggat cgacacgcgt ccgccgccgc gacggaagct gagtgcgtcg
     1621 aatccggccg cctcggcctc gtggtagccg tccgcgagcg cccagccgaa gtggtcgcgc
     1681 cgatgcgcgt cgctgccgat cgtcacggcg cggccaccca gctcgtggaa gcgggcaacg
     1741 atcggtgccg cgggatacgt ctccgcgacc gggtggcgaa ggccgctcgt gttgatctcg
     1801 agcgccgtcc cgctctcgac gagcgcgcga aggatgggct cgtagagctc gggtgcgccg
     1861 gccaggtcgg tagcggtcac gtacgggtgg agatagcgct tcacgacgtc gaggtggccg
     1921 agcgcgtcga acatcccgga acgggcggcg gcctcgacct ccgtgaacgc cggctccacg
     1981 atctcggcca acgatcgtcc ggcgacccag ccgcgcacgc gtgacgggtt gtagaccgaa
     2041 tcgacccggt cgtgcacgga accgatcgtg aagtcgtagg cgtggcgcgc caggtggtcg
     2101 cggatgtcgg attcccaggt gcgatcgtag gtcagctcga ccccgaagcg gatcgtcacc
     2161 ccctgcggac cccaccgctc ggccgccttg cgaacgacgc gctcgcgatc ggcgaacgat
     2221 gcgtattcga aggcggggg
//
LOCUS       DATDDI010000770         1523 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_370484, whole genome shotgun sequence.
ACCESSION   DATDDI010000770 DATDDI010000000
VERSION     DATDDI010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370484"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..1101)
                     /locus_tag="VIU37_11240"
     CDS             complement(151..1101)
                     /locus_tag="VIU37_11240"
                     /inference="COORDINATES: protein motif:HMM:NF033577.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HEY6014579.1"
                     /translation="MLHRTAKLTPSGRRLLVERILIEGWPPATAAEMVGVSRATAYKW
                     LRRYRAEGLAGLDDRSSRPHRRPRALPDREVRRILRARRRLRVGPHRLGPLLGHPRST
                     VYDILRRHGSSRLAHADRVTGVPVRYVRERPGELVHLDVKRLGRVPPGGGHRMLGDGA
                     RHRDPIGYDFLHVAIDDATRVAYVAVRPDEQAASTVSFVREVVTFFDGLGVQVERVMT
                     DNAWTYTHSRDLAAVLHELGIRHIRIRPRRPQTNGKAERFIGSLQREWAYARLFRSND
                     ERLATLPPWVAAYNRRRPHAGLHGQAPMSVLVSKVDGNDT"
     gene            complement(1190..>1523)
                     /locus_tag="VIU37_11245"
     CDS             complement(1190..>1523)
                     /locus_tag="VIU37_11245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014580.1"
                     /translation="VLSQQLPDHIQTRLGAIQSSGAAADELAATGGNAQALFDPVRLA
                     SLPGVDVLAIRLALADTLHTIFLDAAFAIALSAIASLFLREVPISGHMGEEPAEEIEV
                     DGEPALAA"
BASE COUNT          237 a          505 c          548 g          233 t
ORIGIN      
        1 gttctccctt gagtggccac caagatcggg tcggttccag gacttccccg agatcgaccg
       61 cgttgcctgg ttcgacgtcg aagaagcgcg ccgccgtctc aagcccgcac aggtgccgtt
      121 catcgagcgg ctcctcgcca cgctcggcga ctaggtgtcg ttcccgtcga ccttgctgac
      181 gaggacggac atcggagcct gaccgtggag cccggcgtgg ggacgtcgcc gattgtaggc
      241 agcgacccag ggcgggaggg tcgccagccg ctcatcgttc gatcggaaca gccgggcgta
      301 tgcccattcc cgttgcaggc tgccgatgaa ccgctcggcc ttgccgttcg tctgcggtcg
      361 ccgggggcgg atccggatgt gtcggatccc gagttcgtgg agcaccgccg ccaggtcacg
      421 agagtgggtg tacgtccagg cgttgtcggt catcacccgc tcgacctgga ccccgagccc
      481 gtcgaagaag gtgacgacct cccggacgaa gctgaccgtg ctggcggcct gctcgtcggg
      541 ccggacggcg acgtacgcca cgcgagtggc gtcgtcgatg gcgacgtgca ggaagtcgta
      601 cccgatcggg tcccgatgac gggcgccgtc gccgagcatc cggtgaccgc ccccgggcgg
      661 gacccgaccg aggcgcttga cgtcgaggtg gacgagttcg cccggccgct cgcgcacata
      721 gcgcaccggg acgccggtga cccggtcggc atgggccagc cggctggaac catggcggcg
      781 caggatgtcg tagacggtcg atcgagggtg gccgagcaac ggtccgaggc ggtggggccc
      841 gacgcgcagt cgacgcctcg cgcgcaggat ccggcggacc tcccggtccg gcagcgctcg
      901 aggtcgtcga tgtggtcgcg acgaccgatc gtcgagaccg gccagaccct cggcgcggta
      961 tctgcgcagc cacttgtacg cggtcgctcg gctgaccccc accatctcgg cagcggtcgc
     1021 cggcggccag ccctcgatca ggatccgctc gaccaggagc cgtcggccgg acggcgtcag
     1081 cttggccgta cgatggagca cgagagccct ccttcggttc ggagcttcga caaccccaaa
     1141 ccgagcacca gggctctcag tttgtcaacg atgtggacgg gaacgacacc taggcagcga
     1201 gcgcaggttc gccgtcaacc tcgatttcct cggccggttc ctcacccatg tgtccgctga
     1261 tcggcacttc cctcaggaat agcgaggcga tggccgagag ggcgatcgcg aaggccgcat
     1321 ccaggaagat ggtgtggagc gtgtcagcga gggccagtcg gatcgcgagg acgtcgactc
     1381 ccggcagcga cgcgaggcga accgggtcga acagcgcctg ggcgtttccg ccggtcgcgg
     1441 cgagctcgtc ggccgcggcg ccggaggatt ggatggcgcc caggcgagtc tggatgtgat
     1501 ccgggagctg ctgcgagagg acc
//
LOCUS       DATDDI010000771         2559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_391180, whole genome shotgun sequence.
ACCESSION   DATDDI010000771 DATDDI010000000
VERSION     DATDDI010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391180"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VIU37_11250"
     CDS             <1..215
                     /locus_tag="VIU37_11250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014581.1"
                     /translation="PDSIRVELGGSTVSSRLSIDREGAVVATANGEALVLFTPNPVLP
                     LRLSSLAVTSSGLELHGTLDVGALLR"
     gene            263..2512
                     /locus_tag="VIU37_11255"
     CDS             263..2512
                     /locus_tag="VIU37_11255"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEY6014582.1"
                     /translation="MATIHPRTKTPTEERAPRRGPRRPSVVPAAHSAQQPDLEALRRR
                     LYAAILAEHPGVDLDGVGQAFDLAVVAHEGQPRATGEPYVTHPIATAQTLAELGLDTV
                     AIQAALLHDVPEDTEYSLTDVEERFGSEVAQLVDGVTKLSKFSTHSHEQQQAENIRKM
                     LLAMAQDIRVVLIKLADRLHNMRTLYGLPIEKQLRIARQTMEIYAPLAERLGIWQMKW
                     ELEDLAFKTLEPERFRELAKLLDTRRVGRESYIDRAIAELRPRLEAAGIEVDLQGRPK
                     HIYSIYKKMERKGAEFGEIYDVYAIRILVNDVRDCYAALGIVHSIWRPIPGQFDDYIA
                     VPKNNLYQSLHTAVIALDGKPLEIQIRTHQMHQISEVGIAAHWRYKEGTKSDREYDAK
                     LAWLRQLLDWQRDVSDATEFVEGIKLDIFQDQVFVFTPKGDIKDLPAGATPLDFAYRI
                     HTDVGHRTIGAKVNNRLVPLDYRLKNGDIVEVVTTKGEHGPSRDWMNVVRTSHAREKI
                     RQWFKRKDRDENIVHGKDSLDRELRRLARTSTAAIGPDRILEVAKQYNFEALDDFFAA
                     VGYGAVSAQSVVMRLGVVDDTQGTLPTVAPVPHVPRTGGVRVKGVGDLLVRFAKCCHP
                     IPGDPIVGFITRGKGVTVHLRSCPTVVNEREVSRLIEVEWEAAPTQTYPIAIRVEAYD
                     RTGLLSDITQVVAENKVNILAAQVAVTSDHTAVVTATLQVASVSQLAKVMSRIETLKD
                     VITVQRDLG"
BASE COUNT          443 a          925 c          833 g          358 t
ORIGIN      
        1 gtccggactc gatccgggtc gagctcggcg ggtcgacggt gagtagtcgc ctgtcgatcg
       61 atcgggaggg cgcggtcgtg gccacggcga acggcgaagc cctcgtcctg ttcaccccga
      121 acccggtcct gcccctccgc ctgtcgtcgc tggccgtgac gtcgtccggg ctcgagcttc
      181 acgggacgct cgacgtcggc gcgctcctgc ggtaggccgc gcccggccgt tcgcgccggg
      241 gccgctgcta tcctgatcga ccatggccac gattcatcca cgcacgaaga cgccgaccga
      301 ggaacgcgcc cccaggcgcg ggccgcgccg gccgtcggtc gtgccggccg cccattcggc
      361 ccagcagccg gatctcgagg ccctgcgccg caggctctac gccgcgatcc tggccgagca
      421 ccccggggtt gacctcgacg gcgtcggcca ggcgttcgac ctggcggtcg tcgcccacga
      481 gggccagcca cgcgccaccg gcgagccgta cgtcacgcat ccgatcgcca cggcccagac
      541 gctcgccgag ctcggcctcg acaccgtcgc gatccaggcg gccctgctcc acgacgtccc
      601 cgaagacacc gagtacagcc tgaccgacgt ggaggagcgc ttcgggtcgg aggtcgccca
      661 gctcgtcgac ggcgtcacca agctgtccaa gttcagcacc cacagccacg agcagcaaca
      721 ggccgagaac atccggaaga tgctcctggc gatggcccag gacatccggg tcgtcctgat
      781 caagctggcc gaccggctcc acaacatgcg cacgctgtac ggcctgccca tcgagaagca
      841 gctccggatc gcccgccaga cgatggagat ctacgcgccg ctggccgagc ggctcgggat
      901 ctggcagatg aagtgggagc tcgaggatct cgccttcaag acgctcgagc ccgagcggtt
      961 ccgcgagctg gccaagctgc tcgacacgcg gcgggtcggt cgtgagagct acatcgatcg
     1021 ggcgatcgcc gagcttcgcc cgcggctcga ggccgccggc atcgaggtcg acctgcaggg
     1081 ccggcccaag cacatctaca gcatctacaa gaagatggag cgcaagggcg cggagttcgg
     1141 cgagatctac gacgtctacg ccatccggat cctggtcaac gacgtgcgcg actgctacgc
     1201 cgcgctcggg atcgtccatt cgatctggcg tcccatcccc ggccagttcg acgactacat
     1261 cgcggttccc aagaacaacc tctaccagtc gctccacacg gccgtgatcg cgctcgacgg
     1321 caagccgctc gagatccaga tccggaccca ccagatgcac cagatcagcg aagtcgggat
     1381 cgccgcccac tggcgctaca aggaaggcac caagtcggac cgcgagtacg acgccaagct
     1441 cgcctggctc cgccagctgc tcgactggca gcgcgacgtc tccgacgcca ccgagttcgt
     1501 cgagggaatc aagctcgaca tcttccagga ccaggtcttc gtgttcaccc ccaagggaga
     1561 catcaaggac ctgccggcag gcgccacgcc gctcgacttc gcctaccgga tccacaccga
     1621 cgtcggccac cggacgatcg gtgccaaggt caacaatcgg ctcgtcccgc tcgactaccg
     1681 gctcaagaac ggcgacatcg tcgaggtggt cacgaccaag ggcgagcacg gtccgtcgcg
     1741 cgactggatg aacgtcgtcc ggaccagcca cgctcgcgag aagatccgcc aatggttcaa
     1801 gcgcaaggac cgcgacgaga acatcgtcca cggcaaggac tcgctcgatc gcgagctccg
     1861 gcggctggcc cgcacgtcga cggcggcgat cgggccggac cggatcctgg aggtcgcgaa
     1921 gcagtacaac ttcgaggccc tcgatgactt cttcgccgcg gtcggctacg gcgcggtcag
     1981 cgcccagtcg gtcgtcatgc gacttggcgt ggtcgacgac acgcagggaa cgctgccgac
     2041 cgtggcgccg gtgccgcacg tccccaggac cggcggcgtg cgggtcaagg gcgtcggcga
     2101 cctgctggtc cgcttcgcca agtgctgcca cccgatcccg ggcgacccga tcgtcggctt
     2161 catcacccgg ggcaagggcg tcaccgtgca cctgcggtcc tgtcccacgg tcgtcaacga
     2221 gcgcgaggtc agccggctca tcgaggtcga gtgggaggcg gccccgaccc agacctaccc
     2281 gatcgccatc cgggtggagg cgtacgaccg gaccggcctg ttgagcgaca tcacccaggt
     2341 cgtggccgag aacaaggtca acatcctggc cgcgcaggtg gcggtcacct cggatcacac
     2401 cgccgtggtc acggcgacgc tccaggtcgc gtcggtgtcg cagctggcca aggtgatgag
     2461 ccggatcgag acgctcaagg acgtcatcac cgtccagcgc gacctcggct gacgccagcg
     2521 tcggcgatgc ccaccttccg agctccgcgc gggacgcgg
//
LOCUS       DATDDI010000772         1671 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_495270, whole genome shotgun sequence.
ACCESSION   DATDDI010000772 DATDDI010000000
VERSION     DATDDI010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495270"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..1416)
                     /gene="obgE"
                     /locus_tag="VIU37_11260"
     CDS             complement(124..1416)
                     /gene="obgE"
                     /locus_tag="VIU37_11260"
                     /inference="COORDINATES: protein motif:HMM:NF008954.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEY6014583.1"
                     /translation="MFLDQVKVWLRAGDGGDGASTFRREAHVPRGGPDGGDGGRGGTI
                     HLRVDPGQTTLRDFRYHHHFRAAPGGRGTRAKRHGKAGEDLILDVPPGTAVYDDASGE
                     LVADLVATGQSVAAARGGRGGLGNAHFATSTHQAPKHAQKGEPGEERWVRLELRLIAD
                     VGLVGLPNAGKSTLLAALTAARPKIADYPFTTLEPNLGVLELPDGRRPTIADVPGLIE
                     GASEGAGLGHAFLRHVERTRILLQVVDGAARDPAWDWGVIRDELAAHDPALLDKPTLA
                     VFNKLDLVAAAEAWPAFRAARQRDGIPVVAVAAAIGEGIDGLVAAVADLLPSAEELAA
                     PPEPAGVVVHRIEPMDEPVTVTRDPDGAYRIHSRRLERLADRIDFSIDESVQRFQRDL
                     ERLGADAELRRAGVDDGDTVRVGDHELEWAAAPWEPAR"
BASE COUNT          204 a          633 c          620 g          214 t
ORIGIN      
        1 gctcgaggcc gaggacctcg cgcgcctcct ccgcgatcgc gaggtgaccg acgtggatcg
       61 gatcgaacgt cccgcccatg atcccgatcg agccgggccg cacccgggcc gcggccgcca
      121 ccgtcatcgg gctggctccc acggcgccgc cgcccactcg agctcgtgat ccccgacccg
      181 cacggtgtcg ccgtcgtcga ccccggcccg ccgcagctcg gcgtcggccc cgagccgctc
      241 gaggtcgcgc tggaaccgct ggaccgactc gtcgatcgag aagtcgatcc ggtccgcgag
      301 ccgctccagg cggcggctgt ggatccgata cgccccatcg gggtcgcggg tgacggtgac
      361 cggctcgtcc atcggctcga tccggtggac gacgacgccc gcgggctcgg gcggcgcggc
      421 gagctcctcg gcgctcggca ggaggtccgc gaccgcggcg acgaggccgt cgatcccctc
      481 gccgatggcc gcggccaccg ccacgaccgg gatgccgtca cgctgccgcg cggcccggaa
      541 ggccggccac gcttcggcgg cggccacgag gtcgagcttg ttgaagaccg cgagcgtggg
      601 cttgtccagc agcgccgggt cgtgggccgc gagctcgtcg cgaatcacgc cccagtccca
      661 cgccggatcc cgggccgcgc cgtccacgac ctggagcagg atccgcgtcc gctcgacgtg
      721 gcgcaggaac gcatggccga ggcccgctcc ctcgctggcc ccctcgatga ggcccggcac
      781 gtcggcgatc gtcgggcgcc ggccgtcggg cagctccagg acgccgaggt tcggctcgag
      841 ggtcgtgaac gggtagtcgg cgatctttgg gcgagcggcg gtcagcgccg ccaggagcgt
      901 cgacttgccg gcattcggca acccgacgag cccgacgtcg gcgatgagcc ggagctcgag
      961 gcggacccag cgctcctcgc cgggctcgcc cttctgggcg tgcttcgggg cctggtgggt
     1021 cgacgtggcg aagtgggcgt tgccgaggcc cccgcggccg ccccgcgccg ccgcaaccga
     1081 ctggcccgtg gcgacgagat cggcgacgag ctcgccgctg gcgtcgtcgt agaccgcggt
     1141 gccgggcggg acgtcgagga tcaggtcctc gccggccttg ccgtggcgct tcgcccgcgt
     1201 gccgcggccg ccgggcgccg cccggaagtg gtggtgatag cggaagtcgc ggagggtcgt
     1261 ctggcccgga tcgacccgaa ggtggatcgt gccgccgcgt ccgccgtcgc cgccgtcggg
     1321 gccgccccgg gggacgtgcg cctcacgccg gaaggtcgag gcgccgtcgc cgccatcgcc
     1381 ggcgcgcagc cacaccttca cctggtcgag gaacatctgg gatctatctt cgcacgggct
     1441 gcgcgagcgg ccgtggcgtc ccgcgtcggg aacggagccg gcatccctgc cggcggcagc
     1501 tcagcggcga gcgccctgac tcagtagtac cgcagcgggt tgacgcggta cgacccgctc
     1561 ttccacgggt agccgatcca gacctcgaag tggcaatgcg ggccggtcgc ccagccgctc
     1621 atgccgaccc ggccgacctg ctggccacgc gacacgacct ggccgacgct c
//
LOCUS       DATDDI010000773         1606 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_578183, whole genome shotgun sequence.
ACCESSION   DATDDI010000773 DATDDI010000000
VERSION     DATDDI010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578183"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..886
                     /locus_tag="VIU37_11265"
     CDS             134..886
                     /locus_tag="VIU37_11265"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEY6014584.1"
                     /translation="MSRVQSIERAFAVLGALADGPIGVTEVAERAGLPKSTAARLLAS
                     LAREGVVEQVPGGTRYRLGQRLVTLAARIRPAGSLAALARPALTELATSVGEAAGLSV
                     PDGYLVHYIDQVSSPKPVSVRDWTGTRIPMHAVSSGQVLLAFAPPVFVQRYLGRPLER
                     FTDRTLVTAADLLERMRAIRRDGFVWAPEEFDEGISSIAAPVADASGEVVAAVHLHGP
                     SYRFPAPGTQTAIAERVVTAAARIAGSLRRAG"
     gene            complement(928..>1606)
                     /locus_tag="VIU37_11270"
     CDS             complement(928..>1606)
                     /locus_tag="VIU37_11270"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEY6014585.1"
                     /translation="GEHLREARRTRRLSLRDLAERLGVSPSLISQIETGRANPSVSTL
                     YAIAAELDVSLDELLFSDRLSATAASPVVAPADAPPGSMTHGGGPIQRAADRHVIRLA
                     SGVLWERLTTASEPGVEFLLVTYEVGGASSPEDAYQRHSGHEWGYVLSGKLEVRMGFD
                     EYVLSPGDSISINSSMPHRLANIGDVPVQAIWFVLGRAEFDAQTLFEDRASRPRARSG
                     GTANHAG"
BASE COUNT          214 a          606 c          553 g          233 t
ORIGIN      
        1 atcgactggt ctcctcggcg tttcgggcgg cgggtggggg tcacggttcc gagatctgcg
       61 ggttccacga tgtggaactg tgccgtatga tggaaccgcg gtcggagcgc gaatctagtc
      121 cagcgggagc cggatgtcca gagtccagtc catcgagcga gccttcgcgg tgctcggggc
      181 gcttgcggac ggcccgatcg gcgtgaccga ggtcgccgag cgcgccggcc tccccaagtc
      241 gaccgccgcg cgcctcctgg cgtcactcgc gcgcgaaggc gtcgtcgagc aggtccccgg
      301 cggaacccgg taccgattgg gccagcgcct cgtgaccctc gctgcccgca tccgcccggc
      361 cggctcgctc gccgcccttg cccgcccggc gctcaccgag ctcgccacga gcgtcggcga
      421 ggccgccggc ctgagcgtcc ccgatggcta cctcgtccac tacatcgacc aggtgagcag
      481 ccccaagccg gtctcggtca gggactggac cggcacccgg atcccgatgc acgcggtctc
      541 atccggccag gtgctcctgg ccttcgcgcc gcccgtgttc gtccagcgct acctgggtcg
      601 cccgctcgaa cgcttcacgg accggacgct cgtgaccgcc gccgatctgc tcgagcgcat
      661 gcgcgcgatc cgccgcgacg gcttcgtctg ggcgcccgaa gaattcgacg aggggatctc
      721 gtcgatcgcc gccccggtcg ccgacgcctc gggcgaggtg gttgccgccg tccacctcca
      781 cggcccgtcg tatcgcttcc ccgcgccggg cacccagacg gcgatcgccg aacgggtcgt
      841 cacggccgcc gcacgcattg ccgggagtct gcgccgggcc gggtgaggtc gcccattccc
      901 gcgacagccg agccgcggaa cgctcgatca gcccgcgtgg ttcgccgttc cgccgctccg
      961 tgcgcggggc cgcgacgctc gatcctcgaa gagcgtctgc gcgtcgaact ccgcccgccc
     1021 gaggacgaac cagatcgcct ggaccggcac gtcgccgatg ttggcgagcc ggtgcggcat
     1081 ggacgagttg atcgagatcg agtcaccggg cgacagcacg tactcgtcga agcccatcct
     1141 gacctcgagc ttgccgctga gtacgtaccc ccactcatgc ccggaatggc gctggtacgc
     1201 atcctccggg ctcgatgccc cgccgacctc gtaggtcacg aggaggaact cgacgccggg
     1261 ctccgaggcc gtggtgaggc gctcccagag gacgcccgag gcgaggcgga tcacgtgccg
     1321 atcggcggcg cgctggatcg ggccgccacc atgcgtcatc gagccgggcg gggcgtccgc
     1381 cggcgccacc acgggactcg ccgccgtcgc ggacagccgg tcgctgaaca gcagctcatc
     1441 gagcgagacg tcgagctccg cggcgatcgc gtagagcgtg ctcaccgacg ggttcgcgcg
     1501 cccggtctcg atctgcgaga tcaggctggg cgacacgccg agccgctcgg ccaggtcccg
     1561 caggctcagc cgtcgcgtgc gcctcgcctc gcgcaggtgc tccccc
//
LOCUS       DATDDI010000774         1996 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_724095, whole genome shotgun sequence.
ACCESSION   DATDDI010000774 DATDDI010000000
VERSION     DATDDI010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724095"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VIU37_11275"
     CDS             <1..300
                     /locus_tag="VIU37_11275"
                     /inference="COORDINATES: protein motif:HMM:NF019149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEY6014586.1"
                     /translation="VDPTWAVTVRRIFELAGEGRSVRAIAAAVSDERRSWSPRTVHDI
                     LRNPVYAGRMVRYRRGAKDRYYRPDGVEGRAELGQVPAIIEEALWAGAQAGRRAA"
     gene            complement(297..767)
                     /locus_tag="VIU37_11280"
     CDS             complement(297..767)
                     /locus_tag="VIU37_11280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014587.1"
                     /translation="MTDGVGEHVRRDDEADARRASRDRDAGELAARRDNTLYLDAVEA
                     LRDDVREDIGHLRDDVREDIREVRGVVTEFIVKHGADHTAQRLESEAAHQRFDSFIKS
                     TEIAQARKDGALGVFRFVLEHLSRNIRPIAAIAGACAVTIAALAGAIHIEVAIR"
     gene            complement(764..1003)
                     /locus_tag="VIU37_11285"
     CDS             complement(764..1003)
                     /locus_tag="VIU37_11285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014588.1"
                     /translation="MDRFAAFLDAVRGTLKGEPLRAIGYGAGVIIYLVAKASGKIPDV
                     SIDEAILQAGAAAALLASVVETARRYVTPASSAGA"
     gene            complement(1013..1753)
                     /locus_tag="VIU37_11290"
     CDS             complement(1013..1753)
                     /locus_tag="VIU37_11290"
                     /inference="COORDINATES: protein motif:HMM:NF012340.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C1 family peptidase"
                     /protein_id="HEY6014589.1"
                     /translation="MPALEGDTPNQFQGRILNAEPSPFDERDLLFAPDTAAPPPVRFV
                     ATGMGPVYNQGNTGTCGAHGGAGIRAWQQKRDHRGVPNIDIFRLYDLVKNVVDKQPDP
                     RRVIGTTIRSVFRLLKGTGTPLKGVSAPGAGGKVETYWRITDADELLMKRALMKHGPL
                     LVRCDWDAGWMRLPFSKILAAPLGRIVGGHIFVIFGWDDRVNGGSWLMRNSWGRWSFL
                     GNGNAYMAFRYFRFKRPEAWASTDIPGN"
     gene            complement(1799..>1996)
                     /locus_tag="VIU37_11295"
     CDS             complement(1799..>1996)
                     /locus_tag="VIU37_11295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014590.1"
                     /translation="GDGQMLLIVNVGANNITLQDQGTLAGSNLRLTAAGVTLGPRDSV
                     KLMYSSTVGDWIQVGNLVSVL"
BASE COUNT          286 a          677 c          722 g          311 t
ORIGIN      
        1 gtcgacccga cgtgggccgt gaccgttcgg cgcatcttcg agctggccgg cgagggccgg
       61 agcgtccggg cgatcgccgc ggccgtcagc gacgagcgac ggagctggag cccgcggacg
      121 gtccacgaca tcctgcggaa cccggtctat gcggggagga tggttcgcta ccgccgcggc
      181 gccaaggacc gctactaccg gccggacggc gtcgagggcc gggccgagct cggccaggtg
      241 ccggcgatca tcgaggaggc gctgtgggcc ggcgcgcagg ccggccggcg agctgcctag
      301 cggatcgcga cctcgatgtg gatggcgccg gccagcgcag cgatcgtgac cgcgcacgcg
      361 ccggcgatgg cggcgatcgg tcgaatgttc cggctcaggt gctcgagcac gaacctgaac
      421 acgccgagcg ccccgtcctt gcgcgcctgg gcgatctcgg tcgacttgat gaaggagtcg
      481 aaccgctggt gggccgcctc gctctcgagc cgctgtgcgg tgtgatccgc cccgtgcttg
      541 acgatgaact ccgtcaccac tccacggacc tcccgaatgt cctcgcgaac gtcgtcgcgc
      601 aggtggccga tgtcctcgcg aacgtcgtcg cgcagggcct cgacggcgtc gaggtatagc
      661 gtgttgtcgc gtcgagcggc gagctcgccg gcgtcccggt cccggctcgc gcgtcgtgcg
      721 tcggcttcgt cgtcccgccg cacgtgctcg ccgacgccat cggtcatgcg cccgcggagc
      781 tcgccggcgt cacgtagcgc cgcgccgttt cgacaaccga ggccaggagc gccgcggcgg
      841 cgccggcctg gaggatcgcc tcgtcgatcg acacgtcggg gatcttcccg gacgccttgg
      901 cgaccaggta gatgatgacg ccggcgccgt agccgatcgc gcggagcggc tcgcccttga
      961 gcgtgccgcg gactgcgtcg aggaacgctg cgaacctgtc catgagtcct ccctagttgc
     1021 ccgggatgtc ggtggacgcc cacgcctcgg ggcgcttgaa ccggaagtag cggaacgcca
     1081 tgtaggcgtt gccgttgccg aggaacgacc aacggcccca cgagtttcgc atcagccagg
     1141 agccgccgtt cacccggtcg tcccagccga agatgacgaa gatgtgcccg ccgacgatcc
     1201 gcccgagcgg ggcggcgagg atcttgctga acggcaggcg catccacccg gcgtcccaat
     1261 cgcagcggac gaggagcggg ccatgcttca tcagcgcccg cttcatcagg agctcgtcgg
     1321 cgtcggtgat ccgccagtac gtctcgacct tgccgccggc gcccggcgcg gagacgccct
     1381 tgagcggggt cccggtgccc ttgagcagcc ggaacacgga ccggatggtg gtcccgatga
     1441 cgcgacgcgg atcgggctgc ttgtcgacga cgttcttgac gagatcgtag agccggaaaa
     1501 tgtcgatgtt cgggacgccg cggtggtcgc gcttctgttg ccaggcgcgg atgccggcgc
     1561 cgccgtgggc gccgcacgtc cccgtgttgc cctggttgta gaccgggccc atgccggtcg
     1621 cgacgaaccg caccggtggc ggcgcggccg tgtccggtgc gaacaggaga tcgcgctcgt
     1681 cgaagggcga cggctcggcg ttgaggatcc ggccttggaa ctggttgggc gtgtcgccct
     1741 cgagtgctgg catgtcagca gtatccgctc gccgatcggc gagcgcaagg cgagaacatc
     1801 acaacacgct cacaagattg ccgacctgga tccagtcgcc gaccgtgctc gagtacatca
     1861 gcttgaccga gtcgcgtggt ccgagcgtga cgccggcggc cgtcaggcgc aggttgctcc
     1921 cggcgagcgt gccctggtcc tggagcgtga tgttgttggc cccgacgttg acgatgagca
     1981 gcatctggcc gtcccc
//
LOCUS       DATDDI010000775         3536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_558014, whole genome shotgun sequence.
ACCESSION   DATDDI010000775 DATDDI010000000
VERSION     DATDDI010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3536
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558014"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..727
                     /locus_tag="VIU37_11300"
     CDS             <1..727
                     /locus_tag="VIU37_11300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014591.1"
                     /translation="GMTEREAVRLLDWNGMPLSCHLMLTAGPRATLGLLSPGDRPIER
                     GDRFTVAFGIWGALNCRAGFVVEDATELPEPIRDYVDRLVGPYFEAVAEWYGALRVGQ
                     TGGTLHEIVDRRLGDPFFGIFLNPGHQLHLDEWVNSPIWAGSTVELRSGMVFQADIIP
                     ATGTDYFTTNIEDGLALADRPLRDAFAAAYPAAWERIQARRRFMRDALGIELHADVLP
                     FSNLPAFLPPFLLRPDHAMTLAG"
     gene            832..1209
                     /locus_tag="VIU37_11305"
     CDS             832..1209
                     /locus_tag="VIU37_11305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014592.1"
                     /translation="MARPRSSTAASSSHAFKQLSVGELVALDTIKPEPKARPETPRQR
                     AIRERTDDIRAACNIAAAAPASLAVPIKLKPGQKLATLRLAVGKLMEAEKRDLHWGVR
                     GETIYISKGLIPGGRGGRRRRTA"
     gene            complement(1260..2768)
                     /locus_tag="VIU37_11310"
     CDS             complement(1260..2768)
                     /locus_tag="VIU37_11310"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014593.1"
                     /translation="MTDTDVPRTAPTPTVPPTTARVAARTGRLPWLLIVVLTGQFMAI
                     LDVTIVNVATPTIRVDLHASGGALQLIVAAYTIAYAVLLITGARLGSLVGYRRVFLAG
                     LAVFTVASLACGVAPSSEVVIVFRTIQGAGAAMMVPQVFSLLQRNYEGPARARAFSIY
                     AAVIALAALVGQVMGGLIVSANLLGTGWRPVFLVNVPIGLALILAALRTLPVDRREAA
                     RALDIPGLVTLAAAVLLLVVPLVLGHEAGWPLWTGISLLASVLAFAAFVAIERSVGRR
                     GGSPLISGHVLRAPGILPATVVLFLGMAGYGGFLFSFAQHLQAGLGKSPLDAGLTFAP
                     AAIGFAAGGLTWRRLRTEWHRPIVPAGFAAALVGYLGIALALRDGGPGGLELPLVLAL
                     TGLGMGYAFSPALAVALATVAPADASDASGLLTTVIQLGQVVGIATFGSTFLTLAIEP
                     GPHPMAAAISTTLALVAAVMALCTVVALPLARRRAEAVDRLPTASRQVAATD"
     gene            2871..>3536
                     /locus_tag="VIU37_11315"
     CDS             2871..>3536
                     /locus_tag="VIU37_11315"
                     /inference="COORDINATES: protein motif:HMM:NF037627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6014594.1"
                     /translation="MTSFVPPPDHEVAPPREPARRAELAAFLRSRRARINPEEVGLIP
                     GRRRHTPGLRREEVAQLASVGLTWYTWLEQGRPINVSVDVLDGIARALRFDATEREHL
                     YRLADVGVDPVDPGCAQLEPEIQIILDGLQPLPASVINARYDMLAWNAAYAALFPGVV
                     TAQGRERNVLWQVFTMDTCPVLDQDIELPRLVATLRGAFGRHVGEPAWTEFVRSLSKA
                     SPRF"
BASE COUNT          547 a         1272 c         1269 g          448 t
ORIGIN      
        1 gggcatgacc gagcgcgagg cggtccggct gctcgactgg aacgggatgc cgctgtcgtg
       61 ccacctgatg ctgaccgccg ggccgcgggc gacgctcggg ctgctcagcc cgggcgaccg
      121 gccgatcgag cgcggcgacc gcttcaccgt ggcgttcggg atctgggggg cgctcaactg
      181 ccgggcgggc ttcgtcgtcg aggacgcaac ggagctgccc gaaccgatcc gcgactacgt
      241 cgaccggctc gtcggaccgt acttcgaggc cgttgccgag tggtacggcg cgctccgggt
      301 ggggcagacc ggtggcacgc tccacgagat cgtcgaccgc cggctgggcg accccttctt
      361 cgggatcttc ctcaacccgg gtcaccagct ccatctcgac gaatgggtca actcgccgat
      421 ctgggcgggt tccacggtcg agctgcgctc cgggatggtg ttccaggccg acatcatccc
      481 ggcgaccggg acggactact tcacgaccaa tatcgaggac ggcctcgcgt tggccgaccg
      541 gccgctccgc gacgccttcg cggcggccta ccccgccgcg tgggagcgga tccaggcgcg
      601 ccgccggttc atgcgcgacg cgctcggcat cgagctccac gccgacgtcc tgccgttctc
      661 caacctgccg gcgttcctgc cgccgttcct cctccggccg gatcacgcga tgaccctggc
      721 cggctagcag cggcgcgaca aggtcccctc cgcctcacgt tgacccgggg gtccgcgagc
      781 gcctagagtc cctcccgtca acgtaccggg tggttctcag gaggcgccca cgtggccagg
      841 ccccgatcct ctaccgcagc gtcgtcgtcg cacgccttca agcagctcag cgtcggcgag
      901 ctggtggccc tcgacaccat caagcccgag cccaaggcac ggcccgagac gccacgccaa
      961 cgggccatcc gcgaacggac cgacgacatc cgcgccgcct gcaacatcgc ggcggccgcg
     1021 ccggccagtc tcgcggtccc gatcaagctc aagcccgggc agaagctggc gacgctccgg
     1081 ctcgccgtcg ggaagctgat ggaagccgag aagcgcgacc tccactgggg cgtccgaggc
     1141 gagacgatct acatcagcaa gggcctgatc ccgggtgggc gaggaggccg ccggcgcagg
     1201 accgcctgac cgccggcccg ggccggcgcc cggcctgcgc gccgcagggg tccccgcggt
     1261 cagtcggttg cggccacctg ccgggatgcc gtcggcaggc gatcgaccgc ctcggcccga
     1321 cgccgggcca gcggtagcgc caccaccgtg cacaacgcca tgaccgccgc caccagcgcg
     1381 agcgtggtcg agatcgcggc cgccatcggg tgcggccccg gctcgatcgc cagcgtcagg
     1441 aaggtactcc cgaacgtcgc gatgccgacg acctgcccga gctggatcac cgtggtcagg
     1501 aggccgctgg cgtccgaggc atcggccggc gccacggtcg ccagcgcgac ggccagcgcc
     1561 gggctgaacg cgtagcccat cccgaggccc gtcagcgcca ggacgagcgg caactcgaga
     1621 ccgcccgggc cgccgtcccg gagggccagc gcgatcccga ggtagccgac gagtgccgcg
     1681 gcgaagcccg ccgggacgat cgggcggtgc cattcggtcc ggagtcgccg ccaggtcagc
     1741 ccgccggcgg caaaaccgat ggccgcaggc gcaaaggtca ggcccgcgtc gagcggcgac
     1801 ttgccgaggc cggcctggag atgctgggcg aacgagaaca ggaacccgcc gtagccggcc
     1861 atgccgagga agagcacgac ggtggcgggc aggatgcccg gcgcgcgcag gacgtgaccg
     1921 ctgatcaggg gggatccccc acggcgtccg accgaccgct cgatggcgac gaaggccgcg
     1981 aacgccagga cgctggcgag cagcgagatg cccgtccaca acggccagcc cgcctcgtgg
     2041 ccgagcacga gcgggacgac cagcaggagg acggccgcgg cgagcgtcac cagcccgggg
     2101 atgtcgaggg cccgggcggc ctctcgccga tcgaccggca gggttcgcag cgcggcgagg
     2161 atcagcgcga ggccgatcgg gacgttgacc aggaagaccg ggcgccagcc cgtccccagc
     2221 aggttcgcgc tgacgatcag cccgcccatg acctggccga ccagcgcggc cagggcgatg
     2281 accgccgcgt agatgctgaa ggcgcgggcg cgggccggtc cctcatagtt gcgctggagc
     2341 aggctgaaga cctgcggcac catcatcgcg gcgccggcac cctggatcgt ccggaagacg
     2401 atcacgacct cgctggacgg ggcgaccccg caggcgagcg atgcgaccgt gaagaccgcc
     2461 aggccggcga ggaacacgcg ccggtacccg acgagggagc cgagccgggc gccggtgatc
     2521 aggagaaccg cgtaggcgat cgtgtacgcg gcgacgatga gctgcagcgc gccaccggac
     2581 gcgtgcaggt cgacccggat cgtgggcgtg gcgacgttga cgatcgtcac gtcgaggatc
     2641 gccatgaact ggcccgtcag gacgacgatc agcagccagg gcaggcgtcc ggtcctggcg
     2701 gcgactcgtg cggtcgtggg tgggacggtg ggcgtcggag ctgtccgagg gacgtcggtg
     2761 tcggtcatcc ccgtagcctg ggcactcggg tgcaccgctt ccagtagtct cgtaatcctg
     2821 gtagtacgag taccctggaa caggtattgg atcggcgaga tactggcccc atgacgtcct
     2881 tcgtcccacc acccgaccac gaggtcgcac ccccgcgcga gccggcgcgc cgggccgagc
     2941 tggccgcctt ccttcgaagc cgacgcgcgc ggatcaaccc ggaagaggtc ggcctgattc
     3001 ccgggcgacg ccggcacacg cccggtctcc ggcgtgagga ggtagcccag ctcgcctcgg
     3061 tggggttgac ctggtacacc tggctcgagc agggccggcc gatcaacgtg agcgtcgacg
     3121 tgctggacgg catcgcccgc gcactccggt tcgatgcgac ggagcgcgag cacctgtatc
     3181 gcctcgccga tgtcggcgtc gatccggtcg accccggttg cgcacagctc gagccggaga
     3241 tccagatcat cctcgacggc ctccagccgc tgcccgccag cgtgatcaat gcccgctacg
     3301 acatgctcgc ctggaacgcc gcctatgcgg cgctgttccc gggcgtggtg acggcgcagg
     3361 gacgggagcg gaacgtgctg tggcaggtct tcacgatgga cacctgcccg gtgctcgacc
     3421 aggacatcga gcttccgcgg ctggtcgcga ccctgcgcgg cgcattcgga cgccacgtcg
     3481 gcgagccggc atggaccgag ttcgtccggt ccctgtcgaa ggccagcccg cggttt
//
LOCUS       DATDDI010000776         4110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_349697, whole genome shotgun sequence.
ACCESSION   DATDDI010000776 DATDDI010000000
VERSION     DATDDI010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349697"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VIU37_11320"
     CDS             complement(<1..754)
                     /locus_tag="VIU37_11320"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit H"
                     /protein_id="HEY6014595.1"
                     /translation="MTVINRTWDRLTLPGKVVFTIVPVLLATLIALVAVISILGGTIV
                     DILAANLPIVRFVVAATVILLMTIPTAFLLIYMEMKVIALMNLRIGPDRVGPFGSLLS
                     VVHGLKVLMKEDFTPTGADPLVFTWAPVVTYLASVMTLLVIPFAPGLYGQDFNIGLLY
                     FFAIGGLSVVGLLMAGWASYNKYSLLGGLRSAAQVISYEIPLTLSVVGLMLLAGTMSL
                     NSIVEQQSGWFTDWFMFKQPLGALIFFIAATAE"
     gene            complement(751..1968)
                     /locus_tag="VIU37_11325"
     CDS             complement(751..1968)
                     /locus_tag="VIU37_11325"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-quinone oxidoreductase"
                     /protein_id="HEY6014596.1"
                     /translation="MTTTTNQQSDDPRVTLDRDLGIFEPVPPYPPRTEREAEFYTLGD
                     GQMFINMGPQHPSTHGVLRVVLKLDGEKVVDLDPVLGYLHRGVEKLCENADYHQAICY
                     TDPLEYVSSLFTEWSPVIAFEKLMDVKVPRRAEYIRVLSSELNRIASHALFLGWMALD
                     LGGLTPILWSFIERDEIVDMLAALTGQRMLFNYFRIGGVNGDLNHEFMSRLGDWMSRA
                     AEQIEAGNGLLNENEIFVRRMRGLGTIDQKTALRMVMTGPNLRATGVPFDVRRAHPYS
                     VFPELEFDIPTRQEGDCLARYLLRMDEIKQSLRIIDQCLHQMPDGPVMAKLPRLLRPR
                     PGRAYAAIEGPRGQLSTYAISDGTDQPFRMRIHDPSFIHLQSVGLMMPGHLIADTMAI
                     MASLDPIMGGVDK"
     gene            complement(1979..2527)
                     /locus_tag="VIU37_11330"
     CDS             complement(1979..2527)
                     /locus_tag="VIU37_11330"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEY6014597.1"
                     /translation="MDRRFKERLEARFGAQLTGPIRQRHDETEMRIGPGDVVQVMSAL
                     HDEPDLRFEFLSDLAGVDTGVVMQVVYHLWSETTPDWLRVVADGLSRDDPRVPSVTFL
                     WKGAEWMEREAYDMFGITFEGNRDLRRIYMPPDYQSFPLRKDFFLPDDAARSPGGGVR
                     PMERTHAPSNAPTTALVRRGSV"
     gene            complement(2530..3237)
                     /locus_tag="VIU37_11335"
     CDS             complement(2530..3237)
                     /locus_tag="VIU37_11335"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030964 - NADH dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEY6014598.1"
                     /translation="MAMTRDKADDARLPAVQSEERDVVSPIVVPNTLWRAADPEAYDG
                     GQESSITHLREFDASGAGRRDDGRWSGALEVIPTKADYVLDLIRMNSLWPLLSGLACC
                     AIEMMSTATSKNDMDRWGMFPFRASPRQADVLIVAGTLTTKMAGPLVRLWEQMPEPKW
                     CVAMGDCTCSGGRYKRSYSTVEGIDRVMPVDVYVPGCPPRPEGLIYGMMKLQQLVKER
                     RGHWPERAIGPTVPEDV"
     gene            complement(3228..3584)
                     /locus_tag="VIU37_11340"
     CDS             complement(3228..3584)
                     /locus_tag="VIU37_11340"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEY6014599.1"
                     /translation="MTGIWYILGFAFAGVSFVFLTIGAAWLISHRTRGDEHKGLPYES
                     GIDTYGDTHGRFGLSFYIYALLFVAFDIEVVFIYLWAYAFRDLLLGGLVSMLIFVAIL
                     LLGLAYAWRKGALTWR"
     gene            complement(3868..>4110)
                     /locus_tag="VIU37_11345"
     CDS             complement(3868..>4110)
                     /locus_tag="VIU37_11345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014600.1"
                     /translation="EFLMGLGIEDRLQAVQADPATTLEDYLALRSSLLRLLDPAAMGR
                     FRVVGFGRDWPDGPPLAGFAFRLVRERTKPDQTAPD"
BASE COUNT          672 a         1385 c         1430 g          623 t
ORIGIN      
        1 cctcggcggt cgcggcgatg aagaagatca gggcacccag cggctgcttg aacatgaacc
       61 agtcggtgaa ccagccgctc tgctgctcga cgatcgagtt gaggctcatc gtgccggcca
      121 ggagcatcag ccccaccacc gacagcgtca gcgggatctc gtagctgatg acctgcgccg
      181 ccgatcgcag cccgccgagc agcgagtact tgttgtagct cgcccagccg gccatcagca
      241 gcccgacgac cgacagcccg ccgatcgcga agaagtagag tagcccgatg ttgaagtcct
      301 ggccgtacag gcccggcgcg aacgggatca ccagcagcgt catcacgctg gccaggtagg
      361 tgaccaccgg tgcccaggtg aacacgagcg gatcggcgcc ggtcggggtg aagtcctcct
      421 tcatcagcac cttgagcccg tggacgaccg acaggagcga cccgaatggc ccgacccggt
      481 ccggcccgat ccgcaggttc atcagcgcga tgaccttcat ctccatgtag atcaggagga
      541 aggcggtcgg gatcgtcatc agcaggatga ccgtggcggc caccacgaac ctgacgatcg
      601 gcaggttcgc ggcgaggatg tcgacgatcg tcccgccgag gatcgagatc accgcgacca
      661 gcgcgatcag cgtggccagc agcaccggca cgatcgtgaa cacgaccttg cccggcaggg
      721 tcagccgatc ccacgtccgg ttgatgacgg tcacttgtcg accccgccca tgatcggatc
      781 cagactggcc atgatcgcca tggtgtcggc gatcagatgg cccggcatca tcagcccgac
      841 cgactgcagg tggatgaacg acgggtcgtg gatccgcatc cggaacggct ggtccgtgcc
      901 gtcgctgatc gcgtaggtcg acagctggcc gcgggggccc tcgatcgcgg cgtaggcgcg
      961 cccggggcga ggtcgcagca ggcgcggcag cttggccatc acgggaccgt cgggcatctg
     1021 gtggaggcac tggtcgatga tccgcaggct ctgcttgatc tcgtccatcc ggagcaggta
     1081 gcgggccagg cagtcgccct cctggcgcgt cgggatgtcg aactcgagct cggggaagac
     1141 gctgtacggg tgcgcccgcc gaacgtcgaa cgggacgccg gtcgcgcgca ggttcgggcc
     1201 ggtcatgacc atccggagcg cggtcttctg gtcgatcgtg cccaggccgc gcatccggcg
     1261 gacgaagatc tcgttctcgt tgagcagccc gttgccggcc tcgatctgct ccgcggcccg
     1321 gctcatccag tcgcccaggc ggctcatgaa ctcgtggttc aggtcgccgt tgactccgcc
     1381 gatccggaag tagttgaaca gcatccgctg gccggtcagc gccgccagca tgtcgacgat
     1441 ctcgtcacgc tcgatgaacg accacaggat cggggtcagg ccgcccaggt cgagcgccat
     1501 ccagcccagg aacagggcgt ggctggcgat ccggttgagc tcgctcgaga ggacccggat
     1561 gtactcggcc cgcctcggga ccttgacgtc catcagcttc tcgaaggcga tgaccgggga
     1621 ccattcggtg aacagcgagc tcacgtactc gagcgggtcc gtgtagcaga tcgcctggtg
     1681 gtagtcggcg ttctcgcaca gcttctcgac gccgcggtgg aggtagccga ggaccgggtc
     1741 gagatcgacc accttctcgc cgtcgagctt gaggacgacg cgcaggacgc cgtgggtcga
     1801 cgggtgctgc gggcccatgt tgatgaacat ctggccgtcg ccgagcgtgt agaactcggc
     1861 ttcgcgctcg gtccgcggcg ggtacggcgg caccggttcg aagatcccga ggtcgcggtc
     1921 cagggtgacc cgcgggtcgt cgctctgctg gtttgtcgtg gtcgtcatcg cgccggcctc
     1981 agaccgaccc gcggcgcacg agcgccgtcg tcggtgcgtt gctcggggcg tgcgtccgct
     2041 ccatcggccg caccccgccg cccggcgagc gcgcggcgtc gtcgggcagg aagaagtcct
     2101 tgcggagcgg gaagctctgg tagtcgggcg gcatgtagat ccggcggagg tcgcggttgc
     2161 cctcgaaggt gatcccgaac atgtcgtacg cctcgcgctc catccattcg gcgcccttcc
     2221 acaggaaggt gaccgagggc acgcgggggt cgtcacgtga cagtccgtcc gccacgaccc
     2281 gcagccagtc cggggtcgtc tcactccaca ggtggtaaac gacctgcatg accacgcccg
     2341 tatccacgcc ggcgaggtcg ctcaggaact cgaatcgcag gtctggctcg tcatggagcg
     2401 cgctcatgac ctggacgacg tcgcccggac cgatgcgcat ctccgtctcg tcgtggcgct
     2461 ggcggatcgg tcccgtcagc tgcgcgccga agcgcgcctc gaggcgctcc ttgaagcgtc
     2521 ggtccacgcc tagacgtcct cgggaacggt cggcccgatg gctcgctccg gccagtggcc
     2581 gcggcgctcc ttgaccagct gctggagctt catcatcccg tagatgaggc cctcggggcg
     2641 cggcgggcag cccgggacgt agacgtcgac cggcatgacc cggtcgatcc cctcgaccgt
     2701 cgagtagctt cgcttgtagc ggccgcccga gcaggtgcaa tcgcccatcg ccacgcacca
     2761 cttgggctcc ggcatctgct cccagaggcg cacgagcggc ccggccatct tcgtggtcag
     2821 cgtgccggcc acgatcagga cgtcggcctg acgggggctc gcccggaacg ggaacatgcc
     2881 ccagcggtcc atgtcgttct tcgaggtcgc ggtcgacatc atctcgatcg cgcagcaggc
     2941 caggcccgag agcagcggcc agaggctgtt catccggatc aggtcgagca cgtagtcggc
     3001 cttggtcggg atcacctcga gcgcgccgct ccagcgtccg tcgtcgcggc ggcccgcccc
     3061 gctggcgtcg aactcgcgca ggtgggtgat gctgctctcc tgcccgccgt cgtacgcctc
     3121 cgggtcggcc gcgcgccaga gcgtgttcgg gaccacgatc ggggagacga cgtcgcgctc
     3181 ctcggactgg accgccggca ggcgggcgtc gtcggccttg tcgcgggtca tcgccatgtc
     3241 agcgctccct tccgccaggc gtaggccagc cccaggagca ggatcgcgac gaagatcagc
     3301 atgctgacca ggccgcccag caacaggtcc cggaaggcgt acgcccacag gtagatgaac
     3361 acgacctcga tgtcgaaggc cacgaacagc agggcgtaga tgtagaagga gagcccgaac
     3421 cggccgtggg tgtcgccgta ggtgtcgatg cccgattcgt acgggaggcc cttgtgctca
     3481 tcgcctcgcg tgcggtgcga gatgagccac gcggcgccga tcgtcaggaa gacgaacgag
     3541 acgcccgcga aggcgaaccc caggatgtac cagatgccgg tcaacccaat cccttccgag
     3601 cggcatgcga caagagagcc actggcccga ggaccctgga gagcgcagct ccatcccggt
     3661 ccgggcggga ctgcacccgg gggcattcta gcagcggggc cgtgagagcc cgcagcgcga
     3721 cgcgccgtcg gcccggagcg tgggatcgtc agggagcggc gcgcgccgag cgcgcgtgca
     3781 ggtccgcgcg ccgctccccg tcaggtcgtt acccgaccga tgcgaagcct gggagcgcga
     3841 ccggggccgg gcaataggga agttgcccta gtccggagcg gtctggtccg gtttggtgcg
     3901 ctcgcgcacc aggcggaagg caaacccggc gaggggcggg ccatccggcc agtcgcgccc
     3961 gaagcccacc acccggaagc ggcccatcgc ggcgggatcc agcagccgga gcagcgagga
     4021 ccgaagggcg agatagtcct ccagggtcgt ggcgggatcg gcctggacgg cctggagtcg
     4081 gtcctcgatc ccgaggccca tcaggaactc
//
LOCUS       DATDDI010000777         1566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_16765, whole genome shotgun sequence.
ACCESSION   DATDDI010000777 DATDDI010000000
VERSION     DATDDI010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16765"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..868
                     /locus_tag="VIU37_11350"
     CDS             <1..868
                     /locus_tag="VIU37_11350"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: protein motif:HMM:NF003211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEY6014601.1"
                     /translation="NFKNVQGSSRKKIPFGIAQIGKSFRNEISPGNFVFRMREFEQME
                     MQYFVRPEAEAMTAFEYWLPRRRAWYERYGVTPSRLRLREHAPDELAHYAKKAIDVEY
                     RFPFGWKELEGIHNRGDFDLSRHAEASGESLEYFDQSTNEHVIPWIVETAAGADRAAF
                     TFLIDAYREEEVRGETRVSLALHPDLAPYKVAVLPLLKKRPEIVELCHRIKADLQRHT
                     MAVYDDTAAIGKLYRRQDEIGTPWCVTVDVDSLEDGAVTVRDRDTMAQERVPVEGVTR
                     LILDRLDAARAE"
     gene            872..>1566
                     /locus_tag="VIU37_11355"
     CDS             872..>1566
                     /locus_tag="VIU37_11355"
                     /inference="COORDINATES: protein motif:HMM:NF023431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3500 domain-containing protein"
                     /protein_id="HEY6014602.1"
                     /translation="MTDTSAVADRISAAAGRWLDTLDEAQRRRARFGFDEPERFVWDY
                     LPGARRGLPLGDMTAPQRVAAMELVAASLSERGATEVQAVIALEPILRDLERGTGKDL
                     TRRDPGRYGFAIFGEPSSVAPWSWRVGGHHVAIQVAIGGGRVIGSTPSFLGANPATVP
                     NGPMAGHRTLDGEERLARTLLATLTPGQRRLAIVDPEAPDDILSGTGRRAELRDVPAG
                     IPYEALDPGQRTAL"
BASE COUNT          236 a          557 c          563 g          210 t
ORIGIN      
        1 caacttcaag aacgtccagg gcagctcgcg caagaagatc ccgttcggga tcgcccagat
       61 cggcaagtcg ttccggaacg agatctcgcc cggcaacttc gtcttccgga tgcgcgagtt
      121 cgagcagatg gagatgcagt acttcgtccg gcccgaggcc gaggcgatga cggcgttcga
      181 gtactggctc ccgcgccggc gcgcctggta cgagcgctac ggcgtgacgc cgtcgcgcct
      241 gcgcctgcgc gagcacgccc cggacgagct ggcgcactac gccaagaagg cgatcgacgt
      301 ggagtatcgc ttcccgttcg ggtggaagga gctcgagggg atccacaacc gcggcgactt
      361 cgacctgtcg cgtcatgccg aggcgagcgg cgagagcctg gagtatttcg accagtcgac
      421 caacgagcac gtcatcccgt ggatcgtgga gaccgccgcc ggcgccgatc gcgcggcgtt
      481 cacgttcttg atcgacgcct accgagagga ggaggtccgc ggcgagaccc gcgtgtcgct
      541 cgccctgcat ccggacctcg cgccgtacaa ggtcgccgtc ctgccgctgc tcaagaagcg
      601 gcccgagatc gtcgagttgt gtcaccggat caaggccgat ctccagcgcc acacgatggc
      661 ggtctacgac gacactgccg cgatcggcaa gctctaccgc cgccaggacg agatcgggac
      721 gccgtggtgc gtcaccgtcg acgtcgactc gctcgaggac ggcgcggtca ccgttcgcga
      781 ccgcgacacc atggcccagg agcgcgtgcc ggtcgagggc gtgacccggc tgatcctcga
      841 ccgcctcgac gcggcgcgcg ccgagtagct cgtgaccgac acgagcgccg ttgccgatcg
      901 gatctcggcg gccgccgggc ggtggctcga cacgctcgac gaggcgcagc gccggcgggc
      961 ccggttcggc ttcgacgaac ccgaacggtt cgtctgggat tacctgccgg gcgcgcgccg
     1021 cgggctgccg ctcggcgaca tgaccgcgcc ccagcgcgtc gcggcgatgg agctcgtcgc
     1081 cgcctcactg agcgagcgcg gggcgacgga ggtccaggcc gtcatcgccc tcgagccgat
     1141 cctccgcgac ctcgagcgtg ggaccgggaa ggacctgacg cgccgggatc ccggccggta
     1201 cgggttcgcc atcttcggcg aaccctcgag cgtggcaccg tggagctggc gcgtcggcgg
     1261 ccaccacgtc gcgatccagg tcgcgatcgg cggcggccgg gtgatcggca gcacgccgtc
     1321 ctttctcggc gcgaacccgg cgaccgtgcc gaacgggccg atggcggggc accggacgct
     1381 ggacggcgag gagcggctcg cccggaccct gctggcgacg ctcacgcccg gccagcggcg
     1441 cctcgcgatc gtcgacccgg aggcgccgga cgacatcctg agcggcaccg gccgtcgcgc
     1501 cgagctgcgg gacgtgccgg ccgggatccc gtacgaggcg ctggacccgg gccagcggac
     1561 cgcgct
//
LOCUS       DATDDI010000778         2726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_37477, whole genome shotgun sequence.
ACCESSION   DATDDI010000778 DATDDI010000000
VERSION     DATDDI010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37477"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1138
                     /gene="ligA"
                     /locus_tag="VIU37_11360"
     CDS             <1..1138
                     /gene="ligA"
                     /locus_tag="VIU37_11360"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEY6014603.1"
                     /translation="TVVEDIVPYVGRTGTLTPVAHLRPTKVAGSTVARATLHNLDEVR
                     RKDIRIGDHVILQKAGDVIPEVVRPIVEKRTGDERVYEMPLTCPVCDTPIARDEGAVR
                     HYCPNPACPARVGQEFGHFAGRGGMDIEGAGWAVLSQLIERGMLKRRGDFYRLSVEHL
                     ESLDRFAHKSAENLHAAIQKSRRRPLERIIAALGIPQVGWTTAIELAAWLATELPHAD
                     GEPMTGRGSWFSRAAQFLADTAREHPERFEEVTGIGPTVAGSLAEYFGGPGLDVLDDL
                     VDAGVEPELPAPRPPGAGQGPLAGKTIVVTGTLEGFTRPEAEAAIRAAGGKPGGSVSK
                     KTDYLVAGESAGSKLAKAQELGVPVLDEDGFRDLLSGGEPRSAP"
     gene            complement(1107..1616)
                     /locus_tag="VIU37_11365"
     CDS             complement(1107..1616)
                     /locus_tag="VIU37_11365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014604.1"
                     /translation="MIETACLQCGTPAGSSRASFCRRCGLPYGEPPRGDVELPACPIC
                     YQSVDDDGRLPSLEHFGLRVDLVRHRAEHDVHPVGDDDWLESLREGDRIRIGRWSAPF
                     EVVRRYLVTGQVEAGRGRALAHDAIVNAMTQIRRWGTSGQIFGDQPEWVEARAAVAQL
                     MERYAARRH"
     gene            complement(1750..2595)
                     /locus_tag="VIU37_11370"
     CDS             complement(1750..2595)
                     /locus_tag="VIU37_11370"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF037026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014605.1"
                     /translation="MHLPRIRRMTFADVDRTSDAMLREGWGDRRVKLRFVAGHPNCMP
                     LIAEADGAIVGTGVGTYNGSVGWIGTIWVDPDWRRRGLGRALTIATMEAGEAAGCRAF
                     VLVATTVGQPLYEGLGFEVQTWYRIKEARGLAPDARAHAAPLVRPFRPTDLPGMAELD
                     LAATGEDRRHLLDAFAAPDTARCLERADGRLGGFVIRAPWGGGATIAPDPDDAMAILT
                     ARRLAAGPEKRVRAGLLADNEAGLERLAADGWVDVWQAPRMIRGSMPDWNPGAIWGQF
                     DHAIG"
BASE COUNT          383 a         1002 c          971 g          370 t
ORIGIN      
        1 gacggtcgtc gaggacatcg ttccgtacgt cggccggacc ggcacgctta ccccggtcgc
       61 ccacctgcgg ccgaccaagg tcgccggctc gacggtcgcg cgggccacgc tccacaacct
      121 cgacgaggtg cggcgcaagg acatccggat cggcgatcac gtgatcctgc aaaaggccgg
      181 cgacgtcatc cccgaagtcg tccgtccgat cgtcgagaaa cgaaccggcg acgagcgggt
      241 ctacgagatg ccgctcacgt gcccggtctg cgacactccg atagcccgtg acgagggggc
      301 cgtccgccac tactgcccga acccggcgtg tccggcacgg gtgggccagg agttcggcca
      361 cttcgcgggg cgcggcggga tggacatcga gggtgccggc tgggcggtcc tgtcgcaact
      421 gatcgaacgc gggatgctca agcgtcgcgg cgacttctac cggttatcgg tcgagcacct
      481 cgagagcctg gaccggttcg cgcacaagag cgccgagaac ctccatgccg cgatccagaa
      541 atcccgccgc cggccgctcg agcggatcat cgcggcgctc gggatcccgc aggtcggctg
      601 gacgaccgcg atcgagctgg ccgcctggct ggccaccgag ctgccgcatg ccgacggcga
      661 gccgatgacc ggccgtggaa gctggttctc ccgcgccgcg cagttcctgg cggacaccgc
      721 ccgcgagcat cccgaacggt tcgaggaggt gaccggcatc ggcccgaccg tcgccgggag
      781 cctggccgag tacttcggtg ggccgggcct cgacgtcctc gacgacctgg tcgatgccgg
      841 ggtcgagccc gagctgccgg cgccgcggcc gccgggcgcc ggccagggtc cgctggccgg
      901 caagacgatc gtggtcacgg gcacgctgga aggcttcacg cgtccggagg cggaggcggc
      961 gatccgggcg gccggcggca agcccggggg ctcggtctcg aagaagacgg actacctggt
     1021 ggcgggcgaa tccgccgggt cgaagctggc caaggcgcag gagctgggcg tcccggtgct
     1081 cgacgaggac gggttccgcg acctgctcag tggcggcgag ccgcgtagcg ctccatgagc
     1141 tgggccaccg cggcgcgcgc ctcgacccac tcgggctgat ccccgaagat ctggccgctc
     1201 gttccccagc gccggatctg ggtcatcgcg ttgacgatcg cgtcgtgcgc cagcgctcga
     1261 ccgcgccccg cctcgacctg cccggtgacg aggtagcgcc ggacgacctc gaacggtgcc
     1321 gaccagcgcc cgatccggat acggtccccc tcgcgcagcg attcgagcca gtcgtcgtcc
     1381 ccgaccgggt ggacgtcatg ctcggcgcgg tgccggacga gatcgacccg caggccgaag
     1441 tgctcgaggc tcggcagccg gccgtcgtca tccacgctct ggtagcagat cggacaggcc
     1501 ggcagctcga cgtcgccgcg gggcggctcg ccgtacggta gtccgcaacg ccggcagaag
     1561 ctcgcgcggc tgctaccggc gggcgtgccg cactgcaggc aggctgtctc gatcatcact
     1621 cggcggctcc acggcgttcc tggggactgg tctccgttca ggatgcccga gccacgcctg
     1681 gccaaccatg gcccatcggg tcggtcgcgc catcggcgga ccgggacttt cgttccgcgt
     1741 ggccccgctt caaccgatcg cgtgatcgaa ctggccccag atcgcgccgg ggttccagtc
     1801 cggcatggat ccgcggatca tccggggcgc ctgccatacg tccacccaac cgtcggcggc
     1861 cagccgttcg aggccggcct cgttgtcggc caggagaccg gcgcggacgc gcttctccgg
     1921 ccccgccgca agccggcgcg cagtcaggat ggccatcgcg tcgtccgggt cgggcgcgat
     1981 cgtcgccccg ccgccccacg gtgcgcggat gacgaaccca ccgagacggc cgtcggcccg
     2041 ctccaggcac cgtgccgtgt ccggagccgc gaaggcgtcg agcaggtggc gtcggtcctc
     2101 gccggtcgcg gccagatcga gctcggccat gccgggcagg tcggtcgggc ggaacggccg
     2161 caccagcggc gccgcgtggg ctcgcgcgtc gggcgcgagc ccccgcgcct ccttgatccg
     2221 gtaccaggtc tggacctcga acccgagacc ctcgtacagc ggctgcccga ccgtggtcgc
     2281 caccaggacg aacgcgcggc agccggcggc ctcgccggcc tccatggtcg cgatcgtcag
     2341 tgcccggccg agaccgcggc gacgccagtc gggatcgacc cagatcgtgc cgatccagcc
     2401 gaccgacccg ttgtacgtgc cgaccccggt acccacgatc gcgccgtccg cttcggcgat
     2461 cagcggcatg cagttcgggt gcccggcgac gaagcgaagc ttgacccgcc gatcgcccca
     2521 gccctcgcgg agcatggcgt ccgacgtgcg gtcgacgtcg gcgaaggtca tccggcggat
     2581 ccgcggcaga tgcatgacgt gatcgtatcg gtcgcgcgcg atcgcggtcg gcccgtccgc
     2641 tatcatcggc cgatggccac cctctcccgt tccgacgtcg agcacgtcgc gcacctggcg
     2701 cggctcgggc tcagcgacgc ggagct
//
LOCUS       DATDDI010000779         2370 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_536761, whole genome shotgun sequence.
ACCESSION   DATDDI010000779 DATDDI010000000
VERSION     DATDDI010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536761"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /gene="smpB"
                     /locus_tag="VIU37_11375"
     CDS             complement(<1..450)
                     /gene="smpB"
                     /locus_tag="VIU37_11375"
                     /inference="COORDINATES: protein motif:HMM:NF003843.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEY6014606.1"
                     /translation="MADETTVALNRRARHDFTIDETFEAGIVLTGTEIKSIRAGKANL
                     TAAYARVEHGEAWLVAAHIAPFEGGNRYNHEPKRTRKLLLHRSEIDELLGRTKAKGQT
                     IVPLRLYINEKGRAKIELALARGKQLHDRRRDIADRDAKRDVARELAD"
     gene            complement(679..2025)
                     /locus_tag="VIU37_11380"
     CDS             complement(679..2025)
                     /locus_tag="VIU37_11380"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY6014607.1"
                     /translation="MVPAEPEPEPATILDVPNSVAPAAEASPPDRRRIRLLPIAIGVV
                     TVLAGSALFLSGYTMGRQAAAEPGTPVSAAEAFQPFWDAYHTITDRYAGEPVDRNTLI
                     QGAIRGMIAALGDPYSSYLTSDEYRQSLQGISGQFEGIGAEIATQAGDGTQGCTPLGP
                     DCHLLVTAALADSPAERAGLKSGDLVLETDGSSLDGLTVDGARDRIRGPKGTVVTLTI
                     RRGTAEPFTVSITRDVVQEREVTTKVLAGGTVGYVRLAGFSDAAAIQLTDALTAQVKA
                     GRTRLILDLRGNPGGYVTAARTVASQFIGSGVIFWEQDAQGNQVATEAVPGGVATDPR
                     LKIVCLIDGGTASASEIVAGALQDTGRATLVGQQSFGKGTVQQWQELTGEGGAFKLTI
                     ARWLTPDKRWIHKVGLTPNVVVTLPDPIPAGSDPILDKGLEVLGASAQGDRLRDAA"
     gene            complement(2149..>2370)
                     /locus_tag="VIU37_11385"
     CDS             complement(2149..>2370)
                     /locus_tag="VIU37_11385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014608.1"
                     /translation="FEGAMVGLFGSLLTLGILAAAADPISGFMADFFRVLPLQFGSLT
                     RDLVALVLGAGVGLGVLGSWLSVRTYLIR"
BASE COUNT          335 a          817 c          853 g          365 t
ORIGIN      
        1 gtcggccagc tcccgcgcca cgtcgcgctt cgcgtcgcgg tcggcgatgt cccgccgccg
       61 gtcgtggagc tgcttgccgc gcgccagggc gagctcgatc ttggcccggc ccttctcgtt
      121 gatgtagagc cgcaacggca cgatggtctg gcccttggcc ttcgtgcgcc ccaggagctc
      181 gtcgatctcg gagcggtgga ggagcagctt gcgcgtccgt ttgggctcgt ggttatagcg
      241 gttcccgccc tcgaacggcg cgatgtgggc agccaccagc cacgcctcgc cgtgctcgac
      301 gcgagcgtag gcggccgtca ggttggcctt gcccgcacgg atcgatttga tctcggtgcc
      361 ggtcaggacg atgccggcct cgaacgtctc gtcgatcgtg aagtcgtgac gggctcttcg
      421 gttgagggcg acggtcgtct cgtcggccat ggcggggctc ctcgaactca gcagcagtat
      481 ggcgccggaa cgcacgaacg ccggcccgat gcgggccggc gtccgagtgc tttaccaccc
      541 acaggggtgt ccgactaaac ggccatctcc tgcgaggtgg tgcagctacg cgtactgtcg
      601 atcactgcac atcacctcct ttcgttccct cgaaccgtac ccgatgcgtc aggggagcgc
      661 aagagcgccg atccggcgtc aggccgcgtc gcggaggcgg tcgccctggg ccgatgcgcc
      721 gagcacctcg aggcccttgt cgaggatcgg gtcggagccc gccgggatcg gatcggggag
      781 cgtgaccacc acgttcgggg tcagccccac cttgtggatc cagcgcttgt ccggggtcag
      841 ccagcgcgcg atcgtcagct tgaacgcgcc gccttcgccg gtcagctcct gccactgctg
      901 gaccgtcccc ttgccgaacg actgctggcc gaccagcgtc gcccgcccgg tgtcctggag
      961 ggcccccgcc acgatctcgc tggcggaggc ggtgcccccg tcgatcaggc agacgatctt
     1021 gagcctcggg tcggtggcga cgccgccggg caccgcctcc gtggcgacct ggttgccctg
     1081 ggcgtcctgc tcccagaaga tcacgccgga gccgatgaac tggctcgcga cggtccgggc
     1141 ggccgtcacg tacccgcccg ggttcccgcg aaggtcgagg atgagcctgg tccgcccggc
     1201 cttgacctgc gcggtcagcg cgtccgtcag ctggatggcc gcagcgtccg agaagccggc
     1261 cagccggacg tagccgaccg tcccgccggc aagcaccttg gtcgtgacct cacgttcctg
     1321 gacgacgtca cgggtgatcg acaccgtgaa tggctcggcc gtgcctcgcc ggatcgtgag
     1381 cgtcacgacc gtccccttcg gcccgcggat ccggtcgcgc gctccgtcga cggtcagccc
     1441 gtcgagcgag ctgccatcgg tctcgagcac gagatcgccg gacttcaggc ccgcccgctc
     1501 ggcgggcgaa tccgccagcg ccgcggtgac gagcaggtgg caatcgggac cgagcggcgt
     1561 gcagccctgc gtcccgtcgc cggcctgcgt ggcgatctcg gcgccgatcc cctcgaactg
     1621 gccgctgatc ccctggaggc tctggcggta ctcgtccgag gtgaggtacg aggagtacgg
     1681 atcgcccagc gcggcgatca tgccgcggat ggcgccctgg atcagggtgt tccgatcgac
     1741 cggttcaccc gcgtagcggt cggtgatcgt gtggtaggcg tcccagaacg gctggaaggc
     1801 ctcggccgcc gagaccggcg ttccgggctc ggccgcggcc tggcggccca tggtgtagcc
     1861 cgacaggaag agggccgagc cggccagcac cgtgacgacg ccgatcgcga tcgggaggag
     1921 gcggattcgt cgccggtccg gcggacttgc ctcggccgcg ggagcgaccg aattggggac
     1981 gtcgaggatc gtggcgggtt cgggttcggg ttcggccggg accatggctt gctgcgacct
     2041 tggcgctgac agggacaggg atggacggcg tcgcggggtg acggcgggcg atcagggtac
     2101 accggcccgc cggcaatgac aggtacgacg atcggggtct cggcggcctc agcggatcaa
     2161 gtacgttcgt accgacagcc acgagccgag cacgccgaga cccacgccgg cgcccagcac
     2221 gagcgccacg agatcgcggg tgagcgagcc gaactggagc ggcaggaccc ggaagaagtc
     2281 cgccatgaag ccgctgatcg gatcggccgc ggcggccagg atccccagcg tgaggagcga
     2341 tccgaacagc ccgaccatgg cgccctcgaa
//
LOCUS       DATDDI010000780         1592 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_391369, whole genome shotgun sequence.
ACCESSION   DATDDI010000780 DATDDI010000000
VERSION     DATDDI010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391369"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIU37_11390"
     CDS             <1..240
                     /locus_tag="VIU37_11390"
                     /inference="COORDINATES: protein motif:HMM:NF024770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6014609.1"
                     /translation="SVVGFDDIDLAPHVDPPLTTVHQPIRRKGEEAVRLLLSVVQRRD
                     LVSPEHRRLETRLIVRGSTGPAPLEAHREVAGANG"
     gene            367..>1592
                     /locus_tag="VIU37_11395"
     CDS             367..>1592
                     /locus_tag="VIU37_11395"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEY6014610.1"
                     /translation="MNRNHRLAGLLAGVVLVAAACSSGAATTAPSAEAPSAAAPSAEA
                     PSTAPESQAPAGLSGSLTIWHSYGSGAGTEATALKTVTDKILAANPDLKLTIQDIKFD
                     DLFKKFELEAASGGGPDLFIAPNDSLGKEARAGLFLDVTSMLEGKLANDSQVSIDGSK
                     VDGKLYMVPESLKAVAMYYDKSKIATPPATTDELLAGVKDGSIKAGFDAHSSYHSFGW
                     WAAFGGQLMDDSGKCVADTTGVADAYKYFQDLQAAGAKWYDKYDDLASDFKSGKIDLI
                     VDGPWASGGYKDALKDNLAVAPMPSGPKGPSKPLTGVDGWYINTNAADPQLAVNFALE
                     MVKAENEQVFVDTAGHIPADTTIQISDPITQKFAEAVATGFPRPQVPQLDNFWGNFDN
                     ALNLVIQKGEDPQKAAT"
BASE COUNT          294 a          578 c          505 g          215 t
ORIGIN      
        1 agcgtcgtcg gcttcgacga catcgacctc gccccgcacg tggacccccc gctcacgacg
       61 gtgcaccagc cgatccgtcg caagggcgaa gaggcggtcc gcctgctgct gtccgtcgtc
      121 caacgacggg atctggtcag ccccgagcat cgccggctcg agacgcgcct catcgtgcgc
      181 ggctccaccg gcccggcgcc actcgaggcg cacagggagg tggccggggc caacggctga
      241 gatcgcccct tcgagggcca tcgacgttcg ggccccccgg cccaggcgcc ggccacgccg
      301 gcatcgtcca gggagtcatg gtgatcgaac cgatcgatca ctcgagagag gagtagcaag
      361 caaccgatga accgaaacca tcgcctcgcg ggccttctgg caggagtggt cctcgtggcc
      421 gccgcctgct cgtcgggcgc cgccacgacc gcgccgagcg cggaagcccc gtcggccgcg
      481 gcgcccagcg ccgaggcccc gtcgaccgcc ccggagtcgc aggcgcctgc cggcctgtcc
      541 ggctcgctga ccatctggca ttcctacggg tcgggcgccg gcaccgaggc gaccgcgctc
      601 aagacggtca ccgacaagat cctcgccgcc aacccggatc tcaagctgac gatccaggac
      661 atcaagttcg acgacctgtt caagaagttc gagctcgaag ccgccagcgg cggtgggccg
      721 gacctgttca tcgccccgaa cgacagcctc ggcaaggaag cgcgcgcagg gctgttcctc
      781 gacgtgacct cgatgctcga aggcaagctc gccaacgact cgcaggtctc gatcgatggc
      841 agcaaggtcg acggcaagct gtacatggtt cccgagtcgc tcaaggccgt ggccatgtac
      901 tacgacaagt cgaagatcgc gacaccgccg gccacgacgg atgagctcct cgccggcgtc
      961 aaggacggct cgatcaaggc gggcttcgat gcccacagct cgtatcactc gttcggctgg
     1021 tgggccgcct tcggcggtca gctgatggac gacagcggca agtgcgttgc cgacaccacc
     1081 ggtgtcgccg acgcctacaa gtacttccag gacctccagg ccgcgggcgc gaagtggtac
     1141 gacaagtacg acgacctcgc cagcgacttc aagtccggca agatcgacct catcgtcgac
     1201 ggcccgtggg cctccggcgg gtacaaggac gcactcaagg acaacctcgc ggtcgccccg
     1261 atgccgtccg gtcccaaggg cccgtccaag ccgctgaccg gcgtcgacgg ctggtacatc
     1321 aacaccaacg cggccgaccc gcagctcgcg gtcaacttcg cgctggagat ggtcaaggcc
     1381 gagaacgagc aggtgttcgt tgacaccgcc ggccacatcc cggccgacac gaccatccag
     1441 atcagcgatc cgatcacgca gaagttcgcc gaagcggtcg cgacgggctt cccccgcccg
     1501 caggtcccgc agctggacaa cttctggggc aacttcgaca acgccctgaa cctcgtcatc
     1561 cagaagggcg aggacccgca gaaggcggcc ac
//
LOCUS       DATDDI010000781         2469 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_307789, whole genome shotgun sequence.
ACCESSION   DATDDI010000781 DATDDI010000000
VERSION     DATDDI010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2469)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2469)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307789"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..454
                     /locus_tag="VIU37_11400"
     CDS             113..454
                     /locus_tag="VIU37_11400"
                     /inference="COORDINATES: protein motif:HMM:NF037625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014611.1"
                     /translation="MARPRIRQRAIAALLSRPGSPAAGQSLRASLIMRVPELRMRMLD
                     SFVDTIELFSGLVAERAGRPADDFEARSLVGALMGVVIGVWLASGGDVGPAFIGRVDD
                     ALDFLEGGFRI"
     gene            744..1016
                     /locus_tag="VIU37_11405"
     CDS             744..1016
                     /locus_tag="VIU37_11405"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6014612.1"
                     /translation="MAVAVRPAPEEIQAAKPFAPLDIAIDRCKGCRLCIDVCPRHVLA
                     LDESFVNGLGYHPVRLTDPGSCTSCALCARICPDAVYTVYARPKAV"
     gene            1018..2184
                     /locus_tag="VIU37_11410"
     CDS             1018..2184
                     /locus_tag="VIU37_11410"
                     /inference="COORDINATES: protein motif:HMM:NF005507.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate dehydrogenase subunit
                     VorB"
                     /protein_id="HEY6014613.1"
                     /translation="MTTMTRRVLMKGNEAMAEAAVQAGCDAYFGYPITPQAELLEWMA
                     RRMPELGRVFIQAESELGAINMALGAAATGARVLVSSSSPGISLMAEGMSYMAGSELP
                     VVLINVMRGGPGLGSIGASQSDYFQATKGHGHGDYRVPVLAPSSIAEAVEIVADAFEI
                     AERYRTPVFILTDGVMGQAMEPVVPEYRTPPRPQSDWSLSGADGRKPRVVHSLDLKPE
                     DLEVHNLALQAKFAEIAEHEVRWAGEYLEDAEIVVVAYGTAARVARTAVERAREHGLP
                     AGIFRPITLWPFPSAELRAIAPRLRAVVVLEMSAGQMVEDVRLSVDGRAPVFFHGRTG
                     GMVPTPGEVVDELRRAWATTTPVDDPARVDAAAAEPDPLSLIEQGAWAAAGIGR"
     gene            2189..>2469
                     /locus_tag="VIU37_11415"
     CDS             2189..>2469
                     /locus_tag="VIU37_11415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014614.1"
                     /translation="MSTLTSESKRIVYRRPDALADRSTHYCPGCGHGIVHRLVAELLD
                     ELGVTKRTIGVASVGCSVFAYDYFTVDFVESPHGRAPAVATGVRRMRPDA"
BASE COUNT          332 a          879 c          891 g          367 t
ORIGIN      
        1 gtcgagcccg gcgacccgaa gacgaaggac ggcgccgagt acgtgtatct ggaacgtgcc
       61 ggcgaggtga cccagccgcg caccggcaag gtgatgccgg cgaaggcgat gggtggcccg
      121 gccgcggatc cggcaacgcg cgatcgccgc gctgctctcg cgacctggct caccagcggc
      181 cggccagtcg cttcgggcct ccctgatcat gcgtgttccc gagctccgga tgcgcatgct
      241 cgattcgttc gtcgacacga tcgagctgtt ctcgggcctc gtcgcggaac gcgcggggcg
      301 cccggccgac gacttcgagg cgcggagcct ggtcggcgcc ctcatgggtg tcgtgatcgg
      361 cgtatggctg gcgtccggcg gcgatgtcgg gccggcgttc atcggccgcg tcgatgacgc
      421 gctcgacttc ctcgagggcg gcttccggat ctaggagcgg cgtctccggc cccgaatcgg
      481 cgtgacggcg actcggtaag ggaggggccg ccgtcactcc gcagcggaac gtagcggccc
      541 gccggacggg tgccaagagc cgtccgggcc cgtcggggcg ggcgcttcgg cccgccgcaa
      601 gcgagctctc cgtgcgcggc tcgcggatcg gcggccgccc ggcggtcggc ccgcggcgag
      661 ggttgcgaac ggccccccgc aacgcgccgt tcggcactcc ctggggtcca gccccgagac
      721 tagcgttcgc ctggaggtgg tcaatggccg tcgccgtacg tccggcacca gaggagatcc
      781 aggccgcgaa gccatttgcg ccgctcgaca tcgccatcga ccgctgcaag ggctgtcgac
      841 tctgcatcga tgtctgcccg cggcatgtcc tcgcgctcga tgagtcgttc gtcaacgggc
      901 tgggctatca cccggtccgc ctgaccgatc ccggcagctg caccagctgt gccctgtgcg
      961 cacggatctg cccggacgcc gtctacacgg tgtacgcacg accgaaggcg gtctgacatg
     1021 acgaccatga cgcgccgcgt cctgatgaag ggcaacgagg cgatggccga ggccgcggtc
     1081 caggcgggct gcgacgccta cttcggctac ccgatcacgc cgcaggcgga gctgctcgag
     1141 tggatggccc ggcgaatgcc cgagctcggc cgggtcttca tccaggctga gagcgagctc
     1201 ggcgccatca acatggcgct cggcgcggcc gcgaccggcg ctcgcgtgct ggtgtcctcg
     1261 tcgagcccgg gcatcagcct gatggccgag gggatgagct acatggccgg ttccgagctg
     1321 ccggtggtgc tgatcaacgt gatgcgcggc ggacccgggc tcgggagcat cggcgcctcg
     1381 cagtcggatt acttccaggc caccaagggc cacggccacg gcgactaccg ggttccggtc
     1441 ctggcgccgt cgtccatcgc ggaggcggtc gagatcgtcg ccgacgcgtt cgagatcgcc
     1501 gaacgctatc gcacccccgt gttcatcctg accgacggcg tgatgggcca ggcgatggag
     1561 cccgtcgttc ccgagtaccg gacgccgccg cgcccgcaaa gcgattggtc gctctccggc
     1621 gcggatggcc gcaagccccg ggtcgtgcac tcgctcgacc tcaagcccga ggacctcgag
     1681 gtccacaacc tcgccctcca ggccaagttc gccgagatcg ccgagcacga ggtccgctgg
     1741 gcgggggagt acctcgagga tgccgagatc gtggtggtcg cctacggcac cgccgctcgc
     1801 gtcgctcgca cggcggtcga gcgggctcgg gagcacggcc tgccggccgg catcttccgc
     1861 ccgatcacgc tctggccgtt cccgtcggcc gagctgcggg caatcgcccc gaggctccgc
     1921 gcagtcgtcg tcctcgagat gtccgccggc cagatggtcg aggatgtccg gctgtcggtc
     1981 gacggccggg cgccggtctt cttccatggc cggaccggcg gcatggtccc gacgcccggc
     2041 gaggtcgtcg acgagctcag gcgcgcctgg gcgacgacga caccggtcga tgacccggcg
     2101 cgggtcgacg cggccgccgc cgagccggac ccgttgagct tgatcgagca gggcgcctgg
     2161 gcggcggccg gaatcgggcg gtgagctgat gtcgaccctg acctccgaat cgaagcgcat
     2221 cgtctaccgc cggcccgacg cgctggccga ccggtcgacc cactactgcc cgggctgcgg
     2281 gcacggcatc gtccatcgcc tggtcgccga gctgctcgac gagctcggcg tcacgaagcg
     2341 cacgatcggc gtcgcgtcgg tcggctgcag cgtgttcgcc tacgactact tcacggtcga
     2401 cttcgtggaa tcgccgcacg gccgggcgcc ggccgtggcg acgggtgtcc gccggatgcg
     2461 ccccgacgc
//
LOCUS       DATDDI010000782         2523 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_599571, whole genome shotgun sequence.
ACCESSION   DATDDI010000782 DATDDI010000000
VERSION     DATDDI010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_599571"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..427
                     /locus_tag="VIU37_11420"
                     /pseudo
     CDS             110..427
                     /locus_tag="VIU37_11420"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(488..1573)
                     /locus_tag="VIU37_11425"
     CDS             complement(488..1573)
                     /locus_tag="VIU37_11425"
                     /inference="COORDINATES: protein motif:HMM:TIGR03118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03118 family protein"
                     /protein_id="HEY6014615.1"
                     /translation="MRRFLVLTAALGLALTAAAPVVAKSPHSAYDVTVLVSDDGAAGG
                     RADPRLVNAWGLSRTATSPWWVSDNGTDLTTLYTGAGVSPAPPAPQAVSVPGAPTGTV
                     ANTNPGFMVPGPAGTPVRAPFLFDTEAGTILGWQGAGTSSAVAGLDRSAAGAIYKGLA
                     IGTPNGIPTLYAADFHNARVDVVTADPIDPTTWVVQGSATAFVDPDLPAGYAPFGIQN
                     LNGMIFVTYAKQDADAADEIAGDGLGYVDAFGLDGSFLGRVASGDALNAPWGLAVAPA
                     DFGEFSGQLLVGNFGDGMINAFRWGSWEPDGHLKLDNHRPVRIDGLWAIAFGGGGTAA
                     SGPANSLYFTAGPGDEEHGAFGVITAD"
     gene            complement(1742..>2523)
                     /locus_tag="VIU37_11430"
     CDS             complement(1742..>2523)
                     /locus_tag="VIU37_11430"
                     /inference="COORDINATES: protein motif:HMM:NF023401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014616.1"
                     /translation="LGLCNVAINIQRTIADRLGVGMDDVALEHVGLNHLSWERAARVD
                     GVDRLPELLANDADWVADHVGLPVELIRTLGAIPSYYLHYYYETARVVAEQRDGHTRA
                     QDVIDIEARLLDMYRDQGLAEKPALLADRGSAYYSEAAAQLIASLHDGAGDVQVVDMR
                     NDGALPDLPDHAIVEIPARIDRDGAHALPLAPLAPEMRGLVQAAKAYEELTVEAACSG
                     DRRTALRALIANPLVGEWAIAEPLLAALLEANRSHLPRFFR"
BASE COUNT          340 a          888 c          945 g          350 t
ORIGIN      
        1 gcgccgaacg acacgacccc ggcggcgcga ccctggtgaa tgaaggccag ggcagcgggg
       61 agaggatccg ccacgccgag ctgctgccac gggagagcac cttcgcgggg ccggcgagac
      121 gtggctcggt gccttcgatg cggccgggtt gtgcggggcg atcgcctggc agcagctcga
      181 cgacgacacg atcgacatct gccggctggt cgttgcgcca cgcgcctttc gtgggggcgt
      241 cgcgaccgcg ttgctcgacg agctcgatcg ccgccacccg gcggcgccga tgatcgtgtc
      301 gacgggcagc gccaacgcgc cggcgctcga gctctaccgc cgtcgcggct tccgggaggt
      361 ccgccagcgg gaggcggccc cgggtctcat ggtcaccgag ctggcccggc cggtggcggg
      421 cgcctgacat ggcgaacggg ccggccaggt cggccggccc gtcctcgagc gcgaagggcg
      481 ccgaacgtca gtccgcggtg atcacgccga acgctccgtg ctcctcgtcg cccggcccgg
      541 cggtgaagta gaggctgttc gccggtccgg aggccgccgt gccgccaccg ccgaaggcga
      601 tcgcccacag gccgtcgatc cggacgggcc gatggttgtc gagcttgagg tgcccgtcgg
      661 gctcccagct gccccagcgg aaggcattga tcatgccgtc gccgaagttg ccgaccagga
      721 gctgcccgct gaactcgccg aagtcggcgg gggccacggc caggccccac ggggcgttga
      781 gcgcgtcgcc ggacgcgacc cgaccgagga acgagccgtc gagcccgaag gcgtccacgt
      841 acccgaggcc gtcaccggcg atctcgtcgg ccgcgtccgc atcctgcttg gcatacgtca
      901 cgaagatcat gccgttgagg ttctggatcc cgaagggcgc gtacccggcc ggcaggtccg
      961 ggtcgacgaa cgcggtcgcg gagccctgga cgacccaggt ggtcgggtcg atcggatcgg
     1021 cggtcacgac gtccacgcgg gcgttgtgga agtccgccgc gtacagggtc ggaatgccgt
     1081 tcggcgtccc gatcgcgagg cccttgtaga tggccccggc agccgaccga tcgagcccgg
     1141 cgacggcgct ggacgtgccg gcaccctgcc agccgaggat cgtgccggct tcggtgtcga
     1201 acaggaatgg cgcacggacc ggcgtcccgg ccgggcccgg caccatgaaa cccgggttcg
     1261 tgttggccac ggtgccggtc ggcgctccgg gcacgctcac cgcttgcggg gcgggcggtg
     1321 ccggcgacac gccggcaccg gtgtacaggg tcgtcaggtc cgtcccgttg tcggacaccc
     1381 accacgggct ggtggcggtc cggctgagac cccacgcgtt gaccaggcga ggatcggcgc
     1441 ggccgcccgc cgcgccgtca tccgatacga gcacggtcac gtcgtacgcg ctgtgtgggg
     1501 acttggccac gaccggcgcc gctgccgtca gcgcgaggcc gagcgcagcc gtcaggacaa
     1561 ggaatcgacg catcatcacg tcctccgctt ggttgggcgg cccacggggt tggagatggg
     1621 ccgcggttca ccccggtacg gagacctacg tcgggccagt cgagggcggt ttcgcggagg
     1681 ctccgcgagg tgggcgctgg acgggcgccg gggcgacgct ccgggcgcga gggccggcgc
     1741 gctaccggaa gaagcggggg aggtggctcc ggttggcctc gagcagcgcc gccagcagcg
     1801 gctcggcgat cgcccactcg ccgacgagcg ggttggcgat gagcgcgcgc agggcggttc
     1861 gccgatcgcc ggagcaggcc gcctcgaccg tcagttcctc gtacgccttc gccgcctgga
     1921 cgagaccgcg catctcgggc gccagcggcg cgagcggcag cgcgtgcgcg ccgtcgcgat
     1981 cgatccgggc cgggatctcg acgatcgcgt ggtcgggcag gtccggcagc gcgccgtcgt
     2041 tccgcatgtc gaccacctgg acgtcgcccg caccgtcgtg gagcgacgcg atgagctgcg
     2101 ccgccgcctc gctgtagtag gcactgcctc ggtccgccag gagggccggc ttctcggcca
     2161 ggccctggtc tcggtacatg tcgaggagcc gcgcctcgat gtcgatgacg tcctgggccc
     2221 gggtgtgccc gtcgcgctgc tcggccacga ccctggccgt ctcgtagtag tagtgcaggt
     2281 agtacgacgg gatggcgccc agcgtccgga tcagctcgac cggcagcccg acgtggtccg
     2341 ccacccagtc ggcatcgttc gccagcagct ccggcagccg atccacgccg tcgactcgcg
     2401 ctgcgcgctc ccagctcagg tggttgaggc cgacgtgctc gagggcgaca tcgtccatgc
     2461 ccacgcccag ccgatcggcg atcgtccgct ggatgttgat cgcgacgttg cacaacccga
     2521 gtg
//
LOCUS       DATDDI010000783         1764 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_328891, whole genome shotgun sequence.
ACCESSION   DATDDI010000783 DATDDI010000000
VERSION     DATDDI010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328891"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VIU37_11435"
     CDS             <1..391
                     /locus_tag="VIU37_11435"
                     /inference="COORDINATES: protein motif:HMM:NF012564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEY6014617.1"
                     /translation="NFFSPHTFVYILLYFLLTVGFTYFYTAFTFKPDETAEQLRKNGG
                     FIPGIRPGRPTQDYLSRVVTRITLAGALFLGTVAVAPNLIGLAIPDLGTLGLGGTSLL
                     IVVSVVVETMKQIEAQLMMRNYEGFIR"
     gene            558..1223
                     /locus_tag="VIU37_11440"
     CDS             558..1223
                     /locus_tag="VIU37_11440"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF011100.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEY6014618.1"
                     /translation="MTVLVLLGAPGAGKGTQAPILAEHLGVPILASGDLLRAAVAAGT
                     PLGRAADRYMSRGQLVPDDTIVDIFLERLAAADAGSGAVLDGFPRTRGQAEALDRALA
                     PRGTRVNLALYIDVPTDDLVARMASRRICTANGHVYNVASNPPAVAGTCDLDGSPLVQ
                     RADDSEETVRARMAQQIPPLLDVVDHYRRTGVLRTIDGLRPIHEVTSRLLAELSHGQV
                     GAA"
     gene            1223..>1764
                     /gene="map"
                     /locus_tag="VIU37_11445"
     CDS             1223..>1764
                     /gene="map"
                     /locus_tag="VIU37_11445"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEY6014619.1"
                     /translation="MVTRKSRSEIERMRRAGRVVAEVLDLIEAELRPGVSTAELDAIA
                     EAHIRSVGAVPSFKGYPGINPNRPFPASVCISIDNEIVHGIPGDRNLREGQIVSVDAG
                     AIVDGWHGDGARTFYIGDAPPRVRQLIDLTRDAMLAGIAAAAPGNHIEDISAAVQDVA
                     TAAGFGVIRQFVGHGIGTAM"
BASE COUNT          242 a          654 c          599 g          269 t
ORIGIN      
        1 caacttcttc tcgccccaca cgttcgtcta catcctcctg tacttcctgc tgaccgtcgg
       61 gttcacctac ttctacaccg ccttcacgtt caagccggac gagaccgccg agcagctccg
      121 caagaacggt ggcttcattc cgggcatccg gcccggccgg ccgacgcagg actacctgtc
      181 ccgcgtcgtc acccggatca cgctcgccgg cgcgctcttc ctgggtacgg tcgcggtcgc
      241 cccgaacctc atcgggctgg cgattccgga cctcgggacc ctgggtctcg gcggcaccag
      301 cctgctgatc gtggtgtcgg tcgtggtcga gaccatgaag cagatcgaag cgcagctgat
      361 gatgcgcaac tacgaaggct tcattcgatg accctgtcgg tcaccacggc atcgcccgtg
      421 gcgggccatt cccgcgttgt cgggtccgcg cgctcgctta cgcacccgag ggtgcgcgcg
      481 ctcccgggtg cgcgctcgcg cgcgttctcc ccgacgcctt ggactgacct cgccatgagc
      541 ggtgcgaccg ggttcaggtg accgtcctgg tcctcctcgg tgcgccgggt gccgggaagg
      601 ggacccaggc gccgatcctg gcggagcatc tcggggtgcc gatcctcgcg tccggcgacc
      661 tgttgcgcgc cgccgtcgcg gcgggcacac ccctcgggcg ggccgccgac cggtacatga
      721 gccgcgggca gctcgtgccc gacgacacca tcgtggacat cttcctcgag cggctcgcgg
      781 ccgccgacgc ggggagcggt gccgtgctgg acgggttccc gcggacgcgt gggcaggcgg
      841 aggccctcga ccgggctctg gcgccgcgcg gcacccgggt gaacctcgcc ctgtacatcg
      901 acgttcccac cgacgacctc gtcgcccgga tggcgagccg ccggatctgc accgccaacg
      961 gccacgtcta caacgtcgca tcgaacccgc cggccgtcgc gggcacctgc gacctcgacg
     1021 gctcgccgct ggtccagcgt gccgacgaca gcgaggagac ggtccgggcc cgcatggccc
     1081 agcagatccc gcccctgctc gacgtcgtcg accactaccg gaggaccggc gtccttcgca
     1141 cgatcgacgg gttgcgcccg atccacgagg tgacgtcgcg gctgctcgcg gagctttccc
     1201 acggccaggt cggggcggcc tgatggtgac ccgcaagtcc cgctcggaga tcgagcggat
     1261 gcgtcgagcc ggacgggtcg tcgccgaggt gctcgacctg atcgaggcgg agctccggcc
     1321 cggcgtctcc acggccgagc tggacgccat tgccgaggcc cacatccggt cggtcggggc
     1381 ggttccctcg ttcaagggct acccggggat caacccgaac cgaccgttcc cggccagcgt
     1441 gtgcatctcg atcgacaacg agatcgtcca cgggatcccg ggcgaccgga acctccgcga
     1501 gggccagatc gtgtcggtcg acgccggcgc gatcgtggac ggctggcacg gcgacggcgc
     1561 ccgcaccttc tacatcgggg acgcgccgcc ccgggtacgc cagctgatcg acctgacccg
     1621 cgacgcgatg ctggccggga tcgcggccgc cgcacccggc aatcacatcg aggacatctc
     1681 cgcggcggtc caggacgtgg cgacggcggc cggcttcggg gtcatccggc agttcgtcgg
     1741 gcacggtatc gggaccgcga tgca
//
LOCUS       DATDDI010000784         2462 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_224697, whole genome shotgun sequence.
ACCESSION   DATDDI010000784 DATDDI010000000
VERSION     DATDDI010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224697"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1019
                     /locus_tag="VIU37_11450"
     CDS             69..1019
                     /locus_tag="VIU37_11450"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEY6014620.1"
                     /translation="MVAPAPTAGVRLLLVPAGPGGRADRYVADATGMSRSFVQKLISD
                     GRLTAGGTQLRANTIVAAGTELRLDVPEPTVLDLAPAPEIVLSVVYEDDDVLIVDKPA
                     GLVVHPAPGHADGTLVNALLAHGDGATWGGIAGVQRPGIVHRLDRDTSGLIMIARTDR
                     AQASLMSQLKARRVKKTYLALVQGSVSAAVGRIEAPIGRDPKHRTRMAVVPDGRPSVT
                     GYRVRERFDAWTLLELDLVTGRTHQIRVHLDAIGHPVAGDPVYGTGTSRRGPAGLGRL
                     FLHAWRLELNAPSDGHLIRATAPLPTELERVLERLREPVR"
     gene            1016..1681
                     /gene="gmk"
                     /locus_tag="VIU37_11455"
     CDS             1016..1681
                     /gene="gmk"
                     /locus_tag="VIU37_11455"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR03263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEY6014621.1"
                     /translation="MNETPGSGGTETTAAAGATGRAARGAMLVIISGPSGVGKDTIIE
                     ALRRRPRDPDYHYVVTCTTRARRPGEIDGVSYQFLTTKEFLALRDSGGLLEANEVHDH
                     WYGTPRAQVREALETGHDVILKIDVQGAQQVKERVPNALLVFVVPPSLETLFRRLRAR
                     ATETADQLELRQRNAAIELARQEDYDYVVINEDGQVEKTAERIDEIIADEHRRHPFRV
                     VHL"
     gene            1694..>2462
                     /locus_tag="VIU37_11460"
     CDS             1694..>2462
                     /locus_tag="VIU37_11460"
                     /inference="COORDINATES: protein motif:HMM:NF036997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014622.1"
                     /translation="MTLGLDDPGPARPSGSAAARLVEVAVDAAGGRAQTYTYTVPPEL
                     ADLGAGEAVLVEFGRRQALGIVVADTDRAPAATPRPIVARVRADGPLLPPLSLRLAAW
                     VAGHYLAPPALVLRAMLPPGLLERLELLAERLPDDLGTASGAVAPVAERAPDAARADL
                     LDQLERGPRPVRDLAGPDGRAGLLRRLRALESEGLVSLEWTLLGAGAGPRYERWVRIN
                     AEGRAAVAPGTRRAGRPLGPRQSAALRELAEGASGEAP"
BASE COUNT          333 a          925 c          897 g          307 t
ORIGIN      
        1 cgcgatcgtc ctcctgctcg ccgtggccgt cgtgccgagc ctcgcccgga tcgtggactc
       61 gcggttcgat ggttgccccc gccccgaccg ccggcgtccg cctcctgctg gtccccgcgg
      121 gaccgggcgg acgggccgac cgctacgtgg ccgacgccac cggcatgtca cggagcttcg
      181 tccagaagct gatctcggac ggacggctga ccgccggcgg gacccagctt cgcgccaaca
      241 cgatcgtcgc ggccggcacg gagctgcgcc tggacgtccc cgaaccgacc gtgctggacc
      301 tcgctccggc gcccgagatc gtcctcagcg tggtctacga ggacgacgac gtcctgatcg
      361 tcgacaagcc ggcggggctg gtggtccatc cggcgcccgg tcatgccgac gggaccctgg
      421 tcaatgcgct cctggcccat ggcgacgggg cgacctgggg cggcatcgcg ggcgtccagc
      481 ggcccgggat cgtccatcgc ctcgaccgcg acaccagcgg cctgatcatg atcgcgcgga
      541 cggatcgggc ccaggcctca ttgatgagcc agctcaaggc gcgtcgggtg aagaagacct
      601 acctggccct cgtgcagggc agcgtctcgg ccgccgtggg ccggatcgag gcgccgatcg
      661 ggcgcgaccc caagcaccgg acccggatgg cggtcgtccc cgacgggcgg ccgtcggtca
      721 ccgggtaccg ggtccgtgag cggttcgacg cctggacgct gctcgagctg gatctcgtga
      781 ccggccggac gcaccagatc cgcgtccacc tcgacgcgat cgggcacccc gtggccggtg
      841 accccgtcta cgggaccggg acctcgcgcc gcggaccggc cgggctgggc cggcttttcc
      901 tgcacgcctg gcggctcgag ctcaacgcgc cgtcggacgg ccacctcatc cgggcgaccg
      961 ctccgctccc gaccgagctg gaacgggtcc tcgagcggct gcgcgagccg gttcgttgaa
     1021 cgagacgccc ggatccggag ggacggagac gaccgcagcg gccggagcga ccggccgggc
     1081 cgcccgcggg gcgatgctgg tcatcatctc gggcccgagc ggggtgggca aggacacgat
     1141 catcgaggcg ctccgccgac ggccccgcga tccggactac cactacgtcg tgacctgcac
     1201 gacgcgagcg cgacggcccg gcgagatcga cggggtgagc tatcagttcc tgacgacgaa
     1261 ggagttcctg gcgctccgcg acagcggcgg gctgctcgag gccaacgagg tgcacgacca
     1321 ctggtacggg acaccgcggg cacaggtccg cgaggcgctg gagacgggcc acgacgtcat
     1381 cctcaagatc gacgtccagg gagcgcagca ggtcaaggag cgtgtcccga acgccctgct
     1441 cgtgttcgtc gtgccgccct cgctggaaac cctgttccgc cggctacggg cacgcgcgac
     1501 cgagaccgcc gaccagctgg agctgcgcca gcgcaacgcg gcgatcgagc tggcgcgcca
     1561 ggaggactac gactacgtcg tgatcaacga ggatggccag gtcgagaaga ccgccgaacg
     1621 gatcgacgag atcatcgccg acgagcatcg ccgccatccg ttccgcgtcg tccacctcta
     1681 gcgacggccg gtcgtgaccc tcggtctcga cgacccggga ccggcgcgac catcggggag
     1741 cgccgccgcg cggctggtcg aagtggccgt cgacgccgcc gggggccggg cccagaccta
     1801 tacctacacg gtcccgccgg agctcgccga cctcggggcc ggcgaggccg tcctcgtcga
     1861 gttcgggcga cggcaggccc tcgggatcgt cgtcgccgac accgatcggg cgcccgctgc
     1921 gacgcctcgc ccgatcgtgg ccagggtccg cgccgacggc cccctgctgc cgcccctcag
     1981 cctgcggctg gccgcctggg tcgccgggca ctacctcgcc ccgccggccc tcgtcctccg
     2041 cgcgatgctg ccgccggggc tcctcgagcg gctcgagctg ctggccgagc gcctgccgga
     2101 cgacctcgga accgcgtccg gggccgtcgc ccccgtggcc gagcgcgccc ccgacgcggc
     2161 tcgtgccgac ctgctcgacc agctcgagcg aggtccgcgc ccggtgcgcg acctggccgg
     2221 cccggacggc cgggccgggc tgctccgccg gctccgggca ctggaatccg aagggctcgt
     2281 ctcgctcgag tggacgctgc tcggggcggg agccggaccc aggtacgagc gatgggtccg
     2341 gatcaacgcg gagggtcggg ccgccgttgc gccgggcacg aggcgagccg gccggccact
     2401 cgggccacgc cagtcggccg cactccggga actggccgag ggcgcgagcg gtgaggcgcc
     2461 gg
//
LOCUS       DATDDI010000785         2018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_370759, whole genome shotgun sequence.
ACCESSION   DATDDI010000785 DATDDI010000000
VERSION     DATDDI010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2018
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370759"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..705
                     /locus_tag="VIU37_11465"
     CDS             70..705
                     /locus_tag="VIU37_11465"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY6014623.1"
                     /translation="MIDLAAFDVAAGAPSDSRRPGAVALAVGNLLPVKRFDRFLEALA
                     AARRRGIALAGAVVGDGPERAALEGLAARLGLLPDGVRFLGARSDVPALLADADFLVV
                     TSGHEGFPNVVLEAYAASRPVIATPCGDLERLVREETTGFVVPFDDVDALADRMARLA
                     ESAELRRRAGVAGRSLVERSYGRAALAGHLLGAYQAIAARRRSPQLAEVLA"
     gene            complement(783..>2018)
                     /locus_tag="VIU37_11470"
     CDS             complement(783..>2018)
                     /locus_tag="VIU37_11470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014624.1"
                     /translation="GTTAVTDTATTTSSGGTTTHAGYYVSPNGSSGGSGSITSPWDLA
                     SALSGNRGVVAGDTIWVRGGRYSGQFTNYLNGNTSQQIVVRQYPGERATIDGTILVMG
                     SYVSFWGLEVMSSNPTSSSSIGVNLKAPGSRLINMVIHDAGVSGVGAWNEAPNAEVYG
                     SIIYNNGTHANLDHGVYFNGSTGTKYITDNIVFDNWAFGLHAYSPTTGELNNLRIDGN
                     TSFNNGSIGPYTHNPDLYVGGSSITNLTITNNNTWQWTDAELTLWLGAGSTSNQGLTL
                     TNNRTVGGTSLGTWSSVTQSGNLYWSAASPPTSGLYVLVRPNRYEAGRANITVYNWSN
                     LSSASADLSGVLRTGDTYEVRDAQNFFGAPVAQGTYGGGSISLPMTAITPPAPIGRSY
                     SPLRSTGTTFHAFVVLKTN"
BASE COUNT          277 a          652 c          744 g          345 t
ORIGIN      
        1 acctgggcgg cgaaggccgc cgccgagcgg cttggccggc agcccgccac cgtccacgtc
       61 gtgccgaacg tgatcgacct cgccgcgttc gacgtcgccg cgggcgctcc gtcggattca
      121 cgccgaccgg gggccgtcgc actcgcggtc ggcaatctcc ttccggtcaa gcgtttcgac
      181 cgtttcctgg aagccctggc cgccgcacgg cgccgaggta tcgcactcgc cggcgcggtg
      241 gtgggcgacg gtccggagcg ggccgcgctc gaaggcctgg cggcccgact cgggctgctg
      301 cccgacggcg tgcgcttcct cggcgcccgg agcgacgtgc cggcgctgct cgccgacgcc
      361 gatttcctgg tggtgacgtc gggtcacgag ggattcccca acgtcgtgct cgaagcctac
      421 gccgcgagcc ggccggtgat cgcgacgcca tgcggagacc tggagcggct ggtccgcgag
      481 gagacgaccg gattcgtggt gccgttcgac gacgtggacg cgctggcgga ccggatggca
      541 aggctggcgg aatcggccga gcttcggcgg cgggccggcg tcgctggccg aagtctggtg
      601 gagcggagct acggccgggc agcactggcc gggcatctgc tcggggccta tcaggcgatc
      661 gcggcgcgcc gccgttcacc gcagctcgct gaggtgctgg catgaccgcg cgcggcgggg
      721 agcggaaacg gaacaggccg gacgtctccg cccggcctgc tcccgcgtca cggctgctgc
      781 cgtcagttcg tcttcagcac cacgaaggcg tggaaggtcg tgcccgtcga ccggagcggg
      841 ctgtaggagc gaccgatcgg cgccgggggc gtgatcgccg tcatggggag cgaaatcgag
      901 ccgccgccgt aggtgccctg cgcgaccggc gccccgaaga agttctgcgc gtcacggact
      961 tcgtaggtat cgccggtccg cagcactccg gagaggtcgg cgctggcgct ggacaggttc
     1021 gaccagttgt acaccgtgat gttggcacgg ccggcctcgt accggttggg ccgcacgagg
     1081 acgtacaggc ccgaggtcgg cggggaggcg gcggaccagt acaggttgcc cgactgcgtg
     1141 acgctcgacc aggtgccgag cgacgtgccg ccgacggtcc ggttgttggt cagcgtcagc
     1201 ccctgattgc tggtcgagcc ggcgcccagc cacaacgtga gctccgcgtc ggtccactgc
     1261 caggtgttgt tgttcgtgat cgtcaggttc gtgatcgacg agccgccgac gtagagatcg
     1321 ggattgtggg tgtacggacc gatcgagccg ttgttgaacg aggtgtttcc gtcgatccgg
     1381 agattgttca gctcgccggt cgtcggggaa taggcgtgca ggccgaatgc ccagttgtcg
     1441 aagacgatgt tgtcggtgat gtacttggtg ccggtcgacc cgttgaagta caccccgtga
     1501 tcgaggttcg cgtgggtccc gttgttgtag atgatcgacc cgtagacctc ggcgttgggc
     1561 gcctcgttcc acgcgccgac gccgctgacg ccggcatcgt ggatgaccat gttgatcagc
     1621 cggctgcccg gcgccttcag attcacgccg atgctgctgc tgctcgtcgg gttggagctc
     1681 atgacctcga ggccccagaa cgacacgtag gagcccatga cgaggatggt gccgtcgatc
     1741 gtggcgcgct cacccggata ctggcgcacg acgatctgct gcgacgtgtt gccgttcagg
     1801 tagttggtga actgcccgct gtagcggccg cctcgaaccc agatcgtatc gccggccacg
     1861 acgccccggt tgccgctcag ggcgctggcg aggtcccagg gactcgtgat gctgccgctg
     1921 ccccccgaag agccgttcgg cgagacgtag tacccggcat gcgtcgtcgt tccgccactg
     1981 gaggtggtgg tcgcggtgtc ggtcacggcg gtggtgcc
//
LOCUS       DATDDI010000786         2030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_495525, whole genome shotgun sequence.
ACCESSION   DATDDI010000786 DATDDI010000000
VERSION     DATDDI010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495525"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /locus_tag="VIU37_11475"
     CDS             <1..765
                     /locus_tag="VIU37_11475"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY6014625.1"
                     /translation="SEAAAGLATVHRTTRIAGRTLLQRAVPTTFGLKAANWMLGLDRA
                     ADRLAEIRRVGLAVQLGGVAGTRAGYGGHGQRIAEGMADRLGLTVPVAPWHTERTRIG
                     DLASGLGVAAGAVAKPARDVILLAQTEIAEVEEGVPGRGGSSALPDKHNPVAAVSAVA
                     CAQRSHGLVATLFATMVQEHERGAGNWQAEWVPLRQLFVTVDSAAAWLRDSLEHPRIR
                     PAARARNLGPDPSPDLGDAVALVDAALLEHRARGSR"
     gene            762..1523
                     /locus_tag="VIU37_11480"
     CDS             762..1523
                     /locus_tag="VIU37_11480"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6014626.1"
                     /translation="MTAVVDLHHRIDGPDGAPDVVLLHAIGTSLRMWAPQLSELARDH
                     RVISIDLRGHGRSPVPPGPYTMGDLAGDVSAVLDRLGIERASICGLSLGAMVGVTLAA
                     MTPERVDRLIAACVVAAPSSPTAWHERAQRMLAGGAPAISDLVVERWGYRDRDPSIAA
                     LILDMLAATPPDGYAGCCEAIAGMDLRPLLPLVAAPALLLVGSEDPAAPASAARDMVT
                     SMPNARVAVIDGAAHLINVEAPAATTQAILEHLRR"
     gene            1527..1934
                     /gene="pcaC"
                     /locus_tag="VIU37_11485"
     CDS             1527..1934
                     /gene="pcaC"
                     /locus_tag="VIU37_11485"
                     /EC_number="4.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:TIGR02425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047575 - 4-carboxymuconolactone
                     decarboxylase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-carboxymuconolactone decarboxylase"
                     /protein_id="HEY6014627.1"
                     /translation="MSRSDEERFEAGMRVRREVLGDEHVDRAIARTSAFTEPFQSFIT
                     RAAWGDVWDRPGLDRRSRSMVTLAALTALRAEGEIGMHVRAAIRNGLTREEIAEVLLH
                     ASIYAGLPAGNAAFAIAQETLDELDRSADSGER"
BASE COUNT          267 a          727 c          757 g          279 t
ORIGIN      
        1 tcggaggcgg ccgccggact cgcgaccgtc catcggacga cccggatcgc cggccgcacg
       61 ctcctccagc gcgcggtccc gacgaccttc gggctcaagg ccgcgaactg gatgctgggc
      121 ctcgatcgcg ccgccgaccg gctcgcggag attcggcggg ttggtctcgc cgtccagctc
      181 ggaggcgtcg cggggacgcg ggcgggctac ggcggccacg ggcagcgcat cgcggagggg
      241 atggccgacc ggctcggcct gacggtcccg gtcgcgccgt ggcacacgga gcgaacgagg
      301 atcggcgacc tggcgtcagg cctgggcgtg gcggccggag cggtcgcgaa gccggcgcgg
      361 gacgtcatcc tcctggccca gaccgagatc gccgaggtgg aggagggcgt ccccgggcgc
      421 ggaggctcct cggcgctgcc ggacaagcac aacccggtcg ccgcggtctc cgcggtggcc
      481 tgcgcccagc gttcgcacgg gctggtcgca acgctgttcg cgacgatggt gcaggagcat
      541 gagcgcggcg cgggcaactg gcaggccgag tgggtgccgc tgcgccagtt gttcgtcacc
      601 gtggattccg cggcggcctg gctgcgcgac agtctcgagc acccccgcat ccggcccgcg
      661 gcgagggccc ggaacctcgg ccccgaccct tcgccggatc tcggcgacgc ggtcgcgctc
      721 gtcgatgcgg cactcctcga gcaccgcgcg aggggttcgc gatgaccgcg gtcgtcgacc
      781 tccaccaccg gatcgacggc cccgacggag cgcccgacgt cgtgttgctg cacgccatcg
      841 ggacgtcgct gcggatgtgg gcgccacagt tgtccgaact ggcgcgtgat caccgggtga
      901 tctcgatcga tctgcgcgga catggacgtt cgccggtacc gcccgggccg tacacgatgg
      961 gcgacctcgc cggggacgtc agcgcggtgc tcgaccggct cgggatcgag cgtgcctcga
     1021 tctgcgggct ctcgctcggg gcgatggtcg gcgtcaccct cgcggcgatg acacccgagc
     1081 gggtcgatcg gctcatcgcc gcctgcgtcg tcgccgcccc gagctcgccg acggcctggc
     1141 acgaacgcgc gcagcgcatg ctggccggcg gcgcgccggc gatctcggat ctcgtcgtcg
     1201 agcgatgggg ctaccgggac cgcgacccgt cgatcgcggc gctcatcctg gacatgctcg
     1261 ccgcgacgcc gccggacggg tatgccggtt gctgcgaggc gatcgccggg atggacctcc
     1321 gccccctcct gccgctcgtc gcggcaccgg cgctcctgct ggtcggcagc gaggacccgg
     1381 ccgcgccggc gtcggcggcc cgcgacatgg tcacgtcgat gcccaacgcc cgcgtcgccg
     1441 tcatcgacgg ggcggcccac ctcatcaacg tggaggcccc ggccgcgacg acccaggcca
     1501 tcctcgagca tctgcggagg tgaacgatgt cccggtctga cgaggagcgg ttcgaagccg
     1561 ggatgcgggt gcgccgcgaa gtgctgggcg acgagcacgt ggaccgagcg atcgcccgga
     1621 ccagtgcgtt cacggagccg ttccagtcgt tcatcacgcg cgccgcgtgg ggcgatgtct
     1681 gggaccgtcc aggactcgac cgccgatcgc gttcgatggt caccctggcc gcgttgacgg
     1741 cactccgcgc ggaaggcgag atcggcatgc acgttcgggc ggcgatccgc aacggactga
     1801 cccgcgagga gatcgccgag gtcctgctcc acgcgtcgat ctacgccggc cttcccgccg
     1861 ggaacgccgc attcgcgatt gcccaggaga cgctcgacga gctggaccgg tcggcggatt
     1921 caggggagcg gtaggccggt gtagttcacg gccagggccc gggcagccgg ctccgagact
     1981 gtcagggtct ccagcctcgc cagctgcagg cgatcacgga acggatcgtc
//
LOCUS       DATDDI010000787         1730 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_474455, whole genome shotgun sequence.
ACCESSION   DATDDI010000787 DATDDI010000000
VERSION     DATDDI010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474455"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(225..488)
                     /locus_tag="VIU37_11490"
     CDS             complement(225..488)
                     /locus_tag="VIU37_11490"
                     /inference="COORDINATES: protein motif:HMM:NF013334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEY6014628.1"
                     /translation="MHELGIADRLLEVVLERAGAAGATRVTDVHLEIGEESDVAPEAL
                     EHYWPQVSLGTPAAGARLVFRAAASSDPFACRVVGIDVPDAGS"
     gene            complement(488..1018)
                     /locus_tag="VIU37_11495"
     CDS             complement(488..1018)
                     /locus_tag="VIU37_11495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protease"
                     /protein_id="HEY6014629.1"
                     /translation="MSFAATTERHRPTLVIGLGNPILGDDGVGWRVVEALEDRLAGDD
                     DARRGAGEIELDRVAIGGLSLMERLVGYERVVLVDAILGVSRPGTLLVGSLEELAGGL
                     AGHLDSAHDAPLVEALSAGRALGARLPVEITVVGIAVQRVDVFDEHLSAAVAAAVGPA
                     VSAILSAIGRQPVAVA"
     gene            complement(996..>1730)
                     /locus_tag="VIU37_11500"
     CDS             complement(996..>1730)
                     /locus_tag="VIU37_11500"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEY6014630.1"
                     /translation="DGESLGTYAPAEYRDWIAEHVEPWTYLTFPYLRRIGWKGFVDGK
                     DSGIYCVGPLGRLNAATGMATARAQEAYERYFATLAPAVDGHRRVVHQRGASHWARLI
                     EMLYAAERMLELVADPDITSDDVRTVPSQVPTEGVGTVEAPRGTLTHHYWTDGRGILT
                     RVNLVVGTTNNHAPIAMSIDRAARGLIRSGVVVDNGLLDRIEMAFRAYDPCFGCATHS
                     LPGHMPLQVTIRDAHGATVDVLRRDD"
BASE COUNT          253 a          642 c          600 g          235 t
ORIGIN      
        1 ggcgtctatt cgaacttcct cgaggtcgag ggcgacgccc ggatccgggc ggcctacccg
       61 aacggcgcgt acgagcgtct ggccgagatc aagcgccgct acgacccggc caacctgttc
      121 cggctcaacc agaacatccg accgtcgggt gccggcctct gaggggacgg acggcattcc
      181 cgtacgaccg aacggcgtcg ctggggcggc gccgttcgga ttccctagga cccagcgtcc
      241 gggacgtcga tgccaaccac ccggcaggcg aacggatcgc tcgacgccgc ggcacggaag
      301 accagccggg cacccgcggc cggcgtgccc aggctgacct gcggccagta gtgctcgagt
      361 gcctccggcg cgacgtccga ttcctcaccg atctcgagat gcacgtccgt gacgcgtgtc
      421 gctccggcgg ccccggcccg ttccagcacg acctcgagga gccggtcggc gatccccagc
      481 tcgtgcatca ggcgaccgcc acgggctgcc ggccgatcgc cgacaggatc gcgctcaccg
      541 ccggtccgac ggctgcggcc accgccgcgg acaggtgctc gtcaaagacg tcgacgcgct
      601 ggacggcgat cccgaccacg gtgatctcca cgggcagccg ggcaccgagc gcccgaccgg
      661 ccgacagcgc ctcgaccagc ggggcgtcat gcgcggaatc gaggtggccc gccaggccgc
      721 cggccagctc ctcgagcgag cccaccagga gggttcccgg tcgcgacacg ccgaggatcg
      781 cgtcgaccag gacgacgcgc tcatacccga ccaggcgctc catgaggctc agtccgccga
      841 tggcgacccg gtcgagctcg atctcgcccg cgccgcgtcg cgcgtcgtcg tcgccggcca
      901 gccgatcctc gagcgcctcg accacccgcc agccgacgcc gtcgtcgccc aggatcgggt
      961 tgccgagccc gatcacgagc gtcggccggt gccgctcagt cgtcgcggcg aaggacatcg
     1021 accgtggctc cgtgcgcgtc ccggatcgtc acctggaggg gcatgtggcc gggcagcgaa
     1081 tgcgtcgcgc aaccgaagca ggggtcgtac gcgcggaacg ccatctcgat ccggtcgagc
     1141 aggccgttgt ccacgaccac gccggaacgg atgagcccgc gcgcggcgcg atcgatcgac
     1201 atcgcgatcg gcgcgtggtt gttggtggtc ccgacgacca ggttgacccg ggtcaggatc
     1261 ccgcgcccgt cggtccagta gtggtgggtc aacgttccgc gcggggcctc gaccgtgccc
     1321 accccctcgg tcggcacctg gctggggacc gtccggacgt cgtcggaggt gatgtcggga
     1381 tcggccacca gctcgagcat ccgctcggcc gcgtagagca tctcgatcag gcgggcccag
     1441 tgactcgcgc cacgctggtg gacgacccgg cggtgcccgt ccaccgcggg cgccagcgtc
     1501 gcgaagtagc gctcgtaggc ttcctgcgcc cgtgctgtgg ccatgccggt cgccgcgttc
     1561 agccgtccca gcgggccgac gcagtagatc ccggagtcct tgccgtcgac gaagcccttc
     1621 cagccgatcc ggcgcaggta cgggaatgtc aggtaggtcc acggctcgac gtgctcggcg
     1681 atccagtcgc ggtactcggc cggggcgtac gtcccgagcg attcgccatc
//
LOCUS       DATDDI010000788         2034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_536891, whole genome shotgun sequence.
ACCESSION   DATDDI010000788 DATDDI010000000
VERSION     DATDDI010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536891"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1331)
                     /locus_tag="VIU37_11505"
     CDS             complement(<1..1331)
                     /locus_tag="VIU37_11505"
                     /inference="COORDINATES: protein motif:HMM:NF013697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEY6014631.1"
                     /translation="MNARRSVPKGFIGLLGVVAIIASACGSSTTSTAPSAAASEAPSA
                     AAATEAPSPSLVNITPAPIAAGPGPNGGTVVRWFIGLGAGTQPAQIGPEQAFITAFNN
                     SQKDVYIQYEIVDNTQASNILKTEIAAGNAPDIIGPVGVEGLNLFQDQLLDLKPLVDS
                     TGYKATGVDQSLVDFFNSLGQNGSTVGLPFAVYPSFIFYNKDLFDEAGLPTPPTKVGD
                     LYDGKPWDLDALRTLSMKLTVDKNGKDATQAGFDPNNIVQWGFEAQYMDNYNLRAESA
                     FFGAGALQDSSGKAVIPDYMAQAAKWYNDGVWKDHFIPTANQVTSDLLSGGSEFASGN
                     VAIDEGHTWFTCCVTPSAPKKPFKFGFAVQPTVNGKITSPLHADTFSILKTTKVPDAA
                     FKALQAIVASGDLLTAYGAMPADQTKQQAWFDSIDAQFPGMKLDWDVAKQML"
     gene            complement(1441..>2034)
                     /locus_tag="VIU37_11510"
     CDS             complement(1441..>2034)
                     /locus_tag="VIU37_11510"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY6014632.1"
                     /translation="IPLVLVGRPPRGISASYVDVDNRQGARSAVEHLIAGGRRVIATI
                     TGPSDMPAGMDRLAGYREAVAEAGLEADPRLEAKGDFTQAGGAEAMTRLLAARPDIDA
                     VFAASDLMAVGALSVLAATGRRVPKDVALVGYDDSPVATSTNPQLTSVHQPIEEMGRE
                     VARLLVEAVEGTDRVIRRVILATDLVKRASSAGRPAP"
BASE COUNT          285 a          645 c          748 g          356 t
ORIGIN      
        1 agcatctgct tggcgacgtc ccagtcgagc ttcatgcccg ggaactgggc gtcgatcgag
       61 tcgaaccacg cctgctgctt ggtctgatcg gccggcatgg cgccgtaggc ggtgagcagg
      121 tcgccggagg cgacgatcgc ctggagggcc ttgaacgccg catccgggac cttggtggtc
      181 ttgagaatgc tgaacgtgtc ggcgtggagt ggcgacgtga tcttgccgtt gacggtgggc
      241 tggacggcga agccgaactt gaacggcttc ttgggcgccg acggggtgac gcagcaggtg
      301 aaccaggtgt gtccctcgtc gatcgcgacg ttgccggagg cgaactcgct gccaccgctg
      361 agcaggtcgc tcgtgacctg gttggcggtc gggatgaagt ggtccttcca gacgccgtcg
      421 ttgtaccact tggccgcctg ggccatgtag tcggggatga cggccttgcc ggagctgtcc
      481 tgcagggcac cggccccgaa gaacgcgctc tcggcgcgga ggttgtagtt gtccatgtac
      541 tgggcttcga agccccactg gacgatgttg ttcgggtcga acccggcctg ggtggcgtcc
      601 ttgccgttct tgtcgacggt gagcttcatg gacagcgtcc ggagggcgtc gaggtcccac
      661 ggcttgccgt cgtacaggtc accgaccttg gtcggcgggg tcggcagccc ggcctcgtcg
      721 aacaggtcct tgttgtagaa gatgaacgac ggatagaccg cgaagggcag gccgacggtc
      781 gagccgttct ggccgagcga gttgaagaag tcgaccagcg actggtccac gccggtcgcc
      841 ttgtagcccg tcgagtcgac gagcggcttg aggtcgagca gctggtcctg gaacaggttg
      901 agtccctcga ccccgaccgg tccgatgatg tccggcgcgt tgcccgccgc gatctcggtc
      961 ttgaggatgt tcgaggcctg cgtgttgtcg acgatctcgt actggatgta cacgtccttc
     1021 tgcgagttgt tgaaggccgt gatgaatgcc tgctcgggcc cgatctgggc gggctgggtg
     1081 ccggcgccga ggccgatgaa ccagcgaacg acggtgccgc cgttggggcc gggaccggcg
     1141 gcgatgggcg caggggtgat gttgacgagt gacggcgagg gcgcctcggt cgccgcggcc
     1201 gcggatggtg cctcgctggc cgccgcgctc ggcgccgtcg acgtggtcga gctgccacat
     1261 gccgaggcga tgatcgcgac gaccccgagc aggccgatga agcccttcgg gacggatctt
     1321 cgtgcgttca tggtctgtac gggtcctcca ctacgagatc tggtcgatct ccacctcatc
     1381 tgaggtcatc agctggggca ccgacccagg gtgggccgaa gccgccggtc gccggccggc
     1441 tcagggcgcg ggcctcccgg cgctcgaggc gcgcttcacc aggtcggtgg ccaggatcac
     1501 gcgccgtatg acccggtccg tgccttcgac cgcttccacg agcaggcgtg cgacctcgcg
     1561 tcccatctcc tcgatcggct gatggacgct ggtgagttgc gggttggttg aggtcgcgac
     1621 cggcgagtcg tcgtacccga cgagcgccac gtcctttggc acgcggcgtc cggtcgcggc
     1681 gagcacggac agcgccccga cggccatcag gtccgaggcg gcaaagaccg cgtcgatgtc
     1741 cggccgggcc gccagcaacc gggtcatcgc ctcggcgccg ccggcctgtg tgaagtcgcc
     1801 cttggcctcg agccgcggat cggcctcgag gccggcctcg gcgacggcct cgcgatagcc
     1861 ggcgagccgg tccatgccgg ccggcatgtc cgacggaccg gtgatcgtcg caatcacccg
     1921 ccgcccgccg gcgatcaggt gctcgacggc gctccgcgcg ccctggcggt tgtcgacgtc
     1981 gacgtagctc gccgagatgc cgcgcggcgg gcggccaacg agcacgagcg ggat
//
LOCUS       DATDDI010000789         1671 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_141864, whole genome shotgun sequence.
ACCESSION   DATDDI010000789 DATDDI010000000
VERSION     DATDDI010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141864"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            339..>1671
                     /locus_tag="VIU37_11515"
     CDS             339..>1671
                     /locus_tag="VIU37_11515"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY6014633.1"
                     /translation="MEAVRSPRFAPEPAFPSELEDFTAGLHGSVVLPGDAEYDEARQV
                     HSAQYDRRPAAIVRAADVDDVVHTVRFAREARLPFSVRGGRHSLAGFGVNDGGIVLDL
                     GAMKGLHIDPVARTAWAQPGLTAGEYTIAAAAHGLATPFGDTASVGIGGLTLGGGIGW
                     LVRKYGMTIDSLLAVEVVTADGRVLTASPESHPDLFWAVRGGGGNFGVVTRFQFRLHP
                     VGTILGGALFLPATPEVLRNLVPTAQAAPEELTTITMVMRIPPMPFVPAEQVGRLSAI
                     VMFVWAGEPGDGQAALDPFRRLGTPLAEAVMPMPYPGIYQMLAEAEKRAYGTHRSRFL
                     ERIDDAAVEAILDAMAAPSSPMAMIQIRVLGGATARVPADATAFAHRDAPVMLLVITP
                     YEDPSTEPVHVAWTVALHDALAANDAGVYSNFLEVEGDARIRAAYPNGAYER"
BASE COUNT          228 a          625 c          572 g          246 t
ORIGIN      
        1 agccgctggc cgccgctcga ccgctcgaga tgcagtcgcc cgtcgtgctc ccaccgccgg
       61 atggtgtcga cggtcacgcc gagcatctcg gcggcctggc cgacccgtag ggcattggac
      121 ggcatctcta tgtcctcacg ctatcccaag tgctcatccc tgtgtatgac cgagatgata
      181 gcgggctttg cccgaccggc aacggcgcga gccacgagcc gtccgattgg acggatgtcc
      241 atgcccggga cacgaccgac gccgggtgcg ccgggcgcat gccgcccgcg accatcgggc
      301 caatcgatcc accctcccca acctccgagg agccccgcat ggaagccgtc cgcagtcccc
      361 gcttcgcgcc cgaaccggcg ttcccgtccg agctggagga cttcacagcc gggctgcacg
      421 gatcggtcgt gctgccgggc gacgccgagt acgacgaggc ccgccaggtc cacagcgcgc
      481 agtacgaccg acgtccagcg gccatcgttc gagcggccga tgtcgacgac gtggtccata
      541 cggtgcggtt cgcccgggag gcgcgcctgc ccttctcggt ccgcggcggg cggcacagcc
      601 tggccgggtt cggcgtgaac gacggcggaa tcgtgctcga cctcggcgcg atgaagggtc
      661 tccacatcga tccggtcgcc cggacggcct gggcgcagcc cggcctgacc gccggggaat
      721 acacgatcgc ggctgccgcc cacgggctgg cgaccccgtt cggcgacacg gcctcggtcg
      781 ggatcggcgg gctgaccctc ggcggcggga tcggctggct cgtccgcaag tacggcatga
      841 ccatcgattc gctgctcgcc gtggaggtcg tgacggccga cggccgcgtg ctgacggcca
      901 gccccgaatc gcatcccgat ctgttctggg cggttcgcgg cggcggcggc aacttcggcg
      961 tcgtcacgcg cttccagttc cgcctccatc cggtcgggac catcctcggc ggggcgctgt
     1021 tcctcccggc gaccccggag gtgctgcgca acctcgttcc gacggcccag gccgcgccgg
     1081 aggagctgac gacgatcacg atggtcatgc ggatcccgcc gatgcccttc gtgccggcgg
     1141 agcaggtcgg caggctgtcg gcgatcgtca tgttcgtctg ggccggcgag ccgggcgatg
     1201 gccaggccgc cctcgatccg ttccgccgcc tggggacgcc gctcgccgag gcggtcatgc
     1261 cgatgccgta cccgggcatc taccagatgc tggcggaggc cgagaagcgc gcctacggca
     1321 cgcatcgctc ccgcttcctc gagcggatcg acgacgccgc cgtggaggcc atcctcgacg
     1381 cgatggccgc gcccagctcc ccgatggcca tgatccagat ccgggtcctc ggtggcgcga
     1441 cggcccgggt gccggccgac gccacggcct tcgcccaccg cgacgcgccg gtgatgctcc
     1501 tcgtcatcac gccttacgag gatccgtcga ccgaacccgt gcacgtcgcg tggaccgtgg
     1561 cgctccacga tgccctcgcc gccaacgacg caggcgtcta ttcgaacttc ctcgaggtcg
     1621 agggcgacgc ccggatccgg gcggcctacc cgaacggcgc gtacgagcgc c
//
LOCUS       DATDDI010000790         1789 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_599655, whole genome shotgun sequence.
ACCESSION   DATDDI010000790 DATDDI010000000
VERSION     DATDDI010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_599655"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..179)
                     /locus_tag="VIU37_11520"
     CDS             complement(66..179)
                     /locus_tag="VIU37_11520"
                     /inference="COORDINATES: protein motif:HMM:NF013561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HEY6014634.1"
                     /translation="MPPAWKRWLDEAARVRATTVSEIIRQLIRELMIQRPR"
     gene            324..470
                     /locus_tag="VIU37_11525"
     CDS             324..470
                     /locus_tag="VIU37_11525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014635.1"
                     /translation="MIATPVFQVTASVVIALFVLQVLRRVTANRANPLVTGVNGGLNF
                     LFSG"
     gene            484..1674
                     /locus_tag="VIU37_11530"
     CDS             484..1674
                     /locus_tag="VIU37_11530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014636.1"
                     /translation="MPGPQLSFRASSHEYIEKFYTTAATTISTASQDVSPSQNSVQSY
                     GFLRRIKIRLRNNSAADSGNFNADYPQKILSAIQLTDPNGAEIYGGPTWSGYEAFLAE
                     KYGTYKTVNDPNLSQLSSTSATTPLYLWTIPLELAESSGYGSLPNFDAQSPYKLKLTL
                     DTIAHAYLTAPTTNPSFLFDGIIECWTLPDAVNKLTGYAQSQFPPGIGPMPGMTGVGC
                     TVQHWTKSNPSITAASAVSASMIRKGNTYRNLVAVVRNSSAARIALTNFPNPITFALD
                     GAPLWNNIDPAVILENWFRRETGQAGSTNVTADTGVLPIIFGAVDAANIAGVDGTLGS
                     QGWLGNNQASRIELSGTWGATASALDILTNDVNGVSLEGSAYAFAFGQQLAAASQPSV
                     RSGG"
BASE COUNT          289 a          677 c          545 g          278 t
ORIGIN      
        1 ctcgatcagc ttcagccggc ggcggtcgtt cgcgcggtag ccgacgacga cgcggccgag
       61 cccgctcatc gcggcctctg gatcatcagc tcgcggatca gctgccggat gatctcggag
      121 acggtcgtcg cccgcacccg cgccgcctcg tcgagccagc gcttccaggc cggcggcacc
      181 ttgaaacgaa tcgtgaccca cgtaccgtct ccgcggtggg tctccggtag ggcgtccgtg
      241 ggttccggca tatggcttgc ttataccacg gcatagccac gggcgcaatc cttgagggtg
      301 atgatctccg acagggagca gacgtgatcg caaccccggt cttccaggtc accgcctcgg
      361 tggtgatcgc cctgttcgtc ctccaggtgc tccgccgcgt caccgccaac cgggcgaacc
      421 cgctcgtcac cggcgtcaac ggcgggctca acttcctctt cagcggctag aaggagctcg
      481 cagatgcccg gacctcagtt gtccttccgc gcctcgtcgc acgagtacat cgagaagttc
      541 tacacgacgg cggcgaccac gatctcgacc gcgtcgcagg acgtctcgcc gtcgcagaac
      601 tcggtccagt cgtacgggtt cctgcgccgg atcaagatcc gcctgcgcaa caactcggcc
      661 gccgactccg gcaacttcaa cgccgactac ccgcagaaga tcctctcggc gatccagctg
      721 accgacccga acggcgccga gatctacggc ggcccgacct ggtccggcta cgaggccttc
      781 ctggccgaga agtacggcac ctacaagacg gtcaacgacc cgaacctctc gcagctctcg
      841 tccacctcgg cgacgacgcc gctctacctc tggacgatcc cgctcgagct ggccgagtcg
      901 tccggctacg gctcgctgcc gaacttcgac gcgcagtcgc cgtacaagct gaagctgacg
      961 ctcgacacga tcgcgcacgc ctacctgacg gcgccgacca cgaacccgtc cttcctcttc
     1021 gacgggatca tcgagtgctg gacgctgccg gacgccgtca acaagctgac cggctacgcg
     1081 cagtcgcagt tcccgcccgg gatcgggccg atgcccggca tgaccggcgt cggctgcacc
     1141 gtccagcact ggacgaagtc gaacccttcg atcaccgccg cctcggccgt ctcggcgagc
     1201 atgatccgca agggcaacac ctaccgcaac ctggtcgcgg tcgtccgcaa ctcgtcggcg
     1261 gcgcggatcg cgctaacgaa cttccccaac ccgatcacgt tcgcgctcga cggggcgccg
     1321 ctctggaaca acatcgaccc ggcggtgatc ctcgaaaact ggttccggcg cgagaccggc
     1381 caggccggct cgaccaacgt caccgccgat acgggggtgc tgccgatcat cttcggcgcg
     1441 gtcgacgcgg ccaacatcgc cggcgtcgac gggacgctcg gctcgcaggg ctggctcggc
     1501 aacaaccagg cctcgcggat cgagctctcc ggcacctggg gcgcgaccgc ctcggccctc
     1561 gacatcctga ccaacgacgt caacggcgtc agcctcgagg gctccgccta tgcgttcgcg
     1621 ttcggtcagc agctggccgc ggcctcgcag ccgtcggtcc gctcgggagg ctgatcgacg
     1681 atggccggct ccccgttcac cgccgaaggg atggcctcct acgggccgtc cctgaacacc
     1741 gccccctcgg ccggctccgg gatcggcgcc gccttcgggg cgcagcccc
//
LOCUS       DATDDI010000791         1591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_266807, whole genome shotgun sequence.
ACCESSION   DATDDI010000791 DATDDI010000000
VERSION     DATDDI010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266807"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..541)
                     /locus_tag="VIU37_11535"
     CDS             complement(<1..541)
                     /locus_tag="VIU37_11535"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014637.1"
                     /translation="MDRVAGECLMARKKRPSAGQTIGGILAGFDQQIWRTTPPAHELV
                     AKGKRLAPVPAEGGGMMTVGFDGDGDTAAAAGAASDPAAELHLDAPGAHAVVDLVRGG
                     RLASLVIDGRELLVTDGVGRMAWGSFPMAPFAGRVRDGRFTFRDKSYQLPIELPPHAI
                     HGTVMDRSWHRLEPRTIGTE"
     gene            complement(655..>1591)
                     /locus_tag="VIU37_11540"
     CDS             complement(655..>1591)
                     /locus_tag="VIU37_11540"
                     /inference="COORDINATES: protein motif:HMM:NF023958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014638.1"
                     /translation="GGDGLTLAPKLFESILRGLREIPHIEIIRIGSRVPVFLPQRIDD
                     ELCEVLEKYHPLWINLHFNHPNEITPEVSRAVDKLAKAGLPIGNQSVLLAGVNDCVHI
                     QRALVHKLVANRIRPYYLYQCDLVEGSGHFRTPVGKGLEIMEGLRGHTSGYAVPTYVI
                     DAPGGGGKIPVMPNYLISYSDHKVVLRNYEGYITTYEEPPSYQAHDKTACAYCQHERP
                     EPGQTGVLGLLEGERMWIEPQDFRETHARGNTEAHRLQDPSKWVPFGVGAIEGSSGGG
                     LRVLEPGAEPPEYGPGEEPRPREGEPTGSAHGELL"
BASE COUNT          212 a          560 c          575 g          244 t
ORIGIN      
        1 gctcggtgcc gatcgtccgc ggctcgagcc ggtgccacga gcggtccatg accgtgccgt
       61 ggatggcgtg cggcggcagc tcgatcggga gctggtagga cttgtcccgg aacgtgaacc
      121 tgccgtcgcg gacccggccg gcaaacggcg ccatcgggaa cgagccccag gccatccggc
      181 ccacaccgtc ggtcacgagg agctcgcgac cgtcgatcac gagcgaggcg agccgcccgc
      241 cgcgaacgag atcgacgacc gcgtgggcgc ccggggcatc gagatggagc tcggcggcgg
      301 ggtcgctcgc ggccccggca gccgccgcgg tgtcgccgtc gccgtcgaac ccgaccgtca
      361 tcatgccgcc accctcggcc gggaccggcg cgagccgctt ccccttggcc accagctcat
      421 gggcgggcgg cgtcgtccgc cagatctgct gatcgaatcc ggcgaggatg ccgccgatcg
      481 tctgccccgc ggacggccgc ttcttcctgg ccatcaggca ctcgccggcg acgcgatcca
      541 cgtcgaggtg tgccgtcgga aggccggttg ccgcatgccg ggagcgtagc ggacgcgccg
      601 gtcgcgcgtc cgggccgaca ggcgaaacgc gacggcggcg ccgtgagcga gcgcctagag
      661 cagctctccg tgggccgacc ccgtcggctc gccctcgcgc ggcctgggct cctcgcccgg
      721 tccgtactcg ggcggctccg cgccgggttc gaggacccgc agtcccccgc ccgagctccc
      781 ctcgatcgcc ccgaccccga acgggaccca tttcgacggg tcctggagcc ggtgcgcctc
      841 cgtattgccg cgggcatgcg tctcgcggaa gtcctgcggc tcgatccaca tccgctcgcc
      901 ctcgaggagc ccgagcacgc cggtctggcc gggctccggg cgctcgtgct ggcagtaggc
      961 gcaggccgtc ttgtcgtgag cctggtagct gggcggctcc tcgtacgtgg tgatgtagcc
     1021 ctcgtagttg cgcagcacca ccttgtggtc cgagtagctg atcaggtaat tgggcatgac
     1081 cgggatcttg ccgccgccgc ccggcgcgtc gatgacgtac gtgggcaccg cgtacccgga
     1141 ggtgtggcca cgaagcccct ccatgatctc gaggcccttg ccgaccgggg tccggaagtg
     1201 gcccgagccc tcgacgaggt cgcactggta gaggtagtac ggccggatcc ggttggcgac
     1261 cagcttgtgg accagcgctc gctggatgtg cacgcagtcg ttgacgccgg cgagcagcac
     1321 gctctggttg ccgatcggca ggcccgcctt cgcgagcttg tcgacggctc ggctgacctc
     1381 gggcgtgatc tcgttcgggt ggttgaagtg gaggttgatc cagagcgggt ggtacttctc
     1441 gaggacctca cacagctcgt cgtcgatccg ctgcggcagg aagacgggca cccgcgagcc
     1501 gatccggatg atctcgatgt gcgggatctc gcggagcccg cggaggatcg actcgaacag
     1561 cttgggggcg agggtcagcc cgtcgccgcc g
//
LOCUS       DATDDI010000792         2014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_100148, whole genome shotgun sequence.
ACCESSION   DATDDI010000792 DATDDI010000000
VERSION     DATDDI010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100148"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..577
                     /locus_tag="VIU37_11545"
     CDS             <1..577
                     /locus_tag="VIU37_11545"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HEY6014639.1"
                     /translation="AARAAGTQVGGFHPLVAFADTERAVAALHGATVAIEGDDELAAL
                     LARMAEAIGATAVRLAPGSKAAYHAAAMLSAGGFVALLDAIAELGRVAGLDETGAVAI
                     YGGLVEQTLGNARALGIARALTGPMVRGDVGTIRRHLEVLTREAPDVLPLYRAIAERE
                     VAIAESRGVLAPEAAADIRHAVAMPDRTGTM"
     gene            582..896
                     /locus_tag="VIU37_11550"
     CDS             582..896
                     /locus_tag="VIU37_11550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014640.1"
                     /translation="MEHSLAARFATRPAARFPKASPASPRPRLGLRSGHTFQPATARL
                     TILRRADPAPAVRLRRDPRSITATRPARSSHGLPRPVVSPTWSRSVFVRRASAPVAPW
                     RG"
     gene            884..1351
                     /locus_tag="VIU37_11555"
     CDS             884..1351
                     /locus_tag="VIU37_11555"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY6014641.1"
                     /translation="MARLRTAAAISAGGIVVRAERDGRSLVVGMRRRDRDTVTWTLPK
                     GTPDDGETIEQTAVREVTEETGLQVRIVEPLPSIDYTFVQAGTRIHKTVHYFLMEPLG
                     GDLSRHDHEFERVRWVRFADAPGLLTFQTERALVAAAAARLEATEPGVGEEPS"
     gene            1348..>2014
                     /locus_tag="VIU37_11560"
     CDS             1348..>2014
                     /locus_tag="VIU37_11560"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014642.1"
                     /translation="MTDHLEPPRETALVDVHRALGARLIDFAGWLMPVQYAGILEEHR
                     AVRERAGLFDLSHMGELFVEGDDAGDALAAALVTDPRTLAVGRAHYSMICAPDGGIID
                     DLIVYRLGSERFLVVANAGNAAVVSDELAARLAGWKAVLDDRSLATSLVAIQGPRAAG
                     ILGPLTDVDLGSLKYYAIAEGQVAGIPALVARTGYTGEDGFELFVDWARGPAAWQVLA
                     EAGR"
BASE COUNT          249 a          771 c          727 g          267 t
ORIGIN      
        1 ggccgcccgc gcggccggca cccaggtcgg cggcttccac ccgctggtcg ccttcgcgga
       61 caccgagcgc gcggtcgccg cgctccacgg cgcaacggtc gcgatcgagg gcgacgacga
      121 gctcgccgcc ctgctggcga ggatggcgga ggccatcggc gcgacggcgg tccggctggc
      181 gcccggcagc aaggctgcct atcacgcggc ggcgatgctc tccgccggtg gcttcgtggc
      241 gctgctcgac gcgatcgccg agctcggccg cgtggcgggc ctcgacgaga ccggcgccgt
      301 cgcgatctac ggcgggctcg tcgagcagac gctcggcaac gcccgggccc tgggcatcgc
      361 ccgagccctg accgggccga tggtccgtgg cgacgtcggg acgatccggc gccatctgga
      421 ggtgctcacg cgcgaggcac ccgatgtcct gccgctgtac cgggcgatcg ccgagcgcga
      481 ggtcgcgatc gccgaatcgc gcggcgtgct ggcaccggaa gcggccgccg acatccgaca
      541 cgcggttgcg atgccggacc gaaccggtac catgtgaatc gatggagcac agcctcgctg
      601 cccgcttcgc gacccgcccg gcagcacgat ttcccaaggc gtccccggcc tcgccgcgcc
      661 cgcggctcgg gctgcggtcc ggccacacgt tccagccggc caccgcgcgg ctgaccatcc
      721 tccgacgggc cgatccggcg cccgcggtcc gactccgccg cgacccgcgc tccatcaccg
      781 cgacccgccc cgcccgatcg tcccacggcc tgccgcgccc ggtggtctcg cccacctggt
      841 cgcgctccgt gttcgtgcgc cgcgcgagcg cccccgtggc gccgtggcgc ggctgaggac
      901 cgcggccgca atctccgcag gcgggatcgt cgtccgggcc gagcgggacg gccgctcgct
      961 cgtcgtcggc atgcggcgtc gcgatcgcga caccgtcacc tggacgctgc cgaagggcac
     1021 gcccgatgac ggcgagacga tcgagcagac ggccgtccgc gaggtgaccg aggagaccgg
     1081 cctccaggtg cgcatcgtcg agccgctgcc gtcgatcgac tacaccttcg tccaggcggg
     1141 cacccggatc cacaagaccg ttcactattt cctcatggag ccgctcggcg gggacctgtc
     1201 gcgccacgac cacgagttcg agcgggtgcg ctgggtccgc ttcgccgacg cgccggggct
     1261 cctgacattc cagaccgagc gcgccctcgt ggcggccgca gccgcccggc tcgaggcgac
     1321 ggagcccggg gtgggggagg agccgtcatg accgatcacc tcgagccgcc cagggagacc
     1381 gccctggtcg acgtccaccg cgccctcggt gcgcgcctca tcgacttcgc cggctggctg
     1441 atgccggtcc agtacgccgg catcctcgag gagcaccgcg cggtccggga acgggccggg
     1501 ctgttcgacc tgtcgcacat gggcgagctg ttcgtcgagg gcgacgacgc tggcgacgcg
     1561 ctcgccgcgg ccctcgtcac cgatccccgg accctggccg tgggtcgggc ccactactcg
     1621 atgatctgcg cgcctgacgg cgggatcatc gacgacctca tcgtctaccg gctcgggtcg
     1681 gagcggttcc tcgtcgtcgc caacgccggc aacgcggcgg tcgtgtccga cgagctcgcg
     1741 gcccggctcg cgggctggaa ggcggtcctc gacgaccgct cgctggcgac ctcgctggtc
     1801 gcgatccagg gcccgcgggc agccggaatc ctcgggccgc tcacggacgt ggatctcggg
     1861 tcgctgaagt actacgcgat cgccgagggc caggtcgcgg gcatccccgc gcttgtggcc
     1921 cggaccggct acaccggcga ggacggcttc gagctgttcg tcgactgggc caggggcccg
     1981 gccgcatggc aggtccttgc cgaggcgggc cgga
//
LOCUS       DATDDI010000793         1645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_100183, whole genome shotgun sequence.
ACCESSION   DATDDI010000793 DATDDI010000000
VERSION     DATDDI010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100183"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1091)
                     /locus_tag="VIU37_11565"
     CDS             complement(<1..1091)
                     /locus_tag="VIU37_11565"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY6014643.1"
                     /translation="MRLASRMELIGTETAFEAAARARALEATGREVIHLEIGEPDFDT
                     PANVREAAKRALDSGATHYAPFPGIPDLRAAIAEDFSARRGMAVAPDSVFVTVGGKGV
                     MYYAIMALVEPGDEVIVPDPGYPIYASVTKFVGGTVVPISIRQENDFRLDIDELIGLV
                     TPRTKLIVLNSPANPTGGVLTREDLERIAAIAVERDLAVLSDEIYSRILYEGEHVSIA
                     TLPGMAERTIVLDGFSKTYAMTGWRLGYAIVPEWLAFAFGRLIINSVSSATTFAQVGA
                     VEALRGPQDAVDAMVEEFHARRDLVVDGLNSLPGITCLRPKGAFYVFPDVSGTGRTGD
                     ELAHLLLNEAGVSVLSGTAFGDVGRNHIRL"
     gene            complement(1231..>1645)
                     /locus_tag="VIU37_11570"
     CDS             complement(1231..>1645)
                     /locus_tag="VIU37_11570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein"
                     /protein_id="HEY6014644.1"
                     /translation="VRDFNVKTPGLETPVRNLSGGNIQKLILARELSRRPRVLIAAQP
                     TRGVDIGATEYIHERLLEQRDAGTAILLISEDLDEIQELSDEIAVMYEGRIVGIVARG
                     TATPEALGLLMAGVAPTEGRAGTGASSAETRAATA"
BASE COUNT          247 a          552 c          584 g          262 t
ORIGIN      
        1 agccggatgt ggttccggcc gacgtcgccg aaggcggtcc cggacaggac cgacacgccg
       61 gcctcgttga gcagcaggtg cgccagctcg tcgccggtgc ggccggtgcc cgacacgtcg
      121 gggaagacgt agaaggcgcc cttcggtcgc aggcaggtga tgcccggcaa ggagttgagg
      181 ccgtcgacca cgaggtcgcg cctcgcgtgg aactcctcga ccatcgcgtc gaccgcgtcc
      241 tgcggaccgc gcagcgcctc gaccgcgccg acctgggcga acgtcgtcgc cgagctgacc
      301 gagttgatga tcaggcgccc gaaggcgaag gccagccatt ccgggacgat cgcgtagccg
      361 agccgccagc cggtcatcgc ataggtcttc gagaagccgt cgaggacgat cgtccgttcg
      421 gccatcccgg gcagcgtcgc gatcgagacg tgctcgccct cgtacaggat ccggctgtag
      481 atctcgtcgg acaggaccgc caggtcgcgc tcgacggcga tcgcggcgat ccgctcgagg
      541 tcctcgcggg tgaggacgcc accggtcggg ttggcggggg agttgaggac gatcagcttg
      601 gtgcggggcg tgaccagccc gatcagctcg tcgatgtcga gccggaagtc attctcctgg
      661 cggatcgaga tcgggacgac ggtgccgccg acgaacttcg tgacgctcgc gtagatcggg
      721 tagccggggt cggggacgat cacctcgtcg cccggctcga ccagggccat gatcgcgtag
      781 tacatgacgc ccttgccgcc gacggtcacg aacacgctgt ccggggcgac ggccatgccg
      841 cggcgggccg agaagtcctc ggcgatggcg gcgcgtaggt cggggatgcc cgggaacggg
      901 gcgtagtggg tggcgccgct gtcgagggca cgcttggccg cctcgcggac gttggccggc
      961 gtgtcgaagt cgggctcgcc gatctcgagg tggatcacct cgcggccggt cgcctcgagc
     1021 gcccgggcgc gtgccgcggc ctcgaaggcc gtctcggttc cgatcagttc cattcgtgac
     1081 gcgagccgca tcgaattgct ccttcccatc ggttgcaccg tccccgggcg ctcgtcccac
     1141 ccgagcgggc gccatagaag ggacagtgtc ccatccagat caattacgtc aaacgaattg
     1201 ttctacgaag atgcattagc caacctacat tcaggcggtc gccgcgcgag tctcggccga
     1261 cgaggccccg gtgcccgctc gaccctcggt cggggcgaca ccggccatca gcaggcccag
     1321 ggcctccggc gtggcggtcc cgcgggccac gatccccacg atccgccctt cgtacatgac
     1381 cgcgatctcg tcggatagct cctggatctc gtcgaggtcc tcggagatca gcaggatcgc
     1441 cgtgcccgcg tcccgttgct cgagcaggcg ttcgtgaatg tactcggtcg cgccgatgtc
     1501 gacgccccgg gtcggctggg ccgcgatcag gacccggggc cggcgcgaca gttcgcgcgc
     1561 caggatcagc ttctggatgt tcccgcctga aaggttgcgg acgggggttt ccaggccggg
     1621 cgtcttcacg ttgaagtcgc gcacc
//
LOCUS       DATDDI010000794         3043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_641337, whole genome shotgun sequence.
ACCESSION   DATDDI010000794 DATDDI010000000
VERSION     DATDDI010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641337"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..617)
                     /locus_tag="VIU37_11575"
     CDS             complement(<1..617)
                     /locus_tag="VIU37_11575"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY6014645.1"
                     /translation="MHRILGGVMATPAVMDELEGARIVDFPLRGEWTAVQTPASRIPS
                     HGTDMLGQRYAFDFVRFDPANHARYHPAGALRTLLIGVPTHECFGWGEPIHAPLDGTV
                     VAARDGLEERGRTHPLRELALAVKNGLTFRPTQGHLHRVMGNFVILECGDVHAGFAHL
                     TTGSVAVEAGRQVRLGDVLGRVGHTGNSTAPHLHFQLMDGPDPLTA"
     gene            848..1111
                     /locus_tag="VIU37_11580"
     CDS             848..1111
                     /locus_tag="VIU37_11580"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY6014646.1"
                     /translation="MRVFHKAMADVNRLRIVRRLVAGDATVTELTDHVGLSQPLVSWH
                     VGRLRAAGVVETRRNGRETVCRLRGEAFAEFAARERAILGFAG"
     gene            1108..1797
                     /locus_tag="VIU37_11585"
     CDS             1108..1797
                     /locus_tag="VIU37_11585"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEY6014647.1"
                     /translation="MTVTISNDSRARIKKAFEPIALGMGRLGLTPDALTLIGFAITVI
                     GAVLVAGQLWLAAGLVILFGGVFDMFDGTLARATGKVSNLGAFYDSVFDRAGEVIVYV
                     GLVIGLQELGILNGTVLAAAAMGSAVLVSYTRSRSEGLGFTSGSGMAAVGIMTREVRL
                     IILSAGLVLAGLLGTAPDNGSCATCAGGAAFQPGAGVLFLALGIIAVGSILTTIQRIL
                     HVRRQARRQST"
     gene            1822..2967
                     /locus_tag="VIU37_11590"
     CDS             1822..2967
                     /locus_tag="VIU37_11590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018287644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEY6014648.1"
                     /translation="MSKNGNGKNGSTPGNTWAGSGRRGDGKIRVAIVGVGNCASSLVQ
                     GRYYYENAKEDDFVPGLMHVNLGGYHIRDIEFVAAFDIDKNKVGKDLSEAIYTKPNNT
                     YVFQQVPHTGVTVERGMTHDGLGKYLSQIIEKAPGPTADIVGILKEREVDVMVSYLPV
                     GSEEATKWYVEQALTAGVAFINAIPVFIGREPYWQRRFAEAGLPVIGDDIKSQVGATI
                     THRVLTRLFMDRGVRLDRTYQLNFGGNTDFLNMLERERLESKKISKTNAVTSMLDYEI
                     DTDDIHVGPSDHVPWLLDRKWCYIRMEGTTYGDVPLNLELKLEVWDSPNSAGVVIDAV
                     RCAKIGLDQGLKGALMAPSSYFKKSPPVQFRDEEAREMVEEFARPSE"
BASE COUNT          497 a         1065 c         1024 g          457 t
ORIGIN      
        1 gcggtcagcg ggtcggggcc gtccatgagc tggaaatgga ggtggggagc cgtcgagttg
       61 cccgtgtgcc cgacccgtcc gagcacgtcg ccgagccgca cctgccggcc ggcctcgacc
      121 gccaccgagc cggtcgtcag atgggcaaac ccggcgtgga cgtcgccgca ctcgaggatg
      181 acgaagttgc ccatgacgcg gtgcaggtga ccttgggtcg ggcgaaacgt caggccgttc
      241 ttgacggcga gcgcgagctc ccggaggggg tgagttcggc cgcgctcttc gagcccgtcg
      301 cgagcggcca cgacggtccc gtcgagcggg gcgtggatcg gctcacccca gccaaagcac
      361 tcatgcgtgg gaacgccgat gagcagcgtc cgcagggcac cggccgggtg gtagcgagca
      421 tggttcgcgg gatcgaaccg gacgaagtcg aacgcgtagc gctggcccag catgtccgtg
      481 ccgtggctcg ggatccggct cgccggcgtc tgcacggccg tccactcgcc gcgcagcggg
      541 aagtccacga tccgggcacc ctcaagctcg tccatcaccg ccggcgtcgc catgacgccc
      601 cccagtatgc gatgcatccg acggtcatcg ccgccgtcgg gtccagggcc gcctcgagcc
      661 gttgcccgga gcagcgacgc ttgacatcgg catcaccgcg ggcctagcat caaccgcggt
      721 tgatataaac cgtggttgat gcaacgtacg gccacggtcc cagcggagtc ccccactgtc
      781 cccctcgaga gcccgcgtcc ggagcaccat cgccgcggcc atcgcgccgc ccgaggacct
      841 gcgccaattg cgcgtcttcc acaaggccat ggcggacgtc aaccggctgc ggatcgtgcg
      901 acgcctggtg gccggtgacg cgaccgtcac cgagctgacc gaccacgtcg gcctgtcgca
      961 acccctggtc tcgtggcatg taggtcggct ccgcgcggcc ggcgtggtgg agacccgccg
     1021 gaacggtcgc gagacggtct gccggctgcg cggcgaggca ttcgccgagt tcgccgctcg
     1081 cgagcgggcg atcctcgggt tcgccggatg accgtgacga tctccaacga ttcccgggcg
     1141 cggatcaaga aggcgttcga gccgatcgcc ctcgggatgg gccggctcgg gctcacgccc
     1201 gacgcgctca ccttgatcgg gttcgcgatc acggtcatcg gcgccgtcct cgtcgccggg
     1261 cagctgtggc tggccgccgg cctcgtcatc ctgttcggcg gcgtcttcga catgttcgac
     1321 ggcacgctcg cccgcgcgac cggcaaggtc agcaacctcg gcgccttcta cgactcggtc
     1381 ttcgaccggg cgggcgaggt gatcgtctac gtcggcctgg tcatcgggct gcaggagctc
     1441 ggcatcctca acgggaccgt cctcgccgcg gcggccatgg gctccgcggt gctggtcagc
     1501 tacacccgtt cgagatccga gggtctcggg ttcacgtccg gcagcggcat ggccgccgtt
     1561 gggatcatga cgcgcgaagt ccgcctgatc atcctcagcg ccggcctcgt cctggctggc
     1621 ctgctcggca cggcccccga caacgggtcg tgcgccacat gcgccggtgg tgccgcgttc
     1681 caaccgggcg ccggcgtcct cttcctcgcc ctcgggatca tcgccgtggg ctccatcctc
     1741 accaccatcc agcggatcct ccacgtccgc cggcaagcca gacgacaatc cacctagccc
     1801 caaggagcac ggagaacgaa cgtgagcaag aacggcaacg gcaagaacgg ctcgaccccc
     1861 ggcaacacct gggccggttc ggggcgtcgc ggcgacggca agatccgcgt cgcgatcgtc
     1921 ggcgtgggca actgcgcgag cagcctcgtc cagggccgct actactacga gaacgccaag
     1981 gaggatgact tcgtccccgg gctgatgcac gtcaacctgg gcgggtacca cattcgcgac
     2041 atcgagttcg tggcggcgtt cgacatcgac aagaacaagg tcggcaagga cctgtccgag
     2101 gcgatctaca ccaagccgaa caacacctac gtcttccagc aggtcccgca caccggcgtc
     2161 accgtcgagc gcggcatgac ccacgacggc ctgggcaagt acctcagcca gatcatcgag
     2221 aaggcgcccg gccccacggc cgacatcgtg gggatcctca aggagcgcga agtcgacgtg
     2281 atggtgtcgt acctgccggt cggctcggaa gaggcgacca agtggtacgt ggagcaggcg
     2341 ctgaccgccg gcgtcgcgtt catcaacgcc atcccggtgt tcatcggccg cgagccgtac
     2401 tggcagcggc gcttcgccga agccggcctg ccggtcatcg gtgatgacat caagagccag
     2461 gtcggggcga cgatcaccca ccgcgtgctg acccggctgt tcatggaccg cggcgtgcgc
     2521 ctggatcgga cgtaccagct caacttcggc ggcaacacgg acttcctgaa catgctcgag
     2581 cgcgagcggc tcgagtccaa gaagatcagc aagacgaacg ccgtgacctc gatgctcgat
     2641 tacgagatcg acacggacga catccacgtc gggccgagcg atcacgtgcc gtggctgctc
     2701 gaccggaagt ggtgctacat ccggatggaa ggcacgacct acggcgacgt gccgctcaac
     2761 ctcgagctca agctcgaggt gtgggactcg ccgaactccg ccggcgtcgt catcgacgcc
     2821 gtgcgctgcg ccaagatcgg gctcgaccag ggcctcaagg gcgcgctcat ggcgccgtcg
     2881 tcgtacttca agaagtcgcc gccggtgcag ttccgcgacg aagaggcccg cgagatggtc
     2941 gaggagttcg cccgcccgtc ggagtgatca gacgcccgcc ggttcgatcc cgcgctcgcg
     3001 tgcccaggcg gtgaggcgcg cgtacgcgtc ctcctcgctc atg
//
LOCUS       DATDDI010000795         1571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_662094, whole genome shotgun sequence.
ACCESSION   DATDDI010000795 DATDDI010000000
VERSION     DATDDI010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662094"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1418
                     /locus_tag="VIU37_11595"
     CDS             <1..1418
                     /locus_tag="VIU37_11595"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEY6014649.1"
                     /translation="YGWHTLRVEDGNDIEAISAAIDAAREDPRPSIVAVRTHIGFGSP
                     NRHDTQKAHGQPLGPDEVRLTKEAYGWDPDAHFLVPVEVRAAMGAFADRGDELVKAWE
                     ADFYRFRDAHPEAAAELRRRMLDLGQPAGWDSGLKTYAVGEELATRQASQAAIQALAA
                     TLPELFGGAADLSESNLTDIKGAGDFEAGEPGRNLRFGVREHAMGGVANGLAYHGGFI
                     PYAGTFLNFSDYMRGAVRLAALAGVHVIYVWTHDSVGLGEDGPTHQPVEHYAALRAIP
                     NLCFVRPGDANETSAAWAFAVARHEGPVALALTRQKLPVLPGTAERARDGVVRGGYVL
                     REATGGSPQLIMIGTGSELQLAYAAAETLDGEGIPTRVVSLPCWEQFEAQDQAYRDAV
                     LPPAVRKRVSVEIGVPLGWERWVGDEGAIVGLDHFGASAPAAVIFEHLGFTAGRVTDV
                     ARRVVRDGLRGRIPPLAGDYT"
BASE COUNT          216 a          579 c          564 g          212 t
ORIGIN      
        1 cctacggctg gcacaccctg cgggtagagg atggcaacga catcgaggcg atctcggcgg
       61 ccatcgacgc cgccagggag gacccgcggc catcgatcgt cgcggttcgg acgcacatcg
      121 ggttcggcag cccgaaccgg cacgacaccc agaaggcgca cggccagccg ctcggtccgg
      181 acgaggtccg cctgaccaag gaggcctacg gctgggaccc ggacgcccac ttcctcgtgc
      241 ccgtcgaggt ccgggccgcg atgggcgcct tcgccgaccg gggggacgaa ctcgtcaagg
      301 cctgggaggc cgacttctac cgcttccgcg acgcccaccc cgaggctgcc gcggagctcc
      361 gtcgccggat gctcgacctc gggcagccgg ccggctggga ttccgggctg aagacctacg
      421 ccgtcgggga ggagctcgcg actcgccagg ccagccaggc cgcgatccag gccctcgccg
      481 cgacgctccc ggagctgttc ggtggtgcgg cggacctgtc cgaatcgaac ctcaccgaca
      541 tcaagggcgc cggcgacttc gaggccggcg agcccggccg gaacctccgc ttcggcgtcc
      601 gcgagcacgc catgggtggg gtcgccaacg gcctcgctta ccacggcggc ttcatcccgt
      661 acgccgggac gttcctgaac ttcagcgact acatgcgcgg cgccgtgcgc ctggcggcgc
      721 tcgccggcgt ccacgtcatc tacgtctgga cccacgactc ggtcggcctc ggcgaggatg
      781 gacccacgca tcaaccggtc gagcactacg cggcgctgcg ggcgatcccg aacctgtgct
      841 tcgtccggcc cggcgacgcc aacgagacgt cggcggcgtg ggccttcgcc gtcgcgcggc
      901 acgaggggcc ggtggcgctc gccctgaccc ggcagaaact ccccgtcctg cccggcacgg
      961 ccgaacgggc gcgtgacggc gtcgtccgcg gtggctacgt gttgcgcgag gccaccggcg
     1021 gcagcccgca gctgatcatg atcggcacgg gctccgagct ccagctcgcc tacgcggccg
     1081 cggagacgct cgatggcgag ggcatcccga cccgggtcgt ctcgctcccg tgctgggagc
     1141 agttcgaggc gcaggaccag gcctatcgcg acgccgtcct gccgccggcc gtgcgcaagc
     1201 gggtgagcgt cgagatcggc gtcccgctcg gctgggagcg ctgggtcggc gacgagggcg
     1261 cgatcgtcgg gctcgaccat ttcggcgcct cggcgccggc ggcggtgatc ttcgagcatc
     1321 tcgggttcac cgccgggcgg gtcaccgacg tggcccggcg ggtggtccga gacgggctgc
     1381 ggggccggat cccgccgctc gccggcgact acacctgatc gtcgaggtca ctgcccgacg
     1441 agtggagccc ggcctctccg gccggcctct caggctactc tcaggttcga ccggtacaac
     1501 acggggcggg agggtgcgtc cgcgtccggc ccagtcccga ggtacacgat gtccccacga
     1561 aaccgagttc g
//
LOCUS       DATDDI010000796         1912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_662096, whole genome shotgun sequence.
ACCESSION   DATDDI010000796 DATDDI010000000
VERSION     DATDDI010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662096"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VIU37_11600"
     CDS             <1..534
                     /locus_tag="VIU37_11600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014650.1"
                     /translation="VHGDLAGVQERTPAEITGTDGKSYSAAKPVPQSAEAEPGVGRGE
                     PEPESPMVSLLGLGAEEEEAPADDDSPAPTGARLEEPKPAKEKPPVWQDDDPEVVEAH
                     RRRRVSKSFAEGVAYVWAALDPDPVAWLNRSWDPSANPFDGMASMSKVFSPDGLRRTA
                     EHLTALADHLDEKGETL"
     gene            531..1025
                     /locus_tag="VIU37_11605"
     CDS             531..1025
                     /locus_tag="VIU37_11605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014651.1"
                     /translation="MSQESRYRKIARECYERVMRGAKGRFDIEDVKDELRDEIAANGL
                     DADAIDFLVEDLIRREDEARGKAPRHVGQLDLLTEDEVASALDVVWKLDGGERVQAKY
                     ANRADHLRRLGVKKQNLDAVQDAYARDKREYDHLAPYYLDDTTTYADALAAWFADNSQ
                     EDTP"
     gene            1022..1675
                     /locus_tag="VIU37_11610"
     CDS             1022..1675
                     /locus_tag="VIU37_11610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014652.1"
                     /translation="MTGRFLLDFDALLQTAATEVGVPPVAAPTAVDDASIGRSSADGD
                     EGEPFTPDDSPAGDGPGAERPVPGNPQDSPTDRDPEAQPEPPVVATTGRSGDDTPAAA
                     VDQVALVAQQPGLDLPEARTPEGPVERNAPGVPSPSFEGSDNGDGLEEGRDLPARPSS
                     SDPTALVDVFAGWVEAVDDLDPQALGPLLTDEQLATLYGHVDDLAQFVGLLERWRTP"
BASE COUNT          348 a          681 c          634 g          249 t
ORIGIN      
        1 gtccacggcg acctcgcagg tgttcaagaa cgaacacctg ccgagatcac gggtaccgac
       61 ggcaagtcct actcggccgc gaagcccgtc ccgcagtcag ccgaggcgga gccgggcgtt
      121 ggccgcgggg agcccgagcc cgaatctccc atggtttccc tgctagggct gggcgcggag
      181 gaagaggagg cgccggccga cgacgacagc cctgcgccca ccggcgcccg cctcgaagag
      241 ccgaagccag ccaaggaaaa gccgcccgtt tggcaggacg acgaccccga agtcgtagag
      301 gcgcatcgcc gccggcgagt gtcgaagtcg ttcgcggagg gcgtggccta cgtctgggcc
      361 gcccttgacc cggatccggt cgcgtggctc aaccgctcct gggatccgtc cgcgaacccg
      421 ttcgatggca tggccagcat gtcgaaggtc ttttcccccg acggactccg acgcacggcc
      481 gagcacctga ctgcgctcgc cgaccacctc gacgagaagg gcgaaacgct gtgagccagg
      541 agtcccggta ccggaagatc gcccgagagt gctacgagcg ggtgatgcgc ggcgcgaagg
      601 gccgcttcga catcgaggat gtcaaggacg agcttcgcga cgagatcgcc gcaaacggcc
      661 tagacgccga cgcgatcgac ttcctcgtcg aggatctgat ccgacgtgag gacgaggcgc
      721 gggggaaggc gccacggcat gtcggccagc tcgatctgct gaccgaggac gaggtcgcgt
      781 cggcgctcga cgtcgtgtgg aagctcgacg gcggcgaacg cgtgcaggcc aagtacgcga
      841 accgagccga ccacctccgc cgactcggcg tgaagaagca gaaccttgac gccgtccagg
      901 acgcgtacgc gcgggacaag cgcgaatacg accacctggc gccgtactac ctcgacgaca
      961 ccaccacgta cgccgacgca ctggccgcgt ggttcgccga caactcgcag gaggacacgc
     1021 catgactggc cgcttcctgc tcgacttcga tgcacttctc cagactgcgg cgaccgaggt
     1081 aggggtgcct ccggtcgccg caccaacggc tgtcgacgac gcaagcattg gtcgatcgtc
     1141 ggcagatggc gacgagggcg agcctttcac gcccgatgac tcgccagccg gggacggacc
     1201 gggcgcagaa cggcccgtcc ccggtaaccc ccaagactcc ccgaccgatc gggaccctga
     1261 ggctcagcct gagccaccag tggtcgctac gaccggccgg tcgggagacg acaccccggc
     1321 tgctgccgtc gatcaagtcg cactagtcgc tcagcagccg gggcttgacc ttccggaggc
     1381 ccgcactccg gaagggccgg tcgagcgcaa cgctcccggt gttccgtcgc cgtccttcga
     1441 ggggtcggac aacggcgacg gcctggagga gggccgcgac ctccccgcaa ggccctcctc
     1501 cagtgacccc accgcgctcg tcgacgtgtt cgccggctgg gtcgaagccg tcgacgacct
     1561 ggacccgcag gcgctcgggc cactgctcac cgacgagcag ctggcgacgc tctacggcca
     1621 cgtcgacgat ctggcgcagt ttgtcgggct cctcgaacgc tggcgcaccc cgtagaacgt
     1681 ccggcccggg gccggcaagg gcatggcgcg actggcctcc accgttcccg cgcagtctcc
     1741 gggccggacc ccagacatac cgaagcggcc ccgcacagcc atttcccgtg gacgcagggc
     1801 cgcccgattg aaggagatcg taccgtgacc accgaagaga tccagccgta ccacgatggc
     1861 cagcacccga tcggcaacgg cacgcagaag ctctaccgat tccccaacgg ct
//
LOCUS       DATDDI010000797         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_370954, whole genome shotgun sequence.
ACCESSION   DATDDI010000797 DATDDI010000000
VERSION     DATDDI010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370954"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..805)
                     /locus_tag="VIU37_11615"
     CDS             complement(<1..805)
                     /locus_tag="VIU37_11615"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6014653.1"
                     /translation="MIVIARLTVRELVRRRVVWVLAALTILSVTLVAVGLDRLVSLAR
                     ADGTNEVEIRIGVSQVLILIAFMFSFVLAMTAAFVGAPAIGGELESGVALAILARPLR
                     RAEVLLGRWLGSALIVVAYTAASGLLAIAVATQISGYGPPEPFLAVAFLSGQALVLLT
                     LTLALGSVLPSIAAGAIAVVGFGLGWMAGVLAGVAAAFGVEVLGQVAEVSRWILPSDG
                     LWRGVIYGLEPPLVVMLATGNLPRYADANPFYASAPPPLPFVIWSVAWLA"
     gene            complement(802..1719)
                     /locus_tag="VIU37_11620"
     CDS             complement(802..1719)
                     /locus_tag="VIU37_11620"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014654.1"
                     /translation="MSTPAIEFDGITKRYGRTTALDTLSLRVGRGELVGLLGPNGAGK
                     TTAVKLVLGLVRPTSGSGHVLGAPIGDRAARARIGYLPELFRYQPWLRAREVLALHAE
                     LAGVAPGRRAAATAEALDQVGLTDRADDPVHDFSKGMQQRLGLGVALLGQPELILLDE
                     PTSALDPVGRTDVRAIVRSARDRGATVILNSHLLTEVERVCDRVVILHHGRVIASGPL
                     DEVVAADGVRLRVSDLDESGREALARFGPLATDGDWLSIRPLEAARIPEVVAAVVAAG
                     GRVHAVEPGRGSLEARFLELVTAPPEETA"
BASE COUNT          341 a          778 c          793 g          235 t
ORIGIN      
        1 tcgcgagcca ggcgacagac cagatgacga acgggagcgg cggcggcgcc gaagcgtaga
       61 acgggttcgc gtcggcgtag cgcggcaggt tgccggtcgc gagcatgacg acgagcggcg
      121 gctcgaggcc gtagatcacg ccgcgccaga gcccgtcgct gggaaggatc cagcggctga
      181 cctctgccac ctgtcccagg acctcgactc cgaacgccgc ggccaccccc gccagcacgc
      241 cggccatcca gccgagcccg aagccgacga ccgcgatcgc cccggccgcg atcgacggca
      301 ggaccgagcc gagggcgagg gtcaacgtca gcagcacgag cgcctggccg gacaggaacg
      361 cgactgccag gaagggctcg ggcggtccgt agccggagat ctgcgttgcc accgcgatcg
      421 ccagcaggcc cgaggccgcc gtgtaggcca cgacgatcag cgccgacccg agccaccgac
      481 cgagcaggac ctcggcgcga cgcaacgggc gcgccaggat cgccagcgcg accccggatt
      541 ccagctcgcc gccgatcgcc ggcgccccga cgaaggccgc cgtcatggcc agcacgaagc
      601 tgaacatgaa ggcgatcagg atcagcacct gcgagacccc gatccggatc tcgacctcgt
      661 tcgtcccgtc cgcgcgggcc aggctgacga gccgatcgag gcccaccgcg accagcgtga
      721 ccgacaggat cgtcagcgcg gcgaggaccc agaccacccg ccggcggacg agctcgcgaa
      781 cggtcagccg ggcgatgacg atcacgcggt ctcctccggc ggcgccgtca cgagctcgag
      841 gaagcgcgcc tcgagcgatc cccggcccgg ctcgaccgcg tggacccggc cgccggcggc
      901 gacgaccgcc gcgacgacct cggggatccg ggcggcctcg agcggacgga tcgacagcca
      961 gtcgccgtcg gtcgcgagcg gcccgaagcg ggcgagcgct tcgcgccccg actcgtcgag
     1021 gtcgctgacc cggaggcgga cgccgtcggc ggccacgacc tcgtcgagcg ggccggatgc
     1081 gatcacgcgg ccgtggtgga ggatcacgac ccggtcgcag acgcgctcga cctcggtcag
     1141 gaggtgcgag ttcaggatca cggtcgctcc ccgatcgcgc gccgaccgaa cgatcgcgcg
     1201 aacgtcggtc cgaccgaccg gatcgagcgc cgacgtcggc tcgtccagga ggatcagctc
     1261 gggctggccg agcagggcga cgccgagccc gagccgctgc tgcatgccct tcgagaaatc
     1321 gtggacggga tcgtcggcgc ggtcggtcag gccgacctgg tcgagcgcct cggccgtggc
     1381 ggcggctcgc cggcccgggg ccacgccggc aagctcggcg tggagggcca ggacctcgcg
     1441 tgcccggagc cagggctggt agcggaacag ttcgggaagg tagccgatgc gggcgcgggc
     1501 cgcgcgatcg ccgatcggcg cgcccaggac gtggccgctc ccgctggtgg ggcgcacgag
     1561 ccccaggacg agcttgaccg ccgtggtctt gcccgccccg ttcggtccga gcaggccgac
     1621 cagctcgccg cggccgaccc gcaggctcag ggtgtcgagc gcggtcgtcc ggccgtatcg
     1681 cttggtgatg ccgtcgaact cgatcgccgg cgttgacacg ctagctgtca cagggcaccc
     1741 gcaaggtgcg gaccatcgat cacggtccag caggaacgga gtggaacaca gtggtcacct
     1801 tcgattgtcc atggtgcgcc gaaccggcga tggtggaatc cgccgaggcc gacgaggtca
     1861 tctgcgaggg ctgcggcgtc cgggccgcgc tcgcaccgga tccggtcacc gagccgatcg
     1921 cccgggccgc ctgagggacg cgcccaccgc ggcatccgtg acgccgagcc gacgtagcat
     1981 ggcgcggtgg accagcagct cgcagccgaa gcgctcatcg acgcgggccg gcggctcggg
     2041 gcccgggggt tgatctccgc cggtgaaggc aacctgtcga tccggctcga cgcggaccgc
     2101 gtgctgatca cgccgtccgg ccggcgcaag gacgagctcg tccggga
//
LOCUS       DATDDI010000798         2322 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_516633, whole genome shotgun sequence.
ACCESSION   DATDDI010000798 DATDDI010000000
VERSION     DATDDI010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_516633"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(529..1158)
                     /locus_tag="VIU37_11625"
     CDS             complement(529..1158)
                     /locus_tag="VIU37_11625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014655.1"
                     /translation="MAAACASDGIGHPSAPVGAPLPFVVEPVTPPVADPGSPEVEPGS
                     PGVEPGSFPGPALDPPGRPKPSDGDDPPPVVPPAAPLGGAPVGGGAPFESGPGVGVGV
                     VVGTGVGFGVGTGVGFGVGVALGVGDGVGEGFGVGAGVGVGVGVGVGVGFGVGVGVGL
                     GVGDGVAVGVGEGVGRGVGAGVGAGVGVGVGVQSGPLLPLPWSHPFVPV"
     gene            1220..1951
                     /locus_tag="VIU37_11630"
     CDS             1220..1951
                     /locus_tag="VIU37_11630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0070064 - proline-rich region binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEY6014656.1"
                     /translation="MPGDARTWGPLASALAALGLSGVPFTGLSLGMSAATATGVVGAA
                     MAFGLFGKRRRAGDPPGPDEELAAAAAMGLGARPLPTPVPAFEEAEDPEAQLPRWRRP
                     SLLLARKADPVRDATPAARLTFDDGLVGPLDGRERRMIRYRIVRMLDTPDELRGIETG
                     YLDRGDEVQLLEKYGAYWLVLCPDGRQGWVHNMTLGEIVDDDAPIDDRPVATMPLAAE
                     TWTMGESDDDTDVLEAYLESRRRQS"
     gene            complement(1921..>2322)
                     /locus_tag="VIU37_11635"
     CDS             complement(1921..>2322)
                     /locus_tag="VIU37_11635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014657.1"
                     /translation="LSETHANRRTDYAMVTDSADDLANAVDYPAFLDRMGEVFGELHR
                     VLRDGRYAVVIVRDAYQGGRYLFTGSDLAARASAAGFVPKGDLIWYQAGTRLRPYGYP
                     HAFVPNIVHQHVLVLRKEAGRRQDWRRRDSR"
BASE COUNT          331 a          930 c          804 g          257 t
ORIGIN      
        1 ggcgatcccc aggccggctg tcgtcagcag gaccccgaag acggagccgc cgacgagcac
       61 gccgagccgg ggactccggc ggtgtggggt gatgagtgcc atcccgtcta cgatgcctga
      121 tcgtcgacga tcggccaatg accaatccgg ctgtccatcc cccgccagtg gggccaccgg
      181 ctaccccgga ccgcaccgga cccgaccgtc ccggtggcga ttcgcaccgc gttagggcca
      241 tgggaccacc ggcgtccggg gccggtcgtg caccgggacc cccgtaccat agcccgggcg
      301 attggggcgg cccatcctcc gatgtgcacc gggtccgcag tcccgggcga ggaggcccca
      361 gtcagtgctc gtcaacggac gtcaccgcga acggagcgac cgatggtcgt tgcccgcggc
      421 cgcgcttgcc gctgcgatgc tgctgctcgc gctcgtcctc ccggtcgcgg ccgccacggg
      481 cgcctcggac cccaccaacg gcgtctcggg cttcggcggc tcggtgctct acacgggcac
      541 gaacgggtgc gaccagggca acggcaacaa gggacccgat tgcaccccga cgccgacccc
      601 gacgccggcg ccgacgccgg cgcccacgcc gcgaccgacg ccctcgccca cgccgaccgc
      661 cacgccgtcg cccacgccca ggccgacccc gaccccaacg ccgaagccga cccccacccc
      721 gaccccgacg ccgaccccga ccccggctcc gaccccgaag ccctccccca cgccgtcgcc
      781 gacgccgagg gcgacgccga ccccgaagcc cacgcccgtc ccgacgccga agccgacgcc
      841 cgtccccacg accaccccga caccgacgcc cggaccggac tcgaacggcg ccccgccgcc
      901 caccggcgcc ccgcccaacg gcgcggccgg cgggaccacg ggtggcgggt catcgccgtc
      961 cgacggcttc ggcctgccgg gcgggtcgag cgccggtccc gggaacgatc cgggctcgac
     1021 gccgggtgat cctggctcga cctccggcga ccccggatcc gcaaccggcg gggtcaccgg
     1081 ttccacgacg aacggcaacg gcgcgccgac cggcgccgac gggtggccga tcccgtccga
     1141 cgcgcacgcc gcggccatcc gcggggtcga cggttccggt ggcaccaacg gcggaacgca
     1201 ggactcgccc cagggatcga tgccgggcga tgctcggacc tggggtccgc tggccagcgc
     1261 cctggcggca ctcggcctgt cgggcgtccc gttcaccggc ctcagcctcg gcatgtcggc
     1321 ggccaccgcg accggcgtcg tcggcgccgc gatggccttc gggctgttcg gcaagcgtcg
     1381 ccgcgccggc gatccacccg gcccggacga ggagctcgcc gcggcggcag cgatgggcct
     1441 cggcgcccga cccctcccga cgccggtccc ggcattcgaa gaggcggaag accccgaggc
     1501 gcagttgccg cgctggcgac gcccctcgct gctcctggcg cgcaaggccg atccggtccg
     1561 cgacgccacg ccggcggctc gcctgacctt cgacgacggg ctcgtcgggc ccctcgacgg
     1621 gcgcgagcgg cggatgatcc gctaccgcat cgtgcgcatg ctcgacacgc ccgacgagct
     1681 gcgcgggatc gagacgggct atctcgaccg cggtgacgag gtccagctgc tcgagaaata
     1741 cggggcctac tggctggtgc tctgcccgga cggccggcag ggctgggtcc acaacatgac
     1801 gctgggcgag atcgtggacg acgacgcccc gatcgacgac cgaccggtcg ccacgatgcc
     1861 actcgccgcg gagacctgga cgatgggcga gagcgacgac gacacggacg tcctcgaggc
     1921 ctacctcgag tcccgccgcc gccagtcctg acgccgcccc gcctccttgc gcagcaccag
     1981 cacgtgctgg tggacgatgt tcgggacgaa ggcgtgcggg tagccgtacg gccggagccg
     2041 ggtcccggcc tggtaccaga tcaggtcgcc cttcggcacg aagccggcag ccgacgcccg
     2101 cgccgcgagg tccgacccgg tgaacaggta gcggccgccc tggtacgcgt cacgcacgat
     2161 gaccacggca taccggccgt cgcgcagcac ccggtggagc tcgccgaaga cctcgcccat
     2221 ccggtcgagg aaggccggat agtcgaccgc gttggccagg tcgtccgccg agtcggtgac
     2281 catggcgtag tcggtccggc ggttggcgtg ggtctcggac ag
//
LOCUS       DATDDI010000799         2006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_58647, whole genome shotgun sequence.
ACCESSION   DATDDI010000799 DATDDI010000000
VERSION     DATDDI010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58647"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VIU37_11640"
     CDS             complement(<1..194)
                     /locus_tag="VIU37_11640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014658.1"
                     /translation="MTPGAGFDARQPSANVAEALSVVTAAHPDRAALVGQDGRTRCTF
                     AELAERATWIASSLVRRGLRP"
     gene            complement(191..1219)
                     /locus_tag="VIU37_11645"
     CDS             complement(191..1219)
                     /locus_tag="VIU37_11645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014659.1"
                     /translation="MSKTTASRVRELSPGELDSSTDRRLALDHPFLHVGTWRAFVAGD
                     GRDEVRLVASIDPRQRVPAGLVGAIGFIATRGDVRRPASVAAMRLALEAAERWLHRSG
                     ASVVRSPVEFSTWYGHRAMTAGFPERGGPPPFPMEPVNGPGLVEVLTAVRYTVAHTAA
                     SYEVPVERWVAGAQLGERLMRTAGFSDRPIRLDRLDAELRTIHAISMAAFRRSWGFSE
                     ISLDEFQAIYRPLVPHIEPAFVRLAISPEGNPVGFVLALADPAASPGAPDARFVVKSI
                     AVLPEVRHVAPGVGTGLAVAVHRQAAASGYRAAIHACVADEAYTQRISARFGERIRSY
                     ATFEKVLP"
     gene            complement(1216..>2006)
                     /locus_tag="VIU37_11650"
     CDS             complement(1216..>2006)
                     /locus_tag="VIU37_11650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014660.1"
                     /translation="PTMPLDGPDRLLAGAAVVVAVYGILFGAAELLRRWGVDGERTRS
                     LVHVMAAILALGLPYLFGSPWPVVVLAVAFAASMIVSRRLGLLGSIHDVRRETVGAAM
                     FPLGIAAAYVLTAGQVPGYPIAVLALGLGDPAAAVAGRRCAHRYAAIWGTRRSLEGSA
                     VACLVSGMAAIVVLQIAGGVGWLSLVPMALAVGVAVALAEATSPLGFDNLAIPSVAAI
                     VVDVAGRPWWLAAIAVALAMVTAAGVARDDSVRVGLARRYGRVP"
BASE COUNT          334 a          740 c          710 g          222 t
ORIGIN      
        1 ggacgcaatc cacgacgcac gaggctcgac gcgatccaag tggcacgctc ggcgagctcg
       61 gcgaaggtgc agcgtgtccg tccgtcctgc ccgacgagcg cggcccggtc cgggtgagca
      121 gccgtcacga cggacagcgc ctcggccacg ttcgccgacg gctgacgcgc gtcgaagcca
      181 gcgccgggcg tcacggcagc accttctcga aggtggcgta ggagcgaatg cgttcaccga
      241 accgggcgga gatccgctgc gtataggcct cgtccgcgac gcacgcgtgg atggctgccc
      301 gatacccact ggcggcggcc tgtcgatgga cggcgacggc caggcccgtg ccgacacccg
      361 gcgccacgtg acggacctcg ggcaggacgg cgatgctctt cacgacgaac cgggcatccg
      421 gtgcgcccgg gctggccgcg ggatcggcca gcgcgaggac gaacccgacc gggttgccct
      481 cgggcgagat cgccagtcgg acgaaggccg gctcgatgtg cggcacgagc ggccggtaga
      541 tggcctggaa ctcgtcgagc gagatctcgc tgaaccccca gcttcggcgg aacgccgcca
      601 tcgagatggc atggatggtt cgcaactcgg catcgagtcg atccagccgg atcggccgat
      661 cgctgaagcc ggccgtccgc atcaggcgct cgccgagctg cgcacccgca acccagcgct
      721 cgaccggcac ctcgtaggag gccgcggtat gcgccaccgt gtatcgcacc gcggtcagca
      781 cctcgaccag gcccggaccg ttcaccggct ccatcgggaa gggtggcgga ccgccccgtt
      841 ccgggaaccc ggcggtcatg gcccggtggc cgtaccaggt cgagaactcg acggggctgc
      901 gcacgacgga cgccccggac cggtggagcc accgttcggc ggcctcgagc gccagccgca
      961 tggctgcgac actcgccggg cggcggacat ccccgcgggt cgcgatgaag ccgattgccc
     1021 cgacgaggcc ggccgggacg cgctgacgcg gatcgatgct cgccaccagc ctgacctcgt
     1081 cgcgcccgtc gccggcaacg aacgcccgcc acgttcccac gtgcaggaac gggtggtcga
     1141 gggcgaggcg acgatccgtc gacgagtcga gctcgcccgg cgacagctct cggacccgcg
     1201 atgccgtcgt cttgctcatg gcactcgtcc ataccggcgg gcaagcccga ccctgaccga
     1261 gtcatcgcgt gccaccccgg ccgcggtgac catcgcgagc gcaaccgcga tggcagccag
     1321 ccaccagggc cggccggcga cgtcgaccac gatggccgca accgagggga tggcgaggtt
     1381 gtcgaacccg agcggtgacg tcgcctcggc gagcgccacc gcgacgccga cggccagcgc
     1441 catcgggacg agggacagcc aaccgacacc gccggcgatc tggaggacga cgatcgcagc
     1501 catccccgac acgagacacg ctacggccga cccctccagg ctgcgccgcg tcccccagat
     1561 cgcggcgtac cgatgggcgc agcgtcgacc ggcgacggcc gccgccggat cgccgagccc
     1621 gagcgcgagg accgcgatcg ggtagccggg gacctggccc gcggtcagca cgtaggccgc
     1681 cgcgattccc agcgggaaca tcgccgcccc gaccgtctcg cgccggacgt cgtggatcga
     1741 tccgagcagg ccgagccgcc ggctgacgat catcgaggct gcgaaggcga ctgccagcac
     1801 gaccaccggc catggcgatc cgaacaggta cggcaggccg agggccagga tcgccgccat
     1861 gacgtggacg agcgagcgcg tgcgttcgcc gtcgacgccc cagcgccgga gcagctcggc
     1921 agcaccgaac aggatgccgt acaccgcgac caccacggcg gcaccggcca gcaagcgatc
     1981 gggtccgtca agcggcatgg tcggtc
//
LOCUS       DATDDI010000800         3128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_745161, whole genome shotgun sequence.
ACCESSION   DATDDI010000800 DATDDI010000000
VERSION     DATDDI010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_745161"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1887
                     /locus_tag="VIU37_11655"
     CDS             <1..1887
                     /locus_tag="VIU37_11655"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY6014661.1"
                     /translation="VTRDPRWGRIEETYGEDPYLAAELGCAYIAGIQGERLSEGVIAT
                     GKHMVGHGLAEGGLNQAPVHLGPREMRDEQLFPFEAAVRQAGVASIMPAYCDVDGVPC
                     HASPELLTGILRDEWGFDGIVSSDYVGLHMLSTQHHLTADLSVAAAAGLRAGVDAELP
                     GTVVYGEPLLRALADGLVDEALIDATVERALRMKFRLGLFEQPYVEPPSAELMAALAQ
                     DEALVARELATRSLVLLENDGVLPLRPDVASVAVIGPIAASARELLGDYAHLLHIETL
                     LEMRHNGNAFGFPLTDEIVPADELAGRRTILDAIDARLPGADVQHARGTGIHDGTDAE
                     IAEAVELARASDVAIVVLGERSGLTDNSTTGEFRDRMELGFMGRQQELLEAVVATGTP
                     VVLVVVSGRPLAIEWAARHCAAVLYAWVPGEAGPEAIVAAIVGDENPGGKLPVSVPRQ
                     VGQVPVSYRHHPTGGRSNPKGDYVDGPASPLWAFGFGRSYTTFELSDLRLDLPEIPTA
                     GGEITVSAEVANSGDRRGDEVVQLYVRDPEATVARPVLELRGFRRVSLAPGERRRVSF
                     RLSAEQFAYVGADYRRVIEPGTIKVFVGTSSDDLPLASQFELVGPTVQLRERHRYLTE
                     TALG"
     gene            1880..>3128
                     /locus_tag="VIU37_11660"
     CDS             1880..>3128
                     /locus_tag="VIU37_11660"
                     /inference="COORDINATES: protein motif:HMM:NF018647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HEY6014662.1"
                     /translation="MADARVAVDPAAAIGEVDQRIFGSFVEHMGRAIYGGLYEPGHPA
                     ADRDGWRQDVIALTRELGVTIVRYPGGNFVSGYDWEDGVGPRRDRPVRQDRAWRSIEP
                     NAVGTDDFLAWTRLAGVAPMLAVNLGTRGATEARNLVEYCNAATGTRFSDRRASNGHA
                     APYGVGVWCLGNEMDGPWQIGHTTAEDYGRRALEAGTAMRRVDPSIELVACGSSGSAM
                     PTFGSWEETVLDIAWDVTDHVSLHAYYDPAAYGAIEDFLACSLDLERTIDRVAAIADG
                     VAERKGSGRRIGLSVDEWNVWHLTEHLAREARDQGVAYRRAPALAEDEQDVADALAVG
                     GLLITLLRHADRVRIACLAQLVNVIPAIRTIDGGPAWRQTSFHVFADVARLGRGTALA
                     LDIDGPVCRVAGEGAVPAIHAVAI"
BASE COUNT          419 a         1115 c         1153 g          441 t
ORIGIN      
        1 gtcacgcgcg acccccgctg gggacggatc gaagagacgt acggcgagga cccgtacctg
       61 gccgccgagc tcgggtgtgc ctacatcgcc ggcatccagg gcgagcggtt gtcggagggc
      121 gtgatcgcga ccggcaagca catggtcggg cacgggctcg ccgagggcgg cctcaaccag
      181 gcgcccgttc accttggccc gcgcgagatg cgtgacgagc agctcttccc gttcgaggcc
      241 gccgtccgcc aggcgggcgt cgccagcatc atgccggcct actgcgacgt cgacggcgtg
      301 ccgtgccatg cttcgcccga gctcctcacc ggcatcctcc gcgacgagtg gggcttcgac
      361 ggcatcgtct cgtcggacta tgtcggactg cacatgctgt ccacccagca ccatctgacc
      421 gccgacctgt ccgtggcggc agcggccggg cttcgggcgg gggtcgacgc cgagctgccg
      481 ggcaccgtgg tctacggcga gccgctgctg cgggccctgg ccgacgggct ggtcgacgag
      541 gcgctcatcg acgccacggt cgagcgggcg ctgcggatga agttccggct cggcctgttc
      601 gagcagccat acgtggagcc gccgtcggcc gagttgatgg ccgcgctcgc ccaggacgag
      661 gcgctcgtcg cgcgcgagct ggcgacccgg tccctcgtgc tgctcgagaa cgacggcgtc
      721 ctgcccctcc ggcccgacgt cgcgagcgtg gcggtgatcg gtccgatcgc ggccagcgcc
      781 cgggagctgc tgggtgacta cgcccacctg ctccacatcg agacgctgct ggagatgcgc
      841 cacaacggca acgcgttcgg cttcccgctg accgacgaga tcgtgccggc cgatgagctc
      901 gccgggcgcc gcacgatcct cgacgcgatc gacgcccgcc tgcccggcgc ggacgtccag
      961 cacgcccgag ggaccggcat ccacgacggg accgacgcgg agatcgccga ggcggtcgag
     1021 ctcgcccggg cctccgacgt cgcgatcgtc gtgctcggcg aacggtccgg gctgaccgac
     1081 aactcgacga ccggcgagtt ccgggaccga atggagctcg ggttcatggg ccgccagcag
     1141 gagctgctcg aggccgtggt cgcgaccggc acgccggtcg tcctggtggt cgtcagcggg
     1201 cggccgctcg cgatcgagtg ggcggcccgt cactgcgcag cggtcctgta cgcgtgggtg
     1261 cccggggaag ccggtccgga agcgatcgtc gcagcgatcg tcggtgacga gaaccccggc
     1321 ggcaaactgc cggtctccgt cccgcgccag gtcggccagg tgccggtctc ctatcgccat
     1381 caccccacgg gcgggcggtc gaaccccaag ggcgactacg tcgatgggcc ggcctcaccg
     1441 ctctgggcgt tcgggttcgg tcgttcgtac accacgttcg agctgtcgga cctccggctg
     1501 gatctgccgg agatccccac cgccggtggc gagatcaccg tgagcgccga ggtggccaac
     1561 agcggcgacc gccggggcga cgaggtcgtc cagctctacg tccgcgatcc ggaggcgacc
     1621 gtcgcccggc ccgtcctcga gctgcgcggg ttccgccggg tgagcctcgc acccggggag
     1681 cgtcggcgcg tctcgttccg cctgtccgcc gagcaattcg cgtacgtcgg tgccgactac
     1741 cggcgggtga tcgaaccggg cacgatcaag gtcttcgtcg ggacctcgtc ggatgacctg
     1801 cccctcgcga gccagttcga gctggtgggc ccgaccgtcc agctccggga gcggcatcgc
     1861 tacctgaccg agaccgcgct tggctgacgc ccgggtcgcc gtcgacccgg ctgccgcgat
     1921 cggcgaggtc gaccagcgga tcttcgggtc gttcgtggag cacatgggtc gcgcgatcta
     1981 cggcggcctc tacgagcccg gccaccctgc ggccgaccgc gacgggtggc ggcaggacgt
     2041 cattgccctg acccgcgagc tcggcgtcac gatcgtgcgc tacccgggcg gcaacttcgt
     2101 gtccgggtac gactgggagg acggcgtcgg gccgcggcgg gaccgcccgg tgcgccagga
     2161 ccgcgcctgg cggtcgatcg agccgaacgc cgtcgggacg gacgacttcc ttgcctggac
     2221 gaggctggcc ggggtggcgc cgatgctcgc cgtgaacctc ggcacgcggg gggccaccga
     2281 ggcccgaaac ctggtcgagt actgcaacgc cgcgaccggg acgcgcttct cggaccggcg
     2341 cgcgtccaac ggccatgccg cgccgtacgg cgtgggggtc tggtgcctgg gcaacgagat
     2401 ggacgggccg tggcagatcg gccacacgac ggccgaggac tacggccggc gggcgctcga
     2461 ggcgggcacg gcgatgcgcc gggtcgaccc atcgatcgag ctggtcgcct gcggcagctc
     2521 cgggtcggcc atgccaacgt tcgggagctg ggaggagacc gtcctggaca tcgcctggga
     2581 cgtgaccgac cacgtttcgc tccacgccta ctacgaccct gcggcgtacg gcgccatcga
     2641 ggacttcctg gcgtgctcgc tcgacctcga acggacgatc gaccgggtgg ccgcgatcgc
     2701 cgacggcgtc gccgagcgaa aggggagcgg ccggcggatc ggcctgtccg tcgacgaatg
     2761 gaacgtctgg cacctcaccg agcatcttgc ccgcgaggcg cgcgaccagg gagtcgccta
     2821 ccgccgggcg ccggcgctcg ccgaggacga gcaggacgtg gcggatgccc tggctgtcgg
     2881 cggcctcctg atcaccctgc tccggcacgc cgatcgggtc cggatcgcct gcctggccca
     2941 gctggtcaac gtcatcccgg cgatccggac gatcgacggc gggccggcct ggcgacagac
     3001 gtcgttccac gtgttcgcgg acgtcgcgag gctcggccgc ggcacggcgc tcgcgctcga
     3061 catcgatgga cccgtctgcc gggtggccgg ggagggtgcg gttccggcga tccacgcggt
     3121 ggcgatcc
//
LOCUS       DATDDI010000801         1804 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_516766, whole genome shotgun sequence.
ACCESSION   DATDDI010000801 DATDDI010000000
VERSION     DATDDI010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_516766"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /locus_tag="VIU37_11665"
     CDS             complement(<1..874)
                     /locus_tag="VIU37_11665"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6014663.1"
                     /translation="MGLFVHEVRIHPTGGQRPVPVDLLVGGDRIEAIRPLGELQPGPD
                     DVVLEGEGRLLSPPLVDPHVHLDAVLTVGEPRHNESGTLIEGIQTWAERMPSLTHEDV
                     KRRARQAILWEVAQGTGLIRSHVDVCDPNRVALRALLELRDEMRDVVDLRLIAFPQDG
                     ILSFPDGKALMREAMRLGCDVIGGIPHYEWTREDGVEEVHFIFDLAKETGAPIDLHCD
                     ETDDDQSRFLEVVAARTIRDGMQGRVVAGHTTAMGSYNDAYAFKLIQILKRAGVTIVA
                     NPLDNIVLQGRFDTY"
     gene            969..>1804
                     /locus_tag="VIU37_11670"
     CDS             969..>1804
                     /locus_tag="VIU37_11670"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014664.1"
                     /translation="MSSQDAPLRLPHRVTVVGGGFGGLYAARSLGIDPEVRLTLIDRR
                     NFHLFQPLLYQVATGALSPGEIAQPLRSVLRRQRNTTVILGEAIGLDPERREVLLADG
                     GPIAYDTLIVATGAHHSYFDHPDWAALAPGLKTIEDATEIRRRILIAFEAAEREADAE
                     RRREWMTFVVVGGGPTGVELAGALGEIAHDTLRRDFRAIRPGEATIVLVEALDRILPP
                     YPPDRSRSARQQLEGLGVDVRTKTRVVDITERSVHVIDADGKPLEIPSRTVLWAAGVA
                     ASS"
BASE COUNT          261 a          630 c          642 g          271 t
ORIGIN      
        1 ggtacgtgtc gaagcggccc tgcagcacga tgttgtcgag cgggttggcc acgatcgtga
       61 caccggcccg cttgaggatc tggatcagct tgaaggcgta ggcgtcgttg tagctgccca
      121 tggcggtggt gtggccggcg accacccgcc cctgcatccc gtcgcggatg gtccgcgcgg
      181 cgacgacctc caggaagcgc gactggtcat cgtcggtctc gtcgcagtgc agatcgatgg
      241 gtgcgccggt ctctttcgcc aggtcgaaga tgaagtggac ctcctcgacg ccgtcctcgc
      301 gcgtccattc gtaatgcggg atgccgccga tcacgtcgca gccgaggcgc atcgcctcgc
      361 gcatcagtgc cttgccatcg gggaagctca ggatcccgtc ctgcgggaag gcgatcagcc
      421 gcaggtcgac cacgtcgcgc atctcatcgc gaagctcgag cagcgcccgc agcgccaccc
      481 ggttgggatc gcacacgtcg acgtgcgagc ggatcagccc ggtgccctgg gcgacctccc
      541 acaggatcgc ctggcgtgcc cgtcgcttaa cgtcctcatg ggtcagcgag ggcatccgct
      601 cggcccacgt ctggatgccc tcgatcagcg tccccgactc gttgtggcgg ggctcgccga
      661 cggtcaggac cgcatcgagg tggacgtgcg ggtccacgag gggcggggag aggaggcggc
      721 cctcgccttc gaggacgacg tcatccgggc cgggctgcaa ctcgccgagc ggccggatcg
      781 cctcgatccg atcgccgccg acgaggagat cgaccggcac cgggcgctgc ccgccggtcg
      841 ggtggatccg gacctcgtgg acgaaaaggc ccaattcgca cctgcgtgat cgaggatctg
      901 gggctcaacc gatcggggcc gagtgtgggg ctggcgacat cgccgcgtca acctacaatc
      961 gagacagcat gtcgtcccag gatgcgccgc tccgcctgcc gcaccgagtc accgtggtcg
     1021 gcggcggctt cggcgggctg tacgcggccc gaagcctcgg gatcgatccc gaggtccggc
     1081 tgacgctgat cgaccggcgc aacttccacc tgttccagcc gctgctctac caggtggcga
     1141 ccggggcgct gtcgcccggc gagatcgccc agccgctccg ctcggtgctc cgtcgccagc
     1201 gcaacaccac ggtgatcctg ggcgaggcca tcgggctcga tcccgagcgc cgcgaggtgc
     1261 ttctcgccga cggcgggccg atcgcctatg acaccctgat cgtggcgacc ggggcgcacc
     1321 actcgtactt cgaccacccg gactgggcgg cgctggcgcc cggtctcaag accatcgagg
     1381 acgccaccga gatccggcgg cggatcctga tcgcgttcga ggccgcggaa cgggaagcgg
     1441 acgcggaacg gcggcgcgag tggatgacgt tcgtggtcgt cggtggcggt ccgaccggcg
     1501 tcgagctcgc cggggccctc ggcgagatcg cccatgacac gctccggcgc gacttccggg
     1561 cgatccgccc gggcgaggcg acgatcgtgc tcgtcgaggc gctcgaccgg atcctgccgc
     1621 cctacccgcc ggaccgatcg cggtccgcgc ggcagcagct cgaggggctc ggggtggacg
     1681 tgcggacgaa gacccgggtc gtcgacatca ccgagcgatc ggtccacgtg atcgacgccg
     1741 acggcaagcc cctggagatc ccgtcgcgca ccgtgctctg ggcggcgggc gtggccgcct
     1801 cgtc
//
LOCUS       DATDDI010000802         1509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_641665, whole genome shotgun sequence.
ACCESSION   DATDDI010000802 DATDDI010000000
VERSION     DATDDI010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641665"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1509)
                     /locus_tag="VIU37_11675"
     CDS             complement(<1..>1509)
                     /locus_tag="VIU37_11675"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY6014665.1"
                     /translation="VLASDQAPRLAELLAEEGRPTAVVSRVGEAPPPGAVVLVERSLN
                     GGFSGGPDGLTFVTDRELFGTVRIRRPKALRRVVPRDILERLTPGDLVVHIDHGVARY
                     EQMLRRGGAGEDRDYLELSFAGGDRIFVPVEQIARISRYSGGERPALSKLGGTDWLRA
                     KQRVRKAVDDLAEDLLQLYATRAQARGHAFPDDTPWQAEMEASFPYEETIDQLRAALE
                     VKADMEQVRPMDRLVVGDVGYGKTEVALRAAFKAIQDGKQVAVLVPTTVLAAQHHATF
                     SQRFAAFPLEVRLLSRFVSPAAQAATVAGLTDGTVDLVIGTHRLLSKDIRFKDLGLVV
                     VDEEQRFGVAAKERLKQLRREVDVLTLSATPIPRTLNLALAGIRDLSVIETPPEDRLP
                     IQTRVAEASAGLVRDAIVRELDRGGQVFYVHNRVETIEAQAEQLRRMLPDARFVVGHG
                     QMAEGALEKVMIAFADGAADVLVCTTIIESGLDIPNANTIIIDRADTLGLAQL"
BASE COUNT          207 a          535 c          548 g          219 t
ORIGIN      
        1 agctgggcga ggccgagcgt gtcggcccgg tcgatgatga tcgtgttggc gttcgggatg
       61 tcgaggccgg actcgatgat cgtggtgcag acgaggacgt cggcggcgcc gtcggcgaag
      121 gcgatcatca ccttctccaa cgctccctcg gccatctggc catgaccgac gacgaaccgg
      181 gcgtccggga gcatccgccg gagctgctcg gcctgcgcct cgatcgtctc gacccgattg
      241 tggacgtaga agacctgccc gccgcggtcg agctcgcgga cgatcgcgtc gcggacgagc
      301 ccggccgatg cctcggcgac ccgggtctgg atcggtagcc ggtcctccgg gggcgtctcg
      361 atcacgctca ggtcgcggat cccggcgagc gcgaggttca gcgtcctcgg gatcggcgtc
      421 gccgacaggg tcaggacgtc cacctcgcgg cggagctgct tgaggcgttc cttggccgcg
      481 acgccgaacc gttgctcctc gtcgaccacg accagcccga gatccttgaa ccggatgtcc
      541 ttggagagca gccgatgcgt gccgatcacc aggtccacgg tcccgtcggt caggccggca
      601 acggtggccg cctgcgccgc gggcgacacg aaccgcgaca ggagccggac ctccagcggg
      661 aacgccgcga accgctgcga gaacgtggcg tggtgctggg cggcgagcac ggtggtcggg
      721 accagcacgg caacctgctt gccgtcctgg atcgccttga atgccgcgcg cagcgcgacc
      781 tcggtcttgc cgtagccgac gtcgccgacg acgaggcggt ccatcggccg gacctgctcc
      841 atgtcggcct tgacctcgag cgcggcgcgg agctggtcga tcgtctcctc gtatgggaac
      901 gaggcctcca tctcggcctg ccacggcgtg tcgtcgggaa aggcgtggcc gcgcgcctgc
      961 gcccgggtgg cgtacagctg gagcaggtcc tcggccaggt cgtcgaccgc cttgcggacg
     1021 cgctgcttgg cgcgcagcca gtcggtgccg ccgagcttgg agagcgccgg gcgctcaccg
     1081 cccgagtagc ggctgatccg ggcgatctgt tcgaccggga cgaagatccg gtccccgccc
     1141 gcgaacgaga gctccaggta gtcgcggtcc tcgccggccc cgcctcgccg gagcatctgc
     1201 tcgtagcggg cgacgccgtg gtcgatgtgg accaccaggt cgccgggcgt caggcgctcc
     1261 aggatgtcgc gcgggacgac ccgccggagc gccttcggcc ggcggattcg gaccgtcccg
     1321 aacagctcgc gatcggtgac gaacgtgagc ccgtccggcc cgccgctgaa gccaccgtta
     1381 aggctgcgct ccacgaggac cacggcgccg ggcggcggcg cctcccctac ccggctcacg
     1441 acggccgtcg ggcggccttc ctcagccagc agctcggcga ggcgcggggc ctggtccgac
     1501 gcgagcacc
//
LOCUS       DATDDI010000803         2899 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_371241, whole genome shotgun sequence.
ACCESSION   DATDDI010000803 DATDDI010000000
VERSION     DATDDI010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2899
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371241"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..836)
                     /locus_tag="VIU37_11680"
     CDS             complement(<1..836)
                     /locus_tag="VIU37_11680"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014666.1"
                     /translation="MPEHPSQPLIHARDLTKRFGSFTAVDSIDFDVARGESFGFLGPN
                     GAGKTSTMRMIGSVSPITAGTLRVMGMDPATQGPQIRARVGVVPQQDTLDNELTVREN
                     LVIYGRYFGLARPEIARRADELLEFAQLSERAGDQVEPLSGGMKRRLTIARSLINEPE
                     LLLLDEPTTGLDPQARHLLWDRLYRLKQRGVTLVLTTHYMDEAEQLCDRLVVMDKARI
                     AAEGSPRELIDQYSTREVTELRFPVGVQETLDGQLDGLGERIEHLPDRVLVYSDDGEA
                     AAV"
     gene            complement(848..1615)
                     /locus_tag="VIU37_11685"
     CDS             complement(848..1615)
                     /locus_tag="VIU37_11685"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone/menaquinone biosynthesis
                     methyltransferase"
                     /protein_id="HEY6014667.1"
                     /translation="MRPAERHTPSGRSTDRGNAAPTADVRDMFDRIAGVYDPMNLVIS
                     AFQEPRWRRLAVERAGVRAGDRLLDVATGTGKVAADLLAGAQPGGTVLGVDISPRMIA
                     LARRRHAGRAGLEFVVGDALALPTEDRSFDAATIAFGMRNLPDYRRGFEEMARSVRPG
                     GRVVCLEIARPRSRPARVLQFWFDRIVPLLGRVAGHGDAYGYLIRSVKDYPGPDRVAE
                     IMCEAGLVDVSWQGMSGGIVTLHVGTVPEEKSGPTLR"
     gene            1737..>2899
                     /locus_tag="VIU37_11690"
     CDS             1737..>2899
                     /locus_tag="VIU37_11690"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6014668.1"
                     /translation="MRTLARPIGLGLAARGDVDEVVGWARQARDQGLESVWVHDSYFE
                     RDGVSFTTAIAQAIAADRDTDEAGFRVALGAANPYTRHPVVLAMTGSALDEILPGRFV
                     LGMGTGLPLRLKQMGIPYDPDTAVERVSTAIDQIRALWAGERLPSATPGLPPIQPMFP
                     PTHRIPIVIAAYRKAFVELAGQKADGYLARPAESIPSLRGILERLRASAEGAGRDPDS
                     IETAGYLLSLVDKTRREALNRAKREPFVIYMMSVLSDVSLHRAGFEADLRDRIATAWR
                     AEDFTTAGNLIPDELLDAFMLCGTREDVAAGAMAFHTQAGLHLPLLQPVLQEERQIDE
                     LIAAATIFASIPDPVVATKRESVPAVAFPPAVAGGAVAPAAASATATAATPTLT"
BASE COUNT          426 a         1059 c         1003 g          411 t
ORIGIN      
        1 acggccgccg cctccccgtc atcggagtag acgagcaccc gatccggcag gtgctcgatg
       61 cgctccccga gcccgtccag ctgcccgtcg agcgtctcct ggacaccgac cgggaagcgc
      121 agctcggtga cctcgcgggt cgaatactga tcgatcagct cgcgcgggct gccctcggcg
      181 gcgatccgcg ccttgtccat gacgacgagg cggtcgcaca gctgctccgc ctcgtccatg
      241 tagtgcgtgg tcaggacgag cgtgacgccg cgctgcttga gccggtagag gcggtcccac
      301 agcaggtggc gggcctgcgg gtcgagcccg gtcgtcggct cgtcgaggag aagcagctcc
      361 ggctcgttga tcagcgagcg ggcgatcgtc agccgtcgct tcatcccgcc ggacagcggc
      421 tcgacctggt cgccggcgcg ttcgctgagc tgggcgaact cgagcagctc gtcggcacgc
      481 cgggcgatct cgggtcgggc gagcccgaag tagcggccgt agatgaccag gttctcgcgg
      541 accgtgagct cgttgtcgag cgtgtcctgc tggggcacca cgccgacccg ggcacggatc
      601 tgcggaccct gcgtggccgg gtccatcccc atcacccgga gcgtgccggc cgtgatcggc
      661 gaaaccgagc cgatcatccg catcgtcgat gtcttgccgg cgccgttcgg ccccaggaag
      721 ccgaacgact cgccgcgggc gacgtcgaaa tcgatcgagt cgacggcggt gaacgagccg
      781 aaccgcttcg tcaggtcgcg ggcatggatg agcggctggg aagggtgctc gggcatgggc
      841 gccgatgcta ccgcaatgtc ggaccggact tctcctccgg gaccgttccc acgtggaggg
      901 tcacgatccc gcccgacatt ccctgccagc tgacgtcgac caggccagcc tcgcacatga
      961 tctcggcgac ccgatcgggg cccggatagt ccttgacgct ccgaatgaga tagccatagg
     1021 catccccgtg tcccgccacc cggccaagca agggcacgat tcgatcgaac cagaactgga
     1081 ggacgcgggc cggccggctc cgcggtcggg cgatctcgag gcagacgacc cgcccgccgg
     1141 gccggacaga ccgcgccatc tcctcgaagc cgcgacggta gtcgggcagg ttgcgcatgc
     1201 cgaaggcgat cgtcgccgca tcgaagctgc gatcctcggt cggcagcgcc agggcgtcgc
     1261 cgacgacgaa ctccagcccg gcccggcccg cgtggcgacg cctggccagc gcgatcatcc
     1321 gcggcgagat gtccacgccg agcacggtcc cgccgggctg ggcaccagcc agcaggtccg
     1381 ccgccacctt cccggtcccg gtggcgacgt cgagcagccg gtcgccggcc cgaacccccg
     1441 cgcgctcgac ggcgagccgc cgccagcgag gctcctggaa ggcggagatc accaggttca
     1501 tcgggtcgta gacgccggcg atccggtcga acatgtcgcg gacgtccgcg gtcggcgccg
     1561 cattcccgcg atcggtcgag cggccggatg gggtgtggcg ctcggctgga cgcatccggg
     1621 agatcgtacc cggcggggac ggtaacgtgc taatgccagg taacacgtag gtcgccgtcc
     1681 agtgctacga tcggcctccc gcgaccttcc cgcggcacga cggagagcct ctcgacatgc
     1741 gcaccctcgc ccgccccatc ggtctcggcc tcgcggcccg cggcgatgtc gacgaggtcg
     1801 tcggctgggc acggcaagcg cgtgaccagg ggctggaatc ggtctgggtc cacgacagct
     1861 acttcgagcg tgacggggtc agcttcacga ccgcgatcgc gcaggcgatc gccgcggaca
     1921 gagacaccga cgaagccggc ttccgcgtgg ccctcggggc cgccaacccg tacacccggc
     1981 atccggtcgt gctggcgatg accggctcgg cactggacga gatcctgccc ggccggttcg
     2041 tcctgggtat gggcaccggg ctgccgctgc ggctcaagca gatggggatc ccgtacgacc
     2101 cagacaccgc cgtcgagcgc gtctcgaccg cgatcgacca gatccgtgcg ctgtgggccg
     2161 gggagcggct gccatcggcg acgcccggcc tgccgccgat ccagccgatg ttcccgccga
     2221 cccaccggat cccgatcgtg atcgcggcct accgcaaggc gttcgtcgag ctcgccggcc
     2281 agaaggcgga cggctacctc gcccgcccgg ccgaatcgat cccgtcgctg cgcggcatcc
     2341 tcgagcggct tcgagcgtca gcggaggggg ccgggcgcga tcccgattcg atcgagaccg
     2401 ccggctacct gctgtcgctc gtcgacaaga cccgccgcga ggcgctcaac cgggccaagc
     2461 gcgagccgtt cgtcatctac atgatgtcgg tcctgtccga cgtctcgctc caccgggcgg
     2521 ggttcgaggc cgacctgcgc gatcgcattg ccaccgcctg gcgggccgag gacttcacga
     2581 ccgccggcaa cctgatcccc gacgagctgc tcgacgcgtt catgctgtgc gggacacgcg
     2641 aggacgtggc ggccggggcg atggccttcc acacacaggc cgggctccac ctgccgctgc
     2701 tccagccggt cctgcaggag gagcgccaga tcgacgagct gatcgccgcg gcgacgatct
     2761 tcgcgtcgat cccggacccg gtggtcgcca cgaagcgcga gtccgttccc gccgtcgcgt
     2821 tcccacctgc ggtcgcgggt ggcgcggtcg cgcctgccgc ggcctcggcc accgccacgg
     2881 ccgccactcc tacgctcac
//
LOCUS       DATDDI010000804         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_267389, whole genome shotgun sequence.
ACCESSION   DATDDI010000804 DATDDI010000000
VERSION     DATDDI010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267389"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VIU37_11695"
     CDS             <1..362
                     /locus_tag="VIU37_11695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014669.1"
                     /translation="EGFVQAAPDGGPDGTMLDAFLQIGVAKGDQPHYLKLIARPEADV
                     SDLIDFGLGVIAARTTRGGDRRHDRGVIAPVRTYESPIDRRLEEAGFSSIAEVTLLMK
                     ETLVRVAEPALVPAGVR"
     gene            394..>1510
                     /locus_tag="VIU37_11700"
     CDS             394..>1510
                     /locus_tag="VIU37_11700"
                     /inference="COORDINATES: protein motif:HMM:NF040318.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6014670.1"
                     /translation="MGSDDRQRESIDDLDALLASLPPEIVAAVHALPDRVSLIEVVMD
                     LGRRPEARFPDSEVTLLDREIVEADLAFVVEHIGTFGDDNRAGIERTLHRISAIRNRN
                     GKIVGLTCRIGRAVYGTIEIINDFVETGKSILIMGRPGIGKTTMLREAARVLADNLGK
                     RVVVVDTSNEIAGDGDIPHPAIGKARRMQVRTPSLQHEVMIEAVENHMPQVIVIDEIG
                     TELEAQAARTIAERGVQLIGTAHGNNLDNLMLNPTLSDLIGGIQSVTLGDEEARRRRT
                     QKSVLERKAPPTFDVVVEIQSWERVAVHLDVAQTVDALLRGHARPAQSRWLEEGQVRT
                     AETPARLVQAGERPAGVVARLPRRAAEEPEEDELLTIG"
BASE COUNT          245 a          535 c          531 g          199 t
ORIGIN      
        1 tggaggggtt cgtgcaggcg gcgccggacg gcggtccgga cggcaccatg ctcgacgcct
       61 tcctccagat cggcgtggcc aagggggatc agccgcacta cctcaagctg atcgcccggc
      121 cggaagccga tgtcagcgac ctgatcgact tcggcctcgg ggtgatcgcc gcccggacca
      181 cccgtggggg cgatcgccgg cacgaccgtg gcgtcatcgc cccggtccgg acctacgaat
      241 cgccgatcga ccgccgcctc gaggaggccg gcttcagctc gatcgcggag gtgaccctgc
      301 tcatgaagga aaccctcgtc cgcgtcgccg aaccggccct cgtgccggcc ggcgtccgct
      361 gaggtcagcc ccgccatgtc gaaggaggtc agcgtgggat ccgacgaccg tcagcgtgaa
      421 tcgatcgacg atctcgacgc gctgctcgcg tcgctgccgc cggagatcgt cgccgccgtc
      481 cacgcgctgc cggatcgggt ctcgctcatc gaggtcgtca tggacctcgg ccgccggccc
      541 gaggcgcggt tcccggattc ggaggtgacc ctgctcgatc gcgagatcgt cgaggccgac
      601 ctcgcgttcg tggtcgagca catcgggacg ttcggcgacg acaaccgggc gggcatcgag
      661 cggacgctcc accggatcag cgcgatccgc aaccgcaacg gcaagatcgt cgggctgacc
      721 tgccggatcg ggcgggccgt ctacggcacc atcgagatca tcaacgactt cgtcgagacc
      781 gggaagtcga tcctgatcat gggccggccg gggatcggca agaccacgat gctgcgcgag
      841 gccgcgcgcg tcctggccga caacctcggc aagcgtgtcg tggtcgtcga caccagcaac
      901 gagatcgccg gcgacggcga catcccgcac ccggccatcg gcaaggcacg gcggatgcag
      961 gtccgcaccc cgtcgctcca gcacgaggtg atgatcgagg cggtcgagaa ccatatgccc
     1021 caggtcatcg tcatcgacga gatcggcacg gagctcgagg cccaggccgc gcggacgatc
     1081 gccgagcgcg gcgtccagct gatcggcacg gcccatggca acaacctcga caacctcatg
     1141 ctcaacccga ccctgtccga cctgatcggc gggatccaga gcgtcactct cggcgacgag
     1201 gaggcccgcc gccggcggac ccagaagagc gtcctcgagc ggaaggcgcc gccgaccttc
     1261 gacgtggtcg tcgagatcca gagctgggag cgggtcgccg tccacctgga cgtcgcccag
     1321 acggtcgacg cgctgctgcg cggccacgcc cgaccggcgc agtcgcgctg gctcgaggag
     1381 ggccaggtgc gaacggccga gacgcccgcg cggctggttc aggctggcga gcggccggcc
     1441 ggggtcgtcg cgcgtctgcc gcgccgcgcg gccgaggagc ccgaagagga tgagctgctg
     1501 acgatcggcc
//
LOCUS       DATDDI010000805         1968 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_724977, whole genome shotgun sequence.
ACCESSION   DATDDI010000805 DATDDI010000000
VERSION     DATDDI010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724977"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1380)
                     /locus_tag="VIU37_11705"
     CDS             complement(<1..1380)
                     /locus_tag="VIU37_11705"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY6014671.1"
                     /translation="MPDPAIVKAPWGPEVDGRRLLGEAVGFGRSLRAARLSIDLGAAV
                     DFARALTLVDLADREQVRAAGAAIFVRRRDDRPVYDAAFDRWWRRRAGSAGQEFQPPS
                     LRREEEAGSEEELPGSTPPEPGAEQATMRPEERGTPIPSDADEGPDDETPIEGVVVSP
                     DAYSRGEVLRHREFDRMTPAELREAERLVDLLVPRLERRRTRRYELHSHGRRLATRQM
                     FRRNLGTGGQLLAWVWRRQIREPRSLVVLCDISGSMERHSRLLLRFIQALSAASEVHT
                     ESFVFGTRLTRVTRLMRDRDRDRALARVADSVNDWAGGTRIGDSFRTFNQHWARRSLR
                     TSGVVIVVSDGWDRGDPTIVAAETARLRRNCHRLVWLNPLAGTPGYQPLAGGMRAAYP
                     YIDDFLPAGTVASLERLGEILGGVRAGDTRRGSEAAAHAALPPDSPLVYGLPGVVGGE
                     LVDPGTARPL"
     gene            complement(1405..>1968)
                     /locus_tag="VIU37_11710"
     CDS             complement(1405..>1968)
                     /locus_tag="VIU37_11710"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY6014672.1"
                     /translation="EFLIKRPLLQALESRDGIAPVLLIDEIDRADEEFEAYLLEILSD
                     FQVTVPEIGTIRAERPPRVILTSNRTREVHDALKRRCLYHWIDYPTAQKEYEIVLAKV
                     PDAPERLAREVVAFVHRLRQADLTKVPGIAETLDWAAALLSLGARELAPELVDETLGV
                     VLKYEEDIRHVRGDGTRRYLSEAAAGG"
BASE COUNT          260 a          712 c          730 g          266 t
ORIGIN      
        1 gagtggcctc gctgttcctg gatccaccag ctcgcccccg acgacgcctg gcaggccgta
       61 gaccagcggg ctgtccggcg gcagggccgc gtgggcggcg gcctcgctgc cgcgtcgcgt
      121 gtcgccggcg cggacgccgc ccaggatctc gccgagccgc tcgaggctgg cgaccgtccc
      181 ggccggcagg aagtcgtcga tgtacggata cgcggcccgc atcccgcccg ccagcggctg
      241 gtagcccggc gtgccggcca gcgggttgag ccacacgagc cgatggcagt tgcggcgcag
      301 gcgggcggtc tccgcggcca cgatcgtggg gtcgccgcgg tcccagccgt cggacaccac
      361 gatcacgacg cccgacgtcc ggagcgatcg cctcgcccag tgctggttga acgtccggaa
      421 cgagtcgccg atccgggtgc cgcccgccca gtcgttgacc gaatcggcca cgcgtgcgag
      481 cgcgcgatcg cggtcgcggt cgcgcatgag ccgggtgacc cgggtcagcc gcgtcccgaa
      541 cacgaacgac tcggtgtgga cctccgaggc ggccgagagc gcctggatga accgcagcaa
      601 gagccgcgag tggcgctcca tcgagccgga gatgtcgcac agcacgacga gcgagcgcgg
      661 ctcgcggatc tgccgacgcc agacccaggc cagcagctgc ccgccggtcc cgaggttgcg
      721 ccggaacatc tgtcgcgtcg ccagccggcg gccgtggctg tggagctcgt agcgacgggt
      781 gcggcgccgt tcgagccgcg ggacgaggag gtcgaccagc cgttccgcct cgcgcagctc
      841 ggcgggggtc atccggtcga actcacggtg gcggaggacc tcgccgcgcg agtaggcgtc
      901 cggggaaacg accacgcctt cgatcggggt ttcgtcgtcg ggtccctcgt cggcgtcgga
      961 ggggatcggc gtgccgcgct cctcggggcg catcgtcgcc tgctcggcgc ccggctccgg
     1021 cggcgtggag ccggggagct cttcctcact cccggcctct tcctcgcgac ggagcgaggg
     1081 cggctggaac tcctggcccg cgctcccggc ccgacgccgc caccagcggt cgaatgccgc
     1141 gtcgtacacc ggccggtcgt cgcgccggcg gacgaagatc gcggcgcccg ccgcccggac
     1201 ctgctcccgg tccgcgaggt cgacgagggt gagggcgcgg gcgaagtcca cggccgcgcc
     1261 caggtcgatc gacaggcgcg ccgcccgcag cgaccggccg aacccgacgg cctcgccgag
     1321 caaccggcga ccgtcgacct cggggcccca gggcgccttg acgatggcag gatccggcat
     1381 ggcttgcacc ttgggacggt ccggtcagcc gccggcggcg gcctcgctca ggtagcggcg
     1441 cgtcccgtcc ccgcggacgt gccggatgtc ctcctcgtac ttgaggacga cgccgagggt
     1501 ctcgtcgacg agttccggcg cgagctcgcg ggcacccagc gagaggagcg cggccgccca
     1561 gtcgagcgtc tcggcgatcc ccgggacctt ggtcaggtcc gcctggcgca ggcggtggac
     1621 gaaggccacg acctcgcggg cgagacgctc gggcgcgtcg ggcaccttgg cgaggacgat
     1681 ctcgtactcc ttctgggccg tcgggtagtc gatccagtgg tagaggcagc ggcgcttcaa
     1741 cgcgtcgtgt acctctcgcg tccggttcga tgtcaggatc acgcgcggcg ggcgctcggc
     1801 ccggatcgtg ccgatctcgg ggaccgtcac ctggaagtcc gacaggatct ccaggaggta
     1861 cgcctcgaac tcctcgtcgg cgcgatcgat ctcgtcgatc aggagcaccg gcgctatgcc
     1921 gtcgcgtgat tcgagcgcct gcagcagcgg ccgcttgatc agaaactc
//
LOCUS       DATDDI010000806         1735 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_17451, whole genome shotgun sequence.
ACCESSION   DATDDI010000806 DATDDI010000000
VERSION     DATDDI010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17451"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VIU37_11715"
     CDS             complement(<1..600)
                     /locus_tag="VIU37_11715"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEY6014673.1"
                     /translation="MTVDLEPFLSAVPEPVVSRIAAARRVLAVSHENPDADTIGAALA
                     VARLVAAGGGTADLLCTDPIPPLYGFMPGIERYRTDPDPAAAYDLAVIVDCGSLERIG
                     EVGVRHADLFGRLPRVVIDHHASNDSAGSTDWIDPSAAATCELVALLASRLGVSLAID
                     DGALAANLMAGIVMDTATFAHPNATPRTLVVSAALVGAGA"
     gene            complement(597..1133)
                     /gene="rbfA"
                     /locus_tag="VIU37_11720"
     CDS             complement(597..1133)
                     /gene="rbfA"
                     /locus_tag="VIU37_11720"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEY6014674.1"
                     /translation="MSQRTQRVDELLRQEIGSIVTRDVADPRVGFATITSVETTPDLR
                     HAKVWVSVIGQPAEREATLAALRRAMPFVRHELGTRLRIKRIPDLHIQLDDTAERGTR
                     VLQLLRELEAGEVPDADAPLGESLPTPVARLPHLGDLAEEPPSAVRPPIQRRRRRDGG
                     RDGAPGDARRDSQRRGGR"
     gene            complement(1156..>1735)
                     /locus_tag="VIU37_11725"
     CDS             complement(1156..>1735)
                     /locus_tag="VIU37_11725"
                     /inference="COORDINATES: protein motif:HMM:NF023413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014675.1"
                     /translation="GSLGAITHALEQLDQEDIRLNVLLQGAGDITDNDIMLAAASDAI
                     VVGFNTKITETARRAAEAEGVDVRLYDIIYKLTDDIDAALKGLLEPEVVEVVEGRAEV
                     RQVIRVGKSTVIAGSFVTDGRIVRGNARVWRGGKIIATDRIESLRRFRDDVREVATNY
                     ECGIGLANFHDIQEGDVIECFTSQTVSRSSAG"
BASE COUNT          233 a          617 c          631 g          254 t
ORIGIN      
        1 cgcccccgca ccgaccagcg cggccgagac cacgagcgtg cggggcgtgg cgttcgggtg
       61 cgcgaacgtc gccgtgtcca tcacgatgcc cgccatcagg ttggcggcga gcgccccgtc
      121 gtcgatcgcc aggctcaccc cgagccggct ggccaggagg gccaccagct cgcaggtcgc
      181 ggccgcggac gggtcgatcc agtcggtcga gcccgccgag tcgttggacg cgtgatggtc
      241 gatgaccacc cgcggcagcc gcccgaacag gtccgcgtgg cggacgccga cctcgccgat
      301 ccgctcgagc gatccgcaat cgacgatcac cgcgaggtcg taggccgcgg ccgggtcggg
      361 atcggtccgg tagcgttcga tcccgggcat gaacccgtac aggggcggga tgggatccgt
      421 gcacagcaga tcggccgtgc cgccgcccgc ggcgacgagc ctggccactg ccagggccgc
      481 cccgatcgtg tcggcatcgg ggttctcgtg gctcaccgcg agcacgcgcc gggccgcggc
      541 aatacggctg acgacgggtt ccgggacggc cgacaggaac ggctcgaggt cgaccgtcac
      601 cgtccgcccc gtcgctggct gtcgcgccga gcgtcgcccg gggcaccgtc gcgaccaccg
      661 tcacggcggc gacgccgctg gatcggcggc cggaccgcgg acggaggctc ctccgcgagg
      721 tcgccgaggt ggggcagcct tgccaccggg gtcgggagcg attcgcccag cggcgcatcg
      781 gcgtccggca cctcgccggc ctcgagctcg cgcagcaact gcagcacacg cgtgccacgc
      841 tccgcggtgt cgtcgagctg gatgtggagg tcggggatcc gcttgatccg gaggcgcgtg
      901 cccagctcgt gccggacgaa cggcatcgcc cgccgcagcg ccgcgagggt ggcttcgcgc
      961 tcggccggct ggccgatcac gctcacccag accttcgcgt ggcggaggtc cggcgtcgtc
     1021 tcgaccgacg tgatcgtcgc gaacccgacg cgcgggtcgg ctacgtcgcg ggtcacgatc
     1081 gacccgatct cctgccgcag gagctcgtcg acgcgctggg tccgctggct catggtgatc
     1141 tcgccggccg gccggctagc cggccgatga tcgcgagacc gtctgcgacg tgaagcactc
     1201 gatgacgtcg ccttcctgga tgtcatggaa gttcgccagg ccgatgccgc actcgtagtt
     1261 ggtggcgacc tcgcgaacgt cgtcccggaa gcggcgaagc gattcgatcc ggtcggtggc
     1321 aatgatcttg ccgccgcgcc acaccctggc attgccgcgg acgatccgtc cgtcggtgac
     1381 gaacgagccg gcgatgaccg tgctcttccc gacgcggatg acctggcgca cctcggcgcg
     1441 gccctcgacg acctccacga cctccggctc gagcaggccc ttgagcgccg catcgatgtc
     1501 gtcggtcagc ttgtagatga tgtcgtagag ccggacgtcg acgccctccg cctcggcggc
     1561 gcggcgcgcc gtctcggtga tcttggtgtt gaagccgacc acgatcgcgt ccgaggcggc
     1621 ggcgagcatg atgtcgttgt cggtgatgtc gccggcgccc tgcagcagga cgttgaggcg
     1681 gatgtcctcc tggtcgagct gctcgagcgc atgggtgatc gcgccgagcg agccg
//
LOCUS       DATDDI010000807         2740 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_600264, whole genome shotgun sequence.
ACCESSION   DATDDI010000807 DATDDI010000000
VERSION     DATDDI010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600264"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..1554)
                     /locus_tag="VIU37_11730"
     CDS             complement(58..1554)
                     /locus_tag="VIU37_11730"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEY6014676.1"
                     /translation="MGRQGLERHVVDAAVYERAVQRFRDAQIRMPTFAQLSEPAMIPD
                     GLRTRLAGVEPDAPDPLNLFRVHWFNGSDRRSVVDVPQHLVLPSSLTGVAAPIIVALG
                     NRFPMIAAHKVLAAYACLAPRIVTGQFDPVEQRAIWPSTGNYCRGGVAISRIMGCRGV
                     AVLPEGMSQERFDWLEAWVTDPADIIRTPGTESNVKEIYDKCAELSLDPTNVILNQFA
                     EFGNHLGHYLVTGRALETIVDAQRRHQPRLEAAAFVSATGSAGTIGAGDWLKDRYGTK
                     IVAVEALECPTLLENGFGEHNIQGIGDKHVPLIHNVTNTDLVVAVSDVATDQVLAVFN
                     TDAGRAYLADRRGVPATLIAELGSLGISSLCNILAAIKTARKLDLGPDEAVVTIATDG
                     AAMYRSELDKILPRDFPNGFDAVAAAETFGRHVLGAGEDHLLELTGTDRDRIFNLGYF
                     TWVEQQGIPLEEFEARRPQSWWRELRSLLPAWDAMIGEFNDRTGVGAA"
     gene            1902..>2740
                     /locus_tag="VIU37_11735"
     CDS             1902..>2740
                     /locus_tag="VIU37_11735"
                     /inference="COORDINATES: protein motif:HMM:NF013482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY6014677.1"
                     /translation="MEISFSLNGQPVSADVRDGERLLEVLRDRFGLRSMKDGCAPEGS
                     CGACTVIVDGRPAVSCAQDATRVQGRNVVTLEGLPDATRDLWAGAFVSAGAAQCGYCT
                     PGIVMKVEATLARDPAPTREALARSLTGNLCRCTGYVKILDALETVAAVKRGELPAPA
                     PETEAGVGRRADRYDGRDLVLGDFPFVRDMTVPGMLHGAVALSAHPRAIVKRIDTSAA
                     ERVAGVVRVATWRDGPGERHQGLIFRDWPLMLAEGETTRYVGDVLAIVAAETRHAARE
                     AAAL"
BASE COUNT          400 a          952 c          978 g          410 t
ORIGIN      
        1 gcggaagggg ccgatccgga ggtcctcgac aacttccggc aggcggtgac ggcgctatca
       61 cgctgcgccg acgccggtcc ggtcgttgaa ttcgccgatc atcgcgtccc aggctgggag
      121 cagcgatcga agctcgcgcc accacgactg gggacgccgg gcctcgaact cctcgagcgg
      181 gatcccctgc tgctcgaccc aggtgaagta gccgaggttg aagatccggt cgcggtccgt
      241 cccggtcagc tcgaggaggt ggtcctcgcc ggcgcccagg acatggcggc cgaaggtctc
      301 cgcggcggcg acggcatcga agccgttcgg gaagtcgcgc ggcaggatct tgtccagctc
      361 ggagcggtac atcgccgccc cgtccgtggc gatcgtcacg accgcctcgt ccggcccgag
      421 gtcgagcttc ctggccgtct tgatcgcggc caggatgttg cacaggctcg agatcccgag
      481 cgacccgagc tccgcgatca gggtcgccgg gacgccgcgc cgatccgcga ggtaggcgcg
      541 gccggcgtca gtgttgaaca ccgccaggac ctggtcggtg gcgacgtcgg agaccgcgac
      601 caccaggtcc gtgttggtca cgttgtggat cagcgggacg tgcttgtcgc cgatcccctg
      661 gatgttgtgc tcgccgaacc cgttctcgag gagcgtcggg cattcgagcg cctcgaccgc
      721 cacgatcttc gtcccgtagc ggtccttcaa ccagtcgccg gcgccgatgg tgccggccga
      781 gccggtcgcc gacacgaacg cggcggcctc gagcctgggc tggtggcggc gctgcgcgtc
      841 cacgatcgtc tcgagcgcgc ggccggtcac caggtagtgg ccgaggtggt tcccgaactc
      901 ggcgaactgg ttgaggatga cgttcgtggg gtcgagcgag agctcagcgc acttgtcgta
      961 gatctccttg acgttgctct cggtgcccgg cgtccggatg atgtcggccg ggtccgtgac
     1021 ccacgcctcc agccagtcga accgctcctg gctcatgccc tcgggcagca ccgccacgcc
     1081 gcggcagccc atgatccggc tgatcgccac gccgccccgg cagtagttgc cggtggaggg
     1141 ccagatcgcg cgctgctcga ccggatcaaa ctggccggtc acgatccgcg gggcgaggca
     1201 cgcgtaggcc gccaggacct tgtgggccgc gatcatcggg aagcggttgc cgagggcgac
     1261 gatgatcggc gccgcgacgc cggtcagcga ggacggcagc accaggtgct gcggcacgtc
     1321 caccaccgag cgacggtcgg agccgttgaa ccagtggacc cggaagaggt tgagcgggtc
     1381 cggggcatcg ggctcgacgc ccgcgagccg ggtccggagt ccgtcgggga tcatcgcggg
     1441 ctcggacagc tgggcgaacg tcggcatccg gatctgcgcg tcccggaacc gctggaccgc
     1501 tcgttcgtag acggccgcgt cgacgacgtg ccgctcgagt ccttgtcgtc ccatcgtcat
     1561 cctctgacca acagcaggcg gtttcgagcg agggacgacc gctcgaacga cggatcaggc
     1621 cgggcagaat gggacgagca ccgcgtgcct tgagattggc cgggatgcta ccataccgcc
     1681 acggttctgt aacgttaatt acactaaccg gaaggaatac gtaaccttac ctgtaccgag
     1741 aaggcgctcc ggtagggcca atcggtcctg attcacgggt gcccaacggc ccgtcgacag
     1801 ggccgaatag cgggtcccca atcccccccg gcgggggaag ctcaacatcc aggctgcggc
     1861 ggccccgtcc tccatctcgc ggccagcgaa ggcaggttct gatggagatc tccttttcgc
     1921 tgaacggcca gcccgtctcg gccgacgtgc gcgacggcga acgcctgctc gaggtgctgc
     1981 gggaccggtt cgggctccgg tcgatgaagg acggctgtgc gccggaggga tcgtgcggcg
     2041 cgtgcacggt catcgtcgac ggccgtccgg ccgtctcctg cgcccaggac gcgacgcggg
     2101 tccagggacg caacgtggtc acgctcgagg gcctgcccga cgcgacccgg gacctatggg
     2161 ccggcgcgtt cgtctccgcc ggcgccgccc agtgcggcta ctgcacgccc ggcatcgtca
     2221 tgaaggtgga ggccacgctc gcccgcgatc cggcgcccac gcgggaggcg ctggctcgct
     2281 cgctcaccgg caacctgtgt cgctgcaccg gctacgtcaa gatcctcgac gcgctcgaga
     2341 ccgtcgccgc cgtcaagcgg ggcgagcttc cggccccggc gccggagacg gaagccggcg
     2401 tcggccggcg cgccgaccgc tacgatgggc gggacctcgt cctgggcgat ttcccgttcg
     2461 tgcgcgacat gaccgtcccg gggatgctcc acggcgcggt ggcgctgtcc gcgcacccgc
     2521 gggcgatcgt gaagcggatc gacacgtccg ccgccgagcg cgtggcgggg gtcgtccgcg
     2581 tcgccacctg gcgcgacggc ccgggcgagc gccaccaggg cctcatcttc cgcgactggc
     2641 cgctcatgct cgcggaaggg gagaccaccc gctacgtcgg cgacgtgctg gcgatcgtcg
     2701 ccgcggagac ccgccatgcc gcccgcgagg cggcagccct
//
LOCUS       DATDDI010000808         1876 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_288141, whole genome shotgun sequence.
ACCESSION   DATDDI010000808 DATDDI010000000
VERSION     DATDDI010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288141"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..>1876
                     /locus_tag="VIU37_11740"
     CDS             69..>1876
                     /locus_tag="VIU37_11740"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY6014678.1"
                     /translation="MKRDFHIRREPRRRYAVGGSLIGTRGDLVVADTAGIRRLAGRMN
                     AERAGGAPSVQAGEIGALGLLHEIGHLLVARYEASRRPGAMATALAALDATLGPDSHR
                     LLARFGQEFPGAGPEPEPPIHRLEELMLTRISNENPALGTLLELVDDREIAHGTRYAE
                     AIAELESVFADGPPGDDRGTSLIELMRTPARVAPTSLAAQLRYIRDHWGPILGPGLDD
                     LIRRLDLAIGILSEEEHALHLRFGGGPGGPGAPVETPSFAGAADEPEAFSSDSAWMPR
                     VVLMAKSTYVWLDQLSRSYGRPIATLDAIPDEELDTLARWGVTALCLIGLWERSRASE
                     RIKRMRGNQEAVASAYSLDDYRIAGDLGGEAAYAHLRDRAATRGIRLASDMVPNHMGI
                     DSRWVIEHPEWFLSLPEPPYPAYAFGGADLSTDERVGIVLEDHYWDDSDAAVVFKRFD
                     RWSGDVRYVYHGNDGTSFPWNDTAQLNFLDPAVREQVIRTILEVARRFPIIRFDAAMV
                     LAKKHIQRLWWPEPGTGGGIPSRAEHAIPRTEFDARMPVEFWREVVDRVAAEIPGTLL
                     LAEAFWQLEGYFVRTLGMHRVYNSAFMHMLRDENGAG"
BASE COUNT          277 a          685 c          654 g          260 t
ORIGIN      
        1 gacctcgcgc catcgcccgg agcgcccggc acccggtcgg cgtcgagagc gacgcgtacg
       61 atgccccggt gaaacgtgac ttccatatcc gccgcgaacc gcgccggcga tacgccgtgg
      121 gcggatcgct gatcgggacc cgtggcgacc tcgtcgtggc cgacacggcc ggcatccgca
      181 ggctggccgg ccggatgaac gccgaacgag ccggcggggc gccgtcggtc caggcgggcg
      241 agatcggggc gctcggactg ctccacgaga tcgggcacct gctggtcgcc cgttacgagg
      301 cgagccgccg tcccggagcg atggccaccg cgctggcggc gctcgacgcc acgctcggcc
      361 cggacagcca ccggctgctc gcccggttcg gccaggagtt cccgggcgcc ggtccggaac
      421 cggagccgcc gatccaccgc ctcgaggagc tgatgctcac ccgcatctcc aacgagaacc
      481 cggccctcgg cacgctgctc gagctggtgg acgatcgcga gatcgcccac ggtacccgct
      541 acgcggaggc gatcgccgag ctcgagtcgg tcttcgccga cgggccgccc ggcgacgacc
      601 ggggcacctc gctgatcgag ctgatgcgga ccccggcccg cgtggctccg acgtcgctgg
      661 ccgcccagct gcgctacatc cgcgaccact ggggaccgat cctcgggccg ggactggacg
      721 accttatccg ccgcctggac ctggcgatcg ggatcctctc cgaggaggag cacgcgctcc
      781 acctgcgctt cgggggcggg cccggcgggc ccggcgcgcc ggtcgagacc ccgtcgttcg
      841 ccggcgccgc cgacgagccg gaggccttct cgtcggattc ggcctggatg ccgcgcgtgg
      901 tcctcatggc caagagcacg tacgtctggc tcgaccagct gtcgcgatcg tacggccggc
      961 cgatcgccac gctggacgcc atcccggacg aggaactcga cacgctcgcc cgctggggcg
     1021 tcacggcact gtgtctgatc ggcctctggg aacgatcgcg ggcgtcagag cggatcaagc
     1081 ggatgcgtgg caaccaggaa gcggtcgcct cggcctattc gctcgacgac taccggatcg
     1141 ccggcgacct cggcggcgaa gcggcctacg cccacctgcg cgatcgggcc gcgacccgcg
     1201 gcatccgcct ggccagcgac atggtgccaa accacatggg catcgattca cgctgggtca
     1261 tcgagcaccc cgagtggttc ctgtcgctgc ccgagccccc ctaccccgcc tacgccttcg
     1321 gcggcgcgga cctctcgacc gacgagcggg tcgggatcgt gctcgaggac cactactggg
     1381 acgacagcga cgcggcggtc gtgttcaagc ggttcgatcg ctggagcggt gacgtccgct
     1441 acgtctacca cggcaacgac gggacgagct ttccctggaa cgacacggcg cagctcaact
     1501 tcctcgatcc cgcggttcgc gagcaggtga tccgaacgat cctggaggtc gcccggcgct
     1561 tcccgatcat ccgcttcgac gcggcgatgg tcctcgccaa gaagcacatc cagcggctgt
     1621 ggtggcccga gcccgggacc ggcgggggca tcccgtcgcg cgccgagcac gccatcccaa
     1681 ggaccgagtt cgacgcgcgg atgccggtcg agttctggcg cgaggtcgtc gaccgcgtgg
     1741 cggccgagat cccgggcacg ctgctgctgg cagaggcgtt ctggcagctc gaggggtact
     1801 tcgtacggac cctcggaatg catcgcgtct acaacagcgc gttcatgcac atgctgcgcg
     1861 acgagaacgg agcggg
//
LOCUS       DATDDI010000809         2743 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_475093, whole genome shotgun sequence.
ACCESSION   DATDDI010000809 DATDDI010000000
VERSION     DATDDI010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2743
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475093"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..1525
                     /locus_tag="VIU37_11745"
     CDS             101..1525
                     /locus_tag="VIU37_11745"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HEY6014679.1"
                     /translation="MSEASRPYDMDCPHPAWAQEDPSDWWLALREVIAELMASARLAP
                     ADVAAIAFSSQVDGVVAVDETGAVLHPAIIWLDRRAEAQTAALGRRIPSRELFDRSGL
                     NLDSSHVAPKILWLRDHAPKAYARTAVFHLPGSWAVERLTGTAVVDHSNASSTLLYDV
                     RRRDWSDTLLDAAGLDRSRLPRVADSTDVAGTVTPAAAAALGLTVECRVAVGSGDEHA
                     ACLGAGVLRAGPICDIAGTAEPVAVASDTPVFDRTGLVETHAHADPRSWLIENPGFVS
                     GGSVRWFNDIVGRTTFEELCRLADDVPPGSDGAIFVPALSGAMTPRWNGRARAVFHGL
                     SMAHGLGHLARAVFEGCTFGLRDIVDRFAELGLGDGEIRVVGGGSRSDLLLQMKADVT
                     GKPVRRVMQPEATALGATMLAAVVAGTFDSLDAAAAEVVRLEDRVYEPDPSTRRAYED
                     AYRTYRDLYDAVEPLFDREAAVVS"
     gene            1515..>2743
                     /locus_tag="VIU37_11750"
     CDS             1515..>2743
                     /locus_tag="VIU37_11750"
                     /inference="COORDINATES: protein motif:HMM:NF025065.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY6014680.1"
                     /translation="MSAESTIRAPLPDPTDLAALRALLDEADPGRVLHPVGMGVVRIG
                     PDALAEVPEIVGSLRRSGPIAVLTDSTPMRRGSADLKPSLVARLERLGEVRWTILGRD
                     RAELHADDDALAEADRAIAGAGCVVSIGSGTITDIAKDATHRAGGLPLLVVQTAVSVN
                     AFSDDMAVLIRNGVKRTTPSRWPDALVIDLPVIADAPPAMNRAGFGELASMFTAPADW
                     YLAGALGMDEAWHPAPVALFRREGEALLAAADAVRAHEAGALALLARLMTLSGMALGV
                     AGSTAPISGTEHIVSHLLDMDAEGAGRPLAFHGAQVGVAAIVVALAWAETLDTFDPAN
                     VDVDAAYPDGHDVESEVRAAFGPLDRTGAVADECWRDVERKLERWRAARPRFEAFLAD
                     WPRHRAALRDLVIDPATL"
BASE COUNT          357 a          985 c          988 g          413 t
ORIGIN      
        1 tagtcataag cccatgtctg gtcttctgag gggaaggtaa gaagatagat tgccataccg
       61 ccgacgctga taatgtcgcc tatggaccga cgggaggccg gtgagcgaag cctcgagacc
      121 gtacgacatg gactgcccgc atccggcctg ggcgcaggag gacccatcgg actggtggct
      181 ggctctccgc gaggtgatcg ccgagttgat ggcgagcgcc cgcctcgcgc cggccgacgt
      241 cgcggccatc gcattctcga gccaggtcga cggggtcgtc gccgtcgacg aaacgggggc
      301 ggtcctccat ccggcgatca tctggctcga ccggcgggcc gaggcgcaga cggccgcgct
      361 cggtcgccgg atcccgtcgc gtgagctctt cgatcgctcc gggctgaacc tcgactcgag
      421 ccacgtggcc ccgaagatcc tgtggctgcg cgaccacgct ccgaaggcat acgcacggac
      481 ggccgtcttc cacctgcccg ggagctgggc cgtggaacgg ctgaccggca cggcggtggt
      541 tgaccattcc aacgcctcgt ccacgttgct ctacgacgtg cgtcgtcgcg actggtcgga
      601 cacgctgctg gacgccgccg gcctcgatcg cagccggctg ccgcgagtgg ccgattccac
      661 ggacgtggcc ggaacggtca cgccggccgc tgccgctgcg ctcgggctga ccgtcgagtg
      721 ccgggtggcc gtaggctccg gcgacgagca tgccgcgtgc cttggcgccg gcgtcctgcg
      781 cgcgggcccg atctgcgaca tcgcgggcac ggccgaaccg gtcgcggtcg cctcggacac
      841 gcccgtcttc gaccggaccg gcctggtcga aacgcacgcg cacgccgacc cgcggagctg
      901 gttgatcgag aacccggggt tcgtgtccgg cgggagcgtg cgctggttca acgacatcgt
      961 gggccggacg accttcgagg agctgtgccg gctcgcagac gacgtcccgc ccggctccga
     1021 cggcgcgatc ttcgtcccgg cgctgtccgg cgccatgacg ccccgctgga acggccgggc
     1081 tcgcgccgtg ttccacggcc tgtcgatggc ccatggtctt ggccacctgg cgcgggcggt
     1141 cttcgaaggc tgcacgttcg ggcttcgtga catcgtcgat cgattcgccg agctcggtct
     1201 cggcgacggg gagatccggg tcgttggtgg cggctcgcgg agcgacctgc tgctgcagat
     1261 gaaggccgac gtcaccggca agcccgtgcg acgggtcatg cagccggagg cgacggcgct
     1321 cggggcgacg atgctggcgg cggtcgtcgc cgggaccttc gactcgctcg acgccgcggc
     1381 ggccgaggtc gtccgcctcg aggacagggt ctacgagccg gatccatcga cccggcgcgc
     1441 gtatgaggac gcctatcgca cctatcgtga cctgtacgac gcggtcgagc cgctgttcga
     1501 ccgggaggcc gccgttgtca gctgagtcca ccatccgggc gcccctcccc gacccgaccg
     1561 atctcgccgc gcttcgggcg ctcctcgacg aggcggaccc ggggcgcgtg ctccacccgg
     1621 tcggcatggg cgtggtccgg atcgggccgg atgccctggc cgaggtgccg gagatcgtgg
     1681 gctcgctgcg ccggtccggc ccgatcgcgg tcctcaccga ttcgaccccg atgcggcgcg
     1741 gatcggccga cctcaagccg tcgctcgtgg ctcgactgga acggctcggc gaggtccgct
     1801 ggacgatcct gggccgcgac cgcgccgagc tccacgccga cgacgacgcg ctcgccgagg
     1861 ccgaccgggc gatcgccggc gccggatgcg tcgtgagcat cggctcgggc acgatcacgg
     1921 acatcgccaa ggacgccacc catcgggccg gcggactgcc gctgctggtc gtccagaccg
     1981 ccgtctcggt gaacgccttc tccgacgaca tggcggtcct catccgcaac ggcgtcaagc
     2041 gaacgacacc ctcgcggtgg ccggatgccc tcgtcatcga cctgccggtc atcgccgacg
     2101 cgccgccggc catgaaccgc gccgggttcg gcgagctggc ctcgatgttc acggcgcccg
     2161 ccgactggta cctcgccggc gccctcggca tggacgaggc gtggcaccct gcccccgtcg
     2221 cgttgttccg gcgtgagggc gaagccctgc tggccgccgc ggacgcggtc cgtgcccatg
     2281 aggccggcgc gctggccctg ctcgcgcggc tgatgacgct gtcgggcatg gcgctcgggg
     2341 tcgccgggtc gacggcgccg atctcgggca ccgagcacat cgtcagtcac ctgctcgaca
     2401 tggatgccga gggggccggc cggccgttgg ccttccatgg cgcccaggtc ggcgtggctg
     2461 cgatcgtcgt ggcgctggcg tgggccgaga ccctcgacac gttcgatccc gcgaacgtcg
     2521 acgtcgatgc cgcctacccg gatggtcacg acgtagagtc ggaggtccgg gccgcattcg
     2581 gaccgctcga tcgcacgggc gcggtcgcgg acgagtgctg gcgcgacgtg gagcgcaagc
     2641 tcgagcggtg gcgcgcggct cgcccaaggt tcgaggcctt cctcgccgac tggccccgcc
     2701 accgagccgc tctgcgcgac ctggtcatcg acccggcgac cct
//
LOCUS       DATDDI010000810         2400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_392170, whole genome shotgun sequence.
ACCESSION   DATDDI010000810 DATDDI010000000
VERSION     DATDDI010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392170"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..237
                     /locus_tag="VIU37_11755"
     tRNA            163..237
                     /locus_tag="VIU37_11755"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:195..197,aa:Met,seq:cat)
     gene            complement(294..1136)
                     /locus_tag="VIU37_11760"
     CDS             complement(294..1136)
                     /locus_tag="VIU37_11760"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014681.1"
                     /translation="MTATTRRRGRSGDGLGPATRDGLLVAWRNLKRIPRIPELAIFAI
                     LQSIMFVLLFAFVFGGAIPIPGYAGNPNAYREFLMPGIFGQTIVFAAATTAIGMADDT
                     HKGIIDRFRSLPMARSAVLTGRALSDVVYNGGILIVLILSGLAVGWTVHTGIGSLFAG
                     VALMLLFAFAMSWLGIWMGLNVPSVEVAQQVIFTVLFPITFVSNVFVPPQTLPDWLQP
                     IAEWNPTSTLTGALRQLWGNPNPFASDSFPSQNPVLVTLVWVVVIIAVFGPLGVRRYR
                     SMNR"
     gene            complement(1133..2107)
                     /locus_tag="VIU37_11765"
     CDS             complement(1133..2107)
                     /locus_tag="VIU37_11765"
                     /inference="COORDINATES: protein motif:HMM:TIGR01188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6014682.1"
                     /translation="MNAITAEGLVKVYRSRKNEVRALDGLDLEVAEGTVLGLLGPNGA
                     GKTTAVRVLATLLRPDAGHATVAGLDVVHDAERIRHLIGLSGQYAAVDENLTGRENLF
                     LFGRLYQLSTAESHRRADELLDQFDLSDAADRTAKTYSGGMRRRLDLGSALIGRPRLL
                     FLDEPTTGLDPRSRLGMWDVIRNLVREGTTLLLTTQYLEEADELADAIAVVDHGRIIA
                     RGTADELKSQVGGERIEVVVHGREAMLKAIEVLARTAGEPPVVDEHTRRLTVPAHGGA
                     ARLVQVVRDLDEAGIGIDDIGLRRPTLDDVFLSLTGHVSEAPTTESAA"
     gene            complement(2206..>2400)
                     /locus_tag="VIU37_11770"
     CDS             complement(2206..>2400)
                     /locus_tag="VIU37_11770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014683.1"
                     /translation="GNIFAGEFLAPQMYFFRPAPGWSQYRTPIDGYYQCGSGTHPGGC
                     VMGAPGKLAAQRILKDLGRA"
BASE COUNT          380 a          817 c          846 g          357 t
ORIGIN      
        1 tcctggccgg cgtcgacatc ctgtacccgc tctacgtgtt cagcgcggtg atggtcacga
       61 gtctcgtcgc cgggctgctg atcggtggcc ggcggctacg ctcctgaccc gaccgagggc
      121 gtcgcgtttg accgaatcgc cctcggagga ctaccgtacg cgggcggggt ggagcagcgg
      181 cagctcgtcg ggctcataac ccgaaggtca ctggttcgaa tccagtcccc gcaaccaatc
      241 agcgtgcacc gcgaaccccg ggtccgaccg cccggggttc ttcattgtcc ggctcagcgg
      301 ttcatcgacc gatagcggcg caccccgagc ggcccgaaga ccgcgatgat cacgaccacc
      361 cagacgagcg tcacgaggac cgggttctgc gacgggaagc tgtcggacgc gaatgggttc
      421 ggattgcccc acagctggcg gagcgcgccc gtgagcgtgc tcgtcgggtt ccattcggcg
      481 atcggctgga gccagtcggg cagcgtctgc ggggggacga agacattgct cacgaacgtg
      541 atcgggaaga gcaccgtgaa gatcacctgc tgggcgacct cgacggaggg cacgttcagg
      601 cccatccaga tccccagcca cgacatggcg aatgcgaaca gcagcatcag ggcgacgccc
      661 gcgaacagcg acccgatccc ggtgtggacc gtccagccca cggccaggcc ggacaggatc
      721 aggacgatca ggatgccgcc gttgtagacg acgtccgaca gggcccgacc ggtcaggacc
      781 gccgagcggg ccatcggcag cgagcggaag cggtcgatga tccccttgtg cgtgtcgtcg
      841 gccatgccga tcgccgtcgt cgcggccgcg aacacgatcg tctggccgaa gatccccggc
      901 atcaggaact cgcggtaggc attcgggttg cccgcgtagc ccgggatcgg gatggccccg
      961 ccgaacacga acgcgaacag cagcacgaac atgatcgact ggaggatcgc gaagatcgcc
     1021 agctccggga tccgagggat tcgcttgagg ttgcgccagg cgaccagcag tccgtcgcgg
     1081 gtcgccggcc cgaggccgtc gcccgaccgg ccccgacgcc gcgtcgtcgc cgtcatgccg
     1141 cggactccgt ggtcggcgct tccgagacgt gaccggtcag gctgaggaag acatcgtcga
     1201 gcgtcggccg gcgcaggccg atgtcgtcga tcccgatgcc ggcttcgtcg aggtcgcgaa
     1261 cgacctggac cagccgggcc gcgccaccat gggccgggac cgtcagacgg cgcgtgtgct
     1321 cgtcgacgac cggcggttcg cccgccgtcc gggcgagcac ctcgatcgcc ttgagcatcg
     1381 cctcgcgacc gtggacgacg acttcgatcc gctcgccgcc gacctgcgac ttcagctcgt
     1441 cggcggtgcc gcgggcgatg atccggccgt ggtcgacgac ggcgatcgcg tcggccagct
     1501 cgtcggcctc ctcgaggtac tgcgtcgtca gcagcaacgt cgtgccttcg cggaccaggt
     1561 tgcggatcac atcccacatg cccagccggc tccgcggatc gagacccgtc gtcggttcgt
     1621 cgaggaacag gagcctggga cggccgatca gggcgctccc caggtcgagc cgtcgccgca
     1681 tgccgcccga gtaggtcttg gcggtccgat cggcggcgtc ggacaggtcg aactggtcga
     1741 gcagctcgtc ggcacgccgg tgcgactcgg cggtcgacag ctggtacagg cggccgaaca
     1801 ggaacaggtt ctcgcgaccg gtcaggttct cgtcgactgc cgcgtactga ccggacagcc
     1861 cgatgaggtg gcggatccgt tcggcgtcgt gcacgacgtc gaggccggcc acggtcgcgt
     1921 ggcccgcgtc cgggcgcaga agcgttgcga ggacgcgcac ggccgtcgtc ttgcccgcgc
     1981 cgttgggccc gagcaggccc aggacggtcc cttcggcgac ctcgaggtcg aggccgtcga
     2041 gggcgcgaac ctcgttcttg cgcgaccggt agaccttgac caggccctcg gcggtgatgg
     2101 cgttcatggc aatgcctcgc acgggggctc gcttcgatgg ggagccacag tatagagacc
     2161 gtgtgtcaac ccccgactca tcggtcgggg atccgccgcc agcgatcagg cccggccgag
     2221 gtccttcagg atccgctggg cggccagctt gccgggcgcg cccatgacgc agccgcccgg
     2281 gtgcgttccc gagccgcact ggtagtaccc gtcgatcggg gtgcggtact ggctccagcc
     2341 tggcgccggg cggaagaagt acatctgcgg cgcgaggaac tcgccggcga agatattgcc
//
LOCUS       DATDDI010000811         2392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_537554, whole genome shotgun sequence.
ACCESSION   DATDDI010000811 DATDDI010000000
VERSION     DATDDI010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537554"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..643)
                     /locus_tag="VIU37_11775"
     CDS             complement(<1..643)
                     /locus_tag="VIU37_11775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014684.1"
                     /translation="MTEPDQIEFHELVGAPEGRQPGRSPSPSVPVRIGIVAGSAILFV
                     IGAVAAMGASPAPSGAAASPDGGTTTPANPVAPGLPFDGMMPKAGIMGGPGMDLRGGF
                     RLGFRDITISAIDGANLSLKTDDGWTRTIAVGSSTTITKGGQTIALGDLAVGDQIVFG
                     ETKASDGSYTIDQIRVVMPVIGGQVTAVGTDSITVDQKGGGSATIHVSSGTTYE"
     gene            complement(770..2206)
                     /locus_tag="VIU37_11780"
     CDS             complement(770..2206)
                     /locus_tag="VIU37_11780"
                     /inference="COORDINATES: protein motif:HMM:NF013918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin reductase family protein"
                     /protein_id="HEY6014685.1"
                     /translation="MPDQPMLLRAATAHARRAEAAAEASPMRPRPVPLPRTWSVTALE
                     IVLVLIANGALILAMWIRHGGLDQASTLGGILTGIGQLTALYGTYLALIQLVLMSRSP
                     WLDQAFGMDRLAAAHRWIGFATVWLLLGHGVFTTVGYAIGDRQNPVAEFLTLVTTYPY
                     VLMATASGGLFAAVAISSIRMARRKLSYETWYGIHLYAYLAIALGFLHQLFVGTDFIH
                     DPVAVAYWVALYVAAAGLVLAHRVLDPIRLNLRHRLRVASVVPEGPGVFSIYVTGRDL
                     DRLAVRSGQYFVWRFLTRDGWWRGHPFSISSAPNGSWLRITVKELGDWSTRLQRMPVG
                     TRVFVEGPYGILTGLKRTRQRVLLIAGGIGITPMRALLEALPARPGDLTLLYRVRQET
                     DIVFRTELEALARIRGAEVQYLPGRRQPFPSDIDPLGPAGLQALVPDVRERDVYVCGP
                     VAMMQHVESSLRRLGLPSRQLHVERFAY"
BASE COUNT          377 a          821 c          868 g          326 t
ORIGIN      
        1 cctcataggt cgtgccggag ctgacgtgga tcgtcgcact cccgccgccc ttctggtcga
       61 ccgtgatcga gtcggtgccg accgccgtga cctggccccc gatcacgggc atgaccacgc
      121 ggatctggtc gatcgtgtac gacccgtcgc tcgccttggt ctcgccgaag acgatctggt
      181 cgccgaccgc gaggtcgccg agcgcgatgg tctggccgcc cttggtgatc gtcgtcgaac
      241 tgccgaccgc gatcgtgcgg gtccagccgt cgtcggtctt gagcgacagg ttcgcgccgt
      301 cgatcgcgct gatcgtgatg tcgcggaacc cgagcctgaa cccaccgcgc aggtccatgc
      361 ccgggccgcc catgatcccg gccttcggca tcatgccgtc gaacggcagg ccgggcgcca
      421 ccgggttggc gggtgtggtc gtgcccccgt cgggactggc agcggcaccg gacggcgcgg
      481 gcgaggcgcc catcgcggcc accgcgccga tcacgaacag gatggccgaa ccggccacga
      541 tgccgatccg taccggaacc gagggtgacg gcgagcggcc cggctgccgg ccctccggcg
      601 cgccgacgag ctcgtggaat tcgatctgat caggttcggt catcgatgac ctccgtgaag
      661 acgatgtgcc gcggtcgcgg tatgtcgtgg ctcgcccgag ggcgagtcgt agcgatcact
      721 gtgtcacgcg attcttcgag cattctgaaa ggctcgacag gatcgcccgt cagtaggcga
      781 accgctcaac gtggagctgg cggctgggca ggccgagccg gcgcaacgac gactcgacgt
      841 gttgcatcat cgcgacgggc ccgcacacgt agacgtcgcg ctcgcggacg tccggcacca
      901 gtgcctgcag cccggccggc cccagcggat cgatgtccga cgggaagggc tgccggcgtc
      961 ccggcaggta ctggacctcc gctccgcgga tccgggccag cgcctcgagc tcggtccgga
     1021 acacgatgtc ggtctcctgc cggacccggt agagcagggt caggtcgccg ggccgggccg
     1081 gcagcgcctc gaggagggcc cgcatcggcg tgatcccgat cccgccggcg atcagcagca
     1141 cccgctgccg ggtccgcttc aggcccgtca ggatcccgta cggcccctcg acgaagaccc
     1201 gggtgccgac cggcatgcgc tggagccgcg tggaccagtc gcccagctcc ttgaccgtga
     1261 tccggagcca cgagccgttc ggcgccgaag agatcgagaa cggatggccg cgccaccagc
     1321 cgtcgcgcgt caggaagcgc cacacgaagt actgcccgga tcggacggcc agccggtcga
     1381 ggtcacgacc cgtgacgtag atcgagaaca cgcccggacc ctccgggacc acgctcgcga
     1441 cccgcagccg gtggcggagg ttgagccgga tcgggtcgag gacgcgatgg gcaagcacga
     1501 gcccggccgc cgcgacgtac agggccaccc agtaggccac cgcgaccgga tcgtggatga
     1561 agtcggtccc gacgaacagc tggtggagga aaccgagcgc gatcgcgagg tacgcgtaga
     1621 ggtggatgcc gtaccacgtc tcgtacgaca gcttccggcg ggccatccgg atcgagctga
     1681 tcgcgacggc cgcgaacagt ccgccgctgg ccgtcgccat caggacgtac ggataggtcg
     1741 tgacgagggt caggaactcg gccaccgggt tctggcggtc gccgatggcg tagccgacgg
     1801 tggtgaagac cccgtggccg agcagcagcc agacggtcgc gaagccgatc cagcgatggg
     1861 cggccgcaag gcggtccatg ccgaaggcct ggtcgagcca ggggctccgc gacatcagga
     1921 ccagctggat cagcgcgagg taggtgccgt agagcgccgt gagctggccg atcccggtga
     1981 ggatgccgcc gagcgtcgag gcctggtcca gcccgccgtg gcggatccac atcgccagga
     2041 tgagcgcccc gttcgcgatc aggacgagga cgatctcgag cgcggtcacc gaccaggtgc
     2101 gcggcaacgg gaccgggcgc gggcgcatgg gcgacgcctc ggcggcggcc tcggcgcgcc
     2161 gcgcgtgcgc ggtggcggcg cgcaggagca tcggctggtc gggcatgcca ccagcctcgc
     2221 gggagccgct gagacgatcc tgagaaccgg gccggcggcg tggttctcat cgtgtcctca
     2281 gacgagccgt cgagactggc cacgatcgac acgtcgatcg gcgctcggag gtccgcgatg
     2341 ttcccacgac ggggcgcgat cgccctggtg accacggcca tggccctggt gc
//
LOCUS       DATDDI010000812         1921 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_350585, whole genome shotgun sequence.
ACCESSION   DATDDI010000812 DATDDI010000000
VERSION     DATDDI010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350585"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1400)
                     /locus_tag="VIU37_11785"
     CDS             complement(<1..1400)
                     /locus_tag="VIU37_11785"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014686.1"
                     /translation="MDRRAAYVLLVMFGAGVFLAGLELMVTAVALPSILANLAGTTSA
                     TAWVELRKASWIINGYLLVYILVMPLAGRLADLLGTRRLFMAALAIFVLGSALAGAAQ
                     NLDQLIAARVVQALGGGVLVPVGTAAASHLFDGPARPRALGVIGALTFLGMAAGPVVG
                     AAILGSVHAETALATIGAGPNDPLSALVSSAWRWVFYLNVPIGLIALILAGAASAAWE
                     TPHHPGRLDVLGASWFGLALVAGLVGLTLVGTRQIAESGVDPTVVTAGLLGVAAVASV
                     VAVVRGLRVEDPFLDPRLFRSVPFSSAALVSLLTGYGFATAIIGGAVFVDRVLYGGPD
                     EQRIALGALAGATALGALASGFIVRVISLRLVTLAGLMLSVAGFAAMATWRSGTPIES
                     VALALGAFGFGFGLTVTPRSTAAVEAAGRRAFGMASAVVTVARMIGMAVGLAILTAYG
                     STTIDRLADQIYATSES"
     gene            complement(1472..>1921)
                     /locus_tag="VIU37_11790"
     CDS             complement(1472..>1921)
                     /locus_tag="VIU37_11790"
                     /inference="COORDINATES: protein motif:HMM:NF025343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HEY6014687.1"
                     /translation="YTYFASKDELIRSSILAANKEETDAILRDMQAAGTFRERFHRAL
                     AGWHAYTFEVPGVAAFLADVWAEAARRPLIRDLVARRRERVVMVSSILLREGVAVGEI
                     DPDVDVTLMAHLFANLLDGMILESLEDNGEIRLSEVVRRANAFLDMA"
BASE COUNT          316 a          702 c          684 g          219 t
ORIGIN      
        1 gattcggacg tggcgtagat ctggtcggcg agtcgatcga tcgtcgtcga gccgtaggcg
       61 gtcaggatcg ccagcccgac ggccatgccg atcatccggg ccacggtcac gacggccgac
      121 gccatgccga acgcacgccg gccggccgcc tccactgccg ccgtcgatcg cggcgtcacc
      181 gtcagcccga agccgaaccc gaaggcgccg agcgccaggg cgaccgattc gatgggcgtc
      241 ccggatcgcc aggtcgccat ggcggcaaag ccggccacgc tcagcatcag cccggccagc
      301 gtcacgagtc ggagcgagat cacccgcacg atgaagccgg aggcgagcgc acccagggcc
      361 gtcgcgcccg cgagcgcccc gagtgcgatc cgctgctcgt ccggcccgcc atacagcacg
      421 cgatcgacga agacggcccc gccgatgatc gcggtcgcga acccgtagcc ggtcagcagc
      481 gacacgaggg cggcagagct gaacggcacg ctccggaaga gacgcggatc caggaacggg
      541 tcctcaacgc ggagcccgcg aacgacggcg acgaccgacg cgaccgcggc gacgccgagc
      601 aacccggcgg tcacgacggt cgggtccacg ccgctctcgg cgatctgccg cgtgcccacg
      661 agcgtcagcc cgacgagccc ggcgacgagc gccagcccga accagctcgc cccgaggacg
      721 tcgaggcggc cgggatggtg cggcgtctcc caggcggccg acgccgctcc ggcaaggatc
      781 agcgcgatca ggccgatcgg gacgttcagg tagaacaccc atcgccaggc tgacgagacc
      841 agcgcgctca acgggtcgtt gggaccggcg ccgatggtcg ccagcgccgt ctcggcgtgc
      901 accgagccca ggatcgcggc gccgacgacc ggcccggcgg ccatcccgag gaaggtcagc
      961 gcgccgatca ccccgagcgc ccggggccgg gccgggccgt cgaacaggtg cgacgccgcc
     1021 gcggtcccga ccggcacgag cacgccgccg ccgagcgcct gcaccacccg cgcggcgatc
     1081 aactggtcga ggttctgggc ggccccggcg agcgcggacc cgagcacgaa gatcgcgagg
     1141 gcggccatga acagccggcg ggtgcccagc aggtcggcca gcctgcccgc gagcggcatg
     1201 accaggatgt acaccagcag gtagccgttg atgatccagc tcgcctttcg gagctcgacc
     1261 caggcggtgg cgctggtggt gccggcgagg ttggcgagga tggacggcag cgcgaccgct
     1321 gtgaccatca attcgagccc ggccaggaag acccccgcac cgaacatgac cagcagcacg
     1381 tacgccgcgc gtcgatccat ggcggggagt gtagttgcgg cgggccgccc ggcggccccg
     1441 acggaccccg ttgccctgtc cgcgccgcgc gtcaggccat gtcgaggaag gcgttcgcgc
     1501 gtcggaccac ctcgctcagc cggatctcgc cgttgtcctc gaggctctcg aggatcatgc
     1561 cgtcgaggag gttcgcgaag aggtgggcca tgagcgtcac gtccacgtcc gggtcgatct
     1621 cgccgacggc cacgccctct cgcagcagga tcgaggagac catcacgacc cgctcccgtc
     1681 ggcgtgccac caggtcgcgg atcagcgggc ggcgcgcggc ctcggcccaa acgtcggcca
     1741 ggaacgccgc cacgccgggc acctcgaacg tgtaggcgtg ccaccccgcc agcgcccggt
     1801 ggaatcgctc gcggaacgtg ccggcggcct gcatgtcacg gaggatggcg tcggtctcct
     1861 ccttgttcgc ggcgaggatg ctcgaccgga tcagttcgtc cttgctggcg aagtaggtgt
     1921 a
//
LOCUS       DATDDI010000813         2067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_620870, whole genome shotgun sequence.
ACCESSION   DATDDI010000813 DATDDI010000000
VERSION     DATDDI010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620870"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VIU37_11795"
     CDS             complement(<1..325)
                     /locus_tag="VIU37_11795"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEY6014688.1"
                     /translation="MNKVLLAGRLTHDPEMRALASGKHVTQFSVATTEYAGNGKERPE
                     YHNIVTWDRLAEICGRYLGKGQQVAIEGRIQTRTWDDDKGARHWKTEIVAGSVEMLSG
                     RKKKDY"
     gene            488..1051
                     /locus_tag="VIU37_11800"
     CDS             488..1051
                     /locus_tag="VIU37_11800"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY6014689.1"
                     /translation="MASLEPPDARDAIRPLVRVRQIREFTDEAPTDAQLEAITDAARW
                     TGSSTNTQPWRFIVIRDRDVLQQIHDGGLPQTRGLKTAPSAVAIVLPDDDQPISRAYD
                     EGRAAERILIAAELVGLRAGIAWIRKDVRELVSGLLGLPSDRYVRTIVMIGHPTEAAL
                     APKNPPGKARLPRGETVFAERWPAGQG"
     gene            1306..>2067
                     /locus_tag="VIU37_11805"
     CDS             1306..>2067
                     /locus_tag="VIU37_11805"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF012912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEY6014690.1"
                     /translation="MPATVIVGLQWGDEGKGKTTDFLAEQVGMVVRYQGGDNAGHTVV
                     WGDQVFKLHLVPSGVLYPHITSVIGNGVVVNPATLIAELDMLVGRGIDVSKVRVSRSA
                     HVLMPYHVALDRANETRLGGDKVGTTGRGIGPAYADRAYRIGLRMEDLLDRAVLQARI
                     ERVLPDKNLILASLGAETFEVATLVDQSAAWGERLASYLDDATWLVQRALAAGEHVLL
                     EGAQGTLLDLDHGSYPFVTSSNPVAGGAATGGGIGP"
BASE COUNT          291 a          750 c          725 g          301 t
ORIGIN      
        1 cgtagtcctt cttcttgcga cccgagagca tctcgacgct gccggcgacg atctcggtct
       61 tccagtggcg ggcgcccttg tcgtcgtccc aggtccgggt ctggatccgg ccttcgatcg
      121 cgacttgctg gcccttgccg aggtagcggc cgcagatctc cgcgaggcgg tcccaggtga
      181 cgatgttgtg gtactccggc cgctccttgc cgttgccggc gtattcggtc gtggcgacgc
      241 tgaactgggt gacgtgcttg ccggaggcga gcgcccgcat ctccgggtcg tgcgtcagcc
      301 tgccggcgag gaggaccttg ttcacggtcc atggctcctt cgatggccgg ccgacgggac
      361 acgggccgac cctgcgtgcg gcggatggcg gaatgccgtc accctagcgg ggcccgcttc
      421 gccgccagcc atccggtgct tatccggtgc cacgccatcg attccctggg ggtgccagac
      481 tggcgccatg gccagcctcg aaccgcctga tgcccgtgac gccatccggc cgcttgtccg
      541 cgtccggcag atccgcgagt tcaccgacga ggcgccgacg gacgcccagc tcgaggcgat
      601 caccgacgcc gctcgctgga ccggcagcag cacgaacacc cagccgtggc gattcatcgt
      661 cattcgcgac cgcgacgtcc tccagcaaat ccacgatggc ggcctgccgc agacccgcgg
      721 gctgaagacc gccccgtcgg cggtggcgat cgtcctgccg gatgacgacc agccgatctc
      781 gcgggcctac gacgaggggc gcgcggccga gcggatcctc atcgccgcgg agctcgtcgg
      841 gctgcgagcc gggatcgcct ggatccggaa ggacgtgcgc gagctcgtct cgggcctcct
      901 cgggctcccg agcgaccgat acgtccgaac gatcgtcatg atcggccacc cgaccgaggc
      961 cgcgctcgcg ccgaagaacc cgcccggcaa ggctcgtctg ccgcgcggcg agaccgtctt
     1021 cgccgagcgc tggccagcgg gccagggata ggccgacgct ccgaggaagg ccagcagggc
     1081 gggccgtcga ggccgctata ctcggccggt gcccgggccg cgcgtcgagg cggccccgac
     1141 aggaggtcct gcgatcgcgc gagaggggcg cgtcgtccgt cccgtgagac ggccgagcga
     1201 ccggcagaac cccagccgct tcggcggccg gccccgacgg gagagaacta tccaggtccc
     1261 gagccaccag gcccgggccc ttttcttttc ccggcgggcc gcctgatgcc ggccacggtc
     1321 atcgtcgggc tccagtgggg cgacgagggc aaaggcaaga cgaccgactt cctcgccgag
     1381 caggtcggga tggtcgtccg ctaccagggc ggcgacaacg ccggccacac ggtcgtctgg
     1441 ggcgatcagg tcttcaagct ccatctcgtg ccgtcgggcg tgctgtaccc ccacatcacc
     1501 tcggtcatcg gcaacggcgt cgtggtgaac ccggcgacgc tgatcgccga gctggacatg
     1561 ctggtcggac gcgggatcga cgtctcgaag gtccgggtga gccggagcgc ccacgtcctc
     1621 atgccgtacc acgtggcgct cgacagggcc aacgagacgc gactcggcgg cgacaaggtc
     1681 gggacgaccg ggcgcgggat cgggcccgcc tacgccgatc gggcctaccg catcggactc
     1741 cggatggagg acctcctcga ccgggccgtc ctgcaggccc ggatcgagcg cgtcctgccg
     1801 gacaagaacc tcatcctggc ctcgctcggg gccgagacct tcgaggtcgc gaccctcgtc
     1861 gaccagtctg ccgcctgggg cgagcggctg gcgagctacc tcgacgatgc gacgtggctc
     1921 gtccagcgag ccctcgcggc gggcgagcac gtcctgctcg agggcgccca gggcaccctc
     1981 ctcgatctcg atcacggcag ctacccgttc gtgacctcgt cgaaccccgt cgccggcggg
     2041 gcggcgaccg gcggcggcat cgggccg
//
LOCUS       DATDDI010000814         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_267620, whole genome shotgun sequence.
ACCESSION   DATDDI010000814 DATDDI010000000
VERSION     DATDDI010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267620"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1501)
                     /locus_tag="VIU37_11810"
     CDS             complement(<1..1501)
                     /locus_tag="VIU37_11810"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY6014691.1"
                     /translation="METLVDLVRVGAERFDRRPALLIRPFFRTRTWRYRDLGRIVPKA
                     AHVLQEAGVEQGDRVIVWAVNRPEWGIAFFAIAHLGGVSVPLDVRHTVDFGRKIVGQT
                     GAKLVIASHQTESSARELGIPMLFVETLADAARHAAPVPAAAVARDDLAEIVFTSGTT
                     GEPKGAMLSHGNLLASATTMMEVLSFSAKDRLLSVLPLSHLYEQVLGFMAPLVIGASI
                     VYPVSRQPAVLIRTFRDFGVTVLLIVPQGLRLLNGAIERKVDQAGKRATFERLHRWAR
                     RVPRPIKRLLFRSVLGQFGGRLHTIGVGASALDVEIAGRWTDMGVDVLQGYGATEMGP
                     VVSFTRPQRNVIGTVGEPIPGVEVHIADDGEILARGPGRFAGYWKNPEATAAAIDADG
                     WYHTGDLGAFTPEGMLTFRGRKKDMLALPDGQKVYAEDVEAILKEDRRVKDAAIVGWP
                     LGAGLKVHAILLLDDPADEDDVVAVANTKLAPHQQLRGSTVWPDDDLPRT"
BASE COUNT          219 a          583 c          540 g          225 t
ORIGIN      
        1 gggtccgcgg caggtcgtcg tcgggccaga ccgtggagcc acggagctgc tggtgcggcg
       61 cgagcttcgt gttcgcgacg gcgacgacgt cgtcctcgtc ggccgggtcg tcgagcagca
      121 ggatcgcgtg gaccttcagg cccgcgccga gcggccagcc gacgatcgcg gcgtccttga
      181 cgcgccggtc ctccttcagg atcgcctcga cgtcctcggc gtagaccttc tggccgtcgg
      241 gcagcgcgag catgtccttc ttgcgccctc ggaacgtgag catgccctcc ggcgtgaagg
      301 ccccgaggtc gccggtgtgg taccagccgt ccgcgtcgat cgccgcggcc gtcgcctcgg
      361 ggttcttcca gtagccggcg aagcggccgg gcccgcgcgc gaggatctcg ccgtcgtcgg
      421 cgatgtggac ctcgacgccg gggatcggct cgccgaccgt gccgatgacg ttgcgctgcg
      481 ggcgcgtgaa gctgacgacg ggccccatct cggtcgcgcc gtagccctgg aggacgtcga
      541 cgcccatgtc cgtccagcgc ccggcgatct cgacgtcgag cgccgatgcg ccgaccccga
      601 tcgtgtgcag gcgcccaccg aactggccca ggacggaccg gaacagcagg cgcttgatgg
      661 gcctcgggac gcgccgggcc cagcggtgga gccgctcgaa ggtcgcccgc ttgccggcct
      721 ggtccacctt gcgctcgatc gccccgttga gcagccgcag cccctgtggg acaatcagga
      781 ggaccgtcac cccgaagtcg cggaacgtcc ggatcaggac agccggctgc cggctgaccg
      841 ggtagacgat gctcgcgccg atcacgagcg gcgccatgaa tccgagcacc tgctcgtaca
      901 ggtgggacaa cggcaggacc gacaggagcc gatccttcgc gctgaacgac aggacctcca
      961 tcatcgtcgt ggcgctcgcg agcaggttcc cgtggctgag catcgcgccc ttcggctcgc
     1021 cggtggtccc gctcgtgaac acgatctcgg ccaggtcgtc ccgcgcgacg gccgccgccg
     1081 gcaccggcgc tgcatgcctc gccgcgtccg ccagggtctc cacgaagagc atcgggatcc
     1141 cgagctcgcg cgccgaagac tccgtctggt ggctggcgat gaccagcttc gcgcccgtct
     1201 ggccgacgat cttgcgcccg aagtcgaccg tgtggcgcac gtccaggggc acggacacgc
     1261 caccgaggtg ggcgatcgcg aagaacgcga tcccccactc cggccggttg accgcccaca
     1321 cgatgacccg atcgccctgc tcgacgcccg cctcctgcag gacatgggcg gccttcggca
     1381 cgatgcggcc gaggtcgcga tagcgccacg tccgcgtgcg gaagaacggc cggatcaaca
     1441 gcgccggccg gcgatcgaag cgctccgccc ccacccggac aaggtcgacg agtgtctcca
     1501 ccgcccgttc cctttccgcc ttcctggccg gcgacgcgcg ctcagtcgac ctgcgccgcc
     1561 agcctcg
//
LOCUS       DATDDI010000815         1963 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_725270, whole genome shotgun sequence.
ACCESSION   DATDDI010000815 DATDDI010000000
VERSION     DATDDI010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_725270"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..539)
                     /locus_tag="VIU37_11815"
     CDS             complement(105..539)
                     /locus_tag="VIU37_11815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014692.1"
                     /translation="MAPAERSELAAWISPRQLALFESMHPADRRHGLDVVASLRAAGV
                     VSDDALIAGLLHDAGKGRTGVWPRVAYSLGDRYGRWVWRIVAIVPGFGPALERLRTHA
                     ERSAELAAAAGCSPRTVELIRNQEVPVDLEFGPLLRLADEAN"
     gene            complement(574..1242)
                     /locus_tag="VIU37_11820"
     CDS             complement(574..1242)
                     /locus_tag="VIU37_11820"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY6014693.1"
                     /translation="MNQDQLVAAIVVVAIMLLVGLPVHEFSHALAAYRLGDGTAKLFG
                     RLTLNPIAHFDPVGGVLLAVTFIGSAAAGSPFGFGWAKPTPVNPLNLLYGRRGEAIVA
                     AAGPLSNLVLAAAAAIPFRYLIANPELYAQVPLLYEVLSYFIQINIVLMLFNLVPVPP
                     LDGSKVMFAFMDRRTEYQIRPVLEQYGFLILIVLFFLPPGGSIGGKILIPILDAIFNF
                     LVGF"
     gene            complement(1318..>1963)
                     /locus_tag="VIU37_11825"
     CDS             complement(1318..>1963)
                     /locus_tag="VIU37_11825"
                     /inference="COORDINATES: protein motif:HMM:NF015648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEY6014694.1"
                     /translation="SGAATLLGALAAALFLGGLAFLAWATLRYLNQEYVLTNRRVIEV
                     AGVVNKRSTDSSLEKINDAILTQSIFGRMLGFGDLEVLTASEAGIERFRMIVNPIGFK
                     KAMMDAKHEYEQDMSGSFRAPGPPIRDVPTSAPEPAVAHEDVVPTEAEVVAPAPVVAA
                     AVQRAPEPAPLPPAAKANPDEITRTLANLADLRDRGAISVDEYESKKADLLGRL"
BASE COUNT          318 a          665 c          715 g          265 t
ORIGIN      
        1 gagcgggcca tcgaactccg cgacctggac catggtcatc gtctcgggcc ggcgaccctc
       61 gccgaaccgg accgccggac ccaccgggac cgcgccgatg ctcatcagtt cgcctcgtcg
      121 gccagccgca ggagcgggcc gaactcgagg tcgaccggca cctcctgatt gcggatcagc
      181 tcgacggtcc ggggcgagca gcccgccgcg gccgccagct cggccgaacg ctcggcgtgc
      241 gtgcgcagcc gctcgagcgc cggaccgaag ccgggcacga tcgccacgat ccgccagacc
      301 caccggccgt agcgatcgcc gagggagtag gccacgcgcg gccagacccc ggtccggccc
      361 ttgccggcgt cgtgcaacag gccggcgatc agcgcgtcgt ccgagacgac gccggcggcg
      421 cgcagtgacg ccacgacgtc gaggccatgg cggcggtcgg ccggatgcat cgattcgaac
      481 aacgccagct ggcgggggct gatccaggcg gcgagctccg agcgttcggc tggggccacg
      541 gtggctcgca ggtgcgcccg gaaccgccgg accttagaag cccaccagga agttgaagat
      601 cgcatcgagg atcggaatga ggatctttcc gccgatcgag ccgcccggtg gcaggaagaa
      661 caggacgatg aggatgagga agccgtactg ctcgagcacg gggcggatct ggtactcggt
      721 ccggcgatcc atgaacgcga acatgacctt ggagccgtcg agcggcggca ccgggaccag
      781 gttgaacagc atcagcacga tgttgatctg gatgaagtag ctcaggacct cgtagagcag
      841 cgggacctgc gcatacagct cggggttggc gatcaggtag cggaacggga tcgccgccgc
      901 cgccgcgagc acgaggttgg acagcggacc ggccgccgcc acgatcgcct cgccgcgccg
      961 cccgtacagc aggttgagcg gattgaccgg cgtcggcttc gcccagccga acccgaacgg
     1021 ggagccggct gccgccgagc cgatgaacgt cacggcaagg agcaccccgc cgaccgggtc
     1081 gaagtgggcg atcgggttga gcgtcagccg cccgaacagc ttggccgtgc cgtcgccgag
     1141 acggtacgcc gcgagggcat ggctgaactc gtggacgggc agtccgacga gcagcatgat
     1201 cgcgacgacg acgatggcgg cgacgagttg gtcctggttc acgcggcacc tacgctgctg
     1261 agggtcccgc gtatggtagc cgcgctcagc ctcccgggcg ggccggcgtc gacatcccta
     1321 cagccggccg agcagatccg ccttcttcga ctcgtactcg tcgaccgaga tggcgccccg
     1381 atcgcggagg tcggcgagat tggccagggt cctggtgatc tcgtcggggt tggccttcgc
     1441 cgcgggcggg agtggcgcgg gctcgggcgc gcgctgcacc gccgcggcga ccacgggtgc
     1501 cggggccacg acctcggctt cggtcggcac cacgtcctcg tgcgccaccg ccggctcggg
     1561 cgcactggtc gggacgtcgc ggatcggcgg acccggggcc cggaacgagc cggacatgtc
     1621 ctgctcgtac tcgtgcttcg cgtccatcat cgccttcttg aagccgatcg ggttgacgat
     1681 catccggaag cgctcgatgc cggcctccga cgcggtcagg acctcgagat cgccgaaccc
     1741 gagcatccgc ccgaagatcg actgggtcag gatggcgtcg ttgatcttct cgagcgagct
     1801 gtcggtggag cgcttgttga cgacgccggc cacctcgatg acccgccggt tggtcaggac
     1861 gtactcctgg ttgaggtagc gcagggtggc ccaggcgagg aaggcgaggc cgcccaggaa
     1921 cagggccgcc gccagcgcgc cgaggagggt cgccgcgccg ctt
//
LOCUS       DATDDI010000816         2732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_662806, whole genome shotgun sequence.
ACCESSION   DATDDI010000816 DATDDI010000000
VERSION     DATDDI010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662806"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VIU37_11830"
     CDS             <1..546
                     /locus_tag="VIU37_11830"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6014695.1"
                     /translation="AVVDLPIVLPPAVAGLALLLVFGRRGLLATPLEVLGVSIPFTTI
                     AVVFAQTFVSAPFFIRSARTGLAGVDRDLEDAARVDGASELQLFRAVTVPLAGAALAA
                     GLVMSWARALGEFGATIMFAGNVTGRTQTLPLVVYSEFQGGDLDQSIAAATILVLAAF
                     GVLLAVRVLHWGRVFDARAAA"
     gene            complement(555..2216)
                     /gene="betA"
                     /locus_tag="VIU37_11835"
     CDS             complement(555..2216)
                     /gene="betA"
                     /locus_tag="VIU37_11835"
                     /EC_number="1.1.99.1"
                     /inference="COORDINATES: protein motif:HMM:NF002550.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008812 - choline dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0019285 - glycine betaine biosynthetic
                     process from choline [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline dehydrogenase"
                     /protein_id="HEY6014696.1"
                     /translation="MAARYDFIIVGGGSAGCALANRLSADPSIRVLVLEAGRPDYPFD
                     VYIHMPAALTFPIGNRFYDWRYESEPEPFMNGRRIYHARGKVLGGSSSINGQIFQRGN
                     PLDYERWAADPGMETWDYAHCLPYFKRMENCLAAAPDDPFRGHEGPLVLERGPASSPL
                     FQAFFRSVQDAGYRLTDDVNGYRQEGFGAFDRNIHRGRRLSAARAYLHPVRNRRNLTV
                     RTRTLVTGIRFDGRRAIGVEIERQGGGAERLDAGEVILCGGSINSPQLLQLSGVGPAD
                     ELRALGIPVVADVPGVGAHLQDHLEVYIQYRSLQPVSMQPALQTWRRPFIGAAWLFLR
                     RGPGATNHFEGGGFVRSNDEVAYPNLMFHFLPLAVRYDGSSPKGGHGYQVHVGPMYSD
                     ARGSVKIVSPDPRVHPALRFNYLSTAQDRREWVEAVRVARRLLNQPGLAPYNGGETSP
                     GPSVETEDEILDWVRRDGETALHPSCTARMGVDEASVLDPLTMRVHGLEGLRVVDASS
                     MPYVTNGNIYAPVMMLAEKSADLILGNTPLPAEAVPFYRHRSGEG"
     gene            2250..>2732
                     /locus_tag="VIU37_11840"
     CDS             2250..>2732
                     /locus_tag="VIU37_11840"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEY6014697.1"
                     /translation="MTDVPIDYARFEALTFDCYGTLIDWETGILAGLRRALAGLDVQP
                     TDDDLLERYGRAESALEAGPYLRYREVLARGLGEVCRAYGVEPTEQAAAAFGPSVGDW
                     PAFPDSAAALARLQTRFRLGVITNCDDDLFAASHRRLGVAFDWVVTAQSVGSYKPNPR
                     N"
BASE COUNT          359 a          971 c          985 g          417 t
ORIGIN      
        1 gccgtggtcg accttccgat cgtgctcccg ccggcggtcg ccggccttgc gctgctcctc
       61 gtcttcggtc gccggggcct gctggcgacg ccgctggagg tgctcggcgt ctcgatcccg
      121 ttcacgacca tcgccgtcgt ctttgcccag acgttcgtgt cggcgccgtt cttcatccgt
      181 tcggcgcgga cgggcctggc gggcgtggat cgcgatctcg aggacgcggc acgcgtcgac
      241 ggcgcctccg agctccagtt gttccgggcc gtgaccgtgc cgctcgcagg agcggccctg
      301 gcggccgggc tcgtgatgtc gtgggcgcgg gcgctcggcg agttcggagc gacgatcatg
      361 ttcgcgggca atgtcacggg ccggacgcag acactcccgc tcgtcgtcta ctcggagttc
      421 cagggcggtg acctcgacca gtcgatcgcg gcggccacga tcctggtcct ggcggccttc
      481 ggcgtcctgc tcgccgtcag ggtcctccac tggggccggg tgttcgacgc gagggccgcg
      541 gcctgacccg cggctcagcc ctcgccggac cggtgccggt agaacggcac ggcctcggcg
      601 ggcagcggcg tgttgccgag gatcaggtcg gcggacttct cggccagcat catgaccggg
      661 gcgtagatgt tgccgttcgt gacgtacggc atggacgacg cgtcgacgac ccgcaggccc
      721 tcgagcccgt gcacccgcat cgtgagcggg tccaggaccg acgcctcgtc gacgcccatc
      781 cgggccgtgc acgacgggtg gagggcggtc tcgccgtcgc ggcggaccca gtcgaggatc
      841 tcgtcctccg tctcgacgga cggaccgggt gacgtctcgc cgccgttgta cggcgccagc
      901 ccgggctggt tgagcagccg ccgggcgacc cgcaccgcct cgacccattc gcgccggtcc
      961 tgcgcggtcg acaggtagtt gaagcggagc gccgggtgca ctcgcgggtc gggcgagacg
     1021 atcttcaccg aaccccgcgc gtcgctgtac atcggtccca cgtgcacctg gtagccgtgc
     1081 ccgcccttgg gcgaggagcc gtcgtaccgg acggcgagcg gcaggaaatg gaacatcagg
     1141 ttggggtacg cgacctcgtc gttgctgcgg acgaacccgc cgccttcgaa gtggttggtg
     1201 gccccgggcc cccggcggag gaagagccac gccgcgccga tgaacggccg ccgccatgtc
     1261 tgcagcgcgg gctgcatcga caccggctgg agggagcggt actggatgta gacctcgagg
     1321 tggtcctgga ggtgtgcgcc gacgccgggc acgtcggcca cgaccgggat cccgagcgcc
     1381 cggagctcgt ccgccggccc cacccccgac agctgcagca gctggggcga gttgatcgaa
     1441 ccgccgcaca ggatcacttc gccggcgtcg aggcgctcgg cgccgccgcc ctgacgctcg
     1501 atctccaccc cgatggcgcg ccggccgtcg aaccggatcc cggtcaccag cgtccgggtc
     1561 cggaccgtca ggttccggcg attgcgcacc ggatgcaggt acgcgcgcgc cgccgacagt
     1621 cgccggccgc ggtggatgtt ccggtcgaac gccccgaacc cctcctgccg gtagccgttg
     1681 acgtcgtcgg tcagccgata gccggcgtcc tggacggacc ggaagaatgc ctggaacaac
     1741 gggctgctcg ccggcccgcg ctcgagcacg agcgggcctt cgtgcccccg gaaggggtcg
     1801 tcgggcgccg ccgcgaggca gttctccatc cgcttgaagt acggcaggca gtgggcgtag
     1861 tcccaggtct ccatgcccgg atccgccgcc cagcgctcgt agtcgagcgg gttgccgcgc
     1921 tggaagatct ggccgttgat gctcgacgag ccgcctagga ccttgccccg cgcgtggtag
     1981 atgcgccggc cgttcatgaa cggctcgggc tcggattcgt agcgccaatc gtagaagcgg
     2041 ttgccgatcg ggaaggtgag cgccgccggc atgtggatgt acacgtcgaa cgggtagtcc
     2101 ggccggccgg cctccagcac cagcacccgg atcgagggat ccgccgacag ccggttggcg
     2161 agcgcgcagc cggcagatcc gccaccgacg atgatgaagt cgtatcgcgc cgccattggg
     2221 cagcgatgct agcaggaggg ctggcccagg tgaccgacgt tccgatcgac tacgccaggt
     2281 tcgaggcgct gacgttcgac tgctacggga cgctcatcga ctgggagacc gggatcctcg
     2341 ccgggctgcg ccgtgcgctg gccggcctgg acgtccagcc cacggacgac gacctgctcg
     2401 aacgctatgg ccgggccgag tccgccctcg aggccggacc gtacctgcgc taccgggagg
     2461 tcctcgcgcg cggcctcggc gaggtctgtc gcgcctacgg ggtcgagccg actgagcagg
     2521 cggcggcggc cttcgggccg tccgtcggcg actggccggc gttcccggat tccgcggccg
     2581 cgctcgcccg cctgcagacc cggttccgcc tcggcgtgat cacgaactgc gacgacgacc
     2641 tgttcgccgc gtcccatcgc cggctcggcg tcgccttcga ctgggtcgtc acggcccagt
     2701 cggtcgggag ctacaagccg aacccgcgca ac
//
LOCUS       DATDDI010000817         4539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_392505, whole genome shotgun sequence.
ACCESSION   DATDDI010000817 DATDDI010000000
VERSION     DATDDI010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4539
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392505"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..989)
                     /locus_tag="VIU37_11845"
     CDS             complement(<1..989)
                     /locus_tag="VIU37_11845"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014698.1"
                     /translation="MRVAIIGGGVSGLSAAYATHDRHDIRLYDAEAPVGGHVKTVAVA
                     SPAGPIPVDMGFIVHNDVTYPNFLRMIGELGVETQASDMSLGVMCRACDLEFSSRGAG
                     GWFAQPSAALRPGHWRMFADILRFYRDARERLDGGVTSRATLADYLDDVGFGRGFRDH
                     FLVPITSAVWSTASDRILDFPIDYLLRFLDHHGLIGVGRALQWRTITGGSMRYVERIL
                     DRIGHDVVRAGDLVVDVLRTGPQVVVRTRSGSTDTFDAVILATHANDALRLLHDADAR
                     ERDALGAFEYSTNRVVLHTDPAVLPRRRGAWASWNVDADDCRRPSDALTMTYH"
     gene            complement(989..1459)
                     /locus_tag="VIU37_11850"
     CDS             complement(989..1459)
                     /locus_tag="VIU37_11850"
                     /inference="COORDINATES: protein motif:HMM:NF017999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY6014699.1"
                     /translation="MTRLHERIETTLPIEAAFDYVADFANAQEWDPGVASARRIDAGP
                     VAVGARYDLGVRMGSRVAPMEYRITELDRPRRVVLVGAGSNVDAVDDIRFERSGDGTV
                     IDYTADIRLGGLLRFVQPFLGGSFANLARNAAGGMERTLAVRATDAARTDEGIA"
     gene            complement(1443..2540)
                     /locus_tag="VIU37_11855"
     CDS             complement(1443..2540)
                     /locus_tag="VIU37_11855"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6014700.1"
                     /translation="MPLDPADLHGRVHWRDVMNPIHLVDDALEISVVGSFSRIGYAVR
                     RRLFGWAPADPGSLSGRTVLITGPTSGLGRAAAEGLAALGARVILVGRRPDRLADMRD
                     ALVRTHGEDRFPIVVADMASLASVRAAAARILDSEPRLDVLVDNAGAIFPERMESPDG
                     IEATLATMVVGPFALIAGLLPLLRRTGRARVIAVTSGGMYAQRLDLDDLQWTSGAYDG
                     TRAYARAKRAQAALSREWARRIPASEVTFTAMHPGWADTPGLSASLPAFRGLMTPILR
                     TLMQGADTIVWLAAAGSPPVVSGRLYLDRRARPFDRIPGTRLSPDGRRRLWDAVVRLA
                     DLADPVTAPAVTDATPQRPEPPKEQRHDPPA"
     gene            complement(2549..3430)
                     /locus_tag="VIU37_11860"
     CDS             complement(2549..3430)
                     /locus_tag="VIU37_11860"
                     /inference="COORDINATES: protein motif:HMM:NF025702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4397 domain-containing protein"
                     /protein_id="HEY6014701.1"
                     /translation="MNRLLSPILRVLAIGALTFSMVGVASASDHAMVRVLHASPDAPA
                     VDVYLDNVKVDALTNVPFGTISGYLDVPAGDHNVKVYATGTTTGAVIDANVTVVSGGR
                     YTIAATNAVASITAQVIEDKPAPNCEGAQVRVIHLSADAPAVDVATAGAAPADAVVKG
                     LAYPNATGYLSLPAGSYDLEVRLAGTTTVALPLPGVAIEACNSYSVFAVGSAANPAVG
                     GKALQVVVAVDATAQAEAPSVAPTPPATDSALSAAPTTGGGTGLGAVLLLVVAVAVTL
                     AVLSLRPATRRVRQDQD"
     gene            3600..>4539
                     /locus_tag="VIU37_11865"
     CDS             3600..>4539
                     /locus_tag="VIU37_11865"
                     /inference="COORDINATES: protein motif:HMM:NF014646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY6014702.1"
                     /translation="MYTIKQAAARSGLTVPTVRVWERRYGVVHPERTPTGYRLYDDAA
                     IARLIAMRHLVEVQGIRPSQAADQVLAAGADIAGLVQAARAASGPVPPGGAPATPPAD
                     RAREAVEGFVAAARLLDVSAMERVLDEAFAAERFEGAVDHVVFPALRSIGEGWSDGTI
                     DVSMEHAASETIRRRLSSFYDTVASATGTPDLIVGLPPGGQHEIGTLVFAIAARRRGL
                     DVLYLGADVPLESWRVAVEAIGARVAVIGVVGATDVAAADRVVRTLLASARPPIAAVG
                     GRRAQELSGTGDGVVVLPDRIDDAIALILGLAGSKGI"
BASE COUNT          665 a         1518 c         1715 g          641 t
ORIGIN      
        1 atgtggtacg tcatcgtgag ggcgtcgctg ggccggcggc aatcgtccgc atccacgttc
       61 cacgacgccc aggcaccgcg ccgtcgcggc aggaccgcgg gatccgtgtg gagcaccacc
      121 cggttcgtcg agtactcgaa cgcgccgagc gcgtcgcgct cacgggcgtc cgcatcgtgg
      181 agcagccgga gggcgtcgtt cgcgtgcgtg gccaggatca cggcgtcgaa cgtgtcggtg
      241 gacccggacc tggtgcgcac cacgacctgc ggccccgttc gcagcacgtc gacgaccagg
      301 tcgcccgccc ggacgacatc gtggccgatg cggtcgagga tccgctcgac gtagcgcatc
      361 gagccgcccg tgatcgtgcg ccactggagg gcgcgcccga ccccgatgag gccgtggtgg
      421 tcgaggaagc gcagcaggta gtcgatcggg aagtcgagga tgcggtccga cgcggtggac
      481 cagaccgcgg acgtgatcgg cacgaggaag tggtcgcgga acccgcgacc gaagcccacg
      541 tcgtcgagat agtcggcgag ggtcgcgcgc gaggtcacgc caccgtccag acgttcgcga
      601 gcgtcacggt agaagcggag gatgtcggcg aacatccgcc agtgtccggg gcgcagggcc
      661 gccgacggct gagcgaacca gcctccggcg ccgcgcgagc tgaactcgag atcgcaggcg
      721 cggcacatca cgccgagcga catgtcgctc gcctgggtct cgacgccgag ctcgccgatc
      781 atccgcagga agttcgggta ggtcacgtcg ttgtggacga tgaagcccat gtcgaccggg
      841 atcgggcctg ccggtgacgc gacggcgacc gtcttcacgt gccccccgac cggcgcctcg
      901 gcatcgtaca ggcggatgtc gtgccggtca tgggtcgcat aggcggcgct caggccactc
      961 acgcccccgc cgatgatcgc gacgcgcatc aggcgattcc ctcgtcggta cgcgccgcgt
     1021 cggtcgcccg cacggcaagc gtccgctcca tcccgccggc cgcattccgg gcgaggttcg
     1081 cgaacgatcc gccgaggaac ggctggacaa accgcagcag cccgccgagg cgaatgtcgg
     1141 ccgtgtagtc gatgaccgtt ccgtcgcccg agcgttcgaa gcggatgtcg tcgacggcat
     1201 cgacgttcga gccggcgccg acgaggacga ctcgccgcgg ccggtcgagc tccgtgatgc
     1261 ggtattccat cggggcgacg cggctgccca tccgcacgcc gaggtcgtag cgggcgccca
     1321 cggcaaccgg cccggcgtcg atccggcggg ccgaggcgac gcccggatcc cactcctggg
     1381 cgttggcgaa gtcggcgacg tagtcgaagg cggcctcgat cggcagggtc gtctcgatgc
     1441 gctcatgcag gcgggtcatg tcgttgctcc ttgggtggtt cgggccgttg gggggtcgcg
     1501 tcggtgacgg ccggcgcggt gacgggatcg gcgagatcgg ccaggcggac gaccgcatcc
     1561 cacagccggc gccgcccgtc ggggctcagg cgagtgcccg ggatccggtc gaacggtcgc
     1621 gctcggcgat cgagatagag gcggcccgag acgaccggag gcgacccggc cgcggcaagc
     1681 cagacgatcg tgtcggcgcc ctgcatgagc gttcgcagga tgggggtcat caggccgcgg
     1741 aacgccggca gcgaagccga cagccccggc gtgtccgccc agccgggatg catcgcggtg
     1801 aacgtcacct cagacgccgg gattcgacgg gcccactcgc ggctgagggc cgcctgggcg
     1861 cgcttcgcgc gggcgtaggc gcgggtgccg tcgtacgccc cgctggtcca ctgcaggtcg
     1921 tcgaggtcga gccgctgggc gtacatgccg ccggaggtca cggcgatgac ccgggcacgt
     1981 ccggtccggc gcagcagcgg caggaggccc gcgatgaggg cgaatgggcc gaccaccatc
     2041 gtcgcgaggg tcgcctcgat gccgtcgggg ctctccatgc gctccgggaa gatggctccc
     2101 gcgttgtcca ccaggacatc gaggcggggc tcgctgtcga ggatccgcgc cgcagcggca
     2161 cggaccgagg ccagcgaggc catgtccgcc acgacgatgg ggaagcggtc ctcgccgtgg
     2221 gttcggacga gcgcgtcgcg catgtcggcg agccggtcgg gacgtcgccc gaccaggatc
     2281 acccgggcgc ccagcgcggc gagtccctcg gcggcggccc ggccgaggcc ggacgtaggg
     2341 ccggtgatga ggacggtccg cccggagagc gaacccggat ccgccggcgc ccatccgaac
     2401 aggcgccggc ggacggcgta gccgatccgg gagaagctgc cgacgacgct gatctcgagg
     2461 gcgtcgtcga cgaggtggat ggggttcatc acgtcacgcc agtggacccg gccgtggagg
     2521 tcggccgggt ccaggggcat cgttcgtcct agtcctggtc ctggcgcacc cggcgggtgg
     2581 ctgggcgaag ggagaggacg gcgagggtga cggcaaccgc cacgaccagg agcagcacgg
     2641 cccccaggcc ggtgccacca cctgtcgtcg gtgcggcaga gagggcgctg tccgtggccg
     2701 gcggcgtcgg agcgacgctt ggcgcctcgg cctgggcggt ggcgtcgacg gcgacgacga
     2761 cctggagcgc cttgcccccg accgccggat tcgccgcgga cccgaccgcg aacacgctgt
     2821 agctgttgca ggcctcaatg gcgacgcccg gcagcggaag ggccacggtg gtggtccccg
     2881 cgagacggac ctcgaggtcg taggagccgg ccggcaggct gaggtagccg gtcgcgttgg
     2941 ggtaggcgag gcccttcacg acggcgtcag cgggcgccgc tccggcggtg gcgacgtcga
     3001 ccgccggcgc gtcggcgctc aggtggatga cgcggacctg tgccccttca cagttcgggg
     3061 cgggcttgtc ctcgatgacc tgggccgtga tggaggccac cgcgttcgtg gcggcgatcg
     3121 tgtagcggcc gcccgacacg acggtcacgt tcgcgtcgat gacggcgccg gtggtcgtgc
     3181 cggttgcgta gaccttgacg ttgtggtcgc ccgcaggcac gtcgagatag ccggagatcg
     3241 ttccgaacgg aacgttcgtg agggcgtcga ccttgacgtt gtcgaggtag acatcgacag
     3301 caggggcatc gggcgatgcg tggagaacgc gaaccatggc gtggtcggac gcgctggcca
     3361 cgccgaccat cgagaacgtg agcgctccga tcgcgagaac cctgaggatg ggcgagagaa
     3421 ggcggttcac tgtgactgac tccttcgagc ggggtcgcac gttgtctcgt gcgttggagg
     3481 ccactgcgcc ggtgagcggc cctggattgg tgtccaccct ttgttgaggg tgggtccaga
     3541 atgtaccgtg tatgtccaca gcttgtcaag ggttagcgat gtggtatggt ggacaaacca
     3601 tgtacaccat caaacaggcg gcggcgcgca gcggattgac cgttcccacg gtcagggtct
     3661 gggaacgccg gtacggggtc gtgcaccccg aacgcacgcc gaccggctac cgcctctacg
     3721 acgacgccgc gatcgcacgc ctgatcgcga tgcgccacct cgtcgaagtg caggggatcc
     3781 gcccctccca ggccgccgat caggtcctgg cggccggagc ggatatcgca ggcctcgtcc
     3841 aggcggcccg ggcggcttcg ggacccgtcc cacccggcgg cgcgccggcg acaccgccgg
     3901 ccgaccgcgc gcgcgaggcc gtcgagggct tcgtcgcggc ggcacgtttg ctcgacgtgt
     3961 ccgcgatgga gcgggtcctc gacgaggcgt tcgcggcgga gcggttcgag ggcgcggtcg
     4021 accacgtcgt cttccccgcc ctccgatcca ttggcgaggg ctggtccgac ggcaccatcg
     4081 acgtctcgat ggaacacgcc gcaagcgaga cgatccggcg acgcctttcc agcttctacg
     4141 acacggtcgc atccgcgacg ggcacccccg acctcatcgt cgggctgccg cccggcggac
     4201 aacacgagat cggcacgctc gtgttcgcca tcgcggcgcg gcgccgcggc ctcgacgtcc
     4261 tctacctggg ggccgatgta ccgctcgaga gctggcgggt tgcggtcgag gcgatcgggg
     4321 cgagggtggc cgtcatcggg gttgtcggcg cgaccgatgt cgctgcggcg gatcgcgtcg
     4381 tgcgtactct cctggcttcg gcgcgaccac cgatcgccgc cgtgggcggc aggcgcgcgc
     4441 aggagctatc cggcactggc gatggggtgg tcgtcctgcc cgaccggatc gacgacgcga
     4501 tcgccctgat cctcgggctg gctggatcaa aggggatat
//
LOCUS       DATDDI010000818         1889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_163460, whole genome shotgun sequence.
ACCESSION   DATDDI010000818 DATDDI010000000
VERSION     DATDDI010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163460"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..314
                     /locus_tag="VIU37_11870"
     CDS             <1..314
                     /locus_tag="VIU37_11870"
                     /inference="COORDINATES: protein motif:HMM:NF013440.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GreA/GreB family elongation factor"
                     /protein_id="HEY6014703.1"
                     /translation="AAREEQSFLEGRVQALEARLRSAVIVDAPAAGSRVGLGSKVTVE
                     HAGESATYTIVGASESHPASGRISSSSPVGRALVGHDVGDEVLVRTPAGERAYRIVSI
                     D"
     gene            complement(403..1068)
                     /locus_tag="VIU37_11875"
     CDS             complement(403..1068)
                     /locus_tag="VIU37_11875"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014704.1"
                     /translation="MSESAKIRVLLVDDHAVVRSGLRVFFDLQPDIEVVGEAADGSEG
                     VAMARRLEPDVILMDLLMPNMDGITAIARVKAERPETEIVTMTSFIEEDKVTAALEAG
                     ASGYVLKDAEAEEVAAAVRAAFAGEVHLDPAVARLLAQRMRQRKSPQDELAEPLTDRE
                     KDVVNLLGQGMSNKEIASRLFITERTARTYVSNILGKLGLASRTQAALYAVEHKLVEP
                     PTK"
     gene            complement(1157..1555)
                     /locus_tag="VIU37_11880"
     CDS             complement(1157..1555)
                     /locus_tag="VIU37_11880"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014705.1"
                     /translation="MEPLLPGPVAPLRIVLVDSDDLVRESLTGLLGIGRRIRVVGAAG
                     EPGHALGLIGMTQPDVVVVDPRLPELASGLEFIEQARRLAPGAAVLVIGSADVVERAA
                     RYAGVDACVRKTFRPDDLTAAILACRRDVA"
     gene            complement(1627..>1889)
                     /locus_tag="VIU37_11885"
     CDS             complement(1627..>1889)
                     /locus_tag="VIU37_11885"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6014706.1"
                     /translation="LEVGRTAAGVQLRIEDDGKGFDPARVPDGHLGLAGMRARADKIG
                     ARFSCRSEPGQGTTIEVEVPEEAIAAAGPVSGPSPVTQIRAD"
BASE COUNT          260 a          686 c          666 g          277 t
ORIGIN      
        1 acgccgcgcg ggaggagcaa tcgttcctcg aaggccgggt ccaggcgctg gaggcgcggc
       61 tccggtccgc cgtcatcgtg gacgcgccgg cggccggctc ccgcgtgggt ctcggatcga
      121 aggtcaccgt ggagcacgcc ggcgagagcg ccacctacac gatcgtgggc gcatccgagt
      181 cgcacccggc gtccgggcgg atctcctcat cctcgcccgt cgggcgggcg ctcgtcggtc
      241 atgacgtcgg cgacgaggtg ctcgtgcgga ccccggccgg agagcgcgcc taccggatcg
      301 tgtcgatcga ctgaccgacc cggggcagaa tcgtcatgat cctcatcgtc ctccagcggg
      361 ccctgctgcg gaacacgctg gtggcggcgg actgagcccc cgctatttcg tgggtggctc
      421 gacgagcttg tgctcgaccg cgtagagcgc ggcctgggtg cgcgatgcca gcccgagctt
      481 tccgaggatg ttcgagacat aggttcgcgc cgtccgctcg gtgatgaaca ggcggctcgc
      541 gatctccttg ttgctcatcc cctgcccgag caggttcacg acgtccttct cacggtcggt
      601 cagcggctcg gccagctcgt cctggggcga cttgcgctgg cgcatccgct gggcgagaag
      661 acgggcgacg gccggatcga gatggacctc gccggcaaac gcggcccgga cggcggccgc
      721 gacctcttcc gcctcggcgt ccttgagcac gtagccggag gcgcccgctt cgagcgccgc
      781 ggtgaccttg tcctcctcga tgaacgaggt catggtcacg atctcggtct cggggcgctc
      841 ggccttgacc cgcgcgatcg cggtgatccc gtccatgttg ggcatcaaca ggtccatcag
      901 gatcacgtcg ggctcgagcc ggcgggccat cgccacgccc tccgagccgt cggcggcctc
      961 gccgaccacc tcgatgtccg gctgcagatc gaagaagacg cggaggccgc tccggacgac
     1021 ggcgtgatcg tccacgagca gcacgcggat cttggcggat tcgctcacat cggctcccgg
     1081 cggcggtgcg ccatggacgg gtcgtggctt cggcgggaac gccaccgagt ctagcaaagg
     1141 acgggcgcct cgacggtcac gcgacgtcac gccggcaggc gaggatcgcg gccgtcaggt
     1201 cgtccggccg gaaggtcttg cgaacgcagg cgtccacgcc ggcgtacctc gcggctcgct
     1261 cgacgacgtc ggccgagccg atcaccagca cggccgcgcc cggggcgagc cggcgtgcct
     1321 gttcgatgaa ctcgaggccg ctggccagct cgggcagcct cgggtcgacg acgaccacgt
     1381 cgggctgcgt catgccgatc aggcccagcg cgtgaccggg ttcgcctgcg gcacccacca
     1441 cccggatccg ccggccgatg ccgaggagac ccgtgaggct ctcccggacc agatcgtccg
     1501 aatccaccag gacgatcctg agcggcgcga ccggacctgg gagcaggggt tccattcccg
     1561 cgatggtcgc gcccgggccg gcccggcgta actgacgaat gacgatgtcc cggcggagga
     1621 acgtcctcag tccgcgcgga tctgcgtcac gggcgacgga cccgacaccg ggcccgccgc
     1681 ggcgatcgcc tcctcgggga cctcgacctc gatcgttgtc ccctgccccg gctcgctccg
     1741 gcacgagaac cgggcgccga tcttgtcggc gcgggcgcgc atcccggcca ggccgagatg
     1801 gccgtccggc acccgggccg ggtcgaaccc cttgccgtcg tcctcgatgc gcagctggac
     1861 gcccgccgcc gtccggccga cctcgagcc
//
LOCUS       DATDDI010000819         2251 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_308923, whole genome shotgun sequence.
ACCESSION   DATDDI010000819 DATDDI010000000
VERSION     DATDDI010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308923"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..177)
                     /locus_tag="VIU37_11890"
     CDS             complement(19..177)
                     /locus_tag="VIU37_11890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014707.1"
                     /translation="MTDLAYRGKGRFLVGVPARDLTPDDIARLPERLRARLIPSGLYA
                     PKSPGGKK"
     gene            complement(174..680)
                     /locus_tag="VIU37_11895"
     CDS             complement(174..680)
                     /locus_tag="VIU37_11895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014708.1"
                     /translation="MTVRGTSTLRVSVRGLSGIERALRPWLEPELTNVLDVANRGAAR
                     SLAKDVKAEAAPVSKHMARAVRVKRARTGKPGWVVGSKRKTYPWWHMTIGGTKAHGPR
                     RSAALIFVPGFEPYLGASSHGVGNSVVRASRVSGVPANDIVERAARKGERAAVDEIDR
                     QVTAVTGT"
     gene            complement(677..1147)
                     /locus_tag="VIU37_11900"
     CDS             complement(677..1147)
                     /locus_tag="VIU37_11900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014709.1"
                     /translation="MIALKAIADALAARFAPGTIATPSNAAAMRASYAQIPKNIAAVP
                     CVVLEVQDGTLTANPGQWTHEIRIDVVFVYSKRQADTVREEKQRQLWLGTLLAATEGQ
                     MKLGLGSATGYTVDKAIPTSWEFIEYPFGGENTTYDAIRIHFTVYARETVSLTP"
     gene            complement(1144..1776)
                     /locus_tag="VIU37_11905"
     CDS             complement(1144..1776)
                     /locus_tag="VIU37_11905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014710.1"
                     /translation="MTTAIGAYATASLLKTQTAIGDNTDDTVLGYVCDRINQYIESRT
                     QRVLAPIASTTYLYDGDGTTSIYLPFPVDKAPIGGIRAVTLVEVQLFTASGYTSLPSG
                     DTFLRQQAVRASGAPFERLVMSDYPTGGYLYFPRGFATVRVTGTAGWAAIPDDITEVA
                     LVAATRAWHAVQAGQADIVGTDDMGRPLVSRFFSARDLETLDRYGASLPG"
     gene            complement(1943..>2251)
                     /locus_tag="VIU37_11910"
     CDS             complement(1943..>2251)
                     /locus_tag="VIU37_11910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY6014711.1"
                     /translation="ALRPTGETRLIRCGWCGAVTKPAEPCHACGHVEPEKPWVQRDQE
                     VPEIRTDAAGRPALDARDVRKRLREARASLGPSATKAQIAEHLDVSVRTLGRWEQLAE
                     "
BASE COUNT          294 a          770 c          840 g          347 t
ORIGIN      
        1 cattgaagac ggactcgctc acttcttgcc tcctggagac ttgggcgcgt acaggcccga
       61 tgggatgagt cgcgcccgga gccgctccgg gagcctcgcg atgtcgtcgg gggtgagatc
      121 gcgcgcaggg accccgacga ggaaccgccc cttgccgcga taggccagat cggtcatgtg
      181 cccgtcaccg ccgtcacctg gcggtcgatc tcgtccaccg ccgcccgttc gcccttccga
      241 gcggcgcgct cgacgatgtc gttggccggc accccgctga cccggctagc acgcacgacg
      301 ctgttgccga cgccgtggct cgatgcgccg aggtagggct cgaagccggg cacgaagatg
      361 agcgcagcgg accggcgtgg cccgtgggcc ttcgtgccgc cgatcgtcat gtgccaccac
      421 gggtaggtct tgcgcttcga gccgacgacc cagccgggct tgcccgtccg cgcccgcttg
      481 acgcggacgg cgcgggccat gtgcttcgat accggcgccg cctcggcctt gacgtccttc
      541 gccagcgacc gcgccgcgcc ccggttggcg acgtcgagga cgttcgtgag ctcgggctcc
      601 agccacgggc gcagggcgcg ctcgatgccc gacaggccgc ggaccgagac gcgcagggtg
      661 gacgtgccgc ggacggtcat ggcgtcaggc tcacggtttc gcgggcgtac accgtgaagt
      721 ggatgcggat ggcatcgtag gtcgtgtttt cgccgccgaa ggggtactcg atgaactccc
      781 aggacgtcgg gatggccttg tcgacggtgt agcccgtcgc cgagccgagg ccgagcttca
      841 tctggccctc ggtcgccgcg aggagcgtcc cgagccacag ctggcgctgc ttctcctcgc
      901 ggacggtgtc ggcctggcgc ttcgagtaga cgaagacgac gtcgatgcgg atctcgtgcg
      961 tccactggcc cgggttcgcg gtcagcgtcc cgtcctgcac ctcgaggacc acgcacggca
     1021 cggcggcgat gttcttgggg atctgggcgt aggacgcccg catcgccgcc gcgttcgagg
     1081 gcgtggcgat cgtgcccggc gcgaaccgcg ccgcgagggc gtcggcgatg gccttgaggg
     1141 cgatcatccc ggcaggctcg cgccgtagcg gtcgagcgtc tcgaggtcgc gcgccgagaa
     1201 gaaccgggag acgagcggcc gacccatgtc gtcggtcccg acgatgtcgg cctgccccgc
     1261 ctggaccgcg tgccacgccc gcgtcgccgc cacgagcgcg acctcggtga tgtcgtcggg
     1321 gatcgcggcc cagcccgccg tgccggtcac ccggaccgtg gcgaagccgc gcgggaagta
     1381 gaggtagccg cccgtcgggt agtcgctcat cacgagccgc tcgaagggcg cgcccgacgc
     1441 ccggacggcc tgctggcgca ggaaggtgtc gcccgacggc aggctggtgt agcccgacgc
     1501 ggtgaagagc tggacctcga cgagcgtgac cgcccggatg ccgccgatcg gggccttgtc
     1561 caccgggaag ggcaggtaga tcgaggtggt cccgtcgccg tcgtacaggt aggtcgtgga
     1621 ggcgatcggg gcgaggacgc gctgggtccg gctctcgatg tactggttga tccggtcgca
     1681 gacgtagccc aggaccgtgt cgtcggtgtt gtcgccgatg gccgtctggg tcttgaggag
     1741 cgaggcggtc gcgtaggccc cgatggctgt cgtcacggtg tcatcctccg atcggcgcgg
     1801 cggcggatat agcgcgggaa ccggacatca atcggccacc aacgggcacc gctgcccgag
     1861 ttcgccgagg aggtccatgc cgggtcgagc tcgacccgcg cgatgccgtt ggtcgtggtc
     1921 acagcggtcg cactccaagt cgtcattccg cgagctgctc ccagcggccg agcgtcctga
     1981 ccgagacgtc gagatgctcc gcgatctggg ccttcgtggc gctgggcccg agcgaggccc
     2041 gtgcctcgcg gaggcgcttg cggacatccc gggcgtcgag ggccgggcgg ccggcggcgt
     2101 ccgttcggat ctcgggcacc tcctggtcgc gttggaccca cggcttctcg ggctcgacgt
     2161 ggccgcaggc gtggcacggc tcggcgggct tcgtgacggc gccgcaccag ccgcagcgga
     2221 tcagccgcgt ctcgcccgtc gggcggaggg c
//
LOCUS       DATDDI010000820         1800 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_163485, whole genome shotgun sequence.
ACCESSION   DATDDI010000820 DATDDI010000000
VERSION     DATDDI010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163485"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..529)
                     /locus_tag="VIU37_11915"
     CDS             complement(86..529)
                     /locus_tag="VIU37_11915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014712.1"
                     /translation="MTMHRRPLGRGRTLATVAGILIVPGCVLQWWQVGGTPGVTPLSG
                     NGLAGSGIVVFLVGIATLALVALPYAAGDRPVGLDRWLTFAILLAAGWIGFAWRLVEL
                     GLSDAFQFAEPADVVTHGPGIWIAGLGLIVLSRAVLEMAAEPARR"
     gene            complement(526..1098)
                     /gene="hpt"
                     /locus_tag="VIU37_11920"
     CDS             complement(526..1098)
                     /gene="hpt"
                     /locus_tag="VIU37_11920"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006680773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEY6014713.1"
                     /translation="MSQTAGLHADVAEVLLTEEEIGAKVRELGARISADYAGRRLTLV
                     SVLKGSLPFMADLMRSIDIPVRIDLMEVSSYGGATTESSGLVRILKDLSASIVNEDVL
                     IVEDIIDTGLTLNYLIRYLRGKAPASLRICTLLDKPARRLVEIKVDYVGFTIPDQFVV
                     GYGLDYGELYRNLRYVGVLRPEVYSGTPEA"
     gene            complement(1095..1643)
                     /locus_tag="VIU37_11925"
     CDS             complement(1095..1643)
                     /locus_tag="VIU37_11925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014714.1"
                     /translation="MSAPFAHASEAEMSRILDFYGVRWEYEPHTFPILWNLDGAVVES
                     FSPDFFLPDLDIYLELTTLRQKLVRKKNRKLRRLRELYPDLNIKLFYARDFRALMLKY
                     GRLALIDGMSGTSGQVASPHAAEALGTHRAGESPVDGRRLTVADAVEPPPEVVPALPG
                     AASSRRRRARAASGGHEQAAVS"
BASE COUNT          292 a          610 c          654 g          244 t
ORIGIN      
        1 cctgcgctgg ttcgcgatcg tggtggagac ccgacgggtg gcggcgccgg cccattgatt
       61 cgctcgcggc gaccgggagg cggcgtcagc gccgggcagg ctccgcggcc atctccagca
      121 ccgcccggga cagcacgatc agtccgagcc cggcgatcca gatgcccggt ccgtgggtga
      181 cgacgtcggc cggctcggcg aactggaacg cgtcgctcaa cccgagctcg acgagtcgcc
      241 aggcgaagcc gatccagccg gcggccagca ggatcgcgaa ggtcagccag cgatcgagac
      301 cgaccgggcg atcgcccgcc gcatacggca gggccaccag ggcgagggtc gcgattccga
      361 cgaggaacac gacgatcccg ctgccggcga gcccgttgcc cgacagcggc gtcacgcccg
      421 gcgtcccgcc cacctgccac cactgcagca cgcaacccgg gacgatgagg atcccggcga
      481 ccgtcgcgag tgttcgcccg cggccgagcg gccggcggtg catcgtcatg cctcgggcgt
      541 ccccgagtag acctccgggc ggagcacgcc cacgtaccgc aggttccggt acagctcgcc
      601 gtagtcgagt ccgtagccga ccacgaactg gtcggggatc gtgaacccga cgtagtcgac
      661 cttgatctcg acgaggcggc gggccggctt gtcgaggagg gtgcagatcc ggagcgacgc
      721 cggggccttg ccgcgcaggt agcggatcag gtagttgagc gtcagccccg tgtcgatgat
      781 gtcctcgacg atcaggacgt cctcgttgac gatgctcgcc gagaggtcct tgaggatccg
      841 gacgagcccc gacgactcgg tcgtcgcccc gccgtacgag ctgacctcca tcaggtcgat
      901 ccggaccggg atgtcgatcg agcgcatcag gtcggccatg aacggcagcg aacccttgag
      961 caccgagacc agcgtcagcc ggcggccggc gtagtcggcg ctgatccggg cgccgagctc
     1021 gcgcaccttg gcgccgatct cctcctcggt caggaggacc tccgcgacgt cggcatggag
     1081 gccggcggtc tggctcatga cacggctgcc tgctcatgcc cgccggacgc cgcacgggcg
     1141 cgacgccgcc gcgacgacgc ggcgccgggc agcgcgggaa cgacctcggg cggaggctcg
     1201 acggcgtcgg cgaccgtgag ccgtcggccg tcgacgggag attccccggc gcggtgggtg
     1261 ccgagggcct cggccgcgtg cggcgacgcc acctggccgg acgtgccgga catcccgtcg
     1321 atcagcgcga gccgcccgta cttgagcatc agcgcccgga agtcgcgggc atagaagagc
     1381 ttgatgttga gatccgggta gagctcgcgc aggcgccgca gcttgcggtt cttcttgcgg
     1441 acgagcttct ggcgcagcgt ggtgagctcg aggtagatgt cgaggtcggg caggaagaag
     1501 tccggcgaga agctctcgac cacggcgccg tccaggttcc agaggatggg aaacgtgtgc
     1561 ggctcgtatt cccagcggac gccgtagaag tcgaggattc gtgacatctc cgcctcgctg
     1621 gcatgggcga agggcgcact caccggtcga cgaaccttcg acggacggcg cccgaggcgt
     1681 cgcccggacg tcggcaagga cgatcgcacg gatccatcgg aggccagtct accggagccg
     1741 cgtcgttctc ggctaggacg gaccggcgga tacccccagg gagtatgatc aggcaagagg
//
LOCUS       DATDDI010000821         2639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_121699, whole genome shotgun sequence.
ACCESSION   DATDDI010000821 DATDDI010000000
VERSION     DATDDI010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121699"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /gene="rplF"
                     /locus_tag="VIU37_11930"
     CDS             complement(<1..355)
                     /gene="rplF"
                     /locus_tag="VIU37_11930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008372550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEY6014715.1"
                     /translation="MPIAVPTGVDVAIEGRHITVTGPKGSLSRDLHPEMGVSRDGDAI
                     VVTRPSETKTHKQLHGLTRTLVNNMVVGVTSGYRKGLEITGVGYRATLVGRKLQLSLG
                     YSHPVEIDPPSGISFE"
     gene            complement(378..776)
                     /gene="rpsH"
                     /locus_tag="VIU37_11935"
     CDS             complement(378..776)
                     /gene="rpsH"
                     /locus_tag="VIU37_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEY6014716.1"
                     /translation="MNISDPIADMLTRVRNASRARHTEVVVPASRTKREIARILKAEG
                     FIDDVAEERDGTAQVLRLTLRYVDGKVPVVSGLKRISKPGLRVYARKTDIPRVLGGLG
                     IVIVSTSQGIMTGAQARKAQLGGEVLAYVW"
     gene            complement(783..968)
                     /locus_tag="VIU37_11940"
     CDS             complement(783..968)
                     /locus_tag="VIU37_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEY6014717.1"
                     /translation="MAKKSLIAKAKRKPKFSARGYHRCVVCGRPRGFMRRFNLCRICF
                     RERALQGELPGVTKSSW"
     gene            complement(987..1526)
                     /gene="rplE"
                     /locus_tag="VIU37_11945"
     CDS             complement(987..1526)
                     /gene="rplE"
                     /locus_tag="VIU37_11945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016281718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEY6014718.1"
                     /translation="MSALHERYSTEVVPALTKQFEYRNPMEVPRLSKIVVNIGLGEAL
                     TNAKAIDAATGDLATITGQKPIVLKAKRSIAQFRVRTGNPIGLKVTLRGQRMWDFLER
                     LTLLSLPRIRDFRGIPAKSFDGRGNYTLGLREQIAFPEIDYDKVDRLRGLEISIVTTA
                     KSDEESKRLLELLGMPFAS"
     gene            complement(1523..1936)
                     /gene="rplX"
                     /locus_tag="VIU37_11950"
     CDS             complement(1523..1936)
                     /gene="rplX"
                     /locus_tag="VIU37_11950"
                     /inference="COORDINATES: protein motif:HMM:TIGR01079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEY6014719.1"
                     /translation="MAQLPEIRKGDTVVVLAGKDVGKQGVVDHVIRREPSRSPLRSVY
                     RRGSPKGGVSVVIEGINVGKRHQKPRQSSSQTDRMPKIQQGGILDVAMPLDVSKVMLV
                     CPKCHRPTRVGHTVLDDGRRVRTCKHCGAALEVVK"
     gene            complement(1936..2304)
                     /gene="rplN"
                     /locus_tag="VIU37_11955"
     CDS             complement(1936..2304)
                     /gene="rplN"
                     /locus_tag="VIU37_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEY6014720.1"
                     /translation="MIQPQSRLKVADNTGARTIQCIRVMGRSLKTTAGVGDVIIASVK
                     QAIPNAAVKKGDVVRAVVVRTAKEYGRADGSYIRFDENAAVLINNQGNPRGTRIFGPV
                     ARELRDRNYMKIVSLAPEVL"
     gene            complement(2301..>2639)
                     /gene="rpsQ"
                     /locus_tag="VIU37_11960"
     CDS             complement(2301..>2639)
                     /gene="rpsQ"
                     /locus_tag="VIU37_11960"
                     /inference="COORDINATES: protein motif:HMM:NF012586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEY6014721.1"
                     /translation="VVSVERLARHRLYKRVIRLTTKFKAHDEENTAQIGDTVLIEESR
                     PLSATKRWRLVRVLARAGEHGSISELGPEEAAVSEAIHGAAHPGRHHEASAPESAGAA
                     DADEAAGEDA"
BASE COUNT          359 a          885 c          944 g          451 t
ORIGIN      
        1 cctcgaagct gataccggac ggcggatcga tctcgacagg atggctgtag ccgaggctca
       61 gctggagctt ccggccgacg agggtcgcgc ggtagccgac gccggtgatc tcgaggccct
      121 tgcggtagcc cgaggtcacc ccgacgacca tgttgttgac gagcgtccgg gtgagcccgt
      181 ggagctgctt gtgggtcttc gtctcgctcg gccgggtcac gacgatcgcg tcgccgtccc
      241 ggctgacgcc catctccgga tggaggtcgc gtgacagcga gcccttcggg ccggtcacgg
      301 tgatgtgacg accctcgatg gcgacgtcga ccccggtggg gacggcgatg ggcatgcggc
      361 cgattcggga catcgggcta ccagacgtac gcgaggactt cgccgccgag ctgggccttg
      421 cgggcctgcg cgccggtcat gatcccctgg ctggtgctga cgatgacgat gccgaggccg
      481 ccgaggacgc gcgggatgtc cgtcttgcgg gcgtagaccc gcaggcccgg cttgctgatc
      541 cgcttgaggc cggacacgac cgggaccttg ccgtcgacgt agcgcagggt caggcgcagc
      601 acctgggcgg tgccgtcccg ctcctcggcg acgtcgtcga tgaagccctc ggccttcagg
      661 atccgggcga tctcgcgctt cgtccgagag gccgggacga cgacctcggt atggcgcgcg
      721 cgggaggcgt tcctgacccg cgtcagcatg tcggcgatgg gatcggagat gttcatgcgg
      781 gcctaccagc tcgacttcgt gacgcccggc agctcgccct ggagggcgcg ctcccggaag
      841 cagatgcggc acaggttgaa gcggcgcatg aagccgcggg gccggccgca gacgacgcag
      901 cggtgatagc cccgggcgga gaacttcggc ttccgcttcg ccttggcgat gagtgacttc
      961 ttggccattc ggtctttcct ccccgcctac gaggcgaagg gcatgccgag gagctcgagc
     1021 agacgcttcg actcctcgtc ggacttcgcc gtcgtcacga tgctgatctc cagcccgcgg
     1081 agacggtcca ccttgtcgta gtcgatctcg gggaacgcga tctgctcgcg cagcccgagg
     1141 gtgtagttac cgcgcccgtc gaacgacttc gccgggatgc cgcggaagtc gcggatccgg
     1201 ggcagcgaca ggagcgtgag gcgctccagg aagtcccaca tccgctgacc gcgcagggtc
     1261 accttgaggc cgatcgggtt gccggtccgc acccggaact gggcgatcga gcgcttggcc
     1321 ttgaggacga tcggcttctg gccggtgatg gtggcgagat cgccggtcgc ggcatcgatg
     1381 gccttggcgt tggtgagggc ctcgcccagg ccgatgttga ccacgatctt cgagagccgc
     1441 ggcacctcca tcgggttgcg gtactcgaac tgcttcgtca gcgccggcac gacctccgtc
     1501 gagtagcgct cgtggagggc gctcacttca cgacctccag ggcggcaccg cagtgcttgc
     1561 aggtccgcac ccgccggccg tcgtcgagga cggtgtggcc gacccgcgtc gggcggtggc
     1621 acttggggca gacgagcatg accttgctga cgtcgagcgg catcgcgacg tcgaggatcc
     1681 cgccctgctg gatcttcggc atccggtcgg tctggctcga ggactggcgc ggcttctggt
     1741 gccgcttgcc gacgttgatg ccctcgatga cgaccgacac gccgcccttc ggcgagccgc
     1801 ggcgatagac gctccggagg gggctccggc tcggctcccg tcggatgacg tggtcgacga
     1861 cgccctgctt gcccacgtcc ttgccggcca gcacgacgac ggtgtcgccc ttgcggatct
     1921 cgggcagctg tgccatcaca gcacctccgg ggcgagggac acgatcttca tgtagttccg
     1981 atcccgcagc tcccgcgcga ccgggccaaa gatccgggtc ccgcgcgggt tgccctggtt
     2041 gttgatgagc accgcggcgt tctcgtcgaa ccggatgtag ctgccgtccg cccggccata
     2101 ctccttggcc gtgcgcacga cgaccgcccg cacgacgtcg cccttcttga cggcggcgtt
     2161 cgggatcgcc tgcttgacgc tggcgatgat cacgtcaccc acgccggccg tcgtcttcag
     2221 cgagcggccc atgacgcgga tgcactggat cgtccgggca cccgtgttgt cggcgacctt
     2281 gaggcgcgac tggggctgga tcatgcgtcc tcccctgccg cttcatcggc atcggcggcc
     2341 ccggccgatt cgggggcgct cgcctcgtgg tgccggccgg gatgggccgc gccgtggatg
     2401 gcctcggaga ccgcggcctc ctcgggaccg agctcgctga tggagccgtg ctcaccggcc
     2461 cgggcgagga cgcggacgag ccgccagcgc ttggtcgccg agagcggccg cgactcctcg
     2521 atgaggaccg tgtcgccgat ctgggcggtg ttctcctcgt catgcgcctt gaacttcgtg
     2581 gtcaggcgga tgacgcgctt gtagagccgg tgacgggcga ggcgctcgac ggacacgac
//
LOCUS       DATDDI010000822         1619 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_704744, whole genome shotgun sequence.
ACCESSION   DATDDI010000822 DATDDI010000000
VERSION     DATDDI010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_704744"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VIU37_11965"
     CDS             complement(<1..656)
                     /locus_tag="VIU37_11965"
                     /inference="COORDINATES: protein motif:HMM:NF013482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014722.1"
                     /translation="MAEVTTRTAPPTPVLVEPGTVAPGRARGTAPLRREGPAKLTGAA
                     MYTDDLVIPGAWYGATIRSTDAHARFSALDLDPAFDWSSVVVVTAADIPGENIVSSIK
                     ADQPILVPLGGEIQHHAEPLALLAAPDRATLRAARRAVRVRTEPLPPVFDPLDSDHVF
                     AAYEIAAGDPSAAFAAADLVLEGEYRVGHQEQLYIENQAMIAVPEDDGGVTVTGSLQC
                     P"
     gene            779..1498
                     /locus_tag="VIU37_11970"
     CDS             779..1498
                     /locus_tag="VIU37_11970"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6014723.1"
                     /translation="MEDLTGTVAVVTGASSGIGRATARELLGAGARVVIGARRRDRLE
                     EIEAEFPDRVAAVETDVRSPDDCRRLVATAMSRFGRLDSLVANAGIGMYGGILDQTDE
                     ALATMLDTNVAGTVWPIRAAVPAMIEAGRGDIVIVASVAGFRSGADEAVYAATKFAQI
                     GLAGGLDRELREKGIRVTAIAPAGTATEFAIGAGRTEDMPELHTYLRPEDIAFAIRTV
                     LEQPRRLRTQFWTIWSMAQGS"
BASE COUNT          231 a          554 c          610 g          224 t
ORIGIN      
        1 gggcactgga gcgaacccgt gaccgtcacg ccgccgtcgt cctccggcac ggcgatcatc
       61 gcctggttct cgatgtagag ctgctcctgg tggccgacgc ggtactcgcc ctcgagcacg
      121 aggtccgcgg ccgcgaaggc cgcggacggg tcgcccgccg cgatctcgta ggcggcgaag
      181 acgtggtcgg agtcgagtgg atcgaacacg ggtgggagcg gctcggtccg gacccggacg
      241 gctcgccgtg ccgcccggag cgtcgcccgg tccggcgcgg ccaggagcgc gagcggctcc
      301 gcatgatgct ggatctcgcc acccagcggt acgagaatcg gctggtcggc cttgatcgag
      361 ctgacgatgt tctcgccggg gatgtcggcg gcggtgacga cgaccacgct cgaccaatcg
      421 aacgccgggt cgaggtccag ggcggagaac cgcgcatggg cgtcggtcga ccggatggtg
      481 gccccgtacc aggcgcccgg aatgaccagg tcgtcggtgt acatggccgc gccggtcagc
      541 ttggcgggac cctcgcgacg caacggggcc gtcccgcggg cacgaccggg cgcgaccgtg
      601 ccgggctcca cgagtacggg cgtgggcggc gcggtccggg tggtcacctc agccacagac
      661 caggctccat gtccgttgac tctatcaccg ggcgacggcc ggacggggct cgccgtgcgg
      721 cccgccaggt tcgacaatgg cgccgtcggc gtcgtcaacg cgcttcgagg agacggacat
      781 ggaagatctc accggaacgg ttgcggtggt gacgggagcc agctccggga tcgggcgtgc
      841 gacggcccgc gagttgctcg gcgcaggcgc ccgggtcgtc atcggggcac ggcggcgcga
      901 ccgcctcgag gagatcgagg cggagttccc cgaccgggtc gccgcggtcg agaccgacgt
      961 ccgctcgccg gacgactgcc gccggctggt ggccacggcg atgtccagat tcgggcggct
     1021 cgacagcctg gtcgcgaacg ccgggatcgg gatgtacggt gggatcctcg accagaccga
     1081 cgaagccctc gcgacgatgc tcgacaccaa cgtcgccggc acggtctggc cgatccgggc
     1141 ggcggtcccg gccatgatcg aggcggggcg gggcgacatc gtcatcgtcg cctcggtcgc
     1201 cgggttccgg tccggcgccg atgaggcggt ctacgccgcg acgaagttcg cccagatcgg
     1261 cctggccggc gggctcgatc gcgagcttcg cgagaagggc atccgggtca ccgcgatcgc
     1321 gccagcgggg acggccaccg agttcgcgat cggcgccggc cggaccgagg acatgcccga
     1381 gctccacacc taccttcgac ccgaggacat cgcgttcgcc atccgcacgg tgctcgagca
     1441 gccgcgccgg ctgcggaccc agttctggac gatctggagc atggcccagg gcagctgagc
     1501 cggagatcgc ctcgtgcgcc ggtccgatga ctttcgggtc atggtcagcc ctcccgggtg
     1561 atcgcgagac tggcgccgtg agcttgccag ccacgtcttg agcgtgcgca agcgcccgt
//
LOCUS       DATDDI010000823         1787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_225904, whole genome shotgun sequence.
ACCESSION   DATDDI010000823 DATDDI010000000
VERSION     DATDDI010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225904"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VIU37_11975"
     CDS             complement(<1..313)
                     /locus_tag="VIU37_11975"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014724.1"
                     /translation="MARSYDAIIIGGGHNGLVSAAYLARAGLKTLVLEKRHVLGGAAV
                     TEEIFPGFRFSVFSYVVSLLRPEIIRDLELPKHGLDILPLDGTFTPLRPGEGPAAGGG
                     DY"
     gene            complement(379..1170)
                     /locus_tag="VIU37_11980"
     CDS             complement(379..1170)
                     /locus_tag="VIU37_11980"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014725.1"
                     /translation="MTSVEARYARAMRPGGYDGPIVATHDLCRDFVRGADVVHAVRDV
                     NLRVERGELVAIRGRSGSGKTTLLSLIGGLDRPTSGRVEVDGQSVGEMRPAELVDLRR
                     RRVGFIFQAFGLLSILSAAENVEVPMRLVSADPRERAERVGILLELVGLGGRAHHRPH
                     ELSGGEQQRVAIARALANRPDLLLADEPTGQLDSGTGRSIMTLLRAIVRSEQLTAIIA
                     THDPMLIDLADRAIELRDGRFIDGTGPAGPAEPRHADPSGGSRLR"
     gene            complement(1167..>1787)
                     /locus_tag="VIU37_11985"
     CDS             complement(1167..>1787)
                     /locus_tag="VIU37_11985"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6014726.1"
                     /translation="PRAREAAARELLDQVELGDRLHRRPDALSGGEQQRAAIAVALAN
                     RPEVLLADEPTGELDTATAHQTFELFRRLNQELGVTIVIATHDPLVSEQVSRTIAIRD
                     GRVSSEVLRQRAISEAGEHHVIATEYAVLDRAGRLQLPRAHVEALHLERRVRLELEPD
                     HIGVWPDRPGSTPAGPHGADPADVSGHAAAPADGPPAPERRPEGRP"
BASE COUNT          234 a          651 c          671 g          231 t
ORIGIN      
        1 gatagtcgcc gccgccggcg gccggtccct cgcccggtcg gagcggggtg aacgtgccgt
       61 cgaggggcag gatgtcgagc ccgtgcttcg ggagctccag gtcgcggatg atctcgggcc
      121 ggagcagcga caccacgtag ctgaagaccg agaaccggaa gcccgggaag atctcctcgg
      181 tgaccgccgc gccgccgagg acgtggcgct tctcgagcac cagcgtcttg agcccggccc
      241 gcgccaggta cgccgcgctg accaggccgt tgtggccacc gccgatgatg atcgcgtcgt
      301 acgaccgggc cacgctgcct cctcgggctg cgccccgagg gcgctgcgac tatccagcct
      361 gcatagcttt catgcagtct agcggagccg cgacccgccc gaagggtcgg cgtgacgcgg
      421 ctcggccggg ccggccgggc ccgtgccgtc gatgaaccgg ccgtcccgca gctcgatggc
      481 ccggtcggcg aggtcgatca gcatcgggtc gtgcgtggcg atgatcgccg tgagctgctc
      541 gctccggacg atggcccgga ggagcgtcat gatcgaccgc cccgtccccg aatcgagctg
      601 accggtcggc tcgtcggcca ggagcaggtc cggccggttg gcgagcgccc gggcgatcgc
      661 gacccgctgc tgctcgccgc ccgacaactc gtgcggacga tggtgggcgc gcccgccgag
      721 cccgaccagc tcgaggagga tcccgacccg ctcggcgcgc tcgcgcgggt ccgccgacac
      781 gaggcgcatc gggacctcca cgttctcggc cgccgacagg atcgacagca gcccgaacgc
      841 ctggaagatg aacccgacgc ggcgccggcg caggtcgacg agctcggccg ggcgcatctc
      901 gccgaccgac tgcccgtcca cctcgacgcg gccgctcgtc ggccgatcga gaccgccgat
      961 cagggacagc agggtcgtct tgccggagcc ggaccggccg cggatcgcga ccagctcccc
     1021 acgctccacc cgcaggttca cgtcgcggac cgcatggacg acgtcggcgc cgcggacgaa
     1081 atcgcggcac aggtcgtggg tcgccacgat cggaccgtcg tagccgccgg ggcgcatggc
     1141 acgggcgtag cgggcctcga ccgaggtcat ggccgtccct ccgggcgccg ctcgggcgca
     1201 ggcggaccgt cagccggcgc cgcggcgtga ccggagacgt ccgctggatc ggcgccgtgg
     1261 gggccggccg gcgtggagcc cgggcgatcc ggccagacgc cgatgtggtc cggctcgagc
     1321 tcgagccgga cccgccgctc gaggtggagc gcctcgacgt gcgcccgggg aagctgcagc
     1381 cggccggccc gatcgagcac ggcgtactcg gtggcgatga cgtggtgctc gccggcctcg
     1441 gagatcgccc gctggcgaag gacctcgctg ctcacgcggc cgtcgcggat cgcgatcgtc
     1501 cggctgacct gttcgcttac cagcgggtcg tgggtggcga tgacgatcgt cacgcccagc
     1561 tcctggttga gccgccggaa cagctcgaag gtctggtgcg cggtcgcggt gtcgagctcg
     1621 cccgtcggct cgtcggcgag gaggacctcg gggcggttgg ccagcgcgac cgcgatggcc
     1681 gcacgctgct gctcgccgcc ggacagcgcg tccgggcggc gatggagccg atctcccagt
     1741 tcgacctggt cgagcagctc ccgcgccgcc gcttcgcggg cgcgcgg
//
LOCUS       DATDDI010000824         1624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_642327, whole genome shotgun sequence.
ACCESSION   DATDDI010000824 DATDDI010000000
VERSION     DATDDI010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642327"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VIU37_11990"
     CDS             <1..550
                     /locus_tag="VIU37_11990"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY6014727.1"
                     /translation="YYNTAAVIDSDGKYLGKYRKTHIPHVKGFWEKFYFRPGNLGYPV
                     FETAVGKIGVYICYDRHFPEGARALGLNGAELVFIPSATSRGLSEYLWRIEQVSHALA
                     NGYFVGTINRTGIEPLGDDDFYGQSYFVDPRGQFVGAVGDAHDEELLVRDLDFDCVQE
                     VRQTWQFYRDRRPEAYGDLVRP"
     gene            670..>1624
                     /locus_tag="VIU37_11995"
     CDS             670..>1624
                     /locus_tag="VIU37_11995"
                     /EC_number="3.5.2.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the hydrolytic cleavage of hydantoin with
                     aromatic side chains at the 5'position; Derived by
                     automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HEY6014728.1"
                     /translation="MRTLIKGGTIVNADSTVTADVLIDGDQIVGVGTGFDLTADRTID
                     ATGKWVIPGGIDPHVHMSLPFGGTVSKDDFETGTRAAAFGGTTTIIDFAVQPRGGTLR
                     QGLEAWHAKADGHCSIDYAFHCIVSDMRDDLLPEMDALVDDGGTTFKLFTAYPGVFLS
                     DDASIFKALRQSAHNGGLILMHAENGIAIDVVAAQTVEAGTTDPIGHGLARYPVFEGE
                     ATNRLIRLAQAAKVPVYFVHLSAKDALKEVREARDEGMPVFAETCPQYLFLSLDDLGN
                     GFEGAKFVCSPPLRDRAAGHQEELWKGLVHDDLQVVSSDHCP"
BASE COUNT          268 a          580 c          529 g          247 t
ORIGIN      
        1 ctactacaac acggccgcgg tcatcgattc ggacgggaag tacctgggca agtaccgcaa
       61 gacccacatc ccgcacgtca agggcttctg ggagaagttc tacttccggc ccggcaacct
      121 gggctacccg gtgttcgaga ccgcggtcgg caagatcggc gtgtacatct gctacgaccg
      181 ccacttcccg gagggggcgc gcgccctcgg cctcaatggc gccgagctcg tcttcatccc
      241 cagcgcgacc tcgcgcggcc tgtcggaata cctgtggcgg atcgagcagg tcagccacgc
      301 cctcgccaac ggctacttcg tcggcacgat caaccggacg gggatcgagc cgctgggcga
      361 cgacgacttc tacggccaga gctacttcgt ggatccccgc ggccagttcg tgggcgccgt
      421 cggcgacgcg cacgacgagg agctgctcgt tcgcgatctc gacttcgact gcgtgcagga
      481 ggtccgccag acctggcagt tctatcggga ccgccgaccc gaggcatacg gggacctcgt
      541 ccggccgtag cccgcggccg tcggatcggg gaacgccggg caacggcgtt ccccatggct
      601 tgcgccacgc atggcgctgc gatatcgcgg accggccgca cgcggccggc gagagccgag
      661 gagattcgag tgcgcacgct gatcaagggc ggcaccatcg tcaacgccga ttccacggtg
      721 acggccgacg tcctcatcga cggcgaccag atcgtcggcg tcggtaccgg gttcgacctc
      781 acggccgatc ggacgatcga tgcgaccggc aaatgggtga tcccgggcgg gatcgatccg
      841 cacgtccaca tgtcactgcc gttcggcggc acggtctcga aggatgactt cgagaccggt
      901 acccgggccg ccgcgttcgg cggaacgacc acgatcatcg acttcgcggt ccagccgcga
      961 ggtggcaccc tgcgccaggg gctggaggcc tggcacgcca aggccgacgg ccactgcagc
     1021 atcgactatg ccttccactg catcgtctcg gacatgcgcg acgacctcct gccggagatg
     1081 gacgcgctcg tggacgacgg cggcacgacg ttcaagctct tcaccgccta tccgggcgtc
     1141 ttcctgagcg acgacgcgtc gatcttcaag gcgctgcggc agtccgccca caacggcggg
     1201 ctcatcctga tgcacgccga gaacggcatc gcgatcgacg tcgtcgccgc gcagaccgtc
     1261 gaggccggca ccaccgaccc gatcggccac ggcctcgctc gctaccccgt gttcgaggga
     1321 gaggcgacga accgcctgat ccgcctcgcc caggcggcga aggtgccggt ctacttcgtc
     1381 cacctttccg ccaaggacgc gctcaaggag gtccgcgagg cgcgcgacga gggcatgccg
     1441 gtcttcgcag agacgtgccc gcagtacctc ttcctctcgc tcgacgacct cggcaacggc
     1501 ttcgagggcg ccaagttcgt gtgctcgccg ccgctccgcg accgggccgc cggccaccag
     1561 gaggagctct ggaagggcct cgttcacgac gacctccagg tcgtgtcctc ggaccactgc
     1621 ccgt
//
LOCUS       DATDDI010000825         2299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_101132, whole genome shotgun sequence.
ACCESSION   DATDDI010000825 DATDDI010000000
VERSION     DATDDI010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101132"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..1768)
                     /gene="gltA"
                     /locus_tag="VIU37_12000"
     CDS             complement(236..1768)
                     /gene="gltA"
                     /locus_tag="VIU37_12000"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004355 - glutamate synthase (NADPH)
                     activity [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent glutamate synthase"
                     /protein_id="HEY6014729.1"
                     /translation="MTDESTPMGASVLSKKERMAILRHGMPEQDAEGRSHNFGEVNLG
                     YVLEIARQEAERCLQCPKEYCIDGCPVAVNIPRFISFLRDGDVRSAAESLLGDNALPC
                     VTGRVCPQETQCEQVCLRAKTGKPVAIGYLERFVADWAQHHTDQLGHPRPTQTGKRVA
                     IVGSGPAGLTAAGELARAGHDVTVYEAFHAAGGVLIYGIPEFRLPKAIVQAEVDRLVA
                     DGVKIEPNAIIGKTYTLAELREQFDAIFIAVGAGLPVFMNVPGENLKGVLSANEYLTR
                     VNLMGAWNPDADTPVLHGQRVVVVGGGNVAMDSVRTARRLGAAEARIVYRRSHDELPA
                     RAEEVHHAEQEGVLFDFLVAPLEVLGNEQGWVTGLRCQRMELGEPDDSGRRRPVPIEG
                     SEFVVDCDMVVVAIGTRSNPVLTASAPDLAVNQWGYIVTDETGMTSIPGVFAGGDIVR
                     GAATVILAMGDGKRAAASIQRWLNGEPLAAPEPADAAPVVEPTDGVAHPAGQLEAAVT
                     NL"
     gene            complement(1765..>2299)
                     /locus_tag="VIU37_12005"
     CDS             complement(1765..>2299)
                     /locus_tag="VIU37_12005"
                     /inference="COORDINATES: protein motif:HMM:NF021903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014730.1"
                     /translation="WQAGGDILSPDKKSVVIDTDQAAAGIQFLHPAVERQELVERALG
                     RPGFVTQALEDVLKAGGVDAVYAVGPVPMMRAVSELTRPFGVPTLVSLNAIMVDGTGM
                     CGGCRVSIDGKTRYACVDGPEFDGHQVDFRQLSDRLTTYRTFEQGALERREACRVPAM
                     AAALIHAEEAATEGAPR"
BASE COUNT          314 a          818 c          823 g          344 t
ORIGIN      
        1 aggatgctcg agctcgaggg cgcgcccggg ttcggccagc aggtcctgtt tggctgatcg
       61 gcgggctggg gttcccgacc gcggggttcc gggcgcgccg acggatgatc gtcggtgaaa
      121 tcccgatcgc gatgatgccg aggtggaaga aacgttgcgc cccggccggg actcgggccc
      181 cggcgagcgg ctcggccggg atcgtgccgg tgcgaggact cgggcggccg cgccgctaga
      241 ggttggtgac cgccgcctcg agctggccgg cgggatgcgc cacgccgtcg gtcggttcga
      301 ccacaggtgc ggcgtcggct ggctccggcg ccgcgagggg ctcgccattg agccagcgct
      361 ggatcgacgc ggccgcgcgc ttgccgtcgc ccatcgccag gatcacggtc gcggcaccgc
      421 gaacgatgtc gccgccggcg aacacgccgg ggatgctcgt catgccggtc tcgtcggtca
      481 cgatgtagcc ccactggttg accgcgaggt ccggcgccga ggcggtcagg accgggttcg
      541 accgggtccc gatggccacg accaccatgt cgcagtcgac gacgaactcg gagccctcga
      601 tcggcacggg ccgacggcgt ccggagtcgt ccggctcgcc gagctccatc cgctggcagc
      661 gcagcccggt cacccagccc tgctcgttac cgagcacctc gagcggggcg accaggaagt
      721 cgaacagcac gccttcctgc tccgcgtggt ggacctcttc ggctcgcgcg ggaagctcgt
      781 cgtgggagcg ccgatagacg atccgcgcct cggccgcccc gagccgccgc gccgtccgga
      841 ccgagtccat cgccacgttg ccgccgccga cgaccacgac gcgctggccg tggagcacgg
      901 gcgtatccgc gtcggggttc caggcaccca tcaggttgac ccgggtgagg tactcgttgg
      961 cgctcagcac acccttgagg ttctcaccgg gcacgttcat gaacaccggc aggccggcgc
     1021 ccaccgcaat gaagatcgcg tcgaactgct cacgcagctc ggccagcgtg taggtcttgc
     1081 cgatgatcgc gttgggctcg atcttgaccc cgtcggcgac cagccggtcg acctcggcct
     1141 ggacgatcgc ctttggcagg cggaactccg ggatgccgta gatcaggacg ccgccggcgg
     1201 catggaacgc ctcgtagacg gtcacgtcgt gcccggcccg cgccagctcg ccggccgcgg
     1261 tcagcccggc cggcccggat cccacgatcg ccacgcgctt gccggtctgg gtcggcctgg
     1321 ggtggcccag ctggtcggtg tggtgctgcg cccagtcggc cacgaagcgc tcgaggtagc
     1381 cgatcgcgac cggcttgccg gtcttggcgc gcaggcagac ctgctcgcac tgcgtctcct
     1441 gcgggcagac ccgcccggtc acgcagggga gcgcgttgtc cccgagcagc gattccgcgg
     1501 cggaacggac gtcgccgtcg cgcaggaacg agatgaagcg ggggatgttg acggcgaccg
     1561 ggcaaccgtc gatgcagtac tccttggggc actgcaggca gcgctccgcc tcctggcggg
     1621 cgatctcgag gacgtagccg agattgacct cgccgaagtt gtgcgaccgc ccctcggcgt
     1681 cctgctcggg catgccgtgg cgcaggatcg ccatccgctc cttcttgctg agcacggacg
     1741 cgcccatggg cgtcgattcg tcggtcatcg tggcgccccc tcggtcgcgg cctcttccgc
     1801 gtggatgagc gccgccgcca tggccggcac gcggcacgcc tcgcgccgct cgagggcgcc
     1861 ctgctcgaag gtccgatacg tcgtgagccg gtccgacagc tggcggaagt cgacctggtg
     1921 gccgtcgaac tccgggccgt ccacacaggc gtagcgggtc ttgccgtcga tgctgacgcg
     1981 acagccgccg cacatcccgg tgccgtcgac catgatcgcg ttgagcgaga cgagcgtcgg
     2041 cacgccgaac gggcgggtca gctcgctgac ggcgcgcatc atcgggaccg gtcccaccgc
     2101 gtagaccgcg tcgaccccac cggccttcag cacgtcctcc agcgcctggg tgacgaaacc
     2161 gggacggccg agcgcgcgct cgacgagttc ctgacgctcg acggccggat gaaggaactg
     2221 gatgccggcg gccgcctggt cggtgtcgat caccacgctc ttcttgtcgg ggctgaggat
     2281 gtcaccgccg gcctgccac
//
LOCUS       DATDDI010000826         2840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_38622, whole genome shotgun sequence.
ACCESSION   DATDDI010000826 DATDDI010000000
VERSION     DATDDI010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38622"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..1270
                     /gene="glnA"
                     /locus_tag="VIU37_12010"
                     /pseudo
     CDS             20..1270
                     /gene="glnA"
                     /locus_tag="VIU37_12010"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
     gene            1326..>2840
                     /locus_tag="VIU37_12015"
     CDS             1326..>2840
                     /locus_tag="VIU37_12015"
                     /inference="COORDINATES: protein motif:HMM:NF026092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching N-terminal
                     domain-containing protein"
                     /protein_id="HEY6014731.1"
                     /translation="MTLPIQVGPATITVNRDDRFVVCQSDGRIERQAEEGFFARDTRF
                     ISGYNLWLNGKRPLLLNSSPVQFYSARFEYTNPQLLDRDGAVPPHSLSVRLDRTVSGG
                     VHEDYDIVNYGPRTVRLTIEIEIESDFADIFDVKNGELVRRGEINTRWSRAAGELRTT
                     YTHRDFVRSLVLATDKSDSRPQFANGRFVFVAEIKPKGVWHTCLKWLPMTQAKRRPST
                     LPCHSVAGPRPDQSAPRLRRVRLETPNHVVRRAWDQAQVDMDSLQLEDPAFEKGVFIP
                     AAGVPWFVTLFGRDSLIVSMQGISGYPEFAAGALRRLSELQATEDDPERDMEPGKIPH
                     EIRHGELAQLRILPFQPYYGTHDATSLFVIVMSYLYQWVGDVALLQRYLPNAEAAIRW
                     IDRFGDRDGDGFQEYATRSRHGYYNQGWKDAGDAIPNADGSLAKLPLALCELQGYVYD
                     AKLRMADVYEILGRPEDGARLRAEAIALYERFNDAFWWESEGTYYLGLDGDKRPI"
BASE COUNT          464 a          980 c          959 g          437 t
ORIGIN      
        1 catcggtcac gtcaaggcgg tgacgatccc gatccaccag ctcgagggct cggtcgagca
       61 cggcacctgg ttcgacggct cgtccatcga gggcttcacg cggatcgcag aatccgacca
      121 gtacctgatg cccgacatgg acacgttctc ggagatcccg tggcagccgg gttcgggccc
      181 gcggggtacg gcgcgcgtga tctgcgacgt gttcacgccg cgcggccagc cgttcgcggg
      241 cgatccgcgc cacgtcctgc gccgccaggt cgaacacgcc aggtcgctcg gctacgtggt
      301 caacaccggc cccgagctgg agttcttcct gctccgccgc ggtccggacg gtgagatcga
      361 gccactgccg cacgaccagg gcggctactt cgacttctcg accgacctgg cgcaggagat
      421 ccgccaggac atggtcgacg cgctcgaggc gttcgggatc cgggtggagg cggcccacca
      481 cgaggtggcg gagggccagc acgagatcga cttcgagtac tccgacgccc tgcggacggc
      541 cgacaacgcg atcaccttca agttcgcgct caaggcgatc gcccagctcc acgggctgta
      601 cgccacgttc atgcccaagc cgatccacgg gatcaacggc tcgggcatgc atacccacca
      661 gagcctgtgg tccatcgccg agggacggaa cgccttcgcc gacgccgcca acccgtacgg
      721 gctgtccgac gtggcccggt cgtacatggc cgggatcctg gcccatgccc gtgggatgat
      781 cgcggtgctg gcgcccttgg tgaactcgta caagcggctc gttcccggat atgaggcacc
      841 gacctacctc acctggggcc ggaccaatcg gtcggcgctc atccgcgtgc cgatggtctc
      901 gccgggcaag tcggtcgagg ggacgcgctg cgaggtccgc tgaccagatc cgtcctcgaa
      961 cacgtacctg gcgttcgcgg cgatgatcgc ggccgggctc gacggcgtgg agcgcggcct
     1021 gcagctggcc gaaccggtgg aggagtcgct gttcgagatg gacgccgcga cgatcgcggc
     1081 acgtgggatc agcgagctgc cgggaacgct cggagaggcg ctcgacgagc tcgaggcgga
     1141 cccggtcatc cgcgacgcgc tgggcgacca cgtcttcggc cactacatcg acgccaagcg
     1201 ggccgagtgg gacgagtacc ggacccaggt ctcggactgg gaggtcgatc ggtacctgga
     1261 ccagttctag cggagcgagg tgccgctatc gtggtggccg tgaagaacct cacgaggcgc
     1321 gcgggttgac cctcccgatc caggtcgggc cggcgacgat caccgtcaac cgcgacgacc
     1381 ggttcgtcgt ctgccagtcg gacggtcgga tcgagcgcca ggccgaggag gggttcttcg
     1441 cccgggacac gcgcttcatc tcgggctaca acctgtggct caacgggaag cgcccgctgc
     1501 tgctcaactc gtcgccggtc cagttctact cggcccgctt cgagtacacc aacccgcagc
     1561 tcctcgatcg tgacggcgcg gtgccgccgc acagcctctc ggtcaggctc gaccggaccg
     1621 tgtcgggcgg cgtccacgag gactacgaca tcgtcaacta cggcccgcgg accgtccgcc
     1681 tcacgatcga gatcgagatc gagtccgact tcgccgacat cttcgacgtc aagaacggcg
     1741 agctggtccg gcgcggcgag atcaacaccc gctggtcgcg ggcggcgggc gagctgcgca
     1801 cgacgtacac ccatcgcgat ttcgtccgct ccctcgtgct tgccacggac aagtccgaca
     1861 gccggccgca gttcgccaac ggacgcttcg tgttcgtcgc cgagatcaag ccgaagggcg
     1921 tctggcacac ctgcctgaag tggctgccga tgacccaggc caaacggcgg ccgtcgacct
     1981 tgccctgcca ctccgtagcc ggcccgcgcc ccgaccagag tgcgccccgg ctccgtcggg
     2041 tgcggctgga gacgccgaac cacgtggtcc gccgcgcctg ggaccaggca caggtcgaca
     2101 tggattcgct ccagctcgag gatccggcgt tcgagaaggg cgtgttcatc ccggccgccg
     2161 gcgtgccgtg gttcgtgacg ctgttcgggc gcgactcgct gatcgtgtcg atgcagggga
     2221 tcagcggcta cccggaattc gccgccggcg cattgcgccg gttgtcggag ctgcaggcaa
     2281 ccgaagacga tcccgagcgc gacatggagc ccggcaagat cccgcacgag atccgccacg
     2341 gcgagctggc ccagctcagg atcctgccat tccagccgta ctacggcacg cacgacgcga
     2401 ccagcctgtt cgtgatcgtg atgtcgtacc tctaccagtg ggtcggcgat gtcgcgctgc
     2461 tccagcgtta cctgccgaat gccgaggccg cgattcgctg gatcgatcgg tttggcgacc
     2521 gcgacggcga cgggttccag gagtacgcga cccgatcccg ccacggctac tacaaccagg
     2581 gctggaagga cgcgggcgac gcgatcccca atgccgacgg gtcgctcgcc aagctgccac
     2641 tcgccctgtg cgagctgcag ggctatgtct acgacgccaa gctccggatg gccgacgtct
     2701 acgagatcct gggtaggccc gaggacggcg cgcggctgcg cgccgaggcg atcgcgctgt
     2761 acgagcggtt caacgacgcg ttctggtggg aatcggaggg cacgtactac ctcggtctcg
     2821 acggcgacaa gcgcccgatc
//
LOCUS       DATDDI010000827         1525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_184616, whole genome shotgun sequence.
ACCESSION   DATDDI010000827 DATDDI010000000
VERSION     DATDDI010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184616"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VIU37_12020"
     CDS             <1..595
                     /locus_tag="VIU37_12020"
                     /inference="COORDINATES: protein motif:HMM:NF014819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY6014732.1"
                     /translation="ASRPFDRARDGFVIGEGSGVVVLEALEHAEARGATIFAELAGYG
                     ATADASHITLPAPGGIGAVRAARRALEKAGMDATGIDHVNAHATSTPEGDPAELQAIR
                     TIFGDRAEQIPITANKSMLGHTLGAAGAIEAIASILTIRDGCIPPTINLTDPDPQAAG
                     LDLTPNRAAKRRVDAVLSNSFGFGGQNTALILRRWDG"
     gene            592..1131
                     /locus_tag="VIU37_12025"
     CDS             592..1131
                     /locus_tag="VIU37_12025"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY6014733.1"
                     /translation="MTGDPATGAVTGPATVDSADAATGGDAELLGLIDRLAELLQRSD
                     LLELEVESGGTGLILRKAVAQAVAMPSTVPSPPSGTETAAHPGGEPAAGLEPAPPAIP
                     SVKAPLTGIFYASPAPGSAPYVQAGGEVAVGQVIGLIEAMKLFNEIKSDLAGRVVRVL
                     PESGALVKAKQPLIEVEPL"
     gene            1134..>1525
                     /locus_tag="VIU37_12030"
     CDS             1134..>1525
                     /locus_tag="VIU37_12030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HEY6014734.1"
                     /translation="MPVRHAHVTGWGRYAPSQILTNHDLERMVETSDEWIRTRTGIRE
                     RRVAAADETTASMAAVAGLRAIRTAGIDPAEIDLILLATLTPDYWMPSTAALVKEAIG
                     NTKAAAMDVSAACSGFVYAFATAQAYVT"
BASE COUNT          228 a          559 c          542 g          196 t
ORIGIN      
        1 ggcctcacgg ccgttcgatc gcgcgcggga cggtttcgtg atcggcgagg ggtccggcgt
       61 ggtggtcctc gaggcgctcg agcacgcgga ggcacgcggc gccacgatct tcgccgagct
      121 cgccggatac ggcgcgacgg ccgacgcctc gcacatcacg ctcccggcgc cgggcgggat
      181 cggagcggtc cgggcggcac ggcgggcgct cgagaaggcg ggcatggacg cgaccgggat
      241 cgaccacgtc aacgcgcatg cgacgtccac gccggagggc gatccggccg agctccaggc
      301 catccgcacg atcttcggtg accgcgccga gcagatcccg atcaccgcca acaagtcgat
      361 gctcggccat acgctgggtg cggccggagc gatcgaggcg atcgcctcga tcctgacgat
      421 ccgcgacggg tgcatcccgc cgaccatcaa cctgaccgat cccgacccgc aggcggccgg
      481 actcgacctg acgccgaacc gcgccgcgaa acgccgggtg gatgccgtcc tgagcaactc
      541 gttcggtttc ggcgggcaga acaccgccct catcctccgg cggtgggacg gatgaccggc
      601 gacccggcca cgggagccgt gaccggtccg gcgaccgtgg attcggccga cgcggccacc
      661 ggcggtgacg ccgagctgct cgggctgatc gatcgcctgg ccgagctgct ccagcgatcg
      721 gacctgctcg agctcgaggt cgagtccggc ggcacggggc tgatcctgcg caaggcggtc
      781 gcccaggcgg tggcgatgcc ctcgaccgtg ccgtcgcccc cgtccggcac cgagaccgcc
      841 gcgcatcctg gcggcgagcc ggccgccggc ctcgagcccg cgccgcccgc gataccgtcg
      901 gtcaaggcgc cactcaccgg gatcttctac gcatcgcccg cgcccgggag cgcgccgtac
      961 gtccaggccg gtggcgaagt cgctgtcggg caggtgatcg gcctgatcga agcgatgaag
     1021 ctgttcaacg agatcaagtc cgacctcgcc ggacgcgtcg tccgagtcct cccggagagt
     1081 ggggcgctgg tcaaggccaa gcagccgctg attgaggtgg agccgctgtg agcatgcccg
     1141 tccgtcacgc ccacgtgacc ggctggggcc ggtacgcgcc gtcgcagatc ctcaccaacc
     1201 acgacctcga gcggatggtc gagacctccg acgagtggat ccggacgcgc accgggatcc
     1261 gcgagcggcg ggtcgccgcc gcggacgaga cgaccgcgtc gatggccgcc gtcgccggcc
     1321 tgcgcgccat ccggaccgcg gggatcgatc cggccgagat cgacctcatc ctgctggcca
     1381 ccctgacgcc cgactactgg atgccctcga cggccgcact cgtcaaggag gcgatcggca
     1441 acacgaaggc ggccgccatg gacgtctccg cggcctgctc ggggttcgtc tacgcgttcg
     1501 ccacggccca ggcgtacgtc acgag
//
LOCUS       DATDDI010000828         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_101207, whole genome shotgun sequence.
ACCESSION   DATDDI010000828 DATDDI010000000
VERSION     DATDDI010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101207"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1070
                     /locus_tag="VIU37_12035"
     CDS             <1..1070
                     /locus_tag="VIU37_12035"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014735.1"
                     /translation="GWVFLLNVPVVLAALVAVIALVPSTRSEGRPRIDLVGVVASSGG
                     LTLLMYGIIEAGRNGWSDSSAVVPAFAGLLVLVGFVLWEARLTARSDGHPLVDLGLFR
                     SRSFAWGVALTSFGVFGLSGLLFTLPQFFQAIVGADAQGSGFRLLPVIAGMILGALPA
                     DRVAGRLGAKLTVAAGFFVVAVGLAIGSATAVTSGDGFVAGWNLLVGFGSGLGFATSA
                     SAALVELSAERSGVGAGLIQAVTKLGPAFGATILGSVLNATYQARLDLVGLPTDVAAA
                     VQKSVFGGLAVAQEVGSAGLAGSVRAAFVAGMDDALRVTAAIAVLGVVLTLAFLPAGS
                     KRATLDAAQQGGVEGELVARG"
     gene            1048..>1510
                     /locus_tag="VIU37_12040"
     CDS             1048..>1510
                     /locus_tag="VIU37_12040"
                     /inference="COORDINATES: protein motif:HMM:NF037625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEY6014736.1"
                     /translation="MSSSLEADRPKPGLRERKKAKTRAAIQEVALRLFERQGYEATTI
                     EQIAEAAEVSPSTFFRYFPTKEDVALYDALDPLFIAAFRAQPAELSSLAAMRGAMREV
                     FGVESPEVAGQSLRASLIMRVPELRMRMLDSFVDTIELFSGLVAERAGRPAD"
BASE COUNT          162 a          523 c          563 g          262 t
ORIGIN      
        1 ggggctgggt cttcctcctc aacgtcccgg tcgtgctggc ggccctcgtc gccgtcatcg
       61 ccctcgtccc gtcgacccgg tcggaagggc gcccgcggat cgacctcgtt ggggtggtcg
      121 cgtcgagcgg ggggctgacg ctcctgatgt acgggatcat cgaggccggc cggaacggct
      181 ggtcggattc cagcgcggtc gtgccggcct tcgcggggct cctggtgctc gtcgggttcg
      241 tcctgtggga ggctcggctg accgcccggt cggacggcca cccgctcgtc gatcttggcc
      301 tcttccgctc ccggagcttc gcctggggcg tggccctgac gtcgttcggg gtcttcggcc
      361 tgtcggggct cctgttcacc ctgccccagt tcttccaggc gatcgtcggc gccgacgcgc
      421 agggatccgg gttccgcctg ctgccggtca tcgccggaat gattctcggt gcgcttcccg
      481 ccgaccgcgt cgcgggtcgc ctgggcgcga agctgaccgt ggccgccggg ttcttcgtgg
      541 tcgccgtcgg actggcgatc ggctcggcga cggccgtgac cagcggtgac gggttcgtgg
      601 ccggctggaa cctgctggtc gggttcgggt caggactcgg gttcgcgacc tcggcgtcgg
      661 ccgcgctcgt cgagctgtcg gccgagcgga gcggggtcgg cgccggcctc atccaggcgg
      721 tcacgaagct cgggccggcg ttcggtgcca cgatcctggg gagcgtcctc aacgccacct
      781 accaggctcg cctcgacctg gtggggttgc cgacggacgt ggcggccgcc gtgcagaaga
      841 gcgtgttcgg tggcctggcg gtcgcgcagg aggtcggttc ggccggcctg gccggctcgg
      901 tccgcgccgc gttcgtcgcc ggcatggacg acgccctccg ggtgacggcg gccatcgcgg
      961 tccttggcgt cgtcctgacc ctggccttcc tcccggccgg ttcgaagcgt gcaacactgg
     1021 acgcggccca gcagggagga gtggaaggtg agctcgtcgc tcgaggctga cagaccgaaa
     1081 ccggggctcc gcgagcgcaa gaaggcgaag acccgggccg cgatccagga ggtcgccctc
     1141 cggctgttcg agcgacaggg ttacgaggcg acgacgatcg agcagatcgc ggaggcggcc
     1201 gaggtctcgc ccagcacctt cttccgctac ttcccgacca aggaggacgt cgcgctctac
     1261 gacgccctcg acccgctgtt catcgcggcc ttccgggcgc agccggccga gctgagctcg
     1321 ctggccgcga tgcgtggcgc gatgcgcgag gtcttcggcg tcgagagccc cgaggtcgcc
     1381 ggccagtcgc tgcgggcctc cctgatcatg cgtgtccccg agctccggat gcgcatgctc
     1441 gattcgttcg tcgatacgat cgagctgttc tcgggcctcg tcgcggaacg cgcggggcgc
     1501 ccggccgacg
//
LOCUS       DATDDI010000829         1807 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_163656, whole genome shotgun sequence.
ACCESSION   DATDDI010000829 DATDDI010000000
VERSION     DATDDI010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163656"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VIU37_12045"
     CDS             <1..382
                     /locus_tag="VIU37_12045"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY6014737.1"
                     /translation="DIHCVTRWSKLDTIWEGVPIQAILELAAVRPTATHVVSHAEQGY
                     TANLPLSVLDDEDVLLADTFDGKPLEPEHGYPLRLLVPKKYFWKSSKWVRGLEFLDHD
                     QLGFWERYGYHNGADPWREERFSE"
     gene            492..1724
                     /locus_tag="VIU37_12050"
     CDS             492..1724
                     /locus_tag="VIU37_12050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014738.1"
                     /translation="MVALAGCAPSVTAPPATPASAAPSPSPTRTPVAGLDWRTALDVA
                     RPEDAFAPLASEGPRGRFTAGHPSHFPGQAPISDVTALGSRLVAVGYVGWDWRPVAWT
                     STDPDHWSLVEIGRAKPSEPAFAIAVTALPDGSGVVAVGRSGSHPVAWSSADGGAWTE
                     RDVPVVDGPTDWDRMTAVASGPLGILAGGSVGPELFQRQARFWRSTDGVAWTPVADDP
                     GFDGAEVTAIIPVTDGWLALGRLGTGQRTTGSVAWRSPDGDHWTRIDDADLARGWARS
                     VVRAQDGSLVAVGSEPDEIGAYVWRSIDEGRTWTLAPEEPSRTYAGGKGKARMTDVTV
                     TATGLLAVGNVVDMQFGTGESWTSTDSVHWDRSPDQPPLGQAEPSAVVPFEGKYVMVG
                     TFGAPDNYIPRVWISPPG"
BASE COUNT          235 a          662 c          663 g          247 t
ORIGIN      
        1 ggatatccat tgcgtgaccc gctggagcaa gctcgacacg atctgggagg gcgtgcccat
       61 ccaggcgatc ctcgagctgg cggcggtccg gccgaccgcc acgcacgtgg tctctcacgc
      121 cgagcagggc tacaccgcca acctgccgct gtcggtcctc gacgatgagg acgtcctgct
      181 ggctgacacg ttcgacggca agccgctcga gccggagcac ggctatccgc tgcgcctgct
      241 ggtgcccaag aagtacttct ggaagagcag caagtgggtt cgcggtctcg agttcctcga
      301 ccacgaccag ctcggcttct gggagcgcta cggctatcac aacggcgccg acccctggcg
      361 ggaagagcgc ttcagcgagt aggagccgag cgacgcgagc cctcgtgggc cggtcatccc
      421 ggctcccccg acccgcccgg cttcgcagag ccgcgcgatc gcaggttcgg cgggcggcgg
      481 ccgtcctgct ggtggttgcg ctcgccggct gcgccccgtc cgtgaccgcg ccgccggcga
      541 ctccggccag cgccgcgccg tcgccgtcac ccacacggac gccggtcgcc ggcctcgatt
      601 ggcggaccgc cctcgacgtc gcgcggcccg aggacgcctt cgcgcccctc gcctccgagg
      661 gtccgcgcgg ccggttcacc gccggccatc cgagccactt cccgggccag gcgccgatct
      721 ccgacgtcac cgcgctcgga tcccgcctgg tcgcggtcgg gtacgtcggc tgggactggc
      781 ggccggtcgc ctggacatcg accgatcccg accactggtc gctcgtcgag atcggacgcg
      841 caaagccgag cgagccggcg ttcgcgatcg cggtgacggc gttgccggac ggcagcggcg
      901 tggtcgccgt cggccggtcc gggtcgcatc ccgtcgcctg gagctcggcc gacggcggcg
      961 cgtggaccga acgcgacgtc cccgtcgtcg acggtccgac ggactgggat cggatgaccg
     1021 cggtcgcgtc cgggccgctc ggcatcctgg ccggcggaag cgtgggcccc gagctgttcc
     1081 agcgccaggc tcgattctgg cgttcgacgg acggcgtcgc gtggaccccg gtcgccgacg
     1141 atcccggctt cgacggtgcc gaggtgaccg cgatcatccc ggtcaccgac ggctggctcg
     1201 ccctgggccg gctcggcacc gggcagcgga cgaccggatc ggtcgcctgg cgctcgccgg
     1261 acggcgacca ctggacacgg atcgacgacg ccgacctggc gcgtggctgg gcccgctcgg
     1321 tggtccgcgc ccaggatggc tcgctggtcg cggtcggcag cgaaccggac gagatcggtg
     1381 cgtacgtctg gcggtcgatc gacgagggcc gcacctggac gctcgccccc gaggagccgt
     1441 cccggaccta tgccggcggg aagggaaagg cccggatgac cgacgtgacg gtcaccgcga
     1501 ccgggctgct cgcggtcggc aacgtcgtcg acatgcagtt cggcaccggc gagagctgga
     1561 cgtcgacgga ttcggtccac tgggaccgct cgccggacca gccgcccctg ggccaggcgg
     1621 aaccgagcgc ggtcgtgccg ttcgaaggga agtacgtcat ggtcggcacg ttcggcgcgc
     1681 ccgacaacta catcccgcgc gtctggatct cgccgcccgg gtagccggcg cgactggcga
     1741 tcagctgcgc cgggcgccgg ccgcggcgtg ccgatcgggc gcgaggcagc gcaggcggtg
     1801 cgtgagc
//
LOCUS       DATDDI010000830         1780 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_143120, whole genome shotgun sequence.
ACCESSION   DATDDI010000830 DATDDI010000000
VERSION     DATDDI010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143120"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            353..640
                     /locus_tag="VIU37_12055"
     CDS             353..640
                     /locus_tag="VIU37_12055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014739.1"
                     /translation="MYGTLMIGRLAAPLEQVEQVVSAWEADKGVRTPGYLGQSVLAGD
                     DGSTVVAAIRFADAESYRALSDDPEQDTWWSTKMAPLFAGDVQWIDGTWTR"
     gene            735..>1780
                     /locus_tag="VIU37_12060"
     CDS             735..>1780
                     /locus_tag="VIU37_12060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014740.1"
                     /translation="MPQSTLPRIIQGGMGVAVSSWQLARTVSRAGELGVVSGTGLDIV
                     LSRRLQDGDPDGDVRRALAAFPVRELADEVLEHYFVEGGREPGQPYLATPRPSLSPTP
                     RSQRLTVLANFVEVFLAKEGHDGVVGVNYLEKIQMTTPYCAYGAMLAGVDVVLMGAGI
                     PAHIPRLLDDLAEHRTSSIPVDVVDALPDESFAATVDPKELLGVELPPLSRPVFLAIV
                     ANHVLAQYLARDEVTRPDGFVVEAPSAGGHNAPPRGKVVLDETGQPIYGPRDVADPEK
                     FVALGLPFWLAGSFGSPARLREAESLGAQGIQVGTLFAMSQDSGFSAELRQTLLDALG
                     KDELATRTDALASPT"
BASE COUNT          241 a          678 c          609 g          252 t
ORIGIN      
        1 cggaagaggt cacaggttcg attcctgtat cgcccaccga gcacgatctc cgatcaccgg
       61 agcacgggcc acggtccgcc gggggaccag tcgcgcgcct cttgtcggcc gtgaccgtgc
      121 gggcatacgt tcctcacctg cacctgggtt cttgtgccac ctgcccgaag ccgggcccgt
      181 gagagctcgc tctcgtcgtc gccacgtcgc cgcacgcgcg gcccctcccc ccaccccatg
      241 ccccggccgc cgcagcgtcg gcgattcgac gctccgcagg caggggtccg ctccgccctc
      301 gggtagccgg ccgcgaccgc ccccggctac ggggagactc ctggaggaac agatgtacgg
      361 gacactcatg atcggacgcc tcgcggcacc cctggagcag gtcgagcagg tggtctccgc
      421 gtgggaggcc gacaaggggg tacggacgcc cggctacctc ggccagtccg tgctcgccgg
      481 ggacgacggc agcaccgtcg tggcggccat ccggttcgcc gacgccgaga gctaccgcgc
      541 gctgtccgac gaccccgagc aggacacctg gtggtccacg aagatggccc cgctgttcgc
      601 gggcgacgtc cagtggatcg acggcacctg gacgcgctga cccgggtgac gaacacctcc
      661 ccgagcggac ggcccaggag ggcgaaccta cgctaacgta ggcgtcggtt agcgtgcccg
      721 atcgaggaga ccccatgccc cagtccaccc tgccgcgcat catccagggc gggatgggcg
      781 tcgccgtgtc ctcctggcag ctcgcccgca ccgtgagccg ggccggcgag ctcggcgtgg
      841 tgtccgggac cgggctcgac atcgtgctgt cgcgtcgcct gcaggacggc gaccccgacg
      901 gcgacgtacg ccgtgcgctc gcggcgttcc cggtgcggga gctcgccgac gaggtgctcg
      961 agcactactt cgtcgagggc gggcgcgagc cggggcagcc ctacctcgcg acgccgcgcc
     1021 cgtcgctctc gccgacgccc cgctcgcagc ggctcaccgt gctcgccaac ttcgtcgagg
     1081 tgttcctcgc caaggaaggg cacgacggcg tcgtcggcgt gaactacctc gagaagatcc
     1141 agatgacgac gccgtactgc gcgtacggcg ccatgctcgc cggggtcgac gtcgtgctca
     1201 tgggcgccgg catccccgcc cacatcccac ggctgctcga cgacctcgcg gagcaccgca
     1261 cctcctcgat cccggtcgac gtcgtcgacg cgctgcctga cgagtcgttc gcggcgaccg
     1321 tcgacccgaa ggagctgctc ggcgtcgagc tcccgccgtt gtcgcggccg gtgttcctcg
     1381 cgatcgtcgc caaccacgtg ctcgcgcagt acctcgcgcg cgacgaggtc acccggccgg
     1441 acggtttcgt cgtggaggcg cccagcgccg gcggccacaa cgcccctccg cgcggcaagg
     1501 tcgtgctcga cgagacgggc cagccgatct acgggccgcg cgacgtggcc gaccccgaga
     1561 agttcgtcgc cctgggcctt cccttctggc tcgccggctc cttcgggtca ccggcgcggc
     1621 tgcgcgaggc cgagtcgctc ggcgctcagg gcatccaggt cgggacgctg ttcgcgatga
     1681 gccaggactc gggcttctcc gccgagctgc ggcagacgct gctggacgcg cttggcaagg
     1741 acgagctcgc cacccggacg gacgccctcg cctcgcccac
//
LOCUS       DATDDI010000831         1600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_205351, whole genome shotgun sequence.
ACCESSION   DATDDI010000831 DATDDI010000000
VERSION     DATDDI010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205351"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            193..783
                     /locus_tag="VIU37_12065"
     CDS             193..783
                     /locus_tag="VIU37_12065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014741.1"
                     /translation="MKRLVLPLVLAVALVAGLAVALSGGLAVAAGPETFTDPAGDAGG
                     APDVTSVTVDDDPASGIVTITVNAAGVHPDTSINVYFNTDLAGQADYWTHYQRGKTRW
                     SWSPSRWDGAAWQKITQTNSMNIVPGNDTVTWTFGKWDLGITTGFRLHVKTALKAATG
                     STVLAGDLAPDKGRWLHRLSSAAPPTSSTRRGPRRQ"
     gene            780..1112
                     /locus_tag="VIU37_12070"
     CDS             780..1112
                     /locus_tag="VIU37_12070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014742.1"
                     /translation="MTTTPVQTADIRPLIGKPTIVPTRAIAGKRLTVSFPVTRGIDGS
                     PLPSGRMICDPSVAGKPIPHSEQLRNGTARLALTLPTYAKGKLLTVKVTIKLGTKAST
                     RTATFRVA"
     gene            1290..>1600
                     /locus_tag="VIU37_12075"
     CDS             1290..>1600
                     /locus_tag="VIU37_12075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014743.1"
                     /translation="MKRKWVILASAAVVGAAAATAVLVAVAAPGGSQTATSAPSANRA
                     EQIRVQGHWKLEVRNPDGRTVLVRRFHNDPANANQAIATILARAYTAGFWWITLGSTT
                     GA"
BASE COUNT          267 a          584 c          537 g          212 t
ORIGIN      
        1 ttcgtctact tcaagcgggg cccggccggc gagatcaccg aggatccgac gccgctggcc
       61 tccccgtgcg cctgacgcac ccggccacac gcgcgcctcg aacggcccgg ccgcttgcgc
      121 gcaagtaccg atgacaccga cgaccggccg tcggacgatt cgactgcggg cggacacgag
      181 gaggttggga tcatgaagcg gcttgtcctg ccgctcgtcc tggcggtcgc gctcgttgcc
      241 gggctcgcgg tggcactgtc aggcggcctc gccgtggcag cgggaccgga gaccttcacc
      301 gacccggcag gtgatgcggg cggcgcgccc gacgtcacga gcgtgactgt cgacgacgac
      361 cctgcgagcg ggatcgtcac gatcaccgtc aacgccgccg gtgtccatcc cgacacgagc
      421 atcaacgtct acttcaacac cgacctcgcc ggccaggccg actactggac gcactatcag
      481 cggggtaaga cccggtggag ttggtcgccc tcccgctggg acggcgccgc ctggcagaag
      541 atcacccaga ccaactcgat gaacatcgtc cccggaaacg acaccgtcac ctggacgttc
      601 ggcaaatggg atctcggcat cacgaccggc tttcggctgc acgtgaagac ggcgctcaag
      661 gccgcgaccg ggtcgaccgt gctcgccggc gacctcgcac ccgacaaggg ccgctggctc
      721 caccgactct cgagtgccgc gccgccgaca tcgtcgaccc gccgaggacc tcgacgacag
      781 tgacgacgac accggtccag accgccgaca tccggccgct gatcggcaag ccgacgatcg
      841 tgccgacgag ggcgatcgcg ggcaagcggc tgacggtcag cttccccgtc acccgcggca
      901 tcgacgggag cccgctcccg agcggaagga tgatctgcga cccgtccgtc gcggggaagc
      961 cgattccgca cagcgagcag ctcaggaacg ggaccgcgcg acttgcgctc accctcccca
     1021 cctacgcgaa gggcaagctg ctgacggtga aggtcacgat caagctcggt acgaaggcga
     1081 gcacgaggac tgcgaccttc cgcgtcgcct gaaccgcggc ggccgctcga gccgtgctgc
     1141 cgcgcgtcaa acggccgcgc cactctgtca gctgtcttgc gaacaggcca cgtatcgtcc
     1201 tcccagatgg gacgttcggc ccattgcagc gaccgttccc cggtgtgacg ctgtgacgtg
     1261 cggggggccg ccgtcatagg aggggagcga tgaagcgcaa gtgggtgatc ctcgcgtccg
     1321 cggccgtcgt cggcgccgcc gccgcgacag ccgtcctcgt cgccgtcgcg gcgccgggcg
     1381 gctcgcagac ggcgacgtcc gcgccgtccg cgaaccgcgc cgagcagatc cgcgtccagg
     1441 gacactggaa gctcgaggtg cgcaacccgg acggacgcac ggtgctcgtg cggcggttcc
     1501 acaacgaccc ggcgaacgcg aaccaggcga tcgcgacgat cctggcgcgc gcctacacgg
     1561 cgggcttctg gtggatcacg ctcggctcga ccaccggcgc
//
LOCUS       DATDDI010000832         4361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_351115, whole genome shotgun sequence.
ACCESSION   DATDDI010000832 DATDDI010000000
VERSION     DATDDI010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4361
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351115"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VIU37_12080"
     CDS             <1..307
                     /locus_tag="VIU37_12080"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6014744.1"
                     /translation="YLSNAIRYSPDSAEVRVVGRRSGREVIVSVRDTGPGLTAEQRAH
                     VFERFYRVDPSRSRALGGAGIGLAIAHALAAAMGGRAWADSDGPGHGSTFSVALPAA"
     gene            446..634
                     /locus_tag="VIU37_12085"
     CDS             446..634
                     /locus_tag="VIU37_12085"
                     /inference="COORDINATES: protein motif:HMM:NF021378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEY6014745.1"
                     /translation="MLIWIAALFVMVWLIVRGPADRPADEDAIAILRARFARGEISQD
                     EFERARDALIADRREFTR"
     gene            631..924
                     /locus_tag="VIU37_12090"
     CDS             631..924
                     /locus_tag="VIU37_12090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014746.1"
                     /translation="MTRRLAGAVVAGAFALGLAAGAAGTIAAHDTTAPRTDFDVLMAD
                     HMAGYDMGSMMSGSMMGPGSSFGPGMMSGLGGSSMPDSLHDLHHPTATPDAPK"
     gene            921..1463
                     /locus_tag="VIU37_12095"
     CDS             921..1463
                     /locus_tag="VIU37_12095"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEY6014747.1"
                     /translation="MSGDEHQVRAERRAALLEERRLERKRTQSAEFQAAQRRTDRIRK
                     GIFGLVVAVVLGGGVYLAAGDLLGQRGSASTAGAIPVRLSMAGFEPGEIRVPAGQTVS
                     IELWTTDAAPHLAGGVHTMISDELGIHEELPAAGMTGESRRVVTIRTPATPGTYDIWC
                     DTCCGGKDSPTMHGKLTVEA"
     gene            1468..2367
                     /locus_tag="VIU37_12100"
     CDS             1468..2367
                     /locus_tag="VIU37_12100"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEY6014748.1"
                     /translation="MPASPISNDPAPEGSPGATPVDTRPASPLILGFPRPAVVLAAAL
                     AVVGLGSSLFLLAVPFDTAAFGGLTIPVVLGSGVADGFNPCAFALLVLFATYTLTLVN
                     AVTSDGSPTLEARRRLLGAGSLYVGAVWVTYFIIGLGLLSFLGWLGQDHFVARAAAVL
                     ALAMGLWMLKDVLVPGWGPSMMAPAGTHGRMQRAIERGGLAGMLIAGVLVGICTVPCS
                     GAIYLDIVAVLHASGGGATGLALLALYNLAFITPLVVLLVAVSNRRVLGQLGRWNRAN
                     SPWIKAGLALAVLAMSFGLLVTM"
     gene            2364..2648
                     /locus_tag="VIU37_12105"
     CDS             2364..2648
                     /locus_tag="VIU37_12105"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEY6014749.1"
                     /translation="MIETIRFPIAGMTCASCVNRLTRALRRLDGVEGVEVDLRHETVT
                     VRRVPSRVSTGELGVAVAEAGYAADLEAATVLPQNSRRPAFLRRLLARGS"
     gene            complement(2656..3141)
                     /locus_tag="VIU37_12110"
     CDS             complement(2656..3141)
                     /locus_tag="VIU37_12110"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEY6014750.1"
                     /translation="MTQLYLLRHADAGDPLAWGGPDERRPLSDKGQKQAERLGRFLAA
                     IGFRPDAILTSPKTRAAQTAEVVAGHLGLPVSVDERLGDELGLPELERLLRDAGDPDR
                     TVIVGHDPDFSDLVAGLCGTDAVPMRKGALARIDVGRPLEPGGGTLRWLVPPDLLKPE
                     R"
     gene            complement(3155..3610)
                     /locus_tag="VIU37_12115"
     CDS             complement(3155..3610)
                     /locus_tag="VIU37_12115"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HEY6014751.1"
                     /translation="MRVLFVCTGNSARSVMAEALLRTRGGDRFEVHSAGTDPKGINPL
                     TLKTLAAAGVDASWARSKSVAEYLGQRFDYVVTVCDQARQACPVFPGVHESLHWGYDD
                     PAEATGTEEERLAVFRRVFIQIGERINQFVPLALRARREDDATTAPGSR"
     gene            complement(3622..>4361)
                     /gene="phoU"
                     /locus_tag="VIU37_12120"
     CDS             complement(3622..>4361)
                     /gene="phoU"
                     /locus_tag="VIU37_12120"
                     /inference="COORDINATES: protein motif:HMM:TIGR02135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEY6014752.1"
                     /translation="TMDAQANDGIDDAAASEATTAAPAHAAAPRETLDREEQLIRDSV
                     LRMGSLVEAAIRQASRALTSHDTALAMDVITGDAIINEAQRGVSRLIAVTIATQQPVA
                     RDLRYLLTLDHVTYELERMGDHASSLAKQTLKLAPEPPLEGYVHLPEMAERGAVLIHG
                     ILRALVDSDAIQAREIAVQDDEIDRLYHATFDKVLELMRQDPANVERGTRIIIASHYL
                     ERIGDRATNIAEDVVYLVTGDVEDLNP"
BASE COUNT          567 a         1542 c         1586 g          666 t
ORIGIN      
        1 ctacctgtcc aacgcgatcc gctacagccc ggacagcgcc gaggtccggg tcgtcggccg
       61 ccgctccggt cgcgaggtca tcgtgtccgt gcgcgacacc ggccccgggc tcaccgccga
      121 acaacgggct cacgtcttcg agcggttcta ccgcgtggac ccgtcccgat cgcgcgccct
      181 cggcggcgcg gggatcgggc tcgcgatcgc gcatgccctc gcggccgcca tgggcggccg
      241 ggcgtgggcc gactcggacg gccccggcca tggctcgacg ttctcggtgg cgctccccgc
      301 cgcttgatcg aatcttgagg cgaaatcgac cggcgctcca tggaccgcgc gccggggcgg
      361 gcggaaggta gtcgcggcgc tcggcatccg gccgagccga acgacgggag accggaccgt
      421 gatgggtccc tgggcatgga tctggatgtt gatctggatc gccgccctgt tcgtcatggt
      481 ctggctgatc gttcgcggtc ccgccgaccg acccgccgac gaggacgcga tcgcgatcct
      541 ccgcgcgcgg ttcgcccgcg gcgagatcag ccaggacgag ttcgagcggg cgcgcgacgc
      601 cctgattgcc gatcgacggg agttcaccag atgaccagga gacttgccgg cgcggtggtc
      661 gccggagcct tcgccctcgg gctcgccgcc ggggccgccg gcacgatcgc cgcccacgac
      721 acgaccgcac cgcgcaccga cttcgacgtg ctgatggccg atcacatggc cggctacgac
      781 atgggctcga tgatgtcggg ctcgatgatg ggtccaggct cgtccttcgg ccccggcatg
      841 atgtccgggc tgggcggatc ctcgatgccc gacagcctgc acgatctgca ccatccgacc
      901 gccactccgg acgccccgaa atgagcggcg acgagcacca ggtccgggcc gagcggcgag
      961 cggcgctcct ggaggagcgg cggctcgaac ggaagcgcac ccaatccgcc gaattccagg
     1021 ccgcgcagcg ccgtaccgac cggatccgca aggggatctt cgggctggtc gtcgcggtcg
     1081 tcctcggggg cggcgtctac ctcgccgccg gcgatctcct gggccagcgt ggatcggcgt
     1141 ccaccgcggg cgccattccg gtccgcctga gcatggccgg cttcgagccg ggcgagatca
     1201 gggtcccggc cggccagacc gtgtcgatcg agctgtggac gacggatgcc gcgccacacc
     1261 tcgctggcgg cgtgcacacg atgatcagcg acgagctcgg gatccacgag gagctgcccg
     1321 cggccggcat gaccggcgag agccgcaggg tcgtcacgat caggacgccg gcgacgcccg
     1381 ggacctacga catctggtgc gacacctgct gcggcggcaa ggacagcccg acgatgcacg
     1441 gcaagctcac ggtggaggcc tagccgggtg cccgccagtc ccatatccaa cgaccccgcc
     1501 cccgaggggt ctcccggggc gacgccggtt gacacccggc cggcgtcgcc cctcatcctt
     1561 ggtttcccgc gaccggcggt cgtgctcgcg gccgcgctgg ccgtggtcgg cctcggatcc
     1621 agcctgttcc tgctggccgt cccgttcgac acggccgcgt ttggcggcct gacgatcccg
     1681 gtggtcctcg ggtcgggcgt cgcggacggg ttcaacccgt gcgccttcgc cctcctcgtc
     1741 ctgttcgcga cctacacgct gacgctggtc aacgcggtga cctccgacgg cagccccacc
     1801 ctcgaggcgc gccggcggct gctcggggcc gggtcgctct acgtcggagc ggtctgggtg
     1861 acgtacttca tcatcgggct cggcctgttg agcttcctcg gctggctcgg ccaggaccat
     1921 ttcgtggcac gcgcggcggc cgtcctggcg ctcgccatgg gtctgtggat gctcaaggac
     1981 gtcctcgtcc ccggctgggg tccgtcgatg atggcgccgg ccggcacgca tggccggatg
     2041 cagcgcgcga tcgagcgcgg cgggctggcg gggatgctga tcgcgggcgt gctcgtcggg
     2101 atctgcacgg tgccgtgctc gggggcgatc tacctcgaca tcgtggcggt cctccacgcc
     2161 tcgggcggcg gtgccacggg gctcgccctg ctggcgctct acaacctcgc cttcatcacg
     2221 ccgctggtgg tcctcctggt cgccgtgagc aaccgccgcg tcctcggaca gctcggccgc
     2281 tggaaccgcg ccaactcgcc gtggatcaag gccgggctcg cgctcgccgt cctggcgatg
     2341 agcttcggcc tcctggtgac gatgtgatcg agaccatccg gttcccgatc gcgggcatga
     2401 cctgcgcctc gtgcgtcaac cggctgacgc gcgcacttcg acggctcgac ggcgtcgaag
     2461 gggtcgaggt cgacctgcgc cacgagacgg tgaccgtccg gcgggtaccg agccgggtgt
     2521 cgaccggcga gctcggggtc gcggtcgccg aggccgggta cgccgccgac ctggaagcag
     2581 cgacggtcct gccgcagaac tcgcggcggc ccgcgttcct gcggaggctg cttgcccgcg
     2641 ggagctgatc cctcgtcagc gctcgggctt tagcaggtcc ggcggcacca gccagcggag
     2701 cgtgccgccg ccgggctcga ggggacggcc gacatcgatc cgggcgagcg cgcccttgcg
     2761 catcggtacc gcgtccgtac cgcacaggcc ggcaacgaga tcgctgaagt ccgggtcgtg
     2821 gccgacgatc accgtgcgat cgggatcgcc cgcatcacgc agcagccgct ccagctcggg
     2881 caggccgagc tcgtcgccca gccgctcgtc gacgctcacc ggcaggccga ggtggccggc
     2941 gacgacctcc gcggtctgcg cggcccgggt cttcggtgag gtgaggatcg catcgggacg
     3001 gaagccgatc gcggccagga accggccgag ccgctccgcc tgcttctggc ccttgtccga
     3061 cagcggccgg cgctcgtccg gaccgcccca ggcgagggga tcgccggcgt cggcatgacg
     3121 gaggagatac agctgggtca ccgcaacgcc gagcctagcg tgatccgggc gccgtcgtcg
     3181 cgtcgtcctc gcggcgagcc cgaagcgcga gcgggacgaa ctggttgatg cgctccccga
     3241 tctggatgaa gacccgccgg aagaccgcca ggcgctcttc ctcggtgccg gtggcctcgg
     3301 cggggtcgtc gtagccccag tggagcgact cgtggacgcc cgggaagacc gggcaggcct
     3361 ggcgggcctg atcgcatacg gtgacgacgt agtcgaagcg ctggccgaga tactcggcga
     3421 cggacttgga gcgcgcccac gacgcgtcga cgccggccgc ggcaagcgtc ttcagggtga
     3481 gcgggttgat ccccttcggg tcggtgccgg cggagtggac ctcgaaccgg tcgccgcccc
     3541 tcgtccgcaa cagggcttct gccatcacgc tgcgggcaga gttcccggtg cacacgaaca
     3601 ggacgcggat gggcgcctcg ctcacgggtt caggtcctcc acgtcgccgg tcaccaggta
     3661 gaccacgtcc tcggcgatgt tcgtggcgcg gtcgccgatc cgttcgaggt agtgggaggc
     3721 gatgatgatc cgcgtgcccc gctcgacgtt ggccgggtcc tggcgcatga gctcgaggac
     3781 cttgtcgaag gtcgcgtggt agagcctgtc gatctcgtcg tcctggaccg cgatctcgcg
     3841 ggcctggatg gcgtcggaat cgacgagcgc gcggaggatg ccatggatca gcaccgcgcc
     3901 gcgctcggcc atctccggca ggtggacgta gccctcgagc ggcggctcgg gcgcgagctt
     3961 gagcgtctgc ttggcgagcg acgaggcatg gtcgcccatc cgctcgagct cgtaggtgac
     4021 gtggtccagc gtcagcaggt agcgcagatc gcgcgcgacc ggctgctggg tggcgatcgt
     4081 gacggcgatc agccgggaga cgccgcgctg ggcctcgttg atgatcgcgt cgccggtgat
     4141 gacgtccatc gccagcgccg tatcgtggct ggtcagcgcg cggctcgcct gtcggatggc
     4201 cgcctcgacc aggctgccca tccgcaggac cgaatcccgg atgagctgct cctctcggtc
     4261 gagcgtttcg cgcggcgcgg ccgcgtgggc cggtgcggca gtggtggcct cggacgccgc
     4321 cgcgtcgtcg atgccgtcgt tggcctgagc gtccatcgtg c
//
LOCUS       DATDDI010000833         1765 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_746180, whole genome shotgun sequence.
ACCESSION   DATDDI010000833 DATDDI010000000
VERSION     DATDDI010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746180"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VIU37_12125"
     CDS             complement(<1..580)
                     /locus_tag="VIU37_12125"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEY6014753.1"
                     /translation="MNRLCGSGLQAINAAAHAIAVDDGDVFIAGGVESMTRAPFVLGK
                     AEAAWDRTATNLQDTTLGWRFVNPKLSALHHPYTMGETAENVVARYGSERNVTRERQD
                     AFALQSHRRAIAAIEGGRFDSQIVPVPVPQKKGEPVVVSRDEHPRADTSLEALARLRP
                     AFREGVSVTAGNSSGINDGAAATLVVEAERARA"
     gene            626..1639
                     /locus_tag="VIU37_12130"
                     /pseudo
     CDS             626..1639
                     /locus_tag="VIU37_12130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
BASE COUNT          225 a          624 c          665 g          251 t
ORIGIN      
        1 gtgcccgagc ccgttccgcc tcgacgacga gcgttgccgc ggctccgtcg ttgatcccag
       61 acgagttgcc ggcggtcacg gaaacgccct cgcggaacgc cgggcggagc cttgcgagcg
      121 cctccaggga cgtgtcggct cgcgggtgct cgtcgcgcga gaccacgacc ggctcgccct
      181 tcttctgcgg taccggcacg ggcacgatct gcgagtcgaa ccggccgccc tcgatcgcgg
      241 cgatggcccg ccggtgtgac tgcagggcga aggcgtcctg ccgctctcgg gtgacattgc
      301 gctccgagcc gtaccgcgcg accacgttct cggccgtctc gcccatcgtg tatgggtgat
      361 ggagcgcgga gagcttcggg ttgacgaacc gccagccgag cgtcgtgtcc tgcaggttcg
      421 tcgcggtccg atcccatgcc gcctcggcct tgccgagcac gaacggcgcg cgcgtcatcg
      481 actcgacgcc gccggcgatg aacacgtcgc cgtcgtcgac ggcgatcgcg tgcgccgccg
      541 cgttgatcgc ctgcagcccg gagccgcaca ggcggttcac ggtctggccc gcgacctcga
      601 ccggtaggcc ggcgaggaca accgcaacgt cgcccggatg gcgctcctgc tggcggggtt
      661 gccggtcgag gtcggcgggc tgaccgtcaa ccgcctctgc ggctcagggc tccaggcgat
      721 caactcggcc gcgcacgcga tcgcggtcga cgacggcgac gtgttcatcg ccggcggcgt
      781 cgagtcgatg accagggctc cctacgtcat gccgaagccg gaggccgcct gggagcgggg
      841 gacacgcgag gcctacgaca cgacgctcgg ctggcgcttc gtcaacccga agctcgccgc
      901 gctccactac ccgtactcga tgggcgagac ggcagagaac gtcgcggacc gctggtcggt
      961 cacgcgcgag cgccaggacg agttcgcgct ccggtcgcag cagcgcgcgg tggcggcgat
     1021 cgaggccggc gtgttcgacg gccagatcgt gccggtcgag gtgccgcagc ggaagggcga
     1081 gccgctggtg gtggcgcgcg acgagcaccc gcgcgcggac tcgtcgctgg aggcgctcgc
     1141 gaagctcaag ccggccttcc gtgacggtgg ctcggtcacg gccgggaaca gctccggcat
     1201 caacgacggc gcctccgcgg tcctcgtcgt cgaggccgat cgtgcccgcg agctcggcct
     1261 cgcgccgatg gtccgggtcg tcgcgaccgc ggtcgccggc gtcgatccgg cggtcatggg
     1321 catcgggccg gtgccggcgg ttcggaaggt gctgaagcgg gcggggctca ccgccgccga
     1381 cctcgatctc gtcgagctca acgaggcgtt cgcatcccag tcggtcgtgt gcatcgacga
     1441 gctgggcctc gccccggacc gggtcaacgt caacggcggc gcgatcgccc tcggccaccc
     1501 gctcggggcc agcggcggcc ggctggtgac gatgctcgtc cacgagctgg cgcggcgtgg
     1561 tgggcgctac ggcctggcga cgatgtgcat cggggtcggc cagggaatcg ccacgatcgt
     1621 ggagcggatc gaggcctgag ggtcagccct ccgcgagcgc ctcgagggcg cggcccaggg
     1681 cgtcctccag gctggcctcg ctcgtcgcgg tcgccgcggc ggcggaggcg cggaccgcga
     1741 tcggggcgtt ggcggcgttc agcca
//
LOCUS       DATDDI010000834         2830 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_559535, whole genome shotgun sequence.
ACCESSION   DATDDI010000834 DATDDI010000000
VERSION     DATDDI010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_559535"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VIU37_12135"
     CDS             <1..423
                     /locus_tag="VIU37_12135"
                     /inference="COORDINATES: protein motif:HMM:NF024959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY6014754.1"
                     /translation="DPDALCRAELRLEGLRGAWTARFASLIHDVPRAIHWDTAGLFVV
                     AYGFHTFGLEVAGGELRWEHRSATPLIALFGSSRLAHVVVQSELETFAIEPDGTVAWR
                     VAHSDVVTGAELVGGRLVLTGFGGQLSAIDPATGRAAG"
     gene            634..1347
                     /locus_tag="VIU37_12140"
     CDS             634..1347
                     /locus_tag="VIU37_12140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014755.1"
                     /translation="MSPLAPLIAGVVALAVGALLLRTYGTSYRVGRLLASTPVVEVAE
                     ARTLAASGPRYVAIEGRIDSETDFEDAAHRPLVFRRTRLQLRGPAGWTDLDDQRERVP
                     FEIREGLDSIGVDDAALDDGLVVVVRESEGTAADIADRVPDGTPPGTPARLRIEQVSS
                     VEHAIVVGVPVLDATGAPVMSAGRGRPLILTTLERPEAMRILARGESRRPALALASLA
                     GGFVLVSAGLALALIGAVS"
     gene            1344..1592
                     /locus_tag="VIU37_12145"
     CDS             1344..1592
                     /locus_tag="VIU37_12145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014756.1"
                     /translation="MTLRAALAAAISAAAAWLSTAATSLAASPGPSAAVGGDPRSAGQ
                     GPGLVGDPAFAIIAVVAIGLGAVVVTLAWVRLTAPRRG"
     gene            1676..>2830
                     /locus_tag="VIU37_12150"
     CDS             1676..>2830
                     /locus_tag="VIU37_12150"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY6014757.1"
                     /translation="MPQTFPSRPTDATLSVTKAARLLGVHPNTIRTWSDAGRLRYFRI
                     NSRGDRRYRLGDLQRFLASAAPPGGTSAVAVHAGGRRTGTPGAGEVLAGSTRAHDGDV
                     DPLAAERHRLDLAVTTALARLASATHDGSDAFEAAAGIIRDTYGHRHVSIWELHADRL
                     SPTVVAVASDAVEPRLTDLPRSFGILGAALGAGDQGVAASDDGVLLVNVHETAVLPVV
                     PDGRPELAIAIPGPDGPWGLLLIAGETTGSLGPPDLEAARACAASLGALVSITRRGAE
                     IEHLRHRAEALRRVASDIGSRLDLNRILTGLVDHAMVLFEGDAAAVFLQHKDGTIAAE
                     VSRGLSNEFLSSLRSFPPRSLPAAAIKANQPLFSVGYRDDPRGADVRAAVV"
BASE COUNT          350 a         1043 c         1015 g          422 t
ORIGIN      
        1 gacccggacg cgctgtgccg cgcggagctg cgactcgagg gtttgcgcgg ggcgtggacc
       61 gcgcggttcg cctcgctgat ccacgacgtg cctcgcgcga tccattggga cacggccggc
      121 ctgttcgtcg tcgcctacgg cttccacacg ttcggtctgg aggtcgccgg tggcgaactc
      181 cgctgggaac accggtcggc gacgccgctg atcgccctgt tcggctcgtc gcgactggcc
      241 cacgtggtgg tccagtcgga gctcgagacg ttcgccatcg agcccgacgg aaccgtcgcc
      301 tggcgggtgg cccattcgga cgtcgtgacc ggggcggagc tggtcggcgg gcgcctggtc
      361 ctgaccgggt tcggcgggca gctgagcgcg atcgaccccg ccacgggacg cgccgccggc
      421 tgacgacggg ccggatgtgg acagacggtg gataacccgg gcggctgtgg acaaagtggt
      481 ggacgacacc gttgacccgg gccgacggag gcgcctagtg ttgaggtcag cccggagggg
      541 ccgagcgaca ctaatggccg agatcgcctc aaggcccatg tgtcgggtag gttccttcgg
      601 gccctttcat gtccggcgcg tatcatcccc gccgtgtcac ccctcgcacc cctgatcgcg
      661 ggcgtcgtcg ccctggccgt cggggcgctg ctgttgcgga cgtacggcac gagctaccgg
      721 gtcggccggc tgctggcctc gacgccggtc gtcgaggtcg ccgaggcccg aaccctcgcc
      781 gcgagcggac cgcgctacgt ggccatcgaa ggccggatcg actcggagac cgacttcgag
      841 gacgccgcgc accgcccgct cgtgttccgc cggacccgcc tccagctccg cggcccggcc
      901 ggctggaccg acctcgacga ccagcgcgag cgcgtcccgt tcgagatccg cgagggcctg
      961 gattcgatcg gcgtcgacga cgcggcgctc gacgacggcc tcgtcgtggt cgtccgcgaa
     1021 tcggagggaa ccgcggccga catcgcggac cgggtgcctg acgggacgcc gcccggaacg
     1081 ccggccaggc tccgcatcga gcaggtctcc tcggtggagc acgcgatcgt cgtgggtgtg
     1141 ccggtgctcg acgccaccgg ggcgcccgtg atgtcggcgg gtcgcgggcg gcccctgatc
     1201 ctgaccacgc tcgagcgtcc cgaggcgatg cggatcctgg ctcgtggcga gtcgcggcgt
     1261 cccgcgctgg ccctggcctc gctggccggc gggttcgtgc tggtcagcgc cggcctggcc
     1321 ttggcgctca tcggcgccgt ctcatgaccc ttcgcgcggc actggcggca gcgatttccg
     1381 ccgcggcggc ctggctgtcg actgcggcaa cgtcgctggc cgcctccccc ggcccgagcg
     1441 cggccgtcgg cggcgacccc cgcagtgccg gtcagggccc gggactggtg ggcgatccgg
     1501 cattcgcgat catcgccgtc gtggccattg ggttgggcgc ggtcgtcgtc accctggcct
     1561 gggtccgact caccgcgcca cggcgaggct gacgcgaccg ggaccatcgg cctattggca
     1621 agaactgtga gcttgttagg ctcctcgcgt cgagttcaca tttcctccat ggacgatgcc
     1681 gcagaccttc ccctctcgcc caacggacgc gaccctgtcg gtcaccaagg ctgccaggct
     1741 gctgggcgtg catccgaaca cgatccgaac gtggagtgac gccgggcgcc tgcgctactt
     1801 ccggatcaac tcccggggcg accggcgcta ccggctcggc gacctgcagc ggttcctggc
     1861 ctccgccgcg ccacccggcg ggacatccgc ggtcgcggtc catgccggcg gccgtcgaac
     1921 gggcacgccg ggcgcaggcg aggtcctcgc agggtcgaca cgagcacacg atggcgacgt
     1981 ggatcccctg gcggccgaac gccaccggct ggacctcgcg gtcacgaccg ccctcgcccg
     2041 gctggctagc gccacccatg acggatcgga cgccttcgag gcggcggccg ggatcatccg
     2101 cgacacctac ggccatcgcc atgtctcgat ctgggagctc catgcggacc ggctgagtcc
     2161 gacggtcgtg gccgtcgcgt ccgacgccgt ggagccgcgg ctcaccgatc tgcctcgcag
     2221 cttcgggatc ctcggcgccg cgctcggtgc cggcgatcag ggcgtcgccg cgtccgacga
     2281 cggcgtgctg ctggtcaacg tccacgagac ggccgtgctg ccggtcgttc ccgacggccg
     2341 tccggagctg gccatcgcga tcccaggtcc ggacggcccg tggggcctcc tgctgatcgc
     2401 cggcgaaacg actgggtcgc tcgggccgcc cgacctcgag gcggcacggg cgtgcgctgc
     2461 cagtctggga gcgctggtca gcatcacccg gcgcggcgcg gagatcgagc acctccgcca
     2521 tcgcgcggag gccctccgcc gggtcgccag cgacatcggc agccgtctgg acctcaaccg
     2581 gatcctgacc ggcctggtcg accacgccat ggtcctgttc gagggcgacg ccgcggcggt
     2641 cttcctccag cacaaggacg ggaccatcgc cgccgaggtg agccgcgggc tgtccaacga
     2701 attcctgagc agcctccgct cctttccgcc gcggtcgctg cccgcagcgg cgatcaaggc
     2761 caaccagccg ctcttctcgg tcggctaccg cgacgacccg cgcggcgcgg acgtccgcgc
     2821 ggccgtcgtc
//
LOCUS       DATDDI010000835         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_372007, whole genome shotgun sequence.
ACCESSION   DATDDI010000835 DATDDI010000000
VERSION     DATDDI010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372007"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1025
                     /locus_tag="VIU37_12155"
     CDS             <1..1025
                     /locus_tag="VIU37_12155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014758.1"
                     /translation="RLLLQRVAPPQLLAVRNAQFMTVSGQESAGRTPLALAGHRLRDF
                     NISLDGTLLATLSEDNRLEVWDALAVLADEPAQPTMMPALPGALLGFGMDWLPGREAL
                     LLNVSEHGLHRLYTLDVRTGVWTAFTPDHLAVVSYWPAPDSRHVAVVGQQHSEYGLWI
                     FDLESEAVRRILEPGNGVIPLVDVTWSPDTARLAVAGQPTGSNLVAVWVVGADGTGLQ
                     RITPYAEHAVAPMWSPDGAWIAYLRDTGSGQGCWVDLSIVRPDGSDRHLVLRNSLPVA
                     WAADSSGLILESDLALPGAALGAMVDVAVNGTVRRVILPLQDADVNSWLCHPNGMLSH
                     WYRGTP"
     gene            1138..>1732
                     /locus_tag="VIU37_12160"
     CDS             1138..>1732
                     /locus_tag="VIU37_12160"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6014759.1"
                     /translation="MTRIQETGDRVLANVERVIVGKHAEVRFALVALLCRGHLLIEDV
                     PGTGKTVLAKAIAKSLGCTFRRIQFTPDLLPSDVTGLSIYNQKTQEFEFRPGPIMSQV
                     VLADEINRATPKTQSALLECMEERQATIDGTTYPMPDPFLVIATQNPIEYEGTFALPE
                     AQLDRFMLRIRLGYPQPVEEVVILDEQKRHHPIEELAE"
BASE COUNT          259 a          619 c          588 g          266 t
ORIGIN      
        1 cccgactgct cctccagcgg gtggccccgc cgcagctcct tgccgttcgc aacgcccagt
       61 tcatgacggt ctccggccag gagagcgccg gtcggacgcc gctggcgctc gccggccatc
      121 gactccgcga cttcaacatc tcgctggacg ggacgctgct cgccaccctc tcggaggaca
      181 accgcctgga ggtctgggat gcccttgcgg tcctcgccga cgagccggca cagcccacga
      241 tgatgccggc gctgccgggc gcgttgctcg gcttcggcat ggactggctg cccggccggg
      301 aggccctcct cctgaacgtc agcgagcacg ggctgcaccg gctctacacg cttgacgttc
      361 ggaccggcgt gtggacggcc ttcacgcccg accacctcgc cgtcgtgagc tactggccgg
      421 cgccggattc tcggcatgtg gcggtcgtcg ggcagcagca cagcgagtac ggcctgtgga
      481 tcttcgatct cgagtcggag gccgtccggc gcatcctcga gccgggtaac ggggtgatcc
      541 ctctcgtcga cgtgacctgg tcgcctgata cggcgcgcct tgccgtcgcg ggacagccga
      601 cggggtcgaa cctcgttgcg gtctgggtcg tgggtgccga cgggaccggg ctgcagcgga
      661 tcacgccgta tgcggagcac gcagtggcgc cgatgtggtc gccagacggc gcatggatcg
      721 cctatctccg ggacactggc agcgggcaag ggtgctgggt cgatctgtcg atcgtgcgac
      781 cagacggttc cgacagacac ctcgtgctgc gcaactcgct accggtggcc tgggcggccg
      841 actcgagcgg gctcatcctc gagtcggacc tggcgctccc cggtgccgcg ctcggggcga
      901 tggtcgacgt ggcagtcaac ggcacggtcc gccgggtcat cctgcccctc caggacgcgg
      961 acgttaactc ctggctgtgc cacccgaacg gcatgctgag ccactggtac cggggcaccc
     1021 cgtgacgcgc cacgggcccg tcaccggggg aacctttcgg gcgtccccgg cgtaccatcc
     1081 cgtgacccca ccgagccacc tgcccggcgt gcctgccgga gcccccgagg gagcgtcatg
     1141 acgaggatcc aggagaccgg ggatcgcgtc ctcgcgaacg tcgagcgcgt catcgtcggc
     1201 aagcacgccg aagtgcggtt cgccctcgtg gccctgctgt gccgtggcca cctgctcatc
     1261 gaggacgtgc ccgggaccgg gaagacggtc ctggcgaagg cgatcgcgaa aagcctcggc
     1321 tgcacgttcc ggcggatcca gttcacgccg gacctgctgc cgtccgacgt caccggcctc
     1381 tcgatctaca accagaagac ccaggagttc gagttccggc cgggcccgat catgagccag
     1441 gtcgttctgg ccgacgagat caaccgggcg acgccgaaga cgcagtccgc cctcctcgag
     1501 tgcatggagg agcggcaggc gacgatcgac ggcaccacct acccgatgcc cgatccgttc
     1561 ctggtcatcg ccacgcagaa cccgatcgag tacgagggca cgttcgcgct gccggaggcg
     1621 cagctcgacc ggttcatgct ccgcatccgc ctcggctacc cgcagccggt ggaagaggtc
     1681 gtcatcctcg acgagcagaa gcgccaccac ccgatcgagg agctggccga gg
//
LOCUS       DATDDI010000836         2084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_18220, whole genome shotgun sequence.
ACCESSION   DATDDI010000836 DATDDI010000000
VERSION     DATDDI010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18220"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VIU37_12165"
     CDS             <1..586
                     /locus_tag="VIU37_12165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014760.1"
                     /translation="DAFVVRGTIQTRHRRITDMLNSAEHDFLVLADATFDEFGSTGQA
                     IQADHAQVNLGAVLFGVADEPVEATPELRVPKVSERALISVPPFMVTGHIHLMPERDL
                     HDALEDLMGRFVPVTEATYWSDRVGEARKTALVVAINHSRAQFLAPFREIDPWAGLDR
                     GAGASPAAGAGPAAAPDGASRPPDPAWPETDRPS"
     gene            complement(614..1456)
                     /locus_tag="VIU37_12170"
     CDS             complement(614..1456)
                     /locus_tag="VIU37_12170"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEY6014761.1"
                     /translation="MNGLARPEILATTEWLAEQLGRPGLRVLDVRWRPDGTAAAVHAV
                     GHIPGAVAVDWRAELTEDVPGGDAFVIVGPDRMAALAERAGISDGSTVVVYDDSQGVF
                     AARTWWSLRAYGLESVRILDGGFPAWVAEGRPVSNAEVVPASGRFTVRGPNRTRLTTS
                     DVRGLLGAPDVTLLDARAPSEYRGFEGNTKRLGHIPGALNVPVGATSLPGSQHLRDGA
                     RLRTLLHAGNVSRGRRMVCYDGSGVAASKLAFVLTLLGHDDVAVYDGGWAEWGNRLDL
                     PVDR"
     gene            1475..>2084
                     /locus_tag="VIU37_12175"
     CDS             1475..>2084
                     /locus_tag="VIU37_12175"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY6014762.1"
                     /translation="MVAPFPPGPEKLEAVRSALPALAAGIYLNTGSVGPLPAETAAAM
                     AEVATWERDVGRAHPDDFDELLARMAEARAGVAAVLGSDVGAVALTHSTTESMNAGTL
                     AAVGAGVGGRVVTSRHEHLGGLGPLFSMRDRGAAEVEIVAAGDDGDDARTLAAFEAAI
                     TPETRLVSVSHVAWTTGAVLPIAGIADIAHARGARLIVDGAQA"
BASE COUNT          279 a          760 c          775 g          270 t
ORIGIN      
        1 ggacgccttc gtcgtgcgtg gcacgatcca gacgcgtcac cggcggatca cggacatgct
       61 caactcggcg gagcacgact tcctggtcct cgccgatgcg acgttcgatg agttcggctc
      121 gaccggccag gcgatccagg ccgaccacgc gcaggtcaac ctgggcgccg tcctgttcgg
      181 cgtcgccgac gagcccgtcg aggcgacgcc ggagctgcgt gtcccgaagg tgtccgagcg
      241 ggcgctgatc tccgtcccgc ccttcatggt gaccggccac atccacctga tgccggaacg
      301 cgatctgcac gacgcgctcg aggacctgat ggggcggttc gtcccggtga ccgaggcgac
      361 ctactggtcc gatcgcgtcg gcgaagcgcg caagaccgcc ctcgtcgtcg cgatcaacca
      421 cagccgggcc cagttcctgg cgccgttccg cgagatcgat ccgtgggccg gcctcgatcg
      481 gggtgccggc gcgagccccg cggccggcgc cggtccggcc gccgcaccgg acggcgcgtc
      541 gcggccgccc gatcccgcct ggccggagac cgaccgcccc agctgaggcc cgaatctcga
      601 gccccgggcg gcctcagcga tcgacgggca ggtcgagccg gttgccccac tcggcccagc
      661 cgccgtcgta gaccgccacg tcatcgtggc cgagcagcgt caggacgaag gccagcttcg
      721 acgccgccac ccccgatccg tcgtagcaga ccatccgcct cccgcggctt acgttcccgg
      781 cgtggaggag cgtccgcagc ctggcgccgt cgcggaggtg ctggctgccg ggcaggctcg
      841 tcgccccgac cggcacgttg agcgcgccgg ggatgtggcc cagccgcttg gtgttgccct
      901 cgaagccgcg gtactcggag ggagcgcggg cgtcgagcag ggtcacgtcg ggggcaccga
      961 ggaggccgcg gacgtccgac gtggtcagcc gcgtccggtt cggcccgcgg accgtgaacc
     1021 ggccggatgc cggcacgacc tcggcgttcg agaccgggcg gccttcggcg acccaggccg
     1081 ggaagccgcc gtcgaggatc cgcacggatt cgaggccata ggcgcgcagg ctccaccagg
     1141 tgcgtgcggc gaagacaccc tggctgtcgt cgtagaccac gacggtcgag ccgtcggaga
     1201 tgcccgcgcg ctctgcgaga gcggccatcc ggtcgggacc gacgatcacg aacgcgtccc
     1261 cacccgggac gtcctcggtc agctcggcgc gccagtcgac cgcgacggcg cccgggatgt
     1321 ggcccacggc gtggacggcc gcggcggtgc cgtctggacg ccagcgaacg tcgaggacgc
     1381 ggaggcccgg ccgtccgagc tgctcggcca gccactcggt ggtcgccagg atctcggggc
     1441 gggccaggcc attcatgccc ggtatcatac ggccgtggtc gcccccttcc cgccaggccc
     1501 ggagaagctc gaggcggtgc gatccgcgct tccggcgctc gccgccggca tctacctgaa
     1561 caccggatcg gtcggaccgc tgccggcgga aacggccgcc gcgatggccg aggtcgcgac
     1621 ctgggagcga gacgtggggc gggcgcaccc ggacgacttc gatgagctgc tggcgcggat
     1681 ggccgaggct cgggccggcg tggcggcggt cctcggaagc gacgtcgggg cggtcgcgct
     1741 gacgcattcg accaccgaat cgatgaacgc cgggacgctg gccgcggtcg gcgcgggcgt
     1801 cggtggacga gtggtcacga gccggcacga gcacctcggg ggcctcggcc cgctcttctc
     1861 gatgcgcgat cgaggtgcgg cggaggtcga gatcgtggcc gccggcgacg atggcgacga
     1921 tgcccgcacg ctggccgcgt tcgaggccgc gatcaccccg gagacacggc tcgtctccgt
     1981 ctcgcacgtg gcctggacga ctggcgccgt cctgccgatc gcggggatcg ccgacatcgc
     2041 ccatgcccgc ggggcgcggc tgatcgtgga cggcgcccag gccg
//
LOCUS       DATDDI010000837         2840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_663259, whole genome shotgun sequence.
ACCESSION   DATDDI010000837 DATDDI010000000
VERSION     DATDDI010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_663259"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VIU37_12180"
     CDS             <1..636
                     /locus_tag="VIU37_12180"
                     /inference="COORDINATES: protein motif:HMM:NF012788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014763.1"
                     /translation="RQNQPDDINHGLLTYPVLQAADIAIYKAGRVPVGKDQAAHLELS
                     REIVRTFNARYGETFPEPQAVYTEAPTVLGTDGVRKMSKSVGNTIDVLGDPALIRKQV
                     MSMVTDTKRILRTDPGRPEVCNVCQLHRFFGPDWEAIQDGERTARTGCVDTKKLLADR
                     IVEHYAFARERYIELLAHPDEVDGVLEAGADRLRPSAEATMDEVRHKMGLR"
     gene            642..1850
                     /locus_tag="VIU37_12185"
     CDS             642..1850
                     /locus_tag="VIU37_12185"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY6014764.1"
                     /translation="MLNVRPEGRDRRLVGALLVLGVTALFFVVVGQIASVFFYFGDIF
                     LTFFLAWLLAFIISPVVTRVVDAVPRLPRAVAAVLVYTLVVLVMALTVVVAAGALATS
                     IAQFVESIPDIRANLPTIVAPWQQWLTSVGLGQIDLAAESAAVLSNLDQIAGQLVEPL
                     QQFAVASLGAVGTMLIVFFLSIYMVVDRDQIVAFLFRLVPPAYAEDARLLQTSVSRSF
                     GGFLRGQALMGVVYFLIALATDLLLGLPLAALSAVGAGILQAIPFFGPFVSWAPPVIV
                     ALVLKPDAMLPALALMMVGWIVVMNVLQPRIMQDAVGIHPIVVLGSVLIGSRIAGIPG
                     AIFGIPIAAVVSAFFFQFLHRTTGDRTVAGRAARRLADREGRQVHVPREPAPGSAMDI
                     DDPQPATKPT"
     gene            1847..2818
                     /gene="surE"
                     /locus_tag="VIU37_12190"
     CDS             1847..2818
                     /gene="surE"
                     /locus_tag="VIU37_12190"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: protein motif:HMM:NF001490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEY6014765.1"
                     /translation="MTDTPDLTRERARTERRDVDKERGEPLAGGAARGGPRSLRANAR
                     PLAEWSSRPRILVTNDDGVESRGLLALKQALDPIGDVTVVAPDTNQSAVGHQKTLMRP
                     LRIRERTLADGSLAYPVDGSPTDAVSLAFLGYFGHEFDLVASGINYGANLGDDITYSG
                     TVSAAMEAVINNCPAFAISQEYYEHPDFALAARAAATVARNIMEHGLSPGELINVNVP
                     AMPLEDFGGVEVTRLGKRVYQDELIQRTDPRGIPYYWIGGPPPSGLAVPGTDFHAMVN
                     RRIAVTPIHLDLTGRRLLKRLRTWDWTLPEPAEDPAADETRPGGSAG"
BASE COUNT          406 a         1043 c          955 g          436 t
ORIGIN      
        1 cgccagaacc agcccgacga catcaatcac ggactgctga cctacccggt cctccaggcc
       61 gccgacatcg cgatctacaa ggcgggacgc gtgccggtgg gcaaggacca ggcggcgcac
      121 ctcgagctga gccgcgagat cgtccgcacg ttcaacgccc ggtacggcga gaccttcccg
      181 gagccccagg cggtctacac cgaggcgccc accgtgctcg ggaccgacgg cgtccggaag
      241 atgagcaagt cggtcggcaa cacgatcgac gtgctcggcg acccggcgct catccgcaag
      301 caggtcatgt ccatggtgac cgacacgaag cggatcctgc ggaccgatcc gggtcgcccc
      361 gaggtctgca acgtctgcca gctgcaccgg ttcttcgggc cggactggga ggcgatccag
      421 gacggcgagc ggaccgcccg cacgggctgc gtcgacacca agaagctgct cgccgaccgg
      481 atcgtcgagc actacgcgtt cgcgcgcgag cgctacattg agttgctggc gcatcccgac
      541 gaggtcgacg gggtgctgga ggccggtgcc gaccggcttc gaccgagcgc cgaggcgacg
      601 atggacgagg ttcgccacaa gatgggcctg cgctgacggc catgttgaac gtccgccccg
      661 agggacgcga ccgccgcctc gtcggcgcac tcctcgtgct gggcgtgacg gcgctgttct
      721 tcgtcgtcgt cgggcagatc gcgtcggtct tcttctactt cggcgacatc ttcctgacgt
      781 tcttcctggc ctggctgctg gcgttcatca tcagcccggt cgtgacccgg gtcgtggacg
      841 cggtgccgcg gctgcccagg gccgtggccg ccgtgctcgt ctacacgctg gtcgtgctcg
      901 tcatggccct cacggtggtc gtcgccgccg gcgcgctggc cacctcgatc gcccagttcg
      961 tcgagtccat cccggacatc cgggccaacc tgccgacgat cgtggcgccg tggcagcaat
     1021 ggctcacctc ggtcggactc ggccagatcg acctcgccgc cgagtcggcc gcggtcctat
     1081 cgaacctcga ccagatcgcc gggcagctcg tcgagccgct ccagcagttc gcggtcgcca
     1141 gtctcggcgc ggtcgggacg atgctgatcg tcttcttcct gtcgatctac atggtcgtcg
     1201 accgcgacca gatcgtggcc ttcctgttcc ggctcgtccc gccggcttat gcggaggacg
     1261 cgcggctgct ccagacgtcg gtgtcccgat cctttggcgg gttccttcgg ggccaggcgc
     1321 tgatgggcgt cgtctacttc ctgatcgcgc tcgcgacgga cctcctcctg ggcctgccgc
     1381 tcgccgcgct ctcggcggtc ggcgccggaa tcctccaggc gatcccgttc ttcgggccat
     1441 tcgtgtcgtg ggcgcccccg gtgatcgtgg ccctggtcct caagccggac gcgatgttgc
     1501 cggcactcgc gctgatgatg gtcggctgga tcgtggtgat gaacgtcctc cagccacgga
     1561 tcatgcagga cgccgtcggc atccacccga tcgtggtcct cggctcggtg ctcatcgggt
     1621 cgcggatcgc cggcatcccg ggcgccatct tcgggatccc gatcgccgcc gtcgtgtcgg
     1681 cgttcttctt ccaattcctc catcgcacga ccggcgaccg gaccgtggcc gggcgggcgg
     1741 cccgccgcct cgccgatcgt gagggccggc aggtccacgt gccgcgcgaa ccggcccccg
     1801 gcagcgcaat ggacatcgac gacccgcagc ccgccaccaa accgacatga ccgacacgcc
     1861 cgatctcacc cgggagcggg cgcgcaccga gcgccgcgac gtcgacaagg agcgcggcga
     1921 gccgctcgcc ggcggcgccg cgcgtggcgg cccgcgatcg ctgcgggcga acgcccgtcc
     1981 gctggccgag tggtcgagcc ggccgcggat cctggtgacc aacgacgacg gcgtcgaatc
     2041 gcgagggctg ctcgcgctca agcaggcgct cgacccgatc ggcgacgtca ccgtggtcgc
     2101 cccggacacc aaccagagcg cggtcggcca ccagaagacg ctgatgcgcc cgctccgcat
     2161 ccgggagcgg accctggccg acgggtccct cgcctacccc gtggacggat cgccgaccga
     2221 cgcggtcagc ctcgccttcc tgggctactt cggccacgag ttcgacctgg tcgcgtcggg
     2281 gatcaactac ggcgcgaacc tcggcgacga catcacctac tcgggcacgg tcagcgccgc
     2341 gatggaggcg gtgatcaaca actgcccggc cttcgcgatc tcgcaggagt actacgagca
     2401 tcccgacttc gcgctggccg cccgcgccgc cgcgacggtc gcgcgcaaca tcatggagca
     2461 cggcctgtcg ccgggcgagc tgatcaacgt gaacgttccg gcgatgccgc tcgaggactt
     2521 cggtggcgtc gaggtcaccc ggctcggcaa acgggtctac caggacgagc tgatccagcg
     2581 aaccgacccg cgcgggatcc cgtactactg gatcggcggg ccgccgccat ccgggctggc
     2641 ggtgccggga acggatttcc atgccatggt caaccggcgg atcgccgtca cgccgatcca
     2701 cctcgacctg accggccggc ggctgctcaa gcggctcagg acctgggact ggacgctccc
     2761 cgaaccggcc gaggaccctg cggcggacga aacgcgcccc ggcggctcgg ccggctaggc
     2821 ccgcgtcgcg ccgccgagac
//
LOCUS       DATDDI010000838         1985 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_101366, whole genome shotgun sequence.
ACCESSION   DATDDI010000838 DATDDI010000000
VERSION     DATDDI010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101366"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            362..793
                     /locus_tag="VIU37_12195"
     CDS             362..793
                     /locus_tag="VIU37_12195"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY6014766.1"
                     /translation="MTDPLADLLERLFVAGVAITTRALTEALPQLDLTFPQWRVLLIV
                     GEAPDGATVSEVASRVGVTVPATSRQLRRLARRGLLAIRRDEHDRRAVRARLTDDGLA
                     ARDRILAYRRARIAETVAGVHRSEATLAALDKVAGAFDVFR"
     gene            790..>1985
                     /locus_tag="VIU37_12200"
     CDS             790..>1985
                     /locus_tag="VIU37_12200"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEY6014767.1"
                     /translation="MTISATGLLDRIRRRTRSAAYLRKWVVLGALIGVIAGLGAAAFF
                     WALEQASALLLGGLAGFHPATPVGEGGASITDATRPWAIPFVVALGGLISGIIVFRLA
                     PEAEGHGTDAAIAAFHHGARRVRARIPLIKLVASAITIGSGGSGGREGPTAQIGAGFG
                     SYLARLLDLDARDARIAVAAGMAAGIGAIFRAPLGGAVLGAEIPYREDVESDALVPSF
                     VASVVAFSVFGAFVGFAPIFGRVAGAGFQDPRQLLYYALIGVAAGIVGRLYITTFYGF
                     ADRFRSVRLPREVRPAIAGFVVGCIGLAVPGVLGTGYGWVQAGLDRQSLLAIPLWMVL
                     ALPFAKILSTSLSIGSGGSGGIFGPGMVIGGLLGAGIWRLLEPIAPAIPLEPAPFVIV
                     AMMALFG"
BASE COUNT          233 a          682 c          722 g          348 t
ORIGIN      
        1 tcgatcgcgt cgagggtcag cggctgctgc acgaacacga tcaccggaca tcccgaggag
       61 tcgccgaatg ggccgatgac gacggtgcgc tctggctggc gcaccgcctc ggcggcgagc
      121 cgtgccgatg attcgttcgg cagctggagg gtgtgggcaa catcgcggag tcggctcatg
      181 tcaacgccgg acgctcgcag gcgatccagg gccgatcgat ccccggctat tccggccgcg
      241 tcggcaggac cacctcgatg gggatccgcc ggcatcggca agctcgcatc cctccggtcc
      301 agtcatgctt gggcaaccca gatgatagcc acctggcaag tattcgtcta tgctctcagc
      361 catgaccgat ccgctcgccg acttgctgga acgactgttc gtcgctggtg tcgcgatcac
      421 gacccgggcg ctgaccgagg ccctgcccca gctggacctg accttcccgc aatggcgggt
      481 gctgctgatc gttggcgagg caccagacgg cgcgacggtg agcgaggtcg cctcgcgggt
      541 cggcgtgacg gtcccggcca ccagtcgtca gctgcggcga ctcgcccgtc gtggcctgct
      601 cgccatccgg cgggatgagc acgaccgacg ggcggttcga gcccgcctca cggacgacgg
      661 tctcgcggcc cgcgaccgga tcctggcgta ccgccgggcc cggatcgccg agacggtcgc
      721 cggggtgcat cggtccgagg caacattggc cgcgctcgac aaggtcgctg gcgccttcga
      781 cgtcttccgg tgaccatctc ggctaccggc ctcctcgacc ggatccggcg ccggacccgg
      841 agcgcggcct acctgcgcaa gtgggtcgtg cttggtgcgc tgatcggcgt catcgccggg
      901 ctcggcgcgg ccgcgttctt ctgggcgctc gagcaggcat cggcgctgct gctcggcgga
      961 ctggccggct tccatccggc aacgccggtc ggggagggcg gagcctcgat caccgacgcg
     1021 acccgcccgt gggcgatccc gttcgtggtc gcgctcggtg gcttgatctc ggggatcatc
     1081 gtgttccggc tggctccaga agcggaaggc cacggcactg acgccgcgat cgccgccttc
     1141 catcacgggg cccggcgcgt ccgtgcacgg atcccgctga tcaagctggt cgcgtcggcg
     1201 atcacgatcg gctcgggagg atccggcggt cgagaggggc ccacggctca gatcggcgcc
     1261 gggttcggat cgtacctggc ccgcctgctg gatctcgacg cgcgcgacgc ccggatcgcc
     1321 gtggcggccg ggatggcagc gggcatcggg gccatcttcc gggcgccgct cggcggcgcc
     1381 gtgctcggtg ccgagatccc gtaccgtgag gacgtcgagt cggatgccct cgtgccgtcg
     1441 ttcgtcgcgt cggtggtcgc cttctcggtg ttcggcgcct tcgtgggttt cgcgccgatc
     1501 ttcgggcggg tggcgggcgc tgggttccag gacccgcgcc agctgctgta ctacgcgctg
     1561 atcggggtgg ccgcggggat cgtcgggcgg ttgtacatca ccaccttcta cgggttcgcc
     1621 gatcggttcc gctccgtccg cctgccgcgc gaagtgcggc ccgcgattgc gggcttcgtc
     1681 gtcgggtgca tcgggctggc ggtgccaggt gtccttggga ccggctacgg ctgggtccag
     1741 gccgggctcg accggcagag cctgctggcc atcccgctgt ggatggtgct ggcgctgccg
     1801 ttcgccaaga tcctgtcgac ttcgctgtcg atcgggtccg gcggctcagg cggcatcttc
     1861 gggccgggga tggtcatcgg tgggctgctg ggcgccggga tctggcggct gctcgaaccg
     1921 atcgccccgg ccatcccgct cgagcccgct ccgttcgtga tcgtcgccat gatggccctg
     1981 ttcgg
//
LOCUS       DATDDI010000839         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_38868, whole genome shotgun sequence.
ACCESSION   DATDDI010000839 DATDDI010000000
VERSION     DATDDI010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38868"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1547
                     /locus_tag="VIU37_12205"
     CDS             <1..>1547
                     /locus_tag="VIU37_12205"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014768.1"
                     /translation="GRLATGDAEAGLAEAPAGAEVEVATTWVEHAYIEPEAGFARRVD
                     DRIEVVVSTQAPYMDRDEVARILGIAPADVRIIPTACGGGFGGKLDLGVHALIAIAAW
                     RTGRAVRAVWTRPESMAASPKRHPARIMATAGADADGRLTGYRFHGDFDTGAYASWGP
                     TVANRVPVHAMGPYAVPNVLATTRAIHTNNPPAGAFRGFGVPQAAIAHEALMDTLAVE
                     LGIDALELRQRNALRAGARTATGQLLHASAGLPACLDALRPRWTALRAEVEAFNAVAA
                     REGRPVRRGVGIGAMWYGIGNTSMTNPSTMELGLDRDGDVTLYSGAVDIGQGASTVMV
                     QIAADGLGVAPETIRLVSGDTDRTADAGKSSASRQTFVSGNAARLAGEDLRRQLLRLA
                     EVDEAAAPSAVVELGAGRARVTEPGRPPVVIDLAELPVVRATDPDAAPVLLGRGFYDP
                     KTTPLDADGQGDPYETYAFGAQLALVEVDVELGTVRVLRVVAAHDVGRAINPTQVEGQ
                     IHGGIAQG"
BASE COUNT          202 a          579 c          568 g          198 t
ORIGIN      
        1 ggccggctcg cgaccggcga cgcggaggcc gggctggccg aggctccggc gggcgccgaa
       61 gtcgaggtcg cgacgacgtg ggtcgagcac gcgtacatcg agcccgaggc cggctttgcg
      121 cgccgggtcg acgaccgcat cgaggtcgtg gtcagcaccc aggcgccgta catggaccgc
      181 gacgaggtgg cgcggatcct cgggatcgcc ccggccgacg ttcggatcat cccgaccgcg
      241 tgcggcggcg ggttcggcgg caagctggac ctcggcgtcc acgcgctgat cgcgatcgcc
      301 gcgtggcgga cgggccgggc cgtccgggcc gtctggaccc ggcccgagtc gatggccgcg
      361 agcccgaagc gccaccccgc ccggatcatg gcgaccgccg gcgcggatgc cgatgggcgg
      421 ctcacgggct atcgcttcca cggcgacttc gacaccggcg cctacgcttc gtgggggccc
      481 acggtcgcca accgggttcc ggtccacgcg atgggcccgt acgccgtccc gaacgtcctg
      541 gccacgaccc gggcgatcca caccaacaac ccgccggccg gcgcctttcg cggctttggg
      601 gtgccccagg cggcgatcgc ccacgaggcc ctgatggaca ccctcgccgt cgagctgggg
      661 atcgacgcgc tcgagctccg ccagcggaac gcccttcggg ccggtgcccg gacggccacc
      721 ggccagctcc tgcacgcgag cgccggcctg ccagcctgcc tcgacgcgct ccggcctcgc
      781 tggaccgcgc tgcgcgccga ggtcgaggcg ttcaacgccg tggctgctcg cgaaggacgc
      841 ccggtccgcc gcggcgtcgg gatcggggcg atgtggtatg ggatcggcaa cacgtcgatg
      901 acgaatccgt cgacgatgga gctcggtctc gaccgggacg gagacgtgac cctctactcc
      961 ggcgccgtcg acatcggtca gggcgcctcg acggtcatgg tccagatcgc cgccgacggg
     1021 ctgggcgtcg cccccgagac catccgcctc gtcagcggcg acacggatcg caccgccgac
     1081 gccggcaagt cctcggcgag ccgccagacg ttcgtctcgg gcaacgctgc ccggctggcc
     1141 ggggaggacc tgcgtcggca gctcctgcgc ctggccgagg tcgacgaggc cgcggctccg
     1201 tcggcagtcg ttgagctcgg tgcgggccgg gccagggtca cggaacccgg tcgcccgccg
     1261 gtcgtcatcg acctggccga gctgccggtg gtgcgtgcca ccgatccgga cgcggcgccc
     1321 gtcctcctgg gtcgcggctt ctacgatccg aagacgacgc ccctcgacgc ggacggccag
     1381 ggcgacccct acgagaccta tgccttcggc gcccagctcg cgctggtaga ggtcgacgtc
     1441 gagctcggga cggtccgggt cctgcgggtg gtcgccgccc acgacgtcgg acgcgcgatc
     1501 aacccgaccc aggtcgaagg tcagatccac ggcggcatcg cccaggg
//
LOCUS       DATDDI010000840         3449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_454652, whole genome shotgun sequence.
ACCESSION   DATDDI010000840 DATDDI010000000
VERSION     DATDDI010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454652"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VIU37_12210"
     CDS             complement(<1..796)
                     /locus_tag="VIU37_12210"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY6014769.1"
                     /translation="MADRVLDRTRLTSLMAREESRFSADHPRSAALFDQARTSLLDGV
                     PMPWMVKWASPFPPFVESAAGAHFRCVDGHDYVDFCLGDTGAMAGHGPAPTVAAVERQ
                     LRLGITHMLPTEDAAWVGAELTRRFGVGAWQFALSASDANRWSLRLARHVTGRPKVVV
                     HDHCYHGSVDEAIAMLDDAGRVVPVRGSVGPQVDVAETTRVVDFNDAAALEAALADRE
                     VAAVLIEPALTNVGIVLPEPGYLDAVRDITRRTGTILIIDETHTICA"
     gene            complement(944..1084)
                     /locus_tag="VIU37_12215"
     CDS             complement(944..1084)
                     /locus_tag="VIU37_12215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014770.1"
                     /translation="MRRLRRRANAASRLYCSTNGCTSFLEIDADSGVARCPICGLVRR
                     LH"
     gene            1552..2724
                     /locus_tag="VIU37_12220"
     CDS             1552..2724
                     /locus_tag="VIU37_12220"
                     /inference="COORDINATES: protein motif:HMM:NF022100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NEW3 domain-containing protein"
                     /protein_id="HEY6014771.1"
                     /translation="MTLAWRSGGRAARISLIGVILGIATIGVAPATLAADSIQLTTPY
                     PAVAVAPGAKVSFDVSVKTPSAQRVDLSIDKVPSGWTAVMRGGGFVVDGVQTNGTDAA
                     VVTLEVTVPADAAPGSQRLTVTASGGGASTALNLDIRVTPSAAGDVTLTTQFPELKGV
                     STTNFSFSLSLTNDTSDDLPFGVVATGPDGWTVTAAVASQAQAASAVVKAGQTSAITV
                     TAKAPQDATAGTYPISVDATSGDKTAHADLSIQVTGSYSLSMTTTDGRLNAGASAGGA
                     TDLGLVITNSGTADVDSLELSAAPPSGWTVTFEPTTITVPAGKAVNATAHIKPSSDAI
                     AGDYVVTMRATSTAASATADIRVTIETSLLWGAVGLALIVVVLLGLWWTFRRFGRR"
     gene            2721..>3449
                     /locus_tag="VIU37_12225"
     CDS             2721..>3449
                     /locus_tag="VIU37_12225"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014772.1"
                     /translation="MRRAKPAVRRAAADDDAVIRTRRLTKRYGTLTAVDHLDLVVHRG
                     EIFGLLGQNGAGKTTTILMLLGLTEPSSGEARVMGLDPEREPRLVKRRVGYLPDAVGF
                     YGGLSGRQNLRYTANLNGLRRDVAEHAIADVLEQVGLTDRADDRVDTYSRGMRQRLGI
                     ADALVKTPDLLILDEPTTAIDPLGVVEILELLRRLVNERGLAIMLSSHLLTQVQSVCD
                     RIGIFAAGRLVGQGTVDELAATFGD"
BASE COUNT          514 a         1229 c         1228 g          478 t
ORIGIN      
        1 cggcgcagat cgtatgggtc tcgtcgatga tcaggatcgt gccggtccgc cgcgtgatgt
       61 cgcggacggc gtcgaggtaa ccgggctccg gcaggacgat cccgacattg gtcagcgcgg
      121 gctcgatgag gacggccgca acctcccggt cggcgagtgc cgcctcgagg gcggcggcat
      181 cgttgaagtc gaccacccgc gtggtctcgg ccacgtcgac ctgcggcccg accgagcccc
      241 ggaccggcac gacgcgcccc gcgtcgtcga gcatcgcgat cgcctcgtcg accgagccgt
      301 ggtagcagtg gtcatggacg accaccttcg ggcggccggt cacgtgccgg gcgagccgaa
      361 gtgaccatcg attggcgtcc gacgctgaca gcgcgaactg ccacgccccg acgccgaacc
      421 ggcgagtgag ctcggcgccc acccacgccg catcctcggt cgggagcatg tgggtgatgc
      481 cgagccggag ctgccgctcg acggccgcca cggttggcgc cgggccgtgg cctgccatcg
      541 cgccggtgtc gcccaggcag aagtcgacgt agtcgtggcc gtcgacgcag cggaagtggg
      601 cgccggccgc ggactcgacg aacggtggga acgggctcgc ccacttgacc atccagggca
      661 tcgggacgcc gtcgagcagc gaggtgcgag cctggtcgaa gagcgccgcg gatcgcgggt
      721 gatcggcgct gaaccgcgat tcctcgcggg ccatgaggct ggtgagccgg gttcgatcga
      781 ggacgcgatc ggccatgcgg tgacgcctca gctggggcgg acgggttcca accgaccaag
      841 catggccggg tccgtgcctc cgtgcgcggc gattgcgcgc ggcgcgaccg cgttcggggt
      901 cgccgccggc cgggccgtca ggccgtgcag ccggagggcg agatcagtga agacggcgga
      961 cgaggccgca gatcgggcag cgagccacgc cggaatcggc gtcgatctcg aggaagctgg
     1021 tgcagccgtt ggtgctgcag tagaggcgcg acgcggcgtt ggcgcgacgg cgcaaccggc
     1081 gcatggcggt ggaccgcccg gcgacggacg atgtggtgga acgggacatc atggtgcggt
     1141 gacttgtgct ttctggcgcg cctggatcgc gtgatgggcg atcggctgcg cggccttggt
     1201 atgggtctgc gcgcgggacg ggagcgagtg ttgggcgctc taaccggatc gtcgctgcag
     1261 acgagttacc aacggagtat ggccctgggt cacgaacccg tcaaccgtac catcggcgga
     1321 tcccgggact tgcactgcgc ccggcgcctc cacgcggtac cctcccgaac gaccggacga
     1381 ttcaggtctc ttcatcaaag cttggttgat tccagtcccg gggcgcggtc agactcgcgc
     1441 cgaccgggct gtcgaggacg tccggtcgag ccggtgcgcg caccggtctc cgtcgcggct
     1501 gtgcacggga gggcccggcc gcgcttgcca tgggatccga ggaggtaaca ggtgacactg
     1561 gcatggcgta gcggtgggcg agccgcgcgg atcagcctga tcggggtgat cctcgggatc
     1621 gcgacgatcg gcgtggcccc ggccacgctg gccgcggact cgatccagct cacgaccccg
     1681 tacccggccg tggcggtcgc ccccggcgcc aaggtgtcct tcgacgtgtc ggtgaagacg
     1741 cccagcgccc agcgggtcga tctctcgatc gacaaggtcc cgagcggctg gacggcggtc
     1801 atgcgcggcg gcgggttcgt cgtcgacggc gtccagacca acgggacgga cgccgcggtc
     1861 gtgaccctcg aggtcaccgt accggccgat gccgccccgg gatcgcagcg cctcaccgtc
     1921 acggcctcgg gcggcggcgc ctcgaccgcg ctcaacctgg acatccgggt caccccgagc
     1981 gcggccggcg acgtgacgct gacgacccag ttcccggagc tgaagggcgt ctcaaccacc
     2041 aacttctcgt tctcgctcag cctgaccaac gacacgtccg acgacctccc gttcggcgtc
     2101 gtcgcgaccg gcccggacgg ctggacggtg accgccgccg tcgcctcgca ggcgcaggcc
     2161 gccagtgccg tcgtcaaggc cggccagacc tccgcgatca cggtgaccgc caaggccccg
     2221 caggacgcga ccgccggcac gtatccgatc tcggtcgacg cgacgagcgg cgacaagacc
     2281 gcccacgcgg acctgtcgat ccaggtcacc ggcagctaca gcctcagcat gaccaccacc
     2341 gacggacggc tcaacgccgg tgcctccgcg ggcggcgcga ccgacctcgg cctggtcatc
     2401 accaactcgg gcaccgccga cgtcgacagc ctcgagctgt ccgccgcgcc cccgagcggc
     2461 tggaccgtca ccttcgagcc gaccacgatc accgtccccg ccgggaaggc ggtcaacgcc
     2521 accgcgcaca tcaagccctc gtcggatgcc atcgccggcg actacgtggt gacgatgcgg
     2581 gcgacctcca cggccgccag cgccacggcg gacatccggg tcacgatcga gacctcgctc
     2641 ctgtgggggg cggtcggcct ggccctgatc gtcgtcgtcc tgctcgggct gtggtggacg
     2701 ttccgccgct tcggccggcg atgaggcgcg ccaagcccgc cgtcaggcgc gccgcggccg
     2761 acgacgacgc ggtcatccgg acccgcaggc tgaccaagcg ctacggcacc ctgaccgcgg
     2821 tcgaccatct cgacctcgtc gtccatcgcg gcgagatctt cgggctcctc ggccagaacg
     2881 gtgcgggcaa gacgacgacc atcctgatgc tgctgggcct gaccgagccg tcgagcggcg
     2941 aagccagggt catgggcctc gacccggagc gcgagccccg cctcgtcaag cgccgggtcg
     3001 gctatctgcc ggatgcggtg ggcttctacg gcggcctcag cgggcgccag aacctgcgct
     3061 atacggccaa cctcaacgga ctccgccgcg acgtcgccga gcatgcgatc gccgacgtcc
     3121 tcgaacaggt cggcctgacc gatcgagccg acgaccgggt cgacacctac tcgcggggca
     3181 tgcgccagcg gctcggtatc gcggacgcgc tggtcaagac ccccgacctg ctgatcctag
     3241 acgagcccac gacggcgatc gacccgctcg gcgtggtcga gatcctcgag ctgctccgcc
     3301 ggctggtcaa cgagcgcggc ctggcgatca tgctgtcgag ccatctcctc acccaggtcc
     3361 agtccgtctg tgaccggatc ggcatcttcg ccgccgggcg tctggtcgga caggggaccg
     3421 tcgacgagct ggcggcgacc ttcggcgac
//
LOCUS       DATDDI010000841         3906 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_330329, whole genome shotgun sequence.
ACCESSION   DATDDI010000841 DATDDI010000000
VERSION     DATDDI010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330329"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..569
                     /locus_tag="VIU37_12230"
     CDS             <1..569
                     /locus_tag="VIU37_12230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014773.1"
                     /translation="TRLAEMASEGRVQEQKLASDRENLRCQEELELALVARQRRMQAE
                     TVATERQKLQLEQERFQAEMEAEENRVTTEAPVRQLRIAKETDLLRQELEMRELQAQV
                     KALEVDQELLLPRAQQQLRLELLPVEQAPQIVESASKVLRGTNLAVYGENAQLLGQLA
                     PVFDVLTQAVQQATQRTVPRAPEYAEPA"
     gene            complement(694..1860)
                     /locus_tag="VIU37_12235"
     CDS             complement(694..1860)
                     /locus_tag="VIU37_12235"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014774.1"
                     /translation="MSARRVLALLRRLVQELHRDRRSMALLFVAPIVLTGLMAYVLRG
                     QLVTPVSAVVVNEAGQPGAAIVGALEGAMRTDGGSVIEAPDRAAADAALRDGTASIAI
                     VLPADFVARLATGNEPSLTVITPGLEPTADSQQLISLQRAIATAVTQALPAAGLHLPR
                     LDAQTLYGTPDSDVVDHLAPVFLGFFAYFFVYILTGISFLRERVGGTLERLLATPVSR
                     GEIVLGYSLGFGLFATIQVLVLLGWTLLDVQVPAIGPLAAFSVGLAVPVAGSAGLAFL
                     VVMLLALGAVSLGILLSTFARTELQVVQFIPLVIVPQALLSGVLFPVSSMPDILQAIA
                     RVLPLTYATDGLRQVVIRGADLGYGPLQLDLLVLAAFVAVFAVLASATIRREVV"
     gene            complement(1857..2597)
                     /gene="ccmA"
                     /locus_tag="VIU37_12240"
     CDS             complement(1857..2597)
                     /gene="ccmA"
                     /locus_tag="VIU37_12240"
                     /EC_number="7.6.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015439 - ABC-type heme transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC exporter ATP-binding protein CcmA"
                     /protein_id="HEY6014775.1"
                     /translation="MQTVAMGLVPAVQAIDLRKSFGELHAVDGVSFQLAAGRIYGVLG
                     PNGSGKTTLIRMLTGLGRPTAGEARVLGVQMPSRTNLARIGYMTQSDGIYPELTAAEN
                     ARFFAAMYGIRDPDAAVAALAVVELSDRSGALASQLSGGLRRRLSLACALVHRPPVLF
                     LDEPTVGVDPALRAQFWAYFHELARGGTTIVVSSHVMDEADRCDELLFMRAGRVIAQG
                     SGGELRARAGTSDLEQAFLQFSAEGPGA"
     gene            2741..3475
                     /locus_tag="VIU37_12245"
     CDS             2741..3475
                     /locus_tag="VIU37_12245"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEY6014776.1"
                     /translation="MSQSLRTMGAFALGGLIVAVAALAVRPGPVAGAPTTGTEPALHT
                     LTVTGNGKVTVVPDVARVYLGVTLTKPTVKEARDAAAKAMTNVIAAIKGLGIADADIQ
                     TTGLSLSARYAENSSTKIVGYVISEQVQVTVRDLDKAGDVVDAATAKGATDVNGISFE
                     LADPAKAQDDARAAAVAAARTSAQAMATAAHVTLGAVVSVSDASSPTPIYYGMGAAVP
                     AADVKTPVQPGTQDVSAAVTVVFELD"
     gene            3554..>3906
                     /locus_tag="VIU37_12250"
     CDS             3554..>3906
                     /locus_tag="VIU37_12250"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY6014777.1"
                     /translation="MRPISMPSRVSEHQTGMLAAAGAAFVYGAAYPATAVALRSFSPL
                     GIAGWACTLALVLVVLLAAGGLIERPDTAGLDRARLVRLIVLSVLGGAGFIAAINIAV
                     ALSGPTITGFVAPLYA"
BASE COUNT          610 a         1446 c         1373 g          477 t
ORIGIN      
        1 agaccaggct cgccgagatg gcctccgaag gccgtgtcca ggaacagaag ctggcgagcg
       61 accgcgaaaa cctgcgctgc caggaggagc tcgagctcgc gctcgtcgcc cgccagcggc
      121 ggatgcaggc cgagacggtg gccaccgagc gccagaagct gcaactcgaa caggagcggt
      181 tccaggcgga gatggaggcc gaggagaacc gggtcaccac ggaggccccc gtccgacagc
      241 tgcggatcgc caaggagacg gacctgctcc gccaggagct cgagatgcgc gagctccagg
      301 cccaggtcaa ggcgctcgag gtcgaccagg agctcctcct gccacgagca cagcagcagc
      361 ttcggctcga actgctcccg gtggagcagg ccccgcagat cgtcgagtcg gcttcgaagg
      421 tgctgcgcgg caccaacctg gccgtctatg gcgagaacgc ccagttgctg ggccagctcg
      481 ccccggtctt cgacgtcctg acccaggcgg tccagcaggc gacgcagcgg accgtcccgc
      541 gggcaccgga gtacgccgag cccgcctgag tcgaggctgg gtgcggtctc cggccggcct
      601 cgggcgtgcc ctcgaacgtc atcgagaccg ggcgtcccag cgcggcccgc cgccggccgg
      661 gcaccgcatc gatccgactg ggcggcgtcg ccctcagacc acctcgcgcc ggatcgtcgc
      721 cgacgcgagc accgcgaaga ccgccacgaa cgcggccagc acgaggaggt cgagctggag
      781 cgggccgtag ccaaggtccg cgccacggat gacgacctgg cggagtccgt cggtcgcata
      841 ggtcagcggc aggacgcgtg cgatcgcctg gagaatgtcc ggcatcgagc tgaccgggaa
      901 gagcacgccg ctgagcagcg cctgcggcac gatcaccagc gggatgaact ggacgacctg
      961 gagctccgtc cgcgcgaacg tcgagagcag gatccccagg ctgaccgccc cgagggcgag
     1021 cagcatcacg accaggaagg cgaggccggc actgccggcc accgggaccg ccagcccgac
     1081 cgagaacgcc gccaggggcc cgatcgccgg cacctgcacg tcgagcagcg tccagcccag
     1141 cagcaccagc acctggatcg tcgcgaacag gccgaacccg aggctgtagc cgaggacgat
     1201 ctcgccgcgc gacaccggcg tcgccagcag ccgctcgagc gtgccgccga cccgttctcg
     1261 caggaagctg atgccggtca ggatgtagac gaagaagtac gcgaagaagc cgaggaagac
     1321 cggggcgagg tgatcgacca cgtccgaatc gggcgtcccg tagagggtct gggcgtccag
     1381 ccgcggcagg tgcaggccgg cggccggcag ggcctgggtc accgccgtgg cgatcgcccg
     1441 ctggagcgag atgagctgct ggctgtccgc cgtcggctcg agaccgggcg tgatcacggt
     1501 caggctcggc tcgttgcccg tcgccagtct ggccacgaag tccgctggca ggacgatcgc
     1561 gatgctcgcg gtgccgtcac ggagcgcggc gtcggcggcc gcccggtcgg gcgcctcgat
     1621 gaccgagcca ccatcggttc gcatcgcgcc ctcgagcgcg ccgacgatcg ccgccccggg
     1681 ctgcccggcc tcgttcacga ccacggcgga caccggggtc acgagctggc cgcggaggac
     1741 gtaggccatg agccccgtca ggacgatcgg cgccacgaac aggagcgcca tcgagcgccg
     1801 gtcgcgatgc agctcctgga ccaggcggcg gagcagcgcg agcacccggc gagcgctcat
     1861 gcccccgggc cctcggcgct gaactgcagg aacgcctgct cgaggtcgct cgtcccggcc
     1921 cgggcgcgca gctcgccacc cgacccctgg gcgatgaccc ggccggcacg catgaacagg
     1981 agctcgtcgc accggtcggc ttcgtccatc acgtggctgg agacgacgat ggtcgtccca
     2041 ccccgggcga gctcgtggaa gtacgcccag aactgggccc ggagcgccgg atcgacgccg
     2101 accgtcggct cgtcgaggaa caggaccggc ggccggtgga ccagcgcgca ggcgagcgac
     2161 agccgtcgtc gcaggccacc ggacagctgg ctggccagtg ccccggaccg gtccgacagc
     2221 tccaccacgg cgagggcggc cacggcggcg tccgggtcgc gaatgccgta catcgcggcg
     2281 aagaaccggg cgttctcggc ggcggtcagc tccgggtaga tcccgtcgct ctgggtcatg
     2341 tacccgatcc gcgccaggtt cgttctcgac ggcatctgga cgcccaggac ccgcgcctcg
     2401 cccgccgtcg gacggccgag acccgtcagc atccggatca gcgtggtctt gccggaaccg
     2461 ttcggcccca gcaccccgta gatccggccg gcggcgagct ggaagctcac cccgtcgacc
     2521 gcatggagct cgccgaacga cttccgaagg tcgatggcct ggaccgcggg tacgaggccc
     2581 atcgcgacgg tctgcatgtc gaccagaagg gtacttcccg gccgtggcga tccgctgctt
     2641 cggaacgcgc cctagcctcg gaaccggcgc cgccggacgt ccgtctcgcc gttggcgcca
     2701 cactcctgtc gggcgccgcc agcaaacgaa ggtggttccg atgtcccagt ctctgcgaac
     2761 catgggtgcg ttcgcgctcg gtggcctgat cgtcgccgtc gcggccctgg ccgtccgtcc
     2821 cggaccggtc gccggcgcgc cgaccaccgg caccgagccc gccctgcaca ccctgaccgt
     2881 caccggcaac ggcaaggtca cggtcgtgcc ggacgtcgcc cgagtctatc tcggcgtcac
     2941 gctgaccaag cccacggtga aggaggcccg cgacgccgcg gccaaggcga tgaccaacgt
     3001 gatcgccgcg atcaagggcc tcggcatcgc cgatgccgac atccagacga ccgggctgag
     3061 cctgtcggcc cgctacgcgg agaactcctc cacgaagatc gtcggctacg tcatcagcga
     3121 gcaggtccag gtgaccgtcc gcgatctcga caaggccggc gacgtcgtcg acgccgcgac
     3181 cgcgaagggc gcgaccgacg tgaacgggat ctcgttcgag ctcgccgatc cggccaaggc
     3241 ccaggacgat gcccgcgcgg ccgcggtggc cgcggcccgc accagcgccc aggcgatggc
     3301 cacggccgcg cacgtgacgc tgggcgccgt ggtgtcggtc tcggacgcct cgagcccgac
     3361 cccgatctac tacgggatgg gcgcggccgt cccggccgcc gacgtcaaga ccccggtcca
     3421 gccgggcacc caggacgtct cggccgcggt gacggtggtc ttcgagctcg actgacccgc
     3481 cgcggcggcg ggtcccggag gagctacccg ccgccgcaga actcgggcgc atcgccgagg
     3541 gtaccctcac gcgatgcgcc cgatctccat gcccagccgg gtttccgagc accagaccgg
     3601 gatgctcgcg gccgccggtg cggccttcgt ctacggagcc gcctacccgg ccacggccgt
     3661 ggcgctccgg tcgttctcgc cgctgggcat cgccggctgg gcgtgcacgc tggccctcgt
     3721 cctcgtcgtg ctcctcgcgg ccggcggcct catcgaacga ccggacaccg ccggcctcga
     3781 ccgggcgcgc ctggtccgcc tgatcgtcct gtccgtgctc ggtggcgccg ggttcatcgc
     3841 cgccatcaac atcgcggtcg cgctgagcgg gccgacgatc accggcttcg tggccccgct
     3901 ctacgc
//
LOCUS       DATDDI010000842         1774 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_434360, whole genome shotgun sequence.
ACCESSION   DATDDI010000842 DATDDI010000000
VERSION     DATDDI010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434360"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..598)
                     /locus_tag="VIU37_12255"
     CDS             complement(197..598)
                     /locus_tag="VIU37_12255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014778.1"
                     /translation="MANQFVVQLRNQPGSLAVLAEGLAAKGIDVRAIGGGGLGDVGHV
                     IMTTTDDEGTRNVLQAGGYTFAEGESIIAEIEDRPGGMARMARALSDAGVNIYGHLFL
                     GRWGDRAMLGFVVDKPDVARPILERKGPSAG"
     gene            693..1541
                     /locus_tag="VIU37_12260"
     CDS             693..1541
                     /locus_tag="VIU37_12260"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY6014779.1"
                     /translation="MPQLSPAIRRAIAAPAPGTPGRTEAGGRTWASISWGDPADPPIL
                     LIHGVTSDAGTYWRLGPALAAAGRFVVAVDLPGHGGTGSWRGEHRFVETARDVIGFVR
                     AAGLDRPGLVVLGHSWGGMVTAALPAAGLRRVTLILLDPPAMPVSVMEAMTRDPEEQP
                     GPDVESTMRQLEAAHPEWAEGDARAKAEGLARFDREAVRAVLFDNGDWDAGLASLADP
                     AAHGLPVWLIRGSFERGGLIPDAAVPAIAARIGADHVITIADAPHSPQRTHIEHLVEA
                     VLRALT"
     gene            complement(1557..>1774)
                     /locus_tag="VIU37_12265"
     CDS             complement(1557..>1774)
                     /locus_tag="VIU37_12265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014780.1"
                     /translation="FLFEEASPDALLEACRRFVDWFEPEARDRRTARWQALVDRGMAV
                     DFDWRAHSAPAYLEAYRRAVAIRRERA"
BASE COUNT          223 a          668 c          641 g          242 t
ORIGIN      
        1 gtagccgcgg cggcggagcg agtcgacctc ttcgtcggcg agatcgatgt cgtggttgac
       61 gaccaggacg cgagtcatgg cacacctctg gcgagttagc gccagcctcg attgaggcac
      121 cgatgcgagg cagtgccgaa cgtcatcgat tcggccgggc cgtccccggc ccgtccggga
      181 ccgcgaacgg cgtcgatcag cctgccgacg ggccctttcg ctcgaggatc ggtcgggcga
      241 cgtcgggctt gtcgacgacg aagccgagca tcgcccggtc gccccagcgg ccgaggaaca
      301 ggtggccgta gatgttgacg ccggcgtccg acagggctcg ggccatgcgg gccatgccgc
      361 cgggccggtc ctcgatctcg gcgatgatcg attcaccctc ggcgaacgtg tagccgccgg
      421 cctggaggac gttgcgggtg ccctcgtcgt cggtcgtcgt catgatcacg tggccgacgt
      481 cgccgaggcc gccaccgccg atggcgcgaa cgtcgatgcc cttcgccgcg aggccctcgg
      541 cgagcacggc cagcgagccc ggctggttgc ggagctggac gacgaactgg ttggccacgg
      601 cctgggtcct ccgggcgggt acgcgtgccg tgcgtgcggc gcgtccgcat cgtagccgtc
      661 gatacgatgt cgtcgtgcca ggagcgacct ccgtgcccca gctctcgccc gcgatccggc
      721 gcgccatcgc agcgccggca ccgggcacgc cggggcgcac cgaggccggt ggccggacct
      781 gggccagcat ctcgtggggc gacccggccg acccgccgat cctcctcatc cacggcgtga
      841 cgtccgatgc gggcacgtac tggcggctgg gccccgcgct cgcggccgcc ggccggttcg
      901 tcgtcgcggt ggacctgccg ggccacggcg gcacggggtc gtggcggggc gagcatcggt
      961 tcgtcgagac cgcccgcgac gtcatcggct tcgtgcgagc cgccggcctg gatcggcccg
     1021 ggctcgtcgt gctgggccat tcctggggcg gcatggtcac agccgccctg ccggccgccg
     1081 gcctccggcg cgtgacgctg atcctcctgg atcccccggc catgccggtc tcggtcatgg
     1141 aggcgatgac gcgcgacccg gaggagcaac cgggcccgga tgtcgagtcg acgatgcggc
     1201 agctcgaggc cgcccatccg gagtgggcgg agggcgacgc ccgggcgaag gccgagggcc
     1261 tggcccgctt cgatcgcgag gccgtccgcg cggtcctgtt cgacaacggc gactgggacg
     1321 ccggcctggc gagcctcgcc gacccggcgg cccacggcct gcccgtctgg ctgatccgcg
     1381 ggtcgttcga gcggggcggg ctcatcccgg acgccgccgt gcccgcgatc gctgcccgga
     1441 tcggcgccga tcacgtcatc acgatcgccg acgcgccgca ctcaccccag cggacgcaca
     1501 tcgagcacct cgtcgaggcc gtcctccgcg ccctcacctg accgtcggcc tcgcgcctac
     1561 gcccgctccc gccggatcgc gaccgcccgc cggtatgcct cgagatacgc cggcgcggag
     1621 tgcgcccgcc agtcgaagtc gaccgccatc ccgcgatcga cgagcgcctg ccatcgcgcc
     1681 gtccgacggt ctcgagcctc cggctcgaac cagtccacga accgccggca ggcctccagc
     1741 agcgcgtccg gcgaggcctc ctcgaacagg aagc
//
LOCUS       DATDDI010000843         1806 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_559675, whole genome shotgun sequence.
ACCESSION   DATDDI010000843 DATDDI010000000
VERSION     DATDDI010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_559675"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /locus_tag="VIU37_12270"
     CDS             complement(<1..495)
                     /locus_tag="VIU37_12270"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEY6014781.1"
                     /translation="MGGSARARWEALLAGGGPVLADGAMGTMLFAAGLQFGDPPEVWN
                     LSHPEVVRRIHRGYLDAGSRIVMTNTFGGNRMRLSLHRLETRVAEINRTAAILLRGEV
                     DAHGGDALVAGDIGPSGAIMAPTGTLDYAEAVDVFAEQASALLAGGVDLIWVETMSDL
                     GEIKA"
     gene            complement(596..>1806)
                     /locus_tag="VIU37_12275"
     CDS             complement(596..>1806)
                     /locus_tag="VIU37_12275"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF014803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEY6014782.1"
                     /translation="LGVVDGQVAALRAVLPPVVELAYAVKANPALAIVAHLGRLGLGA
                     DVASGGELATVTRAGFSADRVVMTGPGKRDDELRAAVAAGVRAITVESPGELARLESI
                     AAAAGRRQPVMLRAAVSEGDRLERVRLVGDDGAGKFGMDAGDLAAAACRASASPHLEL
                     LGLHAFGASNVLDASDLVEHVAATVATARRMARAVGAPLRLVDTGGGLGIPYEGHQES
                     LDLVRLGAGLHEVVAGWPSDPVLRDARLLLEPGRFLVGPAGAYLARVVDRKTVDGSAV
                     VILDGGVHHVLRPALVGQEHRIRALGTRPEPAGGGRLQPVTVAGPLCSGLDVFSQAAV
                     MSPPEVGDLLAILDVGAYGFTESMPLFLSHPIPAEVAVRGGRAELIRPRVDPGRWLDE
                     QVMPAWEVGV"
BASE COUNT          245 a          680 c          668 g          213 t
ORIGIN      
        1 cgccttgatc tcgccaaggt cggacatggt ctcgacccag atcaggtcca cgccgccggc
       61 gagcagggcg gacgcctgct cggcgaagac gtcgaccgcc tcggcatagt cgagcgtccc
      121 ggtcggcgcc atgatcgctc cgctcgggcc gatgtctccg gcgacgagcg cgtccccgcc
      181 atgggcgtcg acctcgccgc ggagcaggat cgccgccgtc cgattgatct ccgcgacccg
      241 ggtctcgagc cggtgcaggc tcaggcgcat ccggttgccg ccgaacgtgt tggtcatgac
      301 gatccgcgag ccggcgtcca ggtagccgcg atggatgcgc cggacgacct ccgggtggct
      361 caggttccag acctcgggcg ggtcgccgaa ctggaggccg gccgcgaaca gcatcgtgcc
      421 catcgccccg tcggcgagga cgggtccgcc gccggcgagg agcgcttccc agcgggcgcg
      481 cgccgatcct cccacccggc gccgttcctc gagtccggga aatgcggccg ggtcgaacgg
      541 ttcaggttgc ggggcatcgg agcgtggagc gcgcctcggt cgaagcatcg gccgactata
      601 ccccgacctc ccatgccggc atgacctgct cgtccagcca gcggccggga tcgacgcgtg
      661 gccggatgag ctcggcacgt ccgcctcgca cggccacctc cgcggggatc gggtgcgaca
      721 ggaacagcgg catcgactcg gtgaacccgt aggcgccgac gtcgaggatc gccaggaggt
      781 cgccgacctc gggcgggctc atgaccgccg cctggctgaa gacgtcgagc cccgagcaca
      841 gtggtcccgc gacggtgacc ggctggagac ggccgccgcc cgccggctcg gggcgcgttc
      901 cgagtgcccg gatccggtgc tcctggccaa cgagcgcggg tcgcaggacg tggtggaccc
      961 cgccgtcgag gatgaccacc gccgatccgt cgacggtctt gcggtcgacg acacgggcga
     1021 gataggcgcc ggcggggccg acgaggaagc ggcccggctc gaggaggagg cgcgcgtcgc
     1081 gcaggacggg gtccgagggc cagcccgcca cgacctcgtg gagcccggcg ccgaggcgga
     1141 ccaggtcgag cgactcctgg tgcccctcgt acgggatgcc gagcccgccg ccggtatcga
     1201 ccaggcggag cggggcgccg acggcgcggg ccatccggcg ggcggtcgcg acggtcgccg
     1261 cgacgtgctc cacgaggtcg ctcgcgtcga ggacgttcga tgccccgaac gcgtgcagcc
     1321 cgagcagctc gaggtgcggc gatgccgagg cccggcacgc ggcggccgcg agatcgccgg
     1381 cgtccatccc gaacttcccg gcaccgtcgt cgccgacgag ccggacgcgc tcgagccggt
     1441 cgccttccga gacggccgcg cggagcatca ccggctgccg ccgtcccgcg gcggcggcga
     1501 tcgactcgag gcgggccagc tccccgggcg attcgaccgt gatcgcccgg accccggcgg
     1561 ccaccgcggc tcggagctcg tcgtcgcgct tgcccgggcc ggtcatcacc acgcgatccg
     1621 cggagaaccc ggcccgggtc accgtcgcca gctcgccgcc cgaggccacg tccgccccga
     1681 gcccgaggcg ccccaggtgc gcgacgatcg cgagcgccgg gttcgccttg acggcgtacg
     1741 ccagctcgac gaccggcggg agcaccgctc gcaacgccgc cacctggccg tccaccacgc
     1801 cgaggt
//
LOCUS       DATDDI010000844         2729 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_247234, whole genome shotgun sequence.
ACCESSION   DATDDI010000844 DATDDI010000000
VERSION     DATDDI010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247234"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..569
                     /locus_tag="VIU37_12280"
     CDS             <1..569
                     /locus_tag="VIU37_12280"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY6014783.1"
                     /translation="TAFWVRLKVPRARPAIEFVTLLPFVIPPIVLVFGLISTYSHPPL
                     PFTHTDLGSSALLVAGYVILSFPYMYRAVDTGLRAIDIQSLTEASQSLGAGWLRIMIQ
                     VILPNLRVALLSGAFLTLAIVVGEFTMAIFLARPAFAPYLSLLGDSKPYQQAAVALIS
                     FALTWIAMGFIALLGRGSRSRITVAGAR"
     gene            585..1712
                     /locus_tag="VIU37_12285"
     CDS             585..1712
                     /locus_tag="VIU37_12285"
                     /inference="COORDINATES: protein motif:HMM:TIGR01187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014784.1"
                     /translation="MAFLELTGVQKRFGDVAAVLDFNLAADRGEFVSFLGPSGCGKTT
                     TLRMIAGFEQPTAGTITVNGTDITHRSPNQRNVGMVFQSYALFPNMTVAGNIGFGLKV
                     RKRPKAEIDRRVAELLALIHLEGRGDRYPYQLSGGQQQRVALARALAIEPQVLLLDEP
                     LSALDAKIRIVLRKEIRAIQRQLGITTVYVTHDQEEALSLSDRVVVMSEGRIEQIGTP
                     FEIYNFPATTFVASFVGTLNLVEAGVIDAGAGRLSLDGQEIRTAKAVTSAAAGGRVTL
                     ALRPEGISFGEGPDGSNRLRGTIEDINFLGSIVRIRLRLDGGRPADDATIISLDTFNE
                     PHLALPAVGETAVTHFPPEACFVLGAARDGAAARIDPETVV"
     gene            1709..2428
                     /locus_tag="VIU37_12290"
     CDS             1709..2428
                     /locus_tag="VIU37_12290"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEY6014785.1"
                     /translation="MNRRLAGIDLVVFDKDGTLIEFDAMWAGWSADLVLSLERASGIA
                     IREPLYEMLGVDPSSGRVLPGGGLAATPMARLRDLTRDLLVTAGLDGTEADAALDEAW
                     LAPDPVALARPLADLPDLFAGLRRSGRRIAVATSDDRDPTERTLAALGLAELIDGVAC
                     ADDGVAVKPAPDMVLRLCAQLAIEPARTAVVGDSAADLAMGRSAGAGLVVGVLTGVGD
                     TAHLEPLADLIVGSVADLGHD"
BASE COUNT          374 a         1026 c          929 g          400 t
ORIGIN      
        1 cgaccgcgtt ctgggtccgg ctcaaggtgc cgcgcgcgcg accggcgatc gagttcgtca
       61 cgctcctgcc cttcgtcatc ccgcccatcg tcctggtgtt cgggctgatc agcacctaca
      121 gccacccgcc gctgccattc acccataccg acctgggcag cagcgcgctg ctggtggcgg
      181 ggtacgtgat cctgtcgttc ccgtacatgt accgggcggt ggacacgggc ctccgggcga
      241 tcgacatcca gagcctgacc gaggcgtcgc agagcctcgg cgccggctgg ctgcggatca
      301 tgatccaggt catcctgccg aacctgcggg tcgcgctgct gagcggtgcg ttcctgaccc
      361 tcgccatcgt ggtcggcgag ttcacgatgg ccatcttcct ggcccgcccc gccttcgccc
      421 cgtacctctc gctcctgggc gacagcaagc cgtaccagca ggccgccgtg gccctgatca
      481 gcttcgccct gacctggatc gcgatgggct tcatcgccct gctcggacgc ggctcgcgga
      541 gccgcatcac cgtcgccggc gcccgctagg agaacgagga gaccatggcc ttcctggaac
      601 tgaccggcgt ccagaagcgg ttcggcgacg tcgcggccgt gctcgacttc aacctggccg
      661 ccgaccgtgg cgagttcgtc tcgttcctcg gcccgtccgg ctgcggaaag accacgacgc
      721 tccggatgat cgccgggttc gagcagccga ccgccggaac catcacggtc aacgggaccg
      781 acatcaccca ccgctcgccg aaccagcgca acgtcggcat ggtcttccag tcctacgccc
      841 tgttcccgaa catgacggtg gccggcaaca tcgggttcgg gctgaaggtc cgcaagcgcc
      901 cgaaggccga gatcgaccgg cgcgtcgccg agctgctggc gctgatccac ctcgagggcc
      961 gtggcgaccg ctacccgtac cagctgtccg gcgggcagca gcagcgcgtg gccctcgcgc
     1021 gcgcgcttgc gatcgagccc caggtcctgc tcctcgacga gcccctctcg gcgctcgacg
     1081 ccaagatccg gatcgtcctg cgcaaggaga tccgggcgat ccagcgccag ctcgggatca
     1141 ccaccgtgta cgtgacccac gaccaggagg aggcgctgtc gctgtccgac cgggtcgtgg
     1201 tcatgagcga gggccggatc gagcagatcg gcacgccgtt cgagatctac aacttcccgg
     1261 cgacgacgtt cgtggcttcg ttcgtcggga cgctcaacct cgtggaggcc ggcgtcatcg
     1321 acgccggcgc cggccggctg tcgctcgacg gccaggagat ccggacggcc aaggcggtca
     1381 ccagcgccgc ggccggcggg cgggtgacgc tcgccctccg acccgagggg atctcgttcg
     1441 gcgaggggcc ggacggctcg aaccggctgc ggggcacgat cgaggacatc aacttcctcg
     1501 gctcgatcgt ccgcatccgg ctgcgcctgg acggcggccg gccggccgac gacgccacga
     1561 tcatctcgct cgacacgttc aacgaaccgc acctggcgct gcccgcggtc ggagagaccg
     1621 cggtcacgca ctttccgccg gaagcgtgct tcgtgctcgg cgcggcccgc gacggcgcgg
     1681 ccgccaggat cgatcccgaa acggtggtgt gaaccgtcgg ctggccggga tcgacctggt
     1741 cgtcttcgac aaggacggca cgctgatcga gttcgacgcg atgtgggccg gctggtccgc
     1801 ggatctcgtc ctcagcctcg agcgcgcgtc cgggatcgcg atccgcgagc cgctctacga
     1861 gatgctcggc gtcgacccgt cgtcggggcg cgtgctgccg ggaggcggcc tggccgcaac
     1921 gccgatggcg cgcctgcgcg acctgacccg cgacctcctc gtgacggccg gcctggacgg
     1981 gaccgaggcc gacgcggcgc tcgacgaggc gtggctcgcg cccgatccgg tcgcgctggc
     2041 ccgtccgctc gcggacctcc cggacctgtt cgccggtctc cgccgcagcg gcaggcgcat
     2101 cgccgtggcg accagcgacg accgcgaccc gaccgagcgg acactcgccg cgctcggact
     2161 cgcggagctg atcgacggcg tcgcgtgcgc ggacgacggc gtcgcggtca agcccgcccc
     2221 ggacatggtc ctccggctgt gcgcgcagct cgcgatcgag cccgcccgca ccgccgtggt
     2281 gggcgactcg gccgcggacc tcgcgatggg gcggtcggcc ggcgccggcc tggtggtggg
     2341 cgtcctgacc ggcgtcgggg acacggccca tctcgagccg ctcgccgacc tgatcgtcgg
     2401 ctcggtcgcc gatctcgggc acgactgacc cacaccccac cccaccgccc ggtgccggtg
     2461 gtaccgatgg gctatcgcgg tggcgcgtcc ccgcacctac ggtgggtcct cacacgccgc
     2521 ccgattcggg acggccctgg tcgaccggag gaactcgccg acacatggcc cgtgcgcagc
     2581 agcgctccat caccgacgcg agaccgacgg ccaacccgga ccaccccacc cgggccgatg
     2641 ccctgcgccg gtttgccgcc gaggtgagca gccggcagga cctcgccggc ctcttcgagg
     2701 acgtcatcga cgagtcgttc accctgttc
//
LOCUS       DATDDI010000845         3525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_372156, whole genome shotgun sequence.
ACCESSION   DATDDI010000845 DATDDI010000000
VERSION     DATDDI010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372156"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2196)
                     /gene="gyrA"
                     /locus_tag="VIU37_12295"
     CDS             complement(<1..2196)
                     /gene="gyrA"
                     /locus_tag="VIU37_12295"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEY6014786.1"
                     /translation="MTDDLGDIRAIRIEDEMRVSYLDYAMSVIVSRALPDVRDGLKPV
                     HRRILYSMGEMGLSATSSYRKCAAIVGEVMGKYHPHGDVALYDALVRLAQDFSMRYPL
                     VDGQGNFGSVDGDAPAAMRYTEARLTAIAGEMLADIDKETVDFVDNYDGTQQQPSVLP
                     AKLPNLLVNGSSGIAVGMATNIPPHHLGEIADATIALIDDPELTSDDLCKYVQGPDFP
                     TGGTIFRFEKQRNILTGEWETVDAIRQMYAHGHGRVVMRAQVAFEEVRGDRTAIIVNE
                     LPYQVNKASLLEKIADLVKEKRIDGIGDLRDESDRDGMRIYIEIKRDANPHKVLNNLF
                     KHTPMQLAFNTNMLALVDGQPQTLPLRSVLVHYLEHRREIIRRRTEFDLGKARARAHI
                     LEGLKIALDNLDAVIKTIRDSADVDLARSNLMSRFDLSELQAQAILDMRLARLAALER
                     KKIEDEYLAIIQLIAELEDILANPARVSQIIKDELTELKKKYAGERRTRVADDSSREM
                     TDEDLIADEDVVITISGRGYIKRQPVATYRRQHRGGKGIIGHVTREEDAVGHLLVANT
                     HHWALFFTNRGRVFSAKVHAIPDASRQAKGLAIINLPGVQVESGEVPMATITLPDFTA
                     GTYLVLATRKGIIKKTPLEQFERVRSTGIRAITIDPDDELAWFDVSTGSDDIIIATSQ
                     CKIARFHEGETRAMGRDAAGVIGIRLAREGDYVVGMSVVQQDTDLLVLTE"
     gene            complement(2217..3185)
                     /locus_tag="VIU37_12300"
     CDS             complement(2217..3185)
                     /locus_tag="VIU37_12300"
                     /inference="COORDINATES: protein motif:HMM:NF020296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEY6014787.1"
                     /translation="MIAAEPVSATTARATAFVADRRGPAEAFGVSLSDWVNDPDALAV
                     RLREGLNGLADPEYLEGQRRIAPGIGTLFGVRWPLMAAVQRGFRRGTRRVRPTPLLFV
                     ADRLFREPELEIRWFAFGVLGQTLEGEPERTWQLLRRAARDAGDWITVDSLAYPYRDG
                     IRREAYRWAELEQLVYSPSRWERRLVGSTIATMTHGRRAAPDPDFARLALGLLDLLIG
                     DAEPDVQKALSWAYRSLAQVDLAATTAVLETQTDLALGTADGHRAWVIRDALSKLEPA
                     TADRLRNRLTGIRKRPGAPSTSRASEVSARFGELPDPSIHPDPPLA"
     gene            complement(3182..>3525)
                     /locus_tag="VIU37_12305"
     CDS             complement(3182..>3525)
                     /locus_tag="VIU37_12305"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEY6014788.1"
                     /translation="WEGIAHGGILCTILDEVMAWALVGEDNWGVTARMSVDFKKPASV
                     GMRLRADGWVTRSRRRLVETGARIVDPVSGTELATATGLYVAADEDRKRELQRRYGFR
                     SLLVERDGGRA"
BASE COUNT          491 a         1188 c         1250 g          596 t
ORIGIN      
        1 ctcggtcaac accagcaggt cggtgtcctg ctggacaacg ctcataccga cgacgtagtc
       61 cccttcgcgg gccaggcgga tgccgatgac gcccgcggcg tcgcgaccca tggccctggt
      121 ctcgccctcg tggaagcggg cgatcttgca ctgggaggtg gcgataatga tgtcgtccga
      181 gccggtcgaa acgtcgaacc aggcgagctc gtcgtcgggg tcgatggtga tcgcccggat
      241 ccccgtcgag cggacccgct cgaactgctc gagtggcgtc ttcttgatga tccccttgcg
      301 cgtcgcgagg acgagatagg tcccggccgt gaagtccggc agggtgatcg tcgccatcgg
      361 gacctcgccg gattccacct ggacccccgg caggttgatg atcgcgaggc ccttggcctg
      421 gcggctggcg tccgggatgg cgtggacctt ggcgctgaag acgcggcccc ggttcgtgaa
      481 gaagagcgcc cagtgatggg tgttcgcgac gagcaggtgc ccgaccgcgt cctcctcgcg
      541 ggtgacgtgg ccgatgatcc ccttgccgcc gcggtgctgg cgccggtagg tcgccacggg
      601 ctggcgcttg atgtagccgc ggcccgagat cgtgatgacc acgtcctcgt cggcgatcag
      661 gtcctcgtcg gtcatctcgc gcgacgagtc gtcggcgacg cgggtccggc gctcgccggc
      721 gtacttcttc ttcagctcgg tcagctcgtc cttgatgatc tggctgaccc gggccgggtt
      781 ggccaggatg tcctcgagct cggcgatgag ctggatgatc gcgaggtact cgtcctcgat
      841 cttcttccgc tcgagcgcgg ccaggcgcgc cagccgcatg tcgaggatcg cctgcgcctg
      901 cagctcggac aggtcgaacc ggctcatgag gttggaccgg gccaggtcga cgtcggccga
      961 gtcgcggatc gtcttgatca ccgcgtcgag gttgtcgagc gcgatcttga ggccttcgag
     1021 gatgtgcgcc cgggcacgcg ccttgccgag atcgaactcg gtccgccggc ggatgatctc
     1081 gcggcggtgt tcgaggtagt ggaccaggac gctgcgcaac gggagcgtct ggggctggcc
     1141 gtcgacgagg gccagcatgt tggtgttgaa cgccagctgc atcggggtgt gcttgaacag
     1201 gttgttgagc accttgtgcg ggttcgcgtc gcgcttgatc tcgatgtaga tgcgcatccc
     1261 gtcacgatcg gactcgtcgc gcaggtcgcc gatcccgtcg atccgcttct ccttgaccag
     1321 gtcggcgatc ttctcgagca ggctggcctt gttcacctgg tacggcagct cgttgacgat
     1381 gatcgcggtc cggtcgccgc ggacctcctc gaacgccacc tgcgcgcgca tcacgacccg
     1441 cccgtggccg tgggcgtaca tctgccgaat ggcatcgacc gtctcccact cgccggtcag
     1501 gatgttgcgc tgcttctcga agcggaagat cgtccccccg gtcgggaagt ccggtccctg
     1561 gacgtacttg cagaggtcgt cggaggtcag ctccggatcg tcgatcagcg cgatcgtcgc
     1621 gtcggcgatc tcgcccaggt gatggggcgg gatgttggta gccatgccga cggcgatgcc
     1681 cgagctgccg ttgaccagca ggttgggcag cttggccggc agcaccgacg gctgctgctg
     1741 ggtgccgtcg tagttgtcga cgaagtcaac ggtctccttg tcgatgtcgg cgagcatctc
     1801 tccggcgatg gcggtcagcc gggcctccgt gtaccgcatc gccgccggcg cgtccccgtc
     1861 caccgacccg aagttgccct gcccgtcgac gagcgggtag cgcatcgaga agtcctgtgc
     1921 gaggcggacc agggcgtcgt acagggccac gtcgccgtgc gggtggtact tgcccatcac
     1981 ctcgccgacg atcgccgcgc acttgcggta cgagctggtg gccgacagcc ccatctcgcc
     2041 catcgagtac aggatgcggc gatggacggg cttcaggccg tcgcggacat caggcagggc
     2101 gcgcgacacg atcacgctca tcgcgtaatc gaggtagctg acccgcatct cgtcctcgat
     2161 gcggatggct cggatgtcgc ccaggtcgtc agtcacggtc ggctactcct gtcgggtcag
     2221 gcgagtggcg ggtctggatg gatggacgga tcgggcagct cgccgaaccg ggcactgacc
     2281 tccgaagccc gcgacgtcga cggggcgccg ggccgcttgc ggatcccggt gaggcggttc
     2341 cgaagccgat cggccgtggc cggttcgagc ttggacagcg cgtcgcggat cacccaggct
     2401 cggtgtccgt cggccgtccc gagcgcgagg tcggtctggg tctccagcac ggcggtcgtc
     2461 gccgcgaggt cgacctgggc gagagatcgg taggcccagc tgagcgcctt ctggacgtcg
     2521 ggttcggcgt cgccgatcag caggtcgaga aggccgagcg ccagtcgggc gaagtccggg
     2581 tcgggggcgg cccgtcgccc gtgggtcatc gtcgcgatcg tggatcctac gagccggcgc
     2641 tcccagcgcg acggactgta gacgagctgc tcgagctcgg cccagcggta cgcctcgcga
     2701 cggatcccgt cgcggtacgg ataggcaagc gagtcgaccg tgatccagtc gccggcgtcg
     2761 cgcgccgccc gtcggagcag ctgccaggtc cgttccggct cgccttcgag cgtctggccg
     2821 agcacgccga acgcgaacca gcggatctcg agctccggct cgcgaaacag ccggtcggcg
     2881 acgaacagga gcggcgtcgg ccgtacacgg cgcgtgccac gccggaaccc gcgctggacc
     2941 gcagccatga gcggccagcg gaccccgaac agcgtcccga tcccgggagc gatccgccgc
     3001 tgaccctcga ggtattcggg gtcggcgagc ccgttcaggc cctcgcggag ccggacggcg
     3061 agggcgtccg ggtcgttcac ccagtcggac aggctcacgc cgaacgcctc ggcgggtccg
     3121 cgacggtcgg ccacgaatgc ggtggcccgc gcggtcgtcg cgctgaccgg ctcggccgcg
     3181 atcatgctcg acctccgtcg cgctcgacga gcaggctgcg gaacccgtac cgccgctgca
     3241 gctcgcgctt ccggtcctcg tccgcggcga cgtagaggcc ggtcgcggtc gccagctccg
     3301 tgcccgagac cgggtcgacg atccgggctc cggtctcgac caggcggcgc cgcgagcgcg
     3361 tcacccagcc gtcggcgcgc agccgcatcc cgaccgacgc gggcttcttg aagtcgaccg
     3421 acatccgggc cgtgacgccc cagttgtcct cgccgacgag ggcccaggcc atcacctcgt
     3481 caaggatcgt gcacaggatc ccgccatggg cgattccttc ccagc
//
LOCUS       DATDDI010000846         2529 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_725862, whole genome shotgun sequence.
ACCESSION   DATDDI010000846 DATDDI010000000
VERSION     DATDDI010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_725862"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VIU37_12310"
     CDS             <1..669
                     /locus_tag="VIU37_12310"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HEY6014789.1"
                     /translation="SRMRRVIAERLTLSHATIPQFSVTVAVDVTRLQARREELKLAGL
                     RLSVTDFVLAAVARSLVDFPDVNARTDGAMVWRRRRVHLGFAVSLPGGLVVPVIRDAD
                     HLSVVELHERATALAAAARDGSLGPDELTGSTFTVSNLGMYGVDAFDAIINPGEAAIL
                     AVASAVPTPVALEGGIAIRSIMRLTLSADHRLVDGELGARFLGDVRRRLEDPGSLRLE
                     LANA"
     gene            992..>2529
                     /gene="valS"
                     /locus_tag="VIU37_12315"
     CDS             992..>2529
                     /gene="valS"
                     /locus_tag="VIU37_12315"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEY6014790.1"
                     /translation="MPDLPKAYTPRDVEGAIYERWVAADVFAPDGAGSTADPALPPFT
                     IIQPPPNVTGSLHLGHAQRTAVEDLMIRHARMRGHRALFLPGLDHASIAAQFVLDGIL
                     AREGESRQSLGRERYLERMATFVETTRGVMLGQQRRVGASADWGRLRFTMDAVSAKAV
                     RTAFERLYRADLAYRTEALVNWCPGCRTSVSDLEVVPTPETGTLWTVRYHLIDPTTGA
                     PDPEATVSVATTRPETILGDTAVAVHPGDPRYADVVGRLVRIPFVERDVPVIADDVVD
                     RAFGTGAVKITPGHDHDDYATGLRHGLPQLTILADDATIMGTGTAYDGLDRFAARAAV
                     VADLEARGDLVGSRPHEMVIGRCQRSHDVIEPRLKTQWFIRTAPLAERALEATRAGRT
                     RILPERFEKTWEHWLTTIRDWNVSRQLWWGHRIPAWYCPDGHVTVSEREDGPAGCEAC
                     GHAASELVQDPDIFDTWFSSGLWPFSTMGWPDDTATLRTFYPTSVMETGHDIIFFWVA
                     RMMM"
BASE COUNT          366 a          929 c          886 g          348 t
ORIGIN      
        1 tcccggatgc gacgggtcat cgccgagcgg ctgacgctga gccacgcgac gatcccgcag
       61 ttcagcgtga cggtcgcggt cgacgtcacc cggctccagg cccggcgcga ggagctcaag
      121 ctcgccggcc ttcggctgag cgtgaccgat ttcgtccttg ccgcggtcgc tcgcagcctg
      181 gtcgacttcc cggacgtcaa cgcccggacc gacggcgcga tggtctggcg ccggcggcgg
      241 gtccacctcg gcttcgcggt ctcgctgccc ggcgggctcg tggtcccggt gatccgtgac
      301 gccgaccacc tgagcgtggt cgagctgcat gagcgggcga ccgccctggc ggccgcggcg
      361 cgagacggat cgctcggccc cgatgagctg acgggcagca ccttcacggt gtccaacctc
      421 gggatgtacg gcgtcgacgc cttcgacgcg atcatcaacc cgggtgaggc cgccatcctc
      481 gcggtcgcca gtgcggtccc gacgcccgtc gcgctcgagg gcgggatcgc cattcgatcg
      541 atcatgcggc tgacgctgtc cgcggatcat cggctggtcg acggcgagct cggggcgcgg
      601 ttcctcgggg atgtccgccg ccggctcgag gatccgggtt cgctgcgcct ggagctcgcg
      661 aacgcctgac cccgcgatcc tggcggcagc cgaagcgcgg ccgcccgcat gctagactcc
      721 cggtctcacg gcgacgaccg agaggagtag cgacgggacg gccccgaagc gagcgcggga
      781 cggtgcgagc cgcgcgggca accggcgtga aggtcgctcg cgagccgtgc gggagacgcc
      841 cgttagcgcg tcgagagggc accgggtcca ggcggccgcg atgagtggcc gggccgcgac
      901 gagcggcacg acccgggttg ccgaaccagc aggtggtacc acgacccgtt cgtccgctgg
      961 acgagcgggt cacgtgattc tcggagcgac gatgccggac ctacccaagg cctatacccc
     1021 gcgagacgtc gaaggcgcga tctacgaacg atgggtcgcg gcggacgtgt tcgccccgga
     1081 cggtgccggc tcgaccgccg atccggccct gccgccattc acgatcatcc agccgccgcc
     1141 gaacgtgacc ggatcgctcc acctcgggca cgcccagcga accgcggtcg aggacctgat
     1201 gatccgccac gcccggatgc gcggccatcg cgcgctcttc ctgcccggcc tcgaccacgc
     1261 ctcgatcgcg gcccagttcg tcctcgacgg gatcctcgcc agggaagggg agagccgcca
     1321 gagcctcggc cgcgagcgat acctcgagcg gatggcgacc ttcgtcgaga ccacccgtgg
     1381 cgtgatgctg gggcagcaac ggcgggtcgg cgcgtcggcc gactggggac ggctccggtt
     1441 cacgatggac gccgtctcgg ccaaggcggt tcggacggcg ttcgaacggc tctaccgggc
     1501 cgacctcgcc taccggaccg aggcgctcgt caactggtgc ccgggctgcc ggaccagcgt
     1561 gagcgacctc gaagtggtcc cgacgcccga gaccgggacg ctctggacgg ttcgctacca
     1621 cctcatcgac ccgacgacgg gcgcccccga tccggaggcc accgtcagcg tcgcgaccac
     1681 ccggcccgag acgatcctcg gcgacaccgc ggtcgccgtc cacccgggcg atccgcgcta
     1741 cgcggacgtc gtcggccgcc tggtccggat cccgttcgtc gagcgcgacg tgccggtcat
     1801 cgccgacgac gtggtcgacc gcgcgttcgg gaccggcgcc gtcaagatca cgcccggcca
     1861 cgaccacgac gactacgcga ccgggctgcg ccacggcctc ccgcagctca cgatcctggc
     1921 cgacgacgcg acgatcatgg ggaccggcac cgcctacgac ggccttgacc gctttgccgc
     1981 acgtgccgcc gtcgtcgccg atctcgaggc gcgcggcgac ctcgtcggct ccaggccaca
     2041 cgagatggtc atcggccgct gccagcgcag ccacgacgtc atcgagccgc gcctgaagac
     2101 gcagtggttc atccggacgg caccgctcgc cgagcgggcg ctcgaggcga cgcgggccgg
     2161 acggacccgg atcctgcccg agcggttcga gaagacctgg gagcactggc tgaccaccat
     2221 ccgagactgg aacgtgtcac gccagctgtg gtggggccat cgcatcccgg cctggtactg
     2281 cccggacggc cacgtgacgg tctccgagcg cgaggacggc cccgcggggt gcgaggcctg
     2341 tggccacgcc gccagcgagc tggtccagga tcccgacatc ttcgacacct ggttctcgtc
     2401 cggcctctgg ccgttctcga ccatgggctg gccggacgac acggccacgc tgcggacctt
     2461 ctaccccacc tcggtgatgg agaccgggca cgacatcatc ttcttctggg tggcccggat
     2521 gatgatgat
//
LOCUS       DATDDI010000847         3957 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_642745, whole genome shotgun sequence.
ACCESSION   DATDDI010000847 DATDDI010000000
VERSION     DATDDI010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642745"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1272)
                     /locus_tag="VIU37_12320"
     CDS             complement(<1..1272)
                     /locus_tag="VIU37_12320"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014791.1"
                     /translation="MTRQAPPRRFVTWLSRWSAVAPLLVAEFIVWLGFGALLPVLPIY
                     FTSHGVDLATLGLVIAAWPAARLVGEPAFGWLADRTRRVPMMVAGLVLAGGFTMLPLV
                     LTGPLAFIVLRAATGLATAIYDPAARGYLTDATAPERRGEAFGLYGAAQMGGLLLGPA
                     IGAFGADRFGGIGFVFVFGGVAAVLAAIPIALRSHETGSRSHLRLPPDGTEFPPDSPS
                     IARRAASDVELEQAGPGRAGAPVRLLNRGLVAALVINVGGNFAAGTYEVIWSLFLRHL
                     GAGLGLIGLTFAMFGLPILVFSPMAGRLVDRRGSFGFIVVGSVLPALTGFLYTRLVDP
                     NLAIPLILVEATGFALLNPALYAVVAANSPPGRSSTAQGLFGAAGTVGFIVASLVAGV
                     LAGVDILYPLYVFSAVMITSLVAGLLIGGRRL"
     gene            1433..1768
                     /locus_tag="VIU37_12325"
     CDS             1433..1768
                     /locus_tag="VIU37_12325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014792.1"
                     /translation="MLLPPWLLAVGLVLGLLVLLPARRLQLAGLSGRAIGFYAVALWL
                     AGLVLAVRPVGARFLIPIALLAYIAPFVAAPETVGRVLRRGRPPDPPADPRPPMKNVT
                     PPGDPPAPG"
     gene            1881..2495
                     /locus_tag="VIU37_12330"
     CDS             1881..2495
                     /locus_tag="VIU37_12330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014793.1"
                     /translation="MTIPRWRLALSASALVVLGAVGAGLVQAAATPAASTVPATTAAA
                     ANGSAADAATAAGDGAVLLDTLALMSDPTSSGLAVPAQLVALRDRVQDRIANVRGRLV
                     HGTLTVLDRDGKLVTYQLDHGTVSAIGGASVTIAEAGGSSVTLATTSDTRIRRAARPA
                     TAVDLKIGDEVVVRSVVTAGSATAKLVIVLPPRPVPAAPSGGNG"
     gene            2558..3742
                     /locus_tag="VIU37_12335"
     CDS             2558..3742
                     /locus_tag="VIU37_12335"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY6014794.1"
                     /translation="MRTDLGWILDPATTFLTHGTFGACPAAVLAEQRALRDRMEAEPV
                     RFLDLDLPGLLDAGRARIGRFLNADPEGLAFVPNATTGVNTVLQALRFEPGDELLAND
                     HEYNATINAMRAVAARDGAHVTIARIPFPIRDGGEALEAILAAVTPRTRLVVVSQVTS
                     PTALILPVEPLVAALAERGIDTLVDGAHAPGMIPVDLDRLGAAYWTGNGHKWLCGPKG
                     AAVLWVRADRRDRIRPIVVSHGANTPIADRSRFRLEFDWTGTPDPTAYLALPAAIDWM
                     AAWPGGWPAIMAANHELVLAGRDRLAAGLGIDPPAPDSMLGAMAALPLERVPDEAAAR
                     ELGRRLLEEHRIQVPVGPWPVRAARAEGVEPRIVIRISAQRYNEPADYDRLVEALGGL
                     LP"
     gene            complement(3739..>3957)
                     /locus_tag="VIU37_12340"
     CDS             complement(3739..>3957)
                     /locus_tag="VIU37_12340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014795.1"
                     /translation="STARPRTSPTSMTDRKPFLLRLDPVTFAALQRWAADDLRSVNAQ
                     LEFLLRRALRDAGRLPERKDRRPVEPDA"
BASE COUNT          552 a         1486 c         1445 g          474 t
ORIGIN      
        1 tagccgccgg ccaccgatca gcagcccggc gacgagactc gtgatcatca ccgcgctgaa
       61 cacgtagagc gggtacagga tgtcgacgcc ggccaggacg ccggccacca gcgaggcgac
      121 gatgaagccg accgtccccg ccgcaccgaa caggccctgc gcggtcgacg accggcccgg
      181 cggtgagttc gcggccacca ctgcgtacag cgcggggttg agcagggcga accccgtcgc
      241 ctcgaccagg atcagcggaa tcgcgaggtt cgggtcgacg aggcgcgtgt acaggaaccc
      301 ggtcagcgcc ggcagcaccg agccgacgac gatgaacccg aacgagccgc gccggtcgac
      361 cagccgcccg gccatcggcg agaagaccag gatgggcagc ccgaacatcg cgaacgtcag
      421 gccgatcagt ccgagcccgg cgccgagatg ccggaggaac aggctccaga tcacctcgta
      481 ggtgccggca gcgaagttcc cgccgacgtt gatgacgagc gcggcgacca ggccgcggtt
      541 gagcagccgc acgggggccc ctgcccggcc cgggcccgcc tgctcgagct cgacgtcgga
      601 tgccgcgcgt cgcgcgatcg acggcgagtc gggcgggaac tcggtgccgt ccggcgggag
      661 gcgcaggtgg ctgcgcgatc cggtctcgtg cgagcggagc gcgatcggga tggcggccag
      721 gacggcggcg acgccgccga agacgaagac gaatccgatc ccgccgaacc ggtccgcccc
      781 gaacgccccg attgccggac cgagcaggag tccacccatc tgggcggcgc catacagccc
      841 gaatgcctcg ccgcgtcgct cgggcgccgt ggcgtcggtg agatagccgc gagcggccgg
      901 gtcgtagatc gcggtggcca ggccggtggc cgcccgcagc acgatgaagg cgagcggacc
      961 cgtcagcacc agcggcagca tcgtgaagcc gccggccagg acgagcccgg ccaccatcat
     1021 cgggactcgc cgcgtccgat ccgccagcca gccgaaggca ggctccccga ccagccgcgc
     1081 ggcgggccag gcggcgatga ccagcccgag cgtcgcgagg tcaacgccgt ggctggtgaa
     1141 gtagatcggc aggacgggga gcagggcccc gaacccgagc cagacgatga actcggccac
     1201 cagcaacggc gcgaccgcgc tccagcgcga gagccaggtc acgaagcgac gcggcggagc
     1261 ctggcgggtc atcgggccag cgtaccgtcc ggccgggtcg gctcccgggc gggatgcagg
     1321 ccgcaggaca acgcgggcgg gcgtcggcgg gagcgcggcg acccgcgtgt cggtcggagc
     1381 gtcgtggttt cgcgcgcccg gccggcgcgc gtcggacgcc tatgatcggt gggtgctgct
     1441 ccctccctgg ctcctcgcgg tcggcctggt cctcggcctc ctggtgctgc tccccgcccg
     1501 ccggctccag ctcgccgggt tgagcggacg cgcgatcggg ttctacgccg tcgcgctctg
     1561 gctggcaggg ctcgtgctgg ccgtcaggcc ggtcggcgcg cgcttcctga tcccgatcgc
     1621 cctgctcgcc tacatcgccc cgttcgtcgc cgcgccggag accgtgggcc gggtgctccg
     1681 tcgcggccgg ccgccggatc caccggccga cccacggcca cccatgaaga acgtgacccc
     1741 gccgggcgat cccccggcgc ccggctgacc ttacgcgccg cttacgcgcc ggcgtcgcgc
     1801 ggctgacggc tccgtcccat cgtgacggtc gcggtccgaa ggaccacgcg acccccacac
     1861 cacggaacgg agaccagacc atgaccattc ctcgctggcg cctcgccctc tccgcgagtg
     1921 cgctcgtcgt cctcggtgcc gtcggcgcgg gcctcgtcca ggccgcggcg acgccggctg
     1981 cgtcgaccgt gccggcaacg accgctgcgg cggcgaatgg gtctgccgcg gacgccgcga
     2041 ccgcggccgg cgacggcgcc gtcctcctcg acaccctcgc gctgatgagc gacccgactt
     2101 cgagcggcct ggccgtgccg gcccagctgg tcgcgctgcg cgaccgggtc caggaccgca
     2161 tcgccaacgt tcgcggtcgg ctcgtccacg gcacgctgac cgtcctcgac cgggacggga
     2221 agctcgtgac ctaccagctc gatcacggca cggtgtcggc catcggcggc gcgtcggtga
     2281 cgatcgccga ggccggcggc tcgagcgtca cgctggcgac cacctcggac acccgcatcc
     2341 gcagggccgc gaggcccgcg acagcggtcg acctgaagat cggcgacgag gtcgtggtcc
     2401 gctcggtcgt gaccgcgggc tcggccacgg ccaagctcgt gatcgtgctg ccgccgcgtc
     2461 ccgtaccggc ggccccgtcg ggcgggaacg gctagcccga gacccgggcg gcgggccgcg
     2521 ccccaccggg cgtcgcccgc cgccgcatca tgtccggatg cggacggacc tcggctggat
     2581 cctggacccg gcgacgactt tcctgaccca cgggacgttc ggggcgtgtc ccgcggcggt
     2641 tctcgccgaa cagcgggcgc tgcgcgaccg gatggaggcc gagccggtcc gcttcctcga
     2701 cctcgacctg cccggattgc tcgacgccgg gcgcgccagg atcggccggt tcctcaacgc
     2761 cgatcccgag ggcctggcct tcgtcccgaa cgcgacgacc ggcgtcaaca ccgtgctcca
     2821 ggcactccgc ttcgagccgg gcgacgagct gctggccaac gaccatgagt acaacgcgac
     2881 gatcaacgcg atgcgcgccg tggcggcccg cgacggcgcg cacgtgacga tcgcccggat
     2941 cccattcccg atccgcgacg gcggcgaggc gctcgaggcg atcctcgccg cggtcacgcc
     3001 gcggacgcga ctcgtcgtcg tcagccaggt caccagcccc acggcactga tcctgccggt
     3061 cgagccgctc gtggccgccc tcgccgagcg cgggatcgac acgctcgtgg acggggcgca
     3121 cgcgccgggc atgatccccg tcgacctcga tcgcctgggc gccgcgtact ggaccgggaa
     3181 cggccacaag tggctgtgcg ggccgaaggg cgccgccgtc ctgtgggtcc gcgccgaccg
     3241 gcgcgaccgg atccggccga tcgtcgtgtc ccacggggcg aacacgccga tcgcggatcg
     3301 atcgcgcttc cggctcgagt tcgactggac cggcacgccg gatccgaccg cctacctggc
     3361 gctcccggcg gccatcgact ggatggcggc ctggcccggc ggctggcccg cgatcatggc
     3421 cgcgaaccat gagctcgtgc tggccggtcg cgaccgcctg gcggcagggc tcgggatcga
     3481 tccgccggcg cccgattcga tgctcggcgc gatggcggcg ctgccgctcg agcgcgtgcc
     3541 cgacgaggcc gcggccaggg agctgggccg ccgcctcctg gaggagcacc ggatccaggt
     3601 cccggtcggg ccgtggccgg tccgcgccgc gcgggccgaa ggcgtcgagc ccaggatcgt
     3661 catccggatc tcggcgcagc gctacaacga gccggccgac tacgaccggc tcgtcgaggc
     3721 gctcggaggg ctgcttccct aggcgtccgg ctcgaccgga cgacgatcct tccgctcggg
     3781 caggcgacct gcgtcgcgga gcgcccgccg cagcaggaac tcgagctgcg cgttgaccga
     3841 tcggagatcg tccgcggccc agcgctggag ggccgcgaac gtcacgggat cgagtcggag
     3901 aaggaacggc ttccggtcgg tcatcgaggt gggactcgtc ctcgggcggg ccgtcga
//
LOCUS       DATDDI010000848         2403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_413781, whole genome shotgun sequence.
ACCESSION   DATDDI010000848 DATDDI010000000
VERSION     DATDDI010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413781"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VIU37_12345"
     CDS             <1..255
                     /locus_tag="VIU37_12345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014796.1"
                     /translation="ATQLYAFLGVFVASGLVLFLPTRGGFRRPDELEAESYEPDEDAA
                     PPSATPTPTPTPDSTSTPTPDPTPTPDPTPDPTPAPTPTP"
     gene            344..565
                     /locus_tag="VIU37_12350"
     CDS             344..565
                     /locus_tag="VIU37_12350"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEY6014797.1"
                     /translation="MIEPGRGWAYAALFSEIGISLLVTTLLGVLVGYWADGQFGTLPI
                     FVIVGFLVGAGAGTVMIYRLVSQFLKTIE"
     gene            637..1689
                     /gene="atpB"
                     /locus_tag="VIU37_12355"
     CDS             637..1689
                     /gene="atpB"
                     /locus_tag="VIU37_12355"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEY6014798.1"
                     /translation="MSSEKPATDVVAPGSEADVGVVPASSSRRGISRWLLLIGAVIVV
                     DIAAFVLFPPFPKGAPGESCSYPTCFIESSLEFPAPASVVDFDPDHAPAASALITFHP
                     SISSTLLTMWIVMALVILASFLMTRRGTLVPGRAQNVFEWFYEFLGDFGMGVAGPAAR
                     PYIPIFVGAFLLIVFDNWIGLVPPVGKVEFLRAPSSDVNITVGMALVSFAIFQGEGFR
                     RLGVRGYLGKFFPFYEFRNGIGAGIIALFVGLIELMLEFVKPVTLSMRLFGNIYGGEV
                     ALGVMTALTVAIIPVALVGLELMLNAIQALIFSVLTLIFIVLAIESHHEEEGHVAEDV
                     LDAAGAAPPHGLQPAN"
     gene            1768..1980
                     /locus_tag="VIU37_12360"
     CDS             1768..1980
                     /locus_tag="VIU37_12360"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEY6014799.1"
                     /translation="MEHIGAGLAALGVFGPGIGIGILAGLSATAIGRNPDAAGQIRGI
                     AIILAAFAEGLGVLAIVVGLLAIFIK"
     gene            2005..>2403
                     /locus_tag="VIU37_12365"
     CDS             2005..>2403
                     /locus_tag="VIU37_12365"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit B"
                     /protein_id="HEY6014800.1"
                     /translation="MELLAVATGVGREVVRLTAADTALFQINLFQVIIAAANFVVFLA
                     LIWTFAFKPVSKMLADRKERIEQGLKDAEQARRDRESAESERMSTLTEARREANDILA
                     RAQKVAQDTREADIAATKEELERLRDRATAE"
BASE COUNT          364 a          860 c          779 g          400 t
ORIGIN      
        1 gcgacgcagc tgtacgcgtt cctcggcgtg ttcgtggcgt cggggctggt gctgttcctg
       61 ccgacccggg gcgggttccg gcgacccgac gagctcgagg ccgaatccta cgaacccgac
      121 gaggacgcgg ccccgccgtc agccacgcct acgccgacac ccactccgga ctcgacatcg
      181 acaccgaccc ccgaccccac gcccaccccg gacccgacgc ccgatccgac cccggcaccc
      241 acgcccacac cttgaccgcg ttccggccgg taccgttccg caaccctcgt ggacgctccc
      301 cggaaggcac ctgctatact cccgctgcct tgtcaggtca gccatgatcg agccgggccg
      361 aggttgggcg tacgccgccc tgttctcgga aatcggcatt tcactcctgg tcacgacgct
      421 gctcggcgtg ctggtcggct actgggccga cggacaattc ggtacccttc cgatcttcgt
      481 gatcgtcggc ttcctcgtcg gcgccggggc cgggacggtg atgatctacc gattggtcag
      541 ccaattcctc aagacgatcg aataacgagc ctcaaaaggc acaactgacg gtcccgagcg
      601 cggcagcaac gccgcgctcc tgtgtgtgga gggagcgtgt cgagcgagaa gcccgcgacc
      661 gacgtggtcg caccgggcag cgaagcggac gtgggcgtcg tgcccgcgtc ctcgagccgt
      721 cgcgggatct cgcgatggct gctgctgatc ggcgcggtga tcgtcgtgga catcgccgcg
      781 ttcgtgctct tcccgccgtt cccgaagggc gctcccggcg agtcgtgctc gtacccgacc
      841 tgcttcatcg agagcagcct ggagttcccg gcgccggcct cggtcgtcga cttcgacccg
      901 gaccacgcgc cggccgccag cgcgctgatc acgttccacc cgagcatcag ctcgaccctc
      961 ctgacgatgt ggatcgtcat ggccctggtg atcctcgcgt ccttcctgat gacccggcgc
     1021 gggacgctcg tcccgggccg tgcgcagaac gtgttcgagt ggttctacga gttcctcggc
     1081 gacttcggca tgggcgtggc cgggccggcg gcacggccgt acatccccat cttcgtcggc
     1141 gccttcctgc tgatcgtgtt cgacaactgg atcgggctcg tgccgccggt gggcaaggtc
     1201 gaattcctcc gggcgccgtc gagtgacgtc aacatcacgg tcgggatggc gctcgtgagc
     1261 ttcgccatct tccagggcga ggggttccgc cggctcggcg tccggggcta cctcggcaag
     1321 ttcttcccgt tctacgagtt ccgcaacggc atcggcgcgg gcatcattgc cctgttcgtc
     1381 ggcctgatcg agctgatgct cgagttcgtc aagccggtca cgctgtccat gcggttgttc
     1441 ggcaacatct acggaggtga ggtcgccctc ggcgtgatga ccgcgctcac ggtcgccatc
     1501 atccccgtcg ccctcgtggg cctcgagctc atgctgaacg ccatccaggc gctcatcttc
     1561 agcgtcctga ccctgatctt tatcgtgctg gccatcgaga gccaccacga ggaagagggc
     1621 cacgtcgccg aggacgtcct cgacgcggcg ggggccgccc caccgcacgg gctccagccc
     1681 gccaactgat cgcgccgcag cgcggtgcac caaccacggt cacagtgaac ccgggccgca
     1741 ggcacgggga gtaggaggaa gtctcgaatg gagcacatcg gcgccggact cgccgctctc
     1801 ggggtgttcg gccccggcat cggcatcggc atcctcgcgg gcctgtccgc cacggccatc
     1861 gggcgcaatc ccgacgccgc cggccagatc cgcggcatcg cgatcatcct cgcggccttc
     1921 gccgaaggac tcggcgtcct ggcgatcgtc gtcggcctgc tcgcgatctt catcaagtag
     1981 ccgggccggc acggagaagc catcgtggag ctactggctg tcgccaccgg cgtcgggcgt
     2041 gaggtcgtcc gcctgaccgc ggccgacacc gccctgttcc agatcaacct gttccaggtg
     2101 atcatcgccg cggccaactt cgtggtcttc ctggcgctga tctggacctt cgcgttcaag
     2161 ccggtgtcga agatgctggc cgaccgcaag gagcggatcg agcaggggct caaggacgcc
     2221 gaacaggcgc gccgggatcg cgagagcgcc gagtccgagc ggatgagcac cctgaccgag
     2281 gctcgccgcg aggcgaacga catcctggca cgagcccaga aggtcgccca ggacacccgc
     2341 gaagccgaca tcgccgcaac gaaggaggag ctcgagcgat tgcgcgaccg cgcgaccgcg
     2401 gag
//
LOCUS       DATDDI010000849         2632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_642777, whole genome shotgun sequence.
ACCESSION   DATDDI010000849 DATDDI010000000
VERSION     DATDDI010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642777"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VIU37_12370"
     CDS             <1..492
                     /locus_tag="VIU37_12370"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014801.1"
                     /translation="STRSAWRIYLKDGVTADGRIIARKVTSYADSGAYSRQTPYALTK
                     HAANAAGPYAIPNVSIDAYCVYTNRQPTSAMRGFGVTMASFALEVQMDRIAETVGLDP
                     WSIRFLNAYRNGDMKPHRKLAEDATLIETMQAAATLVGHELTAEQQAMTSAPRAGSET
                     GGR"
     gene            495..1496
                     /locus_tag="VIU37_12375"
     CDS             495..1496
                     /locus_tag="VIU37_12375"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014802.1"
                     /translation="MAKLRGTGMAAVNYPTGMNLGGDPSQALVHATTSGSFVVTLSAT
                     DLGQGLRTVIGQIAAETLGVAYDQVVVDTADTDTGPHDMGTFASRATHRVGNAVIAAA
                     VEARKALLDVAAEEFEASVDEIEFDGHGNLMVAGVPARSMPVAEVASMAQFKYGRTIA
                     GRGSFMKPRSEVDPETGAMDPDSTEAHACTVAEVEVDTETGEVTVLSIRSAYEVGRQV
                     NPALVQGQITGGAWMGMSHALYETTAPYYPAPDHSPRDFSEYLMPGPLELPEIDCVVL
                     EMPSSNGPYGVKGIGEMTANSHIPAIVNAIYHATGVRIDSLPVTPEKILRGLDARRP"
     gene            1496..1885
                     /locus_tag="VIU37_12380"
     CDS             1496..1885
                     /locus_tag="VIU37_12380"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6014803.1"
                     /translation="MGQITTWDEFPTVEYVPGVFRQAVSGEKTMLTRIVYRGGVVIPD
                     HSHPAEQLMLVVEGRLWAKVGDEEAEVGPGSLLVIPSDWVHAFRQLGDEDVVFYECFA
                     PIRLEYLVGFKGPDASLAMMKRALAAE"
     gene            2049..>2632
                     /locus_tag="VIU37_12385"
     CDS             2049..>2632
                     /locus_tag="VIU37_12385"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY6014804.1"
                     /translation="MGQLDAFSLEGRVALVPGGAGAIGSAMAEALAGAGARVAVADRT
                     CRMCDDVVGRVERVGSEGIGIAADMTVEADCDRMVAETIERFGRIDIVVNAVGGGAGK
                     VLHPAETYPRSDWDWIMELNVRSTLLATQAAARAMIEAGRGGSVLNISSVRANLGINA
                     GYSAYVAAKGAIMMTLTSDSSTRTASRNPCSASWP"
BASE COUNT          431 a          895 c          939 g          367 t
ORIGIN      
        1 tccacccgca gcgcctggcg gatctacctg aaggacgggg tgaccgccga cggccgcatc
       61 atcgcccgca aggtgaccag ctacgccgat tccggcgcgt acagccgcca gacgccctac
      121 gcgctgacga agcacgccgc gaatgcggcc ggcccgtacg ccatcccgaa cgtgtcgatc
      181 gacgcctact gcgtgtacac caaccgccag ccgacgagcg cgatgcgcgg tttcggcgtc
      241 acgatggcct cgttcgcgct ggaggtccag atggacagga tcgccgagac ggtggggctg
      301 gacccgtggt cgatccggtt cctcaacgcc taccgcaacg gcgacatgaa gccccaccgc
      361 aagctcgccg aggacgcgac gttgatcgag acgatgcagg ccgcggccac cctcgtggga
      421 cacgagctga cggccgagca acaggcgatg acgtcggcgc cgcgggccgg cagcgagacg
      481 ggaggccgct agccatggcc aagctgcgcg gcacgggcat ggccgccgtc aactacccga
      541 ccgggatgaa ccttggcggt gacccgtccc aggcgctggt ccacgccacg accagcgggt
      601 cgttcgtggt cacgttgtcg gccacggacc tgggccaggg gctgcgaacg gtgatcgggc
      661 agatcgccgc cgagacgctg ggcgtcgcct acgatcaggt cgtcgtcgac acggccgaca
      721 ccgacaccgg accccacgac atgggcacct tcgccagccg ggccacgcac cgggtcggca
      781 acgcggtcat cgccgccgcg gtcgaggcgc gcaaggcgct gctggacgtg gccgccgagg
      841 agttcgaggc gtcggtcgac gagatcgagt tcgacgggca cggcaacctg atggtcgcgg
      901 gcgtcccggc ccggtccatg ccggtggccg aggtcgcctc gatggcccag ttcaagtacg
      961 gcaggacgat cgccggtcgc ggcagcttca tgaagcccag gagcgaggtc gaccccgaga
     1021 ccggggcgat ggaccccgat tcgaccgaag cccacgcctg cacggtggcc gaggtggagg
     1081 tcgacacgga gacgggcgag gtcaccgtcc tgagcatcag aagcgcctac gaggtcggcc
     1141 gccaggtcaa ccccgcgctg gtccagggac agatcacggg cggtgcctgg atgggcatgt
     1201 cccacgccct gtacgagacc accgcgccgt actacccggc gccggaccac agcccgcgcg
     1261 acttcagcga gtacctgatg cccgggccgc tcgagctgcc cgagatcgac tgcgtcgtgc
     1321 tcgagatgcc gtcgtcgaac ggcccgtacg gggtcaaggg catcggcgag atgacggcga
     1381 actcgcacat ccccgccatc gtcaacgcca tctaccacgc gacgggcgtc cggatcgact
     1441 cgctcccggt cacgcccgag aagatcctgc gtggtctcga cgccaggagg ccctgatggg
     1501 acagatcacg acctgggacg agttcccgac cgtcgaatac gtgcccggcg tcttccgcca
     1561 ggcggtgtcc ggcgagaaga cgatgctgac ccggatcgtc tatcgcggcg gcgtcgtgat
     1621 ccccgatcac agccaccccg ccgagcagct catgctcgtc gtggagggcc ggttgtgggc
     1681 gaaggtcggc gacgaggagg ccgaagtcgg gcccggctcg ctgctggtca tcccgtcgga
     1741 ctgggtccat gcgttccgcc agctcggcga cgaggatgtc gtcttctacg agtgcttcgc
     1801 gccgatccgc ctcgagtacc tggtggggtt caaggggccg gacgcgtcgc tggcgatgat
     1861 gaagcgggcg ctcgcggccg aatagcggac agggtaccgt gagccggtcg cgttgacgct
     1921 cgcgtggtcg gcgactatcc tcgataatcg atcaaatgag acgcggggcc atccccctcg
     1981 ccacggacgc gcgaggctcc gcctgcgggc gccgtgagtc cggtccatcg tctcggcaag
     2041 gagtgaccat gggtcagctg gacgcgttca gcctcgaggg gcgggtggcc ctcgtgccgg
     2101 gtggcgcggg cgccatcggg tccgcgatgg ccgaggccct ggccggcgcc ggcgcgcgcg
     2161 tggcggtcgc cgaccggacc tgccggatgt gcgatgacgt ggtcggacgc gtcgaacgcg
     2221 tcggctcgga ggggatcggc atcgcggcgg acatgacggt cgaggccgac tgcgaccgga
     2281 tggtcgcgga gaccatcgag cgcttcggcc ggatcgacat cgtggtcaac gcggtcggcg
     2341 gcggggccgg caaggtgctc caccccgcag agacgtatcc acgctcggac tgggactgga
     2401 tcatggagct caacgtccgg agcaccctgc tcgccacgca ggcggcggcc cgggcgatga
     2461 tcgaggccgg ccggggcggg agcgtcctca acatctcgtc ggtccgcgcc aacctcggga
     2521 tcaacgcggg gtactcggcc tatgtcgcgg cgaagggcgc catcatgatg acgcttactt
     2581 cggactcttc tacgaggaca gcctcaagga atccctgttc ggcaagctgg cc
//
LOCUS       DATDDI010000850         1985 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_580001, whole genome shotgun sequence.
ACCESSION   DATDDI010000850 DATDDI010000000
VERSION     DATDDI010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580001"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VIU37_12390"
     CDS             complement(<1..735)
                     /locus_tag="VIU37_12390"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEY6014805.1"
                     /translation="MLAPFRGLAPSLSIAVHDALGACVGGTSDEAAPAERQIRPIVAG
                     PLAGGSVVAWGAAASTPLAIATVESLAIALGIAHTVGSGGIADVVAARRIEQELAHGR
                     RLQRSFVSLVAPEVPGYELASHYEAAREVGGDFFDLFRMRRRGRPLSVVIADVSGKGI
                     AAALLMAFSRPLLHAAVDNTTGPAEALERTNRILVQERRSSLFITALCASLSLPTGRL
                     RLANAGHEPPLVIPGDGSAILPVAVEG"
     gene            complement(813..1232)
                     /locus_tag="VIU37_12395"
     CDS             complement(813..1232)
                     /locus_tag="VIU37_12395"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEY6014806.1"
                     /translation="MALETTVEQATGRVPVTVLALDGELDASNFMALIDQARGLYEAG
                     TRHLLLDLSGLQFMASSGLVALHSVVRLIHGEPPPDPEAGWGALHALGQDVSEGSTQA
                     EVQLCGAQPAVERVLARTGLNRLFLSHPDRASAIAGF"
     gene            complement(1233..1679)
                     /locus_tag="VIU37_12400"
     CDS             complement(1233..1679)
                     /locus_tag="VIU37_12400"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6014807.1"
                     /translation="MTPVAAVRSIRIPSDVGRLAEVRELIRSAAAAAGADPGYVGDLV
                     QAVDETVTNAIVHGHAGRPGWVEVRLAREDGRLIVTIEDDAPTFDPTGVPEPDLSVPP
                     ERRRPGGMGVHLARLCVDEISHRPRPGGGNILTLVRKLEPGTKEDR"
     gene            complement(1684..>1985)
                     /locus_tag="VIU37_12405"
     CDS             complement(1684..>1985)
                     /locus_tag="VIU37_12405"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6014808.1"
                     /translation="EIMSTAPAKLFGLYPRKGAIAVGSDADLLIYDPNRKRTITAAHH
                     HMDVDYSCYEGRVVQGASDIVLSRGSVIVRDGQFTGRPGHGRYLKRAPADHVRLG"
BASE COUNT          288 a          705 c          744 g          248 t
ORIGIN      
        1 cccctcgacc gcgaccggca ggatcgctga tccgtcgccg gggatgacca gcggcggctc
       61 gtggccggcg ttggccagac gcagccgacc ggtcgggagc gaaagcgatg cgcacagggc
      121 cgtgatgaac agcgacgagc ggcgttcctg gacgaggatt cggttggtgc gctcgagcgc
      181 ctcggccgga ccggtcgtgt tgtccaccgc ggcatggagc agcggtcgcg agaaggccat
      241 caggagcgcc gccgcgatgc ccttgcccga cacgtcggcg atgaccacgc tcagcggtcg
      301 tccgcgccgg cgcatccgga acaggtcgaa gaagtcgccg cccacctcgc gcgcggcctc
      361 gtagtggctg gccagctcgt agcccggcac ctccggcgcg acgagcgaga cgaagctgcg
      421 ctggagccga cggccgtgcg ccagctcctg ctcgatccgg cgcgcggcga cgacgtcggc
      481 gatcccgcca ctgccgaccg tgtgcgcgat gcccagggcg atggccagcg actcgacggt
      541 cgcgatcgcc agcggggtgg acgcggcggc gccccaggcc acgacactgc cgcccgccag
      601 cggtccagcc acgatcggcc ggatctgccg ctcggccggc gcggcctcgt cggacgtccc
      661 gccgacgcac gcccccaagg catcgtggac ggcgatcgac agcgacggcg cgagcccgcg
      721 gaagggcgcg agcacggctt cgacgccagg gccacccggc ggcagcgaca ctgacaacgg
      781 tacggacgga acgccgcggg cgggtcgcga ccctagaagc ccgcgatcgc cgatgcgcga
      841 tccgggtggc tcaggaacag gcgattgagg ccggtccggg cgagcacccg ctcgacggcg
      901 ggttgcgcgc cgcacagctg gacctcggcc tgggtcgagc cctcgctgac gtcctggccc
      961 aacgcgtgaa gggcgcccca gcccgcctcg ggatccggcg ggggctcgcc gtggatgagg
     1021 cggacgaccg aatggagggc gaccaggccg gagctggcca tgaactgcag cccggacagg
     1081 tcgagcagca ggtgccgggt gccggcctcg tacagcccgc gggcctggtc gatgagcgcc
     1141 atgaagttgg aggcatccag ctcgccgtcg agcgccagca cggtgaccgg cacgcgtccg
     1201 gtggcctgct cgacggtggt ctccagggcc atctagcggt cctccttcgt ccccggttcc
     1261 agcttgcgaa ccagcgtgag tatgttgccg cctccgggcc gcggccgatg gctgatctcg
     1321 tcgacgcaca ggcgggcgag atggacgccc atgccacccg gccggcggcg ctccgggggc
     1381 acgctgaggt cgggctcggg cacgccggtc gggtcgaacg tcggggcgtc gtcctcgatc
     1441 gtcacgatca gccggccgtc ctcgcgagcg agacggacct cgacccagcc ggggcggccg
     1501 gcgtggccgt ggacgatggc gttggtcacg gtttcgtcca cggcctggac gagatcgccg
     1561 acatagcccg gatcagcccc ggcggccgcg gccgccgacc ggatgagctc gcggacttcg
     1621 gccagccggc cgacgtcgga cgggatgcgg atcgaccgga ccgctgccac cggcgtcatc
     1681 gggtcagccg agccgaacgt gatcggcggg cgcccgcttg aggtagcggc cgtgcccggg
     1741 ccgcccggtg aactgcccgt cgcggacgat gaccgacccg cgcgacagga cgatgtcgct
     1801 ggcaccctgc acgacccggc cctcgtagca cgagtagtcg acatccatgt ggtggtgggc
     1861 cgcggtgatc gtccgcttgc ggttcgggtc gtagatgagc aggtcggcat cggagcccac
     1921 ggcgatggcg cccttgcgcg ggtagagccc gaacagcttc gccggcgccg tcgacatgat
     1981 ctcga
//
LOCUS       DATDDI010000851         3531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_122174, whole genome shotgun sequence.
ACCESSION   DATDDI010000851 DATDDI010000000
VERSION     DATDDI010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122174"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2124)
                     /locus_tag="VIU37_12410"
     CDS             complement(<1..2124)
                     /locus_tag="VIU37_12410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014809.1"
                     /translation="MSTKPEGATARWTNRTDRLPRIRRRRMLAIVATVAVLAASIQVG
                     VSVASTPSSGTVDPLMTGMSWQGPDVAATTAGPSDAECTAPAALPDRPFDGHCDDFSL
                     TVGVSADYWASHVGSVTIDVTGGEVAEDYDLYVYDATGTEVASSAQPASLETVTLACP
                     TREAGPYRVRVVYFQTVDDGIDSTPGYDATATFASDAGQCTGQPTGGPAVFHDGTIGF
                     GPSTVVSPSFLGGEPQVTMERRLPQTAAGAVDPNRVFVDWPLSSRSGIGQLYRSTDGG
                     DSFRLLFDRTCAVRSRPNCLTSGGGDTENDVNPVNGNLYFADQEVLANEALTTSFDHG
                     DTFNTQTAVANGTAGTDRQWVATTDNSTTVSGRRIEAILTYHVSPTAYIQGVDSTGLP
                     IAQPVPQLTNVAQSGQPRIDNNAASPGHGWIYYPHAGFSPGGTWVATARVADYDDPAG
                     WQDNQATAADVTSFPWVAIDAGGNAYLTWDNGGQVYYSVSNISDKANDPRVGGRPGTT
                     WSPAVKVSLPSVGSAVLPEVTAGDAGRIAIAYVGTTEFTGIPDDAPDATHWNVYAAIL
                     PDALSATPTVETGLVAHRFIHMGNVCTGGIGCTTNPAADRSLLDMIDLSFDEAGRVGV
                     IYSDNFSSFADVPGGEDEPPFVSFAKQVSGPSILGSVGTVNAPVRTDSSSDAAGDATW
                     PNVSGAANLPALDLRGASIDLENGDL"
     gene            complement(2274..>3531)
                     /locus_tag="VIU37_12415"
     CDS             complement(2274..>3531)
                     /locus_tag="VIU37_12415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014810.1"
                     /translation="YRQRYGTDPRGGSGLAGVSVGRATLLRAALMNSALGDLYEARWN
                     LTILPGGLPTCPPDLDPTGFGVCDFVNLFGTLVGTTTVYEVRNGAADPYVGPLAEGAG
                     KVQVGPAVAALRDGVVVYSTASGSGTAAGTGPRDLQGSWQIGAVAAGATVDQSFVLHS
                     APGAAQAKVTFAFVSGHPSDGTQAIPTSGSGAWSITLPRTTTVKAGADVVVSMRARIP
                     STAPAGIRTGVILVTVAGVTGADGTPGRGQVLRIPVFAAVTLHDTNVARGNVPGPSAA
                     IDTARDIFAKLDTSWPSVAGQPGTGSNADWLVEPVDLASGLGEAVFTAWDTAGLGNTY
                     DLYVYDAAFDLVATSHPFAADGVTDAQANDARGPSTAAAPTRLSLGQPAGGRYYLVLS
                     RAKVGRNTLSAGGDFGSASIRLDEVR"
BASE COUNT          476 a         1194 c         1333 g          528 t
ORIGIN      
        1 gaggtcgccg ttctcgaggt cgatcgaggc gccgcggagg tcgagtgccg gcaggttcgc
       61 cgctcccgac acgttcggcc acgtcgcgtc gccggcggcg tcgctcgacg agtcggtccg
      121 aacgggcgca ttgaccgtgc cgaccgagcc gagaatcgac ggaccgctga cctgcttggc
      181 gaacgacacg aagggcggct cgtcctcgcc gcccggcacg tcggcgaagc tgctgaagtt
      241 gtcgctgtag atgacgccga cccggccggc ctcatcgaac gacaggtcga tcatgtcgag
      301 gagcgaccga tccgcggcgg ggttggtcgt gcagccgatc ccgccggtgc agacgttgcc
      361 catgtggatg aagcgatgcg cgaccagccc ggtctccacg gtcggcgtgg ccgacagggc
      421 gtccggcagg atggcggcgt agacgttcca gtgcgtcgcg tccggcgcgt cgtccgggat
      481 gccggtgaac tcggtcgtgc cgacgtaggc gatggcgatt cgaccggcgt cgccggccgt
      541 cacctcggga aggacggcgc tgccgacgga cggcaggctg accttgacgg cgggcgacca
      601 ggtcgtgccg ggccggccgc cgacgcgcgg gtcgttggcc ttgtccgaga tgttcgagac
      661 gctgtagtag acctgcccgc cgttgtccca ggtcaggtag gcgttgccac cggcgtcgat
      721 ggcgacccac gggaagctcg tgacgtccgc cgcggtggcc tggttgtcct gccatcccgc
      781 gggatcgtcg tagtccgcga cgcgggccgt cgcgacccac gtgccgcccg ggctgaagcc
      841 ggcgtgcggg tagtagatcc agccgtgccc ggggctcgcg gcgttgttgt cgatccgggg
      901 ctgcccgctc tgggcgacgt tggtcagctg cgggaccggc tgggcgatcg gcagaccggt
      961 ggagtcgacg ccctggatgt aggcggtcgg ggagacgtgg taggtcagga tcgcctcgat
     1021 ccggcgaccc gacacggtcg tcgagttgtc cgtcgtggcg acccactggc ggtccgtgcc
     1081 ggcggtgccg ttggcgaccg cggtctgggt gttgaacgtg tcgccgtggt cgaacgaggt
     1141 cgtcagcgcc tcgttggcga gcacctcctg gtcggcgaag tagaggttcc cgttgacggg
     1201 gttgacgtcg ttctcggtgt ctccgccgcc gctggtcagg cagttcggcc ggctgcgaac
     1261 ggcgcacgtc cgatcgaaca ggagccggaa gctgtcgccg ccgtcggtcg agcggtagag
     1321 ctggccgatc ccgctgcgcg agctgagcgg ccagtcgacg aagacgcggt tcgggtcgac
     1381 ggcacctgcc gcggtctgcg gcagccggcg ctccatcgtc acctgcggct cgccgccgag
     1441 gaagctcggc gagaccaccg tcgacggtcc gaagccgatc gtgccgtcgt ggaagaccgc
     1501 cgggccgccc gtcggctggc cggtgcattg gccggcatcg ctcgcgaagg tcgcggtcgc
     1561 gtcgtagccc ggcgtgctgt cgatcccgtc gtcgacggtc tggaagtaga cgacgcggac
     1621 ccggtacggg ccggcctccc gggtggggca ggcgagggtc acggtctcga ggctcgccgg
     1681 ctgcgcggag ctggcgacct cggtacccgt cgcgtcgtag acgtacaggt cgtagtcctc
     1741 ggcgacctcg ccgccggtga cgtcgatcgt gaccgacccg acgtggctgg cccagtagtc
     1801 ggcggacacg ccgacggtca gcgagaagtc gtcgcaatgg ccgtcgaacg gccgatccgg
     1861 aagtgcggcc ggcgccgtgc actccgcgtc ggacggaccg gcggtggtcg cggcgacatc
     1921 cggaccctgc cagctcatgc cggtcatcaa cgggtcgacg gtgccgctcg acggggtcga
     1981 cgcgacactc accccgacct ggatcgaggc ggcgaggacg gcgacggtcg cgacgatcgc
     2041 cagcatgcgc cggcgtctga tccgcggcag tcgatcggtc cggttcgtcc accgggccgt
     2101 ggcgccttca ggcttggtcg acatgggtcc cttcctccac gatgtcacca catagagtgg
     2161 ttctgcccct tggtggaagg ttgatagcac accactgaca ggggtgtcaa tggcgaatcg
     2221 acggatgaag accgatcacc ccggcgtggt gcaggagggg cgtcagacgc gggtcagcgg
     2281 acctcgtcga gccggatcga ggccgatccg aagtcgccgc cggcgctcag ggtgttgcgt
     2341 ccgaccttgg cgcgactgag cacgaggtag tagcgtccgc cggccggctg gcccagtgac
     2401 aggcgcgttg gagcggcggc cgtcgacggt ccgcgcgcgt cgttcgcctg ggcgtcggtg
     2461 acgccgtccg cggcgaaggg atggctggtc gcgaccaggt cgaaggcggc gtcgtacacg
     2521 tacaggtcat aggtgttccc gagcccggcc gtgtcccagg ccgtgaagac cgcctcgcca
     2581 aggccgctcg ccaggtccac cggctcgacg agccagtcgg cgttcgagcc cgtgcccggc
     2641 tggccggcta ccgacggcca gctcgtgtcc agcttggcga agatgtcgcg cgcggtgtcg
     2701 atcgcggcgc tcgggcccgg aacgttgccg cgggcgacgt tggtgtcgtg gagcgtgacg
     2761 gccgcgaaga ccgggatccg cagcacctgg ccgcgccccg gggtgccgtc ggcgccggtg
     2821 acgccggcga ccgtcacgag gatcacgccc gtgcggattc ccgccggtgc ggtcgacggg
     2881 atcctggccc gcatcgacac gacgacgtcc gcgcccgcct tgacggtcgt ggtcctgggc
     2941 agggtgatcg accaggcgcc gctccccgag gtcgggatcg cctgcgtgcc gtcggatgga
     3001 tgccccgaca cgaacgcgaa cgtgaccttg gcctgcgccg cgcctggcgc cgagtggagg
     3061 acgaacgact ggtcgacggt cgccccggcg gccaccgcgc cgatctgcca tgacccctgg
     3121 aggtcgcgcg gacccgtccc cgcggccgtc ccggatcccg atgccgtgct gtagacgacc
     3181 acgccgtccc gaagggcggc cacggccggc ccgacctgga ccttgccggc gccctcggcg
     3241 agcggaccga cgtacgggtc cgcggcaccg tttcgaacct cgtacaccgt cgtcgtcccg
     3301 accagcgtcc cgaacaggtt gacgaagtcg cagaccccga agcccgtcgg gtcgaggtcc
     3361 ggcgggcagg tcggcaggcc cccgggcagg atcgtcaggt tccagcgggc ttcgtagagg
     3421 tcgccgaggg cgctgttcat cagcgccgcg cggaggaggg tggcccgccc cacggacaca
     3481 ccggccagac cggagccgcc gcgcggatcg gtgccgtagc gctggcggta g
//
LOCUS       DATDDI010000852         2194 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_268344, whole genome shotgun sequence.
ACCESSION   DATDDI010000852 DATDDI010000000
VERSION     DATDDI010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268344"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VIU37_12420"
     CDS             <1..525
                     /locus_tag="VIU37_12420"
                     /inference="COORDINATES: protein motif:HMM:NF012500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014811.1"
                     /translation="PARCRRCSTACRPTGGRVASRSSPGRFLVARAGWLVAAVLHARD
                     RGGRQVVLDAGMTELIRPALYGARHAVVALTSLGRPCAGLGAGSVHSADAGTAPTRVE
                     GPICESTDSLGIHDLPPLRRGDLVAIADAGAYGASQSSGYNGRPRPAQVLLDADGRIR
                     LGRRRSTLGPVTAR"
     gene            522..>2194
                     /locus_tag="VIU37_12425"
     CDS             522..>2194
                     /locus_tag="VIU37_12425"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF006396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HEY6014812.1"
                     /translation="MTADRLATSSERDRFLARLATGPLLADGAMGTLLYSRGIPQRAN
                     LDELVATRPEIIGAIHREYLEAGAELIETATFGANRVRLAAHGLGDRAGALNRRGAQL
                     AREARDVVGRDAWVGGSIGPLGAPTRELLRLGEPAVRAAVREQLDGLLEGGVDLFVFE
                     TFSLLDHLLIALDEARRTASLPIVAQLTYGEELQLPDGTTPLAAAEALAAAGADVIGV
                     NCGGGPEACVEALEAMGATEPGAGSPYPRRSIMPNAGLPQRIEGQFVYAASPEYLAGM
                     VPRFVAAGGTLLGGCCGTTPLHVAAMRRALDGRTTPAAEPAAETAAILPARVRPVSAV
                     PTDAALEAPPATGLARALADRRFVISVEIDPPRSVRIDRTIEAARLLKAAGVDVVNVS
                     DSAMARVRMGALAVAFGIQHDLDLECVVHVTTRDRNLMALESELLGAHALGVRDILAL
                     TGDPPRVGDYPAGTGVWDVDSIGLVEILARLNRGEDAAGSPIGQPAAFTIACALDPTA
                     ADASTEWDRLERKLAAGAHLIMTQPLYDEDQVEAMLIEADRRFGPRGFPV"
BASE COUNT          262 a          840 c          813 g          279 t
ORIGIN      
        1 ccggcgaggt gccggcgctg ctcgacggca tgccgcccga ccggcggccg ggtcgcctcg
       61 cgatcgagcc cggggcggtt cctggtggcg cgcgccggct ggctcgtcgc cgccgtcctc
      121 catgcgcgcg atcgcggcgg ccgccaggtc gtcctcgatg ccgggatgac cgagctgatc
      181 cggccggccc tgtacggggc gcgccacgcc gtggtcgcgc tgacctcgct cggacggccg
      241 tgcgccggcc tgggcgccgg aagcgtgcat tccgccgacg cgggcacggc gcccacccgc
      301 gtcgaggggc cgatctgcga gtccaccgat tcgctcggga tccacgacct cccgccgttg
      361 cggcgcggcg acctggtggc gatcgccgac gccggggcct acggcgcctc gcaatcgtcc
      421 ggatacaacg ggcgcccgcg acccgcccag gtcctgctcg acgccgacgg gcgaatccga
      481 ctgggacggc gacgcagcac cctcgggccg gtgactgccc gatgacggcc gaccggctcg
      541 cgacgtcgag cgaacgcgac cgcttcctgg cccggctggc gaccggaccg ctcctggcgg
      601 acggcgcgat gggcacgctg ctctactcgc gcgggatccc gcaacgagcg aacctcgacg
      661 agctcgtcgc cacccgcccg gagatcatcg gggcgatcca ccgcgagtac ctcgaggccg
      721 gcgccgagct gatcgagacg gcgaccttcg gcgccaaccg ggtccgactc gccgcgcatg
      781 gcctgggcga ccgggcggga gcgctcaacc ggcgcggcgc gcagctggcc cgtgaggccc
      841 gcgacgtggt gggccgcgac gcctgggtgg gcggctcgat cggtccgctc ggtgccccga
      901 cccgggagct gctccggctg ggcgagccgg cggtcagggc ggcggtccgc gagcagctcg
      961 acgggttgct cgagggcggc gtggacctgt tcgtgttcga gaccttctcg ctgctcgacc
     1021 acctcctgat cgcgctcgac gaggcccgcc ggacggcgag cctgccgatc gtcgcccagc
     1081 tcacgtacgg cgaggagctg cagctgccgg acgggaccac gccgctcgcg gccgccgagg
     1141 cgctcgccgc ggccggcgcc gacgtgatcg gggtcaactg cggcggcggc ccggaggcct
     1201 gcgtcgaggc gctcgaggcg atgggcgcca ccgagcccgg cgcgggttcg ccctacccgc
     1261 gccgttcgat catgcccaac gcgggactac cccagcggat cgaggggcag ttcgtctacg
     1321 cggccagccc cgagtacctg gccgggatgg tgccgcgctt cgtggccgcc ggcgggacgc
     1381 tgctgggcgg ctgctgcggg acgacgcccc tgcacgtcgc cgcgatgcgc cgggcgctcg
     1441 acggacgcac gacgccggcc gccgagccgg ccgccgagac ggccgccatc ctgcccgccc
     1501 gagttcgccc cgtctcggcc gtgcccaccg atgccgcgct cgaggcgccg ccggccacgg
     1561 gtcttgcccg tgccctggca gaccggcgat tcgtgatctc ggtcgagatc gacccgccgc
     1621 gctccgtgcg catcgaccgc acgatcgagg cggcgcgcct gctcaaggcg gccggggtcg
     1681 acgtcgtcaa cgtcagcgat tcggcgatgg ctcgcgtccg gatgggcgcc ctggccgtcg
     1741 cattcgggat ccagcacgac ctcgacctcg agtgcgtcgt ccacgtcacg acgcgcgacc
     1801 ggaacctgat ggccctcgag tcggagctgc tcggcgccca cgcactcggc gtgcgcgaca
     1861 tcctcgccct gacgggcgat ccaccgcggg tgggcgacta cccggccggg accggcgtct
     1921 gggacgtcga ctcgatcggg ctggtcgaga tcctggcccg gctcaaccgc ggcgaggacg
     1981 ccgcgggcag cccgatcggc cagcccgccg cgttcacgat cgcctgcgcg ctcgatccga
     2041 ccgccgcgga cgcctccacg gaatgggatc ggctggagcg caagctggcg gccggcgccc
     2101 acctgatcat gacccagccg ctctacgacg aggaccaggt ggaggcgatg ctgatcgagg
     2161 cggatcgtcg cttcggtccg cgtggcttcc ccgt
//
LOCUS       DATDDI010000853         3141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_60024, whole genome shotgun sequence.
ACCESSION   DATDDI010000853 DATDDI010000000
VERSION     DATDDI010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60024"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..831
                     /locus_tag="VIU37_12430"
     CDS             172..831
                     /locus_tag="VIU37_12430"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6014813.1"
                     /translation="MDSSPLRVVIAEDSALIREGIARLIQESGGTVVAKVGDGPSFVQ
                     AVVEHLPDVSVVDVRMPPTQRDEGLRAAIEARRRVPGTPVLVLSQYVERQYATELLAD
                     RAGGVGYLLKDRVGDVREFMEALRRVARGGTALDPEVVAQLMVRQRGDDPLSTLTPRE
                     REVLAAMAEGRTNVGIATLLGITEGATEKHISSIFGKLELPDTQNDHRRVLAVLTYLG
                     S"
     gene            complement(816..2282)
                     /locus_tag="VIU37_12435"
     CDS             complement(816..2282)
                     /locus_tag="VIU37_12435"
                     /inference="COORDINATES: protein motif:HMM:NF025168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing protein"
                     /protein_id="HEY6014814.1"
                     /translation="MIGGAVLIVGLLLVLAGLASARIPGEATFASSGISLAPEADGGD
                     AAGALSLARRARDPIRAFLLSPIHPATWYAVAAILVGFFVGVLAFGFLVSLASAGFAS
                     LVAGIGVVFIGAVIEGSRRVARIERRRVSFGSSQRLLAHPYRPLRGGLVAVVKAEFAD
                     ENRWRDVLYVAVNFPLSIIEFTVVAMPWVISLWLLTAPIWHDAVPGSTLPGYFGPLGD
                     RDAAASVLRVLLGAMLLPVAASISQLVLALHRGVVSALLCTSESRELRRQVETLKESR
                     SAVIDVEASELHRIERDLHDGAQQRLVMLTIDLGLASERIDSDPGAAKQLVLEGQEQA
                     RQALAELRDLVRGIAPSILLDRGLVPAISSITARGPVPTSVMSDLPPGERLPAAVERA
                     AYFVAAEALANVTKHSGATHCEVRCRREGQRLVIEVWDDGVGGASAEPGGGLAGLAGR
                     VEGVDGTFSLSSPVGGPTLVRAELPISFWVAPGAQEPR"
     gene            complement(2279..2779)
                     /locus_tag="VIU37_12440"
     CDS             complement(2279..2779)
                     /locus_tag="VIU37_12440"
                     /inference="COORDINATES: protein motif:HMM:NF015957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0080135 - regulation of cellular response
                     to stress [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEY6014815.1"
                     /translation="MQVNRRLYRCRHDQRIAGVASGVAEYVDADPTIVRILWVLSIFV
                     GGFGLLLYIAMALIVPLEPEQGFIGTGSQADAPTDEMTGEAAVAGPTGWQQPPSGHRH
                     ASHRGQGRGTLFVGMALVLFGALALVDAYLPAWADHGRFLWPAFILGIGAVLVASAVR
                     REPTKP"
     gene            complement(2770..>3141)
                     /locus_tag="VIU37_12445"
     CDS             complement(2770..>3141)
                     /locus_tag="VIU37_12445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014816.1"
                     /translation="GAQLGRLDVVTNAAETIVDVSGATLSGMSGAVNAGLLSVHLPSG
                     SDVSGSLTVNAGALQVCTPPGLGLRVTHGGVLSGIKVNGLQVTGSDWQSPDYASATHR
                     ADLNVIVNVGAVEINPIGGCK"
BASE COUNT          505 a         1089 c         1158 g          389 t
ORIGIN      
        1 ggccggcgcc cggcgatcgg gtcggcgccg gagagtgcgg cggcggaacg tccacgacac
       61 ctccttcgcc ggtagtgtcg cggcgcgggc ctgcgcgaac aagatcggaa ccgtgccgtg
      121 gactcgccgg gtcgtcctgc atcgcccgac gaggacgcgc atgatcgacg cgtggacagc
      181 tcgccgctgc gcgtggtcat cgccgaggac tcggccctca tccgcgaggg gatcgcccgc
      241 ctgatccagg aatcgggcgg cacggtcgtc gccaaggtcg gcgacgggcc gtccttcgtc
      301 caggcggtcg tcgagcacct gccggacgtc tcggtggtgg acgtccggat gccaccgacc
      361 cagcgtgacg agggcctgcg ggcggcgatc gaggcgcgcc gccgcgtgcc cgggacgccc
      421 gtcctcgtgc tcagccagta cgtcgagcgc cagtacgcga cggagctcct ggcggatcgg
      481 gcgggcgggg tcggctacct gctcaaggac cgggtcgggg acgtccgtga gttcatggaa
      541 gcactgcggc gggtcgcccg cggtggcacc gccctcgatc ccgaggtggt tgcccagctg
      601 atggtccgcc agcgaggcga cgacccactc tccacgctga cgccgcggga gcgcgaggtg
      661 ctcgccgcga tggccgaggg ccgcacgaac gtcgggatcg ccaccctcct cgggatcacc
      721 gaaggtgcga ccgagaagca catcagcagc atcttcggca agctcgagct gccggacacg
      781 cagaacgatc atcgccgcgt cctggcggtc ctgacctacc tcggttcctg agctcccggg
      841 gctacccaga aggagatcgg cagctcggca cgcacgaggg tggggccccc gaccgggctc
      901 gacaggctga acgtgccgtc gacgccctcg acccggcccg ccagcccggc caggccgcca
      961 cccggctcgg cgctggcgcc gccgacgccg tcgtcccaga cctcgatgac cagccgctgg
     1021 ccctcccggc ggcagcggac ctcgcaatgt gttgcgccac tgtgcttggt cacgttggcg
     1081 agggcctcgg cggccacgaa atacgcggcc cgctcgacgg ccgcgggcag gcgttcgccg
     1141 ggcggcaggt cgctcatgac cgaggtgggg acgggtccgc gcgcggtgat cgagctgatg
     1201 gccgggacga ggccgcggtc gaggaggatc gacggggcga tgccgcggac gaggtcgcgc
     1261 aactcggcca acgcctggcg ggcctgctcc tgtccttcga ggaccagctg cttcgcggcc
     1321 cccgggtcgc tgtcgatgcg ctcgctggcg agaccgaggt cgatcgtcag catgaccagc
     1381 cgttgctggg ccccgtcgtg aagatcgcgc tcgatccggt gcagctcgct cgcctcgacg
     1441 tcgatgaccg ccgagcggct ctccttgagg gtctcgacct ggcggcgaag ctcgcggctc
     1501 tcggaggtgc agaggagcgc ggagaccacg ccacggtgga gcgcgaggac gagctgcgag
     1561 atggaagcgg caaccgggag cagcatggcc ccgaggagca cacgcaggac gctggcagcg
     1621 gcgtcgcgat cgcccagcgg cccgaagtag cccgggaggg ttgaaccggg aaccgcgtcg
     1681 tgccagatcg gcgccgtcag cagccacagc gagatgaccc agggcatggc caccacggtg
     1741 aactcgatga tcgagagcgg gaagttgacc gccacgtaga gcacgtcgcg ccagcggttc
     1801 tcgtcggcga actccgcctt gacgaccgcg accagcccgc cccggagcgg gcggtacggg
     1861 tgggcgagca ggcgctgcga cgatccgaac gagacacgcc gtcgctcgat ccgggcaacc
     1921 cgccgcgatc cctcgatgac ggcgccgatg aacacgaccc cgatcccggc gacgagcgac
     1981 gcgaagccgg ccgaggcgag cgagacgagg aacccgaagg cgagaacgcc gacgaagaac
     2041 ccgaccagga tggccgcgac cgcataccag gtcgccggat ggatggggga gaggaggaag
     2101 gcgcggatcg ggtcgcgcgc cctgcgggcc aggctcaagg cgcccgccgc gtcgccgccg
     2161 tcagcctccg gggcaagcga gatccccgac gaagcgaacg tcgcttcgcc ggggatccgg
     2221 gctgacgcca gcccggccag gacgaggagc agtccgacga tcaggactgc gccaccgatc
     2281 acggcttggt cggctcgcgt cgcacggcgc tggcgaccag gacggcgccg ataccgagga
     2341 tgaaggccgg ccacaggaag cggccgtgat ccgcccaggc cggcaggtac gcgtcgacca
     2401 gggcgagcgc accgaacagc accagggcca tcccgacgaa cagcgtgccg cgcccctggc
     2461 cgcgatggct cgcgtggcgg tggcctgacg gcggctgctg ccagcccgtc ggaccggcga
     2521 ccgcggcctc gccggtcatc tcatcggtcg gggcatcggc ctgtgaaccg gttccgatga
     2581 agccctgctc gggctcgagc ggcacgatca gggccatggc gatgtacagg aggaggccga
     2641 agccgccgac gaagatggac aggacccaca ggatccggac gatggtcggg tcggcgtcga
     2701 cgtattcggc gacgcccgac gccacaccgg cgatgcgctg gtcgtggcgg caacgataga
     2761 gacggcggtt cacttgcatc ctccgatcgg attgatctcg acggcaccga cattgacgat
     2821 cacgttgagg tcggcacggt gcgtggccga cgcgtagtcc gggctctgcc agtcactgcc
     2881 ggtcacctgc agcccgttga ccttgatccc gctcagcacg ccgccgtggg tcactcgcag
     2941 accgaggcct ggcggcgtgc agacctggag cgctccggcg ttgaccgtga gcgagcccga
     3001 gacgtcgctg cccgacggca ggtggaccga caggagtccg gcgttgacgg caccggacat
     3061 gccggacaga gtggcgccgg agacatccac gatcgtctcg gcggcgttcg tcacgacgtc
     3121 gagccggccg agctgggccc c
//
LOCUS       DATDDI010000854         2208 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_330548, whole genome shotgun sequence.
ACCESSION   DATDDI010000854 DATDDI010000000
VERSION     DATDDI010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330548"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..731)
                     /locus_tag="VIU37_12450"
     CDS             complement(<1..731)
                     /locus_tag="VIU37_12450"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014817.1"
                     /translation="MTLATDLDLLAINTIRTLSIDAVQKANSGHPGAPMGAAPMAYVL
                     WTRFLRHAPTHPDWPDRDRFVLSAGHASMLLYSLLHLTGYAVSLEDLESFRQWGSITP
                     GHPEYGLTPGVEATTGPLGQGLANAVGMAIAERRLAAEYNRPNHAIVDHWTYVIASDG
                     DLQEGIASEAASLAGHLRLEKLVVLYDDNHVQLDGPTSMAWSEDVPARFEAYGWHTQR
                     VEDGNDVAAIEAAIERARSDGRPSL"
     gene            811..1758
                     /locus_tag="VIU37_12455"
     CDS             811..1758
                     /locus_tag="VIU37_12455"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEY6014818.1"
                     /translation="MPTIRRPGRARGPRIVVLGDLVLDVVLAPARQLAAGSDVPGRVA
                     MVQGGSAANTARWAARIGARSSLISAVGRDATGRALVAALRADGVVVHVSRIAGARTG
                     RIGVLVAPGGERSFVQDRGAAELLAADELRASWFSGADVVHLPIYSLLGAQGAAGRRA
                     LELGRAAGAAVSVDLASIGPLLAGGRPAARALVRDAGPDVLFATAAEAEALLGLGVLD
                     GLLELASIVVVKRGPKGATVLARDGAGTLRFEAATEALSATDTTGAGDAFDAGFLVGW
                     LTARAAGRSISTSLHRAALAGHRAAARQLSTPRPELALG"
     gene            complement(1774..>2208)
                     /locus_tag="VIU37_12460"
     CDS             complement(1774..>2208)
                     /locus_tag="VIU37_12460"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY6014819.1"
                     /translation="SYGGFMVNWLVGTTDRFRAAVSENGVTNQISGWANSDSGPEYDR
                     ASLIGDPFTPAGVERLWRQSPLRHVAAIRTPLLMFQAEADLRCPPQDNEQLFIALRHL
                     GRTVEYVLYPDESHVYSSSGRPDRRIDRMTRMLDWFDRYLRA"
BASE COUNT          267 a          770 c          854 g          317 t
ORIGIN      
        1 atcaggctcg ggcggccgtc ggaccgggct cgctcgatgg cggcctcgat ggcggcgacg
       61 tcgttgccgt cctcgacccg ctgggtatgc cagccgtacg cctcgaagcg ggccggcacg
      121 tcctcggacc aggccatcga cgtcggcccg tcgagctgga cgtggttgtc gtcgtagagg
      181 accacgagct tctcgaggcg caggtggccg gcgaggctgg cggcctcgga cgcgatcccc
      241 tcctggagat cgccgtccga cgcgatgacg taggtccagt ggtcgacgat cgcgtggttc
      301 ggacggttgt actcggccgc caggcggcgc tcggcgatgg ccatcccgac cgcgttcgcc
      361 agcccctgcc cgagcggacc ggtggtcgcc tccacgcccg gcgtgaggcc gtactcgggg
      421 tggcccggcg tgatgctgcc ccactggcgg aacgactcga ggtcctcgag cgacacggcg
      481 tacccggtca ggtggagcag cgagtagagg agcatcgagg cgtgcccggc cgacagcacg
      541 aagcggtccc gatcgggcca gtccgggtgc gtgggtgcgt ggcggaggaa ccgcgtccac
      601 aggacgtagg ccatcggcgc ggcgcccatc ggcgccccgg ggtgacccga gttcgccttc
      661 tggacggcgt cgatcgagag cgtccgaatc gtgttgatgg cgagcagatc gaggtccgtg
      721 gcgagggtca tgcgaacgac tccggatgcg gtgccgaatg ggcagggatg ggtgtcacat
      781 tgtaggcgcg ggtcgggcta tcctccgcgg atgcccacga tccgccgccc gggacgagcg
      841 cggggaccga ggatcgtcgt cctcggggac ctcgtcctcg acgtcgtcct cgcccccgcg
      901 cgacagctgg ccgccggcag cgacgttcct gggcgcgtgg cgatggtcca gggcggctcg
      961 gcggcgaaca ccgcgcgctg ggcggcccgg atcggggcac gctccagcct gatctccgcg
     1021 gtcgggcgcg atgcgaccgg ccgcgcgctc gtcgcggccc tccgggccga tggggtggtc
     1081 gtccacgtct cccggatcgc cggcgcgcgg accgggcgga tcggcgtgct cgtggccccg
     1141 ggtggcgaac ggagcttcgt ccaggaccgc ggggcggccg agctgctggc ggccgatgag
     1201 cttcgcgcga gctggttctc cggcgccgac gtcgtccacc tgccgatcta ttcgttgctc
     1261 ggcgcgcagg gcgcggccgg ccgtcgcgcg ctggagctcg gccgggcggc gggtgcagcc
     1321 gtgagcgtgg atctcgcctc gatcggtccg ttgctggccg gcgggcggcc ggccgcccgg
     1381 gcactcgtca gggacgcggg gccggacgtc ctgttcgcga ccgccgccga ggccgaggcc
     1441 ctgctcgggc tcggcgtgct cgacggcctg ctcgagctgg cctccatcgt ggtcgtcaag
     1501 cggggcccga agggcgccac ggtgctggcg cgcgacggcg ccggcacgct ccgcttcgag
     1561 gccgcgaccg aggcgctcag cgccaccgac acgaccggcg ccggggacgc cttcgacgcc
     1621 gggttcctgg tcggctggct gaccgcgcgg gcggccggcc ggtcgatctc cacgtcgctc
     1681 catcgcgcgg ccctggccgg tcaccgggcg gcggcccgcc agctgtcgac accgcgtccg
     1741 gagctggccc tcggataggg ctcgcggcag cggtcaggcg cggaggtagc ggtcgaacca
     1801 gtcgagcatc cgggtcatcc ggtcgatccg gcgatccggc cgtccggacg acgagtagac
     1861 gtgcgattcg tcggggtaca ggacgtactc cacggtgcgc ccgagatggc gcagcgcgat
     1921 gaacagctgc tcgttgtcct gcggcgggca gcgcaggtcg gcctcggcct ggaacatcag
     1981 cagcggggtc cggatggcgg cgacgtgccg aagcggcgac tggcgccaca ggcgttcgac
     2041 ccctgccggc gtgaacgggt cgccgatcag gctcgcccgg tcgtactcgg ggcccgagtc
     2101 cgagttcgcc cagcccgaga tctggttcgt gacgccgttc tccgagacgg ctgcccggaa
     2161 ccggtcggtg gtccccacga gccagttcac catgaacccg ccgtagct
//
LOCUS       DATDDI010000855         3693 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_705305, whole genome shotgun sequence.
ACCESSION   DATDDI010000855 DATDDI010000000
VERSION     DATDDI010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3693
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_705305"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1529
                     /gene="zwf"
                     /locus_tag="VIU37_12465"
     CDS             <1..1529
                     /gene="zwf"
                     /locus_tag="VIU37_12465"
                     /inference="COORDINATES: protein motif:HMM:TIGR00871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEY6014820.1"
                     /translation="PAENVLREGLRLERVPDPSVLVLFGGTGDLAHRKVIPALYQLWR
                     TNLLPHEFVLLAIGRRPYDDESFRKDIRASLDQFSRVLPVDEEAWASFAEQICYQHLD
                     FADPTGFDGLTARLDELDRGRGTRGNRLFYLATQPSQFAEIAAQLGRAGLDHEHHDGG
                     WRRIVVEKPFGHDAESAKRLNRELGKVFRESQVYRIDHYLGKETVRNLLVFRFGNGIF
                     EPLWNRRYVDNVQITVAESIGIESRGAFYEETGASRDVLQNHLLQLVSLIAMEPPARF
                     EADALRDEKVKVLRAITTTPAEAGADVVRGQYGPGWVAATEVPGYRQEKDVDAASETE
                     TFVAARLMIDDWRWSGVPFYVRTGKRLPKRATEIAIQYREVPHRLFKDEGVEPDANLL
                     AIRIQPDEGIMLRFGAKVPGLGLDVRSVTMDFTYGSAFSVDSPDAYETLILDALQGDA
                     SLFTRADEVEEAWSIVDPIVEAWADAPAPDFPNYEAGSWGPAAADELLAREGRRWRRI
                     "
     gene            1540..2811
                     /locus_tag="VIU37_12470"
     CDS             1540..2811
                     /locus_tag="VIU37_12470"
                     /inference="COORDINATES: protein motif:HMM:NF042449.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase assembly
                     protein OpcA"
                     /protein_id="HEY6014821.1"
                     /translation="MITVAPVKLGEPALRWSARAHSIAEIESELARIWASQDLTADMN
                     GEPGRHVSARTSVMNLVVVARRPEVAERCAATIQALTGRHPSRTIVIQSADPDGPSWL
                     DARVEAHCVLPREDAPETCAETIHLTCGGESGLHLAAIATPLIIHDLPVTIWWPGEPP
                     LTTRAARDLFATADRLVVDGSRWSGDGLTRLRELADLQASTRLAISDFALVRQSRWRE
                     AIASIFDDPDFLPYLRYLRRIAVTYGTHDETCAPGSANLVKPIYHVGWMASRLGLSVV
                     RPLAVVGGHGPAAGAATRPVRTGPVRAISGKPVTGRGFAATLTDGRTEVAVLARPIVS
                     PMPSGTTLRVELRADRRGSELRADVTAEAETVHVRVWQDGVEAWDRRFRAPRRNDVDL
                     LAEAIEAGRRDPVAVDALRSAAELIGDRAEA"
     gene            2813..3619
                     /locus_tag="VIU37_12475"
     CDS             2813..3619
                     /locus_tag="VIU37_12475"
                     /inference="COORDINATES: protein motif:HMM:NF013356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEY6014822.1"
                     /translation="MGAEPELVVVDGPDEAASTAAERIATVLADATARRGRADWATTG
                     GSSVVGIYRRLVAAPLRDAVPWPAVHVWWGDDRFVPRDHPLSNVKPLDDILLGIGLTE
                     EGVAGGEAPGVPLAVEHLHPFRTTEAIGESRGAAWCAADLAKELAGAHLPMAGSSPIF
                     DLLLLGVGADGHLLSVFPGSAALGAGELALAIPAPGHIEPHVERVTLNPAVVGAARQV
                     LVVATGASKAPVLREVFGETHDPARWPAQLARRTGATWILDIAAAADIPR"
BASE COUNT          498 a         1358 c         1322 g          515 t
ORIGIN      
        1 gaccggcgga gaacgtgctc cgcgagggcc tccggctcga acgtgtgccg gacccgtccg
       61 tcctggtgct gttcggcggc acgggcgacc ttgcccatcg gaaggtcatc ccggccctct
      121 accagctgtg gcggaccaac ctgctgcccc acgagttcgt cctgctggcg atcgggcggc
      181 gcccctacga cgacgagtcg ttccgcaagg acatccgcgc gtcgctcgac cagttcagcc
      241 gtgtcctccc cgtcgacgag gaggcctggg cgtcgttcgc cgagcagatc tgctaccagc
      301 acctggactt cgccgacccg accggcttcg acggcctgac cgcgcgcctg gacgagctcg
      361 accgcgggcg cgggactcgc ggcaaccggc tcttctatct cgcgacccag ccgtcgcagt
      421 tcgccgagat cgccgcccag ctcggccgtg ccgggctcga ccacgagcac cacgacggcg
      481 gctggcgacg gatcgtcgtc gagaagccgt tcggccacga cgccgaatcc gccaagcggc
      541 tcaaccgcga gctcggcaag gtctttcgcg agtcgcaggt ctatcgcatc gaccactacc
      601 tgggcaagga gacggtccgc aacctgctgg tcttccggtt cggcaacggg atcttcgagc
      661 cgctctggaa tcgacgctac gtcgacaacg tccagatcac ggtggccgag tcgatcggga
      721 tcgagagccg cggcgccttc tacgaggaga ccggcgcctc gcgtgacgtg ctccagaacc
      781 acctgctcca gctggtcagc ctgatcgcca tggagccgcc ggcacggttc gaggccgacg
      841 ccctgcgcga cgagaaggtc aaggtcctgc gcgccatcac cacgacgccg gcggaggccg
      901 gggcggacgt ggtgcgcggt cagtacggac cgggctgggt ggccgcgacc gaggtccccg
      961 gctaccgcca ggagaaggac gtggacgcgg cctccgagac cgagaccttc gtggcggccc
     1021 ggctgatgat cgacgactgg cgctggtccg gggtcccgtt ctacgtccgg accggcaagc
     1081 ggctgcccaa gcgggccacc gagatcgcga tccagtaccg ggaggtgccg catcgcctgt
     1141 tcaaggacga gggtgtcgag ccggacgcca acctgctggc gatccggatc cagccggacg
     1201 aggggatcat gctgagattc ggggccaagg tcccggggct cggcctggac gtccgctcgg
     1261 tcacgatgga cttcacctac ggctcggcgt tcagcgtgga ctcgcccgac gcctacgaga
     1321 cgctgatcct cgacgcgctc cagggtgacg cgtcgctgtt cacgcgcgcc gacgaggtcg
     1381 aggaggcctg gagcatcgtc gacccgatcg tcgaggcctg ggccgacgcg cctgcaccgg
     1441 acttccccaa ctacgaggcc ggatcgtggg gcccggcggc cgccgacgag ctgctggcgc
     1501 gcgagggccg gcgctggcgt cggatctgag gacgctcccg tgatcacggt cgcgccggtc
     1561 aagctcggtg agcccgcgct gcgctggtcg gcgcgcgccc acagcatcgc cgagatcgag
     1621 agcgagctgg ccaggatctg ggcgagccag gacctgaccg ccgacatgaa cggcgagccg
     1681 ggccgccatg tctccgcccg gaccagcgtg atgaatttgg tcgtcgtggc ccgtcgtccc
     1741 gaggtcgccg agcgctgcgc cgcgaccatc caggcgctca ccggccggca cccgtcccgg
     1801 accatcgtca tccagtcggc ggaccccgac ggcccgtcgt ggctggatgc gcgcgtggag
     1861 gcgcattgcg tgctgccgcg cgaggacgcc ccggagacct gcgccgagac catccacctg
     1921 acctgcggcg gcgaatccgg gctccacctg gcggccatcg cgacgccgct gatcatccac
     1981 gacctgccgg tgacgatctg gtggccgggc gagccaccgc tcacgacccg ggccgcccgc
     2041 gacctgttcg ccaccgccga ccggctcgtg gtcgacgggt cgaggtggtc cggcgacggc
     2101 ctgaccaggc tgcgcgagct ggcggacctg caggcgtcga cgcgcctggc catcagcgat
     2161 ttcgcgctcg tccgccagtc ccgctggcgc gaggcgatcg cgtccatctt cgacgacccg
     2221 gacttcctgc cctacctgcg ctacctccgg cggatcgccg tcacctacgg gacgcatgac
     2281 gagacgtgcg cgccgggctc ggcgaacctg gtcaagccga tctaccacgt gggctggatg
     2341 gcctcgcggc tcggtctgtc ggtcgtcagg ccgctggccg tcgtgggcgg ccacgggccg
     2401 gcggcaggcg ccgccacccg gccggtccga accggtccgg tccgggcgat cagcggcaag
     2461 ccggtcaccg gccggggctt cgccgcgacg ctgaccgacg ggcggaccga ggtggccgtg
     2521 ctggcgcgcc cgatcgtctc gcccatgccg tccgggacga cgctccgggt cgaattgcgg
     2581 gccgaccggc ggggatccga gctccgggcc gacgtgacgg ccgaggccga gaccgtccac
     2641 gtccgcgtct ggcaggacgg cgtggaggcc tgggatcgac gcttccgggc cccgcggcgg
     2701 aatgacgtcg acctgctcgc cgaggcgatc gaggccggcc gccgggatcc cgtcgcggtc
     2761 gacgcgctgc gctccgcggc cgagctcatc ggcgaccggg cggaggcctg acgtgggggc
     2821 cgaacccgag ctcgtggtcg tcgacggtcc cgacgaggcc gcgtccaccg cggcagagcg
     2881 gatcgccaca gtgctcgcgg acgcgacggc gcggcgcggt cgagcggact gggcgacgac
     2941 gggtggctcg tcggtcgtcg ggatctatcg ccggctcgtc gcagcaccgt tgcgcgacgc
     3001 cgttccgtgg ccggcggtcc acgtctggtg gggcgacgac cgcttcgtcc cgcgcgatca
     3061 tcccctgtcg aacgtcaagc cactcgacga catcctgctc ggcatcggcc tgaccgagga
     3121 gggcgtggcc ggcggagagg caccgggcgt cccgctggcg gtggagcacc tccacccgtt
     3181 ccggaccacc gaggcgatcg gcgaatcgcg tggcgcggcg tggtgcgcgg ccgacctggc
     3241 gaaggagctc gccggcgcgc accttcccat ggcgggatcc tcgccgatct tcgacctgct
     3301 cctgctcggc gtgggcgccg acggccacct gttgtcggtc ttccccggct cggcggcact
     3361 gggcgccggc gagctggccc tggccatccc ggcgcccggt cacatcgagc cacacgtcga
     3421 gcgggtcacg ctcaatccgg cggtcgtcgg cgcagcgcgc caggtgctgg tggtcgccac
     3481 cggtgcctcg aaggcgccgg tcctccgcga ggtcttcggc gagacccacg atcctgcccg
     3541 ctggccggcc cagctcgccc gccgcaccgg ggccacctgg atcctcgaca tcgcggccgc
     3601 ggcggacatc ccgcgctgag cggctggccc gatccggtcc cctcgcgacg ggtcgcctcg
     3661 gcggacggaa cgtccatcgc cgtcttcacg acc
//
LOCUS       DATDDI010000856         2797 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_746507, whole genome shotgun sequence.
ACCESSION   DATDDI010000856 DATDDI010000000
VERSION     DATDDI010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746507"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VIU37_12480"
     CDS             <1..402
                     /locus_tag="VIU37_12480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014823.1"
                     /translation="ESGIRYFPFPGRIVGHPSVLEGSVDEIAASAAALTAHEGVHGLD
                     LLAYRHADPVEPIIDAVVRASAGPVVIAGSIDSAERIAAVTRLGAWGFTIGGAVFEFA
                     LPAGHTLQAQVEWVLEAAARAAEDATGGSSR"
     gene            399..2111
                     /locus_tag="VIU37_12485"
     CDS             399..2111
                     /locus_tag="VIU37_12485"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HEY6014824.1"
                     /translation="MTVMSMGAHGAGATAAPVVPRIEPADVVAALNGTSFDAVVIGAG
                     ILGAGTARELARRGLRTLIVDRRDVGWGTTNRSTRLVHGGLRYLEHFDFPLVHEGLRE
                     RAWLLRATPHLVTPLGFLLPFYREPWWRRAELRMGLTLYDLLSPRRSLPGHRSLSAGR
                     ALRAEPALSSSGLKSAALYWDGQVELPERLVVEVLRAAERFGATVVTRCQAVGLRVVD
                     GRVDGVTLAADTGLEAVGLADGPQRTTMNQTASEVRAPLVINASGPWADQVLATSGVR
                     RPPFLRFTQGVHLRYPFRTRHAVAFEHPVDGRLCFSVPWQGGTMVGTTDTDIEGGPEQ
                     ARVTAEEVAYVDQGARFLFPEADTARPNWAEVGVRSLMRKGGSAGSVSRKHVVLDHTS
                     DGARGLTTVAGGKLTAWRSIAADVVDRALHRTDRTALAAVGLRGEPLPARRRRGSDEM
                     RSGALPATTADRLETLYGSYADEIAAIAAGDPWWSEPLLPGQPAIRAEVAHALRAEWA
                     TTTADVVLRRLALGFDVSLGMTVGAAVADVLRERAGWTEERCRADLEDLGRELREHEL
                     APVA"
     gene            complement(2144..>2797)
                     /locus_tag="VIU37_12490"
     CDS             complement(2144..>2797)
                     /locus_tag="VIU37_12490"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6014825.1"
                     /translation="ANGGTIVGEEYFPLDHADYRKTVEKIMSSGTEVVFNTIVPPGLT
                     PFLQQLHDAGFTKRGGKIICTYFDENFLNLVPAEHVEGLYSCLDYYQCVSDPFSVRLL
                     ARYNERFPGSAAFTAGSGCSGHYRALKLWEAAVTEAGSLDQQAVIAALDHAKLAEGPG
                     GPAEMVPGEHHVRLNMYIAQAQNGNFRIVKDLGVIDPNEPRDTGSQAAELQAAGGSR"
BASE COUNT          371 a          973 c         1017 g          436 t
ORIGIN      
        1 gagtccggca tccgctactt cccgttcccg ggccgaatcg tggggcatcc gtcggtcctc
       61 gagggaagtg tcgacgagat tgccgcgtcg gcggcggcgc tgacggcaca cgagggcgtc
      121 cacgggctcg acctgctcgc atatcgccac gcggacccgg tcgagccgat catcgacgcg
      181 gtggtccggg cgtccgccgg acccgtggtc atcgccgggt cgatcgactc ggccgagcgg
      241 atcgcggcgg tgaccaggct gggcgcctgg ggattcacga tcgggggcgc ggtgttcgag
      301 ttcgcgctcc cggccgggca cacgctccag gcgcaggtcg aatgggtcct cgaagccgcg
      361 gctcgagcag cggaggacgc gaccggcggc tcgtcgcgat gaccgtcatg tcgatgggag
      421 cgcacggcgc aggcgcgacg gcagcgccgg tcgtgccccg gatcgagccg gccgacgtgg
      481 tcgccgccct gaacggcacc tcattcgacg ccgtcgtcat cggcgccggg atcctgggcg
      541 caggcacggc ccgtgaactg gcacggcgcg ggcttcgaac gctgatcgtc gaccgtcgag
      601 acgtcggctg ggggaccacc aatcggtcga cccgcctggt ccacggcggg ctccgctatc
      661 tggagcactt cgacttcccg ctcgtccacg agggcctccg tgaacgggcc tggctgcttc
      721 gagcgacgcc gcacctcgtc acgccgctgg ggttcctgct gccgttctac cgcgaaccgt
      781 ggtggcgacg ggccgagttg cggatggggc tgacgctgta cgacctcctg tcgccgcgcc
      841 ggtcgctgcc cgggcaccgg tcgctgtcgg ccggccgcgc actccgcgcg gagccggccc
      901 tgtcctcgtc cggtctcaag tccgccgcgc tctattggga cggccaggtc gagttgcccg
      961 agcggctcgt ggtcgaagtc ctgagggcgg ccgagcggtt cggcgccacc gtcgtcacac
     1021 gctgccaggc ggtcgggcta cgcgtggtcg acggacgagt ggatggcgtg acccttgccg
     1081 cggacaccgg gctcgaggcc gtcgggctgg ccgacggacc gcaacgcacc accatgaatc
     1141 agacggcgtc cgaagtgcgt gccccgctcg tcatcaatgc ctccgggcca tgggccgacc
     1201 aggtcctggc cacgtccggc gtccgtcggc cacccttcct gcggttcacc cagggcgttc
     1261 acctccgata cccgttccgc acgcgtcacg ccgtcgcatt cgagcacccg gtggacgggc
     1321 gcctgtgctt ctccgtcccg tggcagggcg gcacgatggt cggcacgacg gacacggaca
     1381 tcgagggagg cccggagcag gctcgcgtca cggccgagga ggtggcctac gtcgaccagg
     1441 gcgcccgctt cctgttcccc gaggcggaca cggcacgtcc gaactgggcc gaggtcggcg
     1501 tgcggtcgct gatgcgcaag ggcgggtcgg cgggctccgt gagccgcaag cacgtcgtgc
     1561 tcgaccacac gtccgacggc gcacggggcc tgacgacagt ggccggcggc aagttgacgg
     1621 cctggcgctc gatcgcggcc gacgtcgtgg atcgcgcgct ccaccgcacg gatcggacgg
     1681 ccctcgccgc ggtcgggctg cggggcgaac ccctgccggc ccgccggagg cgagggtcgg
     1741 acgagatgcg ttcgggtgcg cttccggcca ccacggccga ccggctcgag accctgtacg
     1801 gcagctacgc cgacgagatc gccgccatcg cggccggcga cccctggtgg tccgagccac
     1861 tcctgcccgg ccagccggcc atccgggccg aagtcgcaca cgcgctccgc gccgagtggg
     1921 ccacgacgac ggccgacgtc gtccttcgtc gactcgccct ggggttcgac gtgtcgctcg
     1981 ggatgacggt cggggccgcg gtcgcggacg tcctccgcga acgggcgggg tggaccgagg
     2041 aacgctgccg ggcagatctc gaggatctcg gccgcgagct gcgcgaacat gaactggcgc
     2101 cggtcgcctg atcgacagga catgcctcgg tccggatggg tcgctaccgg ctgcctcccg
     2161 cggcctggag ctctgctgcc tggctgcccg tgtcccgtgg ctcgttcgga tcgatgacgc
     2221 cgaggtcctt gacgatccgg aagttgccgt tctgcgcctg ggcgatgtac atgttgagcc
     2281 ggacgtggtg ctcgcccgga accatctcgg ccggtccgcc cggtccttcc gcgagcttcg
     2341 catggtcgag ggcggcgatg accgcctgct ggtcgagcga gccggcctcg gtcacggcgg
     2401 cttcccagag cttcagggcc cgatagtggc ctgagcaccc actccccgcg gtgaatgccg
     2461 cgctgcccgg aaaccgttcg ttgtacctgg ccagcagccg cacgctgaag gggtcgctga
     2521 cgcactggta gtagtcgagg cagctgtaca ggccttcgac gtgctcggcc gggacgaggt
     2581 tgaggaagtt ctcgtcgaag taggtgcaga tgatcttgcc gcctcgcttg gtgaagccgg
     2641 cgtcatggag ctgctggagg aagggcgtga ggcccggcgg aacgatcgtg ttgaagacca
     2701 cctcggtacc gctcgacatg atcttctcga ccgtcttgcg gtagtccgcg tgatcgagcg
     2761 ggaagtactc ctcgccgacg atggtgcccc cgttggc
//
LOCUS       DATDDI010000857         1730 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_289157, whole genome shotgun sequence.
ACCESSION   DATDDI010000857 DATDDI010000000
VERSION     DATDDI010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289157"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1427
                     /locus_tag="VIU37_12495"
     CDS             <1..1427
                     /locus_tag="VIU37_12495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY6014826.1"
                     /translation="GFGAAEDTNQRFHQLLSAGQTGLSIAYDMPTLYGYDTDDPEAEG
                     EFGTCGVAVSSLADMEVLLDGLPLERVSTSMTINSPAAPIWAMYIVAAEKAGVPRAAL
                     EGTTQNDILKEFVAQKEFLFPPEPSMRLVTDTIEFGTKELPRWNTISISGYHIREAGS
                     TAVQELAFTIADGMAYVEDALARGLRVDDFAPRLSFFFNSHSDFFEEIAKFRAARRIW
                     WKLMTQRYRAENERSTWMRFHTQTAGVSLTPQQPLNNLTRVAIQALAAVLGGTQSLHT
                     DAYDEALAVPTAAAALLALRQQHVIAEETGVAGTVDPLGGSWFVESLTNEVERQVWRY
                     LDEIDRRGGMVKAIAEGYPQREIADAAYRFQRAFDEGRRRIVGVNAYVDESEVTTVPV
                     LDVPPGSLEAHMARLARTRRERDPGAVEAALRGLREAASRPGTSDTNLMPHFIACAAA
                     YATLGEQCDVLRGVFGEYREPVAV"
     gene            complement(1449..>1730)
                     /locus_tag="VIU37_12500"
     CDS             complement(1449..>1730)
                     /locus_tag="VIU37_12500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014827.1"
                     /translation="TAPLAFVAGLADWPGLFVGLGQWLVGSAAIAVLFVALGAIGVRI
                     WDGWDGRERAIARREPLGRVDRRGIAIVFAVLVAVVVAVSAWLVARLAG"
BASE COUNT          270 a          654 c          583 g          223 t
ORIGIN      
        1 ccgggttcgg ggcggcggaa gacaccaacc agcgattcca ccagctgctg tccgccggcc
       61 agaccggcct ctcgatcgcc tatgacatgc cgacgctcta cggctacgac accgatgacc
      121 cggaggcaga gggcgagttc ggcacctgcg gcgtcgccgt gagctcgctg gcggacatgg
      181 aggtcctcct cgacggcctg cccctcgagc gcgtctcgac gtcgatgacg atcaactcgc
      241 cggccgcgcc gatctgggcg atgtacatcg tcgccgccga gaaggcgggc gtgccgcggg
      301 ccgcgctcga gggcacgacc cagaacgaca tcctcaagga gttcgtcgcc cagaaggagt
      361 tcctgttccc gcccgagccg tcgatgcgcc tcgtgaccga cacgatcgag ttcgggacga
      421 aggagctgcc gcgctggaac acgatctcga tcagcggcta ccacatccgc gaggccggct
      481 cgaccgcggt ccaggagctg gcgttcacga tcgccgacgg gatggcctac gtcgaagacg
      541 cgctcgcccg cggccttcgg gtcgacgact tcgcgccgcg cctcagcttc ttcttcaact
      601 cccacagcga cttcttcgag gagatcgcga agttccgagc ggcacgccgg atctggtgga
      661 agctcatgac ccagcgctac cgggccgaga acgagcgctc cacctggatg cggttccaca
      721 cccagaccgc cggcgtctcg ctcacgccgc agcagccgct caacaatctc acccgcgtgg
      781 ccatccaggc cctggccgcg gtcctcggcg gcacccagtc gctccacacc gacgcctacg
      841 acgaggctct cgccgtcccg accgccgcgg cggccctgct cgcgctccgc cagcagcacg
      901 tcatcgccga ggaaaccggc gtcgccggca ccgtcgaccc gctgggtggc tcgtggttcg
      961 tggagagcct caccaacgag gtcgagcggc aggtctggcg ctacctcgac gagatcgacc
     1021 ggcggggcgg catggtcaag gccatcgccg agggctatcc ccagcgcgag atcgccgacg
     1081 ccgcctatcg cttccagcgg gccttcgacg agggccgccg ccggatcgtc ggggtgaatg
     1141 cctacgtcga cgagtccgag gtcacgacgg tgccggtgct cgacgtcccg cccggctcgc
     1201 tcgaggccca tatggctcgg ctggcccgga cccgccgcga gcgagacccc ggcgcggtgg
     1261 aggccgccct gcgcgggctc cgcgaggcgg cctcgcgacc gggcacgtcc gacacgaacc
     1321 tgatgccgca cttcatcgcc tgcgcggcgg cctacgcgac gctcggcgag cagtgtgacg
     1381 tcctgcgcgg cgtgttcggc gagtaccgcg agccggtcgc ggtctagggc ggcgtcgcgt
     1441 cgcgcgcgtc agccggcgag tcgggcgacg agccaggccg agaccgcgac gaccaccgcg
     1501 acgaggacgg cgaacacgat cgcgatccca cgccgatcca cgcggccgag gggctcccgc
     1561 cgtgcgatcg cgcgctcgcg gccgtcccac ccgtcccaga tcctgacgcc gatcgcgccg
     1621 agggccacga acaggacggc gatcgctgcg ctcccgacca gccactgccc gagcccgacg
     1681 aacagccccg gccagtccgc gagaccggcg acgaaggcca gcggagcggt
//
LOCUS       DATDDI010000858         4038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_476051, whole genome shotgun sequence.
ACCESSION   DATDDI010000858 DATDDI010000000
VERSION     DATDDI010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476051"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /locus_tag="VIU37_12505"
     CDS             complement(<1..950)
                     /locus_tag="VIU37_12505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014828.1"
                     /translation="MTGWTSVAGHPSRHRRLGRRLGILLLIFPLIVGVIGAPANVPSV
                     HGDELSAARARQAQLKKDVAAQRARIAHLAAIQASLSADIHSTAVQLRGVNANLAQVK
                     TKISSLQTRIDAVQGDYDELVAQLGALDTQLLQVQVQEAAKRADLSASRAQLAERIRN
                     AYDSDRTSLLESFLSGGTFTDVLAEMSYYIDAGEQDKALAQQIAHDRETLAEIHQTVS
                     DTRDRTNELRQETAATKRSLDQSLADLKDARASLKKLEDKTAAALAHQKASYAKVARN
                     KAAAAAALAKSAAAQKALQNKINSLLRQSRFGRIPSRYNGA"
     gene            complement(1252..1893)
                     /locus_tag="VIU37_12510"
     CDS             complement(1252..1893)
                     /locus_tag="VIU37_12510"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HEY6014829.1"
                     /translation="MEPLSVVLGAGGFALGLAADRFATRWPEHDEEHPAGRPVDWRTA
                     TTAVVGALALGLLPLRFSGDLPAFAVFGAWFVTLVVGLAIDLDQRLLPDELTLPVIPV
                     ALLYAVSGANPLVGTELLPAVIAAVAIPAVLFIPSIPFGAGAFGLGDVKLLAGVGLLT
                     GGSRALSGVVFALVLSGVVLLVLLAARRIGRRSYVPFGPFFILGALWAVLIRG"
     gene            complement(1961..3472)
                     /locus_tag="VIU37_12515"
     CDS             complement(1961..3472)
                     /locus_tag="VIU37_12515"
                     /inference="COORDINATES: protein motif:HMM:NF013079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HEY6014830.1"
                     /translation="MQLRVVTDQPWDVPADLLVVPVASPVTFDGGLGELDRRAGGELK
                     SLVDFGDLNAKRYSTATASTGGLPARRLLLESIGDPGTVDREVVVRVAATAERRLAGR
                     AVRRLAFWLSPLADALGGDAAAVAGLVARGVLEGSYDPRTIYRDSVDSPMVVPDELIL
                     IAPGADAAALTTAAERGIVIAEGSALARTLSNRSSNDVSPEVLAEEARAIARKHDLWI
                     DVIEPERATELGMGMFMAVGRGSDNPPRMILLRSGGEGELDALGRHLAIVGKGVCFDS
                     GGISIKPSDRMEEMKMDKTGACTVIAAIATVARLAPGTPLLAVAPTVENMPGPHSTRP
                     GDVVTALNGKKVDIINTDAEGRLILGDALTYAERLGATHLVDVATLTGAVGRALGNQV
                     TGAFGTPQSFYDEVAAAGARAGERYWQLPLIEDYVTEMESWYGDLTNSGSPEGGLIKS
                     GLFLREFVTRPWVHLDIASTGYYRKATAYAPRGATGASHATLVELALAGARAG"
     gene            complement(3587..>4038)
                     /locus_tag="VIU37_12520"
     CDS             complement(3587..>4038)
                     /locus_tag="VIU37_12520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014831.1"
                     /translation="ARYDDALTLLDQADAAIAQARRLRDQLSNTVDVPVLDQWLDRNA
                     AYDKALRELYKVISKVGSRVTDAVRKAIAAEQAAKEKLPPDTRGLVVIMAEIGRGGMN
                     GAVIAIEEARAKLIDAIAAGNPAASGPGSTGGPGPGSSGSPEPTATP"
BASE COUNT          550 a         1435 c         1503 g          550 t
ORIGIN      
        1 gcgccgttgt agcgcgacgg gatgcgcccg aagcggctct ggcgcaggag gctgttgatc
       61 ttgttctgga gcgccttctg cgccgcggcc gacttggcca gggcagcggc cgccgcggcc
      121 ttgttcctgg cgaccttggc atacgacgcc ttctggtggg ccagcgccgc ggcggtcttg
      181 tcctcgagct tcttgagcga ggccctggcg tccttgaggt cggccaggct ctggtccagc
      241 gagcgcttgg tcgcggctgt ctcctggcgc agctcgttcg tccggtcgcg ggtgtccgag
      301 acggtctggt ggatctcggc cagcgtctcc cggtcgtgcg cgatctgctg ggccagcgcc
      361 ttgtcctgct cgccggcgtc gatgtagtag ctcatctcgg cgagcacgtc cgtgaatgtc
      421 ccgcccgaca ggaacgactc gagcagcgac gtccggtcgc tgtcgtaggc gttccggatc
      481 cgctcggcca gctgcgcgcg gctggcgctc aggtcggcgc gcttggccgc ttcctgcacc
      541 tggacctgga ggagctgggt gtcgagcgcg cccagctgcg cgacgagctc gtcgtagtca
      601 ccctggacgg cgtcgatccg ggtctgcagc gaggagatct tcgtcttgac ctgggccagg
      661 ttggcgttga ccccgcgcag ctggaccgcg gtgctgtgga tgtcggccga caggctggcc
      721 tggatggcgg ccaggtgggc gatccgggcg cgctgtgccg cgacgtcctt cttgagctgg
      781 gcctggcggg cgcgcgcggc gctcagctcg tcgccgtgga cgctcggcac gttcgcgggc
      841 gcgccgatca cgccgacgat gagcgggaag atcagaagga ggatgccgag gcgacggccg
      901 aggcgacgat gccgggacgg gtgtccggcg accgaagtcc agccagtcac gggcgaacgg
      961 gcctcacgat ccgtcgtgcg gcgctgctcc agggcgatgt catcgtgcga gccaactccg
     1021 atagtcgccc cggatccaga cgcgcggtgc gcgcaggacc cgagagcgtc aagcggcgac
     1081 gcccgccggt ggatcgccgt ccggagtggg cacgactcct tgacgacacc ggctcgaggg
     1141 catgatacgc gcccgagtct aggtcgggca gcgccgggcc ggcgctgggt cgatggtccc
     1201 ggcgtgccac gggaccgtaa cgggagggcc gggcctgccc ggtccccgac cctacccgcg
     1261 gatcagcacc gcccagagcg cgccgaggat gaagaacggc ccgaacggca cgtagctccg
     1321 ccgcccgatc cggcgcgccg cgagcagcac gagcagcacg acgcccgaca gcaccagcgc
     1381 gaacaccacg ccgctcaacg cgcggctccc gccggtcagc aggccgaccc cggcgagcag
     1441 cttgacgtca ccgagcccga acgcgccggc gccgaacggg atcgacggga tgaacaggac
     1501 cgccgggatg gccaccgcgg cgatcaccgc gggcagcagc tccgtcccga ccagcgggtt
     1561 ggcgccgctg accgcataga gcagggcaac cgggatgacc ggcagcgtca gctcgtcggg
     1621 cagcagccgc tggtcgaggt cgatcgccag gcccacgacc agcgtgacga accaggcccc
     1681 gaagaccgcg aatgccggga gatcacccga gaaccggagc ggcagcaggc ccagcgccag
     1741 cgcgccgacg accgcggtgg tcgccgtgcg ccagtcgacg ggccgtcctg ccgggtgctc
     1801 ctcgtcgtgc tccggccagc gcgtggcgaa gcggtcggcc gccaggccga gggcaaagcc
     1861 cccggctccc aggacgacgg acagcggctc catcgacgga caggcgagcg ggcgagcggg
     1921 gcgcgacgac gaccgcggcc ggccgggacg gcgacccggg tcagccggcc cgggcgccgg
     1981 cgagggccag ctccacgagc gtcgcgtgcg acgcgccggt cgcgccgcgc ggggcgtagg
     2041 ccgtcgcctt gcggtagtag ccggtcgacg cgatgtcgag gtggacccac ggccgcgtca
     2101 cgaactcgcg caggaacagc ccgctcttga tcagcccgcc ctccggcgag ccggagttcg
     2161 tgagatcgcc ataccagctc tccatctcgg tcacgtagtc ctcgatgagc gggagctgcc
     2221 agtagcgctc acccgctcgc gccccggccg ccgcgacctc gtcgtagaac gattgcggcg
     2281 tcccgaacgc gccggtcacc tggttgccga gcgcgcgccc gacggcgccc gtcagcgtcg
     2341 cgacgtcgac gaggtgggtc gcccccaggc gctcggcgta ggtcagcgcg tcgcccagga
     2401 tcagccggcc ctcggcgtcg gtgttgatga tgtcgacctt cttgccgttg agcgcggtga
     2461 cgacgtcacc gggtcgcgtc gagtgcgggc cgggcatgtt ctcgacggtc ggcgccacgg
     2521 cgaggagcgg cgtgccgggt gcgagccgcg ccacggtcgc gatcgccgcg atcaccgtgc
     2581 aggcaccggt cttgtccatc ttcatctctt ccatccggtc ggatggcttg atgctgatgc
     2641 cgcccgaatc gaagcagacg cccttgccca cgatcgccag gtggcgcccg agcgcgtcga
     2701 gctcgccttc cccgccggag cgcagcagga tcatccgcgg cgggttgtcg ctgccccggc
     2761 cgacggccat gaacatgccc atgccgagct cggtcgcccg ctcgggctcg atcacgtcga
     2821 tccacaggtc gtgcttgcgc gcgatggccc gggcctcctc ggccaggacc tccgggctga
     2881 cgtcgttcga ggaccggttg gacagcgtcc gcgccagggc ggagccctcg gcgatgacga
     2941 tgccgcgctc ggcggccgtc gtgagcgccg cggcatccgc gccgggcgcg atgaggatca
     3001 actcgtcggg cacgaccatc ggcgaatcga ccgagtcgcg atagatcgtg cgcgggtcgt
     3061 acgagccttc gagcacgccg cgcgccacga gcccggcgac ggcggcggcg tccccgccca
     3121 gcgcgtcggc caggggcgac agccagaacg cgaggcgccg gacggcgcga ccggccagtc
     3181 ggcgctccgc cgtggcggcg acccggacga ccacctcgcg gtcgaccgtg cccggatccc
     3241 cgatcgactc gagcagcagc cgccgggcgg gcagtccgcc ggtggacgcg gtcgcggtcg
     3301 agtagcgctt ggcgttcagg tcgccgaagt cgacgagcga cttgagctcg ccgccggccc
     3361 ggcgatcgag ctcgccgagg ccgccgtcga aggtgaccgg cgaagcgacc gggacgacga
     3421 ggagatccgc gggcacgtcc cacggctgat cggtgacgac acgaagctgc acgggtatcc
     3481 agacctccgg aggaggaccg ccagcggtcg cgcggcgcgg cggtccaggc gaaacgttgc
     3541 ggtcagtgta gccgcggtca ggacgtgggg gaggggcgtc cggcggtcag ggcgtggcgg
     3601 tcggctcggg cgacccggag gacccggggc cggggccgcc cgtcgatccc ggtccggacg
     3661 cggccgggtt gccggcggcg atcgcgtcga tcagcttggc gcgcgcctcc tcgatcgcga
     3721 tgacggcccc gttcatcccg ccgcggccga tctcggccat gatcaccacc agcccgcgcg
     3781 tgtcgggcgg aagcttctcc ttggccgcct gctccgccgc gatcgccttg cggaccgcgt
     3841 ccgtcacccg gctgcccacc ttcgagatca ccttgtagag ctcgcggagc gccttgtcgt
     3901 acgcggcgtt ccgatcgagc cactggtcga gcacgggcac gtccacggtg ttggaaagct
     3961 ggtcgcggag ccgcctcgcc tgggcgatgg cggcgtcggc ctgatcgagc agggtcagcg
     4021 cgtcgtcgta tcgggcgg
//
LOCUS       DATDDI010000859         2412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_330589, whole genome shotgun sequence.
ACCESSION   DATDDI010000859 DATDDI010000000
VERSION     DATDDI010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330589"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VIU37_12525"
     CDS             complement(<1..761)
                     /locus_tag="VIU37_12525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014832.1"
                     /translation="MSLTVFLAVTLGFAALTLVTRRRPGLSTALGVTGLLVAVLAAWS
                     LNPTELVAIGQGGLVGSPYARLFLVLGSLVGLGLAVAGVATGTRRDAPMATLATLGIA
                     GLTLTLADPRTAVAAATAGGFFGVWLTIAPGEDRMGATLGVRELRAVVIAGAMAIAAT
                     AWIGRDLTQLAAQPVVFGLAYLAFALAVAVRFGAIPFHLWAARLTDAAPETALPIITV
                     LAPASLAIVALAWNDASIAPLLVDLEPERMVVLAVA"
     gene            complement(758..1417)
                     /locus_tag="VIU37_12530"
     CDS             complement(758..1417)
                     /locus_tag="VIU37_12530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014833.1"
                     /translation="MNPALAGVALAVVIGAVVAGSARNARTAILGLVAVMLFGAFLAE
                     PMAQPLGLAARLVGATLSGYLLWVATRGGGVWTGGSLLGWPAEVLLAVAAAAVGYGSH
                     GLGAPALGPDLAQAAGFALAALSIAPIANGRDIVRVGIGLVLLTNGAILVRTALGGTP
                     EPLEQVVIAGLVAALGGAVAVLAMSARAEGVDFELAAERAGRVRRAPDAHRIETRPDA
                     R"
     gene            complement(1428..2021)
                     /gene="lepB"
                     /locus_tag="VIU37_12535"
     CDS             complement(1428..2021)
                     /gene="lepB"
                     /locus_tag="VIU37_12535"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEY6014834.1"
                     /translation="MTRRPMFGCLFEIVETLVLTLIIFLVIQNFVAQPYKVQQQSMEH
                     TLEPDQYVLVDKLTPRLDTYKRGDIVVFTPPDQWAQEDGTPFIKRVIGVGGDKVEVKD
                     GEVFVNGTALVEPYLFADAPGDPPEPTIASQESWTVPAGELFLMGDHRANSADSRSFG
                     TVPVSHIIGRAWLRYWPVNVFGILPTPTHPELTTSIP"
BASE COUNT          380 a          873 c          853 g          306 t
ORIGIN      
        1 gccaccgcca ggaccaccat ccgctccggc tcgaggtcca cgagcagcgg cgcgatcgag
       61 gcatcgttcc aggccagcgc gacgatcgcg agcgaggccg gggcgagcac ggtgatgatg
      121 ggcagggccg tctccggcgc cgcgtcggtc agtcgggcgg cccacaggtg gaaggggatc
      181 gcgccgaacc ggaccgccac cgccagggcg aaggccaggt aggccagccc gaagaccacc
      241 ggctgcgcgg ccagctgcgt caggtcgcga ccgatccagg cggtggccgc gatcgccatc
      301 gccccggcga tcacgacggc ccgcagctcg cggacgccga gggtcgcgcc catccggtcc
      361 tcgcccggag cgatggtcag ccagacaccg aagaacccgc cggccgtcgc ggccgcgacg
      421 gccgtccgcg gatcggccag tgtcagcgtc aggccggcga tcccgagcgt cgccagcgtc
      481 gccatcggcg cgtcgcggcg cgtgccggtc gcgacgcccg cgaccgcgag cccgaggccc
      541 accagggagc cgagcaccag gaacagccgg gcatacggcg agccgaccag accgccctgt
      601 ccgatggcca ccagttcggt tgggttgagc gaccaggccg ccagcaccgc gaccaggagc
      661 ccggtcacgc cgagcgcggt cgacagcccg ggccgtcgcc gtgtcaccag ggtgagcgcg
      721 gcgaagccga gggtgacggc caggaagacg gtcaggctca tcgcgcgtcg ggacgcgtct
      781 cgatccggtg cgcgtcgggc gcccggcgga cgcggccggc ccgttctgcc gcgagctcga
      841 aatcgacgcc ctcggcccgc gcggacatcg cgagcaccgc cacggcaccc ccgagggccg
      901 cgaccaatcc cgcgatgacg acctgctcga gcggctcggg cgtgccgcca agggctgtcc
      961 ggacgaggat ggcgccgttg gtcaacaaca ccaggccgat ccccacccgg acgatgtccc
     1021 ggccgttggc gatcggcgcg atcgacaacg ccgccagggc gaacccggcc gcctgggcca
     1081 ggtccggccc gagcgccggc gcacccagcc cgtgactccc gtagccgacg gccgccgccg
     1141 cgacggcgag caacacctcc gcgggccagc cgagcagcga tccgcccgtc cacacgccgc
     1201 cgccgcgcgt cgcgacccag agcaggtagc cggacagcgt cgccccgacg aggcgcgccg
     1261 cgagaccgag gggttgcgcc atcggctcgg ccaggaaggc gccgaacagc atcacggcca
     1321 ccaggccgag gatggcggtg cgggcgttcc tggcggatcc ggcgaccacg gcgccgatca
     1381 cgaccgcgag cgcgaccccc gccagggccg ggttcacggg tgggtcctca tgggatgctg
     1441 gtggtcagct ccgggtgcgt cggcgtgggc aggatgccga agacgttgac cggccagtag
     1501 cgcagccagg cccgtccgat gatatgcgag acgggcaccg tcccgaacga gcgggagtcg
     1561 gccgagttcg cccggtgatc gcccatcagg aagagctcac cggcggggac cgtccaggat
     1621 tcctgggagg cgatggtcgg ttcgggcgga tcgcccggcg cgtcggcgaa caggtacggc
     1681 tcgacgaggg ccgtgccgtt gacgaagacc tcgccgtcct tgacctcgac cttgtcgccg
     1741 ccgaccccga tcacccgctt gatgaacggc gtgccgtcct cctgggccca ctggtccggc
     1801 ggcgtgaaca cgacgatgtc accccgcttg taggtgtcca gcctgggtgt cagcttgtcg
     1861 accaggacgt actggtccgg ttcgagcgtg tgctccatcg actgctgctg gaccttgtac
     1921 ggctgcgcga cgaagttctg gatgacgagg aagatgatca gggtgaggac gagtgtctcg
     1981 acgatctcga agagacaccc gaacatgggt cgtcgggtca caagactgcg cagtataggg
     2041 gctccacccc cgtgccgccg ccgggtggcc gggcatgcat atcgaacctc cgttccgagt
     2101 ttgacccggc ttctggcgcc ttgatacact cgcgttcgtc ctgcaaggtt ccagccccgg
     2161 gcggatgccc gttggacctc ggcaacgtct ccccggtcgc agttccgaag cggctcgtca
     2221 tgcgcgccat ggccggatcg cggctcccta tctcgaggag gatccgacaa ccctgatgga
     2281 cgccagtgcg ctccagctga tcatcctgcc ggcgggaatc atcgccgtcc tgttcgccgt
     2341 ctacctcgcc cgtgacgtgc tctcgcgcga caccgggacc aaggagatgg aagacgtcgc
     2401 cggcaccatc tt
//
LOCUS       DATDDI010000860         1645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_642949, whole genome shotgun sequence.
ACCESSION   DATDDI010000860 DATDDI010000000
VERSION     DATDDI010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642949"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VIU37_12540"
     CDS             <1..658
                     /locus_tag="VIU37_12540"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6014835.1"
                     /translation="TCVDIDAASVEATAREIGPAAFAVAADVSVAAQVQAYTDATVER
                     WGGLHVVFNNAGVNLPGVFHEASDDVVDRTLNVNVKGCIYGCRYAIPHMLRGGGGSLI
                     NTSSVNGLVAEPFLAIYATSKGAIVMLSKGIALDYAKLGIRCNAIAPGWVDTPVNYAH
                     AEMLGGLDKVYAEIDSFQPIGRPGEPREIANVALFLASDESSFVTGSVLVADGGMTAK
                     "
     gene            741..>1645
                     /locus_tag="VIU37_12545"
     CDS             741..>1645
                     /locus_tag="VIU37_12545"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014836.1"
                     /translation="MSARHQAHPAKHPRLEELEGMVRDGRIDTLIVAITDMQGRLMGK
                     RVQAQAFLNGVIDHGAHFCTYLLGTDMEMNTPEGFALMNWETGYGDWIANPVWETLRV
                     LPWLEKTAMVLGDATDEETHAEIPVAPRTILKRQVDRAAAAGYAVKAGSEFEYYVLKE
                     SWEESNRRGWAIPERFGYYNEDYHLLQATKAEPLHRLLRNQMTEARIPIEFSKGEAAP
                     GQHEVNIRYDHVLESADRSVIFKHGAKEIAYLNGWGITFMAKPDASWTGSSGHLHMSL
                     WDVAADRSLTHDPDAGLPYGMSRLF"
BASE COUNT          287 a          580 c          551 g          227 t
ORIGIN      
        1 cacctgcgtc gacatcgacg cggcgtcggt cgaggcgacg gcacgcgaga tcggacccgc
       61 ggccttcgcg gtcgccgccg acgtctccgt cgcggcccag gtccaggcct acaccgacgc
      121 cacggtcgag cggtggggcg gactccacgt cgtcttcaac aacgccggcg tcaacctgcc
      181 gggcgtcttc cacgaggcca gcgacgacgt ggtggaccgc accctcaacg tgaacgtcaa
      241 gggctgcatc tacggctgcc gctacgcgat cccgcacatg ctccggggtg gcggcggatc
      301 gttgatcaac acgagctcgg tcaacgggct ggtcgccgag ccgttcctgg cgatctacgc
      361 gacctcgaag ggggcgatcg tgatgctgtc caagggcatc gcgctcgact acgccaagct
      421 gggcatccgc tgcaacgcga tcgcgcccgg ctgggtcgac acgcccgtca actacgccca
      481 tgccgagatg ctcggcggcc tcgacaaggt ctacgcggag atcgactcgt tccagccgat
      541 cgggcggccc ggcgagccgc gggagatcgc gaacgtcgcc ctgttcctgg cgtcggacga
      601 atcgtcgttc gtgaccggtt cggtcctcgt cgcggacggt gggatgaccg cgaaatagcg
      661 cagccagcgg ccacgcccgg ccgtaccatg cgccgatcca tgcgcccgtc cgtcacgcat
      721 ggccccaccg gagaggcacc atgagcgctc gccaccaggc ccatcccgcg aagcacccgc
      781 gcctcgagga gctcgaaggc atggtgcgcg acggtcggat cgacacgctg atcgtggcga
      841 tcaccgacat gcagggccgg ctgatgggca agcgcgtcca ggcccaggcg ttcctcaacg
      901 gcgtcatcga ccacggcgcg cacttctgca cgtacctgct gggcacggac atggagatga
      961 acacgcccga ggggttcgcg ctgatgaact gggagaccgg ctacggcgac tggatcgcca
     1021 acccggtctg ggagacgctc cgcgtcctgc cgtggctcga gaagacggcg atggtgctcg
     1081 gcgacgcgac cgacgaggag acgcacgcgg agatccccgt cgcgccgcgc acgatcctca
     1141 agcggcaggt cgaccgggcg gcggcggcag gctacgcggt caaggcgggc tccgaattcg
     1201 agtactacgt cctcaaggag tcctgggagg aatcgaaccg gcgcggctgg gcgatccccg
     1261 agcgcttcgg ctactacaac gaggactacc acctcctcca ggcgaccaag gccgagccgc
     1321 tccatcggct gctgcgcaac cagatgaccg aggcacggat cccgatcgag ttcagcaagg
     1381 gcgaggcggc gcccggccag cacgaggtca acatccgcta cgaccacgtc ctcgaatcgg
     1441 ccgaccggag cgtgatcttc aagcacggcg ccaaggagat cgcctacctc aacggctggg
     1501 ggatcacctt catggccaag cccgatgcct cctggacggg ctcgtcgggc cacctccaca
     1561 tgagcctgtg ggacgtcgcc gcggaccgct cgctgacgca cgacccggac gccggcctgc
     1621 cgtacggcat gagccggctg ttcag
//
LOCUS       DATDDI010000861         1597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_518066, whole genome shotgun sequence.
ACCESSION   DATDDI010000861 DATDDI010000000
VERSION     DATDDI010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518066"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..607)
                     /locus_tag="VIU37_12550"
     CDS             complement(176..607)
                     /locus_tag="VIU37_12550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014837.1"
                     /translation="MTLLPWDYFWISFSKRNFPDLFDPVWIASLVLLAVLIVAYTIRT
                     RQLHRHRLYLDMWEWLLWTGIITFFLLVMGAVFVFDFAVELTILVVGVGVLVWVRFWR
                     YPALFEAYEVQLARQRYLARAKASRPEATIRTKTTKRRRRR"
     gene            720..>1597
                     /gene="purH"
                     /locus_tag="VIU37_12555"
     CDS             720..>1597
                     /gene="purH"
                     /locus_tag="VIU37_12555"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF013931.4"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEY6014838.1"
                     /translation="MRALLSVASRDGISAFTRGLQALDIEVYATDGTRDHLAQDGIET
                     RAVSELTGSEAFLGGQVKTFHPSIYAGILARRDKPEQMAELEAQGIASIDLVAVNVKP
                     FGAEVGKHAVAVDQAVEMIDVGGAALLSAAARNAAGVVVLSSPDHYPRVLAEIKERGL
                     VSAELRAKLAAEAYATIAAYHAEIAAYLNQLTSTMFPKRLAMVLEKVTDLRYGENPHQ
                     TAAFYRETTHRSGTLADATLIQGGEPTFNNLLDLDAALNLVREFRDPAVVVLKHNNPC
                     GAGIGTSLAEAFQRAYA"
BASE COUNT          275 a          563 c          546 g          213 t
ORIGIN      
        1 gccagctccg agatcagccc gcgggcgtcg gagtggatga cctggccggt caggcccgtc
       61 gtgccgggcg ggccctcggg tcgacgatgg ccggcgccga aacgccggac ctcgatgggc
      121 atgtcaggcc tgcaaccggg ccgcggcccg gagcgatcgg gcggtcaggg cgggcctagc
      181 ggcgccgccg ccgcttcgtc gtcttggtgc ggatcgtcgc ctcgggccgg gacgccttgg
      241 cccgggcgag gtagcgctgg cgcgcgagct ggacctcgta ggcctcgaac aacgccgggt
      301 agcgccagaa ccggacccac acgagcaccc ccacgccgac gaccaggatc gtcagctcga
      361 ccgcgaagtc gaacacgaac accgcgccca tcacgagcag gaagaacgtg atgatcccgg
      421 tccacagcag ccactcccac atgtcgaggt agaggcggtg ccggtggagc tgccgcgtcc
      481 ggatcgtgta ggcgacgatc aggacggcga gcaggaccag cgacgcgatc cagaccggat
      541 cgaagaggtc cggaaagttg cgcttcgaga aggagatcca gaagtagtcc cacggcaaga
      601 gggtcacggc gagggaggat acatggccgg ggctatactc ggtcgcccac ggtcggacac
      661 gatctggccc ttggcccgcg atcagccctg aacccgccgg aatctggagg atgccccggg
      721 tgcgagccct gctgtcggtc gcgtcccgag acggaatctc cgccttcacg cgcgggctgc
      781 aggccctcga catcgaggtc tacgccaccg acgggacccg cgatcacctc gcccaggacg
      841 ggatcgagac gcgggccgtg tccgagctga ccggcagcga ggcgttcctc ggcggccagg
      901 tcaagacctt ccatccctcg atctacgccg ggatcctcgc ccgccgcgac aagcctgagc
      961 agatggccga gctcgaggcc cagggcatcg cctcgatcga tctcgtggcg gtgaacgtca
     1021 agccgttcgg cgccgaggtc ggcaagcacg ccgtcgcggt cgaccaggcg gtcgagatga
     1081 tcgacgtcgg aggcgccgcg ctgctcagcg ccgccgcgcg gaacgcggcc ggcgtcgtcg
     1141 tcctctccag cccggaccac tacccccgag tcctggccga gatcaaggaa cgcgggctcg
     1201 tgtccgccga gctccgggcg aagctcgccg cggaggccta cgcgaccatt gccgcgtacc
     1261 atgccgagat cgccgcctac ctcaaccagc tgacttcgac gatgttcccg aagcgtctgg
     1321 cgatggtcct cgagaaggtc acggacctgc gctacggcga gaacccccac cagacggcgg
     1381 cgttctaccg cgagacaacg caccgctccg ggacgctcgc cgacgcgacc ctcatccagg
     1441 gtggcgagcc gacgttcaac aacctgctcg atctcgatgc ggcgctcaac ctcgtccgcg
     1501 agtttcgcga cccggcggtg gtcgtgctca agcacaataa cccctgtggc gcgggaatcg
     1561 ggacgtcgct tgccgaggcc ttccagcggg cgtacgc
//
LOCUS       DATDDI010000862         3486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_60193, whole genome shotgun sequence.
ACCESSION   DATDDI010000862 DATDDI010000000
VERSION     DATDDI010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3486
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60193"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VIU37_12560"
     CDS             <1..396
                     /locus_tag="VIU37_12560"
                     /inference="COORDINATES: protein motif:HMM:NF016750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY6014839.1"
                     /translation="CGEDAQNTFAIAVAGRGFDARISTESAVPLPESACVYCGNCIGV
                     CPTGALMFKSEFDMREAGTWDESAQTVTDTICPYCGVGCAVSLHVQDDRIVKVTSPAD
                     SSVTDGHLCIKGRFGFEFVNSRPGRGPEA"
     gene            complement(393..1256)
                     /gene="fdhD"
                     /locus_tag="VIU37_12565"
     CDS             complement(393..1256)
                     /gene="fdhD"
                     /locus_tag="VIU37_12565"
                     /inference="COORDINATES: protein motif:HMM:TIGR00129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEY6014840.1"
                     /translation="MRDVRQPPVRHISSRRIVAVRGESLEVRDDRVVGEAPLEIRAAG
                     PHQDPVAVAVTMRTPGHEAELAVGFLRSEGLIRGDEAITTSAGDPVTLAQPDDTIVVR
                     LSKPFDEGAVAERHFVATASCGICGKASIDEVAVRCDPIPSGPVVTRAVILALSDLMR
                     AAQRAFEETGGLHAAALFTPRGELVAIREDVGRHNALDKLVGSQVLAGALPLHQRILM
                     VSGRVSFEIVQKAAVAGIPIICAVSAPSDLAIDTAERLGVTLVGFLRGDGFNVYSHDR
                     RIDLRDLSGLG"
     gene            1277..1759
                     /locus_tag="VIU37_12570"
     CDS             1277..1759
                     /locus_tag="VIU37_12570"
                     /inference="COORDINATES: protein motif:HMM:TIGR03668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03668 family PPOX class F420-dependent
                     oxidoreductase"
                     /protein_id="HEY6014841.1"
                     /translation="MDDDPVLTRTRRNALAGARRAVLATIGPDGGPRLVPICFTLDPA
                     RPVLYSPLDEKPKRAGVHDLARVRDILRDPRVTVLADTWDEDWSQLAWTRCEGRASLL
                     EPDGPHAPEHHAAVVALRSKYPQYSTHDLAGRPIIRIELVRATGWVASDEPPGQPAGP
                     "
     gene            complement(1944..3173)
                     /locus_tag="VIU37_12575"
     CDS             complement(1944..3173)
                     /locus_tag="VIU37_12575"
                     /inference="COORDINATES: protein motif:HMM:NF014803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014842.1"
                     /translation="MIGAAPWWVRPGLEIERGRLIVAGHDAEALAREHGTPLFAYDLA
                     RFGENARRMQAALTGTGLPFRLRFAMKANPMPEVLRVFRGLGAPGTPDGVGIDACSPG
                     EVERAIECGWRPDEISFTGTNVSERDLDVLLGRDVHVNLDAISQIERYGRRGPGRAIG
                     VRVDPGAGAGYNDHLHYSGDRPTKFGIGPERLDDAIATARRHDLTIDTVHFHAGSGWL
                     ADGLPGFEAALAGAVEAVHHLRAAGCPIAEVNVGGGLGAPARADEQGIDLDAYAATLA
                     RHLGGLGVVVACEPGDYLTKDAAILLGEVVTVERRRNVTFVGLDIGWNVNCAYFIYRF
                     AQELVVCRTADAPRTETVTVAGHINEAGDVFAEDYPMPPVAEGDIVALLNAGGYLQAM
                     SSTHCLRPTGGAVFLER"
     gene            complement(3184..3456)
                     /locus_tag="VIU37_12580"
     CDS             complement(3184..3456)
                     /locus_tag="VIU37_12580"
                     /inference="COORDINATES: protein motif:HMM:NF021552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2277 family protein"
                     /protein_id="HEY6014843.1"
                     /translation="MCRSIKTLRRAETAATTGELEAAARQFVRKISGYRTPSSRNADA
                     FEAAIAEIAHSSEHLLEALGVAVEEGPDRWTPGGSRATPAAASQPG"
BASE COUNT          487 a         1284 c         1246 g          469 t
ORIGIN      
        1 tgcggcgagg acgctcagaa cacgttcgcg atcgccgtcg ccggacgcgg cttcgatgcc
       61 cggatctcga ccgagtcggc ggtgccgctg cccgaatcgg cctgcgtgta ctgcggcaat
      121 tgcatcggcg tctgcccgac cggcgcgctg atgttcaagt ccgagttcga catgcgcgag
      181 gcaggcacct gggacgagtc cgcccagacc gtgaccgaca cgatctgccc gtactgcggg
      241 gtcggctgcg cggtcagcct ccacgtccag gacgaccgga tcgtcaaggt cacctcaccg
      301 gccgactcgt cggtgaccga cggccacctc tgcatcaagg gccgcttcgg gttcgagttc
      361 gtgaacagcc ggcccggccg gggtcccgag gcctagccca ggccgctcag gtcgcgcagg
      421 tcgatccggc gatcgtggct gtagacgttg aagccgtcgc cgcggaggaa cccgaccagg
      481 gtcacgccga ggcgctcggc agtgtcgatc gcgaggtccg acggcgccga caccgcgcag
      541 atgatcggga tgccggccac ggcggccttc tgcacgatct cgaagctgac gcgccccgac
      601 accatcagga tccgctggtg cagcggcagc gcgccggcca gcacctgcga gccgaccagc
      661 ttgtcgagcg cgttgtggcg gcccacgtcc tcgcgaatgg caacgagctc gccgcgcggc
      721 gtgaacagcg ccgccgcgtg gagcccgccg gtctcctcga aggcgcgctg ggcggcgcgc
      781 atgaggtccg acagcgcgag gatcaccgcg cgggtgacca ccgggccgga cgggatcggg
      841 tcgcaacgga ccgcgacctc gtcgatcgac gccttgccgc agatgccgca cgacgccgtc
      901 gcgacgaagt ggcgttcggc cacggcgccc tcgtcgaagg gcttcgagag ccggacgacg
      961 atcgtgtcgt ctggctgggc gagcgtgacc gggtcgccgg cgctggtggt gatcgcctcg
     1021 tcgccgcgga tcaggccctc cgagcgcagg aagccgacgg ccagctccgc ctcatgaccc
     1081 ggcgtgcgca tggtgaccgc caccgcgacc ggatcctggt gcggcccggc cgcccggatc
     1141 tccagcgggg cctcgccgac cacgcggtcg tcgcggacct cgagcgactc cccgcgaacg
     1201 gccacgatcc gacggctcga gatgtgccgg accggcggct ggcggacgtc gcgcatggcg
     1261 gcatgatagg cgggagatgg acgacgaccc ggtcctgacg cggacccggc gcaacgccct
     1321 ggcgggcgcg agacgcgccg tcctggcgac gatcggcccg gacgggggcc cgcggctcgt
     1381 gccgatctgc ttcacgctcg acccggcccg gcccgtcctg tactcacccc tcgacgagaa
     1441 gcccaagcgg gcaggcgtcc atgacctggc ccgagtccgc gacatccttc gcgatccgcg
     1501 cgtcaccgtg ctggcggaca cgtgggacga ggactggtcg cagctcgcgt ggacacggtg
     1561 cgaggggcgg gcctcgctgc tggagccaga cggcccgcac gcccccgaac atcatgccgc
     1621 ggtcgtcgcg ctgcgctcga agtacccgca gtactcgact catgatctcg ccggccggcc
     1681 gatcatccgg atcgagctgg tgcgtgcgac cggctgggtc gcgtcggacg agccgcctgg
     1741 ccagcccgcc ggcccgtgat tgcccatcgg gtgcgcgttg cgtcgcccgg gcccgtggat
     1801 tccgcggcga tccgccggtc ggtccggtca gatccgccgt tcaagcgacg agtggcccac
     1861 gacgtgcgcc aaccgtcggt ggacgacgac gccgacgacg caatgcgcgc cggctgcgcc
     1921 gaccgcgccc gcccgccggg tagctagcgc tcgaggaaga ccgcgccgcc ggtcggccgg
     1981 aggcagtgcg tcgagctcat cgcctggagg tacccgccgg cattgaggag cgccacgatg
     2041 tcgccctcgg caaccggggg catcgggtag tcctcggcga acacgtcgcc ggcctcgttg
     2101 atgtgcccgg cgaccgtgac ggtctcggtt cgtggcgcat cggccgtccg gcacacgacc
     2161 aactcctgcg cgaagcggta gatgaagtag gcgcagttca cgttccagcc gatgtcgagc
     2221 ccgacgaagg tcacgttccg ccgccgctcc acggtcacga cctcgccgag caggatcgcg
     2281 gcatccttgg tgaggtagtc gccgggctcg caggcaacga cgacgccgag accgccgagg
     2341 tgtcgcgcca gcgtcgccgc atacgcgtcg aggtcgatcc cctgctcgtc cgcccgggcg
     2401 ggcgcgccca gcccgccacc gacgttcacc tcggcgatcg ggcagccggc cgcccgcagg
     2461 tggtggaccg cctccacggc cccggccagc gccgcctcga accccggcag gccgtccgcc
     2521 agccagcccg agccggcgtg gaagtggacc gtgtcgatcg tcaggtcgtg gcggcgcgcc
     2581 gtggcgatcg cgtcgtcgag ccgttcgggc ccgatcccga acttcgtcgg ccgatcaccc
     2641 gagtaatgga gatggtcgtt gtagcccgcg cccgcgcccg gatccacgcg tacgccgatg
     2701 gcacgcccgg gcccgcggcg cccgtagcgc tcgatctggc tgatggcgtc gaggttgacg
     2761 tggacgtccc gtccgagcag cacgtccagg tcccgctcgg agacgttggt cccggtgaag
     2821 ctgatctcgt ccgggcgcca gccgcactcg atcgcgcgtt cgacctcgcc gggcgagcag
     2881 gcgtcgatcc ccacgccgtc tggcgtgccc ggtgcgccca gcccgcgaaa cacgcggagc
     2941 acctccggca tcgggttcgc cttcatcgcg aaccggaggc ggaagggcag gcccgtgccg
     3001 gtcagcgccg cctgcatccg ccgggcgttc tccccgaagc gggccaggtc gtaggcaaac
     3061 agcggcgtcc cgtgctcgcg ggcgagggcc tcggcgtcgt gcccggcgac gatgagccgc
     3121 ccgcgctcga tctcgaggcc gggacggacc caccacgggg cggcgccgat cacggacgcg
     3181 gggtcagccg ggctggctcg ccgccgcagg cgtcgccctc gaaccgcccg gcgtccagcg
     3241 atccgggccc tcctcgaccg ccacgccgag tgcctcgagc agatgctccg acgaatgcgc
     3301 gatctcggcg atggccgcct cgaaggcgtc ggcgttccgc gaggacggcg ttcggtagcc
     3361 gctgatcttg cgaacgaact ggcgggcggc cgcctccagc tcacccgtgg tcgcggccgt
     3421 ttcggcccgc cgcagggtct tgatgcttcg gcacatggcc ggagggtaca acgagacgcg
     3481 aatccg
//
LOCUS       DATDDI010000863         2106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_39231, whole genome shotgun sequence.
ACCESSION   DATDDI010000863 DATDDI010000000
VERSION     DATDDI010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39231"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..893
                     /locus_tag="VIU37_12585"
     CDS             <1..893
                     /locus_tag="VIU37_12585"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY6014844.1"
                     /translation="IPVVIAVLAIAGIATALLRGVAGAARDLDAMLAATRRVEEGDYG
                     VRLRRTRSDLAPIQELARGFDTMTARLEADEEQRRTLLADVSHELRTPLAVITGNLEA
                     IIDGVYPPDPAHLTPILEETRVMERLIEDLRTVTLSEAGTLALHPEPTDPDILIAEVL
                     HVFAPGATASGVTLVSNSADDLPILDIDPVRIREVLSNLVANALRHTPAGGSITVGAT
                     TTAASVLLTVRDTGPGIDPELLPHVFDRFVKGVGSRGSGLGLAIARGLVEAHGGSITA
                     ESPAGGGTTFRVELPRTVER"
     gene            918..2024
                     /locus_tag="VIU37_12590"
     CDS             918..2024
                     /locus_tag="VIU37_12590"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent alcohol dehydrogenase"
                     /protein_id="HEY6014845.1"
                     /translation="MTTIRAAVLRTRGAPATIEDLEIAEPGAGEVRVRILGSGVCHSD
                     LHVRDGDWPRPLPIAMGHEGAGVVEAVGPGVSLRPGQAVALSWLVPCGRCRSCRTGRP
                     WACPDSPSFTHRLDGGGTALRGADGSPVLSYCGIGTMAESTVVREAAAIPLPEGVDPA
                     VAALIGCCVSTGVGAVTKTAAVPAGASVAVIGLGGVGLSCVMGAVLAGAGRIVAIDRV
                     PAKLDVARELGATDGLVATGDPTATLQALRDLTDGGPDFVFEAIGRTATVELAIESLP
                     VGGTAVLVGLTAFDARASVAAYPLVDGARRILGSNYGSADPAVDFPRYAALHLAGRLP
                     VDRLIDRRIALDDLEAAFDRLRAGEGLRQVVTFS"
BASE COUNT          246 a          801 c          765 g          294 t
ORIGIN      
        1 cgatcccggt ggtcatcgcc gtgctcgcga tcgccgggat cgccacggcg ctcctccggg
       61 gcgtggccgg cgccgcccgc gatctcgacg cgatgctcgc ggccacccgg cgggtcgagg
      121 aaggcgacta cggggtccgg ctgcgacgga cgcggtccga tctcgccccg atccaggagc
      181 tcgcccgcgg gttcgacacg atgacggccc ggctcgaggc cgacgaggag caacgacgca
      241 cgctcctggc cgacgtcagc cacgagctgc ggacgccgct ggcggtcatc accggcaacc
      301 tggaggcgat catcgacggc gtctacccgc cggacccggc ccacctcacc ccgatcctcg
      361 aggagacgcg ggtcatggaa cggctgatcg aggatctccg aaccgtcacg ctgtcggagg
      421 ccggcacgct cgccctccat cccgagccga ccgatccgga catcctgatc gcggaggtgc
      481 tccacgtctt cgcgccgggc gcgaccgcct ctggcgtcac cctggtgtcg aactcggccg
      541 acgacctgcc gatcctcgac atcgacccgg tccggatccg cgaggtgctg tccaatctgg
      601 tggcgaacgc gctccggcac acgccggccg gcggcagcat cacggttggc gccacgacga
      661 ccgccgcgtc ggtgctcctg accgtgcggg acacgggccc gggcatcgat ccggagctcc
      721 tgccacacgt cttcgaccgg ttcgtcaagg gcgtgggctc gcgtgggtcc ggactgggcc
      781 tggcgatcgc acgcggcctg gtcgaggcgc acgggggctc gatcacggcc gaatcaccgg
      841 ccggcggcgg gacgacgttc cgggtcgagc tgccgaggac cgtcgagcgc tgacgcccgg
      901 gaggctatcc tcacccggtg accacgatcc gcgcggccgt cctgcgcacc cgcggcgccc
      961 ccgcgacgat cgaggacctc gagatcgccg agccgggcgc gggcgaggtc cgggtccgaa
     1021 tcctcgggtc gggcgtgtgc cactcggatc tccacgtccg tgacggcgac tggccgcgac
     1081 cgctcccgat cgcgatgggc cacgaaggcg cgggcgtcgt cgaagcggtc gggcccggcg
     1141 tctccctgcg ccccgggcag gccgtcgcgc tgtcctggct ggtgccctgc ggccgctgcc
     1201 gatcgtgccg caccggccgg ccgtgggcct gccccgattc gccgtcgttc acgcaccggc
     1261 tcgatggcgg cggcacggcc ctccgcggcg ccgacgggtc gccggtgctg tcctactgcg
     1321 ggatcggcac gatggccgag tcgaccgtcg tgcgcgaggc ggccgcgatc ccgctccccg
     1381 agggcgtcga tccggcagtc gccgcgctga tcggctgctg cgtctcgacc ggggtcggcg
     1441 cggtgaccaa gacggcggcc gtcccggctg gcgccagcgt cgccgtcatc gggctcggtg
     1501 gcgtcgggct ctcgtgcgtc atgggcgcgg tgctcgccgg cgccgggcgg atcgtcgcga
     1561 tcgaccgggt gccggcgaag ctggacgtgg ctcgcgagct gggggcgacc gacggcctcg
     1621 tcgcgacagg cgacccgacg gccaccctcc aagcgctccg cgacctgacc gacggcggcc
     1681 ccgacttcgt gttcgaggcc atcgggcgga ccgccaccgt cgagctggcg atcgagagcc
     1741 tgcccgtcgg cggaacggcc gtgctcgtcg gcctgaccgc gttcgatgcc cgggcatcgg
     1801 tcgccgccta cccgctcgtc gacggcgccc ggcggatcct cggatccaac tacgggtccg
     1861 ccgaccccgc cgtggacttc ccgcggtacg ccgcgctgca tctcgccggc cgccttccgg
     1921 tcgaccggct gatcgatcgg cggatcgccc tcgacgatct cgaggccgcg ttcgaccggc
     1981 tgcgcgccgg cgagggattg cgccaggtcg tcaccttctc ctagcgcagc gcccgctcgc
     2041 gcccgtggtg cctgttcccg ggtctcgcgt ggcacatggg tgctcgcatg gccggacggc
     2101 gtgcgg
//
LOCUS       DATDDI010000864         2695 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_476149, whole genome shotgun sequence.
ACCESSION   DATDDI010000864 DATDDI010000000
VERSION     DATDDI010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476149"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..167)
                     /locus_tag="VIU37_12595"
     CDS             complement(<1..167)
                     /locus_tag="VIU37_12595"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY6014846.1"
                     /translation="MSEPEIDIVVMEGIDKSFPGVQALHDVDFSLTRGEIHALVGENG
                     AGKSTLIKILTG"
     gene            complement(273..1328)
                     /locus_tag="VIU37_12600"
     CDS             complement(273..1328)
                     /locus_tag="VIU37_12600"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6014847.1"
                     /translation="MTRSGTVKRLALAVALTSLVAACSSGGATTAPSAAAPSEAAPSA
                     AAPSEAAAAKTYKDLTVGFIQTGSESGWRAANTASFKETATQLGINLKFYDAQNKLEN
                     QVSAFHQFNQDPSVNVIILAALDVTGYDDVLKEAQAAGKVVVLEDRRIDADPSLYATY
                     IGSDFALEGQKAAKAMCDLLKDSTKKNVVEISGAVGASAAIDRAKGFREKMGDCGINI
                     TDTQTGNWGVPESKAVMEAFLKKSKDIQGVFAHNDEEAIGAIQAIKEAGLVPGKDIQV
                     IGVDATANGFKAMIAGELGADIECNPLLAPQVYEAALKAINGDTSLPKWVPSQEGEFF
                     AAQGADALQGILATRKY"
     gene            1841..>2695
                     /locus_tag="VIU37_12605"
     CDS             1841..>2695
                     /locus_tag="VIU37_12605"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6014848.1"
                     /translation="MTSRGRLTIKEVAEAAGVSTQTVSRVINNRPDVAPETFERVQQI
                     ISETGYSPNMFARGLTQGRSHTLGVVAYGLEYFGPSRVLTGIEQQAAAMGYAISLNLI
                     HEPELADVEGLLASLVSRQVDGVIWAVPDVGDNRAWSNAAGTDQPVPVLLVGGMGGQS
                     LLGSIGIDNRAIGRLATEHLLSGGARHVGLVTGPMDWWESRQRQLGWRESLQERGLPA
                     ADRQIVYGDWSATSGEAGLYRLVEQEPDLDAVFASNDQMALGVMHAAHRLGRRIPEEL
                     SVVGVDNIA"
BASE COUNT          390 a          913 c          916 g          476 t
ORIGIN      
        1 ccggtcagga tcttgatcaa ggtggacttg cccgcgccgt tctcaccgac gagcgcgtgg
       61 atctcgccgc gggtcagcga gaagtccacg tcatggagtg cctggacgcc cgggaaggac
      121 ttgtcgatgc cttccatcac gacgatgtcg atctcgggtt cggacatcac agacctcaac
      181 gcgtggtcag atcgggagcg gcgaccgcac tcgggccgcc ctcgcgctgc tggagcgtgg
      241 cgcggaacgc accacgctcc agcgaatgac ggctagtact tgcgagtggc caggatgccc
      301 tggagtgcgt cggcgccctg ggcggcgaag aactcgccct cctgcgacgg cacccacttc
      361 ggcagcgagg tgtcgccgtt gatcgccttg agtgccgcct cgtacacctg cggtgcgagc
      421 agcgggttgc actcgatgtc ggcgccgagc tcgccggcga tcatcgcctt gaagccgttg
      481 gccgtggcgt ccacgccgat gacctggatg tccttgcccg gcacgaggcc ggcttccttg
      541 atggcctgga tggcgccgat ggcctcttcg tcgttgtgcg cgaagacgcc ctggatgtcc
      601 ttgctcttct tgaggaaggc ctccatgacg gccttcgact cgggcacgcc ccagttgccg
      661 gtctgggtgt cggtgatgtt gatcccgcag tcgcccatct tctcccggaa gcccttggcc
      721 cggtcgatgg cggccgaggc acccacggcg ccggagatct cgacgacgtt cttcttggtg
      781 ctgtccttga gcaggtcgca catcgccttg gccgccttct ggccttcgag ggcgaagtcg
      841 gagccgatgt aggtcgcgta gaggctcggg tcggcgtcga tgcgccggtc ttcgaggacg
      901 acgaccttgc cggccgcctg ggcctccttg aggacgtcgt catagcccgt gacgtcgagc
      961 gccgcgagga tgatcacgtt gaccgacggg tcctggttga actggtggaa ggccgagacc
     1021 tggttttcca gcttgttctg ggcgtcatag aacttgaggt tgatgcccag ctgggtcgcg
     1081 gtctccttga acgaggcggt gttggccgcg cgccagccgc tctcggatcc ggtctggatg
     1141 aagccgacgg tcaggtcctt gtacgtcttc gccgccgccg cctcgctggg cgccgcggca
     1201 ctcggggcgg cttcgctcgg cgccgctgca ctcggtgcgg tcgtcgcgcc gccggacgag
     1261 cacgccgcca cgagcgacgt caacgccacg gccaacgcga gccgcttgac tgttccggat
     1321 ctcgtcatcg tctggtctcc ctgtgggcca cgaactgtcc tgactcctgg ggctcgcccg
     1381 gcacggcgtg ggcgacaccg gatgcgagcc atcaactccg acagctggac gtcagcctcg
     1441 ggtccgactc gtgcctgatg ggtccaacac catccgcgcc tcctccacct cgtcgcgctg
     1501 ccccagagct cggcacccgg cgtggcggca gccggcgcca cgacctcgct tgtcggatga
     1561 acgtccggtg gttcgatcgc cgtctggcca cgggcttggc cgcctcgaac atgcgtgccc
     1621 agttgccgtg agacgcggac ggccggttgc tatcctcccg aggagtgcga tcctccgtgc
     1681 cgagcccgac ttgccgattg gtcggggctc tgttagcgtt cccgttaccg gtaacgggac
     1741 cgctaacgga caacctatca ttgcggatag gtcgtcgtca agattgcaaa tgccgctcgg
     1801 gatggaccga ttcgaacggc gagcacacgg agctcaaggc atgacctcac gaggacgcct
     1861 gacgatcaag gaagtggccg aggccgcggg cgtgtccacc cagacggtct cgcgcgtgat
     1921 caacaaccgc cccgatgtcg cccccgagac cttcgagcgg gtccagcaga tcatctcgga
     1981 gaccggctac tccccgaaca tgttcgcgcg gggcctcacc cagggccgca gccacaccct
     2041 cggcgtggtc gcgtacggcc tcgagtactt cggcccgtcg cgcgtcctga ccggcatcga
     2101 gcagcaggcc gcggccatgg gctacgccat ctccctcaac ctcatccacg agcccgagct
     2161 ggcggacgtc gagggactgc tcgccagcct ggtctcccgg caggtcgacg gggtcatctg
     2221 ggcggtcccc gacgtgggcg acaaccgcgc ctggtcgaac gctgccggga ccgatcagcc
     2281 cgtcccggtc ctcctggtcg gtggcatggg cggccagtcc ctgctcggat cgatcgggat
     2341 cgacaatcgc gcgatcggcc ggctggcgac ggagcacctg ctttcgggtg gggcgcgcca
     2401 cgtcgggctc gtcacgggac cgatggactg gtgggagtcc cgtcagcgcc agctcggctg
     2461 gcgcgaatca ctgcaggaac ggggcctgcc cgcggccgac cggcagatcg tgtacggcga
     2521 ctggagcgcg acgagcggcg aagccggcct gtatcggctg gtcgagcagg agcccgatct
     2581 cgacgcggtc ttcgcgtcga atgaccagat ggccctgggc gtgatgcacg cggcgcatcg
     2641 gctcggccgc cggatcccgg aggagctgtc cgtcgtcggg gtcgataaca tcgcc
//
LOCUS       DATDDI010000865         1990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_289355, whole genome shotgun sequence.
ACCESSION   DATDDI010000865 DATDDI010000000
VERSION     DATDDI010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289355"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VIU37_12610"
     CDS             <1..619
                     /locus_tag="VIU37_12610"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY6014849.1"
                     /translation="DPSRPDSVPRGHLPPSSAQLRADRRVLMDDEALVQRCLSGDTEA
                     FGELVSRYERPLFNVALRMLRDREEARDATQNTFVKAWQHLDQFDRSRRFFSWLYRIA
                     VNESLNRATRRKQAESLDENLVDRGHSPAERAERNEQSALIERAVDQLSDTYREVIVL
                     RHWLDLSYDEIAEALHVPAKTVKSRLFSARARLGEILAAMGVQST"
     gene            616..1371
                     /locus_tag="VIU37_12615"
     CDS             616..1371
                     /locus_tag="VIU37_12615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014850.1"
                     /translation="MSDTLDDLIQRALEGEASPTERARLEARMASDPSARGRWDELSR
                     TFEALRAARPVEPPAGMRDEVLSAIRGAAPAWAPASARAGRTAPAKPIALSRRPALPW
                     LRFALPAAAGLVAVVFAFASWQGRLHDAGDDLASGAMSGAANLVRIGPGESAVMVHWS
                     PSPTGFQLRIQAGDAPVRVVLETLTAGALVSLTPGAPTPSPRVEANLPANALVIAEGT
                     APDTQATVRVSVTLPDGRLAAGEVRLRGLKQPR"
     gene            1484..>1990
                     /locus_tag="VIU37_12620"
     CDS             1484..>1990
                     /locus_tag="VIU37_12620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014851.1"
                     /translation="MASNRNSIVAGVIVLAAAVGFLAWKGVIGYPPKGTEGSIGAAKR
                     YQAQQITANDVELNDPQTQAFIQSDLFHRMQTDAEFRKAVVDGGLDRFVTAQARATDL
                     ARSARDVGKAADAAKLTDAAARALDVAKMADALASVKDFAKMVDADKMVVDLSKASLD
                     LARMTDVAK"
BASE COUNT          301 a          741 c          676 g          272 t
ORIGIN      
        1 cgacccgtcg cgcccggaca gcgttccccg cggccatctc cccccttcca gcgcccaact
       61 ccgggctgac aggcgtgtac tgatggacga cgaagcactg gtccagaggt gcctctcggg
      121 tgacaccgag gccttcggcg aactggtgag ccgctacgag cggcccctct tcaacgtggc
      181 cctgcgcatg ctgcgggacc gcgaggaagc ccgggacgcg acgcagaaca ccttcgtgaa
      241 ggcgtggcag cacctcgacc agttcgatcg gagtcggcgg ttcttctcgt ggctgtaccg
      301 gatcgccgtc aacgaatcgc tgaaccgggc gacccggcgg aagcaggccg agtccctgga
      361 cgagaacctc gtcgaccggg gtcactcccc ggccgaacgg gccgaacgaa acgagcagtc
      421 cgcgctcatc gagcgcgcgg tggaccagct ttcggatacc taccgggagg tcatcgtgct
      481 gaggcactgg ctcgacctgt cgtacgacga gatcgccgag gcgctccacg tgccggcgaa
      541 gaccgtcaag tcgcgcctgt tctccgctcg cgcccggctc ggcgagatcc tggccgccat
      601 gggggtgcag tccacatgag cgacacgctc gacgacctga tccagcgggc gctggaaggt
      661 gaagcatcgc ccacggagcg cgcgcgcctc gaagcgcgca tggcgagcga cccttcggcc
      721 cgcggccgct gggacgagtt gtcgaggacg ttcgaggctc tccgggcggc acgtccggtg
      781 gagccgccgg ccggcatgcg cgacgaggtg ctgagcgcca ttcgcggggc tgcccccgcg
      841 tgggcgccgg cctcggcgcg cgccggacgg acggcgcccg cgaagccgat cgcgctctcg
      901 cgccggcccg ccctcccgtg gctccgcttc gcgctcccgg ccgccgccgg cctcgtcgcg
      961 gtggtcttcg ccttcgcgag ctggcagggc cggctccacg acgccgggga cgatctcgcc
     1021 agcggcgcca tgtcgggcgc cgcgaatctc gtccgcatcg gtcccggcga gagcgcggtg
     1081 atggtgcact ggagcccgtc cccgaccggc ttccagctcc ggatccaggc cggcgacgcg
     1141 cccgttcgcg tcgtcctcga gaccctgacc gccggcgccc tcgtgagcct cactccgggc
     1201 gcccccacgc cttccccgcg ggtggaagcg aacctgcccg cgaatgccct cgtcatcgcc
     1261 gagggcacgg cccccgacac ccaggccacc gttcgcgtga gcgtcaccct ccccgatggc
     1321 cgcctggcgg ccggggaagt ccggctgcgc ggcttgaagc agccccgctg aactgaagaa
     1381 gtctggtccc gccgcccaac ttcggctgca tcggcgggtc attctcgcag ccaccgtcaa
     1441 ggaaacgtcc gttcgagtcc cgtttcagga ggagggtcaa tccatggcca gtaaccgcaa
     1501 ttcgatcgtc gccggggtca tcgtcctggc agccgccgtc gggttcctcg cctggaaggg
     1561 cgtcatcggc tacccgccga agggcaccga gggctcgatc ggggccgcga agcgctacca
     1621 ggcgcagcag atcacggcga acgacgtcga gctgaacgac ccgcagaccc aggcgttcat
     1681 ccagagcgac ctcttccacc gaatgcagac ggacgccgag ttccgcaagg ccgtcgtgga
     1741 cggcgggctc gaccgcttcg tcaccgccca ggcccgcgcc accgacctcg cccgctccgc
     1801 gcgcgacgtc ggcaaggcgg ccgacgccgc gaagctgacc gacgccgcgg ccagggcgct
     1861 cgacgtcgcg aagatggccg acgcgctcgc cagcgtgaag gacttcgcga agatggtcga
     1921 cgccgacaag atggtggtcg acctgtcgaa ggcctcgctc gacctggcgc gcatgaccga
     1981 cgtcgccaag
//
LOCUS       DATDDI010000866         2675 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_81384, whole genome shotgun sequence.
ACCESSION   DATDDI010000866 DATDDI010000000
VERSION     DATDDI010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81384"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1527
                     /locus_tag="VIU37_12625"
     CDS             <1..1527
                     /locus_tag="VIU37_12625"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY6014852.1"
                     /translation="HGRDHITHLEIAGKRNGEITGLRVKTLANLGGRLSTIGPGIPTT
                     LYARVLSGCYKIPNVYAEVTGVYTNTVFVDAYRGAGRPEATYVIERAMDLFAAEIGMD
                     RAEIRRRNFIQPDQFPYDNPSGLGTAVNGEKIFIDSGNYEPAMDKALATVGYADMAAK
                     KAEAKARGKLLGVGLSTYIEVCGVAPSKWIGAVGEGWGAAMWESANIKVHLTGKIIAT
                     VGTQPQGQGHETTYAQVIAHELGVPMEDVIVQHSDTQGTPFGYGSYGSRTSSVGMTAA
                     VKAAAKVREKARRYAAHMLEANVEDIEVDGASYRVKGSPDKVKTIQEIAFAIDLGFSL
                     PPDMEPYLDETAYHDTTNCTWPFGTHIAVVEIDEESGKVDLVRYVAVDDVGKKINPMI
                     VDGHLHGGIAQGVGQALWEGAIYGDDGQLQSGSLLDYALPRASWLPNLELDETVTPSP
                     VNPLGVKGVGEAGAIASTAAVANAVVDALRPLGIRHLDMPYTAQTVWRAIQGSKGGQA
                     "
     gene            1524..2387
                     /locus_tag="VIU37_12630"
     CDS             1524..2387
                     /locus_tag="VIU37_12630"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEY6014853.1"
                     /translation="MIPAAFDYQRSATLDEALRAIAGSGGTVKLLAGGQSLLPLLKLR
                     LGSADRLIDIGRLGELKGVRRLPDGRLAIGAMTTYSELADSSARHYGLVADALPTIGD
                     VQVRNRGTVGGAIAHADPASDLAACLLALDAEIVARSVRGERTIPVDGFFTGPFSTAL
                     ATDELITEVRLPGPRDDAGSAYASLEQPASGYAMVGAAAVVFVAGDGSIAGANVALTG
                     VGPHPYRARAVEAALAGSDRSAASIAAAAAHAADGIDVVGDIHAGREYRTAMAAVYTR
                     RAIEAALARLG"
     gene            2404..>2675
                     /locus_tag="VIU37_12635"
     CDS             2404..>2675
                     /locus_tag="VIU37_12635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014854.1"
                     /translation="MRVERVTPGRRPPARLAGAVLTRDLAIGGARWAKGRRLSADDLL
                     AIAGAEPAEPVSVLIPDSNELHEDEAALRLAAAVGGPGLRSRGPVQ"
BASE COUNT          408 a          965 c          952 g          350 t
ORIGIN      
        1 cacgggcgcg accacatcac acatctcgag atcgcaggca agcgcaacgg cgagatcacc
       61 gggctgcggg tcaagacgct ggccaacctg ggcggccggc tgtcgaccat cggcccgggc
      121 atcccgacga cgctctacgc ccgcgtcctg agcggctgct acaagatccc caacgtctac
      181 gccgaggtca ccggcgtcta caccaacacg gtcttcgtcg acgcctaccg cggcgccggg
      241 cggccggagg cgacctacgt catcgagcgg gcgatggacc tgttcgccgc cgagatcggg
      301 atggaccgtg ccgagatccg gcgccggaac ttcatccagc ccgaccagtt cccgtacgac
      361 aacccgtccg ggctcgggac ggcggtcaac ggcgagaaga tcttcatcga ttcgggcaac
      421 tacgagccgg ccatggacaa ggcgctggcc acggtcggtt acgccgacat ggccgcgaag
      481 aaggccgagg cgaaggctcg cggcaagctc ctcggcgtcg gcctgtcgac ctacatcgag
      541 gtctgcgggg tcgcgccatc gaagtggatc ggcgcggtcg gcgagggctg gggcgccgcg
      601 atgtgggagt cggccaacat caaggtccac ctcaccggca agatcatcgc caccgtcggc
      661 acccagcccc agggtcaggg tcacgagacg acgtacgcgc aggtgatcgc ccacgagctc
      721 ggcgtgccga tggaggacgt catcgtccag cactccgaca cgcagggcac gccgttcggc
      781 tacggctcgt atggcagccg gaccagctcc gtcgggatga ccgcggcggt caaggcggcg
      841 gccaaggtcc gcgagaaggc ccgccgctac gccgcgcaca tgctcgaggc gaacgtcgag
      901 gacatcgagg tcgacggcgc cagctaccgg gtcaagggct cccccgacaa ggtcaagacg
      961 atccaggaga tcgccttcgc gatcgacctc gggttcagcc tcccgcccga catggagccg
     1021 tacctcgacg agacggccta ccacgacacg acgaactgca cgtggccgtt cgggacgcac
     1081 atcgcggtcg tcgagatcga cgaggagagc ggcaaggtcg acctcgtccg ctacgtcgcg
     1141 gtcgacgacg tcggcaagaa gatcaacccg atgatcgtcg acggccatct ccacggcggg
     1201 atcgcccagg gtgtcggcca ggcgctctgg gagggcgcca tctacggcga cgacggccag
     1261 ctccagtcgg gctcgctgct cgactacgca ttgccgcgag cgtcgtggct gccgaacctc
     1321 gagctggacg agacggtgac gccgtcgccg gtcaacccac tcggggtcaa gggcgtcggc
     1381 gaggccggcg cgatcgccag caccgcggcg gtcgccaatg ccgtcgtcga cgcgctccgg
     1441 ccgctgggca tccgccatct cgacatgccg tataccgccc agaccgtgtg gcgcgcgatc
     1501 cagggctcga agggaggcca ggcgtgatcc ccgcggcatt cgactaccag cgctcggcca
     1561 cgctcgacga ggcgcttcgg gcgatcgccg ggtccggcgg caccgtcaag ctgctggccg
     1621 gcggccagag cctcctgccg ctgctcaagc tccggctcgg gtcggccgac cggctcatcg
     1681 acatcggccg cctgggtgag ctcaagggcg tccggcggct gcccgacggg cggctggcca
     1741 tcggggcgat gaccacgtac agcgagctcg ccgactcgtc cgcgcggcat tacggcctcg
     1801 tggccgacgc gctgccgacg atcggcgacg tgcaggtgcg gaaccgcggc acggtcgggg
     1861 gagcgatcgc gcatgccgac ccggcctcgg atctggcggc ctgtctcctc gcgctcgacg
     1921 cggagatcgt cgctcgctcc gtccgcggcg agcggacgat ccccgtggac gggttcttca
     1981 cgggtccgtt ctcgaccgcg ctcgcgaccg acgagctgat caccgaggtc cggctgcccg
     2041 gcccgcgcga cgacgccggg tccgcgtacg cgtcgctgga gcaaccggcg tcgggctatg
     2101 cgatggtcgg agcggccgcg gtcgtgttcg tcgccggaga tggctcgatc gcgggtgcca
     2161 acgtcgccct gaccggcgtc ggaccgcatc cgtaccgggc ccgggccgtg gaagcggcac
     2221 tcgccggttc ggaccgttcc gccgcatcca tcgccgcggc cgccgcgcac gccgcggatg
     2281 ggatcgacgt cgtcggcgac atccacgcgg gccgggagta ccgtacggcg atggccgccg
     2341 tctacacgcg acgcgcgatc gaggccgccc tcgcccgact cggctgagcg ggccggtcac
     2401 cgcgtgcgtg tcgagcgggt caccccgggc cggcgcccgc ccgctcgact ggccggcgcg
     2461 gtcctgacgc gcgacctcgc gatcggcggt gcccggtggg cgaagggccg gcggctgtcc
     2521 gccgacgacc tgctggcgat cgccggagcc gagcccgcgg aaccggtcag cgtcctcatc
     2581 ccggactcga acgagctcca cgaggacgag gccgcgctgc ggctggccgc cgcggtcggc
     2641 ggtcccggac tccggtcgcg tggcccggtg cagag
//
LOCUS       DATDDI010000867         1545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_663739, whole genome shotgun sequence.
ACCESSION   DATDDI010000867 DATDDI010000000
VERSION     DATDDI010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_663739"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1278
                     /gene="secD"
                     /locus_tag="VIU37_12640"
     CDS             <1..1278
                     /gene="secD"
                     /locus_tag="VIU37_12640"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEY6014855.1"
                     /translation="LETKLGLDLRGGLRLEYQVLPANGKAPTRDDLNIMRQIVINRID
                     KSGVAEPQVVIQGQDRIIVEMPGVQNAQQIRDLVGTTGRLDFVPLGQTQMSQDQEVGQ
                     QVLDTKCSDTVTEMCVLFSGDQVAAANIGSSQTGQRTVQFTLTGAGRELFANYTADHV
                     GDYFAIVLDGKVISAPVIKNAIPGGNVEISQDSTIGGYPLKEATELVTVLQFGSLPFP
                     IEELSNQTISPTLGEQFFSQSLLAGAVGILLVMGFMLIYYRLPGAIASFALIYYTLVV
                     LAIFRLIPVTLTLAGIAGFVLSIGMAVDANILIFERMKEEMRVGKSLPAAVEAGFGRA
                     WNSILDSNVSSLITATILYLFGSSTIRGFALVLILGVLTSMFSAIVVTRTILRTVVKQ
                     GWARSASRYGMRDEEFAAVGPRPSARREARARV"
     gene            1271..>1545
                     /locus_tag="VIU37_12645"
     CDS             1271..>1545
                     /locus_tag="VIU37_12645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014856.1"
                     /translation="MFDVIGKRRWFYLFSLIITIPGLFFILLTPTGNGGLQFTIDYTG
                     GTRWEVRFQDPAVTPDQVKGVFAAQGLEASAVATGSGFIEIKTQQIVG"
BASE COUNT          247 a          554 c          483 g          261 t
ORIGIN      
        1 cttgagacga agctcggcct cgacctgcgc ggcggactgc gcctcgagta ccaggtgctg
       61 ccggcgaacg gcaaggcgcc gacgcgtgac gacctcaaca tcatgcggca gatcgtcatc
      121 aaccggatcg acaagtccgg cgtcgccgag ccccaagtcg tcatccaggg ccaggaccgg
      181 atcatcgtcg agatgccggg cgtccagaac gcccagcaga tccgtgacct cgtcggcacc
      241 accggccgcc tcgacttcgt gccgctgggt cagacccaga tgtcgcagga ccaggaggtc
      301 gggcagcagg tcctcgacac caagtgctcc gacaccgtca cggagatgtg cgtcctgttc
      361 tccggcgacc aggtcgccgc cgcgaacatc gggtccagcc agaccggcca gcgcaccgtc
      421 cagttcacgc tgaccggggc cggcagggag ctgttcgcga actacaccgc ggaccacgtg
      481 ggcgactact tcgcgatcgt cctcgacggc aaggtcatct cggccccggt gatcaagaac
      541 gcgatccccg gcggcaacgt ggagatcagc caggactcga cgatcggcgg ctatccgctc
      601 aaggaggcga ccgagctcgt caccgtcctc cagttcggct cgctgccatt cccgatcgag
      661 gagctctcga accagacgat cagcccgacg ctcggcgagc agttcttcag ccagagcctc
      721 ctggccggtg cggtcgggat cctgctcgtc atgggcttca tgctcatcta ctaccggctg
      781 ccgggcgcga tcgcgagctt cgcgctcatc tactacacgc tcgtggtcct cgcgatcttc
      841 cggctcatcc cggtcacgct gaccctcgcc ggcatcgcgg gcttcgtcct gtcgatcggc
      901 atggccgtcg acgcgaacat cctgatcttc gagcggatga aggaggagat gcgggtcggc
      961 aagtcgctgc ccgccgcggt cgaggccggc ttcggccggg cctggaactc gatcctcgac
     1021 tcgaacgtgt cgagcctgat caccgccacg atcctgtacc tgttcggctc gtcgacgatc
     1081 cgcggcttcg ccctcgtcct gatcctcggc gtcctcacct cgatgttcag cgcgatcgtc
     1141 gtcactcgca cgatcctccg caccgtggtc aagcaggggt gggctcggtc ggcgtcccgc
     1201 tacggcatgc gcgacgagga gttcgctgcc gtcgggccac gcccctcggc tcggcgagag
     1261 gcgcgcgcgc gtgtttgacg tcatcggcaa gcggcgctgg ttctacctct tctcgctgat
     1321 catcaccatc cccggcctgt tcttcatcct gctgaccccg accggcaacg gcggcctcca
     1381 gttcacgatc gactacaccg gcggcacccg ctgggaggtc cgcttccagg acccggcggt
     1441 cacgcccgac caggtgaagg gcgtcttcgc ggcgcaggga ctcgaggcca gcgcggtcgc
     1501 gaccggctcc ggcttcatcg agatcaagac gcagcagatc gtcgg
//
LOCUS       DATDDI010000868         1629 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_705557, whole genome shotgun sequence.
ACCESSION   DATDDI010000868 DATDDI010000000
VERSION     DATDDI010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_705557"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..765)
                     /locus_tag="VIU37_12650"
     CDS             complement(<1..765)
                     /locus_tag="VIU37_12650"
                     /inference="COORDINATES: protein motif:HMM:TIGR01581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014857.1"
                     /translation="MIRSLAGDAGAATEPGDWPSGASAPRTNHRGARSLIVVAGLFAL
                     FLGLPVATLVAHAFLDGALGRALGSVAVLAALRLSLVTTAISLVATVALGLPLAFVLA
                     RRRFRGKGWIEAVVDLPIVLPPAVAGLALLLVFGRRGLLATPLDILGLSIPFTTIAVV
                     LAQTFVSAPFFIRSARTGLAGVDRDLEDAARVDGASELQLFRAVTVPLAGAALAGGLV
                     MSWARALGEFGATIMFAGNVTGRTQTLPLVVYSEFQG"
     gene            complement(762..>1629)
                     /gene="modA"
                     /locus_tag="VIU37_12655"
     CDS             complement(762..>1629)
                     /gene="modA"
                     /locus_tag="VIU37_12655"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY6014858.1"
                     /translation="GHQRHRRDPVRPGIAGLRLPRRVPFLALVAVLSACSGTATGAAP
                     SPAGSVPPAVNLTIYAAASLSRALDAAKAAYEAATPGVTLTVSTDSSSALETQIEQGA
                     PADVFLSADTANPRKLVDAGLADGTPVTFARNDLTIVVPAGNPAGITSPADLARAGVK
                     IIAAGDTVPITTYAAQLVRNLSREPGYPADFVTAYEANVASKEDNVRAVVAKIELGEG
                     DAAIVYATDAKASGKVAMIEVPDAANVPATYDGVVIGTSGRAAAARAFLDWFAGAGGR
                     PILAGLGFLPPS"
BASE COUNT          257 a          590 c          593 g          189 t
ORIGIN      
        1 gccctggaac tccgagtaga cgacgagcgg gagcgtctgc gtccgacccg tgacattgcc
       61 cgcgaacatg atcgtcgccc cgaactcgcc cagcgcccgc gcccacgaca tcaccagccc
      121 tccagccagt gccgcaccgg cgagcggcac ggtcacggct cggaacagct ggagctcgga
      181 ggccccgtcg acgcgcgccg cgtcctcgag atcgcgatcg acgcccgcca ggcccgtccg
      241 cgccgaccgg atgaagaacg gcgccgacac gaacgtctgc gcgaggacga cggcgatggt
      301 cgtgaacggg atcgagaggc cgaggatgtc gagcggcgtc gccagcaggc cccggcgacc
      361 gaagacgagg agcagcgcca ggccggcgac cgccggcggg agcacgatcg gaaggtcgac
      421 cacggcctcg atccagcctt tcccacggaa gcgacggcgg gcgagcacga acgccagcgg
      481 caggccgagg gcgaccgtcg ccaccaggct gatcgcggtc gtgaccaggc tcaagcgcag
      541 cgccgcgagc acggccacgg aacccagcgc ccgcccgagc gccccatcga ggaacgcgtg
      601 cgccacgagc gtcgccaccg gcagccccag gaacagcgcg aacaggcccg ccaccacgat
      661 gagcgaacgg gcgccgcggt ggttcgtccg tggcgccgag gcacccgacg gccagtcgcc
      721 gggttccgtg gcggctccgg catcgccggc cagggaccgg atcacgaggg tggcaggaac
      781 ccgaggccgg ccaggatcgg ccggcccccc gcgcccgcga accagtcgag gaacgccctc
      841 gccgccgcgg cccggccgga tgtcccgatg accacgccgt cgtaggtggc gggaacgttg
      901 gcggcgtccg gcacctcgat catggcgacc ttgccggacg ccttggcgtc ggtcgcgtag
      961 acgatggcgg cgtcaccctc gccgagctcg atcttggcga ccaccgccct gacgttgtcc
     1021 tccttcgagg ccacgttggc ctcataggcc gtgacgaagt cggccgggta gccgggctcc
     1081 ctcgacaggt tccggaccag ttgggcggcg tacgtcgtga tcggcaccgt gtcgccggcg
     1141 gcgatgatct tgaccccggc tctcgcgaga tccgcgggcg aggtgatccc cgcggggttg
     1201 ccggccggca cgacgatcgt caggtcgttc cgggcgaacg tgacgggggt gccgtcggcc
     1261 aggccggcgt cgacgagctt ccttgggttc gccgtgtccg ccgacaggaa cacgtccgcc
     1321 ggcgcgccct gctcgatctg cgtctccagc gccgacgagg aatcggtcga gaccgtcagc
     1381 gtcacgccgg gggtcgccgc ttcgtatgcg gcctttgccg catcgagcgc tcgcgacagt
     1441 gacgcagcgg cgtagatcgt gaggttgacg gcgggtggga cggaccccgc cggcgacggg
     1501 gccgcgcccg tggccgtgcc ggagcacgcc gacaggacgg cgaccagggc caggaacgga
     1561 acccgacgag ggagcctcaa ccccgcgatt cccgggcgga cgggatctcg acgatgacgt
     1621 tggtggcct
//
LOCUS       DATDDI010000869         7184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_330818, whole genome shotgun sequence.
ACCESSION   DATDDI010000869 DATDDI010000000
VERSION     DATDDI010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 7184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7184
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330818"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..469
                     /locus_tag="VIU37_12660"
     CDS             <1..469
                     /locus_tag="VIU37_12660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014859.1"
                     /translation="NFVFETGLGKVASYVADVLAGGNDAIVWIPLSQSGTAEQSEGLT
                     TMAQVEANANFAEQAHASWGRITQDETGDGLAVAFDTTNNRVECDSNDLVWASPDTGN
                     NTTGVIACYDPDTTSGDDTTLVPLVHLDMAVTANDQQVTFQFNAEGWYNATRS"
     gene            486..3068
                     /locus_tag="VIU37_12665"
     CDS             486..3068
                     /locus_tag="VIU37_12665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014860.1"
                     /translation="MAFPTIPTGGRVLSRVQADASTTRTFPDLSSLTKGNNDLLIAII
                     VAYQSASPATAHNAFSGWGGGFTEFVDRMTTPGSTMAIGVAYKRSTGSETGTFTVTQA
                     AAVTGHAAMFLLSIPGAHITTAPEGGGIVDGTAAAANIAALNPAGWDAEDTLWIAVGA
                     SGETSTSGAYDGLSAAPANYTDLAQTGNSGDVLGAVEGGVAFRQLNAASEDPATFTVD
                     LSAERNSALLLAVRPIAPIDAGVASEGDSAPKGEAVIGPAVRHFEGAATGDLRTDPTP
                     LATLNQGAFSYAALMRMDPASAYTALALVNVASGASTGYMYVLQSGVPNIQIKDGAGA
                     ANNVTPPTLKVPMNEWVILGVSKASGVATPRFHLWTKSGGWTHEDASATLGNAVESAT
                     IAEHAYTGFIWTKGEKAITAAWAAALSDAAFAALSTNFRTSDWLGHSTPPVAAWLFNQ
                     PSTADPVQDATNGGSDQSYLTGTSVVPHGPINGSGTPFTFGQSISAGVASEADAALGG
                     SLPQPQLVEAGVASETDASLGGSIAQPQPPVAGGLGAEADAGLAGSIVQPQSPLAGEV
                     AFEADAAPAGQIASMPQTVEGGVAGEADTSLGGTITQPQAPVAGGVGAEADAGLAGAL
                     IQPQPPVAGQPAAEADAALAGAMLQAQPPLAAGTAGETDAGLAGSIRQPQAVAGGLAS
                     EADAGLAGSITQPQAPVVGLAAPETDSAPVGSVRQIGGVASEADAAIGGAPVVGSMQV
                     VQAGVAVEVDAAPSGVVVNPQAPLAGGRASEADAAIAGLVGQAQRISAAAAAEVDRAP
                     DGVVGQAQLYLAAIGAETDGAPVGTPIVVPLVWTARMRTFERTDRAVSSETGPRARVS
                     ERLP"
     gene            3065..3364
                     /locus_tag="VIU37_12670"
     CDS             3065..3364
                     /locus_tag="VIU37_12670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014861.1"
                     /translation="MKTYERGQQVILRVELFDQDDAPVDEATLTLTVRSPTDHRDEGA
                     SFAVGDFDHVATGIYEYPLDLDERGLYVYRWASSGTVTLAEERRIYSESAFAAVP"
     gene            3364..4053
                     /locus_tag="VIU37_12675"
     CDS             3364..4053
                     /locus_tag="VIU37_12675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014862.1"
                     /translation="MYPDLDEILALSTSESLLTREREVQESIYTMAIAAIERHCGQVF
                     TSEGDGSEGPVTRTFDGNGSRILYLDRRLSSLDSLAMNGNAIDADNFTVSPRHDRIAW
                     ATTNFGSWASRVVAEMEFGARLSFFDPGLDNIAITGVWGWTDAEFPVLLTDAILLCVE
                     DYAAIEANALTETIAVARMQGVGSISQGDLSIDLTNRELDLSRRVKRVLASKTGGEPL
                     VFPSGSGAVVP"
     gene            4053..4340
                     /locus_tag="VIU37_12680"
     CDS             4053..4340
                     /locus_tag="VIU37_12680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014863.1"
                     /translation="MLPFDQEVEIRKSPDGEVLATVDGHIERAPSPGETQRGERYDWT
                     GQLHLDAADPLLGQANREVVVNETRYRVVDSIEYLAVPHIRVALLELRPGG"
     gene            4333..4821
                     /locus_tag="VIU37_12685"
     CDS             4333..4821
                     /locus_tag="VIU37_12685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014864.1"
                     /translation="MAESIYRVSVRGARNLAGGFARGAREVQSVLVDEFDDSSTTLTR
                     IAREAAPRDTGRLHAGITASVSSGGARVVVTLYSTAVSDEGFPYTDVTRFGHADGIYP
                     VRAKALRFEPGGRGSGFIFRKFTRGYHPAHDWVEDLNAGAEVEMDRLEQRVGRAIESR
                     IL"
     gene            4841..5305
                     /locus_tag="VIU37_12690"
     CDS             4841..5305
                     /locus_tag="VIU37_12690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014865.1"
                     /translation="MNERTVAEALAAYFEDEIEIATTYGYPISNSDGPLPDAVCFCRE
                     KRLTRDPGEIAEIGLEQIWVRLFTCEVSIMVEVAEQTEAAADAADAELRGYGAAVEDS
                     VWADQSLGDRVPYCSPAITCDYSTPFIRREDGVTGRLGIITLLVAEPVGHPE"
     gene            5395..6000
                     /locus_tag="VIU37_12695"
     CDS             5395..6000
                     /locus_tag="VIU37_12695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014866.1"
                     /translation="MLLAPDSEPVPADLSEVVSLDSPYSAQGSWFDVGAAKSSSTYTR
                     GMDSEGIEIQQETGTIFDEITNTNRSFGLSIAEFTPELVQIVENSPDPEDVGAMDRLP
                     LTSIVDLEKYRLCAVGVRKKASGVVTESGGRQRGRLLAVVLNQVTVAADDVDAEFEKG
                     SLGEMQVTFVAYPDPDVDAEDGDWGAWYFEEGGPSGSGGSS"
     gene            6036..6572
                     /locus_tag="VIU37_12700"
     CDS             6036..6572
                     /locus_tag="VIU37_12700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014867.1"
                     /translation="MAETTGITVHLGEETYRIVPQRLGRIERKLRVVFEAFGGGDAEA
                     AAQMDPAVLHEALQVFIPDLMPEWKLRGLPGEGEEYVEARDHSPTVPELIEAIEAIFT
                     VNGGDRLARFFGKFIDPKVIEATITARLAAWASEDSQNSPQPNGGSGSTTSTTRIPIS
                     PGQSEPEPAAPTPIRPAG"
     gene            6605..6784
                     /locus_tag="VIU37_12705"
     CDS             6605..6784
                     /locus_tag="VIU37_12705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014868.1"
                     /translation="MLDLIEGRDERRATERRQGGYDLAMAVWDTKSLAEIRPALSVAS
                     AATEYRWWKGDDQPE"
     gene            6797..>7184
                     /locus_tag="VIU37_12710"
     CDS             6797..>7184
                     /locus_tag="VIU37_12710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014869.1"
                     /translation="MASFREIILRTVGDGESARRDLKQTAAELEAFDRIKAEASAELD
                     TSKLKAQLKEAQARLKELSAAEATPEVDLATAKATGEIKALQARLTELAAKHYEVEVD
                     IDPKGLVETRLAAMAAQTDKGAGFLSR"
BASE COUNT         1135 a         2537 c         2456 g         1056 t
ORIGIN      
        1 gaacttcgtg ttcgagaccg ggctgggcaa ggtggcgtcc tacgtcgccg acgtgctggc
       61 cggtgggaac gatgcgatcg tctggattcc gctgagccag tccggcaccg ctgagcaatc
      121 ggaggggctg accacgatgg cgcaggtgga ggccaatgcg aacttcgccg agcaggctca
      181 cgcctcatgg ggccggatca ctcaggacga gaccggcgat ggtctcgcgg tcgccttcga
      241 cacgaccaac aaccgggtcg agtgcgactc gaacgatctc gtctgggcga gccccgacac
      301 cggcaacaac acgaccggcg taatcgcctg ctacgacccg gacacgacct cgggcgacga
      361 caccaccctt gtccccctcg ttcacttgga tatggcggtc accgcgaacg atcaacaggt
      421 gaccttccag ttcaatgccg agggctggta caacgcgacg cgctcgtagg tagagaggag
      481 ggctgatggc cttcccgacg atccccaccg gagggcgagt tctctcgcgc gtccaagccg
      541 atgcgagcac cacccgcacc tttcccgacc tctcctcgct gaccaagggc aacaacgatc
      601 tcctgatcgc gatcatcgtc gcgtatcagt cggcctcgcc agcgacggct cacaacgctt
      661 tctcgggctg gggcggcggc ttcaccgagt tcgtcgatcg gatgacgacg ccgggctcga
      721 cgatggcgat cggcgtcgcc tacaagcgga gcaccggctc ggagaccggg acgttcacgg
      781 tgacgcaggc cgcggcggtc accgggcacg ccgcgatgtt cctgctctcg atccccggcg
      841 cccacatcac gacggcgccg gagggcggcg gaatcgtgga cgggaccgct gcggcggcca
      901 acatcgcggc cctcaacccg gcgggctggg atgccgagga cacgctctgg atcgcggtcg
      961 gcgccagcgg cgagacctcg acctccggcg cctatgacgg gctctccgcg gccccggcca
     1021 actacaccga cctcgcgcag accggcaact ccggcgacgt gctcggggcg gtcgagggcg
     1081 gcgtcgcctt ccgccagcta aacgccgcct ccgaagaccc ggccaccttc acggtcgatc
     1141 tctccgccga gcggaactcg gcgctcctac tcgccgtgcg accgatcgcg ccgatcgacg
     1201 ccggggtggc gagcgagggc gactcggcgc cgaagggtga ggccgtgatc ggcccggcgg
     1261 tgcgccactt cgagggcgct gctaccggcg atctccgcac cgacccgacg ccgctggcga
     1321 ctctcaatca gggcgctttc agctacgcgg cgctgatgcg gatggacccg gcgagcgcgt
     1381 acacggcgct cgcgctcgtg aacgtcgcca gcggcgccag caccggctac atgtacgtcc
     1441 tgcaatccgg cgtgccgaac attcagatca aggacggcgc cggggccgcc aacaacgtca
     1501 ccccgccgac cttgaaggtg ccgatgaacg agtgggtcat cctcggcgtc agcaaggcgt
     1561 cgggtgtcgc gaccccgcgc tttcacctct ggacaaagag cggcggctgg acccacgagg
     1621 acgccagcgc cacgctcggc aacgccgtcg agtcggcgac catcgcagag cacgcctaca
     1681 cgggattcat ctggacaaag ggcgagaaag cgatcaccgc tgcctgggcc gcggctctca
     1741 gcgatgccgc cttcgcggcg ctgagtacga acttccgcac gagcgactgg ctcggccact
     1801 cgacgccgcc ggtcgccgcc tggcttttca atcagccgag caccgccgat ccggttcaag
     1861 acgcgacgaa tggcggctcc gatcagagct acctcaccgg aacgtcggtg gtcccgcacg
     1921 ggccgatcaa cggcagcggc acgccgttca ccttcggcca gtcgatctcg gctggcgtcg
     1981 cgtccgaggc cgacgcggcg ctgggcgggt cgctgccgca gccccagttg gtcgaggcgg
     2041 gtgtcgcctc cgagaccgac gcttcgctcg ggggctcgat cgcgcagccg cagcccccgg
     2101 tggctggcgg gctcggggct gaggcggatg ccgggctcgc cgggtcgatc gtgcaacctc
     2161 agtcgcctct cgccggggag gtggcgttcg aggccgacgc cgctccggcg ggccagatcg
     2221 cctcgatgcc ccagacggtc gagggcggcg tcgcgggcga ggcggacact tcgctcggcg
     2281 gaacgatcac tcagccgcag gcgcccgtcg cgggaggtgt cggggccgag gccgacgccg
     2341 gattggctgg cgctctcatt cagccgcagc ccccggtcgc cgggcaaccg gcggcggagg
     2401 ccgacgccgc tctcgcgggc gcgatgctcc aagctcagcc gccgctcgcc gcggggaccg
     2461 cgggcgaaac cgacgccggg ctggcaggct cgatccgcca gccgcaggcg gtcgccggag
     2521 ggctggcctc cgaagcggac gccggactgg ccgggtcgat cacgcagccg caggcgccgg
     2581 tcgtcggcct ggcggcaccg gagactgata gcgctccggt cggatcagtt cgccagatcg
     2641 ggggggtcgc ctccgaggcc gacgcagcga tcggcggtgc gccggtcgtc ggctcgatgc
     2701 aggttgtcca ggccggggtc gccgtcgagg tggacgccgc cccgagcggc gtggtcgtca
     2761 atccgcaggc cccgctcgca ggcgggagag cttccgaggc ggacgccgcg atcgccgggc
     2821 tcgtcggcca ggcgcagcgg atcagcgccg ccgccgccgc ggaggtcgat cgagcgccgg
     2881 atggcgtggt cggccaggcg cagctttacc tcgcggcgat cggcgccgag accgatgggg
     2941 cgccggtcgg gacgccgatc gtggtgcccc tcgtctggac cgcgcggatg cggaccttcg
     3001 agcgcaccga ccgagcggtg tcgagtgaga ccggccctcg cgctagggtg agcgagaggc
     3061 tcccatgaag acctacgagc gcggccaaca ggtgatcctt cgggtcgagc tattcgacca
     3121 agacgacgcg cccgtggacg aggcgacgct gacgctgacg gtgcgctcgc cgaccgatca
     3181 ccgcgacgag ggcgcgagct tcgccgtcgg cgacttcgat cacgtcgcca ccggcatcta
     3241 cgagtacccg ctcgacctcg acgagcgcgg cctctacgtc taccgctggg cctcctccgg
     3301 cacggtgacg ctggccgagg agcgtcgcat ctactccgag tcggccttcg cggcggtgcc
     3361 ctgatgtacc cggacctcga cgagatcctc gcgctctcca cctccgagtc gctgctcacg
     3421 cgcgagcgcg aggtgcaaga gtcgatctac acgatggcga tcgccgcgat cgagcggcat
     3481 tgtgggcagg tgttcacctc ggagggtgac ggctcggagg ggccggtgac ccggaccttc
     3541 gacggcaacg gcagccgcat cctctacctc gaccggcgcc tctcctcgct cgactcgctg
     3601 gcgatgaacg gcaacgcgat cgacgccgac aacttcacgg tcagcccccg ccacgaccgg
     3661 atcgcgtggg ccactaccaa cttcggctcg tgggccagcc gcgtcgtcgc cgagatggag
     3721 ttcggcgccc ggctctcgtt cttcgacccc ggcctcgaca acatcgcgat caccggagtc
     3781 tggggctgga ccgatgccga gtttccggtc ctgctcaccg atgcgatctt gctctgcgtc
     3841 gaggactacg ccgcgatcga ggcgaacgcg ctcaccgaga ccatcgccgt cgcccggatg
     3901 cagggagtcg gctcgatctc gcagggtgac ctctcgatcg acctgaccaa ccgcgaactt
     3961 gatctctccc gcagggtgaa acgagtgctc gcctccaaga ccggcgggga gccgctggtc
     4021 ttcccgagcg gctccggggc cgtggtgccc tagtgctgcc cttcgatcag gaggtcgaga
     4081 tccgcaagag ccccgacggc gaggtgctcg cgaccgtgga cggccatatc gagcgagccc
     4141 cgagccccgg cgagactcag cgcggggagc gctacgactg gaccggccag cttcacctcg
     4201 acgccgccga tcccctgctc gggcaggcga accgcgaggt ggtcgtgaac gagacccgct
     4261 accgagtggt ggactcgatc gagtacctgg cggtcccgca tatcagggtc gccctgctcg
     4321 aactccggcc cggtggctga gtcgatctac cgagtctcgg tgcgcggcgc ccgcaacctg
     4381 gcgggcggct tcgcccgcgg ggctcgcgag gtgcaatcgg ttctcgtgga cgagttcgac
     4441 gactcctcga ccaccctcac ccggatcgcc cgcgaggcgg cgccgcggga caccggcagg
     4501 ctccacgccg ggatcaccgc ctcggtctcc tccggcggcg cccgcgtcgt ggtcaccctc
     4561 tactccacgg cggtctccga tgagggcttc ccctacaccg acgtaacccg cttcggccat
     4621 gccgacggga tctacccggt gcgggccaag gcgctccgct tcgagccggg cgggcggggc
     4681 tcgggcttca tcttccgcaa gttcacccgc ggctaccacc cggcccacga ttgggtcgag
     4741 gatctgaacg ccggagccga ggtcgagatg gaccgcctag agcagcgggt cgggcgggcg
     4801 atcgagagcc gcatcctcta gggcgcgtag gatctcgacc gtgaacgaac gcaccgtcgc
     4861 cgaggcgctg gccgcctact tcgaggacga gatcgagatc gccaccacct acggctaccc
     4921 gatctccaac tccgacgggc cgctgcccga tgccgtctgt ttctgccgag agaaacggct
     4981 cacgcgcgac cccggcgaga tcgccgagat cggcttggag cagatatggg tccggctgtt
     5041 cacctgcgag gtctcgatca tggttgaggt cgccgagcag accgaggccg ccgccgacgc
     5101 cgccgacgcc gagcttcgcg gctacggcgc cgcggtcgag gattcggtct gggccgatca
     5161 gtccctcggg gaccgggtgc cctactgctc gcccgcgatc acctgcgact actccacccc
     5221 gttcatccgc cgcgaggatg gcgtcaccgg gcgcctcggg atcatcaccc tgctcgtcgc
     5281 cgagcccgtc ggccaccccg aatagggcga gtcaagcgcc gatctcgcta ggctcggtgc
     5341 gtggacccac tccgtccata caactcgaag aacctcgtcg tcggcgcctg gcgggtgctc
     5401 ctcgccccgg actccgagcc ggtccccgcc gatctctccg aggtggtctc gctcgattcc
     5461 ccctactcgg cgcagggctc atggttcgac gtgggggccg ccaagtcctc ctcgacctac
     5521 acgcgcggga tggactccga gggcatcgag attcagcagg agaccgggac gatcttcgac
     5581 gagatcacga acacgaaccg ctcgttcggg ctctcgatcg ccgagttcac ccccgagctt
     5641 gtccagatcg tcgagaactc gccggacccc gaagacgtgg gcgcgatgga ccgcttgccg
     5701 ctcacctcga tcgtcgatct cgaaaagtat cggctctgcg cggtcggcgt ccgcaaaaag
     5761 gcttccggcg tggtcaccga atccggtggg cgccagcgcg gtcggctgct cgcggtggtg
     5821 ctcaatcagg tcaccgtcgc cgccgacgac gtggacgccg agttcgagaa gggctcgctt
     5881 ggcgagatgc aggttacctt cgtcgcttac ccggaccccg acgtggacgc cgaagacggc
     5941 gactggggcg cctggtactt cgaggagggt ggcccctccg gctccggcgg ctcctcctag
     6001 ttccgtccgg ccagcgctgc tagtctgcgg gccgcatggc ggagaccacc ggcatcacgg
     6061 tccatctcgg agaggagacc taccgcatcg tccctcagcg cctcgggcgg atcgagcgca
     6121 agctccgggt cgtcttcgag gcgttcggag gcggcgacgc cgaagccgcg gcccagatgg
     6181 acccggcggt gctccacgag gcgctccaag tcttcatccc cgacctgatg cccgagtgga
     6241 agctgcgcgg cctgcccggc gagggcgagg agtacgtcga ggcccgtgac cactccccga
     6301 cggtccccga gttgatcgag gcgatcgagg ccatcttcac ggtgaacggc ggcgatcggc
     6361 tggcccgttt tttcggcaag ttcatagacc cgaaggtgat cgaggcgacg atcacggcga
     6421 ggctggcagc atgggcttcg gaggactctc agaactcgcc gcagccgaat gggggatcgg
     6481 gctcgacgac ttccacgact cgaatcccaa tctcgcccgg ccagtcggag ccggagccag
     6541 cggccccgac gccgatccgt ccggctggat agatccgaac cggcccggcc tcaccatccc
     6601 ccggttgctc gatctgatcg agggccgcga cgagcgccgg gcaaccgagc gccgacaagg
     6661 tggttacgac ctcgcgatgg ccgtctggga taccaagagc ctcgccgaga tcaggcccgc
     6721 tctctcggtc gcgtcggcgg ccaccgagta ccgatggtgg aaaggcgacg accaacccga
     6781 gtaggcttcg cgtgccttgg catccttccg cgagatcatc ctgcgaacgg ttggggacgg
     6841 cgagagcgct cgccgtgatc tgaaacagac cgccgccgag ctagaggcgt tcgatcggat
     6901 caaggccgag gcgagcgccg agcttgacac ctcgaagctg aaagcgcagt tgaaggaagc
     6961 gcaggcgcgg ttgaaggaac tctccgccgc cgaggcgacc cccgaggtcg atctcgccac
     7021 ggcgaaggcg accggcgaga tcaaggcgtt gcaggcccgg ctcaccgagc ttgccgcgaa
     7081 gcactacgag gtcgaggtgg atatcgaccc gaagggcctg gtcgagaccc ggctcgcggc
     7141 gatggccgct cagacggaca agggcgccgg gttcttgtcc cgct
//
LOCUS       DATDDI010000870         1857 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_497446, whole genome shotgun sequence.
ACCESSION   DATDDI010000870 DATDDI010000000
VERSION     DATDDI010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497446"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VIU37_12715"
     CDS             complement(<1..295)
                     /locus_tag="VIU37_12715"
                     /inference="COORDINATES: protein motif:HMM:NF014215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEY6014870.1"
                     /translation="MPDDTRDSVRVASTPRHEVETRLGAWIPARDGVRLSANLWLPIP
                     AAGDPVARFPAVLEMIPYGKDNWRRNADVARGTYLAQRGYALCRLDVRGTGSSG"
     gene            364..954
                     /locus_tag="VIU37_12720"
     CDS             364..954
                     /locus_tag="VIU37_12720"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY6014871.1"
                     /translation="MEDEPVIAGPWTRRARRVAYENPWITIWHDEVTRPDGEPGIYGV
                     VHFENLAVGVLALDAAGRVPLVGQHRYALDRYSWEIPEGGVPAGESALDGARRELREE
                     TGVEAAHWIELLRCDLSNSVSDEEAVLFLATGLTHGEAAPDGTESLAVRWVPFDEVLA
                     MTLDGRITDAMTILAIQRAAIARLTGADPDDPAPDA"
     gene            951..>1857
                     /locus_tag="VIU37_12725"
     CDS             951..>1857
                     /locus_tag="VIU37_12725"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY6014872.1"
                     /translation="MTAADRRDWDAIVVGLGAIGSGAAYWLSRSLGDRVLGLEQFGFD
                     HPNGASADHSRIIRLSYHRRDYVRLAKRAYETWAAVEAEAGDRIVTVTGGLDLWPADP
                     AIPKADYVESLAAEGVEFDQLDAAEVMRRWPQWQLDPDVTAVWQRQGGLADPFKGNAA
                     HRRLARAHGAALRDEIRVTGLRDAGGGDLEVETETGTFRTGRLVIAADAWTNHLLASF
                     GRSLPLQVTREQVTYFACPDPAAFAPDRFPVWIWMDDPSFYGFPTYGEAGPKAAQDCG
                     GRPVDPDRRTFERDEAAFERVTGFLE"
BASE COUNT          255 a          685 c          669 g          248 t
ORIGIN      
        1 cgcccgacga cccggtgcca cgcacgtcca gccggcacaa ggcgtagccc cgctgggcca
       61 gataggtccc gcgggcaacg tcggcgttgc gccgccagtt gtccttgccg tacgggatca
      121 tctccagcac ggcggggaac cgggcgacgg gatccccggc tgccgggatc ggcagccaca
      181 ggttggccga caggcgcacg ccgtcacgcg ccgggatcca ggcgccgagc cgtgtctcga
      241 cctcgtggcg cggagtgctc gcgacccgta ccgaatccct ggtgtcgtcc ggcatcaacg
      301 gcagtctagg cgtccgtccg cgacggccac ggccccgccc gcgtcgtgcg acgatggacc
      361 cgcatggagg acgaacccgt catcgccggc ccgtggacgc gtcgcgcgcg gcgcgtggcc
      421 tacgagaacc cctggatcac gatctggcac gacgaggtga cccggcccga cggggagccc
      481 ggcatctacg gcgtcgtcca cttcgagaac cttgccgtcg gcgtcctggc gctcgacgcg
      541 gccggtcgcg taccgctcgt cggccagcac cggtacgcgc tcgaccgcta ctcgtgggag
      601 atccccgaag gtggcgttcc ggccggcgaa tccgcgctcg acggcgcgcg acgcgagctg
      661 cgcgaggaga ccggcgtgga ggccgcgcac tggatcgagc tgctccggtg cgacctgtcg
      721 aactcggtct cggacgagga ggcggtgctg ttcctggcca ccgggctgac ccatggcgag
      781 gccgcgcccg atggcaccga atcgttggcc gttcgctggg tcccgttcga cgaggtcctg
      841 gcgatgaccc tggacggccg gatcaccgac gcgatgacga tcctcgcgat ccagcgggcg
      901 gcgatcgcgc gcctgaccgg cgccgacccg gacgacccgg cgcccgacgc gtgaccgcag
      961 ccgaccgccg cgactgggac gcgatcgtcg tcgggctcgg cgcgatcggc tcgggcgcgg
     1021 cgtactggct gagccgctcg ctgggggacc gcgtcctggg gctcgagcag ttcgggttcg
     1081 atcaccccaa cggcgcctcg gccgaccatt cgaggatcat ccggctgtcg tatcaccgcc
     1141 gcgactacgt ccggctcgcc aagcgcgcct acgagacctg ggcagcggtc gaggccgagg
     1201 cgggggaccg gatcgtgacc gtcaccggcg ggctcgacct atggccggcg gaccccgcga
     1261 tcccgaaggc cgactacgtc gagagcctcg ccgccgaggg cgtcgagttc gatcagctgg
     1321 acgccgccga ggtcatgcgc cgctggccgc aatggcagct cgatcccgac gtcaccgcgg
     1381 tctggcagcg acagggcggg ctggccgatc cgttcaaggg gaatgccgcc caccgccggc
     1441 tcgcccgggc acacggcgcc gcgctccgcg acgagattcg ggtcacgggt ctgcgggacg
     1501 ccggtggcgg cgacctcgag gtggagaccg agaccggcac cttccgcacc ggtcggctcg
     1561 tcatcgcggc cgacgcctgg acgaaccacc tgctggcgtc gttcgggcgc agcctgccgc
     1621 tccaggtgac gcgcgagcaa gtcacgtatt tcgcctgccc ggaccccgcc gcgttcgcgc
     1681 cggaccggtt ccccgtctgg atctggatgg acgacccctc cttctacgga ttcccgacct
     1741 acggcgaggc cgggcccaag gccgcgcagg actgcggcgg ccggccggtc gaccccgacc
     1801 ggcgcacgtt cgagcgtgac gaggcggcgt tcgagcgcgt gaccggcttc ctcgagc
//
LOCUS       DATDDI010000871         2530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_122501, whole genome shotgun sequence.
ACCESSION   DATDDI010000871 DATDDI010000000
VERSION     DATDDI010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122501"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..642)
                     /locus_tag="VIU37_12730"
     CDS             complement(106..642)
                     /locus_tag="VIU37_12730"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6014873.1"
                     /translation="MDHADHVALLRRAVRPGGTWADIGAGSGAFTLALADLLGAGGRI
                     VAVDRDAGALRDNAEVVRARFPEVALETVAADFTRPFDLPELDGVVAANSLHFVPRDR
                     QGAVIAGLAARLRPGGQFVVVEYDADSGNSWVPNPFRYPTWERLAAEAGLTDPRQLGR
                     VPSRFLGGIYSAAARRPG"
     gene            complement(645..>2530)
                     /locus_tag="VIU37_12735"
     CDS             complement(645..>2530)
                     /locus_tag="VIU37_12735"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF012532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEY6014874.1"
                     /translation="ITEKTLRIQADHVLHGYEAVATRLMQTIAAATPTDRVTRPLASR
                     LARDAEDLPETDRQLRRRFPDEPYRQRFGFIAERLRRTRAALTGEAAPRTGRYATPAD
                     LDTELVEIQEALVADGLGRVAWGEVAELRWQLGTFGFHLASLEIRQHAAIHAAALAAV
                     RAGRSGSTELAAGVTLDEVLATFRGIAAAQARHGVEACRRYVVSFTASATDVANVLEL
                     ARLAAGDGDAPALDVVPLFESSVALERAGSILAALLDDPAYRDGIRAHGDRQEVMLGY
                     SDSNKELGFLAGAWMLQQAQASMVETATARGVELTIFHGRGGAIGRGGGPTNRAILGL
                     APGSVDGRLKLTEQGEVIAAHYSDATIAERHLEQAVGAVLVASTPEHEARLRRAYVAG
                     APILAELAATSRAAYRALVHDDPGFAAFFRDITPIRELSDLRLGSRPAARGRRDVAPP
                     IDALRAIPWTFAWSQARINLPGWYGLGTALEAYREAHGEPGLETIARLARDWPFLSSL
                     IDNAEMSLAKADMGVARLYASLATGTGDDRRWDAIESEYRRTVAIVTRLTGHARLLDG
                     SPVLQRSVTLRNPYVDSLSELQVRLLERLRGLAPDDPERERVLLLVQLTVNGVAAGLQ
                     STG"
BASE COUNT          337 a          922 c          946 g          325 t
ORIGIN      
        1 gacctgaggc tccttgggct gaacgttgtg cgacttgaac acaacggccg cgcggcggta
       61 ggcgcggccc cgcgcattgc ccgccggagg gacgtcgtcc gtcggctacc cgggccgccg
      121 agcggccgcc gagtagatcc cgcccaggaa ccggctgggc acgcggccga gttggcgcgg
      181 atccgtcagg ccggcttccg ccgccagccg ctcccacgtc gggtaccgga acgggttcgg
      241 cacccacgaa ttcccgctgt ccgcgtcgta ctcgaccacg acgaactgtc cgcccggtcg
      301 aaggcgtgcc gccagaccgg cgatcacggc gccctgccga tcccgcggaa cgaagtgcag
      361 gctgttggcc gcgacgacgc cgtccagctc gggcaggtcg aacggccggg tgaagtccgc
      421 cgccacggtc tcgagggcga cctcggggaa cctggcgcgc accacctcgg cgttgtcgcg
      481 gagcgccccg gcgtcgcgat ccaccgcgac gatgcgtccg ccggctccca gcaggtcggc
      541 cagggcgagc gtgaacgcgc cggacccggc gccgatgtcg gcccaggtgc cgcccggtcg
      601 gaccgcacgt cggagcaacg ccacgtggtc ggcgtggtcc atcgctagcc ggtgctctgc
      661 aggcccgccg cgacgccgtt gacggtcagc tggaccagaa gcagcacgcg ctcgcgctcg
      721 gggtcgtccg gggcgagccc acgaagccgc tccagcaacc gcacctggag ctcggacagc
      781 gaatcgacgt acgggttgcg gagcgtgacc gagcgctgca ggaccggcga cccgtcgagg
      841 agccgcgcat ggccggtgag gcgcgtcacg atcgccacgg tccgccggta ctccgattcg
      901 atcgcgtccc agcggcggtc gtccccggtc ccggtcgcga gcgaggcata gaggcgggcc
      961 actcccatgt cggccttggc caggctcatc tcggcgttgt cgatcaggct ggacaggaac
     1021 ggccagtcgc gggcgagccg tgcgatcgtc tccaggccgg gctcgccgtg cgcctcccgg
     1081 taggcctcga gcgccgtgcc gagcccgtac cagcccggca ggttgatccg ggcctgcgac
     1141 caggcgaacg tccacgggat ggcccggaga gcgtcgatcg gcggcgcgac gtcacgccgg
     1201 ccgcgcgccg ccgggcgtga accgagccgg aggtcggaca gctcccggat cggggtgatg
     1261 tcgcggaaga aggcggcgaa accggggtcg tcgtggacga gcgcgcgata tgcggcgcgg
     1321 gacgtggccg cgagctcggc caggatcgga gcgcccgcga cgtacgctcg gcgcagtcgg
     1381 gcctcgtgct ccggggtcga tgccaccagg acggcgccga ccgcctgctc gaggtgccgc
     1441 tcggcgatcg tcgcgtccga gtagtgcgcc gcgatcacct cgccctgttc ggtcagcttg
     1501 aggcgcccgt cgaccgagcc cggagcgagg cccaggatcg cccggttggt cgggccgccg
     1561 ccgcggccga tcgccccgcc gcgcccgtgg aagatcgtga gctcaacgcc gcgcgcggtg
     1621 gccgtttcga ccatcgacgc ctgggcctgc tggagcatcc aggcgccggc caggaacccg
     1681 agctccttgt tcgagtcgga gtacccgagc atcacttcct ggcggtcgcc atgggctcgg
     1741 attccatcgc ggtaggccgg atcgtcgagg agcgccgcga ggatcgagcc tgcgcgctcg
     1801 agcgcgacgc tcgactcgaa cagcgggacc acgtcgagcg cgggcgcgtc cccgtcgccc
     1861 gcggcgagcc gggcgagctc gagcacgttg gccacgtcgg tcgcggacgc ggtgaagctc
     1921 acgacgtacc gacggcaggc ctccacgccg tggcgggcct gggccgccgc gatcccccgg
     1981 aacgttgcga ggacctcgtc gagggtcact ccggcggcga gctccgtcga acccgaccgg
     2041 cccgcccgga cggccgcgag cgccgccgcg tggatcgccg cgtgctgccg gatctcgagc
     2101 gaggcgaggt ggaagccgaa cgtcccgagc tgccatcgca gctcggcgac ctcgccccat
     2161 gcgacccggc ccaggccgtc cgccacgagc gcctcctgga tctcgaccag ctcggtgtcg
     2221 agatccgccg gggtcgcgta ccgtccggtt cggggcgccg cctcgcccgt cagcgccgcc
     2281 cgggtccggc ggaggcgctc cgcgatgaac ccgaagcgct ggcggtaggg ctcgtccgga
     2341 aagcgccggc ggagctggcg atcggtctcc ggcaagtctt cggcgtcgcg cgccagccgc
     2401 gaggcgagcg gccgcgtcac gcggtccgtc ggggtcgcgg cggcgatcgt ctgcatcagg
     2461 cgcgtggcga ccgcctcgta gccgtggagg acgtggtcgg cctggatgcg gagggtcttc
     2521 tcggtgatct
//
LOCUS       DATDDI010000872         2058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_476289, whole genome shotgun sequence.
ACCESSION   DATDDI010000872 DATDDI010000000
VERSION     DATDDI010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476289"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VIU37_12740"
     CDS             complement(<1..593)
                     /locus_tag="VIU37_12740"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEY6014875.1"
                     /translation="MDDDDRQDAFDTLAVHAGAEPDELTGAVAPPIYQTSTFAQDGVG
                     RPRRGYEYSRSQNPTRERLERAVARLEGGSTGIAFASGSAATAAIADLAGPGDEIVVG
                     DDVYGGTFRYLERVHRGKGVDARYVDLASGQDALWEALSERTRLVWFESPTNPHLKLV
                     DIVATAETVRRRAAEGGRRPLVVVDNTFASPALQRPL"
     gene            complement(618..1175)
                     /locus_tag="VIU37_12745"
     CDS             complement(618..1175)
                     /locus_tag="VIU37_12745"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014876.1"
                     /translation="MHVPPIRTARFELVSMSMRFMTLLLARDLDGASEELGVRVPEEL
                     PEQLDNFLHYRVVDLELDPAAQPWLGRAIVLTEPDGTRRFVGTAGFHAPPDAEGRVEV
                     GYRVEPQYRRQGVATEVVHGLFDWAAREHGIRRFRASVAPGNVPSRAIIARLGFRQVG
                     VQMDEIDGEELVFELDDWPVAPATP"
     gene            1249..>2058
                     /locus_tag="VIU37_12750"
     CDS             1249..>2058
                     /locus_tag="VIU37_12750"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HEY6014877.1"
                     /translation="MSTVTPHSQATTGEPVPLRERLLAWKEILETANPPVTRPLDTVG
                     KWLVITRAAVFPMTIWSGLIGGLLAVEAARTAGGAAVDWGLFAIAVVGLVLAHTANNM
                     INDYFDTSQGIDTDDYVRALYAPHPILAGWVTRRQLAAAILIVNTIDLLLMLYLASVR
                     GPLIVAFALGGLFVSVFYVAPPIRLKHHGLGEPGVFLVWGPLMVGGTFLAATGTIPGW
                     VLLASVPYALIVTSVLFGKHIDKIVADSKLGVRTLPVILGEARARTVGAWLM"
BASE COUNT          292 a          740 c          715 g          311 t
ORIGIN      
        1 ctgagcggcc gctggagcgc cggcgaggcg aaggtgttgt cgacgaccac gagcggccgt
       61 cgcccgccct ctgccgcccg gcgccgcacg gtctctgcgg tcgcgacgat gtcgaccagc
      121 ttgaggtgcg ggttggtggg actctcgaac cagacgagcc gggtccgctc ggacagcgct
      181 tcccacagtg cgtcctggcc ggaggcgagg tcgacgtacc gcgcgtccac gcccttgccc
      241 cggtgcaccc gctcgaggta gcggaacgtg ccgccgtaca cgtcgtcgcc gaccacgatc
      301 tcgtcgcccg gtccggccag gtcggcgatc gcggcggtcg cggcggaccc cgaggcgaag
      361 gcaatccccg tcgagccgcc ctcgagccgg gcgacggcgc gttccagccg ctcgcgcgtc
      421 gggttctgcg agcgcgagta ctcgtaccca cgccgtggcc gcccgacgcc gtcctgggcg
      481 aacgtggagg tctgatagat cggcggcgcg accgcgccgg tcagctcatc cggctcggcg
      541 ccggcatgga cggccagcgt gtcgaaggcg tcctggcggt cgtcgtcatc cacggcggca
      601 ttctggcatc cgggcggtca cggcgtcgcc ggcgcgacgg gccagtcgtc gagctcgaag
      661 accagctcct cgccgtcgat ctcgtccatc tgcacgccga cctggcggaa ccccagccgc
      721 gcgatgatcg cccgcgacgg gacgttgccc ggcgcgacgg aggcgcggaa tcgccggatc
      781 ccgtgctcgc gggccgccca gtcgaacaat ccgtggacga cctcggtggc gacgccctgc
      841 cgccggtact gcggctcgac gcgatagccc acctcgaccc gcccctcggc gtccggcggc
      901 gcatggaaac ctgcggtgcc gacgaatcga cgcgttccgt cgggctcggt caggacgatg
      961 gcccggccga gccagggctg cgcggcagga tccagctcga gatccacgac ccggtagtgc
     1021 aggaagttgt cgagctgctc gggcaactcc tcggggacgc gcacgccgag ctcctcggac
     1081 gcgccgtcga ggtcgcgggc gagcagcagg gtcatgaacc gcatggacat cgagaccagc
     1141 tcgaaccgtg cggtgcggat gggcggcacg tgcatccgct catggttgca caacgtataa
     1201 cgtgatacat tcatgtcgca cgtttctgcg aaccacgccg aggatccgat gagcaccgtc
     1261 acaccgcaca gccaggccac gaccggcgag ccggtcccgc tacgcgaacg actcctcgcc
     1321 tggaaggaga tcctcgagac ggccaacccg ccggtgaccc ggccgctcga cacggtcggg
     1381 aaatggctgg tgatcacccg agcggccgtc ttcccgatga cgatctggtc ggggctgatc
     1441 gggggcctgc tcgcggtcga ggcggcccgg acggcgggcg gggccgcggt ggactggggc
     1501 ctgttcgcga tcgcggtcgt cgggctcgtc ctcgcccata cggccaacaa catgatcaac
     1561 gactacttcg acacgtcgca gggcatcgac acggacgact acgtccgggc gctctatgcg
     1621 ccgcacccga tcctggccgg ctgggtgacc cggcgccagc tggcggccgc aatcctcatc
     1681 gtgaacacga tcgacttgct gctgatgctc tacctggcgt ccgtccgcgg cccgctgatc
     1741 gtcgcgttcg cgctcggcgg gctgttcgtg tccgtgttct acgtcgctcc gccgatccgg
     1801 ctcaagcacc acggcctcgg cgagcccggg gtcttcctcg tctgggggcc gttgatggtc
     1861 ggcggtacct tcctcgccgc caccggcacg atcccgggct gggtgctcct ggcgtccgtg
     1921 ccgtacgcgc tgatcgtcac gtcggtcctg ttcggcaagc acatcgacaa gatcgtcgcc
     1981 gacagcaagc tcggcgtccg gaccctcccg gtcatcctcg gcgaggcgcg agcccgaacg
     2041 gtcggagcgt ggctgatg
//
LOCUS       DATDDI010000873         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_226776, whole genome shotgun sequence.
ACCESSION   DATDDI010000873 DATDDI010000000
VERSION     DATDDI010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226776"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1497)
                     /locus_tag="VIU37_12755"
     CDS             complement(<1..1497)
                     /locus_tag="VIU37_12755"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase/4-alpha-glucanotransferase
                     domain-containing protein"
                     /protein_id="HEY6014878.1"
                     /translation="MAPRISLALTIHNHQPVGNFGWVLSEVYGQAYLPMLEALERHPA
                     VRLSLHYSGPLLDWLRAERPEFIARLATLVARDQVEILGGGYYEPVLASLPERDRIGQ
                     LQRMADELEGLFGRRPGGAWLAERVWEPDLPTSLVAGGYAWTILDDAHFRAAAIPEED
                     LWGPYTTEDQGQRLTVFGTEQGLRYRIPFRDVEEVIDYLRVHATDEGTRVGMMGDDGE
                     KFGAWPTTWQHCWGEGRWVDRFFEALEANAGWLATTTPSAWLADHRPIGRVYVPTGSY
                     AEMGEWALPADESREFSAVLHAAQAAGRPETRWLRGAFWRNFQVKYREINDLHKQMLR
                     VSEKVEAMGPGADRTAALDHLYRGQSNDCYWHGLFGGIYIAHMRAATLHHLIAAEDLA
                     DAAAGRSTGSEVLDLDLDGRDEIRIANTGQTVAIDLDEGAGIGSWDLRAARHALTGVL
                     RRRPEAYHETLREHERKLAQASDAAARGGAVGHAPPAAAADESGGAASI"
     gene            complement(1502..>1732)
                     /locus_tag="VIU37_12760"
     CDS             complement(1502..>1732)
                     /locus_tag="VIU37_12760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014879.1"
                     /translation="DLYLLLEEQIIPGYYERDASGMPLRWVAVMRRAMATALWRFSTT
                     RMLHEYTERLYLPAAGVAVARADAAPAVTEAG"
BASE COUNT          232 a          632 c          620 g          248 t
ORIGIN      
        1 gatcgatgcg gcgccgcccg actcgtccgc cgccgccgcg ggcggcgcgt gaccgacggc
       61 cccgccacgc gcggccgcgt cgcttgcctg ggccagcttc cgctcgtgct cgcggagcgt
      121 ctcgtggtac gcctcgggcc gccgccggag cacgccggtc agggcatggc gcgcggctcg
      181 caggtcccac gacccgatgc cagcgccctc gtcgaggtcg atcgccaccg tctggccggt
      241 gttggcgatc cggatctcgt cgcggccgtc caggtcgagg tccagcacct cgctcccagt
      301 ggacctgccc gccgcggcgt cggcaaggtc ctcggcggcg atcaggtgat ggagcgtcgc
      361 cgcccgcatg tgggcgatgt agatgccgcc gaacaggccg tgccagtagc agtcgttcga
      421 ctgcccgcgg tagaggtggt cgagggccgc ggtccgatcg gcgcccggcc ccatggcctc
      481 caccttctcg gagacgcgga gcatctgctt gtggaggtcg ttgatctcgc ggtacttgac
      541 ctggaagttg cgccagaacg cgccccgcag ccagcgcgtc tcgggccggc cggcggcctg
      601 cgccgcgtgg aggacggccg agaactcgcg gctttcgtcg gccggcaacg cccattcacc
      661 catctcggcg tacgacccgg tcgggacgta gacgcgcccg atcgggcggt ggtcggccag
      721 ccacgccgac ggcgtcgtcg tcgccagcca gccggcgttg gcctcgagcg cctcgaagaa
      781 ccggtccacc cagcgcccct cgccccaaca gtgctgccag gtcgttggcc aggcgccgaa
      841 cttctcgccg tcgtcgccca tcatcccgac ccgtgtcccc tcgtcggtgg cgtggacgcg
      901 gaggtagtcg atgacctcct ccacatcccg gaaggggatc cggtagcgga gcccctgctc
      961 cgtcccgaag acggtcaggc gctggccctg gtcctcggtg gtgtacgggc cccagaggtc
     1021 ctcttcgggg atggccgcgg cccggaagtg cgcatcgtcg aggatcgtcc aggcgtagcc
     1081 gccggcgacc agcgaggtcg gcaggtccgg ttcccagacg cgttccgcca gccacgcccc
     1141 gcccggccgc cggccgaaca ggccctcgag ctcgtcggcc atgcgctgca gctggccgat
     1201 ccggtcgcgc tcggggagcg aggcgagaac cggctcgtag tatccgccgc cgaggatctc
     1261 gacctggtcg cgcgccacca gtgtcgccag ccgtgcgatg aactccggcc gctcggcacg
     1321 cagccagtcg agcagcggac ccgagtagtg gagcgacagg cggaccgccg gatggcgctc
     1381 gagcgcctcg agcatgggca ggtaggcctg gccgtagacc tcgctgagga cccaaccgaa
     1441 gttgcccacc ggctggtggt tgtgaatcgt cagcgcgagc gagatgcgag gcgccatcga
     1501 cctagccggc ttcggtgacg gccggggcgg cgtcggcacg ggcgaccgcg accccggcgg
     1561 cgggcaggta gagccgctcg gtgtactcgt gcagcatccg cgtcgtcgag aaccgccaca
     1621 gcgcggtggc catcgcccgc cgcatcaccg cgacccagcg cagtggcatg ccggatgcgt
     1681 cgcgttcgta gtagcccggg atgatctgct cctcgagcag caggtagagg tc
//
LOCUS       DATDDI010000874         3094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_746842, whole genome shotgun sequence.
ACCESSION   DATDDI010000874 DATDDI010000000
VERSION     DATDDI010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746842"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VIU37_12765"
     CDS             complement(<1..434)
                     /locus_tag="VIU37_12765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014880.1"
                     /translation="MAARIHGTSDEGAGQRDLALVAVTVVGLSRLVEPPLVWLVAALL
                     LGAVVLGALQVLADELGPAEAESGVAIEALILPAVAAVACVGAIRLIPFGLWLVPGLA
                     LTWLLVRRALALEARIHRATSGLTADDQTAVLVTILLVSFIG"
     gene            complement(434..2260)
                     /gene="polX"
                     /locus_tag="VIU37_12770"
     CDS             complement(434..2260)
                     /gene="polX"
                     /locus_tag="VIU37_12770"
                     /inference="COORDINATES: protein motif:HMM:NF006375.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HEY6014881.1"
                     /translation="MTTDQAALTNGDLARIFHEIGDMLELKGELGFKVIAYHRAADAI
                     GRSPVDLVSAYRSGDPPRIAGVGKAISDKLAELASTGRLAFHERLRAEVPPRLVELLQ
                     ISGLGPKSVRQLHQELGIESLDDLRAAAESGRLRTVRGMSARTEALVLEGLARLAERP
                     PVRMRLDRAEELVTAVMAALAPVPGVGSLEPAGSFRRRKETIGDLDVLAETSDPAALM
                     AAFTSLPMAETVIGKGLAKSAIRLVRGPQVDLMAMSPGAAGTYRIHFTGSKEHNVRLR
                     AMARDRGWSLSEKGFLRIGEDGEPLTGDAAELRTFPTEAEAYAFLGLPFIEPELRENQ
                     GEIEAALAGTLPRLVTLADLRGDLHSHSDWSDGHQPIEVMIEAARARGHAYQVLTDHS
                     QSLGIARGLSPERVARQAEAIAALNARFAEEEAAGTAPAATPPEGFRLLHGCELEIRA
                     DGKLDFEDDLLARFDVVVASVHVGRRQSRADLTRRTLTGIRSPHVDVIAHPSGRKIDE
                     RADLDLDWDLVYGEAARTGTALEMNGSPPRLDLAVERARRAVGMGCLIAIDSDAHDLN
                     ELDYLRWGVSQARRAWIGPESVVNTRSRDELLAWVAGKPGRV"
     gene            complement(2297..>3094)
                     /locus_tag="VIU37_12775"
     CDS             complement(2297..>3094)
                     /locus_tag="VIU37_12775"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY6014882.1"
                     /translation="DLAGRLGGGGARVPGAGRHTGSVASGREAQLVADRIAARVQRAY
                     GLHRTLSAPLSSDDGIVGAIVLSHRTGDTWSATTRRLLRGAADEASAALARAYSHRDA
                     EARASTDALTGLPNRRYFDEFCGLLARRRRSGDAVGVLMIDIDHFKRLNDTHGHATGD
                     EVLRDVGGAIVSAVREDDVPARYGGEEFVVLLRNPGPEVALDVGERVRSSVAALDLSR
                     FGVDKVSVSVGVAVSSRADQPIEDLIILADRALYRAKKAGRDRVVAA"
BASE COUNT          437 a         1148 c         1116 g          393 t
ORIGIN      
        1 aagccgatga agctgaccag caggatcgtg accagcacgg ccgtctggtc gtcggcggtc
       61 agcccgctcg tggcgcgatg gatccgggcc tcgagcgcca gcgcgcggcg aaccaggagc
      121 caggtgagcg cgagccccgg aaccagccac agcccgaacg ggatgaggcg gatcgctccc
      181 acgcaggcga cggcggccac ggccggcagg atcagcgcct cgatcgccac gccggactct
      241 gcctcggcag gaccgagctc gtccgcgagc acctggaggg cacccagcac gaccgcgccg
      301 agcaggagcg ctgcgaccag ccagacgagc ggcggttcga ccagccggga gaggcccacg
      361 accgtaaccg cgaccagcgc caggtcgcgc tggcccgcgc cctcgtccga cgtgccgtgg
      421 atgcgagcgg ccatcagacc cggcccggct tgcccgccac ccaggcgagc agctcgtcgc
      481 gtgaccgcgt gttgacgacc gactcggggc cgatccacgc ccgccgcgcc tggctgaccc
      541 cccagcgcag gtagtcgagc tcgttgaggt cgtgggcatc ggaatcgatc gcgatcaggc
      601 agcccatgcc gacggcgcgc cgggcgcgtt ccacggcgag atccaggcga ggcggcgagc
      661 cgttcatctc gagcgcggtg ccggtccgcg cggcctcgcc gtagacgagg tcccaatcga
      721 gatccaggtc tgcccgctcg tcgatcttgc gaccggacgg gtgggcgatg acgtccacgt
      781 gcgggctgcg gatcccggtc agcgtgcgac gcgtcaggtc ggcgcgcgac tgccggcgac
      841 ccacgtggac cgaggccacg accacgtcga accgcgccag caggtcgtcc tcgaagtcca
      901 gcttcccgtc ggcccggatc tcgagctcgc acccgtgaag caggcggaac ccctcgggcg
      961 gggtggccgc gggagccgta cccgccgcct cttcctcggc aaatcgcgcg ttcagcgcgg
     1021 cgatcgcctc ggcctgccgg gccacccgct cgggcgacag gccacgtgcg atcccgagcg
     1081 actgcgagtg gtcggtcagg acctggtagg cgtgaccgcg ggcgcgagcg gcctcgatca
     1141 tgacctcgat cggctggtgg ccgtccgacc agtccgagtg gctgtgcagg tcgccgcgca
     1201 ggtcggcgag cgtgacgagc cgcggcaggg tcccggccag ggccgcctcg atctcgccct
     1261 ggttctcgcg cagctcgggt tcgatgaacg gcaggccgag gaacgcatac gcctccgcct
     1321 cggtcgggaa cgtccggagc tcggctgcgt cgccggtcag cggctcgccg tcctccccga
     1381 tccggaggaa gcccttctcc gacaggctcc agccgcgatc acgggccatc gcgcgcaggc
     1441 gcacgttgtg ctccttggat ccggtgaagt ggatgcggta cgtgcccgcc gcgcccggcg
     1501 acatcgccat caggtcgacc tgcgggccgc ggaccagccg gatcgcggac ttcgcgagcc
     1561 ccttgccgat cacggtctcg gccatcggca gcgacgtgaa cgccgccatc agcgcggccg
     1621 gatcgctcgt ctcggcgagc acgtcgaggt cgccgatcgt ctccttccgc cgccggaacg
     1681 acccggccgg ctcgagcgac cccacgccgg gcacgggcgc cagggcggcc atcacggccg
     1741 tgacgagctc ctcggcccgg tcgaggcgca tccgcaccgg cggccgttcg gccagccggg
     1801 ccaggccctc gagcacgagg gcctcggtcc gtgccgacat cccgcggacg gttcgcaggc
     1861 gcccgctctc ggcggccgcc cgcaggtcgt cgagcgactc gatcccgagc tcctggtgga
     1921 gctggcgaac cgatttcggt cccagcccgg agatctgcag cagctcgacg aggcggggcg
     1981 ggacctccgc gcgcaggcgc tcgtggaagg cgagccgccc ggtgctcgcc agctcggcca
     2041 gcttgtcgct gatcgccttg cccacacccg cgatgcgggg cggatccccg gaccgatacg
     2101 ccgacacgag gtcgaccggg ctgcgcccga tggcgtcggc ggcccgatgg taggcaatga
     2161 ccttgaaccc gagctctccc ttgagctcga gcatgtcgcc gatctcgtgg aagatccggg
     2221 cgaggtcgcc gttggtcaac gcggcctggt cggtggtcac cggccgatgg tagacggtgc
     2281 ccgcccggga ggggcgtcag gcggcgacga cccggtcgcg acccgccttc ttggcccgat
     2341 agagggcccg gtcggccagg atgatcaggt cctcgatcgg ctggtcggcg cggctcgaca
     2401 ccgcgacgcc caccgacacg ctgaccttgt ccacgccgaa ccggctcagg tcgagcgccg
     2461 cgacggacga gcgcacgcgt tcgcccacgt cgagcgcgac ctcgggaccc ggattgcgga
     2521 ggaggacgac gaactcctcg ccgccatatc gtgccgggac gtcgtcctcg cggacggccg
     2581 acacgatcgc accgccgacg tcgcgcagca cctcgtcgcc ggtcgcgtgg ccgtgggtgt
     2641 cgttgagccg cttgaagtgg tcgatgtcga tcatcagcac cccgaccgcg tcgcctgaac
     2701 gccggcgccg cgcgaggagc ccgcagaact cgtcgaagta gcggcggttc ggcaggccgg
     2761 tcagggcgtc cgtcgaggcg cgggcctccg cgtcgcgatg cgagtaggcg cgggcgagcg
     2821 ccgcggatgc ctcgtcggcg gccccgcgta gcagccgacg ggtcgtcgcc gaccaggtgt
     2881 cgccggtccg atgcgacagc acgatcgcac cgacgatccc gtcatccgag ctcagcgggg
     2941 ccgacagcgt gcggtggagc ccgtacgccc gctgcacccg cgcggcgatc cggtcggcga
     3001 cgagctgggc ctcgcgtccc gaagcgacgg agccggtgtg acggccggcg cccgggaccc
     3061 gcgcacctcc gccgccgagc cggcctgcca gatc
//
LOCUS       DATDDI010000875         2733 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_538756, whole genome shotgun sequence.
ACCESSION   DATDDI010000875 DATDDI010000000
VERSION     DATDDI010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538756"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VIU37_12780"
     CDS             complement(<1..227)
                     /locus_tag="VIU37_12780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014883.1"
                     /translation="MSAGEQRPAVAGPLAAAVAGIETIQPGDEFDPRVPAAIVGAGLH
                     RLPVPAGAGGLGGTMSESAEVLAALGAVDGSA"
     gene            complement(224..1720)
                     /locus_tag="VIU37_12785"
     CDS             complement(224..1720)
                     /locus_tag="VIU37_12785"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEY6014884.1"
                     /translation="MTGSDHRTPLLGDMDPEAFRSAAHAVVDVMADYLDTLESRAVFP
                     AIEPGSLRPLFPASPPEAPEPIEAILADYRRLVEPNATHWQHPGFLAYFATTASGPGI
                     FGEMLVATLGQNPMLWRTSPIGTELEQVVVDWLRQALGLPSAFDGLLTDTASTSTLIA
                     LAAAREACGGDVAARGLAGREDLGGGLRVYASAEAHSSVEKACMTLGLGRASLVRIPV
                     NERFEMLPDALASAITADLAAGRRPIGIVATVGTTSSTSVDPVAAIADVAEQHGLWLH
                     VDAAYAGVVAMLPDRRAPFAGWERADSIVVNPHKWLFTPLDASLLLTRRMEVLRAAFS
                     LVPEYLRTLDRVAPVRDYNEYTPQLGRRFRALKLWIQLRWFGLEGLRRRIEAHLALAA
                     DLAASVAADPDWELLAPVPFSTVCLRWRPAALAGHADEPSVAERLDEANAAIMDAVNR
                     GGEVFLSHTRLDGRFTIRVAVGNLRTEARHVERAWEVLRAAAATQSIP"
     gene            complement(1752..2519)
                     /locus_tag="VIU37_12790"
     CDS             complement(1752..2519)
                     /locus_tag="VIU37_12790"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEY6014885.1"
                     /translation="MTEPTPAPEPVGDQPPAPSAPPAPPAEPSPAARWQAPPPVAEVP
                     GAPGLVFSDIPSRLVAYVVDVAIVGIAGAALVIALGLGEVVQTSTSRYVWVSGWTANI
                     AFALLGALYFVFFWTGGRRATIGQRAFDIQVGNAFDGRPLTVDQAVRRWLGYGSFLGL
                     LGVVPSLRGFDSLAQFVWILVLLASAARSPMKQGLHDRFARSALVRPADRASGGAAMT
                     CLVIVVVVGILFVAAIAALIYLGSRVDPLAPPPGTTI"
BASE COUNT          414 a          984 c         1027 g          308 t
ORIGIN      
        1 gccgacccat ccacggcccc gagcgcggcg agcacctcgg ccgactcgct catcgtgccg
       61 cccagcccgc cggccccggc cgggaccggc agccggtgca gcccggcgcc gacgatcgcc
      121 gcgggcacgc gtgggtcgaa ctcgtcgccc ggttgaatgg tctcgatgcc cgcgaccgcc
      181 gccgcgagcg ggccggcgac ggcggggcgc tgttccccgg cgctcatggg atcgactgcg
      241 tcgcggccgc ggcgcggagc acctcccagg ctcgctccac gtgccgcgcc tcggtccgca
      301 ggttgcccac cgccacccgg atcgtgaacc ggccgtcgag ccgggtgtgt gacaggaaga
      361 cctcgccgcc gcgattcacg gcgtccatga tcgcggcgtt cgcttcgtcc agacgctcgg
      421 cgacggacgg ctcgtcggcg tgcccggcca gggcggccgg acgccagcgg aggcagaccg
      481 tggagaacgg gacgggcgcc agcagctccc agtcggggtc cgccgcgact gacgccgcca
      541 ggtcggcggc cagcgccagg tgcgcctcga tccggcggcg caacccctcc agcccgaacc
      601 agcggagctg gatccagagc ttgagcgccc ggaaccggcg gccgagctgg ggggtgtact
      661 cgttgtagtc gcggaccggg gccacccggt ccagcgtgcg caggtactcc gggacgaggc
      721 tgaacgcggc ccgcaggacc tccatccggc gggtgagcag cagcgacgcg tcgagtggcg
      781 tgaacagcca cttgtgcggg ttgacgacga tcgaatcggc gcgctcccag ccggcgaacg
      841 gcgcccgacg gtccgggagc atggccacca cgcccgcgta ggcggcatcg acgtggagcc
      901 agagcccgtg ctgctcggcg acgtccgcga tcgcggcgac cggatcgacc gaggtggacg
      961 aggtggtccc gacggtcgcg acgatcccga tcgggcggcg cccggccgcc aggtctgcgg
     1021 tgatcgcgct cgccagcgcg tccggcagca tctcgaaccg ctcgttgacc gggatccgga
     1081 cgagcgacgc ccgcccgagc ccgagcgtca tgcacgcctt ctcgaccgag ctgtgcgcct
     1141 cggccgacgc atacacccgg agcccgccgc ccaggtcctc gcgccccgcg agcccgcgcg
     1201 cggcgacgtc gccaccgcac gcctcgcggg ccgccgcgag cgcgatgagc gtcgacgtcg
     1261 acgcggtgtc ggtcagcagc ccgtcgaacg cggacggcag cccgagcgcc tggcgcagcc
     1321 agtcgaccac gacctgctcg agctccgtcc cgatgggcga cgtccgccac agcatcgggt
     1381 tctggccgag ggtcgcgacc agcatctcgc cgaagatccc cgggcccgac gcggtcgtcg
     1441 cgaagtacgc caggaagccc gggtgctgcc agtgcgtggc gttcggctcc accagccgcc
     1501 ggtagtcggc caggatcgcc tcgatcggtt cgggcgcctc gggcggcgat gccggaaaga
     1561 gcgggcgaag cgagccgggt tcgatggccg ggaagacggc cctcgactcg agcgtgtcga
     1621 ggtagtcggc catcacgtcg acgacggcgt gggccgccga gcggaacgcc tcgggatcca
     1681 tgtcgccgag cagcggcgtt cgatggtcag atccggtcac gccgtcagtg tatcgagcgc
     1741 cggggggcgg ctcagatggt cgtgcccggc ggtggcgcga gcggatcgac ccggctcccg
     1801 agatagatca gggcggcgat cgcggcgacg aacaggatgc cgaccacgac gacgatgacc
     1861 aggcaggtca tggccgcgcc accggacgcg cgatccgcgg ggcgcaccag agcagaccgg
     1921 gcgaaccggt cgtggaggcc ctgcttcatc gggctgcggg cggcggacgc gagaagcacc
     1981 aggatccaga cgaactgggc gagcgaatcg aacccgcgca ggctcgggac gacgccgagc
     2041 agaccgagga agctgccgta ccccagccag cgacgcaccg cctggtcgac cgtcagcggc
     2101 cggccgtcga acgcattccc gacctggatg tcgaacgccc gctggccgat cgtggcgcgc
     2161 cggccgcccg tccagaagaa cacgaagtag agcgccccga gcagcgcgaa cgcgatgttg
     2221 gccgtccagc cggagaccca cacgtacctg gaggtcgagg tctggacgac ctcgccaagg
     2281 ccgagggcga tgaccagcgc ggcaccggcg atcccgacga tcgcgacgtc gacgacatag
     2341 gccacgaggc gcgacggaat gtcggagaag accaggcccg gggcacccgg gacctcggcg
     2401 acgggcggtg gggcctgcca ccgggccgcc ggtgacggtt cggcaggcgg agccggcggc
     2461 gcggagggtg cgggtggctg gtcgccaaca ggctcgggcg cgggcgtcgg ttcggtcatc
     2521 ccccctcaca agagcgcgac ttccgccatc gtagtccgtc ggcgtgggcg gccgctcggc
     2581 tcagtcgacg gcgggaagct gcgccgccat ggcgtcgaga aggtcggacg ggcgatacgg
     2641 cttggcgagg aagtcggcgg cccccgccgc gagcgcgacg gcacgttcgg tgggcagaac
     2701 gctcgcgctc aggaccacga agctgggcgt ctc
//
LOCUS       DATDDI010000876         2800 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_684603, whole genome shotgun sequence.
ACCESSION   DATDDI010000876 DATDDI010000000
VERSION     DATDDI010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2800
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684603"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VIU37_12795"
     CDS             complement(<1..764)
                     /locus_tag="VIU37_12795"
                     /inference="COORDINATES: protein motif:HMM:NF018047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4032 domain-containing protein"
                     /protein_id="HEY6014886.1"
                     /translation="MRDRASKLIELPWELPLAAWPASSLNFRDLPVGPSRHLVRFLVV
                     DGLTFALKEEPLEVATDEFDVLRHLEDAGLPAVLAVGLAAVPERDSAILITEYLAYSI
                     QYRRLLMRFPLGPGPYRDRLLDAMASLLVDLHRAGVYWGDCSLANTLFRRDGDKIQAY
                     LVDAETSEIHPALSDGQRAYDLDILVENVAFGLADLAAMQDRPEGFEDAVAAAETVRT
                     RYCAVWEELHLEPELSPGDRHAIRARIRRLNELGFA"
     gene            complement(839..1279)
                     /locus_tag="VIU37_12800"
     CDS             complement(839..1279)
                     /locus_tag="VIU37_12800"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014887.1"
                     /translation="MSDPSAITFRPATAADAPAIAALFTDEGYPAGPSDIKARLARFD
                     APTSRVVIAELDGAILGFIAVVALPRFEHDDWILRIVALVVDAGARERGVGRALMGEA
                     ERIGREVGATFVEVTAGHHRPEARHLYESLGYDSAVTAYLRKKL"
     gene            complement(1276..1785)
                     /locus_tag="VIU37_12805"
     CDS             complement(1276..1785)
                     /locus_tag="VIU37_12805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014888.1"
                     /translation="MDDRPPAERIALAWQEARATAAGWRSLHARPLAVGWATVELDRA
                     TADLAVALRLPGAEPFVAVRRSDALGATARLAAGVGPDGGSLVVLEPDTEGRLAGSLA
                     RLGEGPVAMWLAVDGPGLGLEALHGAGLSLSPEVDGPFGPERLVVGAGDVPGRHRLLV
                     ARSAGTIRP"
     gene            complement(1787..2614)
                     /locus_tag="VIU37_12810"
     CDS             complement(1787..2614)
                     /locus_tag="VIU37_12810"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014889.1"
                     /translation="MTTIDSATMRRLTLHEAQVHAMPGREVRDLGDAILLHDPIDPEP
                     FWNRIAAVRWPSDPVAFDRRLTEMLVLFASLGRQPHVWASPLHDRPVDLVERLTANGF
                     RDTGEGSVMVLADPAPAEALVARPLAPGVAVERLSGIRGRIAAEAASAIVEVLADAFD
                     VGSDRRLGVTAETISSLARPTFTHYLARWDGRPVAVARRATFDGISYLSSIGTAAWGR
                     GNGFGRLVTAVASSDAVAAGSEWTHLGVFADNRGAIRLYGDLGFDRVGEACPDLLLI"
BASE COUNT          418 a         1017 c         1019 g          346 t
ORIGIN      
        1 atcgcgaaac ccagctcgtt gagccggcgg atccgtgccc ggatggcgtg tcggtcgccg
       61 ggtgacagct ccggctcgag gtgcagctct tcccagaccg cgcagtagcg ggtccgcacg
      121 gtctcggcag cggccaccgc atcctcgaag ccctcgggcc ggtcctgcat cgcggcgagg
      181 tcggccaggc caaaggccac gttctcgacg aggatgtcca ggtcgtaggc gcgctgcccg
      241 tcggacagtg ccggatggat ctcgctcgtc tccgcgtcga ccaggtaggc ctggatcttg
      301 tcgccgtcac ggcggaagag cgtgttggcc agcgagcagt cgccccagta gacgccggcg
      361 cggtggaggt cgacgaggag cgaggccatc gcgtcgagca gtcggtcccg gtacggcccc
      421 gggccaagcg ggaagcgcat cagcaggcgc cggtactgga tcgagtaggc caggtactcc
      481 gtgatgagga tggcgctgtc ccgctccggg accgccgcca ggccgaccgc caggaccgcc
      541 ggcaggccgg cgtcctcgag gtgacgcagg acgtcgaact cgtcggtcgc gacctcgagc
      601 ggctcctcct tgagcgcgaa tgtcaggccg tcgaccacga ggaaccggac gaggtggcgc
      661 gacgggccga cggggaggtc gcggaagttg agcgaggacg ccggccaggc cgccaggggc
      721 agctcccagg gcagctcgat cagcttgctg gcgcggtcgc gcaaccggag ccgcgggaac
      781 ccggccggga gggccggctc gctcggctgg cggagcggcg ccagctcggt cggcccggtc
      841 agagcttctt gcgcaggtag gccgtcaccg cggagtcgta ccccagcgac tcgtacaggt
      901 ggcgcgcctc gggacgatga tgaccggccg tgacctccac gaacgtggca ccgacctccc
      961 gaccgatccg ctccgcctcg cccatcaggg cccggccgac gcctcgctcg cgcgcccccg
     1021 cgtcgacgac aagggccacg atccgcagga tccagtcatc gtgctcgaag cgaggcaggg
     1081 ccacgacggc gatgaagccg aggatggccc cgtcgagctc ggcgatgacg acgcgcgacg
     1141 tgggtgcgtc gaaccgggcg agccgggcct tgatgtcgct cgggcccgcc ggatagccct
     1201 cgtcggtgaa cagcgccgcg atcgccggcg cgtcggcggc ggtggccggc cggaacgtga
     1261 tggcggatgg atcgctcatg gacggatggt acccgccgag cgagcgacga gaagccggtg
     1321 ccggccggga acgtcgccgg cgcccaccac gagccgctcc ggaccgaatg gcccgtcgac
     1381 ctccggcgag aggctgagac ccgcgccgtg gagggcctcg agtccgagac caggtccgtc
     1441 cacggccagc cacatcgcca cgggaccttc gccaagccgg gcgagcgagc cggcgagccg
     1501 accctcggtg tcgggttcga ggacgaccag cgagccgccg tccgggccga cacccgctgc
     1561 gagccgggcg gtggcgccca gggcgtcgct cctccggacg gcgacgaacg gctctgcacc
     1621 cgggagacgg agcgcgacgg cgaggtcggc cgtcgcacgg tcgagctcga ctgtggccca
     1681 tccgacggcc agcggccgcg cgtgcaggga gcgccatccc gcggcggtcg cgcgggcctc
     1741 ctgccacgcc agggcgatcc gttccgcggg cggccggtcg tccacctcag atcagcagga
     1801 gatccgggca cgcctccccg acccggtcga agccgaggtc tccgtacagg cggatggcgc
     1861 cccggttgtc ggcaaagacc ccgagatggg tccactcgct gccagccgcg accgcatcgc
     1921 tcgaggcgac ggccgtcacg agccgcccga acccgtttcc gcgcccccag gcggcggtcc
     1981 cgatggacga caggtagctg atcccgtcga acgtggcccg ccgggccacc gcgaccggac
     2041 ggccgtccca gcgcgcgagg tagtgcgtga acgtcggccg ggcgagcgag ctgatcgtct
     2101 cggccgtcac tccgagccgg cggtcactcc ccacgtcgaa cgcgtcggcg agaacctcga
     2161 cgatcgcgct ggccgcctcg gccgcgatcc tcccgcggat cccggacagc cgctcgacgg
     2221 ccacacccgg cgccaggggt cgcgcgacca gcgcctccgc cggcgcggga tccgcgagga
     2281 ccatcacgct cccctccccg gtgtcccgga acccgttggc ggtcagccgc tcgacgaggt
     2341 ccaccggcct gtcgtggagc ggcgacgccc acacgtgcgg ctggcgcccg agggaggcga
     2401 acaggaccag catctccgtg agccggcggt cgaaggccac cgggtcggat ggccagcgga
     2461 cggccgcgat ccggttccag aacggctcgg gatcgatcgg gtcgtgaagc aggatcgcgt
     2521 cgccgaggtc ccggacctcg cggccgggca tcgcgtggac ctgggcctcg tggagcgtca
     2581 ggcggcgcat cgtcgccgag tcgatcgtcg tcatgcctcg cacacgatag cggcgacaaa
     2641 accgctgcgg cgagccatgc gtagtctgtc ctgaaaccga caccgcccaa tcaaaggaga
     2701 tcaacccatg cgtcatcgag cccttgtcgg ccttgtggtc ggcgccgtca tgctcctcgc
     2761 cgcctgctcg tcgagtggtg ccaccgccgc tccatccgcg
//
LOCUS       DATDDI010000877         2025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_81555, whole genome shotgun sequence.
ACCESSION   DATDDI010000877 DATDDI010000000
VERSION     DATDDI010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81555"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(213..848)
                     /gene="leuD"
                     /locus_tag="VIU37_12815"
     CDS             complement(213..848)
                     /gene="leuD"
                     /locus_tag="VIU37_12815"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF002458.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEY6014890.1"
                     /translation="MAADMAEPFTVFRSRVVPIPAENVDTDQIVPARYLKVTDKDGLA
                     EALFRDWRFNEDGSLKDPPFILDQPGMAGRRILLVGDNFGAGSSREHAPWALAAWGVR
                     AILSTSYADIFRSNSLKNGVLPIVVDPATHARLFDLLARDPDAELTVDLSEQGVLLPD
                     GTTIDFDIDPFAKRMILAGTDELGYLLTKEPELSTWESAHPPRIDTLVGAS"
     gene            complement(838..>2025)
                     /gene="leuC"
                     /locus_tag="VIU37_12820"
     CDS             complement(838..>2025)
                     /gene="leuC"
                     /locus_tag="VIU37_12820"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF004016.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEY6014891.1"
                     /translation="VKQLETNCAEFGIPLHGIGDPSQGIVHVIGPQLGLTQPGMTIVC
                     GDSHTSTHGAFGALAFGIGTSEVEMVLATQTLLQRDPKTYEVRVDGRLTPGVSAKDII
                     LALIARIGVGGGTGHVFEYTGEAIRGLTMEQRMTICNMSIEGGARAGLIAPDDTTFEY
                     LHGRPHAPHGAAWDEAVSGWRRLPTDDGATYDRTITIDADALEPMVTYGTNPGMGIPI
                     SGLVPSPDDQADPAQRRALEHALEYMDLRPGQAILGQKVDVVFVGSCTNGRISDLRLA
                     AGALKGRHIADGVRLMVVPGSDEVKREAEREGLDQIFKAAGADWREAGCSMCIAMNGD
                     QLRPGQYAVSTSNRNFEGRQGKGGRTFLASPLTAAASAIAGVVADPRRLPGIETLAAV
                     GGR"
BASE COUNT          262 a          702 c          748 g          313 t
ORIGIN      
        1 gcggcgtccc ggaggggcct ggcggcgcgg cggtcccgcc ggaactgcag gcggccagga
       61 gggcggcgag ggcgagggtc ggtgccaggc ggcgccaggg gccggcatgg ttgggagtgc
      121 tggtcatggc ccgccagacg cggagccgcg ccgcggggtt ccgccggatc acacccggac
      181 gcgagcgagt ccgggtgtgg cggtccgtcc gatcagctcg cgccgacgag cgtgtcgatg
      241 cggggcgggt gggcggattc ccaggtcgac agctcgggtt ccttggtcag caggtagccg
      301 agctcgtcgg tgccggccag gatcatccgc ttggcgaacg gatcgatgtc gaagtcgatc
      361 gtggtgccgt cgggcagcag gacgccctgc tcggacaggt ccaccgtcag ctccgcgtcg
      421 gggtcgcggg ccagcaggtc aaacagccgc gcgtgcgtgg ctggatccac gacgatcggg
      481 aggacgccgt tcttgaggct gttgctccgg aagatgtcgg cgtaggacgt cgacaggatc
      541 gcccggacgc cccaggcggc aagcgcccag ggcgcatgct cgcgggacga gcccgccccg
      601 aagttgtcgc ccacgagcag gatccggcgc ccggccatgc ccggctggtc gaggatgaac
      661 gggggatcct tgagcgagcc gtcctcgttg aaccgccaat cgcggaagag cgcctcggcc
      721 aggccgtcct tgtcggtcac cttgagatag cgtgccggga cgatctggtc ggtgtcgacg
      781 ttctccgcgg ggatcgggac gacgcgactc cgaaagacgg tgaacggctc ggccatgtca
      841 gcggccaccc accgcggcca gggtctcgat gccgggcagg cggcgcgggt cggccacgac
      901 gccggcgatc gcgctggccg ccgccgtcag cggcgacgcc aggaacgtcc ggccgccctt
      961 gccctggcgg ccctcgaagt tgcggttgct ggtgctgacc gcgtattgcc cgggccggag
     1021 ctggtcgccg ttcatggcga tgcacatcga gcagccggct tcccgccagt cggcgccggc
     1081 cgccttgaag atctggtcga ggccctctcg ctcggcttcg cgcttcacct cgtccgaacc
     1141 gggcacgacc atcagtcgca caccgtcggc gatgtgccgg cccttgaggg cgcccgcggc
     1201 caggcgcagg tcgctgatcc ggccgttcgt gcagctcccg acgaacacca cgtcgacctt
     1261 ctggccgagg atcgcctgcc cgggccgcag atccatgtac tcgagtgcgt gctccagcgc
     1321 ccggcgctgc gccgggtccg cctggtcgtc cgggctgggc accaggccgc tgatcgggat
     1381 gcccatcccg gggttcgtcc cgtaggtgac catcggctcg agcgcgtcgg cgtcgatggt
     1441 gatcgtcctg tcgtaggtgg cgccgtcgtc ggtcggcagg cgccgccagc ccgacaccgc
     1501 ctcgtcccac gccgcgccgt gtggcgcgtg cggccggccg tgcaggtact cgaacgtggt
     1561 gtcgtccggg gcgatcagcc cggcccgggc accgccctcg atgctcatgt tgcagatggt
     1621 catccgctgc tccatggtca gcccgcggat ggcctcgccg gtgtactcga acacgtggcc
     1681 cgtgccgccg ccgacgccga tccgggcgat cagggcgagg atgatgtcct tcgcgctgac
     1741 gccgggcgtc agccgcccgt cgacccggac ctcgtaggtc ttcggatccc gctggaggag
     1801 ggtctgcgtc gcgaggacca tctcgacctc gctggtcccg atcccgaacg cgagcgcccc
     1861 gaacgcgccg tgcgtgctcg tgtgcgaatc gccacacacg atcgtcatgc ccggttgcgt
     1921 cagcccgagc tgcgggccga tgacgtggac gattccctgg ctcgggtcgc cgatcccgtg
     1981 gagcgggatc ccgaactcgg cgcagttggt ctcgagctgc ttgac
//
LOCUS       DATDDI010000878         5851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_726384, whole genome shotgun sequence.
ACCESSION   DATDDI010000878 DATDDI010000000
VERSION     DATDDI010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5851
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_726384"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1044
                     /locus_tag="VIU37_12825"
     CDS             <1..1044
                     /locus_tag="VIU37_12825"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6014892.1"
                     /translation="PFDGRYWSLDVFEGPLRGLATIECEADDEAELAALVPPDWALRR
                     RYGLVQVHTLPDFLVFSAAPLRLAGVPVVLDLHEAMPEFFRSRFRGRAGRFGYALLRA
                     QEAASIRFATAVITVNDALGDRLRELGVPASKLTIILNAPSLARFDAERQPARAFMAD
                     GTLRLVYAGALSPIYELDVVLVAIARLAESRPELPVHLDLYGRDFAEVPLRELATELG
                     IGDRVTFHGRIPIEDVPAAIAAADVGLAPTRRSVFTDFSLSTKAFEYAAMRRPVVASR
                     LPMVERTFGDDVSTYTAGDADDLVLALLHLVDDPAARDDQIARAFERVRDRLSWEGEA
                     RRYLGLVDRLVRR"
     gene            1047..3164
                     /locus_tag="VIU37_12830"
     CDS             1047..3164
                     /locus_tag="VIU37_12830"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEY6014893.1"
                     /translation="MAGRATAPGPREGFRPDIEGLRAIAVVLVLLYHAGVPGVTGGYI
                     GVDVFFVLSGFLITGLLVRELEATGTISLAGFYARRVRRLLPAAMLLILVTVVASTLV
                     LSPLRAGDVASDGIAAALYASNLRFAVQATDYLQSGLPPSPLLHLWSLGVEEQFYLFW
                     PALLLLVTRGVAGAGSWRLRRIGLLAAIVGGASFVLSVWLTGANEPWAFFSLPTRAWE
                     LGIGALLAVGAGRLARLPTPVATTAGWLGLGLIAAGGLVIDTSTPFPGVAALLPTVGC
                     ALAMLPGMTGQASLPARLLGWAPARFMGRISYSLYLWHWPLLVLPLALAGGSLPLVAR
                     VGLMVLAVPIAWASQHWLEDPIRHGRIVGIVPRRNLALAGAVSLAVATTSLGLGFVTT
                     QRLAAATADVADPAGNAAAEAGDAPIPNLVVGTPSPAGTLPPPPGGPVPAGLTPSLAA
                     ARTDQPETYADGCHLDQPSTSIPDCVYGDPGSSTVVVLFGDSHAAEWFPALARLATDR
                     HWRLVSLTKSACTPAEMTIWNSDFKRRYDECDRWREAVLARVQAEHPDLVIVGSSHPY
                     TVTGSNGPGPSDSGQALKAGLTQILLRLRPLAGAVALIGDTPKFDADPPDCLSQHLDD
                     VLACAEPRAGTIDTRWIGIEAALAAQAGATFVDPTDWACPTDPCPVVIGRYLVFRDQH
                     HLATPFVTALRTKLAAALPLPGS"
     gene            3298..5034
                     /locus_tag="VIU37_12835"
     CDS             3298..5034
                     /locus_tag="VIU37_12835"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY6014894.1"
                     /translation="MTFKAKPVVKRAQRPSIDSHARRNLYLNIGFGLVTVAAVVILLV
                     AAGLSWYNDHLASVGSVNGQSITKDEYADRYAIESWRLDQVEQAIRTEVAAGHLTDTQ
                     GQGQLQSVSQARQNLASDTLERLIDNRLQASLAAEAGITVTPADVDARLIKEATTPET
                     RHAWVIEVQPETDAGAVEPTAAQKAAAKAKADAALKDLQGGKAWETVAQAVSTDASTS
                     PKSGDLGWIRSTDTQLDAEFQKALFAAAANAPTAVVEGADGIYRIGRVTEIAPETVDT
                     EYQSKLTTAGIDLAKYRQVVQGDVIHQKLSDKVVADVTGPGPQRHVQEIYIQQPTTLP
                     GADAIKVRHILYSPKDDPSGAAALDPNDPAWKAAKDEADATYQKLQADPSLFDSIART
                     QSDETSDRGATGTGGKLPYFDSSSQVDAAFKAAILKPGLQPGQILEPVKSAFGWHVIQ
                     VMYRPPDLEWLNGLRTKADGGADFATLARDNSEAKSAGKGGDEGWIAKGQLNASLEAG
                     IFGTPIGSVSSVIAVPNDGIYLFKVLAEETRTPEGQQLDTIKSSAFSNWYTQKKDAAQ
                     ITRDPTISGTSG"
     gene            5047..>5851
                     /locus_tag="VIU37_12840"
     CDS             5047..>5851
                     /locus_tag="VIU37_12840"
                     /inference="COORDINATES: protein motif:HMM:TIGR00444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG family protein"
                     /protein_id="HEY6014895.1"
                     /translation="MLDALVAEARLRWGFEPAMGLQIVAAEQLTASPIEASRPLVIVP
                     LAKLRVAPAGAEPAIPLPGRAGPSGREPLALLRRLYPAEHPVGRFGAPDGTSVGALDA
                     DGLADPVYLAPVAPELAVSGPWAMPWISARLRQPDGCPWDREQTHASLRKHLLEEAYE
                     VYDALDAGATPELAGELGDLWLQIVLHAQLAAEAGVFDLADVQAAIATKIVRRHPHVF
                     GEAEARTASDVNRQWERIKAAERADAAAGTPGSDPTAPKSALDGISRSLP"
BASE COUNT          806 a         2180 c         2022 g          843 t
ORIGIN      
        1 ccgttcgacg gccgctactg gagcctcgat gtcttcgagg gtccgctgcg cggcctcgcg
       61 accatcgagt gcgaggccga cgacgaagca gagctcgcgg cactcgtacc gcccgattgg
      121 gccttgcgcc ggcgctacgg gctggtccag gtccatacgc tgccggactt cctggtcttc
      181 tcagcggccc cgctgcggct ggccggggtc ccggtcgtcc tcgacctcca cgaggcgatg
      241 cccgagttct tccgcagccg gttccgcggc cgggccggac ggttcggcta cgcgctgttg
      301 cgcgcccagg aggcggcgtc gattcggttc gccaccgcgg tcatcacggt caacgacgcc
      361 ctcggggacc ggctccgcga gctgggcgtg ccggcctcga agctgacgat catcctgaac
      421 gcgccctcgc tcgcccggtt cgatgccgag cgccagccgg ccagggcgtt catggccgac
      481 ggcacgctgc ggctcgtcta tgccggcgcc ctcagcccca tctacgagct ggacgtggtc
      541 ctcgtcgcga tcgctcgcct cgccgagagc cggccggagc tcccggtcca cctcgacctg
      601 tacggccggg acttcgcgga ggtcccgctc cgggagctgg cgaccgagct cgggatcggc
      661 gatcgcgtca cgttccacgg ccggatcccg atcgaggacg tcccggcggc gatcgcggcg
      721 gccgatgtcg gcctggcgcc gacgcggcgt tcggtcttca ccgacttctc gctgtcgacc
      781 aaggccttcg agtacgccgc gatgcggcgg ccggtcgtgg cgtcgcgcct gccgatggtc
      841 gagcgaacgt ttggcgacga tgtctccacc tacacggccg gcgacgccga cgacctggtc
      901 ctggcgctgc tccacctggt ggacgatccc gccgcccgcg acgaccaaat cgcgcgcgcg
      961 ttcgagcgcg tacgagatcg tctcagctgg gagggagagg cgcgacggta cctgggcctc
     1021 gtcgaccgcc tggtgaggcg ttgacggtgg cgggccgagc gactgcgccg gggcccaggg
     1081 agggcttccg cccggatatc gaggggctcc gcgcgatcgc cgtcgtgctc gtgctcctgt
     1141 atcacgcggg tgtcccgggc gtcaccggcg gctacatcgg cgtcgacgtc ttcttcgtcc
     1201 tgtccgggtt cctgatcacg ggactcctgg tccgcgagct ggaggcgacc ggcacgatct
     1261 cgctggccgg gttctacgcc cggcgcgtcc gccggctgct ccccgccgcc atgctgctga
     1321 tcctggtcac ggtcgttgcc tcgacgctgg tcctctcgcc gctccgggcc ggcgacgtgg
     1381 cgagtgacgg gatcgccgcc gcgctctacg cgtccaacct gcggttcgcg gtccaggcca
     1441 ccgattacct gcagtcgggg ctcccgccgt cgccgctgct ccatctctgg tcgctcggcg
     1501 tggaggagca gttctacctg ttctggccgg cgttgctcct gctcgtcacg cgcggcgtgg
     1561 ccggggccgg gtcgtggcgg ctgcggcgga tcggactgct cgcggcgatc gtgggcggcg
     1621 cgtcgttcgt gctgtcggtg tggctgaccg gcgccaacga gccctgggcg ttcttctcgc
     1681 tgccgacccg ggcctgggag ctcgggatcg gggcgctcct cgcggtcgga gccggacggc
     1741 tcgcccggct ccccacgccg gtggcgacga ccgccggctg gctcggcctg ggcctgatcg
     1801 cggccggcgg gctcgtgatc gatacgagca cgccgttccc cggcgtcgcg gcattgctcc
     1861 cgacggtcgg ctgcgcgctg gcgatgctgc ccggcatgac cggccaggcc agcctcccgg
     1921 cccgcctgct gggctgggcg ccggcacggt tcatgggtcg catctcgtac tcgctctacc
     1981 tgtggcactg gccgctgctc gtcctgccgc tcgccctcgc cggtgggtca ctgccgctcg
     2041 tcgcgcgggt cggcctgatg gtgctcgccg tcccgatcgc ctgggcgagc cagcactggc
     2101 tggaggaccc gatccggcac ggccggatcg tggggatcgt gccgcgccgg aacctcgccc
     2161 tggccggcgc cgtttcgctg gcggtggcga cgacctcgct cgggctcggg ttcgtcacca
     2221 cgcagcgcct ggcggccgcg accgccgacg tcgcggatcc ggcgggcaac gccgccgccg
     2281 aggccggcga cgccccgatc ccgaacctcg tcgtgggcac gccgtcgccg gccgggacgc
     2341 tcccgccgcc gcccggcggg ccggttccgg ccggcctgac gccgtcgctc gcggcggccc
     2401 gcaccgacca gccggagacc tacgccgacg gctgtcacct cgaccagccg tcaacatcga
     2461 tccccgattg cgtctatggc gaccccgggt cctccaccgt cgtcgtcctg ttcggcgatt
     2521 cgcacgccgc cgagtggttc ccggcgctgg ctcggctcgc gaccgaccgg cactggcgcc
     2581 tcgtgtcgtt gaccaagagc gcatgtaccc ccgcggagat gaccatctgg aactcggact
     2641 tcaagcggcg atacgacgaa tgcgatcgct ggcgcgaggc cgtcctggct cgcgtccagg
     2701 cagagcatcc ggatctcgtg atcgtcggta gcagccaccc gtacaccgtc acgggaagca
     2761 acggacccgg gccgtccgat tcgggtcagg cgctcaaggc cggcctgacc cagattctgc
     2821 tgcggcttcg tccactggcg ggcgcggtcg ctttgatcgg cgacaccccg aaattcgatg
     2881 ccgacccgcc tgactgcctt tcgcagcacc tcgacgacgt cctggcctgc gcggagccgc
     2941 gcgccgggac catcgacacc cgatggatcg gcatcgaagc tgcccttgcc gcccaggccg
     3001 gcgcgacgtt cgtcgatccg accgattggg cctgccccac cgacccgtgc ccggtggtga
     3061 tcgggcggta cctcgtcttc cgcgaccagc accacctggc gacgccgttc gtcaccgcgc
     3121 tacggacgaa gctggcggcg gcgctgccgc tgccgggcag ctgagcgtgc gtcacgctcc
     3181 ggccggccac ggcctgcacc ggcgggccct gcagcggcgg cccgcgcatc gaagtaccat
     3241 accttgcccg ccacaacccg gcgccagccg gccatgccat agggacccac ccagctcatg
     3301 accttcaaag ccaagcccgt cgtcaagcgc gcccagcgcc cgtcgatcga cagccacgcg
     3361 cgacggaacc tgtatctcaa catcggtttc ggtctcgtga ccgtggccgc ggtcgtcatc
     3421 ctgctcgtgg ccgcggggct cagctggtac aacgaccacc tcgcgtcggt cggcagcgtc
     3481 aacggccagt ccatcaccaa ggacgagtac gccgatcgct acgccatcga gagctggcgg
     3541 ctcgaccagg tggagcaggc catccggacg gaggtcgccg cgggccacct gaccgacacc
     3601 cagggtcagg gccagctcca atcggtcagc caggctcgcc agaacctcgc cagcgacacg
     3661 ctcgagcgcc tgatcgacaa ccggctgcag gccagcctcg ccgccgaggc gggcatcacc
     3721 gtgacgccgg ccgacgtcga cgcccgcttg atcaaggaag ccacgacgcc cgagacgcgc
     3781 catgcctggg tcatcgaggt ccagccggag accgacgccg gggccgtcga gccgaccgcc
     3841 gcgcagaagg ccgcggccaa ggccaaggcc gacgcggcgc tcaaggacct ccagggcggc
     3901 aaggcctggg agaccgtcgc ccaggcggtc tcgacggacg cctcgacctc gccgaaatcg
     3961 ggcgacctgg gctggatccg ctcgaccgac acccagctcg acgccgagtt ccagaaagcg
     4021 ctgttcgccg ccgcggccaa cgctccgacc gcagtggtcg agggggccga cggcatctac
     4081 cggatcggcc gcgtgaccga gatcgccccc gagaccgtgg acaccgagta ccagtcgaag
     4141 ctgaccacgg ccgggatcga cctggccaag tatcgccagg tcgtccaggg cgacgtcatc
     4201 caccagaagc tgtcggacaa ggtcgtggcc gacgtgaccg gaccgggacc gcagcggcac
     4261 gtccaggaga tctacatcca gcagccgacc acgctgccgg gggccgacgc gatcaaggtc
     4321 cgccacatcc tctactcgcc aaaggacgac ccgagcggcg ctgcggcgct cgaccccaac
     4381 gacccggcct ggaaggccgc caaggacgag gcggacgcga cctaccagaa gctccaggcg
     4441 gacccgagcc tgttcgactc gatcgcccga acccagagcg acgaaacgag tgaccgaggc
     4501 gcgaccggca cgggtggcaa gttgccgtac ttcgactcgt cgagccaggt ggatgcggcc
     4561 ttcaaagccg cgatcctcaa gccggggctt cagccgggcc agatcctcga gcccgtgaag
     4621 tcggcgttcg gctggcacgt catccaggtc atgtaccgtc cgccggacct cgaatggctg
     4681 aacgggctga ggaccaaggc ggacggcggt gccgatttcg ccacgctggc ccgggacaac
     4741 tcggaggcga agtccgccgg caagggcggt gacgagggct ggatcgccaa gggccagctc
     4801 aacgcgtcgc tcgaggccgg gatcttcggc acgccgatcg ggtcggtctc gagcgtcatt
     4861 gccgtgccga acgacgggat ctacctgttc aaggtgctcg ccgaggagac ccggacgccg
     4921 gaaggccagc agctcgacac gatcaagtca tcggcgttct ccaactggta cacccagaag
     4981 aaggacgcgg cccagatcac gcgcgatccg acgatttcag gcacgtccgg ctagagggag
     5041 gcgccgatgc tcgacgcgct cgtcgccgag gcgcgcctcc gctggggctt cgagccggcc
     5101 atgggcctcc agatcgtggc cgccgagcag ctgaccgcga gcccgatcga ggcgtccagg
     5161 ccgctcgtca tcgtgccgct cgcgaagctg cgcgtcgcgc cggccggggc tgagccggcc
     5221 atcccgctgc ccggtcgcgc cgggccgtcc ggtcgcgagc cgctggcgct cctgcggcgg
     5281 ctctacccgg ccgagcatcc cgtcggccgg ttcggcgcac cggacgggac gagcgtcggc
     5341 gccctcgacg cggacggcct ggccgatccc gtctacctcg cgccggtggc gcccgagctc
     5401 gccgtctcgg ggccctgggc catgccctgg atctcggcac gccttcgcca acccgatggc
     5461 tgcccgtggg accgcgagca gacgcacgca tccctgcgca agcacctgct cgaagaggcg
     5521 tacgaggtct acgacgcgct cgacgcgggc gccacgccgg agctggccgg cgagctcggc
     5581 gacctgtggc tgcagatcgt gctgcacgcc cagctcgccg ccgaggcggg ggtcttcgat
     5641 cttgccgacg tccaggccgc gatcgcgacg aagatcgtcc ggcggcaccc gcacgtgttc
     5701 ggcgaggccg aggcgcggac cgcgtcggac gtgaatcggc aatgggagcg gatcaaggcc
     5761 gccgagcgcg ccgacgccgc cgccggaacg cccggctcgg atccgaccgc cccgaagagt
     5821 gccctcgatg gcatctcgcg ctcgctcccg g
//
LOCUS       DATDDI010000879         2872 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_39579, whole genome shotgun sequence.
ACCESSION   DATDDI010000879 DATDDI010000000
VERSION     DATDDI010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39579"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            21..605
                     /locus_tag="VIU37_12845"
     CDS             21..605
                     /locus_tag="VIU37_12845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014896.1"
                     /translation="MTEPSSGTTSPLPAEPAEPADTDPAIAPDEALEADLDENGRDED
                     AGEFDEDEDETEAEEQEGLESEPSVGETTVPGVAARAGGAAVRRQAGAPTVAPRVPTQ
                     SELAVRVTDNQSKVFVIATVVVFVAILAFGVFAGNGGILTPRATPAPTSSASAAPSAS
                     VAPSVSAGTSASPATSASPAPSASPSVAPSASPS"
     gene            662..1321
                     /locus_tag="VIU37_12850"
     CDS             662..1321
                     /locus_tag="VIU37_12850"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:TIGR00080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEY6014897.1"
                     /translation="MRTGGRDFGRERAAMVARQLRDRGIRDERVLEAMGAIPREAFVE
                     EQDRSLAYADEALPIEAGQTISQPYMVARMTELLDVRPGERILEIGTGSGYQAAVLAK
                     LGARVTSIERQAGLVPAARARLRDLGLGDLVDVRVADGSLGDPGGAPWDGIIVTAAAP
                     SIPAGLRDQLADGGHLVIPVGPRARQILMDVTRHGDEWSEHPDGACVFVPLIGAGGFG
                     G"
     gene            1346..2419
                     /locus_tag="VIU37_12855"
     CDS             1346..2419
                     /locus_tag="VIU37_12855"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEY6014898.1"
                     /translation="MTHVFVAPHPDDVALSCGGLIASLRELGQNVTIITVYSGNGDGD
                     RLTGYQREALGFGSKAIWPVTEAFNRSDILADWPTASLVPSWAATEEGLEATQSEADA
                     AAKRFWQRSSWYRRASVRNESLADQPVMDDLSTQGAVLTDEVMDAAAAGDLMARRRVE
                     DERFAYFAEASIVFLDLPDAVFRGYEGDDQLLGTPRDDDPAPVELLRREIARLEPQKV
                     YFPLGVGGHVDHQLCREAGIQLLQDGRRWVMPGPEYAGIVTFYEDFPYAWWNDFRGLA
                     DLGPNPFAGLPADVSLRPEFADITDQLERKIMGIDLYRSQIERLFDDTRAMADATRAY
                     GRAIAELGGVDGSAERYWASGRV"
     gene            2436..>2872
                     /locus_tag="VIU37_12860"
     CDS             2436..>2872
                     /locus_tag="VIU37_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014899.1"
                     /translation="MAMERWSRREVVALAGVVLAGIAIRLALLPTEGLRADTDQFTGW
                     VHSIATNGLGTLYGPQAAGPVTFGPVMAYVWAVLATIEPAFRTATDASDPLVRELMKL
                     PASLADIGLGLLVAYALRARPGWAVLGAAAILLHPAVIDVSAW"
BASE COUNT          387 a         1048 c         1038 g          399 t
ORIGIN      
        1 cccaggagtg acaccaccgc atgaccgagc catcgtcggg caccacgagc ccgctgcctg
       61 ctgaaccggc cgagccggcc gataccgatc ccgccatcgc gccggacgag gcgctcgagg
      121 ccgacctcga cgagaacggc cgggacgagg acgccggcga gttcgacgag gacgaggacg
      181 agaccgaggc cgaggagcag gaagggctcg aatccgaacc gtccgtcggc gagacgacgg
      241 tcccgggagt cgcggcgcga gcgggcgggg ccgcagtcag gcgccaggcc ggcgccccca
      301 ccgtggcccc ccgcgttccc acgcaatcgg agctggccgt cagggtcacc gacaaccagt
      361 cgaaggtctt cgtgatcgcg acggtcgtgg tgttcgtggc gatcctcgcc ttcggcgtgt
      421 tcgccgggaa cggcgggatc ctgacgcccc gggcgacccc ggctccgacg tcgtccgcat
      481 ccgcggcccc gtcggcatcg gtggcgccga gcgtctcggc cggcaccagc gcatccccgg
      541 ccaccagtgc ctcgcccgcc ccgagcgcga gcccgtcggt cgccccgtcc gcctcgccgt
      601 cctgacctga tcgccccggc ggcggggcca cgcgcggacg cccgcggcgt accctcgtgc
      661 gatgcggacc ggtgggcgcg acttcgggcg tgaacgggcg gccatggtcg ccaggcagtt
      721 gcgcgaccgc gggatccggg acgagcgcgt cctcgaggcg atgggcgcga tcccccgcga
      781 ggccttcgtg gaggagcagg atcgctcgct cgcctatgcc gacgaggccc tgccgatcga
      841 ggccggccag acgatcagcc agccatacat ggtcgcgcgc atgaccgagc tcctcgatgt
      901 gcggccgggt gagcggatcc tcgagatcgg gacggggtcg ggctaccagg cggcggtgct
      961 cgcgaagctc ggcgcccgtg tcacgtcgat cgagcgccag gccgggctgg ttccggcggc
     1021 ccgggcgagg ctccgcgacc tcggcctggg cgacctcgtc gacgtccggg tcgcggacgg
     1081 gagcctcggc gatccgggcg gcgccccctg ggatgggatc atcgtgacgg ccgcggcgcc
     1141 gtccatcccc gccggcttgc gcgaccagct cgccgatggc ggccacctgg tcatcccggt
     1201 cggcccccgc gcgcggcaga tcctcatgga cgtgacccgc cacggcgacg aatggtccga
     1261 gcatccggac ggtgcctgcg tcttcgtacc gctgatcggt gcgggtgggt tcggcggctg
     1321 agggcttggg tatactcgcc cggccatgac ccatgtcttt gtcgcacccc acccggacga
     1381 cgtcgccctc tcgtgcggcg ggctgatcgc gagcctccgc gagctcggcc agaacgtcac
     1441 gatcatcacg gtctactcgg gcaacggcga cggggatcgg ctgaccggct accagcggga
     1501 ggcgctcggg ttcggctcga aggcgatctg gccggtgacc gaggcgttca accggagcga
     1561 catcctggcc gactggccga ccgcctcgct cgtgccctcg tgggcagcca cggaagaggg
     1621 tctcgaggcc acccagtccg aggccgacgc ggccgccaag cgcttctggc agcgctcctc
     1681 gtggtatcgc cgggcgagcg tccgcaacga atcgctggcc gaccagccgg tgatggacga
     1741 cctgtcgacg cagggcgccg tcctcacgga cgaggtcatg gatgccgccg cggcgggcga
     1801 cctgatggcc cgacggcggg tggaggacga gcggttcgcc tacttcgccg aggcgtcgat
     1861 cgtcttcctg gacctgcccg acgcggtctt ccgagggtac gagggcgacg accagctgct
     1921 cggcaccccg cgcgacgacg accccgcacc ggtcgagctg ttgcgacgcg agatcgctcg
     1981 cctcgagccg cagaaggtct acttccccct gggcgtcggc gggcacgtcg accaccagct
     2041 ctgtcgcgag gccgggatcc agctcctcca ggacggccgg cgctgggtga tgcccgggcc
     2101 cgagtacgcc gggatcgtga ccttctacga ggacttcccg tacgcctggt ggaacgactt
     2161 ccgcgggctc gccgacctcg gacccaatcc gttcgccgga ctcccggccg acgtcagcct
     2221 gcgtccggag ttcgccgaca tcaccgacca gctcgagcgc aagatcatgg gcatcgacct
     2281 ctaccggagc cagatcgagc ggctcttcga cgacacgcgc gcgatggcgg acgcgacgcg
     2341 cgcctacggc cgggcgatcg ccgagctcgg cggggtcgac ggctcggctg aacggtactg
     2401 ggcctccggc cgcgtctgac gcgatgacgg ccggcgtggc gatggaacgc tggtcgagac
     2461 gcgaagtcgt cgcgctggcg ggggtggttc tcgccgggat cgccatccgc ctcgcgctcc
     2521 tgcccacgga agggctccgc gccgacacgg accagttcac cggctgggtc cattcgatcg
     2581 cgacgaacgg gctcgggacg ctgtacggcc cgcaggctgc cggccccgtc acgttcggtc
     2641 cggtgatggc ctacgtctgg gcggtcctgg ccacgatcga gccagcgttc cggaccgcca
     2701 ccgacgcgtc cgatccgctg gtccgggagc tcatgaagct ccccgcctcc ctcgccgaca
     2761 ttggcctggg gctgctggtc gcgtatgcgc tccgcgcccg tccgggctgg gcggtgctcg
     2821 gggcggcggc catcctgctg caccccgcgg tcatcgacgt gagtgcctgg tg
//
LOCUS       DATDDI010000880         2316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_393611, whole genome shotgun sequence.
ACCESSION   DATDDI010000880 DATDDI010000000
VERSION     DATDDI010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2316
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393611"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2268
                     /locus_tag="VIU37_12865"
     CDS             <1..2268
                     /locus_tag="VIU37_12865"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY6014900.1"
                     /translation="QSYGVAAAAKSYFGKSLADLTLAQDALLAAIPQSPTKFDLVRNA
                     VPVCLEDVAAGADCTKFKLVVPMDSEVVIRRNYILDLMKTRSYLSGDSHAFAEYDAAK
                     AEPVELVQQVSATWRAPQFVWLVRHQLGQQFCPDTPDNCPKVDAGGYKVTTTLDWNMQ
                     KVAEKWVYVAARAPNASNPTAVLTAKKIPKSAQSWILGLRGHNINNAAAGVIDYRTGD
                     VLAYVGSASYTAKGNAKFQPQFDVLSDGWRQPGSAIKPIDYLIGIDDKTLTASTMLMD
                     VVTDFGQVSAKSSKYTPTQADKLERGPVRLRSALQFSLNVPAIKAAVLTGLDRLFTRT
                     QDFGITYPKTAVPVVSMGIGTLEMHPIDLLGAYGTVADGGVHVPQRLITSIVDSNGTQ
                     VLSTLPQKGARVVSNDAAAIITDILAGNTDTKVNPYWGKWAIYDGKTRRPAAYKTGTT
                     SDNRDVAAYGYLAPPADEKTPALAVGVWMGNSDNTPNDGKLSLDTSAPLWSAILTEIS
                     KGLPISDFHRPDDLEKATVDAFTGLQPGPFTTTTVDEIFIPGTVPTQKETIRVTRQID
                     SATGLLWQDGCAGPMVNKGFFDLTQVDANFPAWQKADAEWGARAARGAGVKGGPEGTR
                     TSYFYNNSFAPFGRTWGAPFAPTQLCPVVPPPVCDPLLGPCGPPCDPFLGPCPAPSSP
                     PPTATVPDVVCQSLEIASANLTASGYAVGNVKPDNPGPNFVVAQEKPGAGTPLPTGNS
                     VDLVLRDRSKVPSCH"
BASE COUNT          404 a          872 c          726 g          314 t
ORIGIN      
        1 cagagctacg gggtggcggc cgcggccaaa agctacttcg ggaagtcgct ggccgacctg
       61 accctcgccc aggacgccct cctcgccgcg atcccgcagt cgccgaccaa gttcgacctc
      121 gtccgcaacg ccgtgcccgt ctgcctcgag gatgtcgccg ccggcgccga ctgcaccaag
      181 ttcaagctcg tggtgccgat ggactcggag gtcgtcatcc ggcgcaacta catcctcgac
      241 ctgatgaaga cgcgcagcta cctgagcggc gacagccacg ccttcgccga gtacgacgcg
      301 gccaaggcgg agcccgtcga gctcgtccag caggtctccg ccacgtggcg ggcaccgcag
      361 ttcgtctggc tcgtccgcca ccagctgggc cagcagttct gcccggacac cccggacaac
      421 tgccccaagg tggacgccgg tggctacaag gtgacgacca ccctcgactg gaacatgcag
      481 aaggtcgccg agaagtgggt gtacgtcgcg gcgcgagccc ccaacgcctc gaacccgacc
      541 gccgtgctga ccgccaagaa gatccccaag tcggcccaga gctggatcct cggcctgcgc
      601 ggccacaaca tcaacaacgc agcagccggc gtcatcgact accggaccgg cgacgtgctg
      661 gcctacgtcg gcagcgctag ctacacggcc aagggcaacg ccaagttcca gccccagttc
      721 gacgtcctgt ccgacggctg gcgccagccc ggatccgcca tcaagccgat cgactacctg
      781 atcgggatcg acgacaagac gctgaccgcc tcgaccatgc tgatggacgt cgtgacggac
      841 ttcggccagg tctccgccaa gtccagcaag tacacgccca cccaggccga caagctcgag
      901 cgcggaccgg tccgcctgcg ctccgcgctc cagttctcgc tcaacgtccc ggcgatcaag
      961 gcggcggtcc tgaccggtct cgaccggctg ttcacccgga cccaggactt cgggatcacc
     1021 tacccgaaga cggcggtgcc ggtcgtgtcg atggggatcg gtacgctcga gatgcacccg
     1081 atcgacctgc tgggcgccta cggcacggtc gccgacggcg gcgtccacgt cccgcaacgc
     1141 ctgatcacct cgatcgtcga cagcaacggc acgcaggtcc tcagcacgct gccccagaag
     1201 ggcgctcgag tggtgagcaa cgacgcggcc gcgatcatca cggacatcct ggccggcaac
     1261 accgacacga aggtcaaccc gtactggggc aagtgggcga tctacgacgg caagacccgc
     1321 cggccggcgg cctacaagac cgggaccacc agcgacaacc gcgacgtggc cgcctacggc
     1381 tatctcgccc cgccggccga cgagaagaca cccgccctcg cggtcggcgt ctggatgggc
     1441 aacagcgaca acacgccgaa cgacggcaag ctctcgctcg acacgtccgc gccgctctgg
     1501 tcggccatcc tgaccgagat cagcaagggt ctccccatct cggacttcca tcgcccggat
     1561 gatctggaga aggccacggt cgacgcgttc acgggcctcc agccgggtcc gttcacgacg
     1621 accacggtcg acgagatctt catcccgggc accgtgccga cccagaagga gacgatccgg
     1681 gtcacccggc agatcgactc ggccaccggg ctcctctggc aggatggctg cgccgggccg
     1741 atggtgaaca agggcttctt cgatctcacc caggtggatg ccaacttccc cgcctggcag
     1801 aaggccgacg cggaatgggg cgcgcgggcc gccaggggcg ccggcgtcaa gggcgggccc
     1861 gaagggaccc ggacctcgta cttctacaac aactcgttcg cgccgttcgg gcgcacgtgg
     1921 ggcgcgccat tcgccccgac acagctgtgc ccggtcgtcc cgccgccggt ctgcgatccc
     1981 ctcctcgggc cgtgcggtcc cccgtgcgac ccgttcctcg ggccgtgtcc tgcgccgagc
     2041 agtccgccgc cgacggcgac cgtccccgac gtcgtgtgcc agtcgctcga gatcgccagc
     2101 gccaacctga ccgcgtccgg ctatgcggtg ggcaacgtca aacccgacaa cccgggcccg
     2161 aatttcgtcg tggcgcagga gaaacccggg gccggcactc ccctgcccac cggcaacagc
     2221 gtcgacctcg tcctgcgcga tcgctcgaag gttccctcct gccactagcc ggcagcggcg
     2281 tgcacgtccg ggacgaggcg cccggtgcgg tcgcgc
//
LOCUS       DATDDI010000881         1687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_393660, whole genome shotgun sequence.
ACCESSION   DATDDI010000881 DATDDI010000000
VERSION     DATDDI010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393660"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..1654
                     /locus_tag="VIU37_12870"
     CDS             149..1654
                     /locus_tag="VIU37_12870"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEY6014901.1"
                     /translation="MTIELAQPATLPILSHWIDGRPVEVLPEQTGPVFNPATGAQIAR
                     VPRGGATEVDTAVAAARAAFPGWRDTPLIARSQVFFAFRELVWRHREELAALITRDHG
                     KTFPDALGEVLRGLETVEFACGLPVQLAGLNTPNVATKVDAYTLRGPLGVTAAITPFN
                     FPVMVPMWIYPIALACGNTLVWKPSSHTPGATQLQAELWKEAGLPDGVFNVVYGGREA
                     VSAIVEHPDVAAIQFVGSTAVGRYVYETGTRLGKRVGAYTSAKNAMIVLPDADMELTA
                     DAAVAAGFGSAGERCMAQTLVIAVGDAAERLRPLMLERIAGLKVGPGMEPGMDMGPLY
                     SAEHRESVISWIDKGEAEGAELVVDGRPFHHPDGPDGYFLGVTLFDHVTPSMEIYQEE
                     IFGPVLGIVHAATYDEALELVNGHKYANGTAIFTTDGGAARRFKLEVDVPMIGVNVPI
                     PVPAGYLSFGGAKESALGDLAMRGSSNPSIGSSICRAWRGAAFLRGWPTGN"
BASE COUNT          248 a          624 c          576 g          239 t
ORIGIN      
        1 ttcggggcgg gcgcccgcac cctgcggacc ttcgtcaagt cgtatcacga cctccaggcc
       61 gcgatccgcg acctggtcct gcccgatccc gacgtccgga tcgcgtgacc catccctccc
      121 ggcagccacc gcaaggagac ccgaccccat gaccatcgag ctcgcgcagc cggcgaccct
      181 gcccatcctc agccactgga tcgacggccg gccggtcgag gtcctcccgg agcagaccgg
      241 gccggtgttc aacccggcga ccggcgccca gatcgcgcgg gtcccgcgcg gtggcgctac
      301 cgaggtcgac accgccgtgg cggcggccag ggccgccttc ccgggctggc gggacacccc
      361 gctcatcgcc cggagccagg tcttcttcgc cttccgcgag ctcgtctggc ggcatcgcga
      421 ggagctcgcg gccctgatca cgcgcgacca cggcaagacc ttcccggacg cgctcggcga
      481 agtcctgcgc gggctcgaga cggtcgagtt cgcgtgcggg ctgccggtcc agctggccgg
      541 cctcaacacg ccaaacgtcg ccaccaaggt cgacgcctac acgctccgcg gcccgctcgg
      601 cgtcaccgcc gcgatcacgc cgttcaactt cccggtgatg gtcccgatgt ggatctaccc
      661 gatcgcgctg gcctgcggca acacgctcgt ctggaagccg tccagccaca cgcccggcgc
      721 gacccagctc caggccgagc tctggaagga agccgggctg ccggacggcg tgttcaacgt
      781 cgtgtacggc ggccgcgagg cggtcagcgc gatcgtcgag cacccggacg tcgcggcgat
      841 ccagttcgtg ggctcgaccg cggtcggccg ctacgtctac gagaccggca cgaggctggg
      901 caagcgcgtc ggcgcctaca cgtcggccaa gaacgcgatg atcgtcctgc ccgacgccga
      961 catggagctc accgccgacg cggccgtggc cgccggtttc ggctcggccg gcgagcgctg
     1021 catggcgcag acgctggtca tcgcggtggg cgacgccgcc gagcggctgc ggccgctcat
     1081 gctcgagcgg atcgccgggc tcaaggtcgg cccgggcatg gagcccggca tggacatggg
     1141 cccgctctat tcggccgagc accgcgagtc ggtgatcagc tggatcgaca agggcgaggc
     1201 cgagggcgcc gagctcgtcg tcgacggccg gccgttccac cacccggacg ggcccgacgg
     1261 gtacttcctc ggggtgaccc tgttcgacca cgtgaccccg tcgatggaga tctaccagga
     1321 ggagatcttc ggaccggtcc tcgggatcgt ccacgccgcc acgtacgacg aggcgctcga
     1381 gctcgtcaac ggccacaagt acgcgaacgg gacggcgatc ttcacgaccg acggcggcgc
     1441 cgcacgccgc ttcaagctcg aggtcgacgt gccgatgatc ggggtcaacg tccccatccc
     1501 ggtgccggcc ggctacctct cgttcggcgg cgccaaggaa tccgccctcg gcgatctcgc
     1561 catgcgcggc tcgagcaatc cttcgattgg gtcatcgatt tgcagggcct ggcgcggagc
     1621 ggcgtttttg cgtggctggc ccacgggaaa ctgacgattg gcctggagga gcaccgtgaa
     1681 ggcgccc
//
LOCUS       DATDDI010000882         1501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_185645, whole genome shotgun sequence.
ACCESSION   DATDDI010000882 DATDDI010000000
VERSION     DATDDI010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185645"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..627)
                     /gene="moaC"
                     /locus_tag="VIU37_12875"
     CDS             complement(34..627)
                     /gene="moaC"
                     /locus_tag="VIU37_12875"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF006870.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEY6014902.1"
                     /translation="MDRKPAPRAERRRLSHVDRAGRPRMVDISDKAVTARRAVAEAAV
                     AVSPETMSLVIDGGGAKGDVLSVAELAGVMGAKRTSELIPLCHPLALTDLVVSITPDR
                     AAGVLRIRAEAATTGQTGVEMEAMTAASVAALTVYDMVKGVERGVEIRTIHLVSKTGG
                     KSGTWVRAPGPVDDRPTRPRPGGRVAGRVGPKRPGRA"
     gene            complement(642..>1501)
                     /locus_tag="VIU37_12880"
     CDS             complement(642..>1501)
                     /locus_tag="VIU37_12880"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEY6014903.1"
                     /translation="REEGSDLRTGDTLLDAGAAIGAAGVALLAGAGVERIRVHRRPRV
                     AVLATGDEVRPPGTDLGPAGIPDANGPGLRAQVAAAGAEAIDLGIAADELDDVLGRLR
                     AGLEAGADALVVSGGVSVGPYDVVRTAMETLGQVDLWRVAVQPGKPFAFGTAQGPAGG
                     RPVLVFGLPGNPVSSAVTFELFVRPAIRRLAGRPDVVRPADRAVLVEPVTKGHGRRAY
                     LRVAARRDEAGAPVRDRDGRVIVRLAGGQGSHVISALAGADALAIIPEADDSLPAGAE
                     VALWWLDQP"
BASE COUNT          185 a          603 c          541 g          172 t
ORIGIN      
        1 tcacgagcgc cgaccgtcgc ggcaccgcgt ggctcacgct cgacccgggc gcttcggtcc
       61 cacccgaccc gcgacgcgac ctcccgggcg cgggcgggtc ggccggtcgt ccaccgggcc
      121 gggagcccgg acccaggtgc cgctcttgcc gccggtcttg gagaccaggt ggatcgtgcg
      181 gatctcgacg ccgcgctcga cgcccttgac catgtcgtag acggtcagcg cggccaccga
      241 cgccgcggtc atcgcctcca tctcgacgcc cgtctggccg gtcgtggcgg cctcggcccg
      301 gatccggagc acgccggcgg cgcggtcggg ggtgatcgac acgaccaggt ccgtcagggc
      361 gagcggatgg cacagcggaa tgagctcgct ggtccgcttg gcgcccatca cgcccgccag
      421 ctcggccacg ctcagcacgt cgcccttggc cccgccgccg tcgatcacca ggctcatcgt
      481 ctcgggcgag acggcgaccg ccgcctcggc caccgcccgg cgcgccgtga ccgccttgtc
      541 cgagatgtcg accatccgcg gccggccggc ccggtcgacg tgcgagagcc ggcggcgttc
      601 ggcgcgagga gctggcttgc ggtccatgcg gtcctccgtg gtcagggctg gtcgagccac
      661 cagagggcga cctcggcgcc cgccggcagg gaatcgtcgg cctcgggaat gatcgccagc
      721 gcgtcggcgc cggccagggc ggagatcacg tgactcccct gcccgcccgc cagccgcacg
      781 atgacgcggc cgtcgcgatc gcggacgggc gccccggcct cgtcacggcg cgcggcgacc
      841 cgcaggtagg ctcgacggcc gtggcccttg gtgacgggct cgacgaggac ggcccggtcg
      901 gccggccgca cgacgtcggg acggcccgcc agccgccgga tggccggccg cacgaacagc
      961 tcgaacgtga cggctgacga caccgggttg cccggcaggc cgaagacgag gaccggccgg
     1021 ccgcctgccg gaccctgcgc cgtcccgaag gcgaacggct tgcccggctg gaccgcgacc
     1081 cgccagagat cgacctgtcc gagcgtctcc atcgccgtcc tgaccacgtc gtacggcccg
     1141 accgacacgc ccccggagac gaccagcgca tccgcacccg cctcgagacc ggctcgcaac
     1201 cggcccagca cgtcgtcgag ctcgtcggcg gcgatcccga gatcgatggc ctcggcaccc
     1261 gcggcggcga cctgcgcgcg gagcccgggt ccgttggcgt ccgggatgcc ggccggcccg
     1321 aggtccgtgc ccggcggcct gacctcgtcg cccgtggcga gcacggcgac ccgcggccgg
     1381 cggtggaccc ggatccgctc gacgcccgcg ccggcgagca acgcgacacc ggcggccccg
     1441 atcgccgcgc cggcgtcaag cagcgtgtcg cccgttcgca ggtcgctccc ctcctcgcgc
     1501 a
//
LOCUS       DATDDI010000883         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_435159, whole genome shotgun sequence.
ACCESSION   DATDDI010000883 DATDDI010000000
VERSION     DATDDI010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435159"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..1644
                     /gene="ilvB"
                     /locus_tag="VIU37_12885"
     CDS             16..1644
                     /gene="ilvB"
                     /locus_tag="VIU37_12885"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEY6014904.1"
                     /translation="MASRIQSSQRGRKSSHKALRPLRVRPPLNARATGKVGVCMGTSG
                     PGATNLVTGIATAQLDSIPLVAITGNVPSALIGKDAFQEIDINGITLPMTKHNYLVRN
                     ADDLPRVLAEAFHIARTGRPGPVHVDITKDALQQETRATHPTEAEVVAGLPGFRPNFE
                     GHPKQLKTAAKEIAHAKRPLILAGHGVLIAQAWDELRALAEKAQIPVAWTLLGIGVMD
                     ETHPLAYGYMGMHGWKHVNRAIQSADLLVAIGMRFDDRVTGNVRTYAPYARIIHVDID
                     PAEIGKNVAVEVPIVGDAGRVLRALTPMVAAVDPRTRADYFAQLAEWKADSVASSWHG
                     SGAWRDGLLSADYVIERIGELTSHEATYVADVGQNQMWLARYAGFRHPNTHVSSGGLG
                     TMGFSVPAAMGAALGCPERETWAITGDGGFQMTSQELMTLVADHIPVKIALLDNKKLG
                     MIRQWQEIIYAGNYHSSSLPGPDFAKLAEAYGIPAFRARKPTDVDEAIRSAQAVDGPA
                     LIWFEIAEEQNIFPMMPAGKGLSDLIENWGGADE"
BASE COUNT          293 a          625 c          592 g          222 t
ORIGIN      
        1 agtgacacgt cgggaatggc gtcgcgcatc cagtcctccc agcgcggcag aaagtcctcc
       61 cacaaggcgc tacgtccgct cagagtcagg ccgccgctga acgcccgggc caccggcaag
      121 gtcggcgtct gcatggggac gtccggaccg ggcgccacca acctcgtcac cggcatcgcc
      181 acggcccagc tcgactcgat ccccctcgtc gcgatcaccg gcaacgtccc ctccgcgctg
      241 atcggcaagg acgccttcca ggagatcgac atcaacggca tcaccctgcc gatgacgaag
      301 cacaactacc tcgtccgcaa cgccgacgac ctgccgcggg tcctggccga ggccttccat
      361 atcgcccgga ccgggcggcc gggcccagtc cacgtcgaca tcaccaagga cgcgctccag
      421 caggagaccc gggcgacgca cccgaccgag gcggaggtcg tcgccggcct gccgggcttc
      481 cgccccaact tcgagggtca ccccaagcag ctcaagacgg ccgcgaagga gatcgcccac
      541 gcgaagcgcc cgctgatcct cgccgggcac ggggtcctga tcgcccaggc ctgggacgag
      601 ctccgcgcgc tcgccgagaa ggcgcagatc ccggtcgcct ggacgctgct cgggatcggg
      661 gtcatggacg agacccatcc gctggcctac ggctacatgg ggatgcatgg ctggaagcac
      721 gtcaaccggg cgatccagag cgccgacctg ctggtcgcca tcggcatgcg ctttgacgac
      781 cgggtgacgg gcaacgtgcg gacctacgcg ccgtacgccc ggatcatcca cgtcgacatc
      841 gacccggccg agatcggcaa gaacgtggcc gtggaggttc cgatcgtggg tgacgcgggg
      901 cgcgtgctgc gggccctgac ccccatggtg gccgcggtcg acccacggac ccgggccgac
      961 tacttcgccc agctggcgga gtggaaggcg gactcggtcg cgtcgagctg gcacggctcg
     1021 ggcgcctggc gcgacgggct cctgtcggcc gactacgtga tcgagcggat cggcgagctc
     1081 acgtcccacg aggcgaccta cgtcgccgac gtcggccaga accagatgtg gctggctcgc
     1141 tatgccgggt tccgccaccc gaacacgcac gtcagctcgg gcggcctggg cacgatgggc
     1201 ttctcggtcc cggccgcgat gggcgcggcg ctgggttgcc ccgagcggga gacctgggcg
     1261 atcaccggtg acggggggtt ccagatgacc tcccaggagc tgatgaccct ggtcgccgac
     1321 cacatcccgg tcaagatcgc gctgctcgac aacaagaagc tcgggatgat ccgccagtgg
     1381 caggagatca tctacgcggg caactaccac tcctccagcc tgcccgggcc ggacttcgcg
     1441 aagctggccg aggcctacgg gatccccgcg ttccgggcca ggaagccgac cgacgtcgac
     1501 gaggcgatcc ggtcggcgca ggcggtcgac ggaccggcgc tgatctggtt cgagatcgcc
     1561 gaggagcaga acatcttccc gatgatgccg gccggcaagg gcctgtccga cctgatcgag
     1621 aactggggcg gggccgacga atgagcggcg acccgagttc gaacgggaag gcgcccgcgg
     1681 agccgacggc gcagtcatcg ccggccgggc cgacgcccgc gcaccccacc cg
//
LOCUS       DATDDI010000884         4216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_497798, whole genome shotgun sequence.
ACCESSION   DATDDI010000884 DATDDI010000000
VERSION     DATDDI010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4216
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497798"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VIU37_12890"
     CDS             complement(<1..508)
                     /locus_tag="VIU37_12890"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6014905.1"
                     /translation="MTIPPRPADDPPVAGIRRPRLATGIVAAGFVAILLGLVVFGSLA
                     VEIRGQELSALDAIATPFLHDRASPIRDAIMNGATFIGSDYVILPLLGLALALLVRAR
                     RIPESVFLAVAVAGSVTLNWIMKLTFQRPRPKLPWAHVPPDYSFPSGHSMNSFVLFVG
                     LAVLAWVVF"
     gene            complement(505..1242)
                     /locus_tag="VIU37_12895"
     CDS             complement(505..1242)
                     /locus_tag="VIU37_12895"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6014906.1"
                     /translation="MTNRPSARDDRAPQERPDSRASSTDRGRLTWLLLAAVSYLLFIG
                     LSVVVAQHVVVPFDQSWLDTAHGWTALTPVWRLLSDSANYPLIAIGVGIVLWLLLHGE
                     RREAILVVVVLAAATAGSEAVKQLVGRDRPLGTDPTIPGVVYSYPSGHTLEAATIYGI
                     IAILIWRGRWPRWMKVAIAVVFTVLVVLVGVARVALAEHYPTDVLAGLLAGIGDLAVF
                     AGLTLGHREREQTRPLPLRPHREESAG"
     gene            complement(1372..2958)
                     /locus_tag="VIU37_12900"
     CDS             complement(1372..2958)
                     /locus_tag="VIU37_12900"
                     /inference="COORDINATES: protein motif:HMM:NF042648.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HEY6014907.1"
                     /translation="MDRRAFLIATGRAGLAASAGVLGLAVARALSPGAAIPPRTVAAV
                     GNPRATAPGVVGVRSGPAVAAPAHVNVVSRENALRGTDRWLIGGDLSTIQGYLDHASA
                     APGDRLGLRVDAQASFGVEWYRLGWYGGAGGRLLHVDPAIPANPGQGPLVDPSTGRSE
                     APWQPSLQLPVPNDWPSGMYVAVLRPATGNPGYVPFIVKRPPGDPAPVLFVSAALTWQ
                     AYNTWGGANLYDASMADSPEISSGRRAVQVSFDRPYELHQGAGYQQRWELQFVRWQER
                     EGVDVDYAADLDLELDPGILDGRRLVVFAGHHEYWSRPMRTALETAVASGVNVVFLSA
                     NEVYWQVRLEASPLGPARRITCYKSRLLDPVAATRPELTTCRWRERPVNDPEAPLIGQ
                     MYGHIVRRPGDWVAAQTDHWLYEGTGLRAGDHLVNLVGQEYDSYFPDLGNPGTIILAR
                     SPIDAVIGADQRVGRYASPAVHNATLYEAASGATVFAAGTFQWSWAIDEFGDRSYRGA
                     ATPYDERVVRMTRNLFDRLG"
     gene            complement(3124..3249)
                     /gene="tatA"
                     /locus_tag="VIU37_12905"
                     /pseudo
     CDS             complement(3124..3249)
                     /gene="tatA"
                     /locus_tag="VIU37_12905"
                     /inference="COORDINATES: protein motif:HMM:TIGR01411.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
     gene            complement(3314..>4216)
                     /locus_tag="VIU37_12910"
     CDS             complement(3314..>4216)
                     /locus_tag="VIU37_12910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014908.1"
                     /translation="APVGAGAPDAGPIEALDAGSVSLVIRTSSLRLPTPTTRAVAFAT
                     ASGLLVVGGLTPGGTTGRVIRVPFGGGAASVVGRLAHPVHDAGGALLHGSMLVLGGGA
                     STQDAWVQRVAVDGPAAVQGRLPSPRADLAAVGAGSRVVVVGGGAAGRADARVLVTTD
                     GSRFTVAARLPVPVRYAAVAVVGSRVLVIGGASAAGDTAVIQSVDLVRGIAAVVGRLP
                     ESISHATALLVGGVVVVVGGRHAGRALDSVLEVDPTSLAVRVAGRLPRAESDAAGVVV
                     DGVGYLVGGETDRPLATIVTIRAA"
BASE COUNT          642 a         1534 c         1530 g          510 t
ORIGIN      
        1 cgaagacgac ccacgccagc accgccaatc ccacgaacag cacgaacgag ttcatcgaat
       61 gcccgctggg aaagctgtag tcgggcggga cgtgcgccca gggcagcttc ggccggggcc
      121 gctggaaggt cagcttcatg atccagttga gggtcacgct gccggcgacc gcgacggcca
      181 ggaagaccga ttccgggatc cgccgggcgc gcaccaggag ggccagggcc aggccgagga
      241 gcggcaggat cacgtagtcg gaaccgatga atgtggcgcc gttcatgatc gcgtcgcgaa
      301 tgggcgacgc ccggtcgtgg aggaacggcg tggcgatcgc gtcaagggcc gacagctcct
      361 gaccgcggat ctccaccgcc agggacccga agacgaccag gcccagcagg atggcgacga
      421 agccggccgc gacgatcccc gtggccagcc gtggccggcg gatccccgcg accggcgggt
      481 catccgcggg ccgtggcggg atggtcaccc cgcggactcc tcccgatgcg gccggagtgg
      541 cagtggcctc gtctgctccc gttcccgatg gcccagggtc aggccggcga acaccgcaag
      601 atcgccgatc ccggcgagca gtccggcgag cacgtcggtc gggtagtgct ccgccagcgc
      661 cacccgggcc acgccaacca gcaccaccag gacggtgaac accacggcga tcgcgacctt
      721 catccacctt ggccatcttc cgcgccagat gaggatcgca atgatgccgt agatcgtggc
      781 cgcctcgagc gtgtggcccg atgggtagct gtacacgacg cccggaatcg tcggatccgt
      841 tcccaacggg cggtcccggc cgaccagctg cttcacggcc tcgctgccgg cggtggccgc
      901 cgccaggacg acgaccacca ggatcgcctc gcgtcgctca ccgtgcagca gcagccacag
      961 cacgattccg accccgatgg cgatcaacgg gtagttggcc gagtccgaca ggaggcgcca
     1021 gaccggtgtg agggcggtcc agccgtgcgc cgtgtccagc caggactgat cgaacggaac
     1081 gacgacgtgc tgggcgacca ccacgctcag cccgatgaac agcaggtagc tgaccgcggc
     1141 gaggaggagc cacgtgagac gcccccggtc ggtggatgag gcacgcgaat ccggccgctc
     1201 ctgcggcgcg cgatcatccc gtgccgacgg gcggttcgtc atcagtctcc tcatcgatcg
     1261 cgtcgcgggg gcgactccgg ccccgaaccg tacgcgccgc ccgcgtcagc cggcagtccg
     1321 ggccacgccc ggatgattac ggacccgtgt cggtctcggc cgccgccgct gtcacccaag
     1381 gcggtcgaac aggtttcgcg tcatccggac gacccgctcg tcgtacggcg tcgcggcacc
     1441 acggtaggac cggtcgccga actcgtcgat cgcccaggac cactggaagg ttccggcggc
     1501 gaagacggtt gcgcccgagg ccgcctcgta cagcgtggca ttgtggaccg ccgggctcgc
     1561 gtagcggccc acccgctggt cggccccgat cacggcgtcg atcgggctcc gcgccaggat
     1621 gatggtgccc ggattgccga ggtccgggaa gtaggagtcg tactcctggc cgacgaggtt
     1681 gaccaggtga tcgccggcgc gaaggccggt cccctcgtac agccagtgat cggtctgtgc
     1741 cgccacccag tcgccgggac gccggacgat gtggccgtac atctggccga tcagcggggc
     1801 ctccgggtcg ttgaccggcc gctcgcgcca gcggcaggtg gtcagctcgg gtcgggtcgc
     1861 ggccaccggg tccaggagcc tcgacttgta gcaggtgatc cggcgcgcgg gtccgagcgg
     1921 cgaggcttcg aggcggacct gccagtagac ctcgttggcg gacaggaaca cgacgttcac
     1981 gccggacgcg accgccgtct cgagcgcggt ccgcatcggc cgggaccagt actcgtgatg
     2041 gccggcgaag acgacgagcc ggcgaccgtc gaggatcccc gggtccagct cgagatccag
     2101 atccgcggcg tagtcgacgt cgacgccttc ccgctcctgc cagcgaacga actggagctc
     2161 ccagcgctgc tggtacccgg cgccttgatg cagctcgtac ggccggtcga agctcacctg
     2221 gaccgcccga cgtccgctcg agatctcggg cgaatcggcc atgctcgcgt cgtagaggtt
     2281 ggcgccgccc cacgtgttgt acgcctgcca cgtcaacgcg gcgctcacga acaggaccgg
     2341 cgccgggtcg cccggcgggc gcttgacgat gaacgggacg tacccgggat tcccggtggc
     2401 cggtcggagg acggccacgt acatgccgct cggccagtcg ttcgggacgg ggagctggag
     2461 cgacggctgc cagggtgcct cgctccggcc cgtggacggg tccaccagcg gaccctgccc
     2521 ggggttcgcg ggaatcgccg ggtcgacgtg gagcaggcgt ccgcccgcgc cgccgtacca
     2581 gcccagccgg taccactcga cgccgaacga cgcctgggcg tccacgcgga ggccgagccg
     2641 gtctccggga gccgcggagg cgtggtcgag atagccctgg atggtcgaga ggtcgcctcc
     2701 gatcagccag cggtcggtcc cgcgcaacgc gttctcgcgg ctgacgacgt tgacgtgggc
     2761 gggcgccgcg acggccgggc cggatctcac gccgaccacg cccggtgcgg ttgcccgcgg
     2821 gttgccgacc gcggccacgg tccggggcgg gatggcggcg cccggcgaca gggcgcgcgc
     2881 caccgccaga ccgagcacgc ccgcggacgc cgcgagaccg gctcgccccg tggcgatgag
     2941 gaacgcacgg cggtccacga cgatcttcct cccgacccga gacccgggtg tgacggtggg
     3001 gcctcggggc taggcgtccc tgacgggcgc gcggcccggc tcgcccacgg cgtcggttgg
     3061 gccggagctt gacgacggcc gcccggcggt ctcggccggg gctgctccgg ggtcgtcgag
     3121 catggcgcgg cggaactccc gaagcgcctt gccgagcgcc tcaccggtct ccgggagctt
     3181 gcccggaccc aggaccagca acgccacgac gaggatgacg atcaggtgcg tcggcgacag
     3241 tgcgcccatg cgaactcctt caaggttggt cggacgtcga tccgcgtcgc gtgacggtcc
     3301 gccgacgcgc ccatcacgcg gccctgatgg tcacgatggt ggcgagcggc cggtccgtct
     3361 ctccacccac gaggtacccg acgccgtcga cgacgacacc ggccgcgtcc gattccgcgc
     3421 ggggcaggcg accggcgacc cggacggcga gcgaggtcgg gtcgacctcc agcacgctgt
     3481 cgagggcccg gcccgcatgc cgtccgccga cgacgaccac gaccccaccc accagcagcg
     3541 cggtcgcgtg cgagatggat tcgggcagcc gcccgaccac ggccgcaatt ccgcgtacga
     3601 ggtcgacgga ctggatgacc gccgtgtcgc cggcggccga tgccccgccg atgacgagca
     3661 cccgcgagcc gacgacggcg accgcggcgt agcggaccgg gaccggcagg cgcgccgcga
     3721 ccgtgaaccg ggagccgtcc gtcgtgacga ggacgcgcgc gtccgcccgg cccgccgccc
     3781 cgccaccaac gacgacgacc cgcgatcctg ccccgaccgc cgcgagatcc gcgcgcggcg
     3841 acgggagccg gccctggacg gcagccggtc catcgaccgc gacccgctgg acccaggcat
     3901 cctgggtgct cgctcccccg ccgaggacga gcatcgagcc gtgcagcagg gcgcccccgg
     3961 cgtcgtggac cgggtgcgcc aggcggccca cgacggaggc cgcgccaccg ccgaagggaa
     4021 cgcggatcac ccggccggtc gtcccgcccg gcgtgagccc gcccacgacc aggagaccgg
     4081 aggccgtcgc gaacgcgacc gcgcgggtcg tgggcgtcgg gaggcgtagg gagctggttc
     4141 ggatcacgag cgagacggag ccggcgtcga gggcctcgat cggaccggca tccggcgcgc
     4201 cagctccaac cggcgc
//
LOCUS       DATDDI010000885         2902 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_227154, whole genome shotgun sequence.
ACCESSION   DATDDI010000885 DATDDI010000000
VERSION     DATDDI010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227154"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VIU37_12915"
     CDS             <1..944
                     /locus_tag="VIU37_12915"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY6014909.1"
                     /translation="VARHRGRLIVDGPGGPEPEQGSNVPVTATRRRPPPARISPEALA
                     AERGGAVEGLAWLGRTPESSATFLYRCVRLFARLVMFVVFRFRVETGGQGNLPKGGYL
                     LVAAAHRGWMDPFVVLHAIPATPRAWFLGSGPSTFTSRSRERLVHRLGGLLPVWRGGV
                     GIDQHVASARAVIGNGGILVQMPEGTVSGPVGRIGPFRVGWAVIALRTDAPIVPVAIA
                     GTEELYLGRRMESRILPATTARALAGLEPGAPLPDPGSRQELDLARRMSDGLAAILGP
                     AVEALHPLTVDPPERPRRLRNRLTWLLLRPGRLDRDG"
     gene            980..2401
                     /locus_tag="VIU37_12920"
     CDS             980..2401
                     /locus_tag="VIU37_12920"
                     /EC_number="4.2.1.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR01137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004122 - cystathionine beta-synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019344 - cysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-synthase"
                     /protein_id="HEY6014910.1"
                     /translation="MQYAETILDLVGRTPLVRIHRLTRDLGPADRQPLLLAKLEMLNP
                     GGSVKDRIGLPMIEAAERAGLLQPGGTIIEPTSGNTGHGLAIAAALKGYRCIFVMADK
                     QSSEKQQLLRAYGAEVVLCPTNVAPESPESYYSVAARLARDIPGAFKPDQYWNQENPD
                     AHERTTGPEIWDQTEGRVTHLVASVGTGGTITGIARALKARNPRIQVIGADPEGSVLS
                     GDTARPYLTEGVGEDFLPGTYDPAVVDRWVRVSDRDAFAMARRVTREEGILAGGSCGT
                     AMVAARDVVRDLTQAGAGDDAVVVVVLPDTGRNYLSKVYNDEWMRANGLLATTGATTR
                     VSELLADRHHAQDLPPVVVARTTDRVGDAIAVLQTYGISQLPVSEDPDGDAVVGLVGS
                     ISEKGLLERAFRDPSVVGRTVGEIMDPPLPRVDASATLDDAFALLSGGAQALVAVRGD
                     RPAGVVTKLDVLEYLTHGPVRPV"
     gene            complement(2405..>2902)
                     /locus_tag="VIU37_12925"
     CDS             complement(2405..>2902)
                     /locus_tag="VIU37_12925"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HEY6014911.1"
                     /translation="FLVWGPLMVGGTFLAATGTIPGWVLLASVPYALIVTAVLFGKHI
                     DKIAADTRLGVRTLPVILGESRARMVGAWLMILFYPLTVLLVLVGLVGPWVLLVGLGI
                     PRLLSVLKVFDQPKPSGPPPGYPERGWPLWFVAYAFIHTRRAGGLFTLGLILNALLPI
                     RLPWL"
BASE COUNT          403 a         1054 c         1070 g          375 t
ORIGIN      
        1 ccgtcgcccg acatcgcggc cgcctgatcg tggacgggcc cggcggcccg gagccggagc
       61 agggcagcaa cgtccccgtg acggcaaccc gccgccgccc cccaccggcg cggatctccc
      121 cggaggcgct cgccgccgag cggggcggcg cggtcgaggg actggcctgg ctggggcgca
      181 cgccggagtc gtccgcgacc ttcctgtacc gctgcgtccg gctctttgcc cggctggtga
      241 tgttcgtcgt cttccggttc cgcgtcgaga cgggcgggca ggggaacctc ccgaagggcg
      301 ggtacctgct ggtggccgcg gcccatcgcg ggtggatgga cccgttcgtc gtgctgcacg
      361 cgatccccgc gacgccgagg gcctggttcc tcggcagcgg cccgtccacc ttcacctccc
      421 gctcgcgcga gcggctggtt catcggctcg gcgggctgct gccggtatgg cgcggcggcg
      481 tcgggatcga ccagcacgtg gcgtccgcgc gggcggtgat cggcaacggc gggatcctcg
      541 tccagatgcc cgaggggacc gtcagcgggc cggtcggccg gatcgggccg ttccgcgtcg
      601 gctgggcggt gatcgccctg cgcaccgacg cgccgatcgt gcccgtcgcc atcgccggca
      661 ccgaggagct ctacctgggc cggcggatgg aatcacggat ccttccggcg accacggccc
      721 gggccctggc cggcctcgag cccggcgcgc cgttgccgga tcccgggtcc cgccaggaac
      781 tggacctcgc ccggcggatg agcgacggcc tcgcggcgat cctcgggccg gcggtcgagg
      841 cgctccaccc gttgaccgtc gatccgccgg aacgtccgcg ccgcctgcgc aaccggctga
      901 cctggctgct cctgcgcccg ggccgcctcg accgcgacgg ctgactcgcg tcgccgggcg
      961 gggcgctatc ctcccccgga tgcagtacgc ggagacgatc ctcgatctcg tcggacggac
     1021 gccgctggtc cggatccacc ggctgacccg tgacctcggt cccgccgacc gtcagccgtt
     1081 gctcctggcc aagctcgaga tgctcaaccc gggcggctcg gtcaaggacc ggatcgggct
     1141 gccgatgatc gaggcggccg agcgcgccgg gctgctccag ccgggcggga cgatcatcga
     1201 gccgacctcg gggaacacgg ggcacggcct ggcgatcgcg gcggccctga agggctaccg
     1261 ctgcatcttc gtgatggccg acaagcagtc gtcggagaag cagcaactgc tgcgggccta
     1321 cggggccgag gtcgtgctct gcccgacgaa cgtcgccccc gagtcaccgg agagctacta
     1381 ctccgtcgcc gcccggctgg cgcgcgacat tcccggcgcc ttcaagcccg accagtactg
     1441 gaatcaggag aaccccgacg cccatgagcg gacgaccggg ccggagatct gggaccagac
     1501 cgagggccgg gtgacccacc tggtcgcgag cgtcggcacc gggggcacga tcaccggcat
     1561 cgcccgggcc ctcaaggcgc gcaacccgcg gatccaggtg atcggggcgg atccggaggg
     1621 gagcgtgctg tccggcgaca cggcccggcc gtacctgacg gagggcgtcg gcgaggattt
     1681 cctgccgggc acctacgatc ccgcggtcgt cgatcgctgg gtccgggtga gcgaccgcga
     1741 cgcgttcgcg atggcgcgcc gggtcacccg cgaggagggc atcctggccg gcggttcctg
     1801 tggcaccgcg atggtcgccg cgcgtgacgt cgtgcgcgac ctcacccagg ccggcgccgg
     1861 cgacgacgcg gtggtcgtgg tggtcctgcc ggacaccggg cgcaactacc tgtcgaaggt
     1921 ctacaacgac gaatggatgc gggccaacgg cctgctggcg acgaccggcg cgacgacccg
     1981 tgtctccgag ctgctggccg accggcacca cgcccaggac ctgccgccgg tggtcgtcgc
     2041 gcggacgacc gaccgggtcg gcgacgcgat cgccgtactc cagacgtacg ggatcagcca
     2101 gctccccgtc tcggaggatc ccgatggcga cgcggtggtt ggcctggtcg gctcgatcag
     2161 cgagaagggc ctgctcgagc gggcgttccg cgacccgtcg gtcgtggggc ggacggtcgg
     2221 cgagatcatg gacccgccgc tgccccgtgt ggacgcctcg gcgacgctcg acgacgcctt
     2281 tgccctcctg tcgggcgggg cccaggcctt ggtcgcggtc cggggcgacc gcccggccgg
     2341 cgtcgtcacc aagctcgacg tcctcgaata cctgacccac gggccggtgc gaccggtctg
     2401 agccctagag ccagggcagc cggatcggca gcagcgcgtt gaggatcagg ccgagggtga
     2461 acaggcctcc cgcgcggcgc gtgtggatga acgcgtaggc gacgaaccac agcggccaac
     2521 cgcgctccgg gtagccgggc ggcggcccgc tcggcttcgg ctgatcgaac accttgagca
     2581 ccgacagcag gcgcggaatc ccgagcccga ccaggaggac ccacggaccg acgagcccga
     2641 ccaggacgag cagcactgtc aacgggtaga acaggatcat cagccacgcc ccgaccatgc
     2701 gggcgcgcga ctcgccgagg atgaccggga gggtccggac cccgagcctg gtgtctgccg
     2761 cgatcttgtc gatgtgcttg ccgaacagga cggcggtgac gatcagcgcg tacggcaccg
     2821 aggcgagcag gacccagccg gggatcgtcc cggtcgccgc gaggaacgtg ccgccgacca
     2881 tcagcggccc ccagacgagg aa
//
LOCUS       DATDDI010000886         2303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_643517, whole genome shotgun sequence.
ACCESSION   DATDDI010000886 DATDDI010000000
VERSION     DATDDI010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643517"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..1619
                     /gene="hutH"
                     /locus_tag="VIU37_12930"
     CDS             24..1619
                     /gene="hutH"
                     /locus_tag="VIU37_12930"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HEY6014912.1"
                     /translation="MTHPRGAATSDPIVLTGADLTIADVEAVARGGRGAVLDPAARGR
                     MQESRDLIERLVAAGEVVYGVTTGFGALATRFIDPADAAQLQENLLMSHAAGVGAPLD
                     TEIVRAMLLLRANTLALGHSGCRPLLVDRLLAFLEAGMHPVVPEQGSLGASGDLAPLA
                     HLALPLIGRGQVEFRGSVVPALVALRELGLEPLVLQAKEGIALLNGTQMMGAIGALLL
                     ADADRLARTASVAAAMSVEALLGTDVAFAAAYQLARPHPGQVAVAAELRHLLRDSDLQ
                     RRHHGLAHKVQDPYSLRCVPQVHGAVRDALDHLRRVLDIELNSATDNPLVFPGGGGVD
                     PEALATGGGLVISGGNFHGEPIALALDFAKLALSELGSISERRTALLVDARLNGGLPA
                     FLGASSGVDSGMMIYQYTAAALASENKVLAHPASADSIPTSANQEDHVSMGSVAARHA
                     RSVLEHVERILAIELLVAAQALDLRLARPEGRGASPGAGVAEALARVRARVRHLDGDR
                     EPGPDIAEATAMVHDGVLADLAG"
     gene            complement(1633..2124)
                     /locus_tag="VIU37_12935"
     CDS             complement(1633..2124)
                     /locus_tag="VIU37_12935"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY6014913.1"
                     /translation="MAEPITRNAYAILGVTPDSDDAAIAAAYRLLARRFHPDLAGEAA
                     TERMIRVNAAFERLRTPERRAEYDRELERNGGVPMPLRPEPDGTAAAGPPPGRPSGSV
                     LGFGRHLGWSIGEIARADPGYLVWLEERREGRPYLDEIDRTLRAIGYRVDRERPRPGT
                     RRR"
BASE COUNT          287 a          855 c          836 g          325 t
ORIGIN      
        1 cgtagccgac tatcctccat gtcgtgaccc acccgagagg cgcggcgacc tcagacccga
       61 tcgtcctgac cggcgccgac ctcacgatcg ccgacgtcga ggccgtcgcc cggggcgggc
      121 gcggggcggt cctcgatccc gcggctcggg gccggatgca ggaatcgcgc gatctcatcg
      181 agcggctcgt ggcggccggc gaggtcgtct acggggtgac gacagggttc ggggcccttg
      241 cgacccggtt catcgatccg gccgacgcgg cgcagctcca ggagaacctc ctgatgagcc
      301 acgccgcggg ggtcggggcg ccactcgaca ccgagatcgt ccgggcgatg ctcctcctcc
      361 gggcgaacac gctcgccctc ggccacagcg gctgccggcc gctgctcgtc gaccggctgc
      421 tggcgttcct cgaggccggc atgcacccgg tcgtaccgga gcaggggagc ctgggcgcgt
      481 cgggcgacct cgcgccgctc gcccatctcg cgctcccgct gatcggacgc ggccaggtcg
      541 agttccgggg ctcggtcgtg ccggccctcg tcgcgctccg tgagctcggg ctcgaaccgc
      601 tcgtgctcca ggcgaaggaa ggcatcgcgc tgctcaacgg tacccagatg atgggcgcga
      661 ttggggcgct gctgctcgcc gatgccgatc gattggcgag gaccgcgagt gtcgcggccg
      721 cgatgagcgt tgaggccctc ctcgggacgg acgttgcgtt cgcggcggcg taccagctcg
      781 cgcgcccgca ccccggccag gtcgcagtgg ccgccgagtt gcgccacctc ctgcgcgaca
      841 gcgacctcca gcggcgccac cacgggctcg cccacaaggt ccaggatccc tactcgctcc
      901 gctgcgtgcc gcaggtccat ggcgccgtcc gtgacgccct cgaccacctc cgccgcgtcc
      961 tcgacatcga gctcaacagc gcgacggaca acccgctcgt cttccccggt ggcggcggcg
     1021 tggatcccga ggcgctcgcc accggcggcg gcctggtgat cagcggcggg aacttccatg
     1081 gcgagccgat cgcgctcgcg ctcgacttcg ccaagctcgc gctctcggag ctcggatcga
     1141 tcagcgaacg gcggaccgcc ctcctggtcg atgcccggct caacggtggg ctgccggcgt
     1201 ttctgggtgc ctcgtccggc gtcgattcgg ggatgatgat ctaccagtac acggcggcgg
     1261 ctctcgcatc cgagaacaag gtcctggcgc atccggcgtc ggccgattcg atcccgacca
     1321 gcgccaacca ggaggaccac gtctcgatgg gttccgtggc ggcgcgccac gcccggtcgg
     1381 tcctcgagca cgtggagcgg atcctggcca tcgagctcct cgtcgccgcg caggcgctcg
     1441 acctgcggct ggcacgcccc gagggccggg gggcctcgcc cggcgccggc gtggccgagg
     1501 ccctggcgcg ggtccgggca cgggtccgcc atctcgacgg ggaccgcgag cccgggccgg
     1561 acatcgcgga ggcgacggcg atggtccacg acggggtgct ggccgacctc gccgggtagc
     1621 ggccgcggcg gcctagcggc ggcgcgttcc agggcggggc cgttcgcggt ccacgcggta
     1681 cccgatcgct cgcagcgtgc ggtcgatctc atcgaggtac ggccgaccct cgcgacgctc
     1741 ctcgagccag acgaggtacc cgggatcggc ccgagcgatc tcgccgatcg accagcccag
     1801 gtgccgcccg aacccgagca cggacccgga cggccggccc ggcggcggtc cggcggcggc
     1861 ggtgccgtcc ggttcgggac gcagcggcat cggcacgccc ccgttgcgct cgagctcgcg
     1921 gtcgtactcg gcccgccgct cgggcgtgcg cagccgctcg aacgcggcgt tgacccggat
     1981 catccgctcg gtggcggcct cgcccgcaag gtcggggtga aagcggcggg cgaggagccg
     2041 ataggcggcc gcgatcgcgg cgtcgtcgct gtcgggagtc acgccgagga tcgcgtacgc
     2101 gttgcgtgtg atcggctcgg ccatcgtcct cctccccagc ggccgggcaa ccataccaac
     2161 gtcgccgggc tgccgcgtcg tcgcgcgagc cgtagactcc cgcactgatg gacgcgatcc
     2221 gagtggtgga tgtcgtggac gcggtgagct tcggcctcat ccccccgtgc gcggatctgg
     2281 ggttcgacca ccggacctgc gac
//
LOCUS       DATDDI010000887         2123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_248130, whole genome shotgun sequence.
ACCESSION   DATDDI010000887 DATDDI010000000
VERSION     DATDDI010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248130"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VIU37_12940"
     CDS             complement(<1..516)
                     /locus_tag="VIU37_12940"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6014914.1"
                     /translation="MDEQENHFDEPVAGAYDEQANEMFRPEVVDPAVDFLAALAGDGR
                     ALELGVGTGRIALPLAARGIPVHGIDLSEAMLVRLRAKPGGDGIGLTVGDFSTARVDG
                     RFRLAYLVFNTIMNLTTQEAQVACFRNVADHLEPGGSFVIETGVPDLRRLPPGERYVI
                     FDFGDAHWGIDE"
     gene            602..1534
                     /locus_tag="VIU37_12945"
     CDS             602..1534
                     /locus_tag="VIU37_12945"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014915.1"
                     /translation="MAFPDGYRLRPPTEADLDGAAAVLIADQLDDVGTVVLDADFLRN
                     RWRRPGFDLARDAWVVTDPTGTVVAFGQATHDAPGVVESLGIVHPAHRGRGIGSALLD
                     RIESRATMLLAGESATRFRHSINANDRAAATMLEARGLRPVRHFWHMEIDLAEPLQPG
                     PVPAGVEIAGIDSPNDLPEVHAVLEEAFSEHWGNYPEPYDQWVDEEASGPGYDPALWL
                     RATGGGRMLGALTGNLWGERGWVGYLGVRAAGRGRGIGAALLRESFARFAARGARYAV
                     LNVDAENTTGATELYERVGMRVVNRWDLWERSGR"
     gene            complement(1541..>2123)
                     /locus_tag="VIU37_12950"
     CDS             complement(1541..>2123)
                     /locus_tag="VIU37_12950"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6014916.1"
                     /translation="GHPPMRTLALTILTFNVTYGAAWSVLVLYAGDRLGMNEVGFGLL
                     TTAIAVGGLIGISLYGRLERRFSLADIMRVGLLIETCTHLVLALTTSPVVALGMLVVF
                     GAHAFVWGTTSTVVRQRAVPDELLGRVGGVYRVAIVGGMVVGTPLGGLLAKAYGITAP
                     FWFAFAGSALLVTILWRQFDHIEHAGAAPPGSA"
BASE COUNT          314 a          751 c          771 g          287 t
ORIGIN      
        1 ctcgtcgatc ccccagtggg catcgccgaa gtcgaagatc acgtatcgct cgcccggggg
       61 aagccgccgg aggtcgggca cgcccgtctc gatgacgaag ctgccgccag gttcgaggtg
      121 gtcagcgacg ttccggaagc aggcgacctg ggcctcctgc gtcgtcaggt tcatgatcgt
      181 gttgaagacg aggtaggcga gacggaagcg cccgtccacc ctggccgtcg agaaatcgcc
      241 gaccgttagc ccgatgccgt cgccgcccgg cttggcgcgg agcctgacga gcatggcctc
      301 ggacaggtcg atgccatgga ccgggatgcc gcgagccgcc agcgggaggg cgatccggcc
      361 ggtcccgacc ccgagctcca gcgcccgccc gtcgccggcc agcgccgcca ggaagtccac
      421 ggcgggatcc acgacctcgg gccggaacat ctcgttcgcc tgctcgtcgt aggcgccggc
      481 caccggttcg tcgaagtggt tctcctgctc gtccatccgt ggaatcctgc cgcgccgggc
      541 caaatcgcgc cgggtgagcc gggccggcca tgtcgccttg gcgcttcgat agactccgcc
      601 gatggcattc cccgacggct accggctccg gccgcccacc gaggccgacc tcgacggtgc
      661 ggccgccgtc ctcatcgccg accagctcga cgacgtcggc acggtcgtgc tcgacgcgga
      721 cttcctgcgg aaccgctggc gccgcccggg cttcgacctg gccagggacg cgtgggtggt
      781 cacggacccg accgggacgg tcgtcgcgtt cgggcaagcc acccatgacg ccccgggtgt
      841 cgtcgaatcg ctcgggatcg tccacccggc gcaccgcggg cgcgggatcg gttcggcgtt
      901 gctcgaccgg atcgagtcgc gagcgacgat gctgctggcc ggagaatccg cgactcgctt
      961 ccggcattcg atcaacgcga acgatcgagc ggccgcgacg atgctcgagg cgcgcggcct
     1021 ccgacccgtc cgtcatttct ggcacatgga gatcgatctc gctgagccgt tgcagcccgg
     1081 gccggtgccg gccggggtcg agatcgccgg gatcgactcg ccgaacgacc ttccggaggt
     1141 gcacgccgtg ctcgaggagg cgttctccga gcattggggc aactacccgg agccgtacga
     1201 ccagtgggtc gacgaggaag ccagcggccc gggctacgac ccggcgctct ggctccgcgc
     1261 cacgggcggc ggccggatgc tcggcgcgct gacgggcaac ctgtggggcg agcgcggctg
     1321 ggtcggctac cttggcgtgc gggcggcggg ccggggccgc ggcatcggcg cggcgctgct
     1381 ccgcgaatcg ttcgcccggt ttgccgctcg cggggcgcga tacgcggtgc tgaacgtgga
     1441 cgccgagaac acgaccggag cgaccgagct gtacgagcgc gtggggatgc gcgtggtcaa
     1501 tcgctgggac ctctgggagc gctcggggcg gtagcccgcg tcaggcgctg cccggcgggg
     1561 ccgcgcccgc gtgctcgatg tggtcgaact ggcgccacag gatcgtgacg agcagcgccg
     1621 atccggcgaa ggcgaaccag aacggcgcgg tgatcccgta cgccttcgcc agcaggccgc
     1681 cgagcggcgt cccgacgacc atcccgccga cgatcgcgac gcggtagacg cccccgacgc
     1741 gcccgaggag ctcgtccggg acggcgcgct ggcgcaccac ggtcgaggtc gtgccccaga
     1801 cgaaggcgtg cgccccgaag acgaccagca tgcccagggc cacgaccggc gaggtcgtca
     1861 gggccagcac caggtgggtg cacgtttcga tcaggagccc gacccgcatg atgtccgcca
     1921 gcgagaagcg ccgttccagg cgaccgtaca ggctgatccc gatcaggccg ccgaccgcga
     1981 tcgcggttgt caggagcccg aacccgacct cgttcatccc gagccggtcg ccggcgtaca
     2041 ggacgagcac ggaccacgcc gcgccatacg tgacgttgaa ggtcaggatg gtcagggcca
     2101 gcgtccgcat cggcggatgg ccg
//
LOCUS       DATDDI010000888         1794 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_19235, whole genome shotgun sequence.
ACCESSION   DATDDI010000888 DATDDI010000000
VERSION     DATDDI010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19235"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..472)
                     /locus_tag="VIU37_12955"
     CDS             complement(<1..472)
                     /locus_tag="VIU37_12955"
                     /inference="COORDINATES: protein motif:HMM:NF017072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014917.1"
                     /translation="MKIGVARETAPGERRVALVPEALGKLQAAGIDILVERGAGLGAL
                     IPDSAYTDAGATVVSTDELYGQADVIARVQKPSPAEAKQLRSGQAVVGLLQPLLDPAL
                     MAELAKAGVSAISLDAIPRTLSRAQTMDALSSQANVGGYKAVLIGANAFGRYFPL"
     gene            complement(566..1360)
                     /locus_tag="VIU37_12960"
     CDS             complement(566..1360)
                     /locus_tag="VIU37_12960"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEY6014918.1"
                     /translation="MSVPASSSPDSAAAVRSLPRLADLARLLRAAIRAPAYEPAATDL
                     REVRVAGVALPARATVVLFVATAALVLDATKRGVLPAVGGLLGDGDPVLNLALERAIL
                     FGALPLLVVTLGFRDRPARFGLTLGDWRWGAGLLLIGLVVMTPIIAWFSGFQDFVAYY
                     GTVEGSIGQIALRNAIEVIPAEFLFRGFLMFVLLRRIGPLAIVVVQVPFVMAHIGKPE
                     IELWSTFIGGSVFAWLDWRTGSVVWSALGHLYVLTLMVVLARGLLG"
     gene            complement(1391..>1794)
                     /locus_tag="VIU37_12965"
     CDS             complement(1391..>1794)
                     /locus_tag="VIU37_12965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014919.1"
                     /translation="GWDDAQAYLASLKNSGGHGYMLPGFWIALTGAGLAVIGGAVAVY
                     RVRREVRFRVHVSRATGVSVLGGVIGAVVGIGAAVVLGEDFGTNPTVTGSAVTFLSIV
                     LGIVGAWLGSRIGRAFGGVDEGDGFDRDRGA"
BASE COUNT          292 a          655 c          651 g          196 t
ORIGIN      
        1 ggagcgggaa gtagcgcccg aaggcgttcg cgccgatgag gaccgccttg tagccgccga
       61 cgttcgcctg cgacgacagg gcgtccatcg tctgggcccg cgacagggtc cgcgggatcg
      121 cgtcgagcga gatcgcgctg acgccggcct tcgccagctc cgccatgagg gccggatcga
      181 ggagcggctg gagcagcccg acgacggcct ggccggagcg gagctgcttc gcctcggccg
      241 gtgacggctt ctggacccgg gcgatgacgt cggcctggcc gtacagctcg tcggtcgaga
      301 cgaccgtcgc gccggcgtcc gtgtaggccg agtccgggat gagcgcgccg agcccggcgc
      361 cacgctcgac gaggatgtcg atgccggccg cctggagctt gccaagcgcc tccggcacca
      421 gggccacgcg ccgttcgccg ggcgcggtct ccctggccac tccgatcttc atgtgggcat
      481 cacctggtgg ctggatgcga aggaggaagc gtcggcgcga ggagtcgcgc tgcgccgatc
      541 gcagtctatc cggtccggcc ctgcgctagc cgagcagccc ccgggcgagg acgaccatca
      601 gcgtcagcac gtagaggtgg ccgagggcgc tccacacgac cgagccggtg cgccagtcga
      661 gccaggcgaa gaccgagccg ccgatgaacg tcgaccacag ctcgatctcg ggcttgccga
      721 tgtgggccat gacgaacggc acctggacga cgacgatcgc cagcgggccg atccgccgca
      781 gcagcacgaa catcaggaag ccccggaaca ggaactccgc cgggatgacc tcgatggcgt
      841 tgcggagcgc gatctggccg atcgacccct cgaccgtgcc gtagtacgcg acgaagtcct
      901 ggaagcccga gaaccaggcg atgatcgggg tcatcacgac cagcccgatc aggagcagcc
      961 ccgcgcccca gcgccagtcg ccgagggtca ggccgaatcg cgccggacgg tcacggaacc
     1021 cgagggtcac cacgagcagc ggcagcgccc cgaacaggat cgcccgctcg agggcgagat
     1081 tcagcacggg atcgccgtcg cccagcagcc cgccgaccgc cggcaggacg ccccgcttcg
     1141 tggcgtcgag caccagggcc gccgtcgcga cgaagaggac cacggtagcg cgcgccggca
     1201 gcgccacgcc ggcgacgcgg acctcgcgca ggtcggtcgc ggccggctcg taggcggggg
     1261 cgcggatggc agccctgagg agtctcgcga gatcggccag gcggggcagc gatcgaaccg
     1321 cggcggccga gtccggcgag ctcgaggccg ggacgctcac gaggcggcga cgctcacgac
     1381 gaggtgggcc tcacgcgccg cggtcgcggt cgaagccgtc gccctcgtcg acgccgccga
     1441 acgcccgccc gatccgcgac ccgagccagg ccccgacgat cccgaggacg atcgagagga
     1501 acgtgacggc gctcccggtc acggtgggat tcgtgccgaa gtcctcgccc agcacgaccg
     1561 ccgcgccgat gccgacgacc gccccgatca ccccgccgag cacggacacg ccggtcgcgc
     1621 ggctcacgtg gacccggaac cggacctccc ggcggacccg gtagaccgcc accgccccgc
     1681 cgatgacagc gaggccggcg ccggtcaggg cgatccagaa gcccggcagc atgtagccgt
     1741 gcccgccgct gttcttcagg ctggcgaggt acgcctgggc atcgtcccag ccga
//
LOCUS       DATDDI010000889         2104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_414629, whole genome shotgun sequence.
ACCESSION   DATDDI010000889 DATDDI010000000
VERSION     DATDDI010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414629"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2104)
                     /locus_tag="VIU37_12970"
     CDS             complement(<1..>2104)
                     /locus_tag="VIU37_12970"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY6014920.1"
                     /translation="EKIIGDAIVAVFGLPVRHDDDALRAVEAAAESQRALALLNDQLD
                     ERWGVRLVVRTGVATGDVIFGEASIGQHVLTGDTMKISSAMEQNAPPLEVLIAESTYD
                     LVRDAVEVEAVEPVTPKGTSEAVAAYRLVSVRARPQAGHAAADTAAAGLRLCPACGEE
                     NPEAFRHCGMCGAVLASAAAARESRKTVTLVFADPKPMTVDGRPPSAEALRDVMTRYF
                     EQMRVPLERHGGTVEKFIGDAVMAVFGLPVRHEDDAVRAVRAAADMQAALPALNEHSR
                     AAWGLELRNHIGVNTGEVIAGDASLGQRLVTGDAVNTAARLEQAAGAMEIILGDLTYR
                     LARDQIEVEPIPPLTLKGKAEPVPAYRLVSVRGPQAERASLTTPFVGRRDELDRLEMT
                     LLEVEATRSCQLVTIVGDAGVGKSRLVREFATRASSREKSQVLRGRCLPYGDGVTFWP
                     IAEIVRSAAGISDEDPREVALEKMAAIARRATGNTEDPGPIIERVAAAIGLTTTQFAG
                     PELFWGIRKLLEAIASRRPLVAIVDDIHVAAPTFLELLDHLLDAVHGSPILLLATARR
                     ELLETRPEWAEGHEDESVVLEPLSADESDAIVGELLGGLEVPVRQRIVSAAEGNPLYV
                     EQITAMLVETGAIRREGKAWVATGSHEIQIPPTVQALVAARLDALRNEERQVIDPASV
                     IGLGFAVDAVVSLVPEDLA"
BASE COUNT          265 a          766 c          767 g          306 t
ORIGIN      
        1 gcgaggtcct ccgggacgag gctgacgacg gcgtcgacgg cgaagccgag gccgatcacg
       61 gacgccgggt cgatgacctg gcgctcctcg ttccggagcg cgtcgagccg ggcggcgacc
      121 agcgcctgga cggtcggcgg gatctggatc tcgtgggagc cggtggcgac ccaggccttg
      181 ccctcccgcc ggatcgcgcc ggtttcgacg agcatcgcgg tgatctgctc gacgtacagc
      241 gggttcccct ccgcggcgct cacgatccgc tgccggacgg ggacctccag gccgcccagc
      301 agttcgccga cgatcgcgtc ggattcgtcg gcggacagcg gctcgaggac caccgattcg
      361 tcctcgtggc cctcggccca ctccgggcgc gtctcgagca gctcgcgccg cgcggtcgcg
      421 agcagcagga tcggcgagcc gtggacggcg tcgagcaggt ggtcgagcag ctcgaggaag
      481 gtcggcgccg cgacgtggat gtcgtcgacg atcgcgacca gcggccgccg gctggcgatc
      541 gcctcgagga gcttgcggat cccccagaac agctccggac cggcgaactg ggtcgtggtc
      601 aggccgatcg ccgcggccac ccgctcgatg atcggtccgg gatcctccgt gttccccgtc
      661 gcccgccgcg cgatggcggc catcttctcg agcgccacct cgcgcgggtc ctcgtcgctg
      721 atcccggccg cgctccggac gatctcggcg atcggccaga aggtgacgcc gtcgccgtag
      781 ggaaggcatc ggccgcgcag gacctggctc ttctcccgtg acgaggcacg ggtcgcgaac
      841 tcgcgcacca gtcgcgactt gccgacgccg gcgtcgccga cgatcgtgac cagctggcag
      901 gatcgcgtcg cctcgacttc gagcaacgtc atctcgagcc ggtccagctc gtcccggcgg
      961 ccgacgaacg gcgtggtcag cgaggcgcgc tcggcctggg gtccgcggac gctgaccagc
     1021 cggtaggccg gcacgggttc cgccttgccc ttgagcgtga gcggcgggat cggctcgacc
     1081 tcgatctggt cgcgagccag gcgataggtc aggtcgccga ggatgatctc catcgcgccg
     1141 gcggcctgtt ccagccgggc ggcggtgttg accgcgtccc cggtcaccag ccgctggccg
     1201 aggctcgcgt cgccggcgat cacctcgccg gtgttgaccc cgatgtggtt gcgaagctcg
     1261 aggccccagg ccgcccggga gtgctcgttg agggcgggca gcgccgcctg catgtcggcc
     1321 gccgcccgga cggcccgcac ggcgtcgtcc tcgtgccgga cggggagtcc gaacaccgcc
     1381 atgaccgcgt cgccgatgaa cttctcgacc gtgccaccgt gccgctcgag cggcacgcgc
     1441 atctgttcga agtagcgggt catgacgtcg cgcagcgcct cggcgctggg gggccggccg
     1501 tcgacggtca tcggcttcgg gtcggcgaac acgagcgtga ccgtcttgcg gctctcgcgg
     1561 gcggctgcgg ccgaggccag cacggcgccg cacatcccgc agtggcggaa cgcctccggg
     1621 ttctcctcgc cgcacgccgg gcagaggcgc agcccggcgg ccgcggtgtc ggccgcggcg
     1681 tggccggcct gcggccgggc ccggacggac acgagccggt atgccgccac cgcctcgctc
     1741 gtgcccttcg gcgtcaccgg ctcgacggcc tcgacctcga ccgcgtcccg gacgaggtca
     1801 tacgtcgact cggcgatgag cacctcgagc ggcggcgcgt tctgctccat cgccgacgag
     1861 atcttcatgg tgtcgccggt caggacgtgc tggccgatgc tcgcctcgcc gaagatcacg
     1921 tccccggtcg cgaccccggt ccggacgacc agtcgcacgc cccatcgctc gtcgagctgg
     1981 tcgttgagga gggccagggc tcgctggctc tccgccgccg cctcgacggc tcggagcgca
     2041 tcgtcatcgt ggcggacggg gaggccgaag acggcgacga tggcgtcgcc gatgatcttc
     2101 tcga
//
LOCUS       DATDDI010000890         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_706073, whole genome shotgun sequence.
ACCESSION   DATDDI010000890 DATDDI010000000
VERSION     DATDDI010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706073"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VIU37_12975"
     CDS             <1..264
                     /locus_tag="VIU37_12975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014921.1"
                     /translation="RRGEGCPMTDTPFGRFMGEMREGWRRIEAAEPNDVYGTDDEVDV
                     DEPIPYVPTGMADVPDDLVAEVLHFLAWEREYGLWEREQRRYR"
     gene            350..496
                     /locus_tag="VIU37_12980"
     CDS             350..496
                     /locus_tag="VIU37_12980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014922.1"
                     /translation="MSAELMRGFDRAQAEYDAQVPLEDPDEWNDDWCELCGDQAVCPE
                     CVGA"
     gene            496..>1559
                     /locus_tag="VIU37_12985"
     CDS             496..>1559
                     /locus_tag="VIU37_12985"
                     /inference="COORDINATES: protein motif:HMM:TIGR03033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HEY6014923.1"
                     /translation="MTAAQDVVQLLDREWMPLSPWKCPAGMLVCSATVDRDVWLEQRQ
                     TGIGASEVAALFGVSPWQSPWEVWALKTGRLQPPPENEAMMRGRILEDGVADLWVATL
                     PKDKPVRLRRQGLMRHRAHSWMLATVDRLSVCQEGRCVVEIKTGTDLSDWDGDETPVA
                     YQLQTQQQLAVTGRDHAHLVVLGPRFQLLERTIPRDDELIADMVEHLGGWWQRHVVED
                     LEPDATARAADALARLYGNPDPDAVIDLPTDLVDAPDRIRKLTDEAKALEAQADELRA
                     RIKQAAGNASIIRALGQTVATWKPSKRIAGVNAAWRKANPDLVAAYSREVAETVLDVD
                     RLVEEHPHLIGDGAPLYRVRT"
BASE COUNT          258 a          561 c          533 g          207 t
ORIGIN      
        1 cgccgtgggg agggctgccc gatgaccgac accccgtttg gccggttcat gggcgagatg
       61 cgtgagggct ggcgccggat cgaggccgcc gagcccaacg acgtctacgg caccgacgac
      121 gaggtcgacg tcgacgagcc gatcccctac gtccctaccg gcatggccga cgtcccagac
      181 gacctcgtcg ccgaggtcct gcacttcctc gcctgggagc gcgagtacgg gctctgggag
      241 cgcgaacaga ggcgataccg atgagccgcg tgggccagca ccgcgaccgc cggtgcccag
      301 tgaaggactg cccggtgtgc gagcgcatcg ccgaagatcg ggccggccga tgagcgccga
      361 attgatgcgc ggattcgacc gcgcccaggc cgagtacgac gcgcaggtgc cgctcgagga
      421 cccggacgag tggaacgacg actggtgcga gctttgcggc gaccaagcgg tctgcccgga
      481 atgcgtgggt gcgtgatgac cgccgcgcag gatgtcgtgc aactgctcga ccgcgagtgg
      541 atgcctctgt cgccgtggaa atgcccggcc ggcatgttgg tgtgctccgc caccgtcgac
      601 cgtgacgtgt ggcttgagca gcggcagacc ggcataggcg cgtccgaggt cgccgccctg
      661 ttcggcgtgt cgccgtggca gtcgccgtgg gaggtgtggg cgctcaagac cgggcgcctg
      721 cagccgccgc cggaaaacga ggccatgatg cgcggccgaa tcctcgagga cggcgtcgcc
      781 gacctgtggg tcgccaccct gcccaaggac aagccggtgc ggctacgccg gcagggtctc
      841 atgcggcacc gcgcccactc gtggatgctc gccaccgtcg accggctctc agtctgccaa
      901 gagggccgct gtgtcgtcga aatcaagacc ggcaccgacc tgtccgactg ggacggcgac
      961 gagacgcccg tcgcgtacca gctgcagaca cagcaacagc tcgccgtcac cggccgcgac
     1021 catgcgcacc tcgtcgtcct gggtccacgg ttccaactgc tcgagcgcac catcccgcgc
     1081 gacgacgaac tgatcgccga tatggtcgag caccttggcg gctggtggca gcggcacgtc
     1141 gtcgaggacc tcgagcccga cgcgaccgcc cgtgccgccg acgccctcgc gcggctgtac
     1201 ggcaacccgg acccagacgc cgtcatcgac ctgccgacgg atcttgtcga cgcgcccgac
     1261 cgtatccgca agctgaccga cgaggccaag gcgctcgagg cgcaggccga cgaactgcgc
     1321 gcccgcatca aacaggccgc cggtaacgcg tcgatcatcc gcgcgctcgg ccagaccgtc
     1381 gccacatgga aaccgtccaa gcggatcgcc ggcgtcaacg cggcgtggcg caaggccaac
     1441 ccggacctcg tcgccgcgta ctcccgcgag gtcgccgaga ccgtgctcga cgtcgaccgg
     1501 ctcgtcgagg aacaccccca cctgatcggc gacggcgccc cgctctaccg agtccgcac
//
LOCUS       DATDDI010000891         3860 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_60862, whole genome shotgun sequence.
ACCESSION   DATDDI010000891 DATDDI010000000
VERSION     DATDDI010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60862"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..430)
                     /locus_tag="VIU37_12990"
     CDS             complement(32..430)
                     /locus_tag="VIU37_12990"
                     /inference="COORDINATES: protein motif:HMM:NF024093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6014924.1"
                     /translation="MTGNARLALLILAVGDLPRAGAFYRAAFGWPADVDLPVYVEFRL
                     PAGMRLGLYAREAFGRNVGELPHGAPAGSIVTTELYLYPDDLAASAAALVAAGARPLS
                     PLAHRDWGDEVAYFADPDGNVIALARATTA"
     gene            complement(477..1427)
                     /locus_tag="VIU37_12995"
     CDS             complement(477..1427)
                     /locus_tag="VIU37_12995"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014925.1"
                     /translation="MLTLDHVSKIYKVGTFGGTDLAAVKDVSFNVDAGQVVSLIGESG
                     SGKTTIGRMILRLTQATRGTITFDGQDVAKLPRRGYYRLVQGVFQDPFSSYNPIFKAD
                     HVFGMIRSVYFRGMPNAEWDARVEAALEAVGLDPDQVLHKYPHQLSGGQLQRLLIARA
                     LLLDIRMLVADEIISMLDASTRIDVLNLLGDLKARGLGILFITHDLSLGYYSSQRTLI
                     LLRGQIVEMGATEKVYGNPTHPYTKMLIGSVPLLHKKWRQVEQELETSAVPVADECTY
                     HALHPEFRGDGARAAARPALVEVEEDHFVGCIRPYLKGTC"
     gene            complement(1432..2382)
                     /locus_tag="VIU37_13000"
     CDS             complement(1432..2382)
                     /locus_tag="VIU37_13000"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014926.1"
                     /translation="MSLQVNDLRVYYRTLAGDVRALDGVTFSIAEGEIMGLAGESGCG
                     KSTLGKALTHFDSRMRYVGGDVVLDDEPLPIMDSDAMDEFRFWSVSIIPQYAMSAMNP
                     TRKIGKMIADLLESRGEDAAAMRPEIERRIELVGLQRDVLDRYPIELSGGMKQRVVMV
                     IATLLNPSLLIADEITSALDVSTQKAVAETLIEFRDRQLVRSMIVITHDMSILAQVAD
                     TITVMYAGKLAEKAATDVIIGAPKHPYTRLLISSLPEVGVRYADKRLTGIPGNPPQLL
                     DPPVGCRFQARCPLADAQCREEPPFVEVEPAHFVACWKVS"
     gene            complement(2387..3289)
                     /locus_tag="VIU37_13005"
     CDS             complement(2387..3289)
                     /locus_tag="VIU37_13005"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014927.1"
                     /translation="MTAAASTPDGATGPGVAPVRPRREMLYFALRDKRILFGAAVVLF
                     FLILSIVGPVLDPTDPTAFDGPTGAPPSAEFWFGTTTFGEDVFAQFVNGLQATFLVGL
                     LGGGLAALVGISIGFVAGYRGGIVDEFLSMITNIVLVIPTLVVLVVIAAFLSARGVVV
                     EAAFVGLTSWPWAARAIRSQTFSLRAREFVDLANMSGLPTWKVIFREIAPNMGSYLFM
                     TFILLFGGAVLIAATLDFIGLGPTEGISLGLMMNNAVLWSALQLGMWWWFIPPGLGIT
                     AIVGALYVMNVGLDEIFNPKLREM"
     gene            complement(3346..>3860)
                     /locus_tag="VIU37_13010"
     CDS             complement(3346..>3860)
                     /locus_tag="VIU37_13010"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6014928.1"
                     /translation="GSVLRVLPLSGAFNYSMSPTLTWEFFLSAYTHWLLPFLSLFLVQ
                     FGGWAIGMRNMIIYELESDYAHWLEALGAPQSLVRRYAFRNAVLPQVTGLALSLGVVV
                     AGALVTEVVFSYPGLGYLVLQAIQNEDYFLLQGIFLFVIIGVLVANFLIDIAYVVVDP
                     RTRVGMQGRA"
BASE COUNT          651 a         1275 c         1376 g          558 t
ORIGIN      
        1 cgccggcgca ttccccgcag acccgggccg gtcaggcggt cgtggctcgc gccagggcga
       61 tgacgttgcc gtcggggtcg gcgaagtagg cgacctcgtc accccagtcg cggtgggcga
      121 gcgggctcag cggtcgcgcg ccggcggcga cgagcgcggc ggcgctggcg gccaggtcgt
      181 ccgggtagag atacaactcg gtcgtcacga tcgatccggc cggggccccg tgcggcagct
      241 cgccgacgtt ccgcccgaac gcctcgcgcg cgtacaggcc cagtcgcatg cccgccggca
      301 ggcggaactc cacgtacacc ggcaggtcga cgtcggccgg ccagccgaac gcggcccggt
      361 agaaggctcc ggcccgcggc aggtcgccga ccgcgaggat caggagcgcg aggcgagcgt
      421 tgcccgtcat cgggtgacgg ccggcgacgg cggcggcgct gcggggcgaa cccggttcag
      481 caggtgccct tcaggtaggg gcggatgcat ccgacgaaat gatcctcctc gacctcaacg
      541 agcgcgggcc gtgctgcggc cctcgcaccg tcgccgcgga actccgggtg cagggcgtgg
      601 tacgtgcact cgtcggcgac cggcaccgcg ctggtctcga gctcctgctc gacctggcgc
      661 cacttcttgt gcagcagcgg caccgagccg atgagcatct tcgtgtacgg atgggtcggg
      721 ttgccgtaga ccttctcggt cgcacccatc tcgacgatct ggccgcggag caggatcagg
      781 gttcgctggc tgctgtagta gcccagcgac aggtcgtggg tgatgaacag gatcccgaga
      841 ccgcgtgcct tgagatcgcc gagcaggttg agcacgtcga tccgggtgga ggcgtcgagc
      901 atgctgatga tctcgtcggc cacgagcatc cggatgtcga gcagcagcgc ccgggcgatc
      961 agcaggcgct ggagctggcc gccgctcaac tggtgcgggt acttgtggag cacctggtcg
     1021 ggatcgagcc cgaccgcctc gagggccgcc tcgacgcggg cgtcccattc ggcgttgggc
     1081 atgccccgga agtagacgct gcggatcatg ccgaagacgt ggtcggcctt gaagatcggg
     1141 ttgtacgagc tgaacggatc ctggaacacg ccctggacga gccggtagta gccgcggcgt
     1201 gggagcttgg cgacgtcctg cccgtcgaag gtgatcgtgc ctcgcgtggc ctgggtcagc
     1261 cgcaggatca tccggccgat cgtcgtcttg ccgctgccgc tctcgccgat cagcgagaca
     1321 acctggccgg cgtcgacgtt gaagctcacg tccttgacgg ccgccaggtc ggtgccgccg
     1381 aacgtgccga ccttgtagat cttggagacg tggtcgaggg tcagcacggc gtcacgacac
     1441 cttccagcag gcgacgaaat gggcgggctc gacctcgacg aacggcggct cctcgcggca
     1501 ctgcgcgtcg gccagcgggc agcgggcctg gaaccggcag cccaccggcg gatcgaggag
     1561 ctgcggcggg ttgcccggga tcccggtcag gcgcttgtcg gcgtagcgca cgcccacctc
     1621 ggggagcgac gagatgagga ggcgcgtgta cgggtgcttc ggcgcgccga tgatcacgtc
     1681 ggtggcggcc ttctcggcca gcttgccggc gtacatcacg gtgatcgtgt cggccacctg
     1741 ggccaggatc gacatgtcgt gggtgatcac gatcatcgac cgcacgagct ggcgatcacg
     1801 gaactcgatg agcgtctcgg cgaccgcctt ctgggtggac acgtcgagcg ccgaggtgat
     1861 ctcgtcggcg atcagcaggc tcggattgag gagcgtcgcg atgaccatca cgacgcgctg
     1921 cttcatcccg ccggacagct cgatcggata ccggtccagc acgtcgcgct gcaggccgac
     1981 gagctcgatc cgccgctcga tctcgggccg catcgcggcc gcgtcctcgc cccgcgactc
     2041 gagcaggtcg gcgatcatct tgccgatctt gcgggtcggg ttcatcgcgc tcatggcgta
     2101 ctgcgggatg atcgacacgc tccagaaccg gaactcgtcc atcgcgtccg agtccatgat
     2161 cgggagcggc tcgtcgtcga ggaccacgtc gccgccgacg tagcgcatcc ggctgtcgaa
     2221 gtgggtcagc gccttgccga gcgtcgactt gccgcagccg gactcgccgg ccaggcccat
     2281 gatttcgccc tcggcgatgg agaacgtgac gccgtcgagc gccctgacat cgccggccag
     2341 ggtccggtag tagacccgga ggtcgttgac ctgcaagctc accgcgtcac atctcccgaa
     2401 gcttggggtt gaagatctcg tcgaggccca cgttcatcac gtagagcgcc ccgacgatcg
     2461 cggtgatgcc cagccccggc gggatgaacc accaccacat ccccagctgg agcgcgctcc
     2521 agaggaccgc gttgttcatc atcagcccga gcgagatgcc ctcggtcggg cccagcccga
     2581 tgaagtcgag cgtggccgcg atcagcaccg cgccgccgaa cagcaggatg aacgtcatga
     2641 acaggtagga gcccatgttc ggcgcgatct cccggaagat gaccttccag gtcgggagcc
     2701 cgctcatgtt cgccaggtcg acgaactcgc gggcacgcag ggagaacgtc tgcgaccgga
     2761 tcgcgcgggc ggcccacggc caggaggtca atccgacgaa cgcggcctcc acgaccaccc
     2821 cgcgagcact gaggaaggca gcgatcacga cgagcacgac gagggtcggg atgaccagga
     2881 cgatgttggt gatcatgctg aggaactcgt ccacgatccc gccgcgatag ccggcgacga
     2941 agccgatcga gatgccgacc agggccgcca gccctccgcc gagcaggccg accaggaagg
     3001 tggcctgcag accgttgacg aactgggcga agacgtcctc gccgaaggtc gtggtcccga
     3061 accagaactc ggcgctgggg ggcgcgccgg tcggaccgtc gaaggccgtg ggatcggtcg
     3121 ggtcgaggac cgggcccacg atcgacagga tcaggaagaa caggacgacc gccgcgccga
     3181 acaggatccg cttgtcgcgg agcgcgaagt agagcatctc gcgccggggg cgcacgggtg
     3241 cgacaccggg tccggtcgca ccgtcgggcg tgctggcggc cgccgtcacg gctgcctccc
     3301 cgtggtcggc gggggtggga acgggtcgtt gcgtgctgat gctcatcacg cacgcccctg
     3361 catgccgacg cgcgtccgcg ggtcgacgac gacgtaggcg atgtcgatca ggaagttcgc
     3421 cacgagcacg ccgatgatca cgaacaggaa gatgccctgg agcaggaagt agtcctcgtt
     3481 ctggatggcc tggaggacga ggtagccgag gcccgggtac gagaacacca cctcggtcac
     3541 cagcgcgccg gcgacgacca cgcccagcga cagcgcgagc cccgtcacct ggggcaggac
     3601 cgcgttgcgg aacgcgtagc gcctgacgag gctctggggg gcaccgagcg cctccagcca
     3661 gtgcgcgtag tccgactcga gctcgtagat gatcatgttg cgcatgccga tcgcccaccc
     3721 accgaactgg accaggaaga gcgacaggaa cggcagcagc cagtgggtgt acgcgctcag
     3781 gaagaactcc caggtgagcg tgggcgacat cgagtagttg aaggctcccg acaacgggag
     3841 cacccgcagg accgacccga
//
LOCUS       DATDDI010000892         2599 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_414648, whole genome shotgun sequence.
ACCESSION   DATDDI010000892 DATDDI010000000
VERSION     DATDDI010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414648"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VIU37_13015"
     CDS             <1..446
                     /locus_tag="VIU37_13015"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY6014929.1"
                     /translation="LAAREAFRVLLEQGSGGSIVFVGSKNALVAGANAAAYSSAKAAS
                     LHLARCLAEEGGPHGIRVNTVNPDAVIQGSSIWSSDWKAERASTYGVSEDELQTFYKG
                     RTKLGVAVLPEDVAEAIAFFAGPRSAKSTGNVVNVDGGVTAAYPR"
     gene            509..1525
                     /gene="rhaS"
                     /locus_tag="VIU37_13020"
     CDS             509..1525
                     /gene="rhaS"
                     /locus_tag="VIU37_13020"
                     /inference="COORDINATES: protein motif:HMM:TIGR02637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015153 - rhamnose transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0033296 - rhamnose binding [Evidence IEA];
                     GO_process: GO:0015762 - rhamnose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnose ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY6014930.1"
                     /translation="MHMRRWAVVAAAMLVAGGAVTAALAAPSHSTKGKTYYFIPKDTL
                     NPYEVIADHGGKLALTELGDTQVVSSGTEDTAAAQQPAIQAAIQGHAAGIVIAGNDPE
                     AVCPALKQAQAQGTKVVAFDSDVNCRQLFINQADTETIGRSQIQLLAKMMHFKGQFAI
                     LSAASTATNQNAWIKYMKLELKKPAYKNMKLVKIYYGNDNPAQSRQATVSMLQAYPNL
                     KGIESPTTVGISSAAQYLSTSKYKKKVVLTGLGLPSQMKKYVHDGTVTAFALWNPENL
                     GYLAGYAVSALAEGTITGKVGETFKAGKLGTYKILKGPDGRPQVILGPPFVFNIKNVD
                     KFKF"
     gene            1530..>2599
                     /locus_tag="VIU37_13025"
     CDS             1530..>2599
                     /locus_tag="VIU37_13025"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEY6014931.1"
                     /translation="MTERHVNPLPGDGGAAAGGVPILVLEHAQKSFGAVHALEDGDIE
                     LVAGEVHGLVGENGAGKSTLVKILAGVHRPEAGRLVLDGEEAIFDNAKQSQAAGIAII
                     FQEPTLFPDLSVAENIFVGVQPLKRFRRIDGRRMRREAAAVFEQLGVRIDPDRPARGL
                     SIADQQLVEIAKALTTNARVIVMDEPTAALTATEVERLFGIVETLRARGNAVLFVSHR
                     LEEIFALCQRVTVMRDGRHVLTKPIAELTIQSVIRAMVGRDMDALFPKVPSEPGRVVL
                     KVDRLTREGVFTDVSFAVRSGEIVALAGLVGAGRTEVARAIFGIDRWDTGSVEVDDRR
                     LPPGSPTAAMAAGVGLVPEDRR"
BASE COUNT          450 a          908 c          878 g          363 t
ORIGIN      
        1 tcctcgccgc ccgcgaggcg ttccgcgtgc tgctcgaaca gggaagcggc ggctcgatcg
       61 tcttcgtcgg ctcgaagaac gcgctcgtgg cgggcgccaa cgcggccgcc tactcctcgg
      121 cgaaggccgc gtcgctgcac ctcgcgcgct gcctggcgga ggagggaggg ccgcacggca
      181 tccgcgtgaa caccgtcaac cccgatgccg tgatccaggg ctcgagcatc tggtcgtccg
      241 actggaaggc cgagcgcgcg agcacctacg gcgtcagcga ggacgagttg cagaccttct
      301 acaagggccg cacgaagctc ggcgtggccg tgcttcccga ggatgtcgcc gaggcgatcg
      361 cgttcttcgc gggcccacgg tccgccaagt cgaccggaaa tgtcgtcaac gtcgacggcg
      421 gcgtcactgc cgcatacccc cggtgaggcg aaggaggcgc cccatccacc ggtccgttgg
      481 ttccacaccc tcgcgaaagg atcaccggat gcacatgcgc agatgggcgg tcgtcgccgc
      541 cgcgatgctc gtggcgggtg gcgccgtcac ggccgcgctc gcggccccga gccactcgac
      601 gaagggcaag acgtactact tcatcccaaa ggacacgctc aatccgtacg aggtgatcgc
      661 cgaccacggc ggcaagctcg cactcaccga gctcggcgac acgcaggtcg tctcctcggg
      721 tacggaggac accgccgcgg cgcagcagcc cgcgatccag gccgcgatcc agggtcatgc
      781 cgccggcatc gtcatcgccg gcaacgaccc ggaggccgtc tgcccggcgc tcaagcaggc
      841 ccaggcgcag gggacgaagg tcgtcgcctt cgactcggac gtgaactgcc gccagctgtt
      901 catcaaccag gcggacaccg agacgatcgg gcggagccag atccagctgc tggccaagat
      961 gatgcacttc aagggccagt tcgcgattct gtcggcggcc tcgacggcca cgaaccagaa
     1021 cgcctggatc aagtacatga agctcgagct gaagaagccg gcctacaaga acatgaagct
     1081 cgtgaagatc tactacggca acgacaaccc ggcccagtcg cggcaggcga cggtaagcat
     1141 gctgcaggcc tacccgaacc tgaaggggat cgagtcgccg acgacggtcg gcatctcctc
     1201 ggcggcgcag tacctctcca cctcgaagta caagaagaag gtcgtgctga cgggcctcgg
     1261 cctgccgagc cagatgaaga agtacgtcca cgacggcacg gtgacggcgt tcgcgctctg
     1321 gaaccccgag aacctcgggt acctcgcggg ctacgcggtc tccgcgctcg ccgaaggcac
     1381 gatcacgggc aaggtcggcg agacgttcaa ggccggcaag ctcggcacgt acaagatcct
     1441 caagggcccc gacgggcggc cgcaggtgat ccttggaccg ccgttcgtct tcaacatcaa
     1501 gaacgtcgac aagttcaagt tctaggggat tgacggaaag gcacgtcaat ccgctgccag
     1561 gggatggggg cgccgccgcc ggcggcgtcc ccatcctcgt cctcgagcac gcgcagaaga
     1621 gcttcggcgc cgtccacgcc ctcgaggacg gcgacatcga gctggtcgcg ggcgaggtgc
     1681 acggcctcgt cggcgagaac ggtgccggga agtcgacgct cgtcaagatc ctcgccggcg
     1741 tccaccggcc cgaagccggc cggctcgtcc tcgacggcga ggaggcgatc ttcgacaacg
     1801 cgaagcagtc gcaggcggcc gggatcgcga tcatcttcca ggagccgacg ctcttccccg
     1861 acctgagcgt cgccgagaac atcttcgtcg gcgtgcagcc gctcaagcgc ttccgccgca
     1921 tcgacggcag gcggatgcgc cgcgaggcgg ccgccgtctt cgagcagctc ggcgtccgga
     1981 tcgatcccga ccggcccgcg cgcggcctct cgatcgccga ccagcagctg gtcgagatcg
     2041 caaaggcgtt gaccacgaac gcgcgcgtga tcgtcatgga cgagccgacc gccgccctga
     2101 ctgcgaccga ggtcgagcga ctgttcggca tcgtcgagac gctgcgggcg cgcgggaacg
     2161 cggtgttgtt cgtctcgcac cgcctcgagg agatcttcgc gctctgccag cgcgtcaccg
     2221 tgatgcgcga cggccgccac gtgctgacca agccgatcgc cgagctgacg atccagtccg
     2281 tgatccgcgc gatggtcggt cgggacatgg acgcgctctt cccgaaggtc ccctccgagc
     2341 caggccgggt cgtcctgaag gtcgaccggc tgacccgcga gggcgtcttc accgacgtct
     2401 cgttcgccgt gcggagcggc gagatcgtcg cactcgcagg cctcgtcggc gccggccgga
     2461 ccgaggtcgc ccgcgcgatc ttcggcatcg accgctggga cacaggctcg gtcgaggtcg
     2521 acgaccggcg gctgccgccg ggatccccga ccgcggcgat ggccgccggc gtcgggctcg
     2581 ttcccgagga ccggcgcca
//
LOCUS       DATDDI010000893         3679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_144216, whole genome shotgun sequence.
ACCESSION   DATDDI010000893 DATDDI010000000
VERSION     DATDDI010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3679
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144216"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VIU37_13030"
     CDS             complement(<1..193)
                     /locus_tag="VIU37_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011188253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014932.1"
                     /translation="MSAEEPLQPIVEPASPPVPAAGEPPTDGADETPRIGVYVCHCGT
                     NIAGTVDVAAVRDWAAERLG"
     gene            complement(190..1200)
                     /locus_tag="VIU37_13035"
     CDS             complement(190..1200)
                     /locus_tag="VIU37_13035"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEY6014933.1"
                     /translation="MKHYLYYPGCSLTGSARAYAESLGAIMATLDIGLHEIDDWNCCG
                     ATEYLTLSPLRGYALIGRNLALAERQSDGSNTLVAPCSACYANLAKTDNLVRVNPELS
                     AQLNRALAADGMQYTPGSIAVRHLLEVLIDDVGLAEIERHVVRPLHGLRVASYLGCLT
                     SRPDYDRRWSHREQPVALDRLMAALGAEIVDFPLRTSCCGGHMTQIGPHTGFELIRRL
                     VDAADRREADLMVTVCPMCQMNVDAYQGEMNHYFRTSYHVPILFFTQLIGLAFGLEPK
                     ALGIGSEVVSASQALGRIGIEVPVPEETAAAPTAGAGARPGRRPPRPQGLPMPRLEED
                     DR"
     gene            complement(1197..1805)
                     /locus_tag="VIU37_13040"
     CDS             complement(1197..1805)
                     /locus_tag="VIU37_13040"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY6014934.1"
                     /translation="MAAATRGPSRGAAFSYRFLDEINAATAGDSRLELCIQCGTCGGS
                     CPSAADMDRTPRSLFAMARAGFRYEVLHSNTPWMCVSCYFCAVRCPQEIRIPDVMYAI
                     KSIATREGVAPERTGADFSRTFVDNIHHYGRSYEVGLVARHYLRHYPLRLPGIAPMGI
                     DMVAKGRMGFVPPHRIRGLDGLRAILNRAGEIEAERRRAVPA"
     gene            complement(1831..2235)
                     /locus_tag="VIU37_13045"
     CDS             complement(1831..2235)
                     /locus_tag="VIU37_13045"
                     /inference="COORDINATES: protein motif:HMM:NF013962.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY6014935.1"
                     /translation="MERQFVVQLDNRPGELAHLARALGARGVNITHISCAGTGSIACA
                     FMTTAEDEVTRSVLRGLGHEFLEGATIVVDVMDQPGGLADVAERFAKAGVNILGTLCV
                     GRREGVLEMAFAVDDEAKARAALVPAELAGVG"
     gene            complement(2436..2810)
                     /locus_tag="VIU37_13050"
     CDS             complement(2436..2810)
                     /locus_tag="VIU37_13050"
                     /inference="COORDINATES: protein motif:HMM:NF016854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HEY6014936.1"
                     /translation="MPGFAKSPPELVDRFHAVTDDLPGVQHRLMFGYPALFVAGNLAS
                     GLYESSWFVRLGDADRDELLAIDGAGPVEIMPGRSMAGYAALPPSMVAGDEPALRSWL
                     DRAVAFAQTLPPKVARPRRGSR"
     gene            2867..>3679
                     /locus_tag="VIU37_13055"
     CDS             2867..>3679
                     /locus_tag="VIU37_13055"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6014937.1"
                     /translation="MRIGIVLPIAEEDGVDGTPDYPLIRAMAVGAEAAGLDSVWVFDH
                     LLFRFDGVTTGIHECWTLLAAVAEATRRVELGTLVMCTGFRNAALLAKMAATLDHVSA
                     GRLILGIGAGWHDPEYEAFGYPTDHRVGRFEESLAVITDLIRTGRSDRAGRFVTARDA
                     VLRPPARPDIPILVAAKRPRMLELTARHADAWNLAWFGRPDERLARVRGELLDACARV
                     RRDPATLSMTVGVTVRYPTEGPPPAEPPTAPALAGTAAEIADGLAAHAAAGAD"
BASE COUNT          527 a         1336 c         1295 g          521 t
ORIGIN      
        1 gcccgagccg ctcggcggcc cagtcgcgga cggcggcgac gtcgacggtg cccgcgatgt
       61 tggtcccgca atggcagacg tagacgccga tccgtggcgt ctcgtcggcg ccatcggtcg
      121 gcggctcccc tgccgccggg acgggcggcg acgcgggctc gacgatcggc tggagcggct
      181 cttctgcgct caccggtcgt cctcctcgag gcggggcatc ggcaggccct gcggtcgcgg
      241 cggccgtcgg cccggccgcg cgccggctcc ggccgtcggc gccgccgccg tctcctccgg
      301 gaccggcacc tcgatcccga tccggccgag cgcctggctt gcggacacga cctcgctgcc
      361 gatcccgagc gccttgggct cgaggccgaa cgccagcccg atgagctgcg tgaagaacag
      421 gatcggcacg tggtagctcg tgcggaagta gtggttcatc tcgccctggt aggcgtcgac
      481 gttcatctgg cacatcggac agaccgtgac catgaggtcg gcctcgcggc ggtcggccgc
      541 gtcgaccagc cggcggatca gctcgaaccc ggtgtgcggt ccgatctggg tcatgtggcc
      601 cccgcagcag ctcgtccgca acgggaagtc gacgatctcc gccccgagcg cggccatcag
      661 ccgatcgagt gcgaccggct gctcccggtg cgaccagcgc cggtcgtaat cgggccgcga
      721 ggtcaggcaa ccaaggtacg aggccacgcg aaggccgtgg agcggacgca cgacgtgccg
      781 ttcgatctcg gccagcccga cgtcgtcgat gaggacctcg agcaggtggc gcaccgcgat
      841 ggagcccggc gtgtactgca tgccgtctgc ggcgagcgcc cggttgagct gcgcgctgag
      901 ctcggggttc acccgaacca ggttgtcggt cttggccagg ttggcgtagc aggcgctaca
      961 tggagccacg agcgtgttag acccgtcgct ctggcgctcg gccagggcga ggttgcgccc
     1021 gatgagcgcg tagccccgaa gcgggctcaa cgtcaggtac tcggtcgcgc cgcagcagtt
     1081 ccagtcgtcg atctcatgca gcccgatgtc gagggtcgcc atgatcgcgc cgagtgattc
     1141 ggcataggcc cgggcactgc cggtgagcga gcaacccggg tagtagaggt agtgcttcat
     1201 gccggcaccg cgcggcgtcg ctcggcctcg atctcgcccg cccggttgag gatcgcccgc
     1261 aggccgtcga ggccgcggat ccggtggggc ggcacgaagc ccatccggcc cttggccacc
     1321 atgtcgatcc ccatcggcgc gatgcccggc agccgcagcg ggtagtggcg caggtagtgg
     1381 cgggcgacca gcccgacctc gtaactccgg ccgtaatggt ggatgttgtc gacgaacgtc
     1441 cgcgagaaat cggcgccggt ccgctcgggc gcgacgccct cacgggtcgc gatcgacttg
     1501 atcgcgtaca tcacgtcggg gatgcggatc tcctgcggac agcgaaccgc gcagaagtag
     1561 caggacacgc acatccaggg cgtgttgctg tggaggacct cgtagcggaa cccggccctg
     1621 gccatcgcga acaggcttcg cggtgtgcgg tccatgtcgg ccgcggatgg gcacgagccg
     1681 ccacaggtcc cgcactggat gcacagctcg agccgcgaat caccggccgt ggcggcgttg
     1741 atctcgtcga ggaaccgata gctgaaagcg gcgccccgcg atgggccccg cgtcgcggca
     1801 gccatcgacg gcactccttc ccgatcgcgg tcagcccacg ccggccagct ccgcagggac
     1861 gagcgccgcc ctcgcctttg cctcgtcatc gacggcgaac gccatctcga gcacgccttc
     1921 gcgccggccg acgcacaggg ttcccaggat gttcacgccg gccttggcga agcgctcggc
     1981 gacgtcggcc agcccgcccg gctgatccat gacgtcgacg acgatcgtcg cgccctcgag
     2041 gaactcgtgc ccgagcccgc ggaggaccga gcgcgtcacc tcgtcctcag ccgtggtcat
     2101 gaaggcacag gcaatcgacc cggttccggc gcacgagatg tgggtgatgt tgacgccgcg
     2161 tgcccccagg gcacgggcaa gatgcgctag ctcgccgggg cgattgtcga gctggaccac
     2221 gaactggcgt tccattcggg cctcctgcat cgcagcgtcc cgacatcccc tgcggacccg
     2281 ggacgcgact tccgcgaccg accgaaccca atggctcagc gtggcggcgg actcccggcg
     2341 ggcgccagtg ccacaccgcc catttccgga tcgccattca gcccgtcggg ttacgccgat
     2401 cacggccgat caggcagcgg gcaccgaacc ccggatcacc tcgagccccg gcgcggcctc
     2461 gcgaccttcg gtgggagcgt ctgcgcgaac gccacggctc ggtccagcca cgatcgcagg
     2521 gccggttcgt cgccggcgac catcgacggc gggagggccg cgtacccggc catcgaccgc
     2581 ccgggcatga tctcgacggg tcccgcaccg tcgatcgcga gcagttcgtc tcgatcggca
     2641 tcgccgaggc gcacgaacca gctcgactcg tacaggccac tcgccaggtt gccggccacg
     2701 aacagcgccg ggtagccgaa catcaggcgg tgctgtacgc cgggcaggtc gtcggtcacg
     2761 gcatggaacc ggtcgaccag ctcgggcggc gatttggcga aaccgggcat tcggccacct
     2821 ccaccgcgaa cgatacgcct gcccgtccgt cgcctaccct gtccgcatgc gcatcgggat
     2881 cgtcctgccc atcgccgagg aagacggggt cgacggcacc cccgactatc cgctgatccg
     2941 ggcgatggcc gtcggcgcgg aagcggccgg gctcgattct gtctgggtct tcgaccacct
     3001 gctcttccgg ttcgacggcg tgacgaccgg gatccacgag tgctggacgc tcctggccgc
     3061 cgtggccgag gcgacccggc gcgtcgagct gggcaccctg gtcatgtgca ccgggttccg
     3121 gaacgcggcg ctgctggcca agatggccgc gacgctcgac cacgtgagcg ccggccggct
     3181 gatcctcggc atcggcgccg gctggcacga tcccgagtac gaggccttcg gctaccccac
     3241 cgaccaccgc gtcgggcggt tcgaggaatc gctggcggtc atcaccgacc tgatccggac
     3301 gggtcgatcc gaccgcgccg ggcggttcgt caccgcccgc gacgcggtgc tgcggccgcc
     3361 ggcgcgcccc gacatcccga tcctggtcgc ggccaagcgg ccccggatgc tcgagctgac
     3421 ggcccgccac gccgacgcgt ggaaccttgc ctggttcgga cggcccgacg agcggctggc
     3481 gcgggtccgc ggcgagctcc tcgacgcctg cgcgcgcgtc cgccgggatc ccgcgaccct
     3541 gtcgatgacg gtcggcgtga cggtccgcta cccgaccgaa ggtccgccgc cggcagagcc
     3601 gccgacggcg ccggcgctgg ccggcacggc cgcggagatc gcggacgggc tggccgccca
     3661 cgccgcggcc ggtgccgac
//
LOCUS       DATDDI010000894         1939 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_622528, whole genome shotgun sequence.
ACCESSION   DATDDI010000894 DATDDI010000000
VERSION     DATDDI010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622528"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1154
                     /locus_tag="VIU37_13060"
     CDS             <1..1154
                     /locus_tag="VIU37_13060"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEY6014938.1"
                     /translation="GKHVPAHDRRAAAERAVGARRPSGPSADPRQRILGAFPRTIELE
                     GAPPMINVLILLAGAIILGVSLAIGILLPLSRATPGRPGAPIPRAHVFRGIVGVIVGA
                     FILVAGLSAPFVEVPAGNVGVVTNFGSVQAGTLEPGLHIVIPIVQHVAIIDTRVQPHQ
                     FQEIDAASSEYQTVKLTGVMNYHVDGQFASDLYQRVGTDFASKVIDPAFNDFIKTVVP
                     EYKVDQILGARDEIRSKAKDALAANLSQYHIIVDDIYIANIAFSNEFQAAIEAKQVAQ
                     QQVQTEQQILAQKKIQADQAVAQAQGQADSNVKLAEGQAAATIALANGQAKANQTLAA
                     SLSDQILQYQYIQKLADKITVMLVPSGNASIFDLKGLLGQAAPSASPTP"
     gene            1225..1312
                     /locus_tag="VIU37_13065"
     tRNA            1225..1312
                     /locus_tag="VIU37_13065"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1259..1261,aa:Ser,seq:tga)
     gene            1678..>1939
                     /locus_tag="VIU37_13070"
     CDS             1678..>1939
                     /locus_tag="VIU37_13070"
                     /inference="COORDINATES: protein motif:HMM:NF016593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014939.1"
                     /translation="MTTADPISLAQTRRLAANADTILLRATRPADLETPIGAFLRLDD
                     GGPAYLLESVEGGERLGRYSFLGVGPRRLLDVRDGVARTQTRP"
BASE COUNT          334 a          701 c          632 g          272 t
ORIGIN      
        1 cgggcaagca cgttccggcc cacgatcggc gcgctgcggc ggagcgggcc gtcggcgcgc
       61 ggcggccgag cgggccgtcg gccgacccgc gccagcgtat cctcggagca ttcccacgga
      121 ccatcgaact cgagggggcc ccaccgatga tcaacgtgct catcctgctc gccggcgcca
      181 tcatcctcgg cgtcagcctt gcgatcggca tcctcctgcc gctcagccgg gccacgccgg
      241 gcaggccggg tgccccgatc ccgcgagccc acgtcttccg cggcatcgtc ggcgtcatcg
      301 tcggcgcgtt catcctcgtg gccgggctgt ctgccccgtt cgtcgaggtt ccggccggca
      361 acgtcggcgt ggtcaccaac ttcggatctg tccaggccgg cacgctggag cccgggctcc
      421 acatcgtgat cccgatcgtc cagcacgtcg cgatcatcga cacgcgcgtc cagccgcacc
      481 agttccagga gatcgacgcg gcctcgtccg aataccagac ggtcaagctg accggcgtca
      541 tgaactacca cgtggacggg cagttcgcgt ccgacctcta ccagcgcgtg ggcacggatt
      601 tcgcctcgaa ggtcatcgac cccgccttca acgacttcat caagaccgtc gtgcccgagt
      661 acaaggtcga ccagatcctg ggcgcccgcg acgagatccg ctcgaaggcg aaggacgccc
      721 tggccgccaa cctgtcccag taccacatca tcgtcgacga catctacatc gcgaacatcg
      781 cgttcagcaa cgagttccag gccgccatcg aggccaagca ggtcgcccag cagcaggtcc
      841 agaccgagca gcagatcctt gcccagaaga agatccaggc cgatcaggcc gtcgcgcagg
      901 cgcagggcca ggccgattcg aacgtcaagc tggccgaagg acaggccgcc gcgacgatcg
      961 cgctggcgaa cggccaggca aaggccaatc agacgctcgc tgcctccctg tcggaccaga
     1021 tcctgcagta ccagtacatc cagaagctgg ccgacaagat cacggtcatg ctggtcccgt
     1081 ccggcaacgc ttcgatcttc gatctcaagg gcctgctcgg ccaggctgcc ccgtcggcgt
     1141 cacccacgcc gtaggccggc gccggccggt ctcgccgcga ggccgttgag gtcgcgcgcc
     1201 gggccgcgct atcctgcgca cgctggagag gtggccgagc ggttgaaggc ggcgctcttg
     1261 aaaagcgttg agttgcaaga ctccgtgggt tcgaatccca ccctctccgc caaggcttga
     1321 cggcccgcac ggcctccgcc catactccgc ggaccatcac gaagaacggg ctgtgaacgg
     1381 gacgagtacc cgtcgcacgt cgacccagag atccggcggt tggtgcgagc cggagcgacg
     1441 acgacgggga atggacccgg gagcctccgg accgaacgcg aagcggtgcg agccgcaggc
     1501 gccagtaggc tccggcgcag agcgccagcg ataccgggca gcgccgatcg gcgaggggca
     1561 acccgaaccc gtcggtcagg agagtgcggc aacgccgaat gagggtggca ccgcggaagg
     1621 cacgaccttt cgtcccggag acgattggtc gttcttgatt ctccgaggcc accagcgatg
     1681 accacagccg atccgatcag cctggcgcag acccggcgcc tggcggcgaa cgccgacacg
     1741 atcctgctgc gagccacccg cccggcggac ctcgagaccc cgatcggcgc cttcctgcgc
     1801 ctcgacgacg gcgggcccgc ctatctcctc gagtccgtcg aaggtgggga gcgcctgggc
     1861 aggtattcct tcctcggcgt ggggccgcgg cggctgctcg acgtgcgtga cggcgtggca
     1921 cgcacccaga cgcgaccgg
//
LOCUS       DATDDI010000895         2666 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_373157, whole genome shotgun sequence.
ACCESSION   DATDDI010000895 DATDDI010000000
VERSION     DATDDI010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373157"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..999)
                     /locus_tag="VIU37_13075"
     CDS             complement(4..999)
                     /locus_tag="VIU37_13075"
                     /inference="COORDINATES: protein motif:HMM:NF009498.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose 1,6-diphosphate aldolase"
                     /protein_id="HEY6014940.1"
                     /translation="MESQPGASITFPPGTRRGLDACASARGTFAVLALDHRQNLRREL
                     HPDDPTRTTYDELVAFKRAVVRALAPSATGTLLDPEVGAAQTIADGSLPGRSGLLVAV
                     EATGFDGPPEARTSRILPGWSVEKAKRMGASAVKLLVYYHPQAANADAQERLVASVAA
                     ESVRLDIPLFVEPLGYDPATGGRLAGEARRRCVIETARRLTATGGTVLKAEFPYDAAT
                     TDEGAWADACRELDAASAVPWVVLSGGVDDATFERQVAVACRAGASGTVVGRSVWSPA
                     ATMEAPARDAWLAGVGRARLEAIVRLVDELGTPWHARPNPLQAAAAPAEGWYREY"
     gene            1083..1880
                     /locus_tag="VIU37_13080"
     CDS             1083..1880
                     /locus_tag="VIU37_13080"
                     /inference="COORDINATES: protein motif:HMM:NF012669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HEY6014941.1"
                     /translation="MCTIPLMLSTRRRAELIARLRVDGRASVDVLARDLGVTQSTIRR
                     DLRRLANDGALIRTYGGAAASAAGSGRRDTGDPRLAAKRAIAAAAADLVEDGQTIAIS
                     SGTTTLELAWRLVDRRLTVITNALDIAAALLDRPGIELVVLGGVVRPGMHSTLGHLAE
                     LALRELRADTLFMGIGAVSSEHGLMNDSIPEILTDRALRHAARSCVVLADASKLGTMA
                     PAFVFGLDLVDTLVTDAGADAGEVAAVEAQGVRVIRAPDAAPVEATA"
     gene            1889..>2666
                     /locus_tag="VIU37_13085"
     CDS             1889..>2666
                     /locus_tag="VIU37_13085"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY6014942.1"
                     /translation="MVPAEIAEEPAAIRTTLTESRDAARGVAEALRSRGVTRIHVIGN
                     GTSYHSSLAAATLYRRHAGAADPTVVALTAGEFHRYLPALGPTDAVIGISASGEFRDV
                     VAVVDALKGRVPTVAIVHVPGSTLDRTADYVVRSAGGPSRVPVMTKTFASTLVAAELV
                     LTELLGGERAERIRSGIARAADHAEAAIAVAEGRVPALADALVGARHLFVVGSGAAHP
                     AALEAALKLKEMAIVHAEGSESWEMASGVATIIDGESVVVA"
BASE COUNT          339 a         1015 c          957 g          355 t
ORIGIN      
        1 cgttcagtat tcccggtacc agccttccgc gggagccgcg gccgcctgca gcgggttcgg
       61 ccgggcgtgc cacggcgtac cgagctcgtc cacgagccgg acgatcgcct cgagccgggc
      121 gcggcccacg cccgcgagcc acgcgtcgcg tgccggcgcc tccatcgtcg ccgcggggga
      181 ccagacggat cgcccgacga cggtgcccga ggctcccgcc cggcaggcca cggcaacctg
      241 gcgctcgaac gtcgcgtcgt ccacgccgcc cgacagcacg acccagggca cggccgacgc
      301 cgcgtccagc tcccggcagg cgtcggccca ggcgccctcg tccgtggtcg cggcgtcgta
      361 cgggaactcg gccttgagga ccgtgccgcc ggtggcggtc agccggcgcg ccgtctcgat
      421 gacgcacctg cggcgggcct ccccggccag ccttccgccc gtcgccgggt cgtagcccag
      481 cggctcgacg aagagtggga tgtccagccg gacggattcg gctgcgacgc tcgcgacgag
      541 gcgttcctgc gcgtccgcat tcgcggcctg cggatggtag tagacgagga gcttgacggc
      601 cgaggctccc atccgtttgg ccttctcgac cgaccagccg ggcaggatcc gcgacgtccg
      661 tgcctccggt ggcccgtcga atccggtcgc ctccacggcg acgagcagcc cgctccgtcc
      721 cgggagcgac ccgtcggcga tcgtttgggc ggcaccgacc tcggggtcga gcagcgtccc
      781 ggtcgcgctt ggcgccaggg cccgcacgac ggctcgcttg aacgccacca gctcgtcgta
      841 cgtcgtccgg gtcgggtcgt ccgggtggag ctctcgccgg aggttctggc ggtggtccag
      901 cgccagcacg gcgaacgtcc cacgggcgga cgcgcaggca tcgagcccac gccgcgtgcc
      961 cggcgggaac gtgatcgagg ctcctggctg cgactccacg ggcggatcct agcgcgcgaa
     1021 ccgtgcggcg acaagcccat tctgcgcgat tcgcgcagcc gatcttgaca atgcacgcag
     1081 ggatgtgcac gatcccgctc atgttgagca cccgacgccg cgccgagctc atcgcccgcc
     1141 tgcgcgtcga cggccgcgcc agcgtcgacg tcctcgcgcg cgatctcggg gtcacccagt
     1201 ccacgatccg tcgggacctc cggcggctgg ccaacgacgg cgcgctgatc cggacgtacg
     1261 gtggcgcggc ggcctcggcg gccggcagcg gccggcgcga caccggcgat ccacgactcg
     1321 cggcgaagcg ggcgatcgcg gcggcggccg cggacctggt cgaggacggc cagaccatcg
     1381 ccatctcgag cggcacgacg accctcgagc tggcctggcg gctggtcgac cggcggctca
     1441 cggtgatcac gaacgcgctg gacatcgccg cggcactgct cgaccggccc ggcatcgagc
     1501 tcgtcgtcct cggtggcgtc gtccgaccgg gcatgcattc gacgctcggc cacctcgccg
     1561 agctcgcgct ccgcgagctg cgcgccgaca ccctgttcat ggggatcggg gcggtgagct
     1621 ccgagcacgg cctgatgaac gactcgatcc ccgagatcct gaccgaccgg gcgctccgtc
     1681 acgcggcgcg cagctgcgtg gtcctcgcgg acgcctccaa gctcggcacg atggccccgg
     1741 cgttcgtgtt cgggctcgac ctggtcgaca ccctggtcac cgacgcgggt gcggatgccg
     1801 gcgaggtcgc cgccgtcgag gcgcagggcg tccgggtcat ccgcgccccg gatgcggcgc
     1861 cggtcgaggc gaccgcgtga tggagggcat ggtcccggcg gagatcgccg aggagccggc
     1921 ggccatccgc acgaccctga cggagagccg cgacgcggcg cgcggcgtcg ccgaagcgct
     1981 ccgatcgcgg ggcgtcacgc gcatccacgt catcggcaac ggcacgtcgt accactcgtc
     2041 gctggctgcc gcgaccctct accgccggca tgccggcgcc gccgacccga cggtcgtggc
     2101 gctcaccgcg ggcgagttcc atcgctacct gcccgcgctc ggcccgacgg acgccgtcat
     2161 cgggatctcc gcgtccgggg agttccgcga cgtcgtcgcg gtcgtggacg ccctcaaggg
     2221 tcgtgtcccg acggtcgcga tcgttcatgt ccccggcagc acgcttgacc gcacggccga
     2281 ctacgtcgtg cgctcggccg gcggcccgag ccgcgtcccg gtcatgacca agaccttcgc
     2341 ctccacgctc gtcgccgccg agctcgtcct gacggagctg ctcggcggcg aacgcgcgga
     2401 gcggatccgc agcgggatcg ccagggccgc ggatcatgcg gaggccgcga tcgccgtcgc
     2461 cgaaggccgc gtcccggccc tcgccgacgc gctagtcggc gcccggcacc tcttcgtcgt
     2521 cgggagcggc gccgcccacc cggcggcgct cgaagccgcc ctcaagctca aggagatggc
     2581 gatcgtccac gcggaaggat ccgagtcctg ggagatggcc tcgggtgtcg cgacgatcat
     2641 cgacggcgag tcggtcgtcg tggcgc
//
LOCUS       DATDDI010000896         2302 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_19321, whole genome shotgun sequence.
ACCESSION   DATDDI010000896 DATDDI010000000
VERSION     DATDDI010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19321"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VIU37_13090"
     CDS             complement(<1..607)
                     /locus_tag="VIU37_13090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014943.1"
                     /translation="MSEILTESFCERCGTRYTFESARPKIRLKGVKVLSRGLKNFVLS
                     DDTTMDEAMAAARSETDRESTAHQLDAFHKTFNFCMSCRQYTCPNCWNEVEARCQSCA
                     PLPEPELAVTPEVVPPAFPGLATLTGSAPVAEPSSNGSNGHVAVSPEEPAAASSWPET
                     TPDATPAAPSRDGEPAPAVKASNQTAGLLSRFRPGQNLDDEL"
     gene            878..1690
                     /locus_tag="VIU37_13095"
     CDS             878..1690
                     /locus_tag="VIU37_13095"
                     /inference="COORDINATES: protein motif:HMM:NF023818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3662 and FHA domain-containing protein"
                     /protein_id="HEY6014944.1"
                     /translation="MPPLAAIERFFERLFERPSARLFRTRLQPIQLQRRIERAMEAER
                     RVTLERTLVPNRFIVHLHPADLAGFGDMTETLAVELADGALTFARTHHFSLADRPRVD
                     LQADAHVQRSDIRVEAQFADPPTERSAGSEHSTGEPGAAALARGPGDHVGGAIDPAPT
                     RVFKLPQPSSPRAAVAVTDPDGRIRRFSIGGGGLTIGRADDNDLVARDTRVSRHHGRI
                     AGRRGTLVYLDLGSTNGSRVNGEPVTEVVLGVGDRLEVGDTTIVVEGAGATD"
     gene            1690..2121
                     /locus_tag="VIU37_13100"
     CDS             1690..2121
                     /locus_tag="VIU37_13100"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY6014945.1"
                     /translation="MDGFTLVLWGFRLLFLLLLYLFLARVVRVLLRDLRAAAREPVQR
                     PGRLVVLESPAGEPAVGRSFGLDVITTLGRDVNNAIVVDDPFASAEHAVLTFRGRSWY
                     LEDLASTNGSFINGHPVSGVAALGYGDEVQIGQVRMRLERT"
     gene            2123..>2302
                     /locus_tag="VIU37_13105"
     CDS             2123..>2302
                     /locus_tag="VIU37_13105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014946.1"
                     /translation="MAARAPAAVAPPLPRVLGPIRPRARWQELRLLGLVGAALAIGSV
                     SLGATVTGRFGLYDPR"
BASE COUNT          293 a          839 c          829 g          341 t
ORIGIN      
        1 ccagctcatc gtcgaggttc tggcccggcc ggaatcgact cagcaagccg gccgtctggt
       61 tggaggcctt cacggccggt gccggctcgc cgtcccgaga cggtgcggct ggcgtcgcgt
      121 ccggcgtggt ctccggccac gacgaggccg ccgcgggctc ctcgggcgag acggcgacgt
      181 ggccgttcga gccattggac gagggttcgg cgaccggcgc cgacccggtc agcgtggcga
      241 ggccggggaa ggccggcggc accacctcgg gcgtcacggc gagctcgggc tcgggcagcg
      301 gcgcgcacga ctggcagcgc gcctcgacct cgttccagca gttcgggcag gtgtactgcc
      361 ggcacgacat gcagaagttg aaggtcttgt ggaaggcgtc gagctggtgc gccgtcgact
      421 cgcggtcggt ttcgctgcga gctgcggcca tcgcctcgtc catcgtcgtg tcgtcggaca
      481 ggacgaagtt cttcaggccg cgcgacagga ccttgacgcc cttgagccgg atcttcgggc
      541 gagcggattc gaacgtgtag cgcgtgccgc accgttcaca gaacgattcg gtcaggatct
      601 cggacatggg tccccgggta ccgcagagct ggcgtccgag cgtggaggcc gcccggccga
      661 ggcgagagta tagcgcaggg gtttcgccgc cccctgaacg tgggtacccg tccggccagc
      721 ggatggtcac acccggacgc ggcccgcgcc acggagcgat ttcgccgctc ggtgtcgcac
      781 aacgccggcg cggcacgcgc gagtcggcac cctggcgacc ccgccgcgct cagggcctgg
      841 cgcggcggag gccctctgct agactccggc accgatcatg ccgcccctgg ccgccatcga
      901 gcggttcttc gaacgcctct tcgaacgccc gtcggctcgg ctcttccgga cgcgtctcca
      961 gcccatccag ctgcagcgac ggatcgagcg cgccatggag gccgagcgcc gggtcacgct
     1021 cgagcggacg ctcgtcccga accggttcat cgtgcatctg caccccgccg acctggccgg
     1081 ctttggtgac atgaccgaaa cgctcgcggt ggagctggcc gacggggcgc tgaccttcgc
     1141 tcgaacccat catttctccc tggcggatcg cccgcgcgtc gaccttcaag cggacgcgca
     1201 cgtccagcgc tccgacattc gggtcgaggc gcagttcgcg gacccgccca ccgagcgctc
     1261 ggccgggtcc gagcactcaa ccggtgagcc cggcgccgcc gccctcgccc gggggccggg
     1321 cgaccacgtg ggcggcgcca tcgatccggc gcccacccgg gtcttcaagc tgccgcagcc
     1381 ctcgagcccg cgcgccgccg tcgccgtgac cgacccggac gggcggatcc gccggttctc
     1441 gatcggcggc ggcgggctga ccatcggtcg cgccgacgac aacgacctgg tcgcccgcga
     1501 cacccgagtc tcgcgccacc acggccggat cgccggtcgt cgcgggaccc tcgtctacct
     1561 ggacctgggc agcacgaacg gctcgcgcgt gaacggcgaa ccggtgaccg aggtcgtcct
     1621 cggggtgggg gaccggctgg aggtgggcga cacgacgatc gtcgtcgagg gagcaggggc
     1681 gaccgactga tggacggctt cacgctggtc ctgtggggct tccggctcct cttcctcctc
     1741 ctgctctacc tgttcctggc gagggtcgtc cgcgtcctgc tgcgtgacct gcgcgcggcc
     1801 gcccgcgagc ccgtccagcg gcccggccgg ctggtcgtgc tggaatctcc ggccggtgag
     1861 ccggcggtcg gccgatcgtt cgggctcgac gtcatcacca cgctcgggcg cgacgtcaac
     1921 aacgcgatcg tcgtcgacga cccgttcgcc tcggccgaac atgccgtgct gacgttccga
     1981 gggcggagct ggtacctgga ggacctcgcc agcaccaacg gctccttcat caacgggcat
     2041 ccggtcagcg gcgtggccgc gctcggttac ggcgacgagg tgcagatcgg ccaggttcgg
     2101 atgcgcctgg agcgaaccta gggtggccgc ccgagctccg gccgccgtgg cgccgccgct
     2161 gccgcgcgtc ctcggcccga tccggccgcg cgcccgctgg caggagcttc ggctgctggg
     2221 actggtcggc gccgcgctgg cgatcgggag cgtgtcgctc ggggcgaccg tcaccggccg
     2281 gttcgggctg tacgacccgc gc
//
LOCUS       DATDDI010000897         1520 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_39919, whole genome shotgun sequence.
ACCESSION   DATDDI010000897 DATDDI010000000
VERSION     DATDDI010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39919"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            273..1415
                     /locus_tag="VIU37_13110"
     CDS             273..1415
                     /locus_tag="VIU37_13110"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing sensor histidine kinase"
                     /protein_id="HEY6014947.1"
                     /translation="MKSEEALVALDRATRAIAAELDLERVLQQIVDSVRDLVGARYAA
                     LGIVHTDGRIEGFITSGISAAERALIGPPPEGHGLLGTIIRDGVSLRIPDIARHPDSY
                     GFPPHHPKMQSLLGVPVRIAGDPVGNLYLTEKLGAPEFSDEDQQLVEMFAVHAGIAIQ
                     NARLHQEVQKLAIVDERLRISRDLHDGIIQSIYAVSLSLEDVAELVDENPGEAVARVD
                     RSIDRLHTTIGDIRTFIVGLGPEVDDGLGGAIEAMAAELLAGTGIDLTLDLAAAEKVD
                     ARVHPEAAHELVQIAREALSNVARHSGARHASARLVVANEEAVLRIEDDGVGFDTERR
                     LGSGHFGLANLRDRAAGVGGTLTIDSGRDRGTRIIVRLPIAASESP"
BASE COUNT          227 a          541 c          556 g          196 t
ORIGIN      
        1 ggaggcgggc gacaggtcgg tggccagcag gatccgccga accgcggtcg aggctcggga
       61 accgggcacg ggtcggggtt gggtcagcac gatcccatgg ccccgccggc gggggccggc
      121 tcgaggacgc gcctggaccg agccgtattc gtcatgggcg gatggtggcg ggggcacgac
      181 ccacctcaca gtgacctccg gcacgaaatc ggcgggccat ctcaccccgc gaccgtgccg
      241 atcgggaccg cgccgctggt aggctccggt ccgtgaagtc cgaggaggcg cttgtcgccc
      301 tcgaccgcgc cacgcgggcg atcgccgccg agctcgacct cgagcgcgtg ctgcagcaga
      361 tcgtcgacag cgtccgcgac ctggtggggg cgcggtacgc cgcgctgggc atcgtccata
      421 ccgacggccg gatcgagggg ttcatcacga gcggcatctc ggccgccgag cgcgccctga
      481 tcggtccgcc gcccgagggc cacggcctgc tgggcacgat catccgcgat ggcgtctcgc
      541 tgcggatccc ggacatcgcc cgccatccgg actcgtacgg ctttccgccc caccacccga
      601 agatgcagtc gctgctcggc gtgccggtgc ggatcgccgg cgacccggtc ggcaacctgt
      661 acctcacgga gaagctcggc gcgccggagt tcagcgacga ggaccagcag ctcgtcgaga
      721 tgttcgccgt gcacgcaggg atcgccatcc agaacgcccg gctgcaccag gaggtgcaga
      781 agctggcgat cgtcgacgag cgactgcgca tcagccgcga cctgcacgat gggatcatcc
      841 agagcatcta cgcggtgagc ctgtcgctcg aggacgtggc cgagctcgtc gacgagaacc
      901 cgggcgaggc ggtcgcccgc gttgaccgat cgatcgaccg gctgcacacg acgatcggcg
      961 acatccggac gttcatcgtc gggctcgggc cggaggtgga cgacggcctc ggcggcgcga
     1021 tcgaggcgat ggccgcggag ctgctcgccg gcacgggcat cgacctcacc ctcgacctcg
     1081 cggctgccga gaaggtggac gcacgggtcc acccggaggc cgcgcacgag ctcgtccaga
     1141 tcgcgcgcga ggcgttgagc aacgtcgccc gccacagcgg cgcgcggcac gcgtccgcgc
     1201 ggctcgtcgt cgccaacgag gaggcggtgc tgcgcatcga ggacgacggt gtcgggttcg
     1261 acacggagcg gcgcctcggc agcgggcact tcgggctcgc gaacctgcgc gaccgggctg
     1321 ccggcgtcgg cggcacgctg accatcgaca gcgggcgcga ccggggcacg cgtatcatcg
     1381 tgcggctgcc catcgccgcc tcggagagcc cgtgaccgaa ccgcgccctg tcgccgtgcc
     1441 caagacgctg cgtctcctga tcgtcgacga tcacgaggtc gtcaggcagg gcctcgtcgc
     1501 gctcctcgac cggcgcgaag
//
LOCUS       DATDDI010000898         3092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_60969, whole genome shotgun sequence.
ACCESSION   DATDDI010000898 DATDDI010000000
VERSION     DATDDI010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60969"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /locus_tag="VIU37_13115"
     CDS             complement(<1..1184)
                     /locus_tag="VIU37_13115"
                     /inference="COORDINATES: protein motif:HMM:NF024876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase MA family metallohydrolase"
                     /protein_id="HEY6014948.1"
                     /translation="MGELTRRLAVLGLLATTVLGLAPAASAASWATFGTPTATSTFGT
                     GIEFRQPVTLDRAVSRVELLLTVADAIGPTVTVLAAPGGTGASTLSHLLDTTGDGHLL
                     PNTPIVARWRLVSADDPADTVTGPALRLTYADERFSWQTEAGDLVRVHWYEGSAAFGR
                     RALKIGEDAVRKAADLFGVSESKPVDFYVYADQQAFYDALGPGTRENVGGEADAGIRT
                     LFALIPPSQIDDAWVGTVIPHELTHLVIDTAAGNPYHFLPRWLNEGIAVYESQGYGTS
                     DRGLVADAVSAGTLIPLDGLVGQFPTSADGFYLAYAESVSAVDFMFRTYRQDALVKLV
                     KSYKSGRTDDEAFRQGLGIDASAFGAAWLASLGAGAPTRYGPQPAPAGPVPSAWLAAG
                     GGG"
     gene            complement(1172..2734)
                     /locus_tag="VIU37_13120"
     CDS             complement(1172..2734)
                     /locus_tag="VIU37_13120"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY6014949.1"
                     /translation="MRRLVAAVLVLVAATAGCSPSPAASSDRPARILTGAPTSLDPAV
                     QGDAGSAAISAQLFESLTTFDSDLHLQPALAESWQFEPGSRKITFRMRPGLTFSDGTP
                     LRASDVVRSWLRLIDPASPSPLASLALDIAGADGYLRGQSSDPASVGLHADDSAGTLT
                     VDLVRPASDFPNIVAGPTFAVVPPGVGRDPAALEPGTSFVSSGGYVLSGTSDTGLTLT
                     ANPHYWAGPAAIGTIELVGDLGGRSEVDAFQASELDYAPLNGADATWIGYDRTLGPQL
                     RQVASLSTQYYGFDTSRPPFDDVRVRRAIGAAVDWRRLATLAGSGGTLEVANSMVPPG
                     IPGRSDADYVPAYDPAGARKLLAEAGYPGGAGFPATTLMTGGGPFDQAIVDAVKRVLG
                     IDLSFESMGDGYFDRLASDPPQMWALGWVADYPGRNDFLGVLLGTGASANYGRWSSAR
                     FDAAIAQAGSATDPSAIAAAYDQAESIVRDDVPVIPVAYGPGWALSRTGLLGAAQNGL
                     GIVRMAGLAWAN"
BASE COUNT          466 a         1106 c         1130 g          390 t
ORIGIN      
        1 ccgccgccgc cggcggccag ccatgcggat ggaacgggtc cggcgggcgc cggttgcggg
       61 ccgtaccgcg tcggtgcccc ggcgccgaga ctcgccagcc aggcggcccc gaatgccgac
      121 gcgtcgatgc cgagcccctg ccggaaggcc tcgtcgtcgg ttcgtcccga cttgtacgac
      181 ttgacgagct tcacgagcgc gtcctggcgg taggttcgga acatgaagtc gaccgccgaa
      241 acactctcgg cgtaggccag gtagaaccca tccgcgctcg tcgggaactg gccgaccagg
      301 ccgtcgagcg ggatcagggt cccggccgac acggcgtcgg cgaccagtcc gcgatcggac
      361 gtgccgtacc cctggctctc gtagaccgcg atgccctcgt tgagccagcg tggcaggaag
      421 tgatacgggt tgccggcggc ggtgtcgatg accaggtggg tcagctcgtg cgggatcacg
      481 gtcccgaccc aggcgtcgtc gatctggctc ggcgggatga gcgcgaagag ggtccggatc
      541 ccggcgtccg cctcgccgcc gacgttctcg cgcgtgccgg gccccagcgc gtcgtagaac
      601 gcctgctggt cggcgtacac gtagaagtcg accggcttgg actcgctgac accgaacagg
      661 tccgccgcct tgcgcacggc gtcctcgccg atcttgagcg cccgccgacc gaacgcagcg
      721 gaaccctcgt accagtggac ccggacgaga tcgccggcct ccgtctgcca gctgaaccgc
      781 tcgtccgcgt aggtcaaccg cagcgccggg ccggtcacgg tgtccgccgg atcgtcagcc
      841 gagacgagcc gccagcgagc gacgatcggc gtgttcggca ggaggtgacc atccccggtc
      901 gtgtcgagca ggtggctgag cgtcgacgcg cccgttccac ccggagccgc gaggacggtc
      961 accgtcggtc cgatcgcgtc ggccacggtc agcagcagct cgacccggct caccgcccgg
     1021 tcgagcgtga cgggctggcg gaattcgatg ccggtcccga aggtcgaggt cgcggtcggc
     1081 gtgccgaacg tcgcccagct ggccgcggac gcggccgggg cgagcccgag caccgtcgtc
     1141 gcgagcaggc ccaggacggc gagccggcgc gtcagttcgc ccatgccagt cccgccatcc
     1201 ggacgatgcc aagtccgttc tgcgccgcgc ccagcagtcc cgtccgcgac agcgcccagc
     1261 cgggtccgta ggcgacgggg atgaccggaa cgtcgtcgcg gacgatcgac tcggcctggt
     1321 cgtaggccgc cgcgatcgcg ctcggatcgg tggccgaccc ggcctgggcg atcgccgcat
     1381 cgaatcgcgc ggagctccag cgcccgtagt ttgccgacgc gcccgtcccg agcagcaccc
     1441 ccaggaagtc gttgcgcccg ggatagtccg cgacccagcc gagcgcccac atctgcggcg
     1501 ggtcgctggc gagccggtcg aagtagccgt cgcccatcga ttcgaacgag aggtcgatcc
     1561 cgagcacccg cttgacggcg tcgacgatcg cctggtcgaa cggtccgcca ccggtcatca
     1621 gcgtggtcgc cgggaacccg gccccgcccg gatagcccgc ctcggcgagc agcttgcggg
     1681 cgccggccgg atcgtaggcg ggcacgtagt cggcatcgct ccgcccggga atgccgggtg
     1741 ggaccatcga attggccacc tcgagcgtgc cgccggagcc ggccagcgtg gccagccgcc
     1801 gccagtccac cgccgcgccg atcgcccgcc ggacgcggac gtcgtcgaac ggcgggcgcg
     1861 aggtatcgaa gccgtagtac tgcgtcgaca gggaggcgac ctgccggagc tgggggccca
     1921 gcgtccggtc gtagccgatc caggtagcgt cggcgccgtt gagcggcgcg tagtcgagct
     1981 cgctggcctg gaacgcgtcg acctcgctcc gaccgcccag atcgcccacc agctcgatcg
     2041 tgccgatcgc ggcgggtcca gcccagtagt gcggattggc cgtcagcgtc aggccggtgt
     2101 cggaggtgcc gctcaggacg tacccgccgc tggagacgaa cgacgtgccc ggctcgagcg
     2161 ccgcggggtc cctgcccacg ccgggcggga ccaccgcgaa cgtgggcccg gcgacgatgt
     2221 tcggaaagtc ggaggcgggg cggacgagat ccaccgtgag ggtgccggcc gaatcgtcgg
     2281 catgcagccc gaccgacgcc ggatcggacg actggccgcg caggtagcca tccgcaccgg
     2341 cgatgtcgag cgccagcgac gccagtggcg acggggatgc cgggtcgatc agccggagcc
     2401 agctccggac gacgtccgag gcgcgcagcg gcgtcccgtc ggagaacgtc agcccgggcc
     2461 gcatccggaa cgtgatcttc cggctgccgg gctcgaactg ccaggattcc gcgagcgccg
     2521 gctgcaggtg gaggtcgctg tcgaacgtgg tcagcgactc gaacagctgg gcgctgatcg
     2581 cggcactgcc ggcatcgccc tggaccgccg ggtcgagcga ggtcggggcc ccggtcagga
     2641 tccgggccgg tcgatcggac gaggcggccg gcgagggcga acagcccgca gtcgccgcga
     2701 cgagcacgag aacggcggcg acgaggcggc gcatcgcgcg gagtatacga gcgctcgggg
     2761 agggacccgc accccaaggt gcgtgagcga ggagcacagc cgacaacgcc cgcatcggcc
     2821 gctccagcgg gcgcgaatga ggcctcgctg gtccacaccg ccgggggaac gatggacggg
     2881 ccgcgaggcc tctgcagcga taacgacaag gcgctcggaa cgttaggggt ccgagccgcg
     2941 aattcgatcc gattctcccg ccgccgtacg atggcccaac cgccatgccc gccgaagccg
     3001 tcctccacct ccgcaacgcg ctgactcgcc ggatcgaacc ggtcgagccg ctggagccgg
     3061 ggcgcgtccg gatgtacacc tgcggcccga cg
//
LOCUS       DATDDI010000899         1532 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_560736, whole genome shotgun sequence.
ACCESSION   DATDDI010000899 DATDDI010000000
VERSION     DATDDI010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560736"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1532)
                     /locus_tag="VIU37_13125"
     CDS             complement(<1..>1532)
                     /locus_tag="VIU37_13125"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HEY6014950.1"
                     /translation="LDVIDECIDLTLNDRQSGHPGGSRSKGHLLLATLLSGAMRWDIR
                     QPWRRFADRFVLSAGHTVPLIYATLAVLNEGLRARHEADGDPRFAFPDDGRWALTWED
                     LRTFRHRGGLPGHAEMAGKTLFFKANTGPSGHGMPFAAGQALALKMAGAEEVKVFAVE
                     GEGGLTPGATHETLNSAFGLGLSNLVLLVDWNDFGIDERAASSVVNGGPEDWLAPHGW
                     RVVGTPDGMSWGPVTRTVLDVARGDNMDRRPSAAWFRTQKGRGYGKVDAASHGTPHAL
                     HSPAFWAGRQGFMERYGVTYEGVGQPAPSDPVERAAQAEANLRVAMSVLRRDPALVTW
                     LSDRLLAIAGSVPDEIPGVRLGRPDSAGVFSDPRITDARAYPAGLFKAPGERAPNRAA
                     LGTWGAWANALGKHDYGRPLFVVASADLAESTNIAGFGKDFGEQPGFGWYERDSNPTG
                     AVLPQEITEFANAGIVAGMTSVNFAEDPFTGYDGFWGACSTYASFSYLKYGPMRLFSQ
                     LA"
BASE COUNT          218 a          530 c          570 g          214 t
ORIGIN      
        1 ggcgagctgc gagaacagcc gcatcgggcc gtacttgagg tagctgaacg aggcgtaggt
       61 cgagcaggcg ccccagaacc cgtcgtaccc ggtgaagggg tcctcggcga agttgaccga
      121 ggtcatgccg gcgacgatcc ccgcgttggc gaactcggtg atctcctgtg gcaggaccgc
      181 gccggtcggg ttcgagtcgc gctcgtacca gccgaacccc ggctgctcgc cgaagtcctt
      241 gccgaagccg gcgatgttgg tcgattcggc caggtcggcc gaggcgacca cgaacagggg
      301 ccggccgtag tcgtgcttgc ccagcgcatt ggcccacgcg ccccaggtcc cgagcgcggc
      361 tcggttggga gcccgctcgc cgggagcctt gaacaggccg gcgggatagg cgcgagcgtc
      421 ggtgatccgt gggtcgctga agacgccggc gctgtccggg cgcccgagac ggacgccggg
      481 gatctcatcg gggacgctgc cggcgatcgc caatagccgg tccgacagcc aggtgacgag
      541 cgccggatcc cggcgcagga cggacatcgc gactcgcagg ttggcttcgg cctgcgcggc
      601 tcgctcgacc ggatccgacg gggcgggctg gccgacgcct tcgtacgtca cgccgtagcg
      661 ctccatgaac ccctggcggc cggcccagaa ggccgggctg tgcagcgcgt gcggcgtgcc
      721 gtgcgaggcg gcgtccacct tgccgtagcc gcgacccttc tgcgtccgga accaggccgc
      781 ggacggacgc cggtccatgt tgtcgccgcg ggcgacgtcg agcacggtgc gggtcaccgg
      841 accccatgac atcccgtccg gcgtcccgac gacgcgccag ccgtgcgggg cgagccagtc
      901 ctccggcccg ccgttgacga cgcttgacgc cgcgcgctcg tcgatcccga agtcgttcca
      961 gtcgaccagc aggaccaggt tcgagaggcc caggccgaag gccgagttga gcgtctcgtg
     1021 cgtggcgccc ggcgtgaggc cgccctcgcc ctcgacggcg aagaccttga cctcctccgc
     1081 cccggccatc ttgagcgcga gcgcctggcc ggccgcgaac ggcatgccat ggccggacgg
     1141 acccgtgttg gccttgaaga acagcgtctt gccggccatc tcggcgtgtc cgggcaggcc
     1201 gccgcggtgg cggaaggttc ggaggtcctc ccaggtcagc gcccatcgcc cgtcgtcggg
     1261 gaaggcgaag cgcggatcgc cgtcggcctc gtgtcgcgcg cgcagcccct cgttgagcac
     1321 ggcgagcgtc gcgtagatga gcggcaccgt gtggccggcc gacaggacga accggtcggc
     1381 gaagcggcgc cacggttgcc ggatgtccca gcgcatggcg ccggacagca gggtcgcgag
     1441 caggaggtgg cccttcgatc gcgatccgcc gggatggccc gactgccgat cgttcagggt
     1501 gaggtcgatg cactcgtcga tgacgtcgag ga
//
LOCUS       DATDDI010000900         2504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_476852, whole genome shotgun sequence.
ACCESSION   DATDDI010000900 DATDDI010000000
VERSION     DATDDI010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476852"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..583)
                     /locus_tag="VIU37_13130"
     CDS             complement(128..583)
                     /locus_tag="VIU37_13130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014951.1"
                     /translation="MPDRLPSPGPSFLREQAVRADRAMRAGMGRPSEAPDGWWLAVLW
                     VVDDDGVVAFSDVAPPAGPPPDPPLARLGPAISGQLSGLILEDGGRLQMRLGLIQPPD
                     DPDRPWRVPVAIRAAFRFEPARAATMRPNELAETVLAGFRRSVEGLRKP"
     gene            complement(632..994)
                     /locus_tag="VIU37_13135"
     CDS             complement(632..994)
                     /locus_tag="VIU37_13135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014952.1"
                     /translation="MTAIDAAALVRSKSTPQPRNRLLSWISGDYQADVPSKAEAQAIA
                     PPDDEVRREILRLELEAHVASLQAEADAIRSEAAAEGRTIDLPGLSAAGAAEPEAPDL
                     AHGETATEPDAAEDEPTA"
     gene            complement(1204..>2504)
                     /gene="guaA"
                     /locus_tag="VIU37_13140"
     CDS             complement(1204..>2504)
                     /gene="guaA"
                     /locus_tag="VIU37_13140"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF000848.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEY6014953.1"
                     /translation="ELGGDVVPAERQREYGPASVTITGDDDLFAGIEREQPVWMSHGD
                     SITRLPEGFRATAQTDSTPFAGLADPSRNLYGIQFHPEVVHTPRGRDVLRNFVVGIAG
                     IEPTWTAANFADTTVAAIRERVDAHARATGSDGLVICALSGGVDSAVAAALVHRAVGD
                     RLTCIYVDHGLMRKKESELLRVTFERDLGMRLVMVDARQRFLARLAGVEDPEQKRKII
                     GDEFIRVFEEEAAKLGRIDFLTQGTLYPDVIESATSETKAAQKIKTHHNVGGLPADLR
                     FQLIEPLRYLFKDEVRKVGLELGLPEAMVQRQPFPGPGLAIRIIGEVTAERLDTLREA
                     DWIVIDEIKAANLYRSVWQSFAILTPVRSVGVMGDGRTYANVVAIRAVTSEDGMTADW
                     AKLPYDVLGKISSRIVNEVPGVNRVVYDISSKPPATIEWE"
BASE COUNT          345 a          908 c          875 g          376 t
ORIGIN      
        1 gtcgccgccg gacccgtcgt cacgggtgcc tgcctgcccg cgggcggcgg attcgcgctt
       61 gcgcaactcg tccatgaaat cgtcgaagag gtcacgcatg tgccccgagt ctacgcgcct
      121 gccgccctca gggtttgcgc aggccctcga ccgatcggcg gaagccggcg agcaccgtct
      181 cggcgagctc gttcgggcgc atcgtcgccg cccgggcggg ctcgaaccgg aaggccgcgc
      241 ggatcgccac ggggacgcgc cacggccggt cggggtcgtc cggcggctgg atcagcccga
      301 gccgcatctg gagccgcccg ccgtcttcga ggatcagtcc ggacagctgg ccgctgatgg
      361 cgggacccag ccgtgccagg ggcgggtcgg gcggcggtcc ggccgggggg gccacgtcac
      421 tgaaggcgac caccccgtcg tcgtcgacga cccacaggac cgcgagccac cagccgtcgg
      481 gcgcttcgga cggcctgccc atcccggctc gcatcgcccg atcggcacgg accgcctgct
      541 cgcggaggaa cgaaggaccg ggtgacggca ggcggtcggg cacgtcggca ggatagccct
      601 ggcgggccgg tccccggcat gcaccgcaac gtcaggccgt cggttcgtcc tccgcggcat
      661 cgggctccgt cgccgtctcc ccgtgcgcca ggtcgggcgc ctcgggctcg gcggctccgg
      721 ccgccgagag gcccgggagg tcgatcgtcc gaccctccgc cgcggcctcg gaccggatgg
      781 cgtccgcctc ggcctgcagg ctggccacat gggcctcgag ctcgaggcgc aggatctcgc
      841 gcctgacctc gtcgtcgggc ggggcgatcg cctgggcctc ggccttggac ggcacgtccg
      901 cctggtagtc gccgctgatc caggagagca gccggttgcg tggctgcggc gtcgacttcg
      961 agcggaccag cgcagccgcg tcgatcgcgg tcacgcccgg cacgctcgga tcaccctccg
     1021 cgacgaggtt ggcgccgcac gacggacaca cggtcgcgtc cggcgtcagc gccgcggaac
     1081 accatggaca gactccgctc accggacgtt cccccgtact cgatgtgtcg gccatgcgcg
     1141 catgctaccg cgcgattccg ggcgcacgat agcccatcgg tcaggggtga attcgggact
     1201 cggtcactcc cactcgatcg tggcgggcgg cttggagctg atgtcgtaga ccacccggtt
     1261 gacgcctggg acctcgttga cgatgcggga tgagatcttg cccagcacgt cgtacggcag
     1321 cttcgcccag tcggcggtca tcccgtcttc cgacgtcacg gcacggatcg ccaccacgtt
     1381 cgcgtacgtc cggccgtcgc ccatgacccc gaccgatcgg accggcgtga ggatcgcgaa
     1441 cgactgccag accgagcggt acaggttggc ggccttgatc tcgtcgatca cgatccagtc
     1501 ggcctcgcgc agcgtgtcga gccgctcggc cgtgacctcg ccgatgatcc ggatcgccag
     1561 gccggggccg gggaagggct ggcgctggac catcgcctcc ggaagcccga gctccaggcc
     1621 caccttgcgc acctcgtcct tgaacaggta ccggagcggc tcgatcagct ggaagcgcag
     1681 gtccgccggc agcccgccga cgttgtggtg ggtcttgatc ttctgggcgg ccttggtctc
     1741 cgacgtcgcc gactcgatga cgtccgggta gagcgtgccc tgcgtcagga aatcgatccg
     1801 gccgagcttg gcggcctcct cctcgaagac ccggatgaac tcgtcaccga tgatcttccg
     1861 tttctgctcg ggatcctcca ccccggccag cctggccagg aaccgctggc gcgcgtcgac
     1921 catcacgaga cgcattccga ggtcgcgctc gaaggtgacc cgcagcagct cggattcctt
     1981 cttgcgcatc agcccgtggt ccacgtagat gcaggtcagc cggtcgccga cggcgcggtg
     2041 cacgagcgcc gcggcgacgg ccgaatcgac accgcccgag agcgcgcaga tgaccagccc
     2101 gtcggagccg gtcgcccttg cgtgcgcgtc gacccgctcg cgaatcgcgg cgaccgtggt
     2161 gtcggcgaaa ttcgccgcgg tccaggtcgg ctcgatgccg gcgatcccga ccacgaagtt
     2221 gcgcagcacg tcgcgacctc gcggcgtatg gacgacctcg ggatggaact ggatgccgta
     2281 gaggttccgg ctgggatccg ccagcccggc gaacggcgtc gagtcggtct gcgcggtcgc
     2341 ccggaaccct tcgggcagcc gggtgatcga atcgccgtga ctcatccaga ccggctgctc
     2401 gcgctcgatc cccgcaaaca ggtcgtcgtc gccggtgatc gtgacgctgg ccgggccgta
     2461 ctcccgctgg cgttccgcgg ggaccacgtc gccgccaagc tcgc
//
LOCUS       DATDDI010000901         3046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_622685, whole genome shotgun sequence.
ACCESSION   DATDDI010000901 DATDDI010000000
VERSION     DATDDI010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622685"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..739)
                     /locus_tag="VIU37_13145"
     CDS             complement(<1..739)
                     /locus_tag="VIU37_13145"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6014954.1"
                     /translation="MTEPGSAIVDLHGASIRRGGRTILGPIDWCVRQGERWVVIGANG
                     SGKTTLLSIVGLTLWPTAGTVDVLGARYGKVDSRELRRRIGAAGSAVELHLRDDLTPV
                     DLVMTARHAATEPWWHVFEDADRVRARELLDRLGIGAIADHPFGTLSAGERRRVSIAR
                     ALMPDPELLLLDEPAASLDLGARETLLRDLSRLAAEPRPSAIVLVTHHVEEIPPGFTH
                     ALLLREGAVVATAPLTDVMTSAHLSGCF"
     gene            complement(736..2814)
                     /locus_tag="VIU37_13150"
     CDS             complement(736..2814)
                     /locus_tag="VIU37_13150"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEY6014955.1"
                     /translation="MEQCTVSIAEGADCPANKSRLVVPDDSAIVARRNAILGLLASGR
                     TPMSGSTYTAADFAAAQHEPVMLASQATPHWIAPHFVWAVRDELTQKLCGDQPSCEAL
                     DAGGLRVITTLDVKLQKIAEKWVRAAAIVPHSKDPTAAAKALGFDKLEPWMANLRSKT
                     LRNGALVAYDYQTGELVAYVGSASYYSTSTRPEFQPQYDVAGKGWRQPGSAFKPFNYV
                     TGIDDHTLTAATMLMDVSTDFGGGYSPNDADLLERGPVRVRNALQFSLNIPAVRAMAV
                     NTPDHVFAKAREFGMTFQTDKTQAGLALALGVQEVHPVDLVTAYGTLANGGRAIGHTT
                     ILNVQDRNGKDVVTPYAPPAPTQVVSPQAAFIVTDILSGNTDPKINPFWGKFAVAGPD
                     RRRPATLKTGTNNDAKDLNAYGFIAPPTETDRAGGAYALAVGVWNGNSDNSLVSTAKA
                     PLFSIDVSTYVWQGFVQEASAKWPVEDFAAPADGLTQADIDPWTGLLATSGGPSVKEW
                     FITGTEPKDRLTPGVCGEAILSQVGYESRFSNWMAADKDWLRRAAIGPGTAGGSDRSR
                     TSYFYNGRFQPFGRSWGPLLGGEGCASPSPSPSCIPLPTPDANGVIPSIEIPPPVDSG
                     SAAGSGPPAAVPCPTPSEAPSLPPEASPSAEPSLPPEITPTPAITPTPEITPPPSASP
                     SAADVSPLPS"
     gene            complement(2857..>3046)
                     /locus_tag="VIU37_13155"
     CDS             complement(2857..>3046)
                     /locus_tag="VIU37_13155"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY6014956.1"
                     /translation="EIIQSVRVTQEFQGVEGKRQIITAYLNQNYYGNQSYGVKAAAES
                     YFGIDLSKIDPAQAAILA"
BASE COUNT          419 a         1042 c         1112 g          473 t
ORIGIN      
        1 cgaagcagcc cgacaagtgg gcggaggtca tgacgtcggt cagcggcgcg gtggcgacga
       61 ccgcaccctc gcgcagcagc agcgcgtggg tgaagcccgg cgggatctcc tcgacgtggt
      121 gcgtgaccag gacgatggcc gacggacgcg gctcggccgc cagccgcgag aggtcgcgca
      181 ggagcgtctc ccgggcgccg aggtcgaggc tcgccgccgg ctcgtccagg aggagcagct
      241 ccgggtccgg catcagcgcc cgcgcgatcg agacgcggcg ccgctcgccc gccgacagcg
      301 tgccgaacgg gtgatcggcg atcgctccga tcccgagccg gtcgagcagc tcccgggcgc
      361 gcacccggtc cgcatcctcg aagacatgcc accacggctc ggtggcggcg tggcgcgccg
      421 tcatcacgag gtcgaccggc gtcaggtcgt cgcgcaggtg gagctcgacc gcactcccgg
      481 cagccccgat ccgtcgccgg agctcgcgcg agtccacctt gccgtagcgg gcgcccagga
      541 cgtcgaccgt cccggcggtc ggccacagcg tgaggcccac gatcgagagg agggtcgtct
      601 tgcccgaccc gttcgcgccg atcacgaccc accgctcgcc ctgccggacg caccagtcga
      661 tcgggccgag gatcgtgcgc ccgccccgcc ggatcgaggc gccgtgcagg tcgacgatcg
      721 ccgacccggg ctcggtcacg acgggagcgg tgacacgtcg gcggccgatg ggcttgcgga
      781 cggcggtggc gtgatctccg gcgtcggcgt aatcgcgggc gtcggcgtga tctcgggcgg
      841 cagcgacggc tccgccgacg ggcttgcctc cggcgggagc gacggcgcct cggacggcgt
      901 cggacagggg accgcggcgg gcggcccact cccggcggcc gagcccgaat cgaccggcgg
      961 cgggatctcg atcgacggga tcacgccatt cgcgtcgggc gtcggcaacg ggatgcagct
     1021 cggcgacggg ctcggtgagg cgcagccctc tccgcccagc agcggtcccc atgaccgccc
     1081 gaacggctgg aaccggccgt tgtagaagta gctcgtgcgg ctccggtccg agccgccggc
     1141 cgtccccggc ccgatcgcgg cgcggcgcaa ccagtccttg tcggcggcca tccagttgct
     1201 gaagcgcgat tcgtagccga cctggctgag gatcgcctcc ccgcacacgc ccggcgtcag
     1261 ccggtccttg ggctcggtgc cggtgatgaa ccattccttg accgacgggc cgccggacgt
     1321 ggcgagcagg ccggtccatg ggtcgatgtc ggcctgggtc agcccgtccg ccggcgccgc
     1381 gaaatcctcg accggccact tggcgctggc ttcctggacg aacccctgcc agacgtacgt
     1441 cgacacgtcg atcgagaaga gcggtgcctt cgcggtcgac accaggctgt tgtccgagtt
     1501 gccgttccac acgccgaccg ccagggcgta ggcgccgccc gcccggtccg tctccgtcgg
     1561 cggggcgatg aagccgtagg cattgaggtc cttggcgtcg ttgttggtgc cggtcttgag
     1621 cgtcgccggg cggcgccggt ccggaccggc gacggcgaac ttgccccaga acgggttgat
     1681 cttggggtcg gtgttgccgc tcaggatgtc ggtcacgatg aacgccgcct gcgggctgac
     1741 cacctgcgtc ggggccgggg gtgcatacgg cgtcaccacg tccttcccgt tgcgatcctg
     1801 gacgttgagg atcgtcgtgt ggccgatggc ccggccgccg ttggcgagcg tgccgtaggc
     1861 ggtcaccagg tcgaccgggt ggacctcctg gacaccgagc gcgagcgcca ggcccgcctg
     1921 ggtcttgtcg gtctggaagg tcatcccgaa ctcccgggcc ttggcgaaga cgtgatcggg
     1981 cgtgttgacg gccatcgccc ggacggccgg aatgttgagc gagaactgga gcgcattgcg
     2041 gacgcgaacc ggtccgcgtt ccaggagatc cgcgtcgttc ggggaatagc cacccccgaa
     2101 gtcggtcgag acgtccatca gcatggtggc ggcggtcagg gtgtgatcgt cgattccggt
     2161 gacgtagttg aacggcttga acgcggaccc gggctgccgc cagcccttgc cggcgacgtc
     2221 gtactggggc tggaactccg gtcgggtcga ggtcgagtag tagctggcgc tcccgacgta
     2281 ggcgaccagc tcgccggtct ggtagtcgta ggcgaccagc gccccgttcc ggagcgtctt
     2341 gcttcgcagg ttcgccatcc acggctcgag cttgtcgaac ccgagcgcct tggccgcagc
     2401 ggtcggatcc ttgctgtggg gcacgatcgc cgccgcccgg acccatttct cggcgatctt
     2461 ctggagcttg acgtcgaggg tggtgatgac ccgcaggcct cccgcgtcga gcgcctcgca
     2521 tgacggctgg tcgccgcaca gcttctgggt cagctcgtca cggaccgccc agacgaagtg
     2581 cggggcgatc cagtgcggcg tcgcctggct ggccagcatg accggctcgt gctgcgcagc
     2641 ggcgaaatcg gcggccgtat acgtgctgcc cgacatcggc gtccggccgg aggccagcag
     2701 gccgaggatg gcgttccggc gagcgacgat cgccgagtcg tccggcacca cgagccggct
     2761 cttgttggcg ggacagtcgg ccccctcggc aatcgagacc gtgcactgtt ccacggcgtt
     2821 gcggacgaga tagtagttgg acggcgactt tggcagtcag gccaggatcg ccgcctgggc
     2881 aggatcgatc ttcgagaggt cgatgccgaa gtacgactcg gccgccgcct tcacgccgta
     2941 gctctggttc ccgtagtagt tctggttcag gtaggcggtg atgatctgcc gcttgccttc
     3001 gacgccctgg aactcctgcg tgacccggac cgactggatg atctcc
//
LOCUS       DATDDI010000902         4676 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_227450, whole genome shotgun sequence.
ACCESSION   DATDDI010000902 DATDDI010000000
VERSION     DATDDI010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4676
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227450"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(225..1574)
                     /locus_tag="VIU37_13160"
     CDS             complement(225..1574)
                     /locus_tag="VIU37_13160"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY6014957.1"
                     /translation="MEDSFIRRRRLVAGLVASILIVGACSSSGATATPSSEASAAAPS
                     AEASTGTESAAPSSGGQLGGVVTVIGTWGGSEQDSFLAMVKPFEDATGVDVQYTGTRD
                     INTVLSTGVASGILPDVAGLPGPGQMTEWAKAGALKPLDDVLDVATYKADTAPALVQL
                     GTVDGKISGVFIKAAVKGLIWYNPANFKGDAPATWDALEATSPAPAKNLWCIGLESGA
                     ASGWPGTDWIEDFVLRQSGPDVYDAWVAGTQKWTSPEIKSAFEAFGKVVGQAYGGSNA
                     VLTTNFGDGGNQLFTNPPGCLFHHQASFITDFFKKQGGAKDGQFDFFRMPDINSAYAG
                     ATTGAGDLFGMFNDTPQARALMAYLVTADAQKIWVERGGALSANTKVTDYPDAVSKRS
                     ADILANAGVFRFDASDLMPTAMNDAFWKAILDYVKDPNKLDSILSNLDTVQASAYGG"
     gene            complement(1640..2677)
                     /locus_tag="VIU37_13165"
     CDS             complement(1640..2677)
                     /locus_tag="VIU37_13165"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY6014958.1"
                     /translation="MPKRPTSADVAAAAGVSRTTVSFVLNEREGVKIPDETRQRVLAA
                     AAKLDYHPNSVARQLAGGASRALGLVLRQTPEQVANDGVLAETLRGLSDAARAANHRV
                     LVETLAPADGHYANLLRSGRTDGLIVSGPRYDDIELVELVRDGFPVVIQGSQPGLDVP
                     SVDVDNEAGARMAVEHLLSLGHRRIACITNAPLAYTAASERLTGYREALAAAGLPDDP
                     ALVAEGAFDASSGHRAIAEILARTTPDAIFVASDVVAIGAIAGLRDAGFAVPGDVSVV
                     SFDAIPLAAYLDPPLTTIRLPAYDLGLAAGRAILERIAGRPVAARTLLPTELIVRAST
                     APRHGAVARPA"
     gene            2901..4586
                     /locus_tag="VIU37_13170"
     CDS             2901..4586
                     /locus_tag="VIU37_13170"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEY6014959.1"
                     /translation="MTHAGHAIAVQSPRFGDDWWQRGVIYQVYPRSFADSDGNGVGDL
                     PGIVDHLDYLGRDGLGVDALWLSPIYPSPGLDLGYDVSDHGSVDPLFGTEADFDRLVA
                     EAHRRGIRVILDLVLNHTSDQHPWFRSSRSSRTGPFADWYLWRDPAGYGPDGDPLPPN
                     NWTSYFGGPGWQWEPRRKQFYFHTFLTEQPELDWRTPAVEAAQFAMVRRWLERGVDGF
                     RLDVFNAFLKHPGLPSNPSRPGTSTWARQVHRYDRDQPDLKDLIGRFRAMVDAVPGRM
                     TVGELFDGQIEQAAELTAPRHLVFDWELLGTQWTAAAVNAALARRDAVFGEDRWPTVV
                     LSNHDQSRHASRLVASVGGHDPDAVAKAAAVLLLTVRGTPFIYYGEEIGMEDVEIPPE
                     ESVDPPAARVGPDFAWWDRSRCRTPMPWSGGPGAGFTTGRPWLRIGADSATRNVAAQL
                     DDERSVLALYRRLTALRAGMPALQVGAFELLPGAGSSIVAYRRTTPDQTLLVAINLSR
                     EATTWPVPVAPAGTCWRTALATGVEVPAGGVRVEGGSIRLEADEAQILEAVDD"
BASE COUNT          660 a         1619 c         1698 g          699 t
ORIGIN      
        1 cgatcgccgg cgccagccag acccagggtc gaaggcgacc gcgcatgcgg tcgggcgcga
       61 acgccagcag ccgttcggtc aggacgatgt agccgagcag gacgccgggc acgccgatca
      121 cgacgatcag cgcggtgatc aatcgactat ccaagggacc cctcctccgc gcatgtcacc
      181 ggaccggcgc ccgagggcgc cggtccggtc ggtgaccgtg tggatcagcc gccgtaggcg
      241 ctggcctgga ctgtgtcgag gttggacagg atcgagtcga gcttgttggg atccttgacg
      301 tagtcgagga tcgccttcca gaacgcgtcg ttcatcgccg tcggcatgag gtccgaggcg
      361 tcgaagcgga agacgccggc gttggccagg atgtccgcgg atcgcttcga gacggcgtcc
      421 gggtagtcgg tgaccttggt gttggctgac agggcgccac cacgctcgac ccagatcttc
      481 tgggcgtcgg cggtgacgag ataggccatc agggcccggg cctggggggt gtcgttgaac
      541 atcccgaaca ggtcgccggc accggtcgtg gcccccgcgt acgcgctgtt gatgtccggc
      601 atccggaaga agtcgaactg gccgtccttg gctccaccct gcttcttgaa gaagtcggtg
      661 atgaagctcg cctgatggtg gaacaggcag ccgggcgggt tggtgaagag ctggttgccg
      721 ccgtcgccga agttcgtcgt caggacggcg ttcgaaccgc cgtacgcctg gccgacgacc
      781 ttgccgaagg cctcgaacgc ggacttgatc tcgggcgacg tccacttctg cgtcccggcg
      841 acccaggcgt catagacgtc cggaccgctc tggcgcagga cgaagtcctc gatccagtcg
      901 gtgcccggcc agccggatgc ggcaccggat tcgaggccga tgcaccacag gttcttggcc
      961 ggagcgggtg acgtcgcctc gagggcatcc cacgtggccg gggcgtcgcc cttgaagttc
     1021 gccgggttgt accagatcag gcccttgacc gccgccttga tgaagacgcc ggagatcttg
     1081 ccgtcgaccg ttccgagctg gaccagcgcg ggagccgtgt cggccttgta ggtcgcgacg
     1141 tcgagcacgt cgtcgagcgg cttgagcgcg ccggccttgg cccactcggt catctggccg
     1201 ggccccggga ggccggcgac gtccggcagg atgccggagg cgacgcccgt cgacaggacg
     1261 gtgttgatgt cgcgggttcc cgtgtactgg acgtcgacgc cggtcgcgtc ctcgaacggc
     1321 ttgaccatcg ccaggaacga gtcctgctcg gagccgcccc acgtcccgat gacggtgacg
     1381 acgccgccga gctggccgcc cgacgacgga gccgcgctct cggtgccggt cgacgcctcg
     1441 gcggagggcg ccgctgcgga cgcctcggac gaaggtgtcg ccgtggcgcc gctgctcgag
     1501 cacgccccca cgatgagtat cgacgcgacc aggcccgcca cgagccgtcg acgccggatg
     1561 aacgaatcct ccattgcgct ctcctctttc tgcccggcat tcggccggcg ctgcgatgtg
     1621 ggccagctgg cccggatggt cacgcgggcc gtgccaccgc gccgtggcgc ggagcggtgg
     1681 aggctcgaac gatgagttcg gtggggagca gggtgcgggc ggccacgggc cggccggcga
     1741 tccgctcgag gatggcccgt ccggccgcca gaccgaggtc gtaggcgggc aggcggatgg
     1801 tggtcagggg tggatcgaga taggccgcca gcgggatggc gtcgaagctg acgaccgaca
     1861 cgtctcccgg cacggcgaag ccggcgtcgc gcagcccggc gatcgcgccg atggccacga
     1921 cgtcgctggc cacgaagatg gcgtcgggcg tggtccgggc gaggatctcg gcgatcgcac
     1981 ggtggccgct cgacgcgtcg aacgcgccct cggcgacgag cgccgggtcg tcggggagcc
     2041 cggcggccgc cagcgcctcg cggtacccgg tcagccgctc ggacgcggcg gtgtaggcga
     2101 gtggggcgtt ggtgatgcag gcgatccggc ggtggccgag cgacaggaga tgctcgaccg
     2161 ccatccgcgc gcccgcctcg ttgtcgacgt cgacgctcgg aacgtcgagc cccggctgcg
     2221 atccctggat cacgaccggg aagccgtcgc ggaccagctc gaccagctcg atgtcgtcgt
     2281 agcggggacc ggacacgatc agtccgtccg tccggccgga gcggagcagg ttggcgtagt
     2341 ggccgtcggc cggggcgagc gtctcgacca gcacgcgatg gtttgcggcc cgggcggcgt
     2401 ctgacaggcc acgcagcgtc tcggccagga cgccgtcatt ggccacctgc tcgggggtct
     2461 ggcggagcac caggccgagg gcgcggctgg cgccgccggc gagctggcgg gcgaccgaat
     2521 tcgggtgata gtcgagcttg gcggccgcgg cgaggacgcg ctgacgggtc tcgtcgggga
     2581 tcttgacccc ctcccgctcg ttgagcacga acgacacggt cgtccgcgac accccggctg
     2641 cggcggccac gtcggcgctg gtcggtcgct tgggcatgct cggtgccgct cctcctcagc
     2701 gctccaccgc ccgccgcagc tgaccccttg acccgtcggc gacgcttgtg gagactgtca
     2761 cgcacacttc cctccacgaa agtaacgcgc gtcagtaacg cgtatcaatg cagcctcgcg
     2821 ggtcgcttgt caagtccgaa ctgcgacacc ctggagtcgg aaccgccatc gttcgcgtcg
     2881 ccccatctca gggagatcac atgactcacg ccgggcatgc catcgccgtg cagtcgcccc
     2941 gcttcggcga cgactggtgg cagcgtggcg tgatctacca ggtctatccc cgcagcttcg
     3001 ccgacagcga cggcaacggg gtcggcgacc tgccgggcat cgtcgaccac ctcgactacc
     3061 tcgggcgaga cgggctcggc gtcgacgcgc tgtggctgtc gccgatctac ccgtcgccgg
     3121 gtctcgacct gggctacgac gtgagcgacc acggatcggt cgacccgctg ttcgggaccg
     3181 aggccgactt cgaccggctg gtcgccgagg cgcaccggcg cgggatccgg gtcatcctgg
     3241 acctcgtcct caaccacacc agcgaccagc acccctggtt ccggtcgtcg cggtcgagcc
     3301 ggaccgggcc gttcgccgat tggtacctgt ggcgagatcc ggccggctac ggacccgacg
     3361 gcgacccgtt gccacccaac aactggacgt cctacttcgg cggtcccggc tggcagtggg
     3421 agccgcgccg caagcagttc tacttccaca ccttcctgac cgagcagccc gagctcgact
     3481 ggcgcacgcc ggccgtggag gccgcccagt tcgcgatggt ccggcgctgg ctcgaacgcg
     3541 gcgtcgacgg cttccggctc gacgtcttca acgcgttcct caagcacccc ggcctcccgt
     3601 cgaacccgag ccgcccgggg acgtcgacct gggcccgcca ggtccaccgg tacgatcgtg
     3661 accagcccga cctcaaggac ctcatcgggc ggttccgggc gatggtcgac gccgttccgg
     3721 ggcgcatgac ggtcggcgag ctgttcgacg gccagatcga gcaggcggcc gagctgaccg
     3781 cgccacgcca cctcgtgttc gactgggagt tgctcgggac gcagtggacg gcggccgcgg
     3841 tcaatgccgc gctcgcccgc cgtgacgcgg tcttcggcga ggatcgctgg ccgaccgtcg
     3901 tcctgtccaa ccacgaccag tcgcggcatg cctcgcgcct ggtggcctcg gtcggcggcc
     3961 acgatcccga cgccgtggcg aaggccgcgg cggtcctgct gctcaccgtc cgcggcacgc
     4021 cgttcatcta ctacggcgag gagatcggca tggaggacgt cgagatcccg ccggaggaga
     4081 gcgtcgatcc gccggcggcc cgcgtcggcc ccgacttcgc gtggtgggac cgatcgaggt
     4141 gccggacgcc gatgccctgg tccggcggcc cgggcgccgg gttcacgacc ggccggccgt
     4201 ggctgcgcat cggcgccgac tcggcgacga ggaacgtggc cgcccaactg gacgacgagc
     4261 gttcggtgct tgccctgtac cggaggctga cggcgctccg ggccgggatg ccggcgctcc
     4321 aggtcggtgc gttcgagctg ctgccgggcg ccgggagctc gatcgtcgcc tacaggcgaa
     4381 cgacgcccga ccagacgctg ctggtggcga tcaacctgtc gcgcgaggcg acgacctggc
     4441 cggtcccggt cgcgccggcg ggcacgtgct ggcgaacggc cctggcgacc ggcgtcgagg
     4501 tcccggccgg cggcgttcgg gtggagggcg gctccatccg actcgaggcc gacgaggcgc
     4561 aaatcctgga ggccgtcgac gattgaggtg acgccccctg ctacgatggg ggtcactcga
     4621 ccgcacccgt tgcttggagc caccacgtgc cgctcgaatt cctgaagcgc cggggc
//
LOCUS       DATDDI010000903         1792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_290144, whole genome shotgun sequence.
ACCESSION   DATDDI010000903 DATDDI010000000
VERSION     DATDDI010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290144"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..409
                     /locus_tag="VIU37_13175"
                     /pseudo
     CDS             11..409
                     /locus_tag="VIU37_13175"
                     /inference="COORDINATES: protein motif:HMM:NF014166.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
     gene            694..1290
                     /gene="ruvA"
                     /locus_tag="VIU37_13180"
     CDS             694..1290
                     /gene="ruvA"
                     /locus_tag="VIU37_13180"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEY6014960.1"
                     /translation="MIASVEGVVGAVAADSLVIEVGGIGYRVFAAPSILASAQPGSRL
                     KLHTYHLVREDQQALYGFRTAEELGFFNLLLTVTGVGPKVALAIVGSRPTPDLQLAIL
                     LQDQAVLVSIPGIGKKLADRVIFELKEKVAAAGVAASGAGVGGLGAAESEVIAALQAL
                     GYSLAEAREASRIALADATIGGTLEDRVKAALRSLLRD"
     gene            complement(1316..>1792)
                     /locus_tag="VIU37_13185"
     CDS             complement(1316..>1792)
                     /locus_tag="VIU37_13185"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY6014961.1"
                     /translation="MRLSRRSEYGLRALVDLVRHDGDGPIPLTTLATRNRLPAKFLEQ
                     IMSTLKHAGIVRTTLGTHGGYAIAAQPSSVSIGRVVRLLDGALAPLPCVSLRYYEPCS
                     CPDEATCSLRDVMIDVRDSILEILDKETLADLAARQGRDSIDPRGRHADALAGRRP"
BASE COUNT          245 a          602 c          677 g          268 t
ORIGIN      
        1 cgtcgagcgg ctgttcttct cgcgcaacgt ccagacggcg ttcgccgtcg gccaggcgcg
       61 gggcgtcgtg ctgctcgccg cggcgcagca tgggacgccc gttcgctagg cgactccgaa
      121 cgaggtcaag agcgccatca ccgggtacgg cgcggcggac aaggagcagg tccagcggat
      181 ggtccagatg gtgctcggga tgagcgagct gccccggccc gacgacgccg ccgatgccct
      241 ggcgatcgcg acctgggtgg ccaacaccga gcgggccggg ctcaaggcca cggccggcgt
      301 gctggatcgc gcggcggtcg ccccgatcgt ccgcggcgag accggctacg agcgggccgt
      361 gcgcgaggca ctgctcgccg agcgcgccgc gaagcgcaac gcgtcttgac gtgaccaagc
      421 gtcgacgcgt cgccgacgtc ggaggcaagg cctgctgggt ccgggagtgc caggtttgcg
      481 cccgaggccc acttcagcct gcttctcgtc ccgtggcggt cgcgtttgcg cccggggacc
      541 gttgggcgag gatgcgaccg tgattcgcct cgcccagggt cggccgcgag cgtggacgat
      601 ggcctggcga ctccctggcg gaccacggac atggccttac ggtccagggg cgcaagtccg
      661 tcagtcgtca cagggctcct ttgagatcgg cccgtgatcg cgtcggtcga gggcgtcgtc
      721 ggcgcggtgg cggccgattc gctcgtcatc gaggtcggtg ggatcgggta tcgcgtgttc
      781 gcggctccgt cgatccttgc gagcgcgcaa ccggggagcc ggctcaagct ccacacgtat
      841 cacctcgttc gtgaggacca gcaggcgctg tacgggtttc gaacggcgga ggagctcggg
      901 ttcttcaacc tgttgctgac cgtgaccggg gtcggaccca aggtggcgct cgcgatcgtc
      961 ggcagccgcc cgacgcccga cctgcagctg gcgatcctgc tccaggacca ggccgtgctc
     1021 gtgtcgatcc cggggatcgg caagaaactg gccgatcggg tgatcttcga gctcaaggag
     1081 aaggtggcag cggccggcgt cgcggcctcg ggcgccgggg tcggcgggct cggcgctgcc
     1141 gagagcgagg tgatcgcggc gctccaggcg cttggctatt cgctggccga ggcgcgcgag
     1201 gcgtcacgga tcgccctcgc cgacgcgacg atcggcggta ccctcgagga tcgggtcaag
     1261 gcggccctgc ggagcctgct tcgggactga agcggttcgg cccggcctcg cctcgtcacg
     1321 gcctccggcc cgcgagcgcg tcggcgtgtc ggccccgcgg atcgatcgag tcgcgcccct
     1381 gccgggcggc caggtccgcg agcgtctcct tgtcgaggat ctcgaggatc gaatcccgca
     1441 cgtcgatcat cacgtcacga aggctgcagg tcgcctcgtc ggggcacgag cacggttcgt
     1501 agtaccgcag cgacacgcac ggcagcggcg cgagcgcccc gtccagcaac cggacgaccc
     1561 gcccgatcga cacgctcgac ggctgcgcgg cgatcgcgta cccgccgtgg gtgcccagcg
     1621 tcgtccgaac gatgccggcg tgcttgagcg tcgacatgat ctgctcgagg aacttggccg
     1681 ggagccggtt ccgggtggcg agcgtggtca gggggatcgg gccgtcgccg tcgtgccgga
     1741 ccaggtcgac gagggcgcgc aggccgtact cggaacgtcg ggaaaggcgc at
//
LOCUS       DATDDI010000904         2995 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_269363, whole genome shotgun sequence.
ACCESSION   DATDDI010000904 DATDDI010000000
VERSION     DATDDI010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2995
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269363"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..288)
                     /locus_tag="VIU37_13190"
     CDS             complement(1..288)
                     /locus_tag="VIU37_13190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014962.1"
                     /translation="MAIDEEHVAHPRLYGAPAYARPPAAVAPTPLPLDPDDLPIAAAQ
                     TPAEQALAETLIGRPYQSVRPVPRVSQEEPRLEPRPLLLRVLAGRILRRAS"
     gene            complement(511..891)
                     /locus_tag="VIU37_13195"
     CDS             complement(511..891)
                     /locus_tag="VIU37_13195"
                     /inference="COORDINATES: protein motif:HMM:NF024843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CxxC-x17-CxxC domain-containing protein"
                     /protein_id="HEY6014963.1"
                     /translation="MYNDKNLTCADCSQEFVFTASEQDFYSQRGFTEPRRCPSCRASR
                     KAARNSEGGGSGGYSSGGGYSSGGYSSGAGSYGGSSYGERDRGPREMFAATCSSCGKE
                     AQVPFRPTSGKPVYCSDCFRSQRG"
     gene            complement(1066..1581)
                     /locus_tag="VIU37_13200"
     CDS             complement(1066..1581)
                     /locus_tag="VIU37_13200"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY6014964.1"
                     /translation="MRHADIDGLFGYLYWLRDRALDEASRLPAEVFLSPATVAYRDLR
                     STLVHELDVERSWRRRLRGEPREAWDADLAPAGYPDPASILADWRRDEAETRDWLAGL
                     TDEELGAPVTANGLEGFPLSTYLVHVVMHGVESFAAAAILLHRAGPSMGDVGFLDFVD
                     TTAPPPHAPGS"
     gene            1642..2580
                     /locus_tag="VIU37_13205"
     CDS             1642..2580
                     /locus_tag="VIU37_13205"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY6014965.1"
                     /translation="MAAAYRNEPCRTALNRVRNMPFAWSLNPYMGCAHRCTFCFVRAF
                     EKVADRPSDWRYGTSIRVKTNIVEVLRRELGRRSWRRDKVAVGTATDPYQPAEGRFRL
                     TRGVIEALGESRTPFGLITRGPLVVRDVDVLSEAARRAAVGVTFSIPTLDHGVWRRTE
                     PGTAPPRQRLRAIRTLIDAGIDASVGMAPILPGLSDDPAGMAEVVRAARDAGATSIWA
                     NVLYLRPGTREHFLDNLARDWPDLLPRYERLYAHRAYLGNEVVGSVRRRVRDLATAYG
                     VADRRPWKLEPSPEPEIEQLPLTAFLQEPGQASSGA"
     gene            complement(2564..>2995)
                     /gene="trxA"
                     /locus_tag="VIU37_13210"
     CDS             complement(2564..>2995)
                     /gene="trxA"
                     /locus_tag="VIU37_13210"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEY6014966.1"
                     /translation="RPISILRCANCGAANRIAPSPRGAPHCGTCGKPLPWLVNATEAT
                     FEVEVRAAPTVVVDLWAPWCGPCRFVGPILEELSRDWAGRLKVVKVNVDENQGLALRY
                     DARSIPTMLVMRDGQVVDRIVGALPKPTLVARLEPNLKPRN"
BASE COUNT          441 a         1041 c         1065 g          448 t
ORIGIN      
        1 ctacgaggcc cggcgcagga ttcggccggc gaggacccgg agcagcagcg gcctcggttc
       61 gaggcgcggc tcctcctggc tgacccgcgg gaccggtctg accgactggt agggccggcc
      121 gatcagggtc tccgccagtg cctgctcggc cggcgtttgc gcggccgcga tcggcagatc
      181 gtcggggtcg agggggaggg gcgtcggggc gaccgccgcg ggcggccgcg catacgccgg
      241 cgcgccgtag aggcgcggat gggcgacgtg ctcttcgtcg atggccatgg aattcctcgg
      301 gtggtgaggc gccggatacc cggcccgaat agtgcgaggc cggagcgtat cgcgaacggg
      361 tacgaaagtc ccataccgga tggcccgtag acgctacaaa tgtggtgacc ggacgcacac
      421 ccgggaatca agcgacccga gtcgactgac gacccgggtc ggttttcgcg agggcggtcc
      481 ggttggccgg cggccggccg gatgggttga ctagccgcgc tggctccgga agcaatcgct
      541 gcagtagacg ggcttgccgc tggtcggacg gaacgggacc tgggcttcct tgccgcagga
      601 cgagcaggtg gccgcgaaca tctcgcgggg accgcgatct cgctcgccgt agctggagcc
      661 accgtagctg ccggcgccgc tggaatagcc accgctcgag tagccaccac cggagctgta
      721 gccaccggag ccgccgcctt cgctgttgcg agcggccttg cggctggctc ggcaggacgg
      781 gcagcggcgc ggctcggtga agccacgctg ggagtagaag tcctgctccg acgcggtgaa
      841 cacgaattcc tgtgaacagt ccgcgcaggt cagattcttg tcgttgtaca aaagagaaac
      901 tcctctcgac attcggcgcg atcccttcgt cgggttctcg cgtcagtcgt gagaggagtc
      961 cgagttgcgt cgagctgtcg tatgtgccca cggcgtttcc cgtggcgcgg aggccatcat
     1021 acccgggatc gcggttcgcc accacccccc agttcgagca cgatctcagc tccctggagc
     1081 gtggggcggc ggcgcggtcg tgtccacgaa gtccaggaag ccgacgtcgc ccatcgacgg
     1141 cccggcgcgg tgcagcagga tcgccgcggc ggcgaaggat tcgacgccgt gcatcaccac
     1201 gtggaccagg tacgtcgaca gcgggaagcc ctccagccca ttggcggtga cgggagcgcc
     1261 gagctcctcg tcggtcagcc cggcgagcca gtcgcgcgtc tcggcctcgt cgcgacgcca
     1321 gtccgccagg atcgaggccg gatccgggta gccggccggc gccaggtcgg cgtcccaggc
     1381 ctccctcggc tcgccacgca ggcggcggcg ccagcttcgc tcgacatcca gctcgtggac
     1441 cagcgtggag cggaggtccc ggtaggccac cgtggccggc gacaggaaga cctccgccgg
     1501 cagcctggac gcctcgtcca gcgctcgatc gcgcagccag tacaggtacc cgaacagccc
     1561 gtcgatgtcg gcgtgacgca tccgtgcagt ctggcatgcg cggcgccagc ggtactagaa
     1621 cagatgttct atcgttcccg gatggcggca gcctaccgta acgagccctg caggacggcg
     1681 ctcaaccgcg ttcggaacat gccgttcgcc tggtccctga acccgtacat gggctgtgcc
     1741 caccgctgca cgttctgctt cgtccgggcc ttcgagaagg tcgcggaccg gccgtcggac
     1801 tggcgctatg gaacgtcgat ccgcgtcaag accaacatcg tggaggtcct gcggcgggag
     1861 ctcggccgtc gctcctggcg tcgcgacaag gtcgccgtcg ggaccgcgac ggacccgtac
     1921 cagccggccg agggccggtt ccgcctgacc cgcggcgtca tcgaggccct cggggagtcg
     1981 cggacaccgt tcggcctgat cacccgcggc ccgctagtcg tccgcgatgt cgacgtcctg
     2041 tccgaagccg cccgtcgggc tgccgtcggg gtcaccttct cgatcccgac gctcgaccac
     2101 ggggtctggc gccgaacgga gccggggacg gcgccgccgc gccagcgcct gcgcgcgatc
     2161 cgaacgctga tcgacgcggg aatcgacgcg agcgtcggga tggcaccgat cctgccgggg
     2221 ctgtcggacg atcccgccgg catggcggag gtcgttcgcg ctgcccgcga cgccggggcg
     2281 acgtccatct gggccaacgt gctctacctg cgaccgggca ctcgcgagca cttcctcgac
     2341 aacctcgccc gcgactggcc cgacctcctg ccccgctacg agcgcctgta cgcgcatcgc
     2401 gcgtacctcg gcaacgaggt cgtcgggtcg gttcgtcgca gggtccgtga cctggccacg
     2461 gcgtatgggg tggccgatcg ccggccctgg aagctcgagc cgtcgcccga gccggagatc
     2521 gagcaactgc cgctgaccgc gttcctccag gaacctgggc aggctagttc cggggcttga
     2581 ggttcggttc caggcgggcc accagcgtgg gcttcggcag ggcgccgacg atccggtcga
     2641 cgacctgacc gtcgcgcatg accagcatcg tcgggatgct ccgggcgtcg tacctgaggg
     2701 cgagaccctg gttctcgtcg acgttgacct tgacgacctt gagccgtccg gcccagtccc
     2761 gcgacagctc ctcgaggatc ggcccgacga accggcacgg cccgcaccac ggcgcccaca
     2821 ggtcgacgac gacggtcggc gccgcacgaa cctccacctc gaaggtcgcc tcggtcgcgt
     2881 tgacgagcca cggcagcggc ttgccacagg tcccgcagtg cggagcgcct cgcgggcttg
     2941 gtgcgatccg gttggccgcg ccacagttcg cgcagcgcag gatcgagatc ggtcg
//
LOCUS       DATDDI010000905         2894 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_726996, whole genome shotgun sequence.
ACCESSION   DATDDI010000905 DATDDI010000000
VERSION     DATDDI010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_726996"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1555
                     /locus_tag="VIU37_13215"
     CDS             <1..1555
                     /locus_tag="VIU37_13215"
                     /EC_number="2.4.1.266"
                     /inference="COORDINATES: protein motif:HMM:NF010496.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucosyl-3-phosphoglycerate synthase"
                     /protein_id="HEY6014967.1"
                     /translation="REIRRVLVPVRGGPHAELALHYADAIARHHGATVVVLHLVPPGI
                     TLTVRAQAERALATFIKQHLEGRSEAILREAPNVRNAILREAEKADLVVMGASAQPGG
                     TGSESYLFGALPEAIAARAKPSVVVVKTRERIERATFEQLAARAETLAAADRAAEEGR
                     AIPIRVERWFGEANFHHAEFSDLRRLVSLKESQHLTISLVFPTLDEEETIGPIVRRAM
                     RELMGRVPLLDEVLVIDSASTDRTREIAEAEGARVVQHPDVLARYGSFKGKGEALWKS
                     LYETSGDLVVWADTDVRNWHQRMVYGTLGPLLHEPRLQYVKGYYQRPIVEGGILKEGG
                     GGRVTELVARPLINLFYPELSGMIQPLSGEYAGRRSLLESIPFFTGYAVEIGHLIDVT
                     ERLGIEALGQVDLERRVHRNQELEGLSRMSFVIIQAVMRRLEERRKARLFAEMGSTMK
                     LPRSGKGRLSLEVIELADQERPPMIRIPEYVERRRALLGDAAMAGLSASIDGGAPDVR
                     VAARRRRAR"
     gene            1552..2088
                     /locus_tag="VIU37_13220"
     CDS             1552..2088
                     /locus_tag="VIU37_13220"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6014968.1"
                     /translation="MTGATPAVDVRELDVDGYRRAIPELSALIVRAVAHGASINFTAD
                     VTTELAAAWWRARIDAVASGQTTAFVAVGDDRIVGSTLLIRSLNQNSPHRAEIGKVIV
                     DPSVRRRGIARALMQAAEDRARADGRWLLVLDTVTDSPADSLYRSLGWQETGIVPDYA
                     LLPDGRPWPATFFWKRLR"
     gene            2085..>2894
                     /locus_tag="VIU37_13225"
     CDS             2085..>2894
                     /locus_tag="VIU37_13225"
                     /EC_number="2.7.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF014634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEY6014969.1"
                     /translation="MNASGPGSGTAPRTVLFAPDSFKGSLTSVQVARALADGWTRARP
                     NDTCLLCPLADGGEGTLEAIAAAGGWEWRTATVRDPLGRAIQARWLRSVAGDRAVVEM
                     AEASGLSRLAPGERDAVAATSVGTGEAIRAAIDAGATSIVLGIGGSATTDGGAGLLTG
                     LGADADRDQPRADLTGLDPRLAGIDLSVACDVANPLLGPTGAAAVYGPQKGASAADVV
                     ELDRRLAFYADAVEASAECRVRDTPGAGAAGGVGFALLAIAGRFRTFALRPG"
BASE COUNT          392 a         1035 c         1080 g          387 t
ORIGIN      
        1 acgggagatc cgccgcgtgc tcgtcccggt gcgcggcggc ccgcatgccg agctcgcgct
       61 ccactacgcc gacgccatcg cccgccatca cggtgcgacg gtcgtcgtcc tccacctggt
      121 cccgcccggg atcacgctga ccgttcgcgc gcaggcggaa cgggctctcg cgacattcat
      181 caagcaacac ctcgagggcc gcagcgaggc gatcctgcgc gaggccccca acgtccgcaa
      241 cgcgatcctg cgcgaggccg agaaggcgga cctggtggtg atgggcgcgt cggcccagcc
      301 cggcggcacg ggcagcgaga gctacctgtt cggggcgctg ccggaggcga tcgccgcccg
      361 cgcgaagcca tcggtggtgg tggtcaagac gcgcgagcgg atcgagcgcg cgacgttcga
      421 gcaactcgcg gcacgggccg agacgctcgc cgccgccgat cgcgcggccg aggagggacg
      481 cgcgatcccc atccgcgtcg aacgctggtt cggcgaggcc aacttccacc atgccgagtt
      541 cagcgacctg cgccggctgg tcagcctcaa ggagtcgcag cacctcacga tcagcctggt
      601 cttcccgacg ctcgacgagg aggagacgat cggcccgatc gtccgccgcg cgatgcgcga
      661 gctgatgggc cgggttccgc tgctcgacga ggtcctggtc atcgactccg cgtcgacgga
      721 tcggacgcgc gagatcgccg aggccgaggg tgcccgggtc gtccagcacc ccgacgtgct
      781 ggcccgctac ggctccttca agggcaaggg cgaggccctc tggaagtcgc tctacgagac
      841 cagcggcgac ctcgtcgtct gggccgacac ggacgtccgg aactggcacc agcggatggt
      901 ctacgggacg ctcggcccgc tcctccacga gccgcggctg cagtacgtca agggctacta
      961 ccagcgcccg atcgtggagg gcggcatcct caaggaaggc ggcggcgggc gggtcaccga
     1021 gctggtcgca cggcccctga tcaacctctt ctacccggag ctgtccggga tgatccagcc
     1081 gttgtcgggc gagtacgcgg gccggcggtc gctgctcgaa tcgatcccgt tcttcaccgg
     1141 ctacgcggtc gagatcggcc acctcatcga cgtcaccgaa cggctgggga tcgaggccct
     1201 cggccaggtc gacctggagc gccgggtgca ccgcaaccag gagctcgagg gcctgtcgcg
     1261 gatgtcgttc gtgatcatcc aggccgtgat gcgacggctg gaggagcgac ggaaggcgag
     1321 actcttcgcc gagatgggct cgaccatgaa gctgccccgg tcgggcaagg gccgcctgtc
     1381 gctcgaggtg atcgagctgg ccgaccagga acgcccgccg atgatccgga tcccggagta
     1441 cgtggagcga cgccgggccc tgctcggcga cgcggcgatg gccgggctct ccgcatcgat
     1501 cgacgggggc gcgcccgacg ttcgcgtcgc cgcccggcgg cgccgggcgc ggtgaccggg
     1561 gcgaccccgg ccgtcgacgt tcgcgagctc gacgtcgacg gataccggcg ggccatcccg
     1621 gaactttcgg cgctcatcgt ccgggccgtc gcgcacggcg cgagcatcaa cttcacggcg
     1681 gacgtcacga ccgagcttgc cgccgcctgg tggcgggctc ggatcgacgc cgtcgcgagc
     1741 ggccagacga ccgcgttcgt ggccgtcggc gacgaccgga tcgtcgggag cacgctgctg
     1801 atccggtcgc tcaaccagaa ctcgccgcac cgggccgaga tcggcaaggt gatcgtggac
     1861 ccgagcgtcc gccggcgcgg gatcgcgcgg gcgctgatgc aggccgcgga ggatcgggcg
     1921 cgggccgatg ggcgctggct cctcgtgctc gacaccgtca cggactcgcc ggccgattcg
     1981 ctgtaccggt cgctgggctg gcaggagacg gggatcgtcc cggactacgc gctccttccc
     2041 gacgggcgac cctggccggc gaccttcttc tggaagcgac tgcggtgaac gcgtcagggc
     2101 ctggctcagg gaccgcgccg cggaccgtcc tgttcgcgcc cgattcgttc aagggctcgc
     2161 tgacgtccgt gcaggtcgcc cgggcactgg cggatggctg gacccgggcg cgcccgaacg
     2221 acacctgtct cctctgcccg ctggccgacg gcggcgaggg cacgctcgag gccatcgccg
     2281 cggccggcgg ctgggagtgg cggaccgcga cggtgcgcga cccgctcggc cgggccatcc
     2341 aggcgcgctg gctgcggtcg gtcgcaggcg atcgcgcagt ggtcgagatg gccgaggcgt
     2401 caggtctgtc gcgcctggca cccggggagc gcgacgccgt tgcggcgacg tcggtcggaa
     2461 ccggggaggc gatccgggcc gcgatcgacg ccggggcgac ctcgatcgtc ctggggatcg
     2521 gcggcagcgc gacgaccgac ggcggcgcgg gcctcctgac cgggcttggc gccgacgccg
     2581 atcgcgacca gccgagggcg gacctgaccg gcctcgatcc gcgcctcgcc gggatcgacc
     2641 tgtcggtcgc ctgcgacgtg gcgaacccgc tgctcgggcc gaccggcgcc gccgcggtgt
     2701 acgggccgca gaagggcgcc tcggcggccg acgtcgtcga gctcgaccga cggctcgcct
     2761 tctatgccga cgccgtcgaa gcgagcgccg aatgccgggt ccgcgacacg ccgggtgccg
     2821 gggcggccgg cggtgtcggc ttcgccctgc tggcgatcgc cggccggttc cgcacgttcg
     2881 cgctccggcc gggc
//
LOCUS       DATDDI010000906         2232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_227544, whole genome shotgun sequence.
ACCESSION   DATDDI010000906 DATDDI010000000
VERSION     DATDDI010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227544"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..743)
                     /locus_tag="VIU37_13230"
     CDS             complement(<1..743)
                     /locus_tag="VIU37_13230"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6014970.1"
                     /translation="MPAWSDYELIDFGGGARLERFGDRVVDRPHPGALGAREDPAAWQ
                     RADLRFDRDRGWTGPGVGVGAWPFDQAGLRLELRPTDAGQVGLFPEHLGMIGWLRTRI
                     ERRLGATGAPAVLHLFAYTGLATLAMAAAGAEVTHVDASKPTVAWARRNAELSGQADR
                     PNRWIVDDAVAFTEREGRRGRTYAGVVLDPPSYGHGPGARPWRLDDDLPRLLTACAGV
                     LAPGGFLLLTAHTPGFEAGRLAQLLGDHLP"
     gene            978..>2232
                     /locus_tag="VIU37_13235"
     CDS             978..>2232
                     /locus_tag="VIU37_13235"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY6014971.1"
                     /translation="MGLPVAGGGFTGVDVFFVVSGFLITGLLLREHAQTGRIDLGRFY
                     SRRMRRILPAALVTVAVTVLLAAVFLAPLQVPGIAQDGAASALSIGNIRFAVQSTDYF
                     AETDVSPFRHFWSLGVEEQFYLVWPGLLIVALGSLRSRLRVGILMVGLLAASLAFAVW
                     LTDVIEPWAFYSLPSRVWQLALGGLLATMLAGGRQLPRWVAAPIGWAGLGLLAAAFAV
                     IDPASPYPGLWALLPAGGAAALIVAGGRGLGTAQLLGWRPLRFIGRISYSLYLWHWPI
                     LTLPALALGQELSLEVRLGLAAASIAVGAVSWRLIEEPFWHGSLSTFRPRPVLATAVA
                     TAIAVAVLAVGIGEDSLAQVRAAGAEPVAQVGTPSPSTIPARASPSRNAPGTPGTPGP
                     TATPTCTTEPTPAATPTASASASVQP"
BASE COUNT          249 a          850 c          789 g          344 t
ORIGIN      
        1 gggaggtggt cgccgagcag ttgcgccagg cgcccggcct cgaaaccggg cgtgtgtgcc
       61 gtcagcagaa ggaaccctcc tggtgcgagc accccggcac aggcggtcaa cagccgcggc
      121 aggtcgtcgt ccagcctcca cggccgcgcc cccggtccgt gcccgtagct cggcgggtcg
      181 agcacgaccc cggcgtacgt ccggccacgg cgtccctcac gctcggtgaa cgccacggcg
      241 tcgtccacga tccagcggtt cggccggtcc gcctgcccgg acagctcggc gtttcgccgt
      301 gcccaggcca cggtcggctt cgaggcgtcg acgtgggtca cctccgcgcc ggcggcggcc
      361 atcgcgagcg tcgccaggcc ggtgtaggcg aacaggtgca ggaccgccgg tgccccggtc
      421 gcgcccagcc gccgctcgat ccgggtcctg agccagccga tcatgccgag gtgttccggg
      481 aagagcccga cctgccccgc gtcggtcggt cgcagctcga gccgcagacc cgcctggtcg
      541 aacggccacg cgcccacgcc gacgccgggt ccggtccagc ctcgatcccg atcgaaccgc
      601 aggtccgccc gctgccacgc cgccggatcc tcgcgggctc cgagggcgcc cgggtgcggc
      661 cggtcgacga cccggtcgcc gaaccgctcg agccgcgcgc ctccaccaaa atcgatcagc
      721 tcgtagtcgg accaggcggg catcggccaa tgatgacgtc ccggcgatgg gcgtaccctg
      781 ccgcccagag ggcccgaggg atcgaccggc gcatcacgcc ccggtcgacc ggcacgtctc
      841 aacggccttc ccaagcccgc aagaatccga ggttcagctc catttcgagc cgcgacgcat
      901 ctgcgcagtc atccagcttc ctgccgcaca tcgagggtct ccgggggatc gcggtcctcg
      961 ccgtcctgtg gttccacgtg ggcctgccgg tggcgggcgg cgggttcacc ggcgtcgacg
     1021 tcttcttcgt cgtgtcgggg ttcctgatca ccggtctgct cctgcgcgag cacgcccaaa
     1081 ccggccggat cgacctcggc cgcttctact cgcgacggat gcggcggatc ctgccggccg
     1141 ccctcgtgac cgtggccgtc acggtcctgc tcgcggcggt cttcctggcg ccgttgcagg
     1201 ttccggggat cgctcaggac ggggccgcct cggcgctgtc gatcggcaac atccggttcg
     1261 cggtccagtc gaccgactac ttcgccgaga ccgacgtctc gccgttccgc catttctggt
     1321 cgctcggggt ggaggagcag ttctacctgg tctggccggg cctcctgatc gtggcgctcg
     1381 ggtcgctgcg atcgcggctc cgggtcggga tcctgatggt cgggctgctc gccgcgtcgc
     1441 tggcgttcgc cgtctggctg acggacgtca tcgagccgtg ggcgttctac tcgctgccga
     1501 gccgcgtctg gcagctcgcg ctcggcgggc tgctggcgac gatgctggcg ggcggacggc
     1561 agctcccacg gtgggtcgcg gcgccgatcg gctgggccgg gctgggtctc ctcgcggccg
     1621 cgttcgcggt catcgacccg gccagtccct acccgggcct ctgggcgctc ctgccggccg
     1681 gcggcgcggc cgccctgatc gtggcgggcg gacgcgggct gggcacggcg cagttgctcg
     1741 gctggcgacc gctgcggttc atcggccgca tttcctactc gctctacctc tggcactggc
     1801 cgatcctgac gctgccggcg ctcgcgctcg ggcaggagct gtcgctcgag gtgcggctgg
     1861 ggctggccgc ggcatcgatc gccgttgggg ccgtgagctg gcggctgatc gaggaaccgt
     1921 tctggcacgg ttcgctgtcg accttccggc cacggccggt acttgcgacc gcggtcgcca
     1981 ccgcgatcgc cgtggccgtg ctggccgtgg gcatcggcga ggacagcctc gcccaggtcc
     2041 gggcggccgg ggccgagccc gtcgcccagg tcgggacgcc gtcgccctcg acgatcccgg
     2101 ctcgtgcgtc cccatcgcga aacgctcccg ggacgcccgg gacgcccggt cccaccgcga
     2161 cacccacgtg caccaccgag ccgacgccgg cggcgacccc gaccgcctcc gcttccgcgt
     2221 ccgtccagcc at
//
LOCUS       DATDDI010000907         1524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_706412, whole genome shotgun sequence.
ACCESSION   DATDDI010000907 DATDDI010000000
VERSION     DATDDI010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706412"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /gene="rplF"
                     /locus_tag="VIU37_13240"
     CDS             <1..229
                     /gene="rplF"
                     /locus_tag="VIU37_13240"
                     /inference="COORDINATES: protein motif:HMM:NF012567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEY6014972.1"
                     /translation="YSHPIEIDPPEGITFEVENPTRLAVVGIDKELVGQIAARVRSTR
                     KPEPYKGKGVRYAGEYIRRKAGKAGKIGGKK"
     gene            255..617
                     /gene="rplR"
                     /locus_tag="VIU37_13245"
     CDS             255..617
                     /gene="rplR"
                     /locus_tag="VIU37_13245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006784446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEY6014973.1"
                     /translation="MTQLASRGAARRKRHDRIRLHLAGTGSRPRLAVFRSLNHIYAQV
                     IDDASGRTLAAASTTDKELKGSKATKSEEAAVVGRLIAERAKSAGVERVVFDRAGFRY
                     HGRIKSLADAAREAGLDF"
     gene            633..1178
                     /gene="rpsE"
                     /locus_tag="VIU37_13250"
     CDS             633..1178
                     /gene="rpsE"
                     /locus_tag="VIU37_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003328273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEY6014974.1"
                     /translation="MARIDPTKLALEERVVQINRVAKVVKGGRRFSFSAIVVVGDGAG
                     HVGVGLGKAGEVPESIRKGVEDAKKNLIRIPMVGTTIPHEVRTEFSASRVMLKPASQG
                     TGVIAGGSVRAVMEAAGVRDILSKTHGSTNPVNVTRATIEALRSLHSAEELSARRGVK
                     VTSRIAGQPASAPVAEVSGGR"
     gene            1168..>1524
                     /gene="rpmD"
                     /locus_tag="VIU37_13255"
     CDS             1168..>1524
                     /gene="rpmD"
                     /locus_tag="VIU37_13255"
                     /inference="COORDINATES: protein motif:HMM:TIGR01308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEY6014975.1"
                     /translation="MAAKLKVTQVKSTISHIARNRATVRALGLHGIGSTSVVTDNPAT
                     RGMVRQVRFLVSVEEIADEGKRRTGIAEGRRQQHHLDADAPAQMRPDNSPKRINIKYR
                     LAQDAEAHEPLVEQSVF"
BASE COUNT          291 a          520 c          512 g          201 t
ORIGIN      
        1 ctacagccac ccgatcgaga tcgacccgcc ggaggggatc accttcgagg tcgagaaccc
       61 gacccgcctg gcggtcgtcg gcatcgacaa ggagctggtc ggccagatcg cggccagggt
      121 ccgctcgacc cgcaagcccg agccgtacaa gggcaagggc gtgcgctacg ccggcgaata
      181 catccgtcgc aaggccggca aggccggcaa gatcggcggc aagaagtaat cgtgactgac
      241 agggaactga agcgatgaca cagctcgcca gccgcggcgc cgcgcgacgc aagcgccacg
      301 accgaatccg cctgcacctc gccggcacgg gttcacggcc gcgtctcgcc gtgttccgca
      361 gcctcaacca catctacgcg caggtcatcg acgacgcatc cggccggacg ctggccgccg
      421 cttccacgac cgacaaggag ctcaagggct ccaaggcgac caagtcggag gaagcggccg
      481 tcgtcggccg tctcatcgcc gagcgtgcca agtcggccgg cgtcgagcgt gtggtattcg
      541 atcgagccgg gttccggtac cacgggcgga tcaagtcgct cgccgatgcc gcccgcgaag
      601 ccggcctcga cttctgatcg gaaggagcca acgtggcacg gattgaccca accaagctcg
      661 cgctcgagga gcgcgtcgtt cagatcaacc gggtcgccaa ggtcgtcaag ggcggccggc
      721 ggttcagctt cagcgcgatc gtcgtggtcg gcgatggcgc cgggcacgtc ggcgtcggcc
      781 tgggcaaggc cggcgaggtg ccggagtcga tccggaaggg cgtcgaggac gccaagaaga
      841 acctgatccg gatcccgatg gtcgggacca cgatcccgca cgaggtgcgc accgagttca
      901 gcgccagccg ggtcatgctc aagccggcct cccaggggac cggcgtgatc gcgggcggct
      961 ccgtccgagc cgtcatggag gccgccggcg tgcgcgacat cctgtcgaag acgcacgggt
     1021 cgaccaaccc ggtcaacgtg acacgggcca cgatcgaggc cctccggagc ctccattccg
     1081 ccgaagagct cagcgcccgc cgaggcgtca aggtcacgag ccggatcgcc ggccagccgg
     1141 cctcggcgcc cgtcgcggag gtgtccggtg gccgctaagc tcaaggtgac ccaggtcaag
     1201 agcacgatca gtcacatcgc ccgcaatcgg gcgaccgtcc gggcgcttgg gctccacggg
     1261 atcggcagca ccagcgtggt gaccgacaac ccggccaccc gtggcatggt ccgccaggtc
     1321 cggttcctgg tcagcgtcga ggagatcgcg gacgagggca agcgccgcac gggtattgcg
     1381 gaaggcaggc gtcaacagca tcaccttgac gctgacgctc ccgcccagat gcgcccagac
     1441 aattccccaa aaagaataaa tattaaatac cggctggctc aagatgccga ggcccatgag
     1501 cccttggttg agcaatccgt attt
//
LOCUS       DATDDI010000908         3934 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_602205, whole genome shotgun sequence.
ACCESSION   DATDDI010000908 DATDDI010000000
VERSION     DATDDI010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3934
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602205"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VIU37_13260"
     CDS             <1..511
                     /locus_tag="VIU37_13260"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF013398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HEY6014976.1"
                     /translation="PGTADTPRRFVRALFDATDGYEGDPKLLTAFPTECRGGANCELA
                     QVVEGPIPFVGLCEHHVLPFYGRAYVGYVAHDQIIGISKLTRLVRVATRRFGVQERMT
                     HDIADGLESMLGPHGVAVYLEAHHLCTQMRGVREHDPMTRTTAYRGTYVDQPTLRQEF
                     RDISGIGRS"
     gene            508..1422
                     /locus_tag="VIU37_13265"
     CDS             508..1422
                     /locus_tag="VIU37_13265"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY6014977.1"
                     /translation="MTVAGRTVARPVGDDWRIEPLGETAGRPGGAMRGGALPEALARR
                     YDTELEIALRPDGPTIVANFVTTLDGVVAFDTQGRTGGREVSGGFAPDRFLMGLLRAT
                     ADAVLVGAGTVRSGSGHVWSPDHVHPSSAEAFADWRVQLGLAARQPTTVMVSTSGRID
                     PSHPALRRPDVPVLIVTTATGRRHLETSGLPPAVEIAVVEERSGAIDVRGLRDILVGH
                     RLELVVCEGGPTLFGSLVGAGLVDELFLTVAPQIAGRGAGHPRLGLVEGLGYEPGAAP
                     WATLASVGRSGDHLFLRYALTEPPARRG"
     gene            complement(1424..1855)
                     /locus_tag="VIU37_13270"
     CDS             complement(1424..1855)
                     /locus_tag="VIU37_13270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014978.1"
                     /translation="MSDEMLKLVLGGVLLVHGLGHGGALGALLWLRFRPQSSTGDWAA
                     ARSWLLPALPAEAATTLASAFWIAALVGFALAACSFWGIVIPTDAWQFIALGSAVVSM
                     TGVVLFIGTWPAFNTLAAMAVNLAVLVAVVIGWPPHSVFGG"
     gene            complement(1848..2420)
                     /locus_tag="VIU37_13275"
     CDS             complement(1848..2420)
                     /locus_tag="VIU37_13275"
                     /inference="COORDINATES: protein motif:HMM:NF024135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HEY6014979.1"
                     /translation="MRILVAYASQHGATREIAERIAERLRLAGLSVEARPAAHAGDLA
                     EFDAFVIGGAAYIGRWLKDATELVAANAGLLAGRPTWLFSSGPLGTEPVDAEGHDQRE
                     SAQPKEFPGFRESIHPRATRVFFGALDPARLGLRDRAIRALPAGRALLPEGDFRDWSE
                     IEAWADGIAVELAAAAAGNRPDRSTGVERV"
     gene            complement(2476..2937)
                     /locus_tag="VIU37_13280"
     CDS             complement(2476..2937)
                     /locus_tag="VIU37_13280"
                     /inference="COORDINATES: protein motif:HMM:NF012481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HEY6014980.1"
                     /translation="MKVLVVYGSQFGNTERIARAIGAALESRHDVQVVGARDARALAG
                     DVDLLIVGAPTQMFGRRLIVRSFLDGLKRQRFGSLPAAAFDTRMGTPTEKNAAASETI
                     ASRLEAAGCRLVAAPESFLVAGFTGPLVDGEADRAARWAVSLAERVAAGVG"
     gene            3210..3791
                     /locus_tag="VIU37_13285"
     CDS             3210..3791
                     /locus_tag="VIU37_13285"
                     /inference="COORDINATES: protein motif:HMM:NF024135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HEY6014981.1"
                     /translation="MPVLVAYATRHGATQGIAERIAETLRSEGLEAEARPAGSVKSLD
                     GYEAFVIGSAAYMYHWLKDAANLVRRNRQLLRDRPVWLFSSGPIGGPIDAKGRDQRAV
                     SVPKEIGEFAPAVNARDHHVFFGAYEVDRKPVGFAERLAAPFMSRLPAEARDAMPEGD
                     FRDWPEIQGWARGIAHDLRAATASPAVTSGARS"
BASE COUNT          533 a         1466 c         1402 g          533 t
ORIGIN      
        1 tccgggcacc gccgacacgc cccgccggtt cgtgcgggcc ctgttcgacg cgaccgatgg
       61 gtacgagggc gatccgaagc tgctcacggc gttcccgacc gaatgccgcg gtggtgccaa
      121 ctgcgagctg gcgcaggtgg tcgaaggccc gatcccgttc gtcggcctgt gcgagcacca
      181 cgtcctcccg ttctacggtc gggcgtacgt cggctacgtg gcgcacgacc agatcatcgg
      241 gatcagcaag ctgacccggc tcgtccgcgt cgccacccgg cggttcggcg tgcaggagcg
      301 gatgacccac gacatcgccg acgggctgga atcgatgctc ggcccgcacg gcgtggcggt
      361 ctacctcgag gcgcaccacc tgtgcacgca gatgcgcggc gtccgcgagc acgacccgat
      421 gacccggacg accgcctatc gcggcaccta cgtcgaccag ccgacgctcc gccaggagtt
      481 ccgcgacatc agcgggatcg gccgatcgtg accgtcgcgg ggcggaccgt ggcccgtccg
      541 gtgggggacg actggcggat cgagccgctc ggcgagaccg ccggccggcc tggcggcgcc
      601 atgcgtggcg gcgcgcttcc ggaggcgctc gcgcggcggt acgacaccga gctcgagatc
      661 gcgctgcgac ccgatggtcc gacgatcgtc gcgaacttcg tgaccaccct cgacggcgtc
      721 gtcgccttcg acacgcaggg ccggaccggc ggtcgcgagg tcagcggcgg gttcgccccc
      781 gatcgcttcc tgatgggcct gctccgcgca accgccgacg cggtcctggt cggcgccggg
      841 accgtgcgct ccgggtccgg ccacgtctgg tcgccggacc acgtgcatcc gtcatcggcc
      901 gaggcgttcg cggactggcg cgtccagctc ggactggcgg cgcggcagcc gaccaccgtc
      961 atggtcagca cgagcgggcg gatcgacccg tcgcatccgg cacttcgccg gccggacgtg
     1021 ccggtcctga tcgtgacgac cgccaccggc cggcgccacc tcgaaacgag cgggctgcca
     1081 ccggccgtcg agatcgccgt cgtcgaggaa cggtcgggcg cgatcgacgt ccggggactg
     1141 cgcgacatcc tcgtcggcca tcgcctcgag ctggtcgtct gcgagggcgg ccccacgctg
     1201 ttcggcagcc ttgtcggcgc cgggctcgtc gacgagctct tcctcaccgt ggccccgcag
     1261 atcgcgggcc ggggtgccgg ccacccccgc ctcgggctcg tcgaggggct cgggtacgaa
     1321 ccgggtgcgg cgccctgggc gacgctcgcc tccgtgggtc gctccggcga tcacctcttc
     1381 cttcgctatg cgctgacgga gccgcccgct cggcgcggat aggtcagccc ccgaagaccg
     1441 aatggggcgg ccagccgatc accaccgcca cgagcacggc caggttcacc gccatcgcgg
     1501 ccagcgtgtt gaacgcgggc cacgtgccga tgaagaggac gacgccggtc atcgacacga
     1561 cggcggagcc cagcgcgatg aactgccacg cgtcggtcgg gatgacgatt ccccagaacg
     1621 agcaggcggc cagcgcgaac ccgaccagcg cggcgatcca gaacgcgctc gccagcgtcg
     1681 tggcggcttc ggccggcagg gcgggcaaca gccagctccg ggcagccgcc cagtcgcccg
     1741 tgctcgactg cgggcggaac cgcagccaga ggagcgcacc gagcgccccg ccatgaccga
     1801 gcccgtgcac caggagcacg ccgccgagga cgagcttgag catctcgtca gacacgttcg
     1861 actcccgtgc tccggtctgg ccggttaccg gcggccgcgg ccgcgagctc aacggcgatg
     1921 ccgtccgccc aggcctcgat ctcggaccag tcacggaagt cgccttcggg cagcagcgcc
     1981 cgaccggcgg gcagggcgcg gattgcgcgg tctcgcaggc cgagcctggc cgggtccagc
     2041 gcgccgaaga agacccgggt cgcccgcgga tggatcgact cccggaaccc ggggaattcc
     2101 ttcggctggg cggactcgcg ttgatcgtgg ccctccgcat cgaccggctc ggtgccgagc
     2161 ggaccgctgc tgaacagcca tgtgggccgc ccggccagga gacccgcgtt ggcggcgacg
     2221 agctcggtgg cgtccttgag ccatcggccg atgtaggccg cgccgccgat cacgaaggcg
     2281 tcgaactcgg cgaggtcgcc ggcgtgtgcc gcgggccgag cctccacgga gagaccggcc
     2341 agccgcaacc gctccgcgat ccgctcggcg atctcacggg tggcaccgtg ctggctggcg
     2401 taggcgacga ggattctcat gcgcttccct cccatcgaga tcggccgtgc ccgcggtccg
     2461 cggcaccggg tccgctcagc cgaccccggc cgcgacccgc tccgcgaggc tcaccgccca
     2521 gcgcgccgcc cggtccgcct cgccgtcgac cagcggaccg gtgaaccccg cgacgaggaa
     2581 gctctccggg gcggccacga ggcggcaccc ggcggcctcc aggcgcgagg cgatcgtctc
     2641 cgacgccgcg gcgttcttct cggtcggcgt gcccatcctc gtgtcgaatg cggcggccgg
     2701 caggctgccg aatcgctggc gcttcagccc gtcgaggaag gagcggacga tcaggcgccg
     2761 gccgaacatc tgggtcggtg ccccgacgat cagcaggtcg acgtcgcccg ccagcgcgcg
     2821 ggcatccctc gcgccgacca cctggacgtc gtggcgagac tcgagcgcgg cgccgatcgc
     2881 cctggcgatc cgttcggtgt tcccgaactg gctgccgtac acgacgagaa ccttcactcc
     2941 gcgtctcctt cgggccaccc gcgctgccat cgacgccgcc ctgtgcctgc gcgcgggcgg
     3001 cgcgaccgca cggcgaatgc tcggaccatc ggccggttcc gcaccagtgc cgctcggacc
     3061 gtttcccgtt ggttgcggcg ccgtcgctgc ggcgccgtcg ctgcggcgct ccgatcccgc
     3121 gccgtgaccg acggctctac cggcgtcgcc cgtcccgggt gcacgatcgc cggtgaccgt
     3181 agatcgctcg ccgcccgaag gagtccgcca tgcctgtcct cgtcgcgtat gccactcgac
     3241 acggggcgac ccagggcatc gccgaacgga tcgccgagac gctgcggtcg gagggactgg
     3301 aggccgaggc gcgaccggcg gggtcggtca agtcgctcga cggctacgag gcgttcgtga
     3361 tcgggagcgc cgcctacatg taccactggc tcaaggacgc cgcgaacctc gtccgtcgga
     3421 accggcagtt gctccgggat cgtccggtct ggctgttcag cagcggaccg atcggggggc
     3481 cgatcgacgc gaagggccgc gaccagcggg ccgtctccgt ccccaaggag atcggcgagt
     3541 tcgcgcccgc cgtcaacgcc cgcgaccatc acgtgttctt cggggcgtac gaggtcgatc
     3601 gcaagccggt cggcttcgcc gagcgcctgg cggcgccgtt catgtcgcgc ctgccggcgg
     3661 aggccaggga cgccatgccg gagggcgact tccgagattg gcccgagatc cagggctggg
     3721 cacgcgggat cgcccacgat ctgcgcgcgg ccacggcatc gccggccgtt acgtcggggg
     3781 ctcggtcgtg accaccaccg tcgccccgac cgaacgtccg ctgccgtacg ggccgctgat
     3841 gacccggctg ctgcccgaga tccagcgcgg gttccgatac gtgaaccgat atgtcgcggt
     3901 gccgctcctc gaggccgggc tggggccctt gtgc
//
LOCUS       DATDDI010000909         2616 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_123275, whole genome shotgun sequence.
ACCESSION   DATDDI010000909 DATDDI010000000
VERSION     DATDDI010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123275"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..1053
                     /locus_tag="VIU37_13290"
     CDS             106..1053
                     /locus_tag="VIU37_13290"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEY6014982.1"
                     /translation="MVGRSGRSSSLAARRGVLLAFGTAAISGLAIYLNSFGVKLVSDA
                     AVYTTAKNGVAAIVLVALALALGSGREVRSLDVRNRLGLVAIAIIGGSIPFVLFFSGL
                     AVATAPTAAFIQKTMFIWVALMAVPFLGERLGLIQIAALGTLLVGQALVAPPTGMGWG
                     AGETMIAAATILWSIEIVIAKRLLVGISPQLLGAARMGLGLVILVGYLALSGKLGGLG
                     SIGGEAWLWVLVTGGLLAGYVASWFAALKFAPATTVTSVLVVAAVVTGVLTALNKGAA
                     PDPRVIAGYLLIIAGTALVALFTALRPSAAHATPAGADA"
     gene            1025..1807
                     /locus_tag="VIU37_13295"
     CDS             1025..1807
                     /locus_tag="VIU37_13295"
                     /inference="COORDINATES: protein motif:HMM:NF040399.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6390 family protein"
                     /protein_id="HEY6014983.1"
                     /translation="MRPLPAPTPDTSRRPPVSGPILFARYAYGPNRLGLCGPDDAPAL
                     FGEASQGGDEREIRDLALGFEGAYPYLELIARANAIQDPLDRRVVDAYWLGSPLLESV
                     TPNLLGESLRLRFRPKLGQTTWQWLESSAPAGSKPCHAFHVLDVFPKVGLMRSEQVDH
                     VLQTMDSCRIRWGRVLERDGDALIVNAVPLALVEGRLELGAPRRERISGWRDGHGFIG
                     DVGPGDIVSIHWDWACDVLDEDAAGRLIAWTRRELDIANATI"
     gene            1974..2450
                     /locus_tag="VIU37_13300"
     CDS             1974..2450
                     /locus_tag="VIU37_13300"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY6014984.1"
                     /translation="MAGAPGAVWAFSEHEHRELVRGISRIHDIACEIGGWLTPEQSVR
                     VLGILDWLDRELEPHIAWEESWLYPEIDTRTGTPWATRAARFDHVQIRDLANKLRADK
                     HVLQQDRAGSRLAELRCHLFALEALLHAHIDREERFLMPLLADARAEGAGKPASAT"
BASE COUNT          354 a          956 c          898 g          408 t
ORIGIN      
        1 gaagccacgg agatccggac catgctcgat gaggcggcgc gcgccgaggc cgcgctgcga
       61 ggtgtcactc cacccgacgg tggctaagga agagggaagc tgatcatggt tggccgctct
      121 ggacgttcgt cgagtctcgc cgcgcggcga ggcgtcctcc tcgccttcgg gacggccgcg
      181 atcagcggtc tggcgatcta cctcaactcg ttcggcgtga agctcgtgtc ggacgccgcc
      241 gtctacacca cggccaagaa cggcgtcgcc gcgatcgtgc tcgtggcgct cgccctggcg
      301 ctcggttcgg gtcgcgaggt gcgctccctg gacgtccgga accggctcgg cctggtcgcg
      361 atcgcgatca tcggcggcag catcccgttc gtgctcttct tcagcggtct ggccgtcgcc
      421 acggcgccga ccgccgcgtt catccagaag acgatgttca tctgggtcgc cctgatggcc
      481 gtcccgttcc tcggcgagcg gctcgggctc atccagatcg ccgccctcgg gacgctcctc
      541 gtcggccagg cgctggtcgc gccgccgacc gggatgggct ggggtgccgg cgagacgatg
      601 atcgcggcgg ccacgatcct gtggtcgatc gagatcgtca tcgccaagcg gctcctggtc
      661 gggatctcgc cacagctcct cggcgcggcg cggatgggcc tgggcctggt catcctcgtc
      721 ggctacctcg cgctgagcgg caagctcggc gggctcggca gcatcggtgg cgaggcctgg
      781 ctgtgggtcc tggtcacggg cggcctgttg gccggctacg tggcgagctg gttcgccgcg
      841 ctcaagttcg caccggcgac gacggtcacc agcgtgctcg ttgtcgcggc ggtcgtgacc
      901 ggcgtgctca ccgcgctcaa caagggagcg gccccggacc cgcgggtcat cgccggctac
      961 ctgctgatca tcgccggcac ggcgctggtt gcgctcttca ccgcccttcg tcccagcgca
     1021 gcccatgcga cccctgccgg cgccgacgcc tgacaccagc cgccgcccgc cggtcagcgg
     1081 gcccatcctc ttcgcccggt acgcgtacgg gccgaaccgg ctgggcctgt gcggcccgga
     1141 cgatgcgccg gccctgttcg gtgaagccag ccagggcggc gacgagcgcg agatccgcga
     1201 tctcgcgctc gggttcgagg gcgcctatcc gtacctcgag ctgattgccc gggccaacgc
     1261 gatccaggat ccgctcgatc gtcgcgtcgt cgacgcgtac tggctcggca gcccgctgct
     1321 cgaatcggtc acccccaacc tgctgggcga atcgctccgg ctccgcttcc gcccgaagct
     1381 cggccagacg acgtggcagt ggctggaatc gagcgctccg gccggctcca agccgtgcca
     1441 cgcgttccac gtgctcgacg tgttccccaa ggtcgggctc atgcgcagcg aacaggtcga
     1501 ccacgtcctc cagacgatgg attcgtgccg gatccgctgg ggacgcgtcc tggagcggga
     1561 cggcgacgcg ctcatcgtca acgcggtccc gctggcgctc gtcgagggcc ggctcgagct
     1621 cggcgcgcct cgccgcgaac gcatctccgg ctggcgggac ggccatggct tcatcggcga
     1681 cgtcggcccc ggcgacatcg tctcgatcca ctgggactgg gcctgcgacg tgctcgacga
     1741 ggacgccgcc ggccggctca tcgcctggac tcgccgcgag ctggacatcg ccaacgccac
     1801 gatctgaccg ccgctcccca cgccgtgtgg cggctggcgg gaacgggccg gatggcccgc
     1861 gtgatggtga cttccgagtc tgtccccaaa acgcccctcg gaccgatggt tgagatcgta
     1921 ccggcggatg gagtcgtacg gcgatccagc gcgagggacc aacgatggct gacatggcag
     1981 gcgccccggg ggccgtttgg gcattcagcg aacatgaaca tcgtgagctc gtccgaggga
     2041 tcagccggat ccacgacatc gcctgcgaga tcggcggctg gctgaccccg gagcagtcgg
     2101 tccgggtcct cgggatcctc gactggctgg atcgcgagct ggagccgcac atcgcctggg
     2161 aagagtcgtg gctctatccg gagatcgaca cccggaccgg gacgccctgg gcgacccggg
     2221 ccgcccgctt cgaccacgtc cagatccgcg acctggcgaa caagctgcgg gccgacaagc
     2281 acgtcctcca gcaggaccgg gccggcagcc ggctggccga attgcgctgc cacctgttcg
     2341 ctctcgaggc cctgctccat gcccacatcg accgcgagga gcgcttcctg atgcccctgc
     2401 tcgccgacgc gcgagccgag ggcgccggca agcccgcctc cgccacctga cgccgacgga
     2461 acgtgtccca tgagcatgaa cgtgcgtgag ccgctgcccc agcacctgga cccaccggga
     2521 gccgcgagcc tgctcgccaa cctcgggttc atcgcctgct ccgacctgcc cgaccgcccg
     2581 ggcccggcct acctgctcgt ggcgttccgg ccggag
//
LOCUS       DATDDI010000910         3372 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_61217, whole genome shotgun sequence.
ACCESSION   DATDDI010000910 DATDDI010000000
VERSION     DATDDI010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61217"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VIU37_13305"
     CDS             complement(<1..274)
                     /locus_tag="VIU37_13305"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY6014985.1"
                     /translation="MDTVEYFPVPSSLDSMRLPFSEAVRVGDLLYLSGAIGIDATGTL
                     VEGGIEAETRQAMDNIRTVLERHGSSMDRVVKCTAMLADMGEWAAMN"
     gene            403..786
                     /locus_tag="VIU37_13310"
     CDS             403..786
                     /locus_tag="VIU37_13310"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6014986.1"
                     /translation="MGTWPGGISAITLFVEDLDAAREFYGRAFGLPPAFEDANSAVFQ
                     FANTMVNLLKASEAPGLIAPAPVADLAAGCRFQLTIPVDDVDAVAAELRSRGVELLNG
                     PMDRPWGIRTASFRDPGGHVWELAT"
     gene            825..1274
                     /locus_tag="VIU37_13315"
     CDS             825..1274
                     /locus_tag="VIU37_13315"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEY6014987.1"
                     /translation="MPDMLSEAALDLLASPAVATIATINEDGSPHLSAAWVGVEDGEI
                     VFGTLPDQRKLRNLRRDPRISIQVTSERVNRWGLREYLVVDGTARITEGGAAALLQRL
                     AHVYIGPDVVFPAMPEPPPGFVTHVRVERISGIGPWRATTAEGREPA"
     gene            1271..1630
                     /locus_tag="VIU37_13320"
     CDS             1271..1630
                     /locus_tag="VIU37_13320"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY6014988.1"
                     /translation="MNFNSILIGSEDAPRLAAYYTKLFGEPTFSDGGYTGWVIGNGAV
                     TVGPHSEVHGTNGEPGRLIWNIESTEVQADFDRLKAAGASVVREPYSFEGAPGSWVAT
                     LSDPDGNYFQLVSPMMP"
     gene            1699..2631
                     /locus_tag="VIU37_13325"
     CDS             1699..2631
                     /locus_tag="VIU37_13325"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY6014989.1"
                     /translation="MTAPILDAPLLDRTDPSGRRPLPVAILEARRIVRATVDDVLAIP
                     EASLARPWSWIGGSEEEVRYGAYRVHELYERAEVEARRFLAGRERDGGLAADLIAPSG
                     AARWDLHGVLAPLSAPDLDADPGGGEWSIRRTLGHVINGQRAYGWATAWWQAKGYAID
                     DPGLPATAPDEVYAGLPDEDGSEMAGSLDDLRDRLDAILDLSAECLAGLSEDRLAYAT
                     RWSGFAVTVGFRIGRWSSHLREHTIQVEKTLARLGRTPTEPDRLARLVLAAYGRAEAV
                     VYGQPGADAAAAIILAAAVEARDTIAEARAAAEA"
     gene            complement(2659..>3372)
                     /locus_tag="VIU37_13330"
     CDS             complement(2659..>3372)
                     /locus_tag="VIU37_13330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014990.1"
                     /translation="ANVVVLPVPPVPDPAGSSGPPVDLQVEYQVRSADGADPTDAELG
                     DIAHDLRVRLDIGTRPVRVDVERRYRILVTVCHTTDPDGDRRLLLARGALTVVPLPRS
                     EYGTTTAPGPTALPAAGDPIDPALQPLAPASGLGITRPHVDPTTGRRGVAFRLSNQAS
                     AVFRAYATGHLGEFVAVVLDGTILAVLPIEGSTADGNFAFTGDYTEADTHRLAQMLYL
                     DPMEASLTEISHVEIAAGF"
BASE COUNT          480 a         1182 c         1220 g          490 t
ORIGIN      
        1 ggttcattgc cgcccactcc cccatgtcag ccagcatcgc cgtgcatttc accacgcgat
       61 ccatggacga gccgtgtcgc tcgagcacgg tccggatgtt gtccatcgcc tggcgtgtct
      121 ccgcttcgat cccgccctcg accagggtac cggtggcgtc gatgccgatc gcgcccgaga
      181 ggtagagcag gtctccgacc ctgacggcct ccgagaacgg cagccgcatc gagtcgagcg
      241 acgacggcac ggggaagtat tcgacggtgt ccacggtcca ggctcccggg ttgggacctc
      301 gcggcgcgag gtcatggccc gattgtggcc cgaccgatga attccggggg gccgtggcgt
      361 ctccactgcg acacgaaccg cgcatgcacg agggagaggc tgatggggac ctggccgggc
      421 ggaatctccg cgatcacgct gttcgtcgag gacctcgacg ccgcacgtga gttctacggc
      481 cgggcgttcg ggctgccgcc ggcgttcgag gacgccaact cggccgtatt ccagttcgcg
      541 aacacgatgg tcaacctgct caaggcctcg gaggccccgg gactgatcgc ccccgccccc
      601 gtggcggacc tcgccgccgg atgccggttc cagctcacga tcccggtcga cgacgtggac
      661 gcggtcgccg cggagctccg ttcgcgcggc gtcgagctgc tcaacggtcc gatggaccgg
      721 ccgtggggca ttcggaccgc gagcttccgt gacccgggcg ggcatgtctg ggagctcgcg
      781 acatagccgc gggcagccgg caggtgaccg tgtatcgtcc cgacatgccc gacatgctgt
      841 ccgaggccgc gctcgatctc ctggcatccc ccgcggtcgc gaccatcgcc accatcaacg
      901 aggacggttc gccgcacctg agcgcggcct gggtcggggt cgaggacggg gagatcgtgt
      961 tcggtacgct tcccgaccag cgcaagctcc ggaacctgcg acgtgacccg aggatctcga
     1021 tccaggtgac gtccgagcgg gtgaaccggt ggggccttcg cgagtacctc gtcgtcgacg
     1081 gcacggcgcg gatcacggag ggcggggcgg ccgccctgct gcagcggctc gcgcacgtct
     1141 acatcggccc ggacgtggtc ttcccggcca tgcccgagcc cccgcccggc ttcgtgaccc
     1201 atgtgcgcgt ggagcgcatc tccgggatcg gcccgtggcg ggccaccaca gcggaaggaa
     1261 gggaaccggc atgaacttca acagcatcct gatcggttcg gaggacgctc ccaggctggc
     1321 ggcctactac acgaagctgt tcggcgagcc cacgttcagt gacggcggct ataccggctg
     1381 ggtgatcggc aacggtgcgg tcaccgtggg cccgcacagc gaggtccacg gcacgaacgg
     1441 cgagccgggc cggctcatct ggaacatcga gagcaccgag gtccaggcgg acttcgaccg
     1501 cctgaaggcc gccggcgcgt cggtcgtgcg ggagccgtac agcttcgagg gcgcgccggg
     1561 atcctgggtc gcgaccctgt ccgacccgga cggcaactac ttccagctcg tcagcccgat
     1621 gatgccctga cgggatcggg ccgcggcggg ccggcggggc cccggcgacc ggtgccgccg
     1681 ggcgggtaga ctgccccgat gaccgctccc atcctcgacg ctcccctcct cgatcggacg
     1741 gatccgtcgg gccgccggcc cttgcccgtg gcgatcctcg aggcccgccg gatcgtgcgc
     1801 gccaccgtcg acgacgtcct ggcgatcccg gaggcgtcgc tggcgcgccc gtggagctgg
     1861 atcggcggca gcgaggaaga ggtccgctac ggggcgtacc gcgtccacga gctgtacgag
     1921 cgtgccgagg tcgaggcccg ccgcttcctg gccggacgcg aacgggacgg tggactcgcg
     1981 gccgacctga tcgccccgag cggagcggcc cgctgggacc tgcacggcgt gctggctccg
     2041 ctgtccgccc cggatctcga tgccgatccg ggcggcggcg aatggtcgat ccggcggacg
     2101 ctcgggcacg tgatcaacgg ccagcgggcc tacggctggg ccacggcatg gtggcaggcg
     2161 aagggctatg cgatcgacga cccgggcctg ccggccacgg cgcccgacga ggtctacgcc
     2221 ggtctgcccg acgaggacgg ttccgagatg gctggctccc tcgacgacct cagggaccgg
     2281 ctcgatgcga tcctggacct gtccgcggaa tgccttgccg gcctgtccga ggaccggctc
     2341 gcgtatgcca ctcggtggtc ggggttcgcc gtgaccgtcg ggttccggat cggccggtgg
     2401 tcgagccatc tgcgcgagca cacgatccag gtcgagaaga cgctcgcccg gctgggccgg
     2461 acaccgaccg agcccgaccg cctggcccgg ctcgtgctcg ccgcgtacgg ccgtgccgag
     2521 gccgtggtct acggccagcc tggagcggac gcggccgccg cgatcatcct cgcagccgcc
     2581 gtggaagccc gcgacaccat cgccgaggcc cgtgccgccg ccgaagcctg atctcccgat
     2641 cggggcggcg agcggtcgtc agaatcccgc ggcgatctcc acgtggctga tctccgtgag
     2701 ggaggcctcc atcggatcca ggtacagcat ctgggcgagg cggtgggtgt ccgcctccgt
     2761 gtagtcgccc gtgaacgcga agttgccgtc tgccgtgctg ccctcgatcg gaagcaccgc
     2821 caggatcgtg ccgtcgagca cgaccgcgac gaattcgccg aggtgcccgg tcgcgtaggc
     2881 cctgaagacc gctgaggcct ggttggagag cctgaacgcc accccgcggc gtccggtcgt
     2941 cggatcgacg tgcggccgcg tgatcccgag gccggatgcc ggcgccaacg gctggagcgc
     3001 gggatcgatg ggatcgccag cggcgggaag ggccgtgggc cctggcgcgg tggtggttcc
     3061 gtactcgctc ctgggcaggg gtaccacggt gagcgcgccg cgagccagga ggagtcggcg
     3121 atcgccgtcg ggatccgtcg tgtgacagac ggtgaccagg atccggtacc ggcgctcgac
     3181 atcgaccctg accggtcgcg tgccgatatc caggcgcacc cgcaggtcgt gggcgatatc
     3241 ccccagctcg gcgtccgtcg ggtcggcgcc gtcggccgat cgcacctggt actcgacctg
     3301 gagatcgacc ggcggaccgc tggacccggc gggatcgggc actggcggaa ccggcaggac
     3361 cacgacgttc gc
//
LOCUS       DATDDI010000911         2089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_560961, whole genome shotgun sequence.
ACCESSION   DATDDI010000911 DATDDI010000000
VERSION     DATDDI010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560961"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1248
                     /gene="hydA"
                     /locus_tag="VIU37_13335"
     CDS             <1..1248
                     /gene="hydA"
                     /locus_tag="VIU37_13335"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HEY6014991.1"
                     /translation="GKWVIPGGIDPHVHMSLPFGGTVSKDDFETGTRAAAFGGTTTII
                     DFAVQPRGGTLRQGLEAWHAKADGHCSIDYAFHCIVSDMRDDLLPEMDALVDDGVTTF
                     KLFTAYPGVFLSDDAAIFKALRRTAGNGGLILMHAENGPVIDVVAADLVAQGTTDPIG
                     HGLARYSIFEGEATSRVIRLAQAAGAPVYFVHMTAKEALDAVRRARDEGQAVFAETCP
                     QYLFLSLDDLGNGFEGAKFVCSPPLRDAKAGHQEELWKGLVKDDLQAVGTDHCPFDFV
                     GQKELGRGDFRKIPNGLPAVENRLDLIHDGGVASGRISANRWVELVSTAPARLFGLTR
                     KGVVAAGYDADIVVYDPQRRHTISASTHHMNVDYSIYEGREIVGGADVVLSGGRVIVE
                     GEAWLGKPGDGRFVKRERSAFLR"
     gene            1529..>2089
                     /locus_tag="VIU37_13340"
     CDS             1529..>2089
                     /locus_tag="VIU37_13340"
                     /inference="COORDINATES: protein motif:HMM:NF026042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEY6014992.1"
                     /translation="MATLTPAAARAEAERCLYCFDAPCARACPTGIDVPSFIRKIATD
                     NLEGSARTILAANPLGGTCGAACPVERLCEEACVHAALDRPIPIGRLQRYAIESYAAA
                     GRPFFTPGADATIRVAIVGAGPAGLACAAELRRAGIGVTLYDARDRAGGLGDHGIVPW
                     RMPRELVATEVAEVVRAGARLELGAEV"
BASE COUNT          288 a          749 c          751 g          301 t
ORIGIN      
        1 ggcaaatggg tgatcccggg cgggatcgat ccgcacgtcc acatgtcatt gccgttcggc
       61 ggcacggtct cgaaggatga cttcgagacc ggcacccgcg ccgccgcgtt cggcggaacc
      121 accacgatca tcgacttcgc ggtccagccg cgtggtggca cgctgcgtca ggggctggag
      181 gcctggcacg ccaaggccga cggccactgc agcatcgact acgccttcca ctgcatcgtc
      241 tcggacatgc gcgacgacct cctgccggag atggacgcgc tcgtggacga cggtgtcacc
      301 acgttcaagc tgttcaccgc ctatccgggc gtcttcctga gcgacgacgc agccatcttc
      361 aaggcgctcc gccggaccgc cggcaacggc gggctcatcc tcatgcacgc cgagaacgga
      421 ccggtcatcg acgtcgtcgc ggccgacctg gtcgcgcagg ggacgaccga cccgatcggg
      481 cacgggctcg cccggtactc gatcttcgag ggtgaggcga cgagccgggt cattcgcctg
      541 gcccaggcgg ccggggcgcc ggtctacttc gtccacatga ccgccaagga ggcgctcgac
      601 gccgtccgtc gggctcgtga cgaggggcag gccgtcttcg ccgagacctg tccgcagtac
      661 ctgttcctgt cgctcgacga cctgggcaac gggttcgagg gcgccaagtt cgtctgctcg
      721 ccgccgctcc gcgacgcgaa ggccggtcac caggaagagc tctggaaggg cctggtcaag
      781 gacgacctcc aggccgtcgg gaccgaccat tgcccgttcg acttcgtcgg ccagaaggag
      841 ctcggccggg gcgacttccg gaagatcccg aacgggctgc cggcggtcga gaaccgcctc
      901 gacctgatcc acgacggcgg ggtcgcgtcg ggcaggatct cggccaatcg ctgggtcgag
      961 ctggtctcca ccgcgccggc ccgcctgttc gggttgacgc gcaagggcgt cgtggccgcc
     1021 gggtacgacg cggacatcgt cgtctacgac ccgcagcgcc ggcacacgat cagcgcgtcg
     1081 acgcaccaca tgaacgtcga ctactcgatc tacgagggtc gggagatcgt gggcggcgcg
     1141 gacgtcgtgc tctcgggcgg ccgggtcatc gtcgagggcg aggcctggct cgggaagccc
     1201 ggcgacggcc gcttcgtcaa gcgcgaacgg agcgccttcc tacgctgacc ggtggcgttc
     1261 ggtgccgccg gctcggccgg cgccgccggc tcggccggtg ccgccggctc ggccggcgcg
     1321 aggtcggggg cccgtctcgg agcgggccct cgacgcttca cgcacaacgg cacgtccatt
     1381 cgggcccaac ggccgtaggg agccgccgcc ctgagcacgc agcctgagcc tgcgtccagt
     1441 ctgtcgccgt ccgccggcga ccgagcgagg gtcaactgac atgagtctcg acgcgtcggt
     1501 cggacgttcg tccgatccat tccttccatt ggcgacgctg accccggccg ccgcgcgggc
     1561 ggaggcggag cggtgcctgt actgcttcga cgcgccgtgc gcgcgcgcct gtccgaccgg
     1621 catcgacgtc ccgtcgttca tccgcaagat cgccacggac aacctcgagg gcagcgcccg
     1681 gacgatcctg gccgccaacc cgctgggcgg gacctgcggg gcggcctgcc cggtcgagcg
     1741 gctgtgcgag gaagcctgcg tgcacgcggc ccttgatcgg ccgatcccga tcggccggtt
     1801 gcagcgatac gcgatcgagt cgtatgccgc cgccggacgg cccttcttca cgcccggcgc
     1861 cgacgcgacg atccgggtcg ccatcgtcgg ggccggaccg gccgggctgg cctgcgccgc
     1921 ggagctccga cgagcgggga tcggcgtcac cctgtacgac gcccgcgatc gcgccggcgg
     1981 tctcggggac cacgggatcg tgccctggcg catgccgcgc gagctggtgg cgaccgaggt
     2041 ggccgaggtg gtgcgggccg gcgcccggct cgagctcggc gccgaggtc
//
LOCUS       DATDDI010000912         2352 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_664598, whole genome shotgun sequence.
ACCESSION   DATDDI010000912 DATDDI010000000
VERSION     DATDDI010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_664598"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..661
                     /locus_tag="VIU37_13345"
     CDS             <1..661
                     /locus_tag="VIU37_13345"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: protein motif:HMM:NF000942.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEY6014993.1"
                     /translation="RVAALSGPNLAAEVVRNLPTSAVVASPDVELAQRIIARLGRRRF
                     RLYVNEDILGVELCGALKNVVAIAAGAVDALGFGDNGKAGLLTRGLAEMTRLGMAAGA
                     NPLTFAGLAGMGDLIATCGSPLSRNHRLGVELAKGRSWPDIEATLPGTAEGAYTVDAA
                     LALATRHGVELPIAQEVHNALFAGKSVRRCLVDLLARESKDELADYGRWVERFGPQAR
                     P"
     gene            692..768
                     /locus_tag="VIU37_13350"
     tRNA            692..768
                     /locus_tag="VIU37_13350"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:726..728,aa:Pro,seq:ggg)
     gene            841..1209
                     /locus_tag="VIU37_13355"
     CDS             841..1209
                     /locus_tag="VIU37_13355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014994.1"
                     /translation="MGDPKEPTVAEALQAWRSAERVAAVARRGRLAAEEAAAAAKEAA
                     EAANATAEAAKSALASMTLAEISAGKTAAAAKLAALAMNVELADSEAEAAMADVDEAV
                     AQAGYRQAADRASGKAKPRT"
     gene            complement(1265..1447)
                     /locus_tag="VIU37_13360"
     CDS             complement(1265..1447)
                     /locus_tag="VIU37_13360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014995.1"
                     /translation="MHDLTKRINTEIDLAAARRRVRFDVPFSPAWDADMARVEDLERA
                     LWRLEPAEAPREAPAA"
     gene            complement(1569..>2352)
                     /locus_tag="VIU37_13365"
     CDS             complement(1569..>2352)
                     /locus_tag="VIU37_13365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014996.1"
                     /translation="DFLSPKGPGEFLSSLPALWSLLAARATPVVPILGAAGLALLVIR
                     RPAFGLLCWAFVLSGVYIWANYLHLEHYLLVPWLVLGIGLTVGLQGIADALARWGPRV
                     AADHGRAAVGIAAIAFAVGLGAINWSAADRSDDSSGQAYVDAVFAALPRDAAILSYWD
                     ASTPLWHGQLVEGLRPDVLVVDDTNIVYEGWVTRERRIASLVCQRPVFILRLVDADLV
                     PTRQAFRLEPFEAVRVAAGGPSAALQREIYRVEPLDATVCGG"
BASE COUNT          361 a          810 c          888 g          293 t
ORIGIN      
        1 tcgggtggcc gcgctgtccg ggccgaacct cgccgcggag gtcgtgcgca acctgccgac
       61 ctcggccgtg gtcgcgtcgc cggatgtgga gctggcgcag cggatcatcg cccgcctggg
      121 tcggcggcgg ttccggctgt acgtcaacga ggacatcctc ggggtggagc tgtgcggcgc
      181 gctcaagaac gtcgtggcga tcgccgcggg tgccgtggat gcgctcgggt tcggtgacaa
      241 cggcaaggcg ggtctgctga cgcgtggcct ggccgagatg acccggctgg gcatggcggc
      301 cggcgccaat ccgctgacct tcgccgggct ggccgggatg ggcgacctca tcgccacctg
      361 cgggtcgccg ctgtcgcgca accatcggct gggcgtggag ctggcgaagg gccgatcgtg
      421 gccggacatc gaggccacgc tcccgggtac tgccgagggt gcctacacgg tcgacgcggc
      481 gctggcgctc gcgacccggc acggcgtgga gctgccgatc gcccaggagg tccataacgc
      541 gctctttgcc gggaagagcg ttcggcgctg cctcgtggac ctgctcgccc gggaatcgaa
      601 ggacgagctg gccgactacg gccgctgggt cgagcggttc gggccgcagg cacggccgtg
      661 agccaaggcg gtgctagact cggtggcgcg tcggggcgtg gcgcagtctg gtagcgcacc
      721 agtctggggg actggtggtc gtcggttcaa atccggccgc cccgaccaac ctttctccca
      781 acccgtgatg gacctgggcc cggcatcgcg actgcgcgca ccgaagacag ggagacgctc
      841 atgggcgacc caaaggaacc gacggtagcc gaggcgctgc aggcgtggcg cagcgccgaa
      901 cgcgtcgccg ccgtggcgag gcgaggccgg ctggcggccg aagaggctgc cgccgcggcg
      961 aaggaggcgg ccgaggccgc aaacgcgacg gccgaggcgg cgaagagcgc cctcgcgtcg
     1021 atgaccctcg ccgagatctc cgccggcaag acggcagccg cggcgaagct cgcggccctc
     1081 gccatgaacg tcgaactcgc ggattccgag gcagaggcgg ccatggcaga tgtcgacgag
     1141 gcggtcgctc aagccgggta ccgccaggcg gccgaccggg catcgggcaa ggcgaaaccg
     1201 aggacgtagg cggtcgctca ttcggaacgg accggccgcg gcggtcggcg acggccgcgc
     1261 atcgtcaggc ggcgggggcc tcgcgtggcg cctcggcagg ctcgagtcgc cacagggctc
     1321 gctcgaggtc ctcgacccgg gccatgtcgg cgtcccaggc aggactgaat ggaacgtcga
     1381 aacggactcg ccggcgcgcg gcggcaaggt cgatctcggt gttgatgcgc ttcgtgaggt
     1441 cgtgcatagg cgaacggtcg tccaatggct acgtgtacgg gtaacgcgcc cccggggtcg
     1501 cctgttaggc cgtacctttg ccgatcgccc gcgcggagga cgtcccgggc cggccggcgg
     1561 ggacctcgct agccgccgca gaccgtcgcg tcaagcggct ccactcgata gatctcgcgt
     1621 tgcagcgcgg ccgacgggcc gccggccgcg acccggaccg cctcgaacgg ctcaagtcgg
     1681 aacgcctgcc gggtcgggac cagatccgca tcgacgagcc gcaggatgaa gaccgggcgt
     1741 tggcagacga gcgaggcgat ccgccgttcg cgggtgaccc aaccctcgta cacgatgttc
     1801 gtgtcgtcca cgaccagcac gtcgggccgc agcccttcca cgagctgccc gtgccagagc
     1861 ggcgtcgagg cgtcccagta ggacaggatc gcggcgtccc gcgggagcgc ggcgaacacg
     1921 gcgtcgacgt acgcctggcc ggagctgtcg tcgctccggt ccgcggccga ccagttgatc
     1981 gcccccaggc cgacggcgaa cgcgatcgcg gcgatcccca ccgccgcccg gccatggtcc
     2041 gccgcgaccc gggggcccca gcgagccagc gcgtcggcga tcccctgtaa gcccacggtc
     2101 agcccgatcc cgaggaccag ccacgggacc aggaggtagt gctcgagatg caggtaattg
     2161 gcccagatgt agaccccgct cagcacgaac gcccagcaca gcagcccgaa cgccggccgg
     2221 cggatgacga gcagggcgag cccggcggca cccaggatcg gcaccactgg cgtggctcgt
     2281 gcggcgagca gcgaccagag cgccggcagc gacgacagga actcgcccgg gcccttgggc
     2341 gacaggaagt cg
//
LOCUS       DATDDI010000913         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_102844, whole genome shotgun sequence.
ACCESSION   DATDDI010000913 DATDDI010000000
VERSION     DATDDI010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102844"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VIU37_13370"
     CDS             complement(<1..285)
                     /locus_tag="VIU37_13370"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY6014997.1"
                     /translation="MTFRRPDRDPERPVYVISVAASILSVHPRTLRIYEEEGLVCPAR
                     TPTNIRLYSENDVRRIMWIRHLTQNLGVNLAGVRILFELEERLGTRILERL"
     gene            complement(302..808)
                     /locus_tag="VIU37_13375"
     CDS             complement(302..808)
                     /locus_tag="VIU37_13375"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY6014998.1"
                     /translation="MTIVRRPSRFGELMTLRSAVDRLFDEDFFRPVRWATTAFDGPTL
                     PLDVTTDADALTIEAALPGIKPEDVEITVEDGTLTISGTTAEARTGDEGSYLVQEIRR
                     GTFSRSITLPNGLEPDKAEATFEHGVLKLRIPKAEQLKPRQIKISPVTDANGHRTSDQ
                     PAEIGAKG"
     gene            1109..1309
                     /locus_tag="VIU37_13380"
     CDS             1109..1309
                     /locus_tag="VIU37_13380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6014999.1"
                     /translation="MSGPVIVNNPDGNNNGALLIGIVLVVIILIAGWWFLFAGGRGGG
                     SGDNGGGSGTQAVPTIAVPQGT"
BASE COUNT          213 a          539 c          530 g          265 t
ORIGIN      
        1 caggcgctcc aggatccggg ttccgagtcg ctcctcgagc tcgaagagga tccggacccc
       61 ggcgaggttc acgccgaggt tctgggtgag gtggcggatc cacatgatcc gccgcacgtc
      121 gttctcggag tagagccgga tgttcgtcgg cgtccgggcc gggcacacga gcccctcctc
      181 ctcgtagatc cgcagggtgc gcggatggac gctgaggatg ctggccgcca cgctgatcac
      241 gtagacgggc cgctcggggt ctcggtccgg acgccggaag gtcatcgctc gctcgactcc
      301 atcagccctt ggcgccgatc tcggcgggct ggtcggacgt tcggtggcca ttggcgtcgg
      361 tcacgggcga gatcttgatc tggcgaggct tcagctgctc cgccttcggg atccgaagct
      421 tgagcacgcc gtgctcgaag gtcgcctcgg ccttgtccgg ctcgaggccg ttcggcaggg
      481 tgatcgagcg gctgaacgtg ccgcgccgga tctcctggac gaggtagctg ccctcgtcac
      541 cggtccgggc ctccgcggtc gtcccggaga tcgtcagggt cccgtcctcg acggtgatct
      601 cgacgtcctc gggcttgatc cccggcaggg ccgcctcgat cgtcagggcg tccgcgtcgg
      661 tcgtgacgtc cagcggcagc gtcgggccgt cgaacgcggt cgtggcccag cggacgggcc
      721 ggaagaagtc ctcgtcgaac aggcgatcca ccgcgctgcg cagcgtcatg agctccccga
      781 agcgcgacgg acggcgcacg atcgtcatct cgtgctacct ccttggtgtc tctcgtcgcc
      841 gggcggtgca tgcccgcgcg accgttcctt ccgatccatc cgatcggagc ccggacgtct
      901 cgaccggaca tcccgaatgc tagaaacctg acagtaccgt tgtcaagagt tctggctgtt
      961 tggatttcgc aatcggcggg cgaggtgctg gccggtcagc ccccggacgg cacgcggctg
     1021 tgacgccgcg atgccattca tgcggcttgg ccgtgaccgc cgcccggcga ggatgccgct
     1081 cgcccaaccc gaagcctgag gtggtcgcgt gagcggaccc gtcatcgtca acaacccgga
     1141 cggcaacaac aacggcgcgc tcctgatcgg catcgtcctc gtggtcatca tcctgatcgc
     1201 cggctggtgg ttcctgttcg caggtggccg gggcggcggc tccggcgaca acggcggcgg
     1261 ctccggcacc caggccgtcc cgacgatcgc cgttccccag ggcacctagt cgcgcgcgag
     1321 cgcccgaaca ctccacccgc cccgcctgcg cgccccaggc ggggcatctc gattccccac
     1381 ggggccggcc ggggcgcaag ccctcgatcc cgttggccat gagttgagcc acccatggct
     1441 cactcgtcgg ctgacgagcg aaggccatgg ctgatgaggc cgcacatcgt ccgctcgggc
     1501 gatggttgct ccgacaccgg cgcattcgtc ggctgagttg ggtcagc
//
LOCUS       DATDDI010000914         3280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_227782, whole genome shotgun sequence.
ACCESSION   DATDDI010000914 DATDDI010000000
VERSION     DATDDI010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227782"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..1236)
                     /locus_tag="VIU37_13385"
     CDS             complement(13..1236)
                     /locus_tag="VIU37_13385"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEY6015000.1"
                     /translation="MADQDRDAFMARLARTKVNRRSFLAAAGLIGGGAALAACTGSTG
                     GTQAPASSEPSAAPSTEASAAESAAPTAAASYAIEDELWMLNWSGYVDPGNMESFKAE
                     YGVKNFQYDIFANNEELLAKLAGGATGYDMSCPTAEFIPQMAEQGYIQKLDFSRIPNF
                     QYIDKAVLSQKWDPNNEYHVPKDFGTTGILYRSKIVKEPITSWKEFYDLSTGKYSGKV
                     VLVDSLGDVLAMPLKMLGFSINTIDQGELAQAQKLLTDLAPHILALDSDTYQDKLASE
                     EAVLCLGWTGPLLALRQDPKTADTKYVVPSEGTLFWLDTWVMMADAPHPNATYAWFDY
                     VERPAIQAKETEYTGYGTPNLEAKKLLSPDLLNDPSIFPPEDVMKNLEGADPTVTDNA
                     DRIAVWTAFKSSIGG"
     gene            complement(1282..2505)
                     /locus_tag="VIU37_13390"
     CDS             complement(1282..2505)
                     /locus_tag="VIU37_13390"
                     /inference="COORDINATES: protein motif:HMM:TIGR01187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6015001.1"
                     /translation="MTTSLTPDATTASLAGAVGARAVGAGAAATAAADGTTPDVEIVD
                     VTKRFGAVTAVDRMRLSISRGEFYSLLGPSGCGKTTTLRMIAGFEQPTEGEIFLDGKP
                     IAGIPPYRRNVNTVFQHYALFPHMDVARNVGYGLRQRKVGKDEEARRVGEALALVRLA
                     GYERRRTWEMSGGQQQRVALARALVNHPTVLLLDEPLGALDLKLRKEMQLELKALQRE
                     VGITFVYVTHDQEEALTMSDVIVVMRDGRIQQQGDPTELYERPTNRFVADFLGSSNFI
                     AATVEGVDASSRTATVRSERGLVLRGTVTDPAAAVAAGDPVTVATRPERLEVRPDDGT
                     APVAAPGWTELAGRIHQGTYLGDHSEYRVVTDQAGELIVRRQNTVGAGSALGGGPGDP
                     VVVRWHETANLILVG"
     gene            2710..3264
                     /locus_tag="VIU37_13395"
     CDS             2710..3264
                     /locus_tag="VIU37_13395"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY6015002.1"
                     /translation="MTRDLQLGARIRTLRQARRLTLRDVSERAGVTESFLSQVEREVT
                     SPSIATVQRIARALDLSIAQLFADEPESGRVVRREARRRIAYPGLKAVDEFLTSNMAG
                     RLQVILSTIEPGGGTGDEPYTHDSDEEVVIVLEGSLDLWVGAEHYRLEAGDALTHSSR
                     IPHRNTNPGPGIARVLFCSTPPSY"
BASE COUNT          453 a         1140 c         1145 g          542 t
ORIGIN      
        1 ctcgtccggc gatcagccgc cgatgctcga cttgaacgcc gtccagaccg cgatccggtc
       61 ggcgttgtcg gtgaccgtcg ggtcggcgcc ctcgaggttc ttcatcacgt cctcgggcgg
      121 gaagatcgac ggatcgttga ggaggtccgg cgaaagcagc ttcttggcct caaggttcgg
      181 cgtgccgtag cccgtgtact cggtctcctt ggcctggatg gccggacgct cgacgtagtc
      241 gaaccaggcg tacgtcgcgt tgggatgcgg ggcgtcggcc atcatcaccc aggtgtcgag
      301 ccagaacagc gtgccctcgc tcgggacgac gtacttggtg tcggcagtct tggggtcctg
      361 gcggagcgcc agcagggggc ccgtccagcc gaggcagagg acggcttcct cggacgccag
      421 cttgtcctgg tacgtgtccg agtcgagggc gaggatgtgc ggcgcaaggt cggtcagcag
      481 cttctgcgcc tgtgccagct cgccctggtc gatcgtgttg atcgagaagc cgagcatctt
      541 gagcggcatc gcgagcacgt cacccaggga gtcgacgagc accaccttgc cgctgtactt
      601 gccggtcgac aggtcgtaga actccttcca cgacgtgatc ggctccttga cgatcttgga
      661 gcggtacagg atcccggtcg tcccgaagtc cttgggcacg tggtactcgt tgttgggatc
      721 ccacttctgg ctcaggaccg ccttgtcgat gtactggaag ttggggatcc ggctgaagtc
      781 cagtttctgg atgtagccct gctccgccat ctgcgggatg aactcggccg tcgggcacga
      841 catgtcgtag ccggtggctc cgccggcgag cttggcgagc agctcctcgt tgttggcgaa
      901 gatgtcgtac tggaagttct tgaccccgta ctcggccttg aacgactcca tgttgcccgg
      961 gtcgacgtag ccggaccagt tgagcatcca gagctcatcc tcgatggcgt acgaggccgc
     1021 cgcggtcggg gcggcgctct cggccgcgct cgcctcggtc gacggtgccg cgctcggttc
     1081 cgagctcgcc ggcgcttggg tgccgcccgt gctcccggtg caggccgcca gcgccgcgcc
     1141 gcccccgatc agcccggccg ccgcgaggaa gctgcgccga ttgaccttgg tccgggccag
     1201 cctggccatg aatgcgtcgc ggtcctgatc agccaccagt gctcctcctc cacgtcgtgg
     1261 cgacgacgcc tgccggcccc ctcatccaac gaggatgagg ttggccgttt cgtgccaccg
     1321 aacgaccacg gggtcgcccg gccctccccc gagggcgctg cccgcgccca ccgtgttctg
     1381 gcgccggacg atcagctcgc cggcctggtc ggtcaccacc cggtactccg agtggtcgcc
     1441 gagataggtc ccctgatgga tgcggccggc gagctccgtc cagccgggcg ccgcgaccgg
     1501 cgcggtgccg tcgtccggac ggacctcgag ccgttccggg cgggtggcga cggtgacggg
     1561 gtcgccggcg gcgacggcgg ccgcagggtc ggtgaccgta ccgcgcagga ccagccctcg
     1621 ctcgctccgt accgtcgcgg tgcggctgga cgcgtcgacg ccctcgaccg tcgccgcgat
     1681 gaagttcgag ctgccgagga agtcggccac gaaccggttg gtcgggcgct cgtagagctc
     1741 ggtcgggtcg ccctgctgct ggatccgccc gtcacgcatg acgacgatca cgtcgctcat
     1801 cgtcagcgcc tcctcctggt cgtgggtcac gtacacgaag gtgatcccga cctcgcgctg
     1861 cagggccttg agctcgagct gcatctcctt gcgcagcttc aggtcgaggg cgcccagcgg
     1921 ctcgtcgagg aggaggacgg tgggatggtt caccagggcc cgcgccagcg cgacccgctg
     1981 ctgctggcca cccgacatct cccacgtccg gcgccgctcg tagcccgcca ggcggaccag
     2041 ggcgagggcc tcgccgacac ggcgcgcctc ctcgtccttg cccaccttgc gctggcgcag
     2101 gccgtagccg acgttgcgag ccacgtccat gtgcgggaac agcgcgtagt gctggaagac
     2161 ggtgttcacg ttccggcgat agggcgggat gccggcgatc ggcttgccgt cgaggaagat
     2221 ctcgccctcg gtcggctgct cgaagccggc gatcatccgc agcgtcgtcg tcttgccgca
     2281 gcccgacggc cccaggaggc tgtagaactc gccccgcgag atcgacaggc gcatccgatc
     2341 gaccgcggtg accgccccga accgcttcgt gacgtccacg atctcgacgt caggcgtggt
     2401 cccgtcggcg gcagccgtcg cggcggcacc ggcgccgacc gcgcgcgccc ccacggcgcc
     2461 ggccaacgaa gcagtcgtgg cgtccggggt cagggaggtg gtcaacggcg gcctcgaggt
     2521 gcggcttcgg ggcgctggga cgatggaccc ctgtagcggc gctacaggat cgctgcatgg
     2581 tacgggcgag gacggcgagc gtcaacgcgg aagtgctgcg agattcgtgc caccagggtg
     2641 cattccggta tcgatctcgc gccggactgt acctatactt cagtccgtga acccatcgcg
     2701 ccggatgcca tgacccgcga cctgcagctc ggcgcccgga tccggacgtt gcggcaggcg
     2761 cgccggctga cgctgcgcga tgtgtccgag cgtgccggcg tcaccgagag cttcctgtcg
     2821 caggtcgaac gcgaggtcac cagcccgtcg atcgccacgg tccagcggat cgcgcgggcg
     2881 ctcgacctgt cgatcgccca gctgttcgcc gacgagcccg agtccggacg cgtggtccgg
     2941 cgcgaggccc gccggcggat cgcctacccc ggcctcaagg cggtcgacga gttcctgacc
     3001 tcgaacatgg ccggccggct ccaggtgatc ctgtccacga tcgagcccgg tggcgggacc
     3061 ggcgacgagc cgtacaccca cgactcggac gaggaggtcg tgatcgtgct cgagggctcg
     3121 ctggacctgt gggtgggcgc ggagcactac cggctcgagg ccggcgacgc gctgacgcac
     3181 tcgtcccgga tcccgcaccg gaacaccaat cccggcccgg ggatcgcccg cgtcctgttc
     3241 tgcagcacgc cgccctcgta ctagggtcgc ccggcgccga
//
LOCUS       DATDDI010000915         1556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_394426, whole genome shotgun sequence.
ACCESSION   DATDDI010000915 DATDDI010000000
VERSION     DATDDI010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394426"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="VIU37_13400"
     CDS             <1..585
                     /locus_tag="VIU37_13400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015003.1"
                     /translation="GGPAASSTSQPSVAQVASPSAGPTATPTVALPTVALQSGTVTTF
                     EGFRDAYCASWLSIFKAVGNPDTGGGSDLSHALDAAVTAGDVAAANQAAAAMKAELEA
                     GRRQAQAGAGWLPAAPFMAELDRFLAAFESGTEAERAAAGPSGVDGRAIWQAAFQAAG
                     GIEAWQAMPPRAGPIASARPPDSHYQCPGIPVSL"
     gene            complement(587..1210)
                     /locus_tag="VIU37_13405"
     CDS             complement(587..1210)
                     /locus_tag="VIU37_13405"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEY6015004.1"
                     /translation="MATFDERAAEWDTPERIARAADVADALVGAVDIRAGTRAIELGA
                     GTGLLGLAIRDRVGPDRLAGLLLTDPSTGMLEVAAAKIRDRGLAGVATARYELGTDPP
                     PAGAPFDLAVSVLMLHHVEDTAAALRSVRELLVPGGRLALADLDTEDGSFHTAEAEGI
                     HHHGFDRHLLQALAERAGFREVEIGSAGSMERDGRTYPLFLLTATAA"
     gene            complement(1216..>1556)
                     /locus_tag="VIU37_13410"
     CDS             complement(1216..>1556)
                     /locus_tag="VIU37_13410"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY6015005.1"
                     /translation="LAEDGETHRPEREPLLSPAELRRRWEAEWAGMDAFLVSIDEAWL
                     ARDDEGVPFAGMLLHLANHDTQHRSEAAVLLTQAGRSPGELDLITWLEERAGWRDGVP
                     PSQQTPAPDR"
BASE COUNT          191 a          586 c          589 g          190 t
ORIGIN      
        1 ggcggcccgg ccgcgtcatc gacgagccag ccgtcggtcg cccaggtggc ctcgccatcg
       61 gccggtccca ccgcgacgcc gacggtcgcc ctcccgacgg tcgcgctcca gagtggcacg
      121 gtgaccacgt tcgagggctt ccgggacgcc tactgcgcga gctggctgtc gatcttcaag
      181 gcggtcggca atcccgatac cggcggtgga tcggacttgt cgcacgcgct cgacgccgcg
      241 gtcacggcgg gcgacgtcgc ggcggcgaac caggcggcgg ctgccatgaa ggccgagctg
      301 gaggccgggc gacggcaggc gcaggccggc gccggctggc tccccgcggc gccgttcatg
      361 gccgagctcg accggttcct cgcggcgttc gagtccggca cggaggccga gcgcgccgcg
      421 gccggtccct ccggcgtcga cgggcgggcg atctggcagg cggcgttcca ggccgccggc
      481 ggcatcgagg cgtggcaggc catgccgccg agggcaggcc cgatcgcctc cgccaggccc
      541 ccggactccc actaccagtg cccggggatc ccggtctccc tctaggtcag gccgccgtcg
      601 cggtgagcag gaacagcggg taggtccggc cgtcgcgctc catcgagccc gccgacccga
      661 tctcgacctc gcggaagccc gcccgctcgg cgagcgcctg gaggagatgc cgatcgaagc
      721 cgtggtgatg gatcccctcg gcctccgccg tgtggaacga accgtcctcg gtatcgaggt
      781 cggccagcgc cagccggcca cccggcacga gcagctcccg gaccgaccga agcgcggccg
      841 ccgtgtcctc gacgtggtgg agcatcagga ccgagacggc caggtcgaac ggcgcgccgg
      901 ccggcggggg gtccgtgccg agctcgtacc gggccgtcgc gaccccggcc aggccgcgat
      961 cgcggatctt ggccgcggcg acctcgagca tcccggtcga gggatccgtc aggagcaggc
     1021 ctgccaggcg gtcaggcccg actcgatccc gaatggccag gccgagcagg ccggtcccgg
     1081 cgccgagctc gatcgcccgc gtgccggcgc ggatgtcgac cgcgccgacg agcgcgtcgg
     1141 cgacgtccgc cgcccgggcg atccgctccg gcgtgtccca ctcggcggcg cgttcgtcga
     1201 acgtcgccat gccgatcagc ggtccggtgc cggcgtctgc tgcgagggcg gcacgccgtc
     1261 acgccagccg gcccgctcct cgagccaggt gatgaggtcg agctcgcccg gcgagcgccc
     1321 ggcctgggtc agcaggacgg cggcctcgga gcggtgctgg gtgtcgtggt tcgcgaggtg
     1381 caggagcatc ccggcgaacg gcacgccctc gtcgtcgcgg gccagccagg cctcgtcgat
     1441 cgagaccagg aaggcgtcca tgccggccca ctcggcctcc cagcgccgcc gcagctcggc
     1501 cggggagagg agcggctcgc gctcgggtcg gtgtgtctcg ccgtcctcgg ccaggc
//
LOCUS       DATDDI010000916         2422 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_207099, whole genome shotgun sequence.
ACCESSION   DATDDI010000916 DATDDI010000000
VERSION     DATDDI010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207099"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2084)
                     /locus_tag="VIU37_13415"
     CDS             complement(<1..2084)
                     /locus_tag="VIU37_13415"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: protein motif:HMM:NF004531.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEY6015006.1"
                     /translation="MSYVFDCDQRPDLPFPEVKRLLGGKAANLAVMAGDLGLPVPPAF
                     TISTAACVEYLAHGWPDGLDAELREHMARIERRVGESFGGPGTPLLVSVRSGAPVSMP
                     GMMDTILNLGLTSQTTDGLAASSGSEKFARNCEKRFTAMFRDVVGVQDVPDDAWTQLR
                     LAIEAVFRSWNSDRARTYRAREGIADDLGTAVTVQAMVFGNRSVDSGTGVLFTRNPAT
                     GEPVPYGDVMFNAQGEDVVAGTHRTEPIAILDERMPEIGRELRDYATRLERHHRDLCD
                     IEFTIEHGKLWMLQCRVGKRSPQAALRIALDMAEDPDFPLTREEAVRRVLGILPNPPK
                     VATERDRGARAVATGLPASPGLASGEIATSPESAVAAADAGRAVLLVRAETSPDDVHG
                     MARSVGILTSSGGLASHAAVVARGWGIPAVVGAAGVAVGDGIVTMGGRTFLAGDTITI
                     DGGSGEVFAGAVAGASVVVPEAATLLAWAAELGIPVGEGAAAGGAEPASVTDEPPSGV
                     SADELLRTLVVKGYATPEMAAAALLATPDDVSAVLDRLVADGLVELSAGAFRLTADGK
                     AIGRERMAADAARAGDGTAERALDEFLTLDGRMKETVTAWQMRTVDGTQTFNDHSDAA
                     YDAGVLADLDALHQGAAAWARPLESALPQLALYRKRLDRAIAAAMAGDHRYVASPRVD
                     SYHGVWFELHEEL"
     gene            complement(2146..>2422)
                     /locus_tag="VIU37_13420"
     CDS             complement(2146..>2422)
                     /locus_tag="VIU37_13420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015007.1"
                     /translation="AMLRRGGRCAAVGIPTETTELALQKLVLDELELVGSRASAGEMR
                     RVMPLVEQGRMRVREVMTHRFALADYADALATFNDPASGAIKIIVAP"
BASE COUNT          315 a          893 c          885 g          329 t
ORIGIN      
        1 agctcctcgt ggagctcgaa ccagacgccg tggtaactgt ccacgcgcgg cgaggccacg
       61 tagcggtggt ccccggccat ggcggcggcg atggcgcggt ccagccgctt ccggtacagg
      121 gccagctgcg ggagcgcgct ctcgagcggg cgcgcccagg ccgcggcgcc ttggtgcagg
      181 gcgtcgagat ccgccaggac gcccgcgtcg taggcggcgt ccgaatggtc gttgaacgtc
      241 tgggtcccgt cgaccgtccg catctgccac gcggtgacgg tctccttcat ccggccgtcg
      301 agcgtcagga actcgtcgag cgcgcgctcg gccgtcccgt cgcccgcgcg tgcggcatcg
      361 gccgccatcc gctcgcggcc gatcgccttg ccgtcggcgg tcaggcggaa ggcgccggcc
      421 gacagctcga ccaggccgtc ggcgacgagc cggtccagga cggcgctgac gtcgtcgggc
      481 gtggcgagca gcgccgccgc cgccatctcg ggcgtcgcgt agcccttcac cacgagcgtc
      541 cggaggagct cgtcggcact gacgccggag ggcggttcgt ccgtcacgga ggcgggttcg
      601 gcgccgcccg ccgcggcacc ctcgcccacc gggatcccta actccgccgc ccaggccagg
      661 agcgtggcgg cctcggggac gacgacgctc gcgccggcga ccgcgccggc gaacacttcg
      721 ccgctgccgc cgtcgatggt gatggtgtcg ccggcgagga acgtccggcc gcccatcgtg
      781 acgatgccgt cgccgacggc gacgccggcg gcgccgacga ccgcggggat cccccagccg
      841 cgggccacga cggcggcgtg actggcgagg ccgccactcg aggtgaggat cccgaccgat
      901 cgcgccatcc cgtggacgtc gtccggtgag gtctccgcgc ggaccaggag caccgcccgc
      961 ccggcgtcgg cggcggccac cgccgactcg ggtgaggtgg cgatctcgcc cgacgccaga
     1021 cccggtgacg ccgggagccc cgtcgccacc gcccgggccc cacgatcccg ctcggtcgcg
     1081 accttgggcg ggttcggcag gatacccagc acccggcgga cggcctcctc ccgcgtcagg
     1141 gggaagtccg gatcctcggc catgtcgagc gcgatccgga gcgccgcctg cgggctgcgc
     1201 ttcccgaccc ggcactggag catccagagc ttcccgtgct cgatggtgaa ctcgatgtcg
     1261 cacaggtcgc ggtgatggcg ctccagccgc gtggcgtagt cgcgcagctc tcggccgatc
     1321 tcgggcatcc gctcgtcgag gatggcgatg ggctcggtcc ggtgcgtgcc ggccacgacg
     1381 tcctcgccct gggcgttgaa catgacgtcg ccgtacggga cgggctcgcc ggtggcggga
     1441 ttgcgggtga acaggacccc ggtccccgag tcgacgctgc ggttcccgaa gaccatcgcc
     1501 tggacggtca cggccgtgcc gagatcgtcg gcgatcccct cgcgcgcccg atacgtccgc
     1561 gcgcggtcgc tgttccacga gcgaaagacg gcctcgatcg cgaggcggag ctgcgtccat
     1621 gcgtcatcgg gcacgtcctg gacgccgacg acgtcgcgga acatcgccgt gaagcgcttc
     1681 tcgcagttcc gggcgaactt ctcgctcccc gacgaggccg ccagcccgtc ggtcgtctgg
     1741 ctcgtcaggc ccaggttcag gatcgtgtcc atcatcccgg gcatggagac gggggcgccc
     1801 gagcggacgc tgacgaggag cggcgtcccc ggaccgccga acgactcccc gacccggcgc
     1861 tcgatccgcg ccatgtgctc gcgcagctcg gcatcgagac cgtccggcca gccgtgcgcc
     1921 aggtactcga cgcaggcggc cgtcgagatc gtgaacgcgg gcggtaccgg gaggccgagg
     1981 tcgccggcca tgacggccag gttcgcggcc ttgccgccca ggagtcgctt gacctcgggg
     2041 aagggcaggt cggggcgctg atcgcaatcg aagacgtagc tcacgtgtcg gtgttctccc
     2101 ggacgcgcaa cccgaccggt cgccggcggg gcgatcggtc gcgactcacg gcgcgacgat
     2161 gatcttgatg gccccgctgg ccgggtcgtt gaacgtggcc agggcgtcgg cgtagtcggc
     2221 cagggcgaag cgatgggtca tcacctcgcg gacccgcatc cggccctgct cgacgagcgg
     2281 catgactcgc cgcatctcgc cggccgaggc cctcgatccg accagctcga gctcgtcgag
     2341 gaccagcttc tgcagggcaa gctcggtcgt ctccgtcggg atgccgaccg cggcgcagcg
     2401 accgccgcgc cgcagcatgg cc
//
LOCUS       DATDDI010000917         4044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_19859, whole genome shotgun sequence.
ACCESSION   DATDDI010000917 DATDDI010000000
VERSION     DATDDI010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19859"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VIU37_13425"
     CDS             complement(<1..745)
                     /locus_tag="VIU37_13425"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEY6015008.1"
                     /translation="MNKLTIRDADVADKRVFVRVDFNVPLADGKVTDDSRIRGALPTI
                     NALLQSGARVILASHLGRPDGKVQDGLRLRPVGERLGQLLHRNVPVTGDALGVGTEDA
                     IKRLRPGEVLLLENLRFHAEEEKNDPAFAATLASYADIYVNDAFGTAHRAHASTVGIA
                     KLLPAYAGLLMERELEMLSKLQEAPERPFAAILGGAKVSDKLKVIDHLLTKVDLLVLG
                     GGMANTFLLAQGKAIGKSLAEPDRVEDARR"
     gene            complement(752..1771)
                     /gene="gap"
                     /locus_tag="VIU37_13430"
     CDS             complement(752..1771)
                     /gene="gap"
                     /locus_tag="VIU37_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011897301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEY6015009.1"
                     /translation="MATRVGINGFGRIGRQSLKALIERAPDIEVVAVNDLVDAEMNAL
                     LFKRDSTYGTYPGDVKAGDGSIIIDGREIKCLAETDPAALPWKDLGVDIVLESTGRFT
                     TAEKARAHLDAGAKKVIISAPAKQEDITIVLGVNEANYDPAVHHIISNASCTTNCLAP
                     AAKVVHDLVTIERGLMNTIHSYTNDQRILDVAHKDPRRARSAGQNIIPTTTGAAKALA
                     LVIPDLKGKFDGFSLRVPTPTVSVVDFTAIVSKPTSVEELNDAFRAAAAGPMQGILGV
                     SDEPLVSMDFKGDSRSSIIDGASTMVMGGTLVKVIAWYDNEWGYSCRVADLIAYVAAR
                     LPVAV"
     gene            complement(2057..2197)
                     /locus_tag="VIU37_13435"
     CDS             complement(2057..2197)
                     /locus_tag="VIU37_13435"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HEY6015010.1"
                     /translation="MAEAYCVKDKKKVEVQNAQKITMKNGKPALQGTCPLCGGKVFRI
                     GG"
     gene            complement(2265..3137)
                     /locus_tag="VIU37_13440"
     CDS             complement(2265..3137)
                     /locus_tag="VIU37_13440"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEY6015011.1"
                     /translation="MPNADPRVETLSDRRIAIPAGERQYHIGLGPGELAEYILLPGDP
                     DRTARIASRFESIELEHRHREFASVTGRYRGRRMSVVSTGIGTDNVEIVVAEILAITE
                     RPTFIRVGSCGALQPEMSLGDLAITSGAVRLESTTSFFVHDGYPAVADYEAVVALIEA
                     AERLGHRYHVGVTATAPGFFGAQGRPIPQLPIRYPDLAEEMARQRVMNFEMEASALLV
                     LATLARCRAGVVCAVYASRTTGDFVTGELKDMAEAACVETGLEGLLVLADMDEQKREA
                     GTDRWRPSLWNHKV"
     gene            complement(3213..>4044)
                     /locus_tag="VIU37_13445"
     CDS             complement(3213..>4044)
                     /locus_tag="VIU37_13445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015012.1"
                     /translation="RVGDRRERPGRGRVATIVGIVRRPFPTATDRRFAILPRSASDIR
                     VEGGPIARQTAHGAGPAGAGGDATVGGDTTPLGPGAGTTATSNPPDADLVDLASLVGR
                     VVRVGGLVADLRPDGVLLDDGSTIGRVVLRGAALDLLPLLEPDDAINAIGRVEAVEDG
                     PAVVVEDPAGISQAGDPQAPDPAAPAGLVAAPTVPGGSATEAGLAGASPFGVGAVGFA
                     TLCALSAASLAVTLSRRWYRRRRLAARIAARLAGLETPPPSLAAPRSAERGGSTIHSA
                     "
BASE COUNT          578 a         1389 c         1448 g          629 t
ORIGIN      
        1 tccggcgcgc gtcctcgacg cggtcgggct cggccaggct cttgccgatc gccttgccct
       61 gcgcgagcag gaacgtgttg gccatgcccc cgcccaggac gagcaggtcg accttggtca
      121 gcaggtgatc gatgaccttg agcttgtcgg acaccttggc gccgccgagg atggccgcga
      181 agggccgttc gggcgcctcc tgcagcttcg acagcatctc gagctcgcgc tccatcagga
      241 gacccgcgta ggccggcagg agcttggcga ttccgaccgt cgaggcgtga gcccgatgcg
      301 ccgtcccgaa cgcgtcgttg acgtagatgt cggcatacga ggcgagcgtc gccgcgaacg
      361 ccgggtcgtt cttctcctct tccgcgtgga agcggaggtt ctcgagcagg agcacctcgc
      421 cagggcggag gcgcttgatg gcgtcctccg tcccgacgcc gagggcgtcg ccggtgaccg
      481 ggacgttgcg gtgcagcagc tggccgagcc gctcgccgac cggccgcagc cgaaggccgt
      541 cctggacctt gccgtcgggt cgtcccaggt ggctggccag gatgaccctg gccccggact
      601 gcaggagcgc gttgatggtg gggagggcgc cgcggatccg cgagtcgtca gtgaccttgc
      661 cgtcggccag cgggacgttg aagtcgacgc gcacgaacac ccgcttgtcc gcgacgtcgg
      721 cgtcgcggat ggtgagcttg ttcatggcgg ttcagacggc gacgggcagg cgggccgcca
      781 cgtacgcgat caggtcggcg acgcggcagc tgtagcccca ctcgttgtca taccaggcga
      841 tcaccttgac cagcgtgccg cccatgacca tggtcgacgc cccgtcgatg atcgagctgc
      901 ggctgtcgcc cttgaagtcc atcgacacga gcggctcgtc ggaaacgccc aggatgccct
      961 gcatcgggcc ggcagcggcg gcgcggaagg cgtcgttcag ctcctcgacc gaggtgggct
     1021 tgctgacgat cgcggtgaag tcgacgacgc tgaccgtggg ggtcgggacg cgcaggctga
     1081 agccgtcgaa cttgcccttc aggtcgggga tgacgagcgc gagcgccttg gccgcgccgg
     1141 tcgtggtcgg gatgatgttc tggccggccg accgcgcgcg ccgcgggtcc ttgtgggcaa
     1201 cgtcgaggat gcgctggtcg ttggtgtagc tgtggatggt gttcatcagg ccgcgctcga
     1261 tggtcacgag gtcgtggacc accttggccg ccggcgcgag gcagttggtc gtgcagctgg
     1321 cgttgctgat gatgtggtgg acggccgggt cgtagttcgc ctcgttgacg ccgaggacga
     1381 tcgtgatgtc ctcctgcttc gccggggcgc tgatgatgac cttcttggca ccggcgtcga
     1441 ggtgggccct ggccttctcc gcggtggtga accggcccgt gctctcgagg acgatgtcga
     1501 cgcccaggtc cttccagggc agcgccgccg gatcggtctc ggccaggcac ttgatctcgc
     1561 ggccgtcgat gatgatcgag ccgtcgcccg ccttgacgtc acccgggtag gtgccgtacg
     1621 tcgagtcgcg cttgaacagg agcgcgttca tctccgcatc gaccaggtcg ttgacggcga
     1681 cgacctcgat gtccggcgcg cgctcgatga gcgccttgag cgactgacga ccaatccggc
     1741 cgaagccgtt gatgccaacg cgggtggcca tggtgcagga cctcctggag cggctaggcg
     1801 cccggccctc ggcgcgagcg cgtgaagcga cgtgttcagg cgcatcccaa atccgtgccc
     1861 gagggcacag tcgggggcga ctgcacggag cctcgggggc acgtctcagg ggtgcgtggc
     1921 cattctagca aagccgattc ggcccacctc aggcgagacg gcccgaagcg cccgggccat
     1981 ccggcccgga accgggcgga catggaagga cccccgccga tcggcggggg tcccgaatcg
     2041 cgtttggacg agcgggtcag ccgccgattc ggaagacctt gccgccgcac agcgggcagg
     2101 tcccctgaag ggccggcttg ccgttcttca tcgtgatctt ctgggcgttc tggacttcga
     2161 ccttcttctt gtccttgacg caataggctt cggccacggg gctcctcctc atcctcttga
     2221 tgcgtcacgg gaacccacgt cccgcgtccg ctcagctgtg gtgatcagac cttgtggttc
     2281 cagagcgacg gccgccagcg gtccgtcccg gcttcgcgtt tctgttcatc catgtcggcg
     2341 agcacgagga ggccttccag cccggtctcg acacacgccg cctcggccat gtccttgagc
     2401 tccccggtca cgaaatcgcc ggtcgtgcgg ctagcgtaga ccgcacagac gactccggca
     2461 cggcaccgag cgagggttgc gaggacgagg agcgcggacg cctccatctc gaagttcatg
     2521 acgcgctggc gcgccatctc ctccgcgagg tcagggtagc ggatgggcaa ctgcgggatg
     2581 ggacgccctt gcgccccgaa gaaccccgga gccgtcgccg tgaccccaac gtgatatcga
     2641 tgcccgagcc gctccgcggc ctcgatgagc gccacgaccg cctcgtaatc ggcgaccgcg
     2701 gggtacccat cgtggacgaa gaagctcgtg gtcgattcga ggcgaaccgc cccgctggtg
     2761 atggccaggt cgcccaggct catctccggc tggagcgccc cgcaggaccc gacccggatg
     2821 aaggtcggcc gctcggtgat cgccaggatc tcggccacca cgatctcgac gttgtccgtg
     2881 ccgatgccgg tcgagacgac cgacatccga cggccccgat accgcccggt gaccgaggcg
     2941 aactcgcgat ggcggtgctc gagctcgatg gattcgaagc gcgaggcgat ccgtgcggtt
     3001 cgatcgggat caccggggag gaggatgtac tcggccagtt cgcctggacc gagcccgatg
     3061 tggtactgcc gttcgccggc tgggatcgca attcggcgat ccgagagggt ttcgacgcgg
     3121 ggatccgcgt tcggcaagac ccatccctcg ctcaggtggc tgcttcgctg gcgcgaaact
     3181 cgggcgagga tagcccggcg ttctcgcgag cgtcaagctg agtggatcgt gctgccgcca
     3241 cgctcagccg agcgtggcgc cgcgagcgac ggcggcggcg tctccagccc ggccagtcgc
     3301 gcggcgatcc tggccgcgag tcgccggcgc cggtaccacc gccgggacag cgtgacggcc
     3361 agggaggccg ccgacagggc gcacagcgtc gcgaacccga ccgccccgac gccgaacggc
     3421 gaggcacccg ccaggccggc ctcggtggcc gatccgcccg gcaccgtcgg tgcggcgacg
     3481 agccctgccg gcgccgccgg atccggagcc tgggggtcac cggcctggct gatcccggcc
     3541 ggatcctcca cgaccacggc tggcccgtcc tcaacggcct cgacccggcc gatcgcgttg
     3601 atcgcgtcgt ccggctcgag cagcgggagg aggtcgaggg cggcgccccg gaggacgacg
     3661 cgaccgatcg tcgagccgtc gtcgagcagc acgccgtcag gacggaggtc cgccaccagg
     3721 ccgccgaccc gcaccacgcg accgaccagg cttgccaggt cgacgagatc ggcgtcgggc
     3781 gggttcgagg tcgcggtcgt cccggcaccg ggcccgagcg gggtcgtgtc gccgccgacc
     3841 gtggcgtccc cgcctgcgcc ggccgggccg gcaccatgcg ccgtctgccg ggcgatcgga
     3901 ccgccctcga cgcggatgtc gctcgccgac cgcggcagga tcgcgaaacg ccgatcggtg
     3961 gccgtcggga acggccggcg cacgatcccc acgatcgtcg ccacgcgacc tcgaccaggg
     4021 cgctcgcggc gatccccgac ccgg
//
LOCUS       DATDDI010000918         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_61480, whole genome shotgun sequence.
ACCESSION   DATDDI010000918 DATDDI010000000
VERSION     DATDDI010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61480"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..505)
                     /locus_tag="VIU37_13450"
     CDS             complement(<1..505)
                     /locus_tag="VIU37_13450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015013.1"
                     /translation="MTDDQPDLVRRLLGEDAPDDAHETTAGPERRITPAAGTGEGPRI
                     EVEPDDPDYVPQPAAGRRASPEPPSRLRRFAPSVWPWPAATPQAQARNVAVVALAVLG
                     AFAGLFLAWYHLTTDPLADVRPYFDAAVRLNHGQPLYPSATGLKVAPAYALPPLLAVA
                     LRPVALLG"
     gene            complement(502..1371)
                     /locus_tag="VIU37_13455"
     CDS             complement(502..1371)
                     /locus_tag="VIU37_13455"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HEY6015014.1"
                     /translation="MRSSTSGLVPAAVRIARDGGIVVGLLFLVYLFAVIAPLTRTVGF
                     DAMSYWDYTMADPYRLTHGSLGSFVYSPVVARLFAPFSALPWFTFLWLWLASLLATAL
                     WLGGRRWWLVVLAFPPVALELYHGNVHLLIAASIALGFRYPATWAFVLLTKVTPGVGL
                     VWFVVRREWRSLAIALGVTGALVAVSLVVDGGLWQQWLDKELLVSLRQPPDQPQIAIP
                     LLVRLPLAAALVAWGGLTNRRWTVPMSAAIALPVLWIAGFSILAAIPAIYRAELEPRT
                     AATPSHAPAAAPA"
     gene            complement(1368..>1587)
                     /locus_tag="VIU37_13460"
     CDS             complement(1368..>1587)
                     /locus_tag="VIU37_13460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015015.1"
                     /translation="TGPPAGGPSVPIPLVIRAIPAVAIVVWGARTDRRWTVPVAAALA
                     MPVLWYDGFAVLAAIAAVNRPELRERHP"
BASE COUNT          260 a          551 c          618 g          158 t
ORIGIN      
        1 agccgagcag ggccaccggg cgcagcgcga cggccaggag cggtgggagg gcgtacgcgg
       61 gcgcgacctt caggccggtg gcggacgggt agagcggctg cccgtggttc agccggaccg
      121 ccgcatcgaa gtacgggcga acgtcggcca gcgggtcggt cgtcaggtga taccaggcga
      181 ggaagaggcc ggcgaatgcc ccgaggaccg cgagcgcgac gaccgcgacg ttgcgggcct
      241 gggcctgcgg cgtcgcggca ggccacggcc agacggacgg ggcgaaccgt cgcaggcgac
      301 tcggcggctc cgggctcgct cgtcgaccgg ccgcgggctg cgggacgtag tccgggtcgt
      361 ccggctcgac ctcgatgcgc ggcccctcgc cggtcccggc ggccggcgtg atcctccttt
      421 ccggcccagc ggtggtctcg tgggcatcat cgggggcgtc ctcgccgagg agcctccgaa
      481 cgaggtccgg ctggtcgtcg gtcatgcggg ggccgcggca ggcgcgtggc tgggtgtcgc
      541 cgcggttcga ggttccaact ccgcgcggta gatcgccggg atcgccgcga ggatcgagaa
      601 gccggcgatc cagaggacgg gcagggcgat cgcggccgac atcggaaccg tccagcggcg
      661 gttcgtgagc ccgccccagg cgaccagcgc cgcggcgagc ggcaggcgca cgagcaacgg
      721 gatcgcgatc tgcggctggt ccggcggctg gcggagcgag acgagcagct ccttgtccag
      781 ccactgctgc cacaggccgc catcgacgac gagcgagacg gcgacgagcg ccccggtgac
      841 gcccagcgcg atggcgagcg accgccactc ccgccggacg acgaaccaca ccagcccgac
      901 gccgggcgtg accttcgtca ggagcacgaa cgcccaggtc gccgggtagc ggaatccgag
      961 cgcgatcgac gcggcgatga gcaggtggac gttgccgtgg tacagctcga gcgccaccgg
     1021 cgggaaggcc agcactacca gccaccagcg ccggccgccc agccacagcg ccgtcgcgag
     1081 caggctcgcg agccacagcc acaggaacgt gaaccacggc agcgccgaga acggcgcgaa
     1141 cagccgggcg acgacgggcg agtagacgaa cgacccgagg ctgccgtggg tgaggcgata
     1201 cgggtcggcc atcgtgtagt cccagtacga catcgcgtcg aagccgaccg tccgggttag
     1261 aggcgcgatg acggcaaaca ggtagacgag gaagagcaac ccgaccacga tcccgccatc
     1321 gcgcgcgatc cggacggcgg ccgggaccag gcccgacgtc gacgacctca cggatgacgc
     1381 tcccggagct cggggcggtt gacggccgcg atcgccgcga gcacggcgaa gccgtcgtac
     1441 cagaggaccg gcatcgccag cgccgcggcg acgggcacgg tccagcggcg gtcggttcgc
     1501 gcgccccaga cgacgatcgc gaccgcgggg atcgcccgga tcacgagcgg gatgggcacg
     1561 ctcgggccgc cggccggcgg acccgtc
//
LOCUS       DATDDI010000919         3689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_373719, whole genome shotgun sequence.
ACCESSION   DATDDI010000919 DATDDI010000000
VERSION     DATDDI010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3689
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373719"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..821
                     /locus_tag="VIU37_13465"
     CDS             123..821
                     /locus_tag="VIU37_13465"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6015016.1"
                     /translation="MSGTPVLELVDVVKRYPGNPPVEVLRGVSLEIGAGELVAIAGPS
                     GSGKSTLLHIIGTLDRPTSGTVRVTGHDVTGLSDRQVSGLRARRIGFVFQQFYLLDGM
                     TALDNVANGLLYLGVAIDRRRAAATEALERVGLGHRLRHLPSQLSGGEQQRVAIARAL
                     IARPAIVLADEPTGNLDSASGASILALLHELNTEDGTTIAVITHDHDVAAGLPRQVAI
                     RDGRIVHDSRELAA"
     gene            818..2074
                     /locus_tag="VIU37_13470"
     CDS             818..2074
                     /locus_tag="VIU37_13470"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6015017.1"
                     /translation="MSAVAGVELGLPRIPEPGPVEDGIRPSRVLPADLLRLGLVGPRS
                     RRLRTALTAVGIAIGVAAMVGVLGISESSRAGLLAQLDRFGTNLLTVQAGNSMFGDSS
                     TLPLEARSMIGRIGPVEATAATASVDATARRTDRISVQQTQGIAVVAATTDLLATVQG
                     TVADGAFLNDATARYPAIVLGSVAAERLGITSVDPAVQVFIGGQWFTVVGILDPVFLA
                     PELDSSALMGFPVAQSLFGNDASAGTIYVRSNPDQVVDVWSVLSATANPEHPDQVQVS
                     RPSDVIEAKAAASNAFTLLFLGLAAVALGVAAIGIANVMLMSVLERRAEIGLRRSIGA
                     TRPHIALQFLVEALVLGGAGGLLGVAIGAGIAAGFAQLQGWLIVIPPVAVGGGLAAAL
                     LIGALAGLYPAIRAARISPTEALRSV"
     gene            2101..2559
                     /locus_tag="VIU37_13475"
     CDS             2101..2559
                     /locus_tag="VIU37_13475"
                     /inference="COORDINATES: protein motif:HMM:NF004051.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HEY6015018.1"
                     /translation="MRVAFAADHAGAALKDELIRRLRASGLEHEWIDLGGDGSDPQDD
                     YPDFAQRLGDAVADGAADRGILICGSGVGASVAANKIRGVRSAICHDTYSAHQGVEHD
                     DMNVLTLGSRVIGPEPAFECAVAFLNATFSGEPRHRRRLGKVLAIEADGR"
     gene            2691..>3689
                     /locus_tag="VIU37_13480"
     CDS             2691..>3689
                     /locus_tag="VIU37_13480"
                     /inference="COORDINATES: protein motif:HMM:NF012562.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015019.1"
                     /translation="MSDPASTTANVPRFALGDGIAAFEAAVQRARSEEWANRLFDRDV
                     RLWSNDPRVGAAIADRLGWLDAPAHFANQIAALEGFGDAVVDQGYTTAIVAGMGGSSL
                     APDVLHRTFGSQEGYLALRILDSTDPEYVAATFDDLDPLQTLVIVASKSGTTTEPNAF
                     LAEAWARAQAALDVRKHHTYEQPGGFIVAISDPGRSIDAIPHHDAFREVFLNPPNIGG
                     RYSALTYVGLVPASLIGLDLDALLAAGSAMLGACREPEPTANPGLSLGLAIGTLARSG
                     RDKLTFLTDAAISSFGAWVEQLIAESTGKHGVGIVPVDLEPLGAVDTYGPDRAFVRI"
BASE COUNT          485 a         1369 c         1298 g          537 t
ORIGIN      
        1 gtggaggtcg tgaacggcgc gaccaccgcc tacgtcggtg tccagctcgg gctgttcgcc
       61 aacggctggg tcgagatcag tggcgacggc atcgatgccg gccagagcgt ggtggtgccc
      121 ggatgagcgg cacgcccgtc ctcgagctcg tcgacgtcgt caagcggtac ccgggcaacc
      181 cgccggtgga ggtcctgcgc ggtgtctccc tggagatcgg cgcgggcgag ctggtcgcca
      241 tcgccgggcc gtccggcagc ggcaaatcca ccctgctgca catcatcggg acgctggacc
      301 ggccgacgtc cggcacggtc cgggtgaccg gccacgacgt caccggcctg tccgaccggc
      361 aggtctcggg cctgcgggcg cggcggatcg ggttcgtctt ccagcagttc tacctgctcg
      421 acggcatgac cgccctcgac aacgtcgcga acgggctcct ctaccttggc gtcgcgatcg
      481 accgccgccg cgccgcggcg accgaggcgc tcgagcgggt cggcctcggc catcggttgc
      541 ggcacctccc gtcacagctg tcgggcggcg agcaacagcg cgtcgccatc gcccgcgccc
      601 tgatcgcccg ccccgcgatc gtgctcgccg acgaaccgac gggcaacctc gacagcgcct
      661 cgggcgcgag catcctggcg ctcctccacg agctgaacac cgaggacggc acgacgatcg
      721 cggtgatcac ccacgaccac gacgtggccg ccggactgcc gcgccaggtc gcgatccggg
      781 acggccggat cgtccacgac agccgcgagc tcgccgcatg agcgcggttg ccggcgtgga
      841 gctcgggctc ccgcggatcc ccgaacccgg gccggtcgag gacggcatca ggccgagccg
      901 ggtgctcccg gccgacctgt tgcggctcgg gctggtcggc ccccggtcgc gccgcctccg
      961 cacggccctg accgccgtcg ggatcgcgat cggcgtggcg gccatggtcg gcgtcctcgg
     1021 catctcggag tcgagccggg ccggcctgct cgcccagctc gatcggttcg ggacgaacct
     1081 gctcacggtc caggccggca actccatgtt cggcgacagc tcgaccctgc cgctcgaggc
     1141 acgctcgatg atcgggcgga tcgggccggt ggaggcgacc gccgccaccg cgtccgtgga
     1201 cgccacggcg cggcggaccg accggatctc cgtccagcag acgcagggga tcgccgtggt
     1261 cgcggccacg accgacctgc tcgcgaccgt ccagggcacg gtcgccgacg gcgccttcct
     1321 caacgacgcg accgcccgat acccggcgat cgtgctcggg tccgtggcgg cggagcggct
     1381 cggcatcacg tcggtcgacc cggccgtcca ggtcttcatc ggcgggcagt ggttcaccgt
     1441 ggtcgggatc ctcgacccgg tcttcctggc gccggagctc gactcgtcgg cgctgatggg
     1501 cttcccggtc gcccagtcgc tgttcggcaa cgacgcgtcg gcggggacga tctacgtccg
     1561 cagcaacccc gaccaggtcg tggacgtgtg gagcgtcctg tcggcgaccg cgaaccccga
     1621 acaccccgac caggtccagg tcagccggcc gagtgacgtg atcgaggcga aggccgcggc
     1681 atcgaacgcc ttcacgctgc tgttcctggg cctcgctgcc gtggccctcg gcgtggcggc
     1741 catcgggatc gcgaacgtga tgctgatgtc cgtgctggag cggcgggccg agatcgggct
     1801 ccgccgttcg atcggcgcga cccggccgca catcgcgctc cagttcctgg tcgaggcgct
     1861 cgtcctcggt ggcgccggcg ggttgttggg ggtcgccatc ggcgcgggca tcgccgcggg
     1921 cttcgcccag ctccagggct ggctcatcgt gatcccgccg gtcgcggtcg gtggcggtct
     1981 ggccgcggcg ctgctgatcg gcgcgctggc cggcctgtac ccggcgatcc gggcggcccg
     2041 catctcgccg accgaggcgc tccgctcggt gtgacgccgt atccttgcgc cgtgaccagc
     2101 atgcgagtcg cgttcgccgc cgaccacgcc ggcgcggcgc tcaaggacga gctgatccgg
     2161 cggctgcggg cctccggcct cgagcacgag tggatcgacc tcggcgggga cggttcggat
     2221 ccgcaggacg actacccgga cttcgcccag cggctcggcg atgccgtcgc cgacggcgcg
     2281 gccgaccggg ggatcctcat ctgcgggtcg ggtgtcgggg cctcggtggc ggccaacaag
     2341 atccgcggcg tccgctcggc gatctgccat gacacctatt cggcccacca gggcgtcgag
     2401 catgacgaca tgaacgtcct gaccctgggc agccgggtca tcggccccga gccggccttc
     2461 gaatgcgcgg ttgcgttcct caacgcgacg ttcagcgggg agccgcgcca tcggcgccgg
     2521 ctcggcaagg tgctcgcaat cgaggccgac gggcgctgac gcggcgcgac gggccatgac
     2581 cggccgtcgg cgtaccatgg cctggccgcg gtcgaccctc gtgcaacgcg ccggcagcca
     2641 cgcgtaaccg tccgttcacg tcccgcggct atcctgtcgg agtagccacc atgtccgatc
     2701 ccgcctcaac caccgccaac gtcccgcgat tcgccctcgg cgacggaatc gcggcgttcg
     2761 aggcggccgt ccagcgagcc cgctccgagg agtgggcgaa ccgcctgttc gaccgcgacg
     2821 tgcggctgtg gtcgaacgac ccgcgtgtcg gggcggcgat cgcggatcgc ctcggctggc
     2881 tggacgcccc ggcccatttc gccaaccaga tcgcggcgct ggaggggttc ggcgacgcgg
     2941 tggtcgacca gggctacacg accgcgatcg tcgccggcat gggcgggagc agcctcgcgc
     3001 cggacgtgct ccatcgcacg ttcggatcgc aggagggata cctggcactc cggatcctcg
     3061 attcgaccga cccggagtac gtcgccgcga ccttcgacga tctcgacccg ctccagacgc
     3121 tggtcatcgt cgcctcgaag tcggggacca cgacagagcc caacgccttc ctcgccgagg
     3181 cctgggcccg tgcccaggcg gcactcgacg tgcgcaagca ccacacctac gagcagcccg
     3241 gcgggttcat cgtggccatc agcgatccgg gccgcagcat cgatgccatc ccccaccacg
     3301 acgccttccg cgaggtgttc ctcaacccgc ccaacatcgg tggccggtac tcggcactca
     3361 cctacgtcgg gctcgtcccg gcgtcgctga tcgggctcga cctcgacgcc ctgctcgccg
     3421 cggggtcggc catgctcggt gcctgccgcg agccggagcc gaccgccaat cccggcctgt
     3481 cgctcgggct ggcgatcggc acgctggcac gaagcggtcg cgacaagctg acgttcctga
     3541 ccgatgccgc catctcgtcg ttcggagcgt gggtcgagca gctgatcgcc gagagtaccg
     3601 gcaagcacgg ggtcgggatc gtcccggtcg atctcgaacc cctgggcgcc gtcgatacct
     3661 acgggcccga ccgggcgttc gtccggatc
//
LOCUS       DATDDI010000920         1779 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_498588, whole genome shotgun sequence.
ACCESSION   DATDDI010000920 DATDDI010000000
VERSION     DATDDI010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498588"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VIU37_13485"
     CDS             complement(<1..705)
                     /locus_tag="VIU37_13485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015020.1"
                     /translation="MTTALVVPVLSNFAGLAELLASVDEPVLPVVVDNWASNRGVAGG
                     WNAGLRRAMAAGCEHTVLANDDCAFLPGTLGKLVASLGRWLVVSPLNVWEYPDGWAAA
                     ETYRPPLDFGCVALRTFEFVARVGLFDENFWPAYWEDIDMQRRLELVAADARGGTRWD
                     APYRHHVSVTQLSVPGGVRTAADHARSEAYYAAKWGGGIGEETYATPFGVPGASVAEW
                     PEPLSRRPGGTGGTGQR"
     gene            complement(702..965)
                     /locus_tag="VIU37_13490"
     CDS             complement(702..965)
                     /locus_tag="VIU37_13490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015021.1"
                     /translation="MTTLSRDVGGGAVIAPSRVTVTVEYPDGAMTFQVVVEGPLTGAE
                     VDIREEPDRELFVWPDDRPVRSFARKYVELRLGPYERAEFTTT"
     gene            complement(1149..1325)
                     /locus_tag="VIU37_13495"
     CDS             complement(1149..1325)
                     /locus_tag="VIU37_13495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015022.1"
                     /translation="MRRAMYERVASVERAAVIALADVDAELGLWARDVSPASWWRWLE
                     WTPQAAAYPRAEAT"
     gene            complement(1486..>1779)
                     /locus_tag="VIU37_13500"
     CDS             complement(1486..>1779)
                     /locus_tag="VIU37_13500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015023.1"
                     /translation="RVLGGGHDAAHRVAACVARGRAAGGVVTAPACRWAGATGEGWPC
                     TLRASWRVSVAHGDPWPLEYACPEHLGQVITSLGGDCRVTRLEAGQRYPEPRA"
BASE COUNT          240 a          780 c          547 g          212 t
ORIGIN      
        1 ccgctgcccc gtcccgcccg tcccgccggg ccgccgggac aacggctccg gccactccgc
       61 caccgacgcc cccggcaccc cgaacggcgt cgcgtacgtc tcctccccga tcccgccgcc
      121 ccacttcgcg gcgtagtacg cctccgaccg ggcgtggtcc gccgcggtcc gcaccccgcc
      181 cggcacgctc aactgggtca ccgacacgtg gtgccggtac ggcgcgtccc accgcgtccc
      241 gccccgcgcg tcggccgcga cgagctcgag ccgccgctgc atgtcgatgt cctcccagta
      301 cgccggccag aagttctcgt cgaacagccc caccctcgcg acgaactcga acgtccgcag
      361 cgccacgcac ccgaagtcca gcggcggccg gtacgtctcg gccgccgccc acccgtccgg
      421 gtactcccac acgttcagcg gcgacacgac cagccacctc ccgagggagg cgacgagctt
      481 gccgagggtg ccgggcagga acgcgcagtc gtcgttggcg aggacggtgt gctcgcagcc
      541 ggcggccatc gcccgccgca gccccgcgtt ccacccgccg gccacgcccc ggttcgacgc
      601 ccagttgtcg accacgacgg gcagcaccgg ctcgtcgacc gacgcgagca gctcggcgag
      661 cccggcgaag ttggacagca cgggcaccac cagcgccgtc gtcatgtggt ggtgaactcg
      721 gcccgctcgt acggcccgag ccgcaactcg acgtacttgc gggcaaacga ccggaccggc
      781 cggtcgtcgg gccacacgaa gagctcccgg tcgggctcct cccggatgtc gacctccgcg
      841 ccggtcagcg gcccctcgac cacgacctgg aaggtcatcg ccccgtccgg gtactccacg
      901 gtcaccgtca cccgggacgg cgcgatcacc gccccgccgc ccacgtccct cgacaacgtc
      961 gtcaccgggg ttgtcccttc tcggggagtc cgacgacgtg ctcgctcatc ggatcaaccc
     1021 ctgcatggcg tagcgcggcc ggaagcaccg gtggcacagc ggccagacca actcgccggt
     1081 ctccgggtcg gccaactgcc actgcccgaa cgggctcgac acgtcggcgc ggcagacgag
     1141 gcactccctc acgtcgcctc ggcccgcggg tacgccgccg cctgcggggt ccactccagc
     1201 cacctccacc acgacgccgg cgacacgtcc cgcgcccaca gcccgagctc cgcgtcgacg
     1261 tcggccaacg cgatcaccgc cgcccgctcc accgacgcca cccgctcgta catggcccgc
     1321 ctcaccgccc gcgcgagctc gtcccggtgg tcacgcggcc cgtcacgccc ggcgtcacgt
     1381 gacgcgtcac gtgacgcgtc acgcgtgacg tcacgcggcc tcacccggtg cgacgccggc
     1441 ctgccgtcct tgctcctgct gcccatccct gcatcctctc cctcatcacg cccggggctc
     1501 cgggtagcgt tggcccgcct cgagccgggt cacccggcag tccccgccga gcgacgtgat
     1561 cacctggccc aggtgctccg ggcaggcgta ctccaacggc cacgggtcgc cgtgcgccac
     1621 gctgacccgc cacgacgcgc gcagggtgca cggccacccc tcccccgtcg cgccggccca
     1681 ccggcaggcc ggcgcggtca ccactccccc ggccgcacgt ccgcgagcaa cgcacgcggc
     1741 cacccggtgc gccgcatcgt gccctccacc gagtacccg
//
LOCUS       DATDDI010000921         2030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_747876, whole genome shotgun sequence.
ACCESSION   DATDDI010000921 DATDDI010000000
VERSION     DATDDI010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_747876"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1327
                     /locus_tag="VIU37_13505"
     CDS             <1..1327
                     /locus_tag="VIU37_13505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015024.1"
                     /translation="ISIVKQDGYVIDAKLDPKYGYVTQTEKGITLIPTDPGDVTQTIE
                     DPTGTGQIVPAYLVNTAAVTIRYNGEDVTVRQPIVDGGAMMSAYWRTTGTPSGPATAA
                     SLRGSRYPIPGPATSVDPLISNGQRVMMPVRSVTTYENGKKVSWVSIDGKEWLRFTGE
                     GQAPRVVVGAGVSYQDGKWMKNGEEIDPVATGDARWWGADGSSQSGAAWGFGAPGTFY
                     ESRNIDPKTNTFDGRPSWVIRTEVVDRARRLYGGMGGPTEAEDGPNAGRRPLNPQREG
                     GEWDAAQAEKLAIRAARAASQPRFPGKEADDRLPFDLGRQREDIAFPWNTGEVRPRSQ
                     RPAPVLKPIQRGPLITEDPRDIGVMPKPSPTLRPAPTPELTSVETKRAYALKPVTAPK
                     LPKKPKPTPKGTGGPKTAHKPGAAKKPPATVKPIVMHDATGTETYSGGR"
     gene            1327..>2030
                     /locus_tag="VIU37_13510"
     CDS             1327..>2030
                     /locus_tag="VIU37_13510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015025.1"
                     /translation="MTFSFNDYEDSYLKDYSGGTPNRGFTKGGLALDAFRQSLKSNTP
                     ASPIHDYSRIPSAPFSAGAGGGGRAVGKVSQGSPAFQPAGPPQRYQVNLLGEAVGALG
                     ATAPGQAFLGTQGDQRGGSIPINFGLGPGVNVATAPVNFQNFATYAREAPLSVITSIL
                     GHNYQQPTGGDPYAQPAGPPNNQTIFENMSEADFGGMLDNIIDGVGAVGDAISAPFTA
                     AVDWYRRSDAVNRGKG"
BASE COUNT          343 a          739 c          712 g          236 t
ORIGIN      
        1 gatctcgatc gtcaagcagg acggctacgt catcgacgcg aagctcgacc cgaagtacgg
       61 ctacgtcacc cagacggaga aggggatcac cctcatcccg accgacccgg gcgacgtgac
      121 ccagacgatc gaggacccga ccggcaccgg ccagatcgtc ccggcctacc tcgtcaacac
      181 ggccgccgtg accatccgct acaacggcga ggacgtcacg gtccggcagc cgatcgtcga
      241 cggcggcgcg atgatgtcgg cctactggcg cacgaccggg acgcccagcg ggcccgcgac
      301 cgccgccagc ctgcgcggca gccgctaccc gatcccgggc ccggcgacgt cggtcgatcc
      361 gctcatcagc aacggccagc gggtgatgat gccggtccgt tcggtgacca cctacgagaa
      421 cggcaagaag gtgtcgtggg tcagcatcga cggcaaggag tggctgcggt tcacgggcga
      481 ggggcaggcg ccgcgcgtgg tcgtcggggc cggggtgagc tatcaggacg gcaagtggat
      541 gaagaacggc gaggagatcg acccggtggc gaccggcgac gctcgctggt ggggcgccga
      601 cgggagctcg cagtccggcg ccgcgtgggg gttcggcgct ccgggcacgt tctacgagtc
      661 ccgcaacatc gaccccaaga ccaacacgtt cgacggccgc ccgtcgtggg tcatccgcac
      721 cgaggtcgtc gatcgggccc gccgcctgta cggcggcatg ggtggtccga cggaggccga
      781 ggacggcccg aacgcgggtc gccggccgct caacccgcag cgcgagggcg gcgagtggga
      841 cgccgcccag gcggagaagc tggcgatccg ggccgcccgc gcggcgagcc agccgcggtt
      901 ccccggcaag gaggccgacg accgcctgcc gttcgacctc ggccgccagc gcgaggacat
      961 cgcgttcccg tggaacaccg gcgaggtccg gccgcgcagc cagcgcccgg ccccggtgct
     1021 caagccgatc cagcgcgggc cgctcatcac cgaggacccg cgtgacatcg gggtcatgcc
     1081 caagccgagt ccgaccctcc gcccggcgcc gacgccggag ctcacgtcgg tcgagacgaa
     1141 gcgtgcctac gcgctcaagc cggtcacggc gcccaagctg cccaagaagc cgaagccgac
     1201 cccgaagggc acgggcgggc ccaagacggc ccacaagccg ggcgcggcca agaagccgcc
     1261 cgcgacggtg aagccgatcg tgatgcacga cgccacaggg accgagacgt atagcggcgg
     1321 tcgctgatga ccttctcgtt caacgactac gaggactcgt acctcaagga ctactccggt
     1381 ggcacgccca accgggggtt cacgaagggc ggccttgcgc tcgacgcgtt ccgccagtcg
     1441 ctcaagtcga acacgcccgc ctccccgatc cacgactact cgcgcatccc gtcggcgccg
     1501 ttcagcgcgg gtgcgggcgg tggcggtcga gccgtcggca aggtcagcca ggggagcccc
     1561 gcgttccagc ccgccgggcc gccccagcgg taccaagtca acctgctggg ggaggcggtc
     1621 ggagctctcg gcgcgaccgc tcccgggcag gcgttcctcg gcacgcaggg ggaccagcgc
     1681 ggcgggtcga tcccgatcaa cttcggcctt gggccggggg tcaacgtcgc gaccgcgccg
     1741 gtcaacttcc agaacttcgc gacctacgcg cgcgaggcgc cgctgtcggt catcacctcg
     1801 atcctcggcc acaactacca gcagccgacc ggcggcgacc cgtacgccca gcccgccggc
     1861 ccgcccaaca accagacgat cttcgagaac atgagcgagg ccgatttcgg cgggatgctc
     1921 gacaacatca tcgacggcgt cggggcggtc ggtgacgcga tctccgcgcc gttcacggcc
     1981 gccgtcgact ggtaccggcg gtcggacgcg gtcaaccgcg gcaagggcat
//
LOCUS       DATDDI010000922         1850 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_144838, whole genome shotgun sequence.
ACCESSION   DATDDI010000922 DATDDI010000000
VERSION     DATDDI010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144838"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..627)
                     /locus_tag="VIU37_13515"
     CDS             complement(7..627)
                     /locus_tag="VIU37_13515"
                     /EC_number="1.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN reductase"
                     /protein_id="HEY6015026.1"
                     /translation="MPSRSLVVVSAGLSQPSSTRLLADRLSTAVDRHLRDAGVEPHVE
                     VVELRELAQDLANHLLTGFPSPRLQAALDAVLGADGLIAVTPIFSASYSGLFKLFFDL
                     VERDGFAGKPVLIAATGGTARHSLAIEHAIRPLFAYLNAATIATGVYAATEDWGAGGD
                     VADGSLVDRIDRAAGELAAAVVAREPVGRTDAFADPVSFEEQLRST"
     gene            complement(633..1733)
                     /locus_tag="VIU37_13520"
     CDS             complement(633..1733)
                     /locus_tag="VIU37_13520"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6015027.1"
                     /translation="MQFGVFSVGDVTADPVTGRTPTEAERIGAMVAIALRAEATGLDV
                     FATGEHHNPPFVPSSPTTMLGYIAARTERLILSTATTLITTNDPVKIAEDYAMLQHLA
                     GGRVDLMLGRGNMGPVYPWFGQDIRNAIPLAYENYDLLRRLWREDVVDWEGRFRTALT
                     GFTSTPRPLDGVPPFVWHGSIRSPEIAEQAAYYGDGFFHNNIFWPKEHVRRMVDLYRR
                     RFEHHGHGPADQAIVGLGGQVFMRANSQDAIREFRPYFDHAPVYGGGPSLEDYMDQTP
                     LTVGSPQQVIDRTLGFREIVGDYQRQLFLVDHAGLPVEVVLEQMDMLGELVIPVLRRE
                     FAARRAPNVPDAPVHPRVAAAEAARARPTVPA"
BASE COUNT          273 a          634 c          679 g          264 t
ORIGIN      
        1 tcgggcctac gtggagcgga gctgctcctc gaacgagacc gggtccgcga acgcgtcggt
       61 cctgcccacc ggctccctgg cgaccacggc ggcggcgagc tcgcccgccg cccgatcgat
      121 ccggtcgacc aggctcccgt ccgcgacatc gccgccggct ccccagtcct cggtcgcggc
      181 gtacacgccg gtcgcgatcg tcgcggcgtt gaggtaggcg aacagcggcc ggatcgcgtg
      241 ctcgatggcg agggagtggc gggcggtccc gccggtggcg gcgatcagca ccggcttgcc
      301 ggcgaacccg tcgcgctcca cgagatcgaa gaacagcttg aacaggccgc tgtacgacgc
      361 gctgaagatc ggggtgacgg cgatgagccc gtccgcaccc agcacggcgt ccagcgcagc
      421 ctggagcctc ggactcggga agccggtgag caggtggttg gccaggtcct gggcgagctc
      481 tcggagctcg acgacctcga cgtgaggctc aacgccggcg tcgcggaggt ggcggtcgac
      541 ggccgtcgac agccgatccg ccagcagccg ggtcgacgag ggctggctca gcccggcgct
      601 gacgacgacc agcgagcggg acggcatcga gctcacgccg gcaccgtcgg ccgtgcacga
      661 gcggcctcgg ccgccgcgac gcgggggtga accggcgcat cgggtacgtt cggggcgcgt
      721 cgcgcagcga actcgcggcg cagcaccggg atcacgagct cgccgagcat gtccatctgc
      781 tcgagcacga cctcgaccgg caacccggcg tggtcgacga ggaacagctg gcgctggtag
      841 tcaccgacga tctcgcggaa gccgagcgtc cggtcgatga cctgctgcgg gctgccgacc
      901 gtcagcggcg tctggtccat gtagtcctcg agcgacggac cgccgccgta gaccggggcg
      961 tggtcgaagt acgggcggaa ctcgcggatt gcgtcctggc tgttcgctcg catgaacacc
     1021 tgaccgccga gcccgacgat cgcctggtcg gccgggccgt ggccgtggtg ctcgaaccgc
     1081 cggcggtaga ggtcgaccat ccgccggacg tgctccttgg gccagaagat gttgttgtgg
     1141 aagaagccgt cgccgtagta ggcggcctgc tcggcgatct ccgggctccg gatcgagccg
     1201 tgccagacga acggtggcac gccgtcgagc ggtcgcggag tggacgtgaa cccggtcagc
     1261 gcggtccgga agcgaccctc ccagtccacc acgtcctcgc gccacagccg gcggagcagg
     1321 tcgtagttct cgtacgccag cgggatcgcg ttgcggatgt cctgcccgaa ccacgggtag
     1381 acggggccca tgttgccgcg gcccagcatc aggtcgaccc ggccgccggc gagatgctgg
     1441 agcatcgcgt agtcctcggc gatcttgacc gggtcgttgg tcgtgatcag cgtcgtggcg
     1501 gtcgacagga tcaaccgctc ggtccgggcg gcgatgtagc cgagcatcgt ggtcggcgac
     1561 gacggcacga acggcgggtt gtggtgctca cccgtcgcga acacgtccag cccggtcgcc
     1621 tcggccctga gggcgatcgc caccatcgcc ccgatccgtt cggcctcggt cggcgtgcgg
     1681 ccggtgaccg gatcggccgt gacgtcaccg acgctgaaga ccccgaattg catgccgact
     1741 cctgctcaga tctggcgatg atgctggttg acgtgcgaac catcgtatcc gggcaagcac
     1801 gttccggccc acgatcggcg cgctgcggcg gagcgggccg tcggcgcgcg
//
LOCUS       DATDDI010000923         3022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_331991, whole genome shotgun sequence.
ACCESSION   DATDDI010000923 DATDDI010000000
VERSION     DATDDI010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331991"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VIU37_13525"
     CDS             <1..347
                     /locus_tag="VIU37_13525"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6015028.1"
                     /translation="RARLDPALVSERASAPDAGPTVAAPPAPAAAFLERRHLTPREVE
                     VLTLVGSGWSNGEIASALFISRKTASVHVSNILGKLGVADRVEAGALAHRAGLVGPQR
                     PGSSPRELEPDG"
     gene            503..1366
                     /locus_tag="VIU37_13530"
     CDS             503..1366
                     /locus_tag="VIU37_13530"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY6015029.1"
                     /translation="MRSIRFGALAVALLLAFAQPVAAVGPGSSGDHAPLYYLSVGDSL
                     AAGVQPIGDPEDMHRTTDGYADQLYPIAKSRYPNLVLVKLGCPGETTGTMIDGGICDY
                     DHGSQLDEAVAFLHAHRQFVAFVTIDIGSNDFPCQTGLSCLPPGVASIQANLPTILGA
                     LREAAGPNVPIVGATIYDPFLGAWLTGPDGRSFAELTVFGAIVPLNQLLTGIYGAAGM
                     PVADVEGAFSTTDFTTTVPLEPFGDVPLNVVRICQWTWICAAPPLGPNNHANAAGYQA
                     IAQAFAKVLWP"
     gene            1474..2367
                     /locus_tag="VIU37_13535"
     CDS             1474..2367
                     /locus_tag="VIU37_13535"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEY6015030.1"
                     /translation="MATSARYRVFVEERFPPGAYLPLICAFTAAGYVPSIAWSGTPFQ
                     PLRFIAAAVVVGLVFLHLRLVDEVKDAEVDRVGRPTRPLPRGLVTERELTVGAIGALL
                     AALATGLSLGDEALLALLPATTFVLLADVEFLAPRRVHRDLLVYALAHSMVVPSLMAF
                     AWFADSAAGPSLVLAGLVILAWGVGLGLEFSRKTYGPDEERAFVETYSSAFGRARAGW
                     LVAGSLAIGMVGGAFYAGLAGGGPALALAAVIASGLILGAGAGLARANHRTVQGLGTL
                     IGLAVLLWPIGIATLLGGPVR"
     gene            2364..>3022
                     /locus_tag="VIU37_13540"
     CDS             2364..>3022
                     /locus_tag="VIU37_13540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015031.1"
                     /translation="MTVIDTTPLPTVQVRPASGDGATVRVWDNANIVESFSGVTLPLT
                     YSVAREAYATVYRSACRSLGVNPTTIDTEADVFDQMIGHLDGRVYYNVSSWHRVLALL
                     PGFGANQPLLERMMGATRPGGRAGERAEPVVAAGPDLLGLAGFGLRTGAGLLRFERRA
                     RAFEGTIQRLANESRASDVESMSIEQLLDRYDGVRRRALRSWHVTIFNDLAVMVVHGA
                     LR"
BASE COUNT          392 a         1088 c         1044 g          498 t
ORIGIN      
        1 gccgcgcccg gctggatccg gcgctggtca gcgagcgcgc gtcggcaccc gacgcgggcc
       61 cgacagtcgc cgcgccaccc gcgcccgcgg ccgcctttct cgaacgccgc catctcacgc
      121 cgcgcgaggt cgaggtcctg acgctcgtcg gctcaggttg gtcgaacggc gagatcgcgt
      181 ccgccctttt catcagccgg aagaccgcga gcgtgcacgt gtcgaacatc ctcggcaagc
      241 tgggtgttgc cgatcgcgtg gaggccggag ccctggccca tcgggcgggc ctcgtcggcc
      301 cacaacgccc gggctcgtcg ccgcgggaac tcgagccgga cggctgatcc cgagggtcgc
      361 ggtcggacca ctctaaggta gggcgttcga caaatgagtc gcccggcgcg gtcgtcttgg
      421 atcacgaccc gatgatccgg gccaggctcc gatcgacagt ggaagcgtcc cgggatggga
      481 cggaccactg gaggtacgga ccatgcgatc cattcgtttc ggcgctctcg ccgtcgccct
      541 gttgctcgcg ttcgcgcaac ctgtcgccgc ggtcgggcct ggctcgagcg gcgaccatgc
      601 ccctctctac tacctctcgg tcggcgattc gctggccgcg ggtgtccagc cgatcggcga
      661 cccggaggac atgcatcgga ccaccgacgg ctacgccgat cagttgtacc cgatcgcgaa
      721 gtcccggtac cccaatctcg tcctggtgaa gctcggctgc cccggcgaga cgaccgggac
      781 gatgatcgac ggtggcatct gcgactacga tcacggcagc cagctcgacg aggcggtcgc
      841 cttcctgcac gctcaccggc agttcgtggc gttcgtcacc atcgacatcg gctccaacga
      901 cttcccatgc cagacgggcc tgtcctgcct gccgcccggg gtcgcctcga tccaggcaaa
      961 cctgccgacg atcctcgggg cgcttcgcga agcggccggc ccgaatgtcc cgatcgtggg
     1021 cgccacgatc tacgacccgt tcctgggtgc ctggctgacc ggtccggacg gccggtcgtt
     1081 cgccgagctg accgtcttcg gggcgatcgt gccgctcaac cagctgctca ccgggatcta
     1141 cggcgccgcc gggatgcccg tcgccgatgt cgagggcgcc ttctcgacca ccgacttcac
     1201 gaccaccgtg ccgctggaac cgtttggcga cgtgccactc aacgtggtcc ggatctgcca
     1261 atggacgtgg atctgcgccg cgccgccgct cgggccgaac aaccacgcca acgcggcggg
     1321 ctatcaggcg atcgcccagg cgttcgcgaa ggtcctgtgg ccgtagccgg tcgctggatc
     1381 ggtgccgggc gcggccgcga ctcgtcggtc gcggccggca ccacgttcag cacctcggcg
     1441 acgccggccc gacacgggag aggggtcctt cccatggcga catcggctcg ataccgcgtc
     1501 ttcgtcgaag agcgatttcc tccaggcgcg tacctgcccc tgatctgcgc cttcacggcc
     1561 gcagggtacg tgccgtcgat cgcgtggagc gggacgccat tccagccgct tcgcttcatc
     1621 gccgcggcgg tcgtcgtggg gctcgtgttc ctgcatctcc ggctggtcga cgaggtcaag
     1681 gacgccgagg tcgatcgggt tggccggccc acgcgccccc tgccgcgggg tctcgtgacg
     1741 gagcgcgagc tgaccgtcgg ggcgatcggg gcgcttctgg cggcgctcgc gacagggctg
     1801 tcgctgggcg acgaggcgct gctcgccctg cttccggcga cgaccttcgt gctcctcgcc
     1861 gacgtcgagt ttctggcacc cagacgagtg caccgcgacc tgctggtcta cgcgctggcg
     1921 cactcgatgg tcgtgccgtc gctgatggcg ttcgcgtggt ttgcggactc ggcagccgga
     1981 ccgagtctcg tcctcgcggg cctcgtcatc ctcgcctggg gggtgggcct cgggctcgag
     2041 ttctcccgca agacctacgg gcccgacgaa gagcgcgcct tcgtcgagac ttactcctcc
     2101 gccttcggtc gtgcgcgcgc gggatggctg gtggcaggct cgctggcgat cggcatggtc
     2161 ggcggagcgt tctacgcggg gctcgccggc ggcggtcccg cgctggcgct ggctgccgtc
     2221 atcgcctcgg gcctgatcct cggtgcggga gccggcctcg cacgcgcgaa ccaccggacg
     2281 gtgcagggcc tcggcacgct catcggcctg gcggtccttc tctggcccat cgggatcgcc
     2341 accctcctcg gagggccggt tcgatgaccg tgatcgacac gaccccgctc cccacggtcc
     2401 aggtccgccc tgcatccggc gacggcgcca ccgtccgcgt gtgggacaac gccaatatcg
     2461 tcgagagctt ctcgggggtg accctgccgc tgacgtactc ggtggcccgc gaggcgtacg
     2521 cgaccgtcta ccgcagtgcc tgtcgctcgc tcggggtcaa cccgaccacg atcgacacgg
     2581 aagctgacgt cttcgaccag atgatcggcc acctcgacgg ccgggtctac tacaacgtct
     2641 cgagctggca ccgcgtcctg gccctgctcc cgggctttgg ggcgaaccag ccgctcctcg
     2701 agcggatgat gggcgccacg cgaccgggcg gccgggctgg cgaacgcgcg gagccggtcg
     2761 tcgcggccgg gcccgacctg ctcggcctgg cggggttcgg actccggacc ggggccggcc
     2821 tgctgcggtt cgagcgccgt gcgcgagcct tcgagggaac gatccagcgt ctcgcgaacg
     2881 agtcgcgggc gagcgacgtg gaatcgatgt cgatcgagca gctgctcgac cgatacgacg
     2941 gggtccggcg gcgtgccctc aggtcctggc acgtgacgat cttcaacgac ctggccgtga
     3001 tggtcgtcca cggggcgctc cg
//
LOCUS       DATDDI010000924         1894 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_311045, whole genome shotgun sequence.
ACCESSION   DATDDI010000924 DATDDI010000000
VERSION     DATDDI010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311045"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VIU37_13545"
     CDS             <1..357
                     /locus_tag="VIU37_13545"
                     /inference="COORDINATES: protein motif:HMM:TIGR02531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YerC/YecD family TrpR-related protein"
                     /protein_id="HEY6015032.1"
                     /translation="QRERTSHAMVDDWRTPEVEELFHAILQLDDVGETERFFRDLCTL
                     AELHDMAQRWAVVRLLDGGMHYAEISRQTGASTATITRIASWLNHGEGGYRAMLDKLA
                     SAEGGGTRPYPVRGDR"
     gene            354..1214
                     /gene="hisG"
                     /locus_tag="VIU37_13550"
     CDS             354..1214
                     /gene="hisG"
                     /locus_tag="VIU37_13550"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEY6015033.1"
                     /translation="MRTRLRLAIPNKGRLVEPTLRLLHDAGLVFEEHDRSLVALVQNY
                     DLDILFVRTNDVIEFVGDGVADLGITGDDLLSETGAELPRVRSLGYGRCRLAAAVPND
                     SPYQVIDDLAGLRVATAHPNTARRFFEGRRVPVEIIPISGAVEVAPRLGLAEAIVDLV
                     STGSTLVMNGLRQIGDVLESEAVLVANPAAHQERAADLAAIDTMLSAVIAARGRKYLM
                     MNAPAPRLDEIQGLLPALESPTVIPLAHAGMIAIHSVVGADDVWGLLPRLKAAGASGI
                     LVLPIEKIVP"
     gene            1211..>1894
                     /locus_tag="VIU37_13555"
     CDS             1211..>1894
                     /locus_tag="VIU37_13555"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEY6015034.1"
                     /translation="MSGTTVTRPAAPFRLRRLELAAAEAGDAVARAQRDALIRRGAVP
                     DVGIREQARATLAAVRARGDDGVRAANDAVGGGRPDGRLVLDRSELRDARDGLAAQTR
                     RALDQAIENVRRFAEPQRPQSITVAVAPGIEIERRWEPLARVGAYVPGGSAPYPSSLV
                     MTVVPAQVAGVGQVVVASPADRDGRTNPILLGAAGLLEVDAFVVAGGAQAIAALAYGL
                     TGAGVAPVDR"
BASE COUNT          249 a          713 c          678 g          254 t
ORIGIN      
        1 caacgagaga ggacgtcgca cgcgatggtc gacgactggc gaaccccgga ggtcgaggag
       61 ctgttccacg cgatcctcca gctcgatgac gtcggcgaga cggagcggtt cttccgcgac
      121 ctctgcacgc tcgccgagct ccacgacatg gcgcagcgct gggccgtggt ccgcctgctc
      181 gacggcggga tgcactacgc cgagatctct cgccagacgg gcgccagcac cgcgacgatc
      241 acccggatcg cctcctggct caaccacggc gagggcggct atcgggcgat gctcgacaag
      301 ctcgcctcgg ccgagggcgg tggcacccgt ccgtaccccg tccggggtga ccggtgagga
      361 cccgtctccg cctggcgatc cccaacaagg gacgcctcgt cgagcccacg ctccggctgc
      421 tccacgacgc gggcctcgtg ttcgaggagc acgaccggag cctcgtcgcg ctcgtccaga
      481 actacgatct cgacatcctg ttcgtccgca ccaacgacgt gatcgagttc gtcggggacg
      541 gcgtcgcgga cctcgggatc accggcgacg acctgctgag cgagaccggc gccgagctgc
      601 ccagggtgcg atccctcggc tatggccggt gccggctggc ggcggcggtg cccaacgact
      661 cgccctacca ggtcatcgac gacctcgccg ggctccgggt cgcgaccgcg cacccgaaca
      721 ccgcccggcg gttcttcgaa ggccgtcgcg tcccggtcga gatcatcccg atctcggggg
      781 ccgtggaggt cgcgccgcgg ctcgggctgg ccgaggcgat cgtcgacctg gtgtcgaccg
      841 gctcgacgct ggtcatgaac ggcctgcgcc agatcggcga cgtcctcgag tcggaggccg
      901 tcctggtcgc caatcccgcg gcgcaccagg aacgggcagc cgacctcgcc gccatcgaca
      961 cgatgctcag cgcggtcatc gccgcgcgcg ggcggaagta cctgatgatg aacgcgccgg
     1021 cacccaggct ggacgagatc caggggctcc tcccggcgct cgaatcgccg accgtcatcc
     1081 cgctcgccca cgcgggcatg atcgcgatcc attcggtcgt cggtgcggac gacgtctggg
     1141 gcctgctgcc gcggctcaag gccgccgggg cgtccgggat cctcgtcctg ccgatcgaga
     1201 agatcgtccc gtgagcggaa ccaccgtgac ccgcccggcg gcaccgttcc gcctgcgccg
     1261 gctcgagctc gcggccgccg aggccggcga tgcggtcgcc cgcgcccagc gggacgcact
     1321 gatccgccgc ggcgccgtgc ccgacgtcgg gatccgcgaa caggcgcgag ccacgctcgc
     1381 ggcggtccgc gcccgtggcg acgacggcgt gcgcgccgcc aacgacgccg tcggcggtgg
     1441 ccggcccgac ggccgcctcg tcctcgaccg gtccgagctg cgcgacgccc gtgacggtct
     1501 ggcggcgcaa acgcgccggg ccctcgatca ggccatcgag aacgtccgcc ggttcgccga
     1561 gccgcagcgg ccgcagtcca tcacggtcgc ggtggcgccc ggcatcgaga tcgagcgccg
     1621 ctgggagccg ctggcccgtg tcggggcgta cgtgccgggc ggctcggcac cctacccgtc
     1681 gtcgctggtc atgaccgtcg tcccggccca ggtcgcgggg gtgggccagg tggtcgtcgc
     1741 gtcgccggcc gatcgcgacg gccggacgaa cccgatcctg ctcggcgcgg cgggcctgct
     1801 cgaggtcgac gccttcgtcg tcgcgggcgg cgcccaggca atcgcggcgc ttgcgtacgg
     1861 ccttaccggc gccggcgtgg cgccggtcga tcgg
//
LOCUS       DATDDI010000925         5009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_665056, whole genome shotgun sequence.
ACCESSION   DATDDI010000925 DATDDI010000000
VERSION     DATDDI010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5009
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665056"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..816)
                     /locus_tag="VIU37_13560"
     CDS             complement(<1..816)
                     /locus_tag="VIU37_13560"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY6015035.1"
                     /translation="MLALRLHPDRRLRLHEEPVPVPGPGQALLRVSAVGLCGSDRHWM
                     VDGGIGDAVLRTPLILGHEFAAVVETGPLAGRRVAVDPADTCGTCELCRRNQSNLCQA
                     IRFAGHGATDGALRELMAWPEDCLHPVGDGVGDAEAALIEPLAVAIHAADLGHLGQVG
                     EGDSVAVVGCGPIGVLVVALARRAGATTVIATDPLRHRLDMATAFGATTTIQEPADAV
                     RSEAILAATGGRGCELVFEVAGESAAVEASIEAAAPGARVVLVGIPSDDRTTFT"
     gene            complement(834..2807)
                     /locus_tag="VIU37_13565"
     CDS             complement(834..2807)
                     /locus_tag="VIU37_13565"
                     /inference="COORDINATES: protein motif:HMM:NF019556.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HEY6015036.1"
                     /translation="MTTVFVPATAAPVVPTAGAAGRLRPIGGPAIKLGEGFWADRLTV
                     NRERTIPHGFEQLGAAGTLNNLRLAAGATGSYRAIGLEAGLAFPFLDSDVYKWLEAAA
                     WELGRGPDPALAAAADEAIGLITRAQRPDGYLNSFVQVVRPGTEYQDLAWGHELYCYG
                     HLIQAAIAWQRALGDERLLGVAVRAAGSAERALEAASSPGIEGHPQIEMALVELYRAT
                     GQRRHLDAAARMIEARGQGRLGPGRFGAAYWQDHRPVREAPTVAGHAVRQLYLDAGAV
                     DVATELGDEALLAAVQHRWRDMVATRTYLTGGLGSRHRDESFGDPYELPPDGAYAETC
                     AAIASVMLAWRLLLATGRAEYADLIERTIYNGVLSGVSSDGTRFFYENPLQRRTDRAA
                     ADAGAGERTAWNACACCPPNLMRTFSSWPQYLATTDEDGVQVHQFATAEIAAPIGHDL
                     ARVAMTTAFPWDGQVTLSIVESPDTPWTLSVRIPAWCRAASATLDGIGRSIPSGDRWL
                     RESRVWRPGDRLVLDLDMATRITQPDPRIDSVRGCVALERGPLVYCLESADLPDGVTL
                     EELELEPNASPSIDARPDLGEGVVGLEVAARRRRRPGRAWPYVDAASEPADGDGERGS
                     AETIRVRAIPYYGWANRVPGAMRVWIPQGLDEP"
     gene            3164..4123
                     /locus_tag="VIU37_13570"
     CDS             3164..4123
                     /locus_tag="VIU37_13570"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6015037.1"
                     /translation="MSELRLGINLWSQASDWPAFLAAAVRADRLGYDHLWTWDHLYAI
                     FGDPHQPIFEGYTALAAVAQATQRIRLGLFVSANTFRNPGLGVKAITTIDHVSGGRAI
                     MGIGGAWFELEHRAFGIDFGTGFGQRLDWLAEAAPAIRTLLDGGEVTSEPGDRYAFDH
                     LRIAPPPVQPHLPIMIGGAGEKKTLRIVARYADLWNVFGTPETVAAKDAVLRAHCADV
                     RRDHAEIERTLGCKITIRSTEAEAERVRRSLLDHNKTPMSRVDGDVSFWTGTVEQIAE
                     TMIGYRKVGFHTFICELPAPYDVETMESLVNLVKPMVEAAPIT"
     gene            complement(4116..>5009)
                     /locus_tag="VIU37_13575"
     CDS             complement(4116..>5009)
                     /locus_tag="VIU37_13575"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEY6015038.1"
                     /translation="AHAPEPGVTAVATRLRVTRARVGRGRYLIAAVCLTLVTIMVLPL
                     AMSIFASVKSTAEAAALPPTYLPSAITLDSYQRLWTYQAGLLTYAGNSFITALLTIAF
                     TLVLTVPAGYSVARFKVPGKEILFVLMLLALIVPYQALLTPMFLMFVQLKLTNTLVGL
                     AILHTAIQVPFSLYIMRNSFEAVPRELEEAAVMDGGNSWQILTRIFLPSVVPAIITTA
                     LFAFITSWNELLGSLVMMSKESAFTLPVILAAARTQTSLGGTDWGMLQAGVTISIIPC
                     VGIYLLLQKYYVSGLLSGAVK"
BASE COUNT          749 a         1764 c         1800 g          696 t
ORIGIN      
        1 cgtgaacgtc gtccgatcgt ccgacgggat gccgacgagg accacccggg cgcccggcgc
       61 ggcggcctcg atcgacgctt ccaccgccgc gctctcgccc gcgacctcga acaccagctc
      121 gcagccgcgg ccgccggtcg ccgcgaggat cgcctcggac cggacggcat cggccggctc
      181 ctggatcgtg gtggtggcgc cgaacgccgt ggccatgtcg agccggtggc gcagcggatc
      241 cgtcgcgatc acggtggttg cgccggcccg tctcgccagg gcgacgacca gcacgccgat
      301 cggcccgcag ccgacgaccg cgaccgagtc gccctcgccg acctggccga gatggccgag
      361 gtcggcggca tggatggcca cggcgagcgg ttcgatcagg gccgcctcgg cgtcgccgac
      421 gccgtcgccg accgggtgga ggcagtcctc gggccaggcc atcaactcgc gcagggctcc
      481 gtccgtcgcg ccgtggccgg caaagcgaat ggcctggcag aggttcgact ggttccgccg
      541 gcagagctcg caggtgccac aggtgtcggc cggatcgacg gccacgcgac gacccgccag
      601 cgggcccgtc tccacgaccg cggcgaattc gtgaccgagg atcagcgggg ttcggaggac
      661 ggcatcgccg atcccgccgt cgaccatcca gtgccggtcg gacccgcaca ggccgaccgc
      721 gctgacccgc agcagcgcct gacccgggcc cggcacggga acgggctcct cgtggaggcg
      781 gagccggcga tcgggatgca gtcgcagtgc cagcacccga tcgaccctcc gagctacggt
      841 tcgtccaacc cctgcgggat ccacacgcgc atcgcgcccg ggacccggtt ggcccagccg
      901 tagtatggga tcgcccggac gcggatggtc tccgcgctgc cgcgttcccc gtcgccgtcg
      961 gccggttccg aggccgcatc gacatacggc caggcacgtc caggccgccg gcgccggcgg
     1021 gcggccacct cgagcccgac gacgccctca ccgagatcgg gccgggcgtc gatggaaggg
     1081 ctggcgttcg gttcgagctc gagctcctcg agcgtcacgc catcggggag gtccgcgctt
     1141 tcgaggcagt acacgagcgg gccccgttcg agtgcgacgc agccgcgaac cgaatcgatc
     1201 cgcgggtccg gttgggtgat ccgggtcgcc atgtccagat cgaggaccag cctgtcgccc
     1261 ggtcgccaga cgcgggactc ccggagccag cggtcaccgg aggggatgga ccggccgatc
     1321 ccatcgagcg tggccgaggc cgcccggcac caggcgggga tccggaccga cagggtccac
     1381 ggcgtgtcgg gcgattcgac gatgctcagc gtcacctgcc cgtcccatgg gaaggcggtg
     1441 gtcatggcca ccctggcgag gtcgtgcccg atcggcgccg cgatctcggc cgtcgcgaac
     1501 tggtggacct ggaccccgtc ctcgtccgtg gtcgcgagat actgcggcca cgagctgaag
     1561 gtgcgcatga ggttcggcgg gcagcaggcg caggcgttcc aggccgtccg ctcaccggcc
     1621 ccggcatctg cggccgcgcg atccgtccgg cgctggagcg ggttctcgta gaagaaccgc
     1681 gtgccgtcgg acgacacccc cgacaggacc ccgttgtaga tcgtccgctc gatcaggtcg
     1741 gcgtactccg cccggcctgt ggccaggagc agccgccagg cgagcatgac gctcgcgatc
     1801 gcggcgcatg tctcggcgta ggcgccgtcg ggcgggagct cgtacgggtc gccgaacgac
     1861 tcgtcgcgat gccggctccc gagcccgccg gtcaggtacg tccgcgtcgc gaccatgtcg
     1921 cgccagcggt gctggaccgc ggcgaggagt gcctcgtcgc cgagttccgt ggcgacgtcg
     1981 acggcgccgg cgtccaggta cagctggcga accgcgtgac cggcgaccgt cggcgcttcc
     2041 cggaccgggc gatgatcctg ccaatacgcc gccccgaagc gccccgggcc gagccggccc
     2101 tgcccgcggg cctcgatcat tcgcgccgcc gcgtccaggt ggcgccgctg gccggtcgcc
     2161 cggtacagct ccaccagggc catctcgatc tgcgggtgcc cctcgatgcc cgggctggac
     2221 gcggcctcga gggcccgttc ggccgacccg gcggcgcgaa ccgcgacgcc gagcagccgc
     2281 tcatcaccga gcgcccgttg ccacgcgatc gcggcctgga tcaggtggcc gtagcagtag
     2341 agctcgtggc cccacgccag atcctggtac tcggtgccgg gccggacgac ctggacgaag
     2401 ctgttcaggt agccatccgg acgctgggcc cgggtgatca ggccgatcgc ctcgtcggcc
     2461 gccgcagcca gcgcgggatc cggcccgcgg ccgagctccc aggccgcggc ctccagccac
     2521 ttgtagacgt cggagtcgag gaacgggaag gcgagccccg cttcgagccc gatcgcgcgg
     2581 tacgagccgg tcgccccggc ggccagcctg aggttgttga gcgtccccgc cgcaccgagc
     2641 tgctcgaagc cgtggggaat cgtccgctcg cggttgacgg tcagccgatc ggcccagaag
     2701 ccttcaccga gcttgatcgc cgggccgccg atcgggcgaa gacgaccggc cgccccggcc
     2761 gtcggcacga ccggggcggc ggtcgcaggg acgaagacgg tggtcatgcg gcacgccgcg
     2821 cggcgacgtg accgggcatc cgagcgaggc ggcacaccga ccctggatct cctgctggac
     2881 tggttgggct gagttggcgc atacgcgcgc tcgcatacga ttgcatgaat gggaaccgga
     2941 cgcaagccgg ccggccgcgg ggcgccggct ccgggcactt gacaagtccg ctcccgtgcc
     3001 cgaccgttgc agctgcaatc gtatgcacca tttcgattgc gcagtctgcg ccctcgcccg
     3061 gcgggttccg ttccgctcga tcgctcctcc ttcgagcgga acgggatcgc catccgccgg
     3121 gacgctggcg atcgtccggg cgtccggcga gtgggaggga cacgtgtccg agctccggct
     3181 ggggatcaac ctgtggagcc aggccagcga ttggccggca ttcctggccg cggccgtgcg
     3241 ggccgatcgg ctcggctacg accacctctg gacctgggac cacctgtacg cgatcttcgg
     3301 cgatccgcac cagccgatct tcgaggggta caccgccctt gccgccgtgg cccaggccac
     3361 ccagcggatc cggctcggcc tgttcgtgtc ggccaacacg ttccgcaacc cggggctcgg
     3421 cgtcaaggcg atcaccacga tcgaccacgt cagcggcggc cgggcgatca tgggcatcgg
     3481 cggtgcctgg ttcgagctgg agcaccgagc cttcggcatc gacttcggca cgggcttcgg
     3541 ccagcggctc gactggctgg cggaggccgc cccggccatc cggacgctgc tcgacggcgg
     3601 cgaggtgacc agcgagcccg gcgaccggta tgccttcgac cacctgcgga tcgctccgcc
     3661 gcccgtccag ccgcacctcc cgatcatgat cggcggcgcg ggggagaaga agacactccg
     3721 gatcgtcgcc cggtatgccg acctgtggaa cgtcttcggc acgcccgaga cggtggcggc
     3781 caaggacgcc gtcctgcgtg cccactgcgc ggacgtccgg cgagatcacg ccgagatcga
     3841 gcggacgctc ggctgcaaga tcaccatccg ttcgaccgag gccgaggccg agcgggtccg
     3901 tcgctcgctc ctggaccaca acaagacacc gatgtcgcgg gtcgacggcg acgtctcgtt
     3961 ctggacggga acggtcgagc agatcgccga gacgatgatc ggctaccgga aggtgggctt
     4021 tcacacgttc atctgcgagc tgccggcgcc gtatgacgtc gagacgatgg agtcgctggt
     4081 caacctggtc aagccgatgg tcgaggccgc gccgatcact tgaccgcgcc gctgagcagc
     4141 cccgacacgt agtacttctg caggagcagg tagatcccga cgcaggggat gatcgagatc
     4201 gtcaccccag cctggagcat cccccagtcc gtgccgccca ggctggtctg ggtcctcgcg
     4261 gccgcgagga tcacgggcag ggtgaacgcc gattccttgc tcatcatcac gagtgagccg
     4321 agcagctcgt tccacgacgt gatgaaggcg aagagcgcgg tcgtgatgat ggcgggcacg
     4381 accgatggca ggaagatccg ggtcaggatc tgccaggagt tgccgccatc catcacggcg
     4441 gcctcctcga gctctcgtgg gaccgcctcg aagctgttgc gcatgatgta gaggctgaac
     4501 gggacctgga tcgcggtgtg gaggatggcc aggccgacga gcgtgttggt cagcttgagc
     4561 tggacgaaca tcaggaacat cggcgtcagc agggcctggt acgggacgat cagggcgagc
     4621 agcatcagga cgaacaggat ctccttgccc gggaccttga atcgggccac cgagtagccg
     4681 gccgggaccg tcagtacgag cgtgaacgcg atcgtcagca gcgccgtgat gaagctgttg
     4741 ccggcgtacg tcaggagccc cgcctggtac gtccagaggc gctggtagct gtcgagcgtg
     4801 atcgcgcttg ggaggtatgt cggcgggagg gccgccgcct cggccgtcga cttgaccgac
     4861 gcgaagatcg acatggcgag cggcaggacc atgatcgtga ccagcgtcag gcacacggca
     4921 gcgatgaggt agcgcccgcg gccgaccctg gcgcgggtga cgcgcaggcg ggtcgcgacg
     4981 gcggtcacgc ccggctccgg cgcgtgagc
//
LOCUS       DATDDI010000926         1761 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_685871, whole genome shotgun sequence.
ACCESSION   DATDDI010000926 DATDDI010000000
VERSION     DATDDI010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685871"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VIU37_13580"
     CDS             <1..474
                     /locus_tag="VIU37_13580"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY6015039.1"
                     /translation="FIGSDYVILPVLGLVVALLVRARRIRESVFLTVAVTGSVALNWI
                     MKLTFQRPRPKLPWAHVPPDFSFPSGHSMNSFVLFVGLAVLAWVVFGRRIGILALSVA
                     LGLVFLIGTSRIYLGYHYFTDVIGGVAAGLVWILIVGGALHFGPWVASWRRPSGG"
     gene            complement(482..1456)
                     /locus_tag="VIU37_13585"
     CDS             complement(482..1456)
                     /locus_tag="VIU37_13585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015040.1"
                     /translation="MTIFISLAGILGRMVGNVLTSTLGWASSLMFGRIPRSHQVLVNL
                     MLAGALVWVLLIAGVLLPGLGTFFRTSTPGVSVLDVSILRVACLAAIVLLPAGIGLAA
                     YLAPSRSERATGLAAVAQVLRGYPLALVLAVLLLVFLPAVGIDRKVRSLRRGWSDIHV
                     PIVVKPGGYDTMVEDLRSALIAADLEVAVHEAPRVLSIPGRLLALVADGNVRNLSPDR
                     LVELNGPGLEVGVYPSDIAISGAEHERTRARAVIVSRLATSSAHFTTSAESQAVEDRL
                     GQVARRRGRADGELEEIDGMLLDLDVAPEDWDILYRLRLQAERDALRG"
     gene            complement(1453..>1761)
                     /locus_tag="VIU37_13590"
     CDS             complement(1453..>1761)
                     /locus_tag="VIU37_13590"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015041.1"
                     /translation="NFGKMSLGIRPRRAIRPNDGMLDVIVVRASGPLGGLLAGWEALR
                     QKDLGESPEGHVLRTQAHEVRIDTTPPRLVEVDGTVVGHTPVSVEILPSALTVLVPAP
                     "
BASE COUNT          262 a          611 c          626 g          262 t
ORIGIN      
        1 ttcatcggtt ccgactacgt gatcctgccg gtcctcggcc tggtcgtggc gctcctggtc
       61 cgggcccggc ggatccggga atccgtcttc ctgaccgtcg cggtgaccgg cagcgtggcc
      121 ctcaactgga tcatgaagct gaccttccag cggcctcggc cgaagctgcc ctgggcgcac
      181 gtcccgcccg acttcagctt ccccagcggc cactcgatga actcgttcgt gctgttcgtc
      241 ggcctggcgg tgctggcctg ggtggtcttc ggccggcgca tcggcatcct tgcgctatcc
      301 gtcgcgctcg gtctggtgtt cctgatcggg accagccgga tctatctcgg ctatcactac
      361 ttcacggacg tcatcggcgg ggtcgcggcg ggcctggtct ggatcctgat cgtcggcggc
      421 gcgctccatt tcgggccctg ggtggcgagc tggcgccgcc cgtccggcgg ctgacgcgac
      481 ctcagccgcg gagcgcgtcg cgctcggcct gcaaccggag ccggtagagg atgtcccagt
      541 cctccggcgc gacatcgaga tcgaggagca tgccgtcgat ctcctccagc tcgccgtcgg
      601 ctcgaccgcg tcgtctggcg acctgcccga ggcgatcctc gaccgcctgg gactctgcgc
      661 tcgtcgtgaa gtgcgcggag gaggtggcca gtcggctgac gatcaccgcg cgagcccgag
      721 tgcgttcgtg ctccgccccc gagatcgcga tgtccgacgg gtagacgccg acttcgagtc
      781 cgggtccgtt gagctcgacc agccggtcgg gggaaaggtt ccgcacgttg ccgtcggcga
      841 cgagggcgag cagacggccg gggatcgaca gcacgcgggg cgcctcgtgc accgccacct
      901 cgagatccgc ggcgatcagc gcggaccgga ggtcctcgac catggtgtcg tagccgccgg
      961 gcttgacgac gatcgggacg tgaatgtcgg accagccgcg gcgaagactc cggaccttgc
     1021 ggtcgatgcc gacggccggc aggaacacca gcaggaggac cgccagcacc agggccagcg
     1081 gatacccgcg cagcacctgg gcgaccgcgg cgagccccgt ggcacgttcg ctgcgactcg
     1141 gcgcgaggta cgcggcgagg ccgatgccag cgggcaacag gacgatggcg gccaggcacg
     1201 cgacccgcag gatcgagaca tcgaggacgg aaacgccggg cgtcgatgtc cggaagaagg
     1261 tcccgagacc gggcagcagc acgcccgcga tcaacaggac ccacaccagc gcgcccgcca
     1321 gcatcaggtt caccagcacc tggtgcgagc gtgggatccg gccgaacatg agggaactcg
     1381 cccagccgag cgtgctggtc aggacgttcc cgaccatccg ccccaggatc ccggccagcg
     1441 agatgaagat ggtcatggcg ccgggaccag gacggtcagg gccgagggca ggatctcgac
     1501 gctgaccggc gtgtggccga cgaccgtgcc atcgacctcg acgagcctcg gcggcgtggt
     1561 gtcgatccgg acctcgtggg cctgcgttcg caggacgtgg ccctccgggc tctcgccgag
     1621 atccttctgc cgcagggcct cccagccggc gagcaggccg ccgagcgggc cggaggcccg
     1681 gacgacgatg acgtccagca ttccgtcgtt cggccggatg gcgcgacgcg ggcggatgcc
     1741 gagcgacatc ttcccgaagt t
//
LOCUS       DATDDI010000927         1692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_248979, whole genome shotgun sequence.
ACCESSION   DATDDI010000927 DATDDI010000000
VERSION     DATDDI010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248979"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..414
                     /gene="rpmF"
                     /locus_tag="VIU37_13595"
     CDS             208..414
                     /gene="rpmF"
                     /locus_tag="VIU37_13595"
                     /inference="COORDINATES: protein motif:HMM:TIGR01031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEY6015042.1"
                     /translation="MGVPKRRVSHARQGERRAHLAIELPSLEECSHCHEMKLPHHVCP
                     NCGYHNGRLAIELKPAAAPDDTAR"
     gene            437..1483
                     /gene="plsX"
                     /locus_tag="VIU37_13600"
     CDS             437..1483
                     /gene="plsX"
                     /locus_tag="VIU37_13600"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: protein motif:HMM:TIGR00182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEY6015043.1"
                     /translation="MSLRTGGTGVRVAVDAMGGDHGVSEVVPGALDHALSHPEDRMIL
                     VGDEAAIRAAAGAALPSNVSIVPASQVVAMDEHPALALREKKDSTILVAMDLVRRGDA
                     DAVVTAGHTGAGMAAAVLRLGRLPGVDRPSLAVQMVTASGPMVLLDIGANPDSTPENL
                     AQFARMGAIFAERVLGVAEPRVALLSIGEEKGKGDARIQRATELLDASGLRFEGNVEG
                     KDLPLHLADVVVCDAVLGNVVMKFFEGLSSFIFDLWRTEFQGSLRGRLAYLLLRPGVA
                     RIRHVFDYERAGGSPLLGVRGTVIITHGRARRRMIGFACDVAATTARTRVPDLIAESL
                     AASAAAPAGAREAS"
     gene            1480..>1692
                     /locus_tag="VIU37_13605"
     CDS             1480..>1692
                     /locus_tag="VIU37_13605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015044.1"
                     /translation="MSGPQLTVGRGVIVELVRLAALEVPGVARLGRGGPGWRRVLGGP
                     AVSVQFRNDRVLVRTWIVARPGQALGP"
BASE COUNT          234 a          613 c          600 g          245 t
ORIGIN      
        1 gagggctccc acgaccatcc ggacgacgac gtcgatcccc ggctcgaggc gttgcgcggg
       61 ttcaggcccg aggacgactg acgaggcacc ccgattcgcg ctagactccg ccctcggtcc
      121 ggcacgcgcc ccacggaccc gcgcagcccg aacccgtcca cgcatcgccc ggcgcgatga
      181 cctcaccaca ggagcaacca ggaccccatg ggtgtaccca agcgacgtgt ctcgcatgcc
      241 cgtcagggtg agcgtcgcgc gcatctcgcc atcgagctgc cgtccctcga ggagtgttcg
      301 cactgccacg agatgaagtt gccgcaccat gtctgcccga actgcggcta ccacaacggt
      361 cgactcgcca tcgagctcaa gcccgcggcc gcccccgacg acaccgcgcg ctgacgcggt
      421 gaccggaccg cagcccgtgt cgctgcgaac ggggggaacg ggagtccgcg tcgctgtcga
      481 cgcgatgggc ggcgatcacg gcgtatccga ggtcgtcccg ggtgccctcg accatgccct
      541 gagccatccc gaagaccgga tgatcctggt cggtgacgag gccgcgatcc gtgccgcggc
      601 gggcgccgcg ctgccctcca acgtctcgat cgtgcccgcc tcgcaggtgg tcgccatgga
      661 cgagcacccg gcgctggcgc tccgcgagaa gaaggattcg acgatcctgg tggcgatgga
      721 cctcgtccgt cgcggcgacg ccgacgcggt cgtgacggcc ggccataccg gcgctgggat
      781 ggcggcggcg gtcctgcggc tgggcaggct cccgggagtg gatcgcccgt ccctcgccgt
      841 ccagatggtg accgcatcgg gcccgatggt cctcctcgac atcggcgcca accccgattc
      901 gacccccgag aacctcgccc agttcgcccg gatgggagcg atcttcgccg agcgtgtcct
      961 gggggtggcc gagccacggg tcgcgctgct gtcgatcggc gaggagaagg gcaagggcga
     1021 cgcccggatc cagcgagcca ccgagctcct cgatgcgtcc ggcctccggt tcgagggcaa
     1081 tgtcgaaggg aaggacctgc cgctgcacct ggccgacgtg gtggtctgcg acgcggtcct
     1141 cggcaacgtc gtgatgaagt tcttcgaggg cctgtcgagc ttcatcttcg acctgtggcg
     1201 gaccgaattc caggggtcgc tgcggggacg cctggcgtac ctgctgctgc gacccggcgt
     1261 cgcccgcatc cggcacgtct tcgactacga gcgagccgga ggctccccgt tgctcggcgt
     1321 ccgcgggacg gtcatcatca cccacggacg ggcccgccgg cgcatgatcg ggttcgcctg
     1381 cgacgtggcg gccacgaccg cgcggacgcg ggtgccggat ctcatcgccg agtccctcgc
     1441 ggcgagcgca gcggcgccgg caggcgccag ggaggcatcg tgagcggccc gcagctgacc
     1501 gtcgggcgcg gcgtcatcgt cgagctcgtg cgtctggccg cgctcgaggt gcccggtgtc
     1561 gcacgactcg gtcggggcgg ccccggctgg cgccgggtgc tcggcggacc ggcggtatcc
     1621 gtgcagtttc gcaacgatcg cgtcctcgtc cgcacgtgga tcgtggctcg cccgggacag
     1681 gcgctcggcc cg
//
LOCUS       DATDDI010000928         2842 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_394774, whole genome shotgun sequence.
ACCESSION   DATDDI010000928 DATDDI010000000
VERSION     DATDDI010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2842
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394774"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..552
                     /locus_tag="VIU37_13610"
     CDS             274..552
                     /locus_tag="VIU37_13610"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY6015045.1"
                     /translation="MSIIAWIVLGAIAGYLAGFLVKGDEGLGVIGHIVLGIVGALVGG
                     WLAAVLFNSHPIDGPLDVSSIVVATIGAIIVVVVVGMFTGRRTGRGTI"
     gene            980..1372
                     /locus_tag="VIU37_13615"
     CDS             980..1372
                     /locus_tag="VIU37_13615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015046.1"
                     /translation="MATTTQDITRTSADETESGVRHRVAVMGDAVSAAAGSAATAASD
                     AASQVPAMADGARAVLVDANRQLRTGSDEILIVGGALSFGFAMGLLFGGANRLLVAAA
                     MLPAASMGLTILERANHGWLERGLHERS"
     gene            complement(1470..1658)
                     /locus_tag="VIU37_13620"
     CDS             complement(1470..1658)
                     /locus_tag="VIU37_13620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015047.1"
                     /translation="MKSLLAILALVATIAVAACGSSGSSGSTESLAPITSPDSSMAPS
                     VEPSMAPSVDTSAAPSAS"
     gene            1862..2635
                     /locus_tag="VIU37_13625"
     CDS             1862..2635
                     /locus_tag="VIU37_13625"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY6015048.1"
                     /translation="MTPPSPPAIGPPRRSGHGSAWSGGLAREELLGVLSHELRTPVTT
                     IYGGAHLLATRDLPEERRRAVAADVGQEAEQLYRIVEDLLVLLRAERGGIAPVGEPVA
                     IGHLIVTAIEREIVRHPGQEIRYLGARDAAVDGVDEQLVVHVVRNLLANAIAETTDGR
                     PIEIVVDNGNDEVVVRFLDSGPMPVDAAETLDPSAGWSPQARGSLALFAAGRLIEAMH
                     GHSWVRARAGGGAEFGFALPGGPPGPAPSPGSGPALAPG"
     gene            complement(2632..>2842)
                     /locus_tag="VIU37_13630"
     CDS             complement(2632..>2842)
                     /locus_tag="VIU37_13630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015049.1"
                     /translation="TPAVARRSYVHPAVLEAYLDGTIEPRRTTSSPTGPPSRSIAGSG
                     DEAAVLRLLRRPLARDARRSAAGSR"
BASE COUNT          398 a          993 c         1051 g          400 t
ORIGIN      
        1 ccggcaccgt gcgggaaacg atccgctgtc gcagcgtcaa tggggtggac ctccgggccg
       61 atacgcaaga cgtcgatggg cgcggcaaga atcgacggcc gggcatcccg accgcgtgcg
      121 gcccgcaggc gccggcatcg cagatggctt gcagcgcggc cactgtcagc atcttgttag
      181 gccgtcgctc ccgcgcgtta tcgccgacgt gtcgccgcgg cccgagattg gcgatcgtcc
      241 cggcttcggg atgaaccagc caggaggaag accgtgagta tcattgcttg gatcgtgctc
      301 ggtgcgatcg ccgggtacct tgccgggttt ctcgtcaagg gtgacgaggg tctcggcgtc
      361 atcggccaca tcgtcctggg gatcgtcggg gcgctcgtcg gcggctggct ggccgccgtc
      421 ctgttcaaca gccatccgat cgacgggccg ctcgacgtga gctccatcgt cgtggcgacg
      481 atcggcgcga tcatcgtcgt ggtcgtcgtc gggatgttca ccggccggcg gaccgggcgc
      541 gggaccatct gacgcccgtg gctcggccgg caaggcggca cgtcgctgca acggccgagg
      601 gccggcgggc aggcgcgggc gagacccgcg ccgccgcagg ctacacgcag tcgacctccc
      661 tgctactggg ggctcggggg tcgacgtcca gccttccagc ggcggaccgg cgccgatagg
      721 gaattgcaag gtgtcggccc ctcgccgtaa gcgagacgga ccgctccgcc gcgtacggtc
      781 atcccgtcga gacgaggacg caccgggggg agcggctcga cgaaccatcg aatgcatcgt
      841 ccggaagcgc ttgtgacggg gcgttccatc cggactcaga tcggacgacc cgggccccct
      901 ccccgggtcg tccgtcgcgt ctgggccgga tcgagttgca gcccgctcga tcacggtcac
      961 caaccacaag gaggccagaa tggctaccac cacgcaggac atcacgcgga cctccgccga
     1021 cgagacggag agcggcgtcc ggcatcgagt cgcggtgatg ggcgacgccg tctcggcggc
     1081 ggccggcagt gccgccacgg cagcgtccga cgcggcatcc caggtgcccg ccatggcgga
     1141 cggcgcgcgg gcggtcctcg tcgacgccaa ccgccagctc cgcaccggga gcgacgagat
     1201 cctgatcgtc gggggcgccc tttccttcgg gttcgcgatg ggtctgctgt tcggcggtgc
     1261 caatcgcctg ctggtggccg ccgccatgct tccggcggcg agcatgggcc tgacgatcct
     1321 cgagcgggcc aaccacggct ggctggagcg aggccttcac gagcgaagct gacgccgggc
     1381 gcggggacgg cactccccgg tccagccaca cgaatcgaaa cgccccgccg atcggcgggg
     1441 cgttcctcgt gcctggtcgg ctgttccgat cagctggccg acggcgcggc gctcgtgtcg
     1501 acggacgggg ccatcgacgg ctcgaccgac ggggccatcg agctgtcggg tgacgtgatc
     1561 ggcgcgaggc tttcggtcga gccactcgag ccgctcgaac cgcaggcggc cacggcaatc
     1621 gtggcgacga gggcgaggat ggcaagcaac gacttcatgg ggtcctcctg ggacttgtaa
     1681 ggggtgagca cccagcgtgc ccgccgcccc ctctctctcg catgccaccg tcggcccgac
     1741 ggcgttgcgg gtgactaaca cctggccggc atcgagcagc cgcgagggat tcgcaacgcg
     1801 ccctcccgtc gcggtgacgg tgggcggtca cgacgacgcc caagatcgaa cgatgcgtcg
     1861 gatgacaccg cccagccctc cggcgatcgg accgccgcga cggtcgggcc atggatcggc
     1921 ctggtccgga gggctggcac gagaggaact gctcggcgtg ctgtcgcacg agctgcggac
     1981 cccggtcacg acgatctacg gcggcgcgca cctgctcgcc acgcgcgatc tgcccgagga
     2041 acggcggcgt gccgtggccg cggacgtcgg acaggaggcg gagcagctct accggatcgt
     2101 cgaggacctg ctggtgctgc tccgggccga gcgcggcggg atcgcgccgg tcggggagcc
     2161 cgtcgccatc ggccacctga tcgtgaccgc catcgagcgg gagatcgtgc gacatcccgg
     2221 ccaggagatc cgatacctcg gcgccaggga tgccgccgtc gacggcgtgg acgagcagtt
     2281 ggtcgtccac gtggttcgca acctgctggc caacgcaatc gccgagacga ccgatggtcg
     2341 gccgatcgag atcgtcgtcg acaacggcaa cgacgaggtc gtcgtccggt tcctcgactc
     2401 cggtccgatg ccggtcgacg ccgccgagac cctcgacccg tcggccggct ggagcccgca
     2461 ggcccgcggg agcctggccc tgttcgcggc cgggcgcctg atcgaggcga tgcacgggca
     2521 cagctgggtg cgtgcccggg ccggcggcgg cgcggaattc gggtttgcgc tgcccggcgg
     2581 cccgcccggg ccggctccct cgccggggtc cggtccggct ctcgcccccg gctagcggga
     2641 cccggccgcc gatcgcctcg cgtcgcgcgc tagcggccgg cgcagcagcc tgagcacggc
     2701 cgcctcgtcg cccgaacccg cgatggatcg ggatggcggg ccggtggggc tcgacgtcgt
     2761 ccggcggggt tcgatcgtgc cgtcgagata ggcctcgagc accgcggggt ggacgtagct
     2821 ccgccgcgcg acggccggcg tg
//
LOCUS       DATDDI010000929         2407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_270011, whole genome shotgun sequence.
ACCESSION   DATDDI010000929 DATDDI010000000
VERSION     DATDDI010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270011"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1146)
                     /locus_tag="VIU37_13635"
     CDS             complement(64..1146)
                     /locus_tag="VIU37_13635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015050.1"
                     /translation="MTDPTAWRVAPLDLAAWGLAEVEHERTRFLGRPCLRFADTNRSL
                     VLPDVRLEDGSIELDLAVSRERSFHGLVWRVRDEDNFESFFVRSHQVGNPDSIQYTPV
                     NNGIPGWQLYHGPGFWAPVAFPIDAWFSIRVAFAGARADVYVGDLGAPVLRVGELKRP
                     PAVGGIGIQIGGPGLRVARFAWTDEVPDLSDLAVAPVADRPGAIRDWEASDPFPEAEI
                     EGLARLPVGLVAPRTWTHLTAEPSGLVDLSRVHGIRDGRNTVLVRTSVRSPADRTAPL
                     ELGFSDRATVFLNGQALFRGDDSYRSRDYRFLGSIGFWDTVYLPLRTGDNELVIAVSE
                     DLGGWGLQACLAGGTDGLPIETIATT"
     gene            complement(1191..2246)
                     /locus_tag="VIU37_13640"
     CDS             complement(1191..2246)
                     /locus_tag="VIU37_13640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015051.1"
                     /translation="MADWRAGLRADPLPWILDGTVPGARHLALRQLLDRPAADAEVLA
                     ARGEAMRTDPVAAILAAQDPAGWWEKPGSGYLPKYRSIVWQLVFLDQLGADGTDPRIR
                     TACAYLLDHSQTANGGFGAVTSGPGRPPPSTAIHCLNGNLLRALIGFGWLDDERVGRA
                     IDWQAAAITGEGEIRYYRSSLPGPGFRCGANEGQPCAWGATKAVLALARIPAARRAPH
                     VQRALDAGVAFLLSRDPAVADYPMGYGNAKPNGSWFKLGFPSGYVTDVLQVLEAVCEA
                     GAAADPRIGPAIDWILAQQDELGRWANQYAYAGKMVCDIDVPGQPSRWVTLRACRVLK
                     AVAGGGGVPVPSEAAAG"
BASE COUNT          371 a          869 c          864 g          303 t
ORIGIN      
        1 cgcgccgggg agatcgcgga gcacggctac agcgatcgac gagtgacctc cgtcccgaga
       61 tagtcaggtc gtcgcgatcg tctcgatcgg caagccgtcg gtgcctccgg cgagacaggc
      121 ctgcaggccc cagccgccca ggtcctccga gactgcgatc acgagctcgt tgtcgccggt
      181 cctcaggggc aggtacacgg tgtcccagaa gccgatgctg ccgaggaagc ggtagtcccg
      241 cgaccggtac gaatcgtcac cccggaacag tgcctgtccg ttcaggaaga cggtggcgcg
      301 gtcgctgaag ccgagctcca gcggcgcggt gcggtccgcc ggggacctca cggatgtccg
      361 gacaagcacc gtgttccgcc cgtcgcgaat gccatgcacc cgggagaggt cgacgaggcc
      421 cgacggttcg gcggtcaggt gcgtccacgt ccgcggggcg acgagcccga ccggcaaccg
      481 ggccagcccc tcgatctccg cctcggggaa cggatcggag gcttcccagt cacggatcgc
      541 cccgggccga tccgcgaccg gcgccaccgc gagatcgctc aagtccggta cctcgtcagt
      601 ccaggcgaag cgggcgacac ggagaccggg ccctccgatc tggatgccga tgccgccgac
      661 cgccggcggc cgcttgagct cgccgacgcg caggacgggt gcaccgaggt ccccgacgta
      721 gacgtccgcc cgagccccgg cgaacgcgac ccggatcgag aaccaggcat cgatcgggaa
      781 cgcgaccggc gcccagaagc ccggcccgtg gtatagctgc caaccgggaa tgccgttgtt
      841 caccggcgtg tactggatcg agtccggatt gccgacctga tgcgatcgca cgaagaacga
      901 ctcgaagttg tcctcatccc ggacacgcca gaccaggcca tggaaggacc gttcgcgcga
      961 gaccgccagg tccagctcga tggacccgtc ctcgagccgg acgtcgggaa ggacgagcga
     1021 ccgattcgtg tcggcaaacc ggaggcacgg gcggccgagg aaccgggtcc gctcgtgctc
     1081 gacctccgcc agaccccatg cggcgaggtc gagcggtgcg acgcgccagg cagtcggatc
     1141 ggtcatctcc ggcaagggta cgcgcgcgtc ccaggacgcg gacccgagga tcagccagcg
     1201 gccgcctcgg acgggaccgg gacgccgcca cctccggcga cggccttgag cacgcggcac
     1261 gcgcggaggg tcacccagcg gctcggctgg ccggggacgt cgatgtcgca gaccatcttc
     1321 ccggcatagg cgtactggtt ggcccatcgt ccgagctcgt cctgctgggc gaggatccag
     1381 tcgatcgccg ggccgattcg ggggtcggcg gccgctccgg cttcgcagac cgcctcgaga
     1441 acctgcagga cgtcggtcac gtacccggac gggaagccga gcttgaacca cgacccgttc
     1501 ggcttcgcgt tgccgtagcc catcgggtaa tccgccacgg ccgggtcgcg gctgaggagg
     1561 aacgccaccc cggcgtcgag cgcccgctgg acgtgcgggg cgcgccgcgc ggccgggatc
     1621 cgggcgagcg ccaggaccgc cttcgtcgcg ccccaggcgc acggctgtcc ctcgttcgcg
     1681 ccgcagcgga accccggccc gggtagcgag gaccggtagt accggatctc gccctcgccg
     1741 gtgatcgcgg cggcctgcca gtcgatcgcg cgtccgaccc gttcgtcgtc gagccagccg
     1801 aacccgatca gcgcccggag caggttcccg ttcaggcaat ggatcgcggt cgacggcggg
     1861 ggccgtcccg gaccggacgt caccgcgccg aagccgccgt tcgcggtctg gctgtgatcg
     1921 aggaggtagg cgcaggccgt ccggatccgc ggatcggtgc cgtcggcccc gagctggtcg
     1981 aggaagacga gctgccacac gatggaccgg tacttcggca ggtatcccga tccgggcttc
     2041 tcccaccagc ccgccgggtc ctgcgccgca aggatcgcgg cgacgggatc ggtgcgcatc
     2101 gcctcgcccc gggccgccag cacctccgca tcggcggccg gtcggtcgag gagctgtcgg
     2161 agcgcgagat ggcgcgcccc cggaacggtt ccgtcgagga tccagggaag cggatcggcc
     2221 cgcagcccgg ctcgccagtc agccatcgtc cggcgtcccg cccgtgaacg ccgcggcaag
     2281 atagccgacg gtccgatgcg gcgggccccc cgcatcggcc gacgtggcgg cggcgagacg
     2341 gtggccgcgg gtggctccga gggcccgcat cgccgacagc ccgaggaccg ccggctggat
     2401 cccgcac
//
LOCUS       DATDDI010000930         2089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_685978, whole genome shotgun sequence.
ACCESSION   DATDDI010000930 DATDDI010000000
VERSION     DATDDI010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685978"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /locus_tag="VIU37_13645"
     CDS             complement(<1..537)
                     /locus_tag="VIU37_13645"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol monophosphomannose synthase"
                     /protein_id="HEY6015052.1"
                     /translation="MTEPTANSPTSDKAAPGAGVWVIVPTFNEADNLGPITAAIHDAL
                     PAATVLVVDDNSPDGTGRLADQLAGDDPRVHVLHRQAKQGLGRAYLDGFAVALEGGAA
                     TIVQMDADFSHDPATLPGLIAPVVADEADLVIGSRYTRGGGVVDWGIGRQVISRGGSL
                     FARTILGLGPRDLTGGFKA"
     gene            complement(612..>2089)
                     /locus_tag="VIU37_13650"
     CDS             complement(612..>2089)
                     /locus_tag="VIU37_13650"
                     /inference="COORDINATES: protein motif:HMM:NF012907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FlgD immunoglobulin-like domain containing
                     protein"
                     /protein_id="HEY6015053.1"
                     /translation="TAPGAADAVVVMGYDYRTGSSGNAGSVSPIGGPTYDLADTLAAY
                     VGRIPPSKVILGVPYYGRAWSTSSSALNATTVSAAKYGSSVAVLYESALEFSAQYGRL
                     FDPVEVVAWTTYPKQNCTATYGCVTATRELYYDDAQTLAAKYDLVNRYGIRGVGIWAL
                     GYDGSRPELYQVLKDKFITDTVPPAITGSTVSPAVFSPNGDGRQDSTTMTVSVTGLIR
                     YGWTVEPFVDGMAGPPIVQGSADGEVVAYTWDGRAPDGTLAPDGTYRITVWAADASDN
                     RSTVQQLVTIDNTAPVLTATAAPASISPDGDRRFDVTTLGLTSSEPVTGRARVMDANG
                     VAVRTWKFAAATTGTWAWDGKDAAGKMVRDGTYTFRIDGVDPGANGTVQQLPILVDRT
                     IGAITWATRSFRPRAGQTDRLSFRLTRAATVAVSIYQGKTLIRRIWVDKAVTAGSYSW
                     SWNGRNGHRELVAPGVYTASIAATSAIGVSHLTRTVTVKAP"
BASE COUNT          279 a          734 c          765 g          311 t
ORIGIN      
        1 ggccttgaac ccgccggtca ggtcgcgtgg ccccaggccg aggatggtcc gggcgaacag
       61 gcttccgccc cgcgagatca cctgccgccc gatcccccaa tcgaccacgc cgccgccgcg
      121 cgtgtagcgc gagccgatca cgagatccgc ctcgtccgcg acgaccgggg cgatgagtcc
      181 gggcagcgtc gccgggtcgt ggctgaagtc ggcgtccatc tggacgatcg tggccgcgcc
      241 gccctcgagc gccacggcga agccgtcgag gtatgcccgg ccgagcccct gcttggcttg
      301 tcggtggagg acgtgcacgc gcggatcgtc gcccgcgagc tgatcggcca gccggcccgt
      361 gccatccggc gagttgtcgt cgacgacgag gaccgtggcg gccggcaggg cgtcgtggat
      421 ggcggcggtg atcgggccca ggttgtcggc ctcgttgaag gtcgggacga tcacccagac
      481 gccggcgccc ggcgcggcct tgtccgatgt cggggagttc gccgtcggct cggtcatcga
      541 ggccagtgta cgagcgccca ccccgcggcg cggcccgccg gctgcggcgc cgccggctat
      601 ggcgccgccg gctacggcgc cttgacggtc accgtccgcg tgaggtgcga gacgccgatc
      661 gcgctggtgg cggcgatcga ggccgtgtag acaccgggcg ccacgagctc gcggtggccg
      721 tttcgtccgt tccacgacca gctgtacgag cccgccgtca ccgccttgtc gacccagatc
      781 cggcgaatga gcgtcttgcc ctggtagatc gagacggcca ccgtcgccgc ccgggtcagc
      841 cggaacgaca gccggtcggt ctggccggcc cttggccgga aagaccgggt cgcccaggtg
      901 atcgcgccga tcgtccggtc gaccaggatg ggcagttgct ggacggtgcc gttggcgccc
      961 gggtccacgc catcgatgcg gaacgtgtag gtgccatcgc ggaccatctt gccggccgcg
     1021 tccttgccgt cccacgccca ggtcccggtc gtggccgcag cgaacttcca ggtgcgcacg
     1081 gcgacgccat tcgcgtccat gacccgcgcc cgtccggtca ccggctcgct gctcgtcagg
     1141 ccgagcgtgg tcacgtcgaa gcgccggtcg ccgtcgggcg agatcgacgc cggcgcggcg
     1201 gtcgccgtca ggaccggggc ggtgttgtcg atggtgacga gctgctgcac cgtcgagcgg
     1261 ttgtcggacg cgtcggccgc ccagaccgtg atccggtacg tgccgtccgg cgcgagcgtc
     1321 ccgtcgggtg cgcggccgtc ccaggtatag gcgacgacct cgccgtctgc ggagccctgg
     1381 acgatcggcg ggccggccat gccgtcgacg aacggctcga ccgtccagcc gtaccggatg
     1441 aggccggtca cgctgacggt catcgtcgtg ctgtcctggc ggccgtcgcc gttaggcgag
     1501 aagaccgcgg ggctcaccgt cgaaccggtg atcgccggcg gaaccgtgtc ggtgatgaac
     1561 ttgtccttga gcacctggta gagctcgggc cgcgatccgt cgtagccgag cgcccagatc
     1621 ccgacgcccc ggatcccgta gcggttgacc aggtcgtact tggcggcaag cgtctgggca
     1681 tcgtcgtagt agagctcccg cgtcgcggtc acgcagccgt acgtcgccgt gcagttctgc
     1741 ttcgggtagg tggtccaggc cacgacctcg accgggtcga agagccggcc gtattgcgcc
     1801 gagaactcga gcgcggactc gtacagcacc gccacggacg agccgtactt ggccgccgag
     1861 accgtggtcg cattgagggc cgatgacgag gtcgaccagg cgcggccgta gtacggcacg
     1921 ccgaggatca ccttcgacgg cgggatccgg cccacgtagg cggcgagcgt gtcggcgagg
     1981 tcgtaggtcg gtccgccgat cggcgagacc gacccggcgt tgcccgacga gccggtccga
     2041 tagtcgtagc ccatgaccac cacggcgtcc gcggcacccg gggccgtcg
//
LOCUS       DATDDI010000931         2027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_519597, whole genome shotgun sequence.
ACCESSION   DATDDI010000931 DATDDI010000000
VERSION     DATDDI010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519597"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..>2027
                     /gene="rph"
                     /locus_tag="VIU37_13655"
     CDS             90..>2027
                     /gene="rph"
                     /locus_tag="VIU37_13655"
                     /EC_number="2.7.9.6"
                     /inference="COORDINATES: protein motif:HMM:NF004877.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rifamycin-inactivating phosphotransferase"
                     /protein_id="HEY6015054.1"
                     /translation="MLGFEAVDRAGIAAVGGKGANLAELSRVRGVHVPAGFCVTTAAF
                     RRVMADAPSFDDRLDRLSVLKADDRETIRALSAELRQAIEGAAIPDDLADAITRAAAR
                     LGEHAAFAVRSSATAEDLPTESFAGQQDTYLNVIGPAAILEHVRRCWGSLFTERAVTY
                     RIRNGLDHRKVQMAVVVQRMVFAEAAGILFTADPVTGNRKVATVEAAFGLGEALVSGL
                     VNPDVHRVRDGRIVETSLGIKQRAVEASPGGGTEHRAIEPERQERPALTDAQVVRLVR
                     LGRRIEAHFGRPQDIEWCLADGGFQIVQSRPITTLFPIPPADDGQNHVYISVGHQQMM
                     TDAMKPLGLSFWQLTTPRPMAEAGGRLFVDVTTSLASPERQARLLDLSRSDPLIRDAL
                     QTIIERGDFVPSLPDVDPGGVPADEALAPIETDSAVVDELIGRNQASVAALRRDIRAT
                     SGSALLDFIRADIGELRRLLFDPRSRQVFMSAMEASRWLNEQMEAWLGEKNAADTLTR
                     SVPNNVTSEMGLALLDVADVIRPHPDVVAFLQEVEDDGFLDELPRVAGGRDARDAIRT
                     WLDRYGVRCVGEIDITRPRWSERPATLVPLILANVRNFGPGEGERRFERGRREAHDKE
                     RQLLERLRALPDGKRKAEEAKR"
BASE COUNT          320 a          709 c          712 g          286 t
ORIGIN      
        1 ggcaagcccc ggttcatgcc ctagagtccg caggcttcgg ccagacccgc tggccgccga
       61 agacccaggg ggcctggatg gaccgagacg tgttggggtt cgaggcagtc gaccgagccg
      121 ggatcgccgc tgtcgggggc aagggcgcca acctggcgga gctctcgcgg gtccggggcg
      181 tccacgtccc cgccggcttc tgcgtcacga ccgccgcgtt ccggcgggtc atggccgacg
      241 caccgtcgtt cgacgatcgg ctcgatcggc tgtcggtcct gaaggcggac gaccgcgaga
      301 cgatccgcgc gctcagcgcg gagctccggc aggccatcga aggggccgcc atccccgacg
      361 acctggcgga cgcgatcacc cgcgcagccg cccgcctcgg cgaacacgcc gccttcgccg
      421 tccggtccag cgccacggcg gaggacctgc ccacggagtc gttcgcgggg cagcaggaca
      481 cctacctgaa cgtcatcggg ccggcggcga tcctcgagca tgtccgccgg tgctggggct
      541 cgctgttcac cgaacgcgcg gtgacgtacc gcatccgaaa cggcctggac caccggaagg
      601 tccagatggc cgtcgtcgtc cagcggatgg tcttcgcgga ggcagccggc atcctgttca
      661 ccgccgaccc cgtcaccggc aaccggaagg tcgccaccgt ggaggccgcc ttcggcttgg
      721 gtgaggccct cgtctccggc ttggtgaacc cggacgtcca cagggtgcga gacggccgca
      781 tcgtcgagac gtcgcttggc atcaagcaac gtgccgtcga ggcctcaccg ggcggcggaa
      841 cggagcaccg ggcgatcgag cccgagcggc aggaacggcc ggcgctcacg gacgcgcagg
      901 tcgtgcggct cgtgcggctt ggccgtcgca tcgaagcgca tttcggccgg ccgcaggaca
      961 tcgagtggtg cctcgccgac ggtggcttcc agatcgtcca gagccgcccg atcaccacgc
     1021 tgttccccat tcctccggcc gacgacggac agaaccacgt ctacatttcc gtcggccatc
     1081 agcagatgat gaccgacgcc atgaagcccc tcgggctctc gttctggcag ttgacgaccc
     1141 cccggcccat ggcggaggcc ggcgggaggc tgttcgtcga cgtcaccacc agcctcgctt
     1201 cgccggagcg ccaggcaagg ctcctcgacc tgtcgagatc cgatccgctg atcagggacg
     1261 ccctgcagac catcatcgaa cgcggcgact tcgtcccgtc gctcccggat gtggatcccg
     1321 gcggggtgcc tgcggacgag gccctcgcac cgatcgagac cgactcggcc gtcgtcgatg
     1381 agctgatcgg gcgcaatcag gcgtccgtcg ccgccctgag acgcgacatc cgggcgacgt
     1441 ccggatcggc gctgctcgac ttcatccggg cggacatcgg cgaactgcgg cggctcctgt
     1501 tcgacccgag aagccgccag gtgttcatgt cggcgatgga ggcgtcccgg tggctcaacg
     1561 agcagatgga agcatggctg ggagagaaga acgcggccga taccctcacc cggtccgtcc
     1621 ccaacaacgt cacgtcggag atggggctgg ccctcctgga cgtcgctgat gtcatccggc
     1681 cccatccgga cgtggtggcg ttcctgcagg aggtcgagga cgacggtttc ctcgacgagc
     1741 ttcccagggt cgcgggcggg agggacgccc gagacgccat ccggacctgg ctcgaccggt
     1801 acggcgtgcg ctgcgtgggc gagatcgaca tcacgaggcc gcgctggagc gaacgcccgg
     1861 cgacgctcgt cccactgatc ctcgccaacg tcaggaactt cgggccgggc gaaggcgagc
     1921 ggcgcttcga gcggggacgg cgggaggccc acgacaagga gcgccagctc ctggagcggt
     1981 tacgtgcgtt gccggacggc aagcggaagg ccgaagaggc caagcgc
//
LOCUS       DATDDI010000932         1997 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_40793, whole genome shotgun sequence.
ACCESSION   DATDDI010000932 DATDDI010000000
VERSION     DATDDI010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40793"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VIU37_13660"
     CDS             <1..336
                     /locus_tag="VIU37_13660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015055.1"
                     /translation="SRLTDELPARLTTAGVPAQFVGQFANGGSFDIAGTGDLGTKILA
                     ATPPAQQSFVQPLIPGIVAAVHDSISIAIASSFWVGIIGAVVGAIVVLFIEEVPMRAT
                     FEMPETEVA"
     gene            complement(484..1248)
                     /locus_tag="VIU37_13665"
     CDS             complement(484..1248)
                     /locus_tag="VIU37_13665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015056.1"
                     /translation="MLARYRQFVVPLAIIAAGVLFYMENPWFFPADGSTERQVATVAF
                     WVLAIAVLVLMFEDRHSADAQTVEVEGPAFTRYLFSNTRAGLFWLPVRIFLSFEWIEA
                     GWHKLTGTGWIDGGASLLGFWQNAVKVPEPPGRASITFEWYRGFLQFLIDNHAQGWFG
                     WLITLGELAVGIGLLVGALVGIAAFFGALMNMSFLLAGSASVNPILFTFEVGLMLAWK
                     VAGYYGVDRWLLPMLGVPWHSKVGTRVGQPGHVPAS"
     gene            1549..>1997
                     /locus_tag="VIU37_13670"
     CDS             1549..>1997
                     /locus_tag="VIU37_13670"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6015057.1"
                     /translation="MSDRPVFAVIPAYQEGLRVAAVVAATRRRLPVIVVDDGSTDETA
                     ARAEAAGATVIRQRPNAGKGAALRAGFARALEQGAVAVVTLDGDGQHDPDEIPAFLEA
                     FEHSGAQLVIGRRDFRAMPFVRRASNTLGRMAISVAVGRDIPDNQSG"
BASE COUNT          321 a          691 c          704 g          281 t
ORIGIN      
        1 agccggctca ccgacgagct gcccgcgcgg ctgaccacgg cgggtgtacc ggcccaattc
       61 gtcggccagt tcgcgaacgg cggcagcttc gacatcgccg gcaccggcga tctcggcacc
      121 aagatcctgg ccgcgacgcc gccggcccag cagtcgttcg tccagccgct catcccgggg
      181 atcgtggcgg ccgtccacga ttcgatctcg atcgcgatcg catcgagctt ctgggtcggg
      241 atcatcgggg cggtcgtcgg cgcgatcgtc gtcctgttca tcgaggaggt gccgatgcgc
      301 gcgaccttcg agatgcccga gaccgaggtc gcctgacggg ggacgcctgt cggggcctcc
      361 ggggcccccg tcgcgtcgcc acatcgcaga caggaagaag ggccggttgg gggaccggcc
      421 cttccgagga ggaatgcggt tgagcggtgc ccggccagtg cccgggccgg gcgccgcgct
      481 gcgtcagctc gcggggacgt gcccgggttg cccgacgcgg gtgccgacct tggagtgcca
      541 cggcaccccc agcatcggga gcagccagcg atcgacgccg tagtagcccg cgaccttcca
      601 ggcgagcatg agcccgacct cgaaggtgaa caggatcggg ttgaccgacg cggagccggc
      661 cagcaggaac gacatgttca tgagggcgcc gaagaaggcg gcgatgccga ccagcgcgcc
      721 gaccaaaagg ccgatgccga ccgcgagctc accgagcgtg atgagccagc cgaaccagcc
      781 ctgtgcgtga ttgtcgatga ggaactggag gaatccgcgg taccactcga acgtgatcga
      841 ggcgcgtccc gggggctcgg gaaccttgac ggcgttctgc cagaagccaa ggaggctcgc
      901 gccgccgtcg atccagccgg tgccggtcag cttgtgccag cccgcttcga tccactcgaa
      961 gctgaggaag atgcgcaccg gcagccagaa gagccctgcc cgcgtgttgc tgaacaggta
     1021 gcgcgtgaat gcgggcccct cgacttccac cgtttgggca tcggcggagt gccggtcctc
     1081 gaacatcagc accaggaccg cgatcgcgag gacccagaac gcgacggtcg cgacctgccg
     1141 ctcggtcgac ccgtcagcgg ggaagaacca cgggttctcc atgtagaaga ggaccccggc
     1201 ggcgatgatc gccagcggaa ccacgaactg cctgtatcgc gccaacatgc tctcttccct
     1261 tcctcgccgg agggcgtctc ggtggctggt gagacgcatt ccgtcttccg gcatattcga
     1321 atgcattgac gatgccgtcc agccccacct tgagcggagg gccgaatggc ccttcgtgcc
     1381 gggccactcc tcccggacga atggcatgac gcttgtgatc catgcggcgg gagccgtcag
     1441 ccacggcaga tccgcgcgtg gagtcgggcc gaaggaccct gcgccgccgg gcgattcggc
     1501 cggacggcgc cgcacgtcgg cgccccatgg ccggagtact gtctggcggt gtcagaccgg
     1561 cccgtcttcg ccgtcatccc ggcctaccag gagggcctgc gggtcgccgc ggtcgtggcg
     1621 gccacgcgac gccgactgcc ggtcatcgtc gtcgacgacg gatcgaccga cgagaccgcc
     1681 gcccgggccg aggccgccgg cgcgacggtg atccggcagc ggcccaacgc cggcaagggc
     1741 gccgccctgc gggcgggctt cgcccgggcg ctcgagcagg gcgcggtcgc cgtggtcacg
     1801 ctcgacggtg acggccagca cgaccccgac gagatcccgg cgttcctgga agcgttcgaa
     1861 cactcaggcg cacaactcgt catcggccgg cgcgacttca gggcgatgcc gttcgtgcgt
     1921 cgagcctcca acacgctcgg ccggatggcg atctcggtgg cggtcggacg ggacatcccg
     1981 gacaaccagt cgggcta
//
LOCUS       DATDDI010000933         1727 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_665263, whole genome shotgun sequence.
ACCESSION   DATDDI010000933 DATDDI010000000
VERSION     DATDDI010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665263"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..830
                     /locus_tag="VIU37_13675"
     CDS             <1..830
                     /locus_tag="VIU37_13675"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEY6015058.1"
                     /translation="GLHPLIAEDVVEGNQRAKVEVTDGLVHVVMFVLEAPETAPTDGA
                     AFVRAREVDLVLGDGFLFSSHPGSWDPRTGDHFRTGLGPVLRSGPDHTLWAIIDAIVD
                     GYFPFADRLEDLIDSLQDDVVDRPTRQTLERLFGLKRDLIAVRRAVSPVREILNQITN
                     RELKLIDAEEVLYFRDIYDHVIRLSDELDTDRELVAASVEIYLSTINNNLSVIMKRLT
                     GVTVILAGIGAIGGLFGMSEAGAAFAGAEAAGFWLVVVATIALAVGAAAILRRIDWI"
     gene            complement(856..1557)
                     /locus_tag="VIU37_13680"
     CDS             complement(856..1557)
                     /locus_tag="VIU37_13680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015059.1"
                     /translation="MHAISERFRTRLLPALLLAPGIALLGSGLLSYTSAVEPQPVAQA
                     LQSYIPPPTLVPGLDLPDGGGGGGGTEPSFPPDRVATRIVISKLRIDLPVIAQPPGSG
                     DFPLCDVAMYLTDLGQPGSGRATYIYAHARTGMFYPMLVSSQDHNGAKMIGDVVQVYT
                     SDNYLFLYEIFQVRRHATDLVDAFNDPDGNLWLQTSEGPNASYPKLQVVAKFLSADKT
                     DPNAAHPNAQPRQCQ"
BASE COUNT          261 a          561 c          635 g          270 t
ORIGIN      
        1 tgggcctcca tccgctcatc gccgaggacg tcgtcgaggg caaccagcgg gccaaggtgg
       61 aggtcacgga cgggctcgtg cacgttgtca tgttcgtgct cgaggcgccg gagaccgccc
      121 cgaccgacgg tgccgcgttc gttcgggccc gggaggtcga cctcgtcctg ggcgacgggt
      181 tcctcttcag ctcacatccc ggctcctggg acccgcgcac cggcgatcat ttccggacgg
      241 gcctcggccc cgtcctgcgc tcggggccgg atcacaccct gtgggcgatc atcgacgcga
      301 tcgtggacgg ctacttcccg ttcgcggatc gcctcgagga cctcatcgat tcgctccagg
      361 acgacgtcgt cgatcgcccg acgcgccaga cgctcgagcg gctgttcggg ctgaagcgcg
      421 acctcatcgc cgtccggcgt gcggtgtcgc cggtccgcga gatcctgaac cagatcacga
      481 atcgcgagct caagctcatc gatgccgagg aggtcctgta cttccgcgac atctacgacc
      541 acgtgatccg gctgtcggac gagctcgaca ccgaccgcga gctcgtcgcg gcgagcgtcg
      601 agatctacct ctcgacgatc aacaacaacc tgtcggtgat catgaagcgc ctgaccgggg
      661 tcacggtcat cctggccggg atcggtgcca tcggcgggct gttcgggatg agcgaggctg
      721 gggccgcgtt cgccggagcc gaggccgctg gcttctggct ggtggtggtc gcgacgatcg
      781 ccctcgcggt cggggcggcc gcgatcctgc gccggatcga ctggatctag cccccgaaga
      841 tcggtcgccg ccgggctact ggcactgccg aggctgggcg ttcgggtggg ccgcgttcgg
      901 gtcggtcttg tccgccgaca ggaacttggc gacgacctgg agcttcggat acgaggcgtt
      961 cgggccttcc gacgtctgga gccacaggtt gccgtcgggg tcgttgaacg cgtcgacgag
     1021 gtccgtggcg tggcgccgga cctggaagat ctcgtacagg aacaggtagt tgtcgctcgt
     1081 gtagacctgc acgacgtcgc cgatcatctt cgccccgttg tggtcctggg acgagacgag
     1141 catcgggtag aacatccccg tccgggcgtg ggcgtagatg taggtcgcgc ggccggagcc
     1201 cggctggccc aggtcggtga ggtacatcgc gacgtcgcac agcgggaagt cgccgctgcc
     1261 cggtggctgg gcgatgaccg gaaggtcgat acgcagcttc gagatgacga tccgggtggc
     1321 gacgcgatcc ggcggaaagc tcggctcggt cccgccgccc ccgccaccgc catcaggcag
     1381 gtcgaggccg ggcaccagcg tcggcggcgg gatgtacgac tggagcgcct gggcgacggg
     1441 ctggggctcg acggccgagg tgtagctcag caacccgctg ccgagcagcg cgatcccggg
     1501 cgcgagcagg agggcaggca ggagccgggt gcggaaccgc tccgagatcg cgtgcacgga
     1561 cgagagccta gcaaagggtc cttgcgagcc accctgagcc gaaggtacgg gcgccgccgg
     1621 ggctaggcga tcgcgcgggc cgcctggatg acgacgtcga ggagcgcgcc cggggcgatc
     1681 ccgaacagga tcgtgaggag cgaggcggcg atgagcccgg tccacat
//
LOCUS       DATDDI010000934         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_477796, whole genome shotgun sequence.
ACCESSION   DATDDI010000934 DATDDI010000000
VERSION     DATDDI010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477796"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VIU37_13685"
     CDS             <1..658
                     /locus_tag="VIU37_13685"
                     /inference="COORDINATES: protein motif:HMM:NF014755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEY6015060.1"
                     /translation="GDLFERFQRRAVQAYGPMGVDPRGCEYISVFFRKGSRFAAGFDT
                     DAGTAICKVVIKDREALAALDPFGKTMLMTTLHWPDEIRATDELDLGDEEYDFKPAEL
                     AMANQLVSAMTGEFDPAQYKDEYREALEAVIEAKVEGKETVEVEEPEETGKLIDLMAA
                     LEASVNAAKASREKPVSVSEAKAAKAAKAGRAAATAKAKAEEDADEVPAKPARKRKTA
                     "
     gene            679..1083
                     /locus_tag="VIU37_13690"
     CDS             679..1083
                     /locus_tag="VIU37_13690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015061.1"
                     /translation="MTGEQASDERDVVYVPRQAYRQLLATNRRSLMLGSLVGIMSLVG
                     GWFLNRPSPGGISPIVILFVLVGVAAMGWTVVTGRRQSDLPPQDWYGGPGPDPTRIDL
                     VPVERTPRPQLETPGSFLGAPFDGGPGGPGPS"
     gene            1107..>1739
                     /locus_tag="VIU37_13695"
     CDS             1107..>1739
                     /locus_tag="VIU37_13695"
                     /inference="COORDINATES: protein motif:HMM:TIGR02777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
                     /protein_id="HEY6015062.1"
                     /translation="MPLEEYRRKRDFSRTPEPAPAAPTAAAGRSRGRYVVQRHRATRL
                     HYDFRLEIDGVLVSWAVPKGPTLDPGVRRMAVHVADHPLEYFDFEGVIPARQYGAGDV
                     TVWDWGTWEPEAETPDPAAAIANGELKFRIDGEKLKGRFTIVRTSRRPGAAPRTAFED
                     DEGEQWLLIHKRDADAVPGWDAEDHPRSVKSGRTNDQVKADVPAIWVSEMP"
BASE COUNT          288 a          592 c          621 g          238 t
ORIGIN      
        1 gggcgatctg ttcgagcgat tccagcgccg cgcggtccag gcctacggcc ccatgggggt
       61 ggatccccgc ggttgcgaat atatttccgt tttctttcgc aagggcagcc gctttgcggc
      121 tggtttcgat actgatgccg ggaccgcgat ctgcaaggtc gtgatcaagg atcgcgaggc
      181 gctcgccgcg ctcgacccgt tcggcaagac catgctcatg accacgcttc actggccgga
      241 cgagatccgg gccacagacg agctcgacct cggcgacgag gagtacgact tcaagccggc
      301 cgagctggcg atggccaacc agctggtgtc ggcgatgacc ggtgagttcg acccggcgca
      361 gtacaaggac gagtaccgcg aggcgctcga ggccgtgatc gaggccaagg tcgagggcaa
      421 ggagaccgtc gaggtcgagg agcccgagga gaccggcaag ctgatcgacc tgatggccgc
      481 gctggaggcc tccgtcaacg ctgctaaggc gtcacgcgag aagccggtct cggtgtcgga
      541 ggcgaaggcc gccaaggccg cgaaggcggg tcgggcggcc gcgacggcca aggccaaggc
      601 cgaggaggac gccgacgagg tccccgcgaa gcccgctcgg aagcgcaaga cagcctgacc
      661 cggcggcagg gtgagctggt gaccggcgag caggcgagcg acgagcgcga cgtggtctac
      721 gttccgcgac aggcttatcg ccagttgctc gcgacaaacc ggcggagcct gatgctgggc
      781 tcgctggtcg ggatcatgag tctggtaggc ggctggttcc tcaatcggcc atcacccggc
      841 gggatctcac cgatcgtcat cctcttcgtc ctggtcggcg ttgcggcaat gggctggacc
      901 gtcgtcaccg gtcgtcgcca gtcggacctt ccaccccagg actggtacgg cggccccgga
      961 ccggatccca cccggatcga tctggtcccc gtggagcgga ctccgcgccc gcagctcgag
     1021 acgccaggtt ccttcctcgg agcgcccttc gacggaggcc cgggcggccc cgggccgagc
     1081 tgaccgacgt cccccgacgc gtcacgatgc ccctcgagga ataccggcgg aagcgcgact
     1141 tcagcagaac acccgagccg gcgccggccg ctcccaccgc ggccgccggc cgctcgcgtg
     1201 ggcgctacgt cgtccagcgg caccgggcga cccggctcca ctacgacttc agactagaga
     1261 tcgacggggt cctcgtatcg tgggccgtgc cgaagggccc gacgctcgac cccggcgtcc
     1321 gccggatggc cgtccacgtc gcggaccacc cgctcgagta cttcgacttc gagggagtca
     1381 tcccggccag gcagtacggc gcgggcgacg tcaccgtctg ggactggggg acctgggagc
     1441 cggaggccga gacgcccgac cccgcggccg cgatcgcgaa cggcgagctg aagttccgga
     1501 tcgacggcga gaagctcaag ggccggttca cgatcgtccg gacgagccgc cgcccgggcg
     1561 cggcgccgcg caccgcgttc gaggacgacg agggcgagca gtggctgctg atccacaagc
     1621 gtgacgcgga cgctgttccc ggctgggacg cggaggacca cccgcggagc gtcaagtccg
     1681 gccgcaccaa cgaccaggtc aaggccgacg ttcccgcgat ctgggtctcg gagatgccg
//
LOCUS       DATDDI010000935         2305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_707264, whole genome shotgun sequence.
ACCESSION   DATDDI010000935 DATDDI010000000
VERSION     DATDDI010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707264"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VIU37_13700"
     CDS             complement(<1..253)
                     /locus_tag="VIU37_13700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015063.1"
                     /translation="MLATTLRQPSLVPAVINYVQLELHRVLRNRRYLMTAAVFPVMFY
                     ALFTGVLRGGGADPTAGGGLAWKTYYMVSMAAYGAIGAAL"
     gene            complement(279..1244)
                     /locus_tag="VIU37_13705"
     CDS             complement(279..1244)
                     /locus_tag="VIU37_13705"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY6015064.1"
                     /translation="MNSSSISSPAIAARPSAQAGADRRGGPSAAVAFEGVSRSYGQVL
                     ALDGVDLVIPGGSTVALLGPNGAGKSTAIGLMLGLLHPDRGTVGVLGLPPRDAVEAGR
                     VGAMLQVGGLPVGVTVGEIVDFTRRLYPHPMTLERALALSGMTAFRRRRTEDLSGGET
                     QRLRFALAIAGDPELVFLDEPTVAMDVESRRGFWAEMRQFAAEGRTVLFATHYLEEAD
                     QVADRIVVLDRGRVVADGTAGSLKAGVAGRTIRFTLPYPDPAVLGALPGVTACDLHGD
                     DVTLRSSDTDATLRAIYAGDLPILDLEVTGADLETAFLALTRNDD"
     gene            1457..2164
                     /locus_tag="VIU37_13710"
     CDS             1457..2164
                     /locus_tag="VIU37_13710"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY6015065.1"
                     /translation="MPEDRAISRSVLAEQVKDRLLQDILSGVYPPDSRIVETRVARAL
                     GTSQAPVREALRGLEALGLVEIAPFRGARVRRPSGPELLEAYAVRSELEALGARLGVP
                     RMTDADLAELEALGEAMQEAAAAGDRHEVAVADARFHARLLTLSGNVTLERVWRSLEP
                     YSRTYITLLAPGSDAHWTADLHPSIVRALRTRDAEQVVLALRRHFDEAKAHLAGGWID
                     GLPAPAGNSREPSVRAG"
BASE COUNT          326 a          833 c          864 g          282 t
ORIGIN      
        1 ccagcgccgc gccgatcgcg ccgtaggccg ccatcgagac catgtagtac gtcttccagg
       61 cgagcccgcc gccggccgtc gggtcggcgc cgccgccccg gaggacgccg gtgaacaacg
      121 cgtagaacat gaccggaaag accgccgcgg tcatcaggta ccggcggttg cgcaggactc
      181 gatgcagctc gagctggaca tagttgatga cggccgggac gagcgacggc tgtcgcaggg
      241 tggtggcaag catcgggagc tcctcaacgg gttcgtggtc agtcgtcgtt gcgggtcagg
      301 gccaggaagg cagtctcgag atcggcgccc gtcacctcga ggtcgaggat gggcaggtcg
      361 ccggcgtaga tcgcccggag cgtcgcgtcc gtgtcgctcg aacggagcgt cacgtcatcg
      421 ccgtggaggt cgcaggcggt cacgccgggc agtgccccga ggaccgccgg atcggggtag
      481 ggcagggtga accggatggt ccgccccgcc acgccggcct tcagcgaacc ggcggtgccg
      541 tccgccacga cgcgtccacg gtcgagcacg acgatccggt cggcgacctg gtcggcctcc
      601 tccaggtaat gcgtcgcgaa caggacggtc cgaccctcgg cggcgaactg gcgcatctcg
      661 gcccagaagc cgcgccggga ctcgacgtcc atggccacgg tcggctcgtc gaggaacacg
      721 agctcgggat cgccggcgat cgccagcgcg aaccgcaggc gctgggtctc gccgcccgac
      781 aggtcctcgg tccggcggcg ccggaaggcg gtcatgcccg agagcgcgag cgcccgctcg
      841 agggtcattg ggtgtgggta gagccggcgc gtgaagtcga cgatctcgcc gacggtcacg
      901 ccgaccggca gcccgccgac ctggagcatg gcgcccacgc gaccggcctc gaccgcgtcg
      961 cgcggcggca ggccgagcac cccgacggta cccctgtccg ggtgcagcag gcccagcatc
     1021 aggccgatcg ccgtcgactt cccggcgccg ttcgggccga gcagggcgac ggtcgatccg
     1081 cccgggatga ccaggtcgac gccgtcgagg gcaaggacct ggccgtagga acgcgagacg
     1141 ccttcgaagg ccaccgcggc ggacggtccg ccgcgccggt cggcgccggc ctgcgcggag
     1201 ggacgggcgg cgatggccgg gctggagatg gatgaactgt tcatggctcg agtctcggcc
     1261 gggcccgctc gaggtggaag tcacggacgt cgcgaagcga ttgtgacgcc gctgccggcc
     1321 gtggccgtga tccatgtcat gcccgcggag cgacgccgga agggcgggtc ggccgtgcta
     1381 cactcccgcc cgcacggcga gggccgaccg gcaggcccgc gctcgactcg ccggcatcca
     1441 cgccgcagga gcatcgatgc ccgaggaccg cgccatctcg cggagcgtgc tggccgagca
     1501 ggtcaaggac cgcctcctcc aggacatcct ctccggcgtc tacccgcccg actcgcggat
     1561 cgtggagacc cgcgtggccc gcgccctcgg cacgagccag gcgcccgtgc gggaggccct
     1621 ccgcgggctg gaagccctcg gtctcgtcga gatcgccccg ttccgcgggg cgcgcgtccg
     1681 ccggccgagc gggccagagc tgctcgaggc ctacgcggtg cgctcggagc tcgaggcgct
     1741 gggtgcgaga ctcggggtgc cgcgcatgac ggacgccgac ctcgccgagc tcgaggccct
     1801 gggcgaggcc atgcaggagg cggccgccgc cggggaccgc cacgaggtgg ccgtggccga
     1861 cgcgcgcttc cacgcgcggc tgctcaccct gtctggcaac gtgaccctcg aacgcgtctg
     1921 gcgctccctg gaaccgtact cgcggaccta catcacgctg ctcgcccccg ggtcggacgc
     1981 gcactggacg gcggacctcc acccgtccat cgtcagggcg ctgcgcaccc gcgacgccga
     2041 gcaggtcgtc ctggcgctgc gccggcattt cgacgaggcg aaggcccacc tggccggtgg
     2101 ctggatcgac ggactcccgg caccggccgg gaactcgcgc gagccctcgg tccgagcggg
     2161 ctgacccgtc ggcaggcccg cgccgccgca ggcgccggcc tgggtcaggc gcgaccgagg
     2221 atgcgccgca cctggtccgc cacccgcggg gccgacaggc cgtagatctc gagcagggcg
     2281 tcgttggggc ccgattccgg gtaga
//
LOCUS       DATDDI010000936         1838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_415818, whole genome shotgun sequence.
ACCESSION   DATDDI010000936 DATDDI010000000
VERSION     DATDDI010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415818"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VIU37_13715"
     CDS             <1..516
                     /locus_tag="VIU37_13715"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY6015066.1"
                     /translation="RFEESLAVITDLIRTGRSDHAGQFVTARDAVLRPPARPDLPILV
                     AAKRPRLLELTARHADAWNLAWFGRPDERLARVRGELLAACARVGRDPATLSMTVGVT
                     VRYPTEGPPPAEPPTAPALAGTPEKIADGLAAHAAAGADHLIAALEPSTPATLAAFVG
                     AVNRYRADAGG"
     gene            complement(513..1295)
                     /locus_tag="VIU37_13720"
     CDS             complement(513..1295)
                     /locus_tag="VIU37_13720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015067.1"
                     /translation="MSTVAGRRRFGAVRHAVGTRLAVRAALVVILVAGGSAAPASAAT
                     KGFAIDLGTHNDFVAQTNFVQCVGASMQMMLNMIRPGADRSAATQRRLQALAREWSGP
                     APDGIERQGASVVGWTAGLNLLGVGPYALVGTDTLDEALLAAARAIRLTGKPVGLLMW
                     HGRHAWVMSGFRATTDPLAPGARVTSVIVEDPLYPFGSSTWGPSPSPGASISPATIGR
                     QFVPRHSSGRWLASPWSAELAGKYVLVVPTRQDPRPYAHQAI"
     gene            complement(1369..>1838)
                     /locus_tag="VIU37_13725"
     CDS             complement(1369..>1838)
                     /locus_tag="VIU37_13725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015068.1"
                     /translation="APGPPDWGLRLPPMPETLAGLPYYAYHPFGVERRRADLIRRVAA
                     RAAWFEAIVDLPLGDAYARLTSVAGIGPWTAAEVGVRALGDADAVSVGDFHLPNLVAF
                     ALAGEPRGTDARMLELLEPYRGRRAVAVRLLELGGIGAPRYGPRLALRRIEES"
BASE COUNT          240 a          730 c          666 g          202 t
ORIGIN      
        1 cggttcgagg aatcgctggc ggtcatcacc gacctgatcc ggacgggtcg atccgaccat
       61 gccgggcagt tcgtcaccgc ccgcgacgcg gtcctgcggc cgccggcgcg ccccgacctc
      121 ccgatcctgg tggcggccaa gcggccccgg ctgctcgagc tgacggcccg ccacgcggac
      181 gcctggaacc tggcctggtt cggacggccg gacgagcggc tggcgcgggt ccgcggcgag
      241 ctcctcgccg cctgcgcgcg ggtcggccgg gatcccgcga ccctgtcgat gacggtcggc
      301 gtcacggttc gctacccgac cgaaggtccg ccgccggccg agccgccgac ggcgccggcg
      361 ctggccggca cgcccgaaaa gatcgccgac gggctggccg cccacgccgc ggccggtgcc
      421 gaccacctca tcgccgcgct cgagccgagc acaccggcga cgctggccgc cttcgtcggg
      481 gccgtcaacc gctatcgcgc ggacgccggc ggctagatcg cctggtgcgc gtagggccgc
      541 gggtcctgcc gggtcgggac caccaggacg tacttgccgg cgagctccgc gctccacggc
      601 gacgcgagcc agcggccgga cgaatggcgc ggcacgaact ggcgcccgat cgtcgccggg
      661 ctgatcgagg cgcccgggct cgggctcgga ccccaggtac tcgagccgaa cgggtagagc
      721 ggatcctcga cgatgaccga cgtcacccgc gcgcctggcg cgagcgggtc ggtcgtggcc
      781 cggaagccgc tcatgaccca ggcgtgccgg ccgtgccaca tcagcagccc gaccggcttg
      841 ccggtcaggc ggatcgcgcg tgccgcggcg agcagcgcct cgtcgagcgt gtccgtcccg
      901 acgagcgcgt acggcccgac gccgagcagg ttgagcccgg cggtccagcc gaccacgctc
      961 gcgccctggc gctcgatccc gtccggcgca ggaccgctcc attcgcgcgc cagcgcctgc
     1021 agccggcgct gggtcgcggc cgagcggtcg gcaccgggcc ggatcatgtt gagcatcatc
     1081 tgcatgctcg cgcccacgca ctggacgaag ttggtctggg cgacgaagtc gttgtgcgtc
     1141 ccgaggtcga tcgcgaagcc cttcgtcgcc gcactcgccg gcgccgccga accgccggcc
     1201 accaggatga cgaccagggc cgcccgcacg gccaggcgcg tcccgaccgc atgcctgacc
     1261 gccccgaaac gccggcgccc cgccaccgtg ctcatggccg aaccatacga cgaaggcccc
     1321 gggcgggtca ttcgacggcc ggccgccggc ctccgaggcc caaccgacct agctctcctc
     1381 gatccgccgc aacgcgagcc gcgggccgta ccgcggcgcc ccgatcccgc cgagctcgag
     1441 cagccggacg gccaccgcgc gccggccgcg atacggctcg agcagctcga gcatccgggc
     1501 gtccgtcccg cgtggctcgc ccgcgagcgc gaaggcgacc aggttcggca ggtggaagtc
     1561 gccgacgctg accgcgtccg cgtcgccgag cgcccggacc ccgacctcgg ccgccgtcca
     1621 cggcccgatg ccggcgaccg acgtcagccg ggcgtaggcg tcgccgagcg gcaggtcgac
     1681 gatcgcctcg aaccaggccg cgcgagcggc gacccgccgg atcaggtcgg cccgccgccg
     1741 ctccacgccg aacgggtggt aggcgtagta ggggagcccg gcgagggtct cgggcatcgg
     1801 cggcagccgc aggccccaat ccggcggtcc cggcgccg
//
LOCUS       DATDDI010000937         1685 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_456745, whole genome shotgun sequence.
ACCESSION   DATDDI010000937 DATDDI010000000
VERSION     DATDDI010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456745"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VIU37_13730"
     CDS             <1..612
                     /locus_tag="VIU37_13730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015069.1"
                     /translation="DDDVLTALLVKGYCTPEAVATALLATPEAAAAALDRLTAAGLVE
                     TAIGSLRLTAEGKAAAHKAVERVAAGWGRAAAETALDAFVALDRRMKATVTAWQLREV
                     GGEQVVNDHADAAYDAGVLEDLALLHTDAAAWLEPLIPSVPRFAAYAARLGRAAAAAR
                     AGDGRFVASPRVDCYHGVWFELHEDLILHAGRTRADEVAAGRA"
     gene            complement(659..1615)
                     /locus_tag="VIU37_13735"
     CDS             complement(659..1615)
                     /locus_tag="VIU37_13735"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY6015070.1"
                     /translation="MIEAVSMMERVTPNVFTATRLRGCNPSFVTTSDGVVVVDTPQLP
                     TRAVAMRAEAESHGPIRYLINTEHHVDHIFGNYWFKGAGTVVNHLGLYERFMVVYPEL
                     DPFAYAYESVPGENAKGTDLDDPAALALWPDRDAYYRDPNKGTIVFTGDLTLHVGDHT
                     FNCLHTPGHTPGQLAVHVPEERVVFTGDTIFSGCQTWLMTSDVDQWLAALERIRTLDV
                     DWICPGHGPVVPKSYVDVQRAQLLRWKAAVADAIALGWTREETVARVDFRDEFGPVDI
                     GQGYMLDYIQSRNAAALYDKLSGGSPRLTAPDGSPAGTPQAR"
BASE COUNT          227 a          599 c          620 g          239 t
ORIGIN      
        1 gacgacgacg tcctgaccgc gctgctggtc aagggctact gcacgcccga agccgtcgcc
       61 acggctctgc tcgcgacccc ggaggcggcc gcggcggcgc tcgaccggct gacggcggcc
      121 gggctcgtcg agacggcgat cggctcgctc cgcctgaccg cggagggcaa ggccgcggcg
      181 cacaaggccg tcgagcgagt cgcggcaggc tggggccggg ccgcggcgga gaccgcgctc
      241 gacgcgttcg tggccctcga ccggcggatg aaggcgaccg tcaccgcctg gcagctgcga
      301 gaggtcggcg gcgagcaggt cgtcaacgac cacgccgacg cggcctacga cgccggcgtc
      361 ctcgaggatc tcgcgctact ccacacggac gccgccgcgt ggctggagcc gctgatcccg
      421 agcgtgccgc gcttcgccgc ctatgccgcg cgcctcgggc gggcagccgc cgcggcccgc
      481 gccggcgacg ggcgattcgt ggcctcgcca cgcgtcgact gctatcacgg cgtgtggttc
      541 gagctccacg aggacctcat cctccacgcc gggcggaccc gggcagacga ggtcgcggcg
      601 ggccgggcct gaatcatcgg gcgggcccgg cggcccgcgc cgcgcagcct ccgggcgatc
      661 agcgcgcctg gggtgtcccg gccgggctgc cgtcgggcgc ggtcagccgt gggctgccgc
      721 cggacagctt gtcgtacagg gccgcggcgt tgcgcgactg gatgtagtcg agcatgtagc
      781 cctggccgat gtcgaccggc ccgaactcgt cacggaagtc gacccgggcg accgtctcct
      841 cgcgggtcca acccagcgcg atcgcgtcgg ccacggcggc cttccagcgc agcagctggg
      901 cgcgctggac gtcgacgtac gacttcggca cgaccggccc gtggccgggg cagatccagt
      961 cgacgtcgag cgtgcggatc cgctccaggg ccgccagcca ctggtcgacg tcggacgtca
     1021 tcagccacgt ctggcagccg gagaagatcg tgtcgccggt gaagacgacc cgctcctcgg
     1081 gcacgtggac cgcgagctgg ccgggagtgt gcccgggggt gtgcaggcag ttgaacgtgt
     1141 ggtcgccgac gtggagcgtc aggtcgccgg tgaagacgat cgtgcccttg ttcgggtcgc
     1201 ggtagtacgc atcgcggtcc ggccagagcg cgagcgccgc ggggtcgtcg aggtccgtgc
     1261 ccttggcgtt ctcgccgggc accgactcgt aggcgtacgc gaacggatcg agctccgggt
     1321 agacgaccat gaaccgctcg tacagcccga ggtggttcac gaccgtgccc gcgcccttga
     1381 accagtagtt gccgaagatg tgatcgacgt ggtgctcggt gttgatgagg taccggatcg
     1441 ggccgtggga ctccgcctcc gcgcgcatcg ccaccgcccg cgtcggcagc tgcggggtgt
     1501 cgaccaccac gacgccgtcc gaggtggtca cgaagctcgg gttgcagccg cgcagcctcg
     1561 tggccgtaaa gacgttcggc gtcacgcgtt ccatcatcga gaccgcctcg atcatcgctc
     1621 gatcccttcg attccctact gcgtcgccgt cagcccgcca tcgatcccga ggacctggcc
     1681 ggtga
//
LOCUS       DATDDI010000938         3784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_581980, whole genome shotgun sequence.
ACCESSION   DATDDI010000938 DATDDI010000000
VERSION     DATDDI010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581980"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1117)
                     /locus_tag="VIU37_13740"
     CDS             complement(<1..1117)
                     /locus_tag="VIU37_13740"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY6015071.1"
                     /translation="MHLPIALDPPLVRRAGTAVAIALLVGACGPSASAASPTLSTAAI
                     AAPTTSTTAVIAAPPAPAAVRQVPASGGVAGRTFAPPLTAPATGGGRFPGGLLIADRG
                     NGRLLVVSSTGAPLWRFPTTGSLPRGQGFAADDAFLAPDGKSIVANDEGHHVIDRIDI
                     ATRRIVWQYGHYGTPGRGAGYLNTPDDAYPLANGNVVVADIRNCRVIEIAPSKQIVRQ
                     WGTTGRCVASAPHAYASPNGDTPLPDGGLLITEIHGSRVVRLSATGKVIFDIHVPVAY
                     PSDAHLDAQGNVIVADYSTIGAVVAVTPHGRLLWRYAPRSGNGRLNHPSLAVPMADGT
                     IVINDDFRARVVVLDPPTMRIVWQYGRTGVPGSGPNRL"
     gene            complement(1230..1544)
                     /locus_tag="VIU37_13745"
     CDS             complement(1230..1544)
                     /locus_tag="VIU37_13745"
                     /inference="COORDINATES: protein motif:HMM:NF021378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEY6015072.1"
                     /translation="MHYGGWYPFGDGWLIGLLVLGAFIVLIAWGIAWILRRDSPRYGA
                     PPPPAGYPPPVRPDSAIQILRERFARGEISEAEYLSASRVLGAPEPPGSGTGRPPGPP
                     AS"
     gene            1645..2127
                     /locus_tag="VIU37_13750"
     CDS             1645..2127
                     /locus_tag="VIU37_13750"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY6015073.1"
                     /translation="MARRTKAGVVSAGILLFRRSRGPLELLLAHQGGPYWTTKDLGHW
                     TIPKGEVEPDEAWIDVARREFAEETGFELEVHEDLPLGEIEQKSGKTVVAWAVEGDLD
                     PALAHSNTFSLEWPPRSGRLQDFPEIDRVEWFEVDEARRRLKAAQVPFIDRLEAAFGG
                     "
     gene            complement(2124..2453)
                     /locus_tag="VIU37_13755"
     CDS             complement(2124..2453)
                     /locus_tag="VIU37_13755"
                     /inference="COORDINATES: protein motif:HMM:NF016152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEY6015074.1"
                     /translation="MPTFGDVRRIALSLPESEEILTWETDITFRVRRKIFAIGGEGAT
                     RVSIKATPFVQEALIERDPETFGRAAYVGRFGWTTVDLERVEPDELERLLRDAWRMTA
                     PKKLAGP"
     gene            complement(2455..>3784)
                     /locus_tag="VIU37_13760"
     CDS             complement(2455..>3784)
                     /locus_tag="VIU37_13760"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY6015075.1"
                     /translation="AQPMWQRTPAPKRGELLYAFGALMAQHKERLARAMTREMGKVLA
                     EARGDVQEGIDIAFLMAGEGRRMAGETVPSELPDKWAMSIRQPLGIAGIITPWNFPIA
                     IPCWKMMPALVTGNTVVFKPSSDTPHCATLLVELLAEAGFPPGVVNLVTGTGAEVGNA
                     IVDNPDVAVVSFTGSSATGTGIAERAGRRLKRLSLELGGKNGVVVLADADLDLATDGI
                     LWSAFGTTGQRCTACSRVIVEQAVLDPLLRRLEARTRELRLGSGLDPDVDVGPLINAA
                     ALDKVASYVDIGRTEGELIVGGGRALDHHLATGHFYQPTIFSGVKPMDRIGQEEIFGP
                     VLSVIPVADYGSAVLALNQTRYGLSSSIFTQDVNRAFRAMRDFETGIVYVNAGTTGAE
                     THLPFGGWKGTGNGHREAGHVALDTYTEWKSIYVDFSGRLQRAQIDNQPG"
BASE COUNT          538 a         1332 c         1365 g          549 t
ORIGIN      
        1 agagccggtt gggcccgctg ccgggcacgc ccgtgcgccc gtactgccag acgatccgca
       61 tcgtcggcgg gtcgaggacg accacccgcg cccggaagtc gtcgttgatc acgatcgtgc
      121 cgtccgccat cgggacggcg aggctcgggt ggttcagccg gccgttgccc gaccgcggcg
      181 cgtaccgcca cagcagacgg ccgtgcgggg tcaccgccac caccgcgccg atcgtgctgt
      241 agtcggcgac gatcacgttc ccctgggcat cgagatgggc gtcggacggg tatgccaccg
      301 gaacgtggat gtcgaagatc accttgccgg ttgccgacag ccgcaccacg cgcgagccgt
      361 ggatctcggt gatgaggagg ccgccgtcgg gcagcggcgt gtcgccgttc ggggaggcgt
      421 aggcatgggg cgccgaggcg acgcacctgc ccgtcgtccc ccactgccgc acgatctgct
      481 tgctcggcgc gatctcgatc acgcggcagt tgcggatgtc ggcgacgacg acgttgccgt
      541 tggccagcgg atacgcgtcg tccggggtat tgaggtagcc ggctccgcgt ccgggtgtgc
      601 cgtagtggcc gtactgccac acgatcctcc gcgtcgcgat gtcgatccgg tcgatgacat
      661 ggtggccctc gtcgttggcg acgatcgact tgccgtccgg cgcgaggaac gcgtcatccg
      721 ccgcgaagcc ctggccccgc ggcaggctgc cggtcgttgg gaagcgccac agcggggcgc
      781 cggtcgatga cacgaccagg agccggccgt tcccccgatc ggcgatgagc aggccgccgg
      841 ggaaccggcc gccgccggtg gccggggccg tgagcggcgg cgcgaacgtc cgtcccgcga
      901 cgccgccgga cgcggggacc tggcggaccg ccgcgggtgc cggcggcgcc gcgatcacgg
      961 ccgtcgtcga ggttgtcggc gcggcgatcg cggccgtgga aagggtcggc gacgccgcgc
     1021 ttgccgacgg cccgcaggcg ccgaccagca acgcgatcgc gacggccgtt ccggcgcggc
     1081 gaaccagtgg gggatccagg gcgatcggca ggtgcatgcc cgcaccctag ccagccgatc
     1141 gaagccgcgg gcgcaccctg aacgaacctt taccgaaagc gatccgcttc gttatcgagc
     1201 gcgcgcccgg cgggacgtga cgcctcgggt cagctcgcag gcggccccgg cggtcgtccc
     1261 gtccccgaac ccggcggctc tggcgccccg agcacccggc tggcgctcag gtactcggcc
     1321 tcactgatct cgccgcgggc gaaccgctcg cgcaggatct ggatcgccga gtccggccgg
     1381 acgggcggcg ggtacccggc gggcggcggt ggcgcgccgt agcgcgggga gtcgcggcgg
     1441 aggatccagg cgatccccca cgcgatgagc acgatgaacg cgccgaggac gagcaggccg
     1501 atcagccagc cgtcaccgaa tggataccaa ccgccgtagt gcatggtcct ctcctgatgg
     1561 tcggagacga gcgtacgccg gaatcgttgc gcgatcctga aactcgaggt gcgtcggtgg
     1621 gtcgccccgc ggtaccctcg cgccatggct cgccgaacca aggccggcgt cgtcagtgcc
     1681 gggatcctgc tctttcgccg ctcccgtgga ccgctcgagc tccttctcgc ccaccagggc
     1741 ggcccgtact ggacgaccaa ggacctcggc cactggacga tcccgaaggg cgaggtcgag
     1801 cccgacgagg cgtggatcga cgtggcccgc cgcgagttcg cggaggagac cgggttcgag
     1861 ctcgaggtcc acgaggacct gccgctcggc gagatcgagc agaagtccgg caagacggtg
     1921 gtcgcctggg ccgtcgaagg ggacctcgac ccggcgctgg cccacagcaa caccttctcg
     1981 ctcgaatggc cgccccggtc cggccgcctc caggacttcc ccgagatcga tcgggtcgag
     2041 tggttcgagg tcgacgaagc ccggcgacgc ctcaaggccg cgcaggtgcc cttcatcgat
     2101 cggctcgagg ccgcgttcgg cggttagggc ccggccagct tcttcggggc cgtcatccgc
     2161 caggcgtcgc gcaggaggcg ctcgagctca tcgggctcga cacgctcgag atccacggtg
     2221 gtccagccga accggcccac gtacgcggct cgtccgaacg tctcgggatc tcgctcgatc
     2281 agggcctcct gcacgaacgg ggttgccttg atcgagaccc gcgtggcccc ctcgccgccg
     2341 atggcgaaga tcttcctgcg cacgcggaac gtgatgtcgg tttcccaggt caggatctct
     2401 tcgctctcgg gcagcgacag cgcgatccgg cggacgtcgc cgaacgtcgg cacgtcagcc
     2461 cggctggttg tcgatctggg cgcgctgcag ccgcccgctg aagtcgacgt agatcgactt
     2521 ccactcggtg tacgtgtcga gcgccacgtg cccggcctcg cgatggccgt tgccggtccc
     2581 cttccagccg ccgaacggca ggtgcgtctc ggcgccggtc gtcccggcgt tgacgtagac
     2641 gatcccggtt tcgaagtccc gcatcgcacg gaaggcgcgg ttcacatcct gggtgaagat
     2701 gctcgacgag aggccgtagc gggtctggtt gagggcgagc accgccgatc cgtagtcggc
     2761 gaccgggatc accgacagca ccggcccgaa gatctcctcc tggccgatcc ggtccatcgg
     2821 cttgacaccc gagaagatcg tcggctggta gaagtggccg gtggccaggt ggtggtcgag
     2881 ggcgcggccg cctcccacga tgagctcgcc ttccgtgcgg ccgatgtcga cgtacgacgc
     2941 caccttgtcc agcgccgctg cgttgatgag cggcccgacg tcgacgtcgg ggtcgagccc
     3001 cgagccgagc cgcagctcgc gcgtccgggc ttcgagccgc cggaggagcg gatcgaggac
     3061 cgcctgctcc acgatcaccc gcgagcacgc cgtacagcgc tggccggtgg tcccgaacgc
     3121 ggaccagagg atgccgtcgg tggcaaggtc gaggtcggcg tccgcgagga cgaccacgcc
     3181 gttcttgccg ccgagctcga gcgacaggcg cttgaggcgc cgccccgcac gctcggcgat
     3241 cccggtgccg gtggcggagc tgcccgtgaa cgacacgacc gcgacgtcgg ggttgtccac
     3301 gatcgcgttc ccgacctcgg ccccggtgcc ggtgaccagg ttgaccacgc caggcgggaa
     3361 gccggcctcg gccagcagct cgaccaggag cgtggcgcag tgcggcgtgt ccgacgacgg
     3421 cttgaagacg acggtgttgc cggtcacgag ggccggcatc atcttccagc agggaatggc
     3481 gatcgggaag ttccagggcg tgatgatccc ggcgatcccg agcggctggc ggatgctcat
     3541 cgcccacttg tccggcagct cggacggcac ggtctcaccg gccattcgtc gcccctcgcc
     3601 ggccatgagg aacgcgatgt cgatcccttc ctggacgtcg ccgcgcgcct cggccaggac
     3661 cttgcccatc tcgcgggtca tcgcgcgggc caggcgctcc ttgtgctggg ccatcagcgc
     3721 cccgaaggcg tacaggagct cgccgcgctt gggcgccggg gtgcgctgcc acatcggctg
     3781 ggcc
//
LOCUS       DATDDI010000939         2358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_415869, whole genome shotgun sequence.
ACCESSION   DATDDI010000939 DATDDI010000000
VERSION     DATDDI010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415869"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2358)
                     /locus_tag="VIU37_13765"
     CDS             complement(<1..>2358)
                     /locus_tag="VIU37_13765"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HEY6015076.1"
                     /translation="AINRINQLRRSGELALYTPHFNSRTSSVASGVDIIVSGVALPIR
                     TSGTWTGTVQQTRIADGGGPIDPGAVVITVPSTSPLVNLQPGEQVTITTTVTPGWESV
                     TQAVGGREWIVRDGAPYISPHPASADEIHPRSAVGLTADGRLILATVDGRESGVSEGV
                     RLTELAELMMERGAVQAINLDGGGSSTLVVRRAGTETPVIVNKPSDGVERPVTNSIQV
                     VSTMPTGPLATLNVKPAARKVYRNTTIDFTASGMDAGYNPVPIGAGQLAWSLTAPVGT
                     IDANGHFVATSPGTAQVVATVNGTAASGQVGASQAVTGTAPITVLSDTTAPVAKAPRV
                     TLPVGRGIGAGGVPVTVTWDAATDSGSGVASYELQRSVDGHAWTTMPKASPTARTTSL
                     TLPRNRTYQFQVRAVDVAGNVGAWAAAGTFKLTVSQETSRSLSFVRGTWSRTSSVSYD
                     GHGARSTRTTGAIARFKFTGTGFAWVAAVSPVRGRAQVWIDGTLSGTVDTHRPASAAR
                     LMVFTRSTMSSGHHTIEIRALGTAGHPRVDIDALVTMSPVASRTPPPSPTPTPAPSPT
                     PSPTPTPGPSPTPSPAPTPTPTGSEAVLVGAGDIASCGLTADTATAKLVAGIAGTVFA
                     AGDEAYESGSAAEFKNCYAPTWGPFLDRTYPVPGNHEYVTSGAAGYFNYFGARAGAAG
                     AGWYAYDLGTWRIYALNSNCAVVGCDAGSAQETWLRDDLAANPRACVLAYWHHPRFSS
                     GQHGNDSEVAALWNDLYAAGADVIVNGHDHDYERFAPQAPSGKAD"
BASE COUNT          297 a          821 c          894 g          346 t
ORIGIN      
        1 cgtccgcctt gccgctcggc gcctgtgggg cgaaccgctc gtagtcgtgg tcgtgcccgt
       61 tgacgatgac gtccgccccg gccgcataca ggtcgttcca gagcgccgcg acctcggagt
      121 cgttgccgtg ctggccggag ctgaagcgcg gatggtgcca gtacgcgagc acgcaggcgc
      181 gagggttggc ggcgaggtcg tcgcgaagcc atgtctcctg ggccgatccc gcgtcacagc
      241 cgacgaccgc gcagttggaa ttgagtgcgt agatccgcca cgtgcccagg tcgtaggcat
      301 accagcccgc cccggccgcg ccggcccgcg ccccgaagta gttgaagtag ccggccgcgc
      361 ccgaggtcac gtactcgtgg ttgccgggaa ccgggtaggt ccggtcgagg aaggggcccc
      421 acgtcggcgc gtagcagttc ttgaactcgg cggccgagcc gctctcgtag gcttcgtcac
      481 cggccgcgaa gaccgtcccg gcgatcccgg cgacgagctt cgccgtggcg gtgtccgcgg
      541 tcaggccgca cgaggcgata tcgcccgcgc cgaccagcac ggcctcggag ccggtcgggg
      601 tcggggtcgg cgccggcgac ggggtcggcg aggggcccgg cgtgggggtc ggcgatgggg
      661 tcggcgaggg ggccggggtc ggggtgggcg agggcggcgg ggtgcggctc gcgaccgggc
      721 tcatcgtgac gagcgcgtcg atgtcgacgc gtggatgacc ggcggtgccg agcgcccgga
      781 tctcgatcgt gtggtggccg ctcgacatcg tcgatcgggt gaagaccatc agccgtgcgg
      841 ccgaggccgg tcggtgggtg tccaccgtgc ccgacagcgt cccgtcgatc cagacctggg
      901 cccggccgcg gaccgggctg accgcggcga cccaggcgaa gcccgtaccg gtgaacttga
      961 agcgggcgat cgcgccggtc gtccgggtcg agcgcgcgcc gtggccgtcg tacgacaccg
     1021 agctcgtccg gctccacgtc ccgcgcacga acgacagcga gcggctcgtc tcctgcgaga
     1081 cggtcagctt gaacgtcccc gccgctgccc acgcgccgac gttgccggcg acgtccacgg
     1141 cgcgaacctg gaactggtac gtccggttgc gcggcagggt cagcgacgtc gtccgggccg
     1201 tcggcgacgc cttgggcatc gtcgtccagg cgtgaccgtc cacgctccgc tgcagctcgt
     1261 acgacgcgac cccggagcct gagtcggtgg ccgcgtccca ggtcacggtc acgggcaccc
     1321 caccggcgcc gatcccgcgc ccgaccggca gcgtcacccg gggcgccttg gcgaccggcg
     1381 cagtcgtgtc ggacaggacg gtgatcggcg ccgtgccggt gaccgcctgg ctggcgccga
     1441 cctggccgct cgccgccgtt ccgttgacgg tggcgacgac ctgcgccgtg cccgggctgg
     1501 tcgccacgaa gtgcccgttg gcgtcgatcg tcccgaccgg agcggtcagc gaccaggcca
     1561 gctggccggc gccgatcggc accgggttat agccggcgtc cattcccgac gcggtgaagt
     1621 cgatggtcgt gttcctgtag accttgcgtg ccgccggctt gacgttcagc gtggcgagcg
     1681 gaccggtcgg catcgtgctg acgacctgga tgctgttggt gaccggccgc tcgacgccgt
     1741 cggagggctt gttgacgatc accggcgtct cggtcccggc ccgccggacg accagcgtcg
     1801 aggagccgcc cccgtcgagg ttgatcgcct ggaccgcgcc gcgctccatc atcagctcgg
     1861 ccagctcggt gagccgcaca ccctcgctga cgccagactc gcgaccgtcg accgtggcca
     1921 ggatgaggcg cccgtccgcg gtcaggccga ccgcgctgcg cgggtggatc tcgtcggcgc
     1981 tggccgggtg cggcgagatg tacggcgcgc cgtcgcggac gatccattcg cgaccgccga
     2041 ccgcctgggt gaccgactcc cagccgggcg tcacggtcgt cgtgatggtg acctgctcgc
     2101 cgggctgcag gttgacgagc ggagaggtcg acgggacggt gatgacgacg gcgccgggat
     2161 cgatcgggcc cccaccgtcg gcgatccgcg tctgctggac cgtcccggtc caggtgcccg
     2221 acgtccggat cggcagggcg actccggaga cgatgatgtc gacgccggac gcgacgctgc
     2281 tcgtccggct gttgaagtgc ggcgtgtaca gcgccagctc cccggatcgc cggagctggt
     2341 tgatccggtt gatggcga
//
LOCUS       DATDDI010000940         1889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_20458, whole genome shotgun sequence.
ACCESSION   DATDDI010000940 DATDDI010000000
VERSION     DATDDI010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20458"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VIU37_13770"
     CDS             <1..205
                     /locus_tag="VIU37_13770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1998 domain-containing protein"
                     /protein_id="HEY6015077.1"
                     /translation="VGLSERLWNRHDELLAGAADLIGACACEAGCPACTGPRLEPHVD
                     AKALALRLLGDLGAPVASPAAAR"
     gene            202..1593
                     /locus_tag="VIU37_13775"
     CDS             202..1593
                     /locus_tag="VIU37_13775"
                     /inference="COORDINATES: protein motif:HMM:NF024873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HEY6015078.1"
                     /translation="MIDGGATLARRLERYRAAARTLTASDDPPPTSTPSAWLAEQLAA
                     ATAGEVVTTTEGIVVRCEPPSRTIPVDRERLARLPGQPPPTAPLVCLDTETTGLATAA
                     GTVAFLIGLGWWEGDRFRQVQLLLPDHAHERALLTALAATIAPTAWLVTYNGRGFDWP
                     LLVARFRLARRSAPVHAGHLDLLPIVRRLFRHRMDDARLRTAEAQLLGLHRIGDVDGW
                     EIPGRYLRFLRTGLPDELVEVVRHNDQDVRSLAWLLAHLEVELGDPGRRFEAPAGDLA
                     GLARAFAREHRLGEALACLDHAAARAETIVPGGDPGTGGSPSRHGEEPWWSPKARPDY
                     GGRPQRVAEGLGPPRTAAFHLPWSQERIAIDRAHLLRRLGRHAEAAEAWESLAAGVGR
                     SAIVASIELAKVHEHRLRDPEAATRATLRGLAIVERRRLLGRPEPALEADLLRRLRRL
                     RQRSSIAGRRSVA"
     gene            complement(1590..>1889)
                     /locus_tag="VIU37_13780"
     CDS             complement(1590..>1889)
                     /locus_tag="VIU37_13780"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY6015079.1"
                     /translation="IRVADAGGRWRYAAQPADAEVDPTGAGDTFLGTLVASSVRPSLA
                     GGGKPSVARDLAFAAAAASLVIEGPGLLGVPDRAAVAARSRRGVPGWLEPSDTAD"
BASE COUNT          233 a          733 c          693 g          230 t
ORIGIN      
        1 cgtcggcttg tccgagcgac tgtggaaccg ccacgacgag ctcctggccg gcgcggccga
       61 cctgatcggc gcctgcgcct gcgaggccgg ctgcccggcc tgcaccggtc cacggctgga
      121 gccccacgtc gacgccaagg cgctcgccct gcgactgctc ggcgatcttg gcgccccggt
      181 cgcgagcccg gcagcggcgc gatgatcgac ggcggcgcga cgctcgcccg ccggctcgag
      241 cgataccgcg cggccgcgcg gacgctcacc gcaagcgacg acccgccgcc gacgagcacg
      301 ccgagcgcct ggctcgccga gcagctcgcg gcagccaccg cgggcgaggt ggtgacgacg
      361 accgagggga tcgtcgtccg gtgcgagccg ccgtcgcgca cgatcccggt cgaccgtgag
      421 cgcctggcga ggctgcccgg tcagccgccc ccgacggcac cgctcgtctg cctcgatacg
      481 gaaaccacgg gcctggcgac cgccgcgggt acggtcgcgt tcctgatcgg cctcggctgg
      541 tgggagggcg accggttccg gcaggtccag ctcctgctgc ccgaccacgc ccacgagcgc
      601 gccctgctca cggcgctcgc ggcgacgatc gcccccaccg cctggctggt gacgtacaac
      661 ggccgcgggt tcgactggcc gttgctcgtc gcgcggttcc ggctcgcacg gcgctccgcc
      721 cccgtccacg ccggccatct cgacctgctc ccgatcgtac ggcgcctgtt ccggcaccgg
      781 atggacgacg cgaggctccg gacggccgaa gcgcagctcc tcgggctcca tcgcatcggc
      841 gacgtcgacg gctgggagat cccgggccgc tacctgcgat tcctgcggac cgggctgccg
      901 gacgagctgg tcgaggtggt ccgccacaac gaccaggacg ttcgatcgct cgcctggctc
      961 ctcgcgcatc tcgaggtcga gctcggcgac ccgggccggc ggttcgaggc accggcgggc
     1021 gacctcgccg gattggcccg tgcattcgcc cgcgagcatc gactgggcga ggcgctcgcc
     1081 tgcctcgacc acgccgccgc gcgtgccgag acgatcgtcc ccggcggcga ccctggaacc
     1141 ggcgggagcc cgtcgcggca tggcgaggag ccctggtggt cgccgaaggc gcgccccgat
     1201 tacggcggcc ggccgcagcg ggtggctgag ggcctcggtc cgccacgaac cgccgccttc
     1261 catctcccgt ggagccagga gcggatcgcc atcgatcggg cgcacctgct ccgccggctg
     1321 ggccggcatg ccgaggccgc cgaggcgtgg gaatcgctgg ccgccggcgt cggacgctcc
     1381 gcgatcgtgg cgagcatcga gctggcgaag gtgcacgaac accggctgcg cgatccggag
     1441 gcggccacgc gggccacgct tcgaggtctc gccatcgtcg agcgacggag actgctgggc
     1501 cggccggaac cggccctcga ggcggacctc ctccggcggt tgcggcgcct gcggcagcgg
     1561 tcgtcgatcg ccggacgccg gtcagtggcc tagtcggccg tatcggacgg ctcgagccag
     1621 cccgggaccc cgcgccggct gcgagcggcc accgccgccc ggtcggggac gcccagcagc
     1681 cccggtccct cgatcacgag cgacgccgct gcggcggcga aggcgaggtc tcgcgcgacc
     1741 gacggtttcc cgccacccgc gagcgacggg cgcacggacg aggcaaccag cgtcccgagg
     1801 aaggtgtccc ccgctccggt ggggtcgacc tcggcatcgg cgggctgcgc cgcatagcgc
     1861 catctgccgc cggcgtctgc cacgcgaat
//
LOCUS       DATDDI010000941         2349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_707457, whole genome shotgun sequence.
ACCESSION   DATDDI010000941 DATDDI010000000
VERSION     DATDDI010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707457"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(345..1022)
                     /locus_tag="VIU37_13785"
     CDS             complement(345..1022)
                     /locus_tag="VIU37_13785"
                     /inference="COORDINATES: protein motif:HMM:NF018184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HEY6015080.1"
                     /translation="MHASKDSCRHVPIADRSAGAVDAVFERPADRDAEVRGAPGVVRF
                     LELPVRRCVMIDGEGAPGEAAFTPRMPGLYTTAWSLRFAIKRRGVVTKVGPLEGLWWT
                     TDEATYLDAIFREERGSWRWILFIALPDEAADAEIETALAAGRAKLQPPFAASLRVEP
                     FDEGRVAQLLHVGPYAAERSSIERLHAAVAAAGLRLRGRHHEIYLGNPQTSAPERLRT
                     ILRQPVA"
     gene            complement(1131..1637)
                     /locus_tag="VIU37_13790"
     CDS             complement(1131..1637)
                     /locus_tag="VIU37_13790"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY6015081.1"
                     /translation="MTTKTVEATLDGDGLRLVARTGSGHTIVMDNAEGDTGARPAELL
                     VVAQAGCTAMDVVSILRKKRQPFTRYEVRVAAEQRDDPPPHVFVQLRVLHVIEGDVEI
                     EAVRRAIELSATRYCTVTGNLASGVAEVRHAYLIRDGAGGEYYGEVVVTGPLEDPSAL
                     GSRAQHQA"
     gene            complement(1642..>2349)
                     /locus_tag="VIU37_13795"
     CDS             complement(1642..>2349)
                     /locus_tag="VIU37_13795"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HEY6015082.1"
                     /translation="IAIAGMPYKCPPAPLEVSFLIEAELRQRGLRQKSEVHFCSPIGR
                     AFTIESVSEMATPIFEQKGIEVHTFFNVESIDAERHVIQSLEGEELPYDLLILVPPHK
                     GQQFLIDSGLAPAPGGWLPTDRATLQVGGRPNVFALGDATDLPLSKAGSTAHFEAPVV
                     TERIAAAIEGRAPDRKHGDYLGKVMCFFEIGDGKGTLLQFDYEHPPRPPKPNQLWHLG
                     KIVFNKTYWHTVPKGRV"
BASE COUNT          337 a          824 c          843 g          345 t
ORIGIN      
        1 acgaccacga tcgggtcgat cgtcatgacg tcggcgacaa ggagctgctt cgtgtccatg
       61 gtggcctccg ccaacacgat ctcgattgcg gcgacggagt tgaagagcca aatgtcccga
      121 ctctcggcgt tgccgggcac gaggcacgga atcggccgcg cgtcccgtgc aaacggtcca
      181 ttcggcccat caccgggtcg ccccggtcgg ccaagcttcg ggtgtcgggc gaccgtcacg
      241 ggtcacagag gtggcggtcc cttccccgac gcctcagccg cgcccgggtc cccaaccctg
      301 ggcgcggcgc ctttgtgggc ggtcgccgac cccgcgggag cgcgtcaggc gacgggctgg
      361 cggaggatcg tccgcaaccg ttccggggcg ctcgtctggg gattgcccag gtagatctcg
      421 tggtgccggc cgcgcagccg gagcccggcc gcggccaccg cggcatgcag ccgctcgatc
      481 gacgaccgtt cggcagcgta cggcccgacg tggagcagct gggccacccg gccctcgtcg
      541 aacggctcga cgcgaagact cgcggcgaac ggcggctgga gcttcgctcg acccgcggcc
      601 agcgccgtct cgatctccgc atcggcggcc tcgtcgggca gggcgatgaa caggatccag
      661 cgccaggacc cgcgctcctc gcggaagatc gcgtcgagat aggtggcctc gtcggtggtc
      721 caccacaggc cctcgagcgg gccgaccttg gtgacgacgc cccgccgctt gatggcgaac
      781 cggagcgacc aggccgtcgt gtagaggccc ggcatgcgcg gggtgaacgc ggcctcgccc
      841 ggcgccccct cgccgtcgat catcacgcag cgtcgcaccg ggagctcgag gaagcggacc
      901 acgccgggcg cgccgcgaac ctccgcgtcc cggtcggccg gccgttcgaa gaccgcgtca
      961 acggctccgg cggaccggtc ggcgatcggg acgtggcgac aggaatcctt cgaggcgtgc
     1021 atgcgcacgc gatacatcca gcggcgccgg ccgcgacagg tccaaagcgg ccataccggc
     1081 gggccgaccg gcccgatcgg gccgctggcc gccgcaccgc gccgtgggcg tcaggcctgg
     1141 tgctgcgccc tcgagccgag cgcgctggga tcctcgagcg ggccggtgac gacgacctcg
     1201 ccgtagtact ccccgccggc gccgtctcgg atgaggtagg cgtgccggac ctcggccacg
     1261 ccggaggcca ggttgccggt caccgtgcag taccgggtgg ccgacagctc gatcgcccgt
     1321 cgaacggcct cgatctcgac gtcgccctcg atcacgtgga gcacgcgcag ctgcacgaac
     1381 acgtgcggtg gcgggtcgtc gcgctgttcg gcggccacac ggacctcata gcgagtgaac
     1441 ggctggcgct tcttgcggag gatggacacc acgtccatcg ccgtgcatcc ggcctgggcg
     1501 acgaccagca gctcggccgg tcgggcgccc gtgtcgcctt cggcgttgtc catcacgatc
     1561 gtgtggccgc tgccggtgcg agcgaccaac cgcaggccgt ccccgtcgag cgtcgcctcg
     1621 accgtcttgg tcgtcacggc atcagacccg acccttcggc acggtgtgcc agtacgtctt
     1681 gttgaagacg atcttgccca ggtgccacag ctggttcggc ttcggcgggc ggggcggatg
     1741 ctcgtagtcg aactggagca gggtgccctt gccgtcgccg atctcgaaga agcacatgac
     1801 cttgccgaga tagtcgccgt gcttgcgatc gggggcccgg ccctcgatcg cggcggcgat
     1861 ccgctcggtc acgaccggcg cctcgaagtg ggcggtcgag ccggccttgg agagcggcag
     1921 gtccgtcgcg tcgcccaggg cgaagacgtt cgggcggcca cccacctgga gcgtggcccg
     1981 gtcggtcggc agccagccgc ccggtgccgg ggcgagcccg gagtcgatga ggaactgctg
     2041 gcccttgtgc ggcggaacca ggatcaggag gtcgtacggc agctcttcgc cttcgaggct
     2101 ctggatcacg tgccgctcgg cgtcgatcga ctcgacgttg aagaacgtgt ggacctcgat
     2161 ccccttctgc tcgaagatcg gggtggccat ctccgacacg ctctcgatcg tgaacgcacg
     2221 accgatcggc gagcagaaat ggacctcgct cttctggcgc agcccgcgct ggcggagctc
     2281 ggcctcgatc aggaacgaga cctcgagcgg ggcgggcggg cacttgtacg gcatgccggc
     2341 gatggcgat
//
LOCUS       DATDDI010000942         2645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_374452, whole genome shotgun sequence.
ACCESSION   DATDDI010000942 DATDDI010000000
VERSION     DATDDI010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374452"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VIU37_13800"
     CDS             <1..696
                     /locus_tag="VIU37_13800"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6015083.1"
                     /translation="LIDIGTGTGQLALGALARWSQVSIVGVDASAGMRAVADANAERQ
                     LDDEARSRFRSAVAFADDLPFADGSFDLALSSFVFQLVPSRARALREARRVLRPGGTL
                     AYVSWLQDDRAFEPDVIFDDVLDDLGIGAREPDGRSGDLPSVERAAAELRRAGFAGVT
                     AEAGRLEHRFTVASYIGFLSKFDEESLFEELEPGLRRQVLTELERRLARLSAGQMTLR
                     FPIVFASGRRSGA"
     gene            complement(718..1395)
                     /locus_tag="VIU37_13805"
     CDS             complement(718..1395)
                     /locus_tag="VIU37_13805"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HEY6015084.1"
                     /translation="MSTARATLAAEHRDLTGKKVASMRHAGRLPAVVYGHGVESANVS
                     IDTHEFEQLRRHTGPNALVDLSIDGKKPRPVLIHGVQVHPVNRRPLHVDLFLVRMTEE
                     LTVDVPLVATGESIAVTQHGGTLLHPIESVRVRALPDHLPQVIEYSVESILDFDTALH
                     VRDLVVPGDVTLLTDGEEIIAKVQPPRVEEEPVVVEAAEGEAAEGEAAEGGAAPTEGG
                     SAEAGEG"
     gene            1553..2251
                     /locus_tag="VIU37_13810"
     CDS             1553..2251
                     /locus_tag="VIU37_13810"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY6015085.1"
                     /translation="MSATILIVEDEHAVARGIQYALQQEGYEVAIARSGEEGLDIATH
                     QAPDLVVLDVRLPGIDGLEVLRRLRASGAKMPVLVLTARDDEVDKVIGLELGADDYLT
                     KPFGLRELMSRIKALLRRSYGDLSDAAGGRVIRHGDLLIDLERRRVQRGTRRISLTPT
                     EFEILRHLASRPGRVYTRSELLELLRDYEALDQDEKTINVHVSHLRDKIEDDPTSPAF
                     VLTVRGVGYAFAER"
     gene            2358..>2645
                     /locus_tag="VIU37_13815"
     CDS             2358..>2645
                     /locus_tag="VIU37_13815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015086.1"
                     /translation="MAFIGVIALVLVLVTVLVLNRLDDYFSRQQTTDLEQRSQTVSSY
                     VQSLARGAANGQPVVGVDNVVNPAVVAALSDRDQQRVIADRLGQADVTIQFG"
BASE COUNT          351 a          939 c          962 g          393 t
ORIGIN      
        1 ctgatcgata tcggcacggg gaccggccag ctggcactcg gcgcgctcgc ccggtggtcg
       61 caggtctcga tcgtcggcgt ggacgcgtcg gccggcatgc gcgcggtggc cgacgccaac
      121 gccgaacgtc agctcgacga cgaggctcgg tcgcggttcc gttccgccgt cgcctttgcc
      181 gacgacctgc cgttcgcgga cggctcgttt gacctcgccc tgtcgtcgtt cgtcttccag
      241 cttgtcccca gccgggcgcg ggcgctgcgg gaggcccggc gcgtgctgcg tcccggtggc
      301 acgctcgcgt atgtctcgtg gctccaggac gaccgtgcgt tcgagcccga cgtgatcttc
      361 gacgacgtgc tcgacgatct cggaatcggt gctcgcgagc ctgacggccg gtccggcgac
      421 ctgccctcgg tcgaacgcgc ggccgcggag ctccggcggg ccggtttcgc gggggtcacg
      481 gcggaggcgg gacggctcga acaccggttc acggtcgcgt cctacatcgg gttcctgtcg
      541 aagttcgacg aggagagcct gttcgaggag ctcgagcccg gcctgcgtcg gcaggtcctg
      601 accgagctcg aacgacgcct ggcccggttg tcggccggcc agatgacgct gcgcttcccg
      661 atcgtcttcg cgtccgggcg ccgatccggc gcctgagccc gaacccgggc ccgggggtca
      721 gccctcgccg gcctcggcgg atccaccctc ggtcggagcg gcgccgccct cggcggcctc
      781 gccctcggcg gcctcgccct cggcggcctc cacgacgacg ggctcctcct cgacgcgggg
      841 cggctggacc ttggcgatga tctcctcacc gtcggtcagc agcgtgacgt cgcccgggac
      901 gaccaggtcg cggacgtgga gggccgtatc gaagtcgagg atcgactcga cggagtactc
      961 gatgacctgc ggcaggtggt cgggcagcgc gcggacgcga acggactcga tcggatggag
     1021 gagcgtcccg ccgtgctgcg tgaccgcgat cgactcgccc gtggcgacga gcggcacgtc
     1081 cacggtcagc tcctcggtca tgcggacgag gaacaggtcg acgtggagcg gccgccggtt
     1141 gaccgggtgg acctggacgc cgtggatgag gacgggccgc ggcttcttgc cgtcgatcga
     1201 caggtcgacc agcgcgttcg gcccggtgtg ccggcggagc tgctcgaact cgtgcgtgtc
     1261 gatggagacg ttggccgact cgacgccatg gccgtagacg accgccggga ggcggccggc
     1321 gtggcgcatc gaggcgacct tcttgccggt caggtcgcgg tgttcggccg caagcgtcgc
     1381 gcgggcggtg gacatgatgg ggaacctctg atggttgtcg tgttcggtgc cgggccgcgg
     1441 ctcgccggcg gggccggaaa aggcgaggcg cccggaagca cgcgtacctt accacgaggg
     1501 ggcccctcga cccagagcgg tgccgtcgga ggccgcggtg tagcatcgcg gcgtgtccgc
     1561 caccatcctg atcgtcgaag acgagcacgc cgtcgcacgg ggcatccagt acgcgctcca
     1621 acaggagggc tacgaggtcg ccatcgcccg ttccggcgag gagggcctcg acatcgccac
     1681 ccaccaggcg cccgacctgg tcgtgctcga cgtccggctg cccggcatcg acgggctcga
     1741 ggtcctgcgc cgtctccggg cgagcggggc caagatgccg gtgctggtgc tcaccgcgcg
     1801 cgacgacgag gtggacaagg tgatcggcct cgagctcggc gcggacgact acctgaccaa
     1861 gccgttcggc ctgcgcgagc tgatgagccg gatcaaggcg ctcctgcgcc gctcgtacgg
     1921 cgacctgtcc gatgcggccg gcggccgcgt gatccgccac ggcgacctgc tcatcgacct
     1981 cgagcgacgg cgcgtccagc gcgggacccg gcggatcagc ctgaccccga ccgagttcga
     2041 gatcctccgc cacctggcgt cacggccggg ccgcgtctac acccgcagcg agctgctcga
     2101 gctgctgcgc gactacgagg cgctcgacca ggacgagaag acgatcaacg tccacgtcag
     2161 ccacctgcgc gacaagatcg aggacgaccc gacgtcaccg gcgttcgtgc tcacggtccg
     2221 aggtgtcggc tacgccttcg ccgagcgctg agggcgccgg cagccagggg gtgccggggc
     2281 tgtcagcgcc tccaccggtc cgtctgccgc gccggcttcg ccggctcctc ccgaggacgt
     2341 tccagggccg gctgaccgtg gcgttcatcg gggtcatcgc gctggtcctg gtcctggtca
     2401 ccgtgctcgt cctcaaccgg ctggacgact acttctcgcg ccagcagacg accgacctcg
     2461 agcagcgctc gcagaccgtc agcagctacg tccagagcct ggcccggggc gccgcgaacg
     2521 gccagcccgt cgtcggcgtc gacaacgtgg tcaacccggc ggtcgtcgcc gcgctgtcgg
     2581 accgggacca gcagcgggtg atcgccgacc ggctcggcca ggccgacgtc acgatccagt
     2641 tcggc
//
LOCUS       DATDDI010000943         2081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_207851, whole genome shotgun sequence.
ACCESSION   DATDDI010000943 DATDDI010000000
VERSION     DATDDI010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207851"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VIU37_13820"
     CDS             complement(<1..299)
                     /locus_tag="VIU37_13820"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HEY6015087.1"
                     /translation="MTVEALRRRRPSTLADLLEAYGRELQAVAYLILRDRAEAEDVVI
                     ETLLTAFERGGDIRDERALRAWLLRVATNHALGRRRRTARLVRLDLSAQAAGPGDL"
     gene            392..2008
                     /locus_tag="VIU37_13825"
     CDS             392..2008
                     /locus_tag="VIU37_13825"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY6015088.1"
                     /translation="MAAFDLLIRGGTVVDGGGTPGRLADLGVIGDRIAAVGDLSAAAA
                     GEVELVLDATGRVVAPGFIDPHGHSDGSVLLDGALASHLHQGFTTQLSGNCGESLAPV
                     TEAGRELVELSLRPHGLVAGWASFGEYLDLVDEQPLAPNVAFLVGHGTVRGAVLGTAA
                     RAPDRRELAAMVGEVEAAMDAGALGLSSGLIYAPGMHAAPGEIHALVGATARRGGLYA
                     THMRNEADGLFDSLDESIAAVSAAGSGARLQVSHLKCASGPVRGRAADAVARLDGARR
                     NGLDVAADQYPYTAAATTLATILPPALQALGVDACVDALGDRDVRAGVRAEIARGRSG
                     WENVAADPGWDGIAIAFAASHPDWAGRSLGELAAELGRDPAEVAFDALVDDRLDVSIV
                     IHCMDPADVATIVAVPWIAVCTDAEGRRPGHPILDSGRPHPRTYGTTARVLGTHVREL
                     RTLPLETAVAKLTSVPAARLGLDDRGVIRPGAFADLVVFDPATVRDEASYVDPARYPS
                     GVDHVIVNGRPAILSGSETGERPGRLLRRR"
BASE COUNT          253 a          759 c          774 g          295 t
ORIGIN      
        1 aggtcgccgg gaccggcggc ctgagcggag aggtcgagac gaaccaggcg cgccgtcctg
       61 cgccgccgcc cgagcgcgtg gttggtggcc acccggagca gccaggcgcg gagtgcccgc
      121 tcgtcgcgga tatcaccgcc acgctcgaac gccgtcagca gcgtctcgat caccacgtcc
      181 tccgcctcgg cccggtcgcg aaggatgaga taggcgactg cctgcagctc acggccatac
      241 gcctccagca gatcggcgag cgtcgacggg cgacgccttc tcagagcctc gacggtcatc
      301 cgtccatcct tcccgggcga tcgtggccgc cgtcggagga tagatggccg agggggccgg
      361 ttcgggctag tcgatgtgtc accatcgcgt catggctgcg ttcgacctgc tcatccgggg
      421 cggcaccgtc gtcgacggcg gcggcacgcc cggccggctc gccgacctcg gcgtgatcgg
      481 cgaccggatc gccgccgtcg gcgacctgtc ggcggccgca gccggcgagg tcgagctcgt
      541 cctcgatgcc acgggccggg tcgtggcccc aggcttcatc gatccgcacg ggcactcgga
      601 cggctcggtc ctgctcgatg gggcgctggc cagccatctc caccagggct tcactacgca
      661 gttgtcgggc aattgcggcg agtcgctggc gcccgtcacg gaggcgggcc gcgagctggt
      721 cgagctgtcg ctgcggccgc acggcctcgt cgccggctgg gcgagcttcg gcgagtacct
      781 cgatctcgtc gacgagcagc cgttggctcc gaatgtcgcg ttcctggtcg gccatgggac
      841 cgtccgcgga gccgtgctcg ggacggcggc gcgagcgccg gatcgccgcg agctcgcggc
      901 gatggtcggc gaggtcgagg cggccatgga tgccggcgcg ctcggcctct cgtcggggct
      961 gatctatgcg ccggggatgc acgccgcgcc cggcgagatc cacgcgctcg tcggcgcgac
     1021 ggcccggcgt ggcggtctgt acgccacgca catgcgcaat gaggccgacg ggctgttcga
     1081 ttccctcgac gagtcgatcg ccgcggtcag cgccgccggt tcgggcgccc gactgcaggt
     1141 gtcgcatctc aagtgcgcat ccgggccggt ccggggcaga gcggccgacg ccgtggcccg
     1201 gctcgacggg gcccggcgga acggtctgga cgtcgccgcc gatcagtatc cgtacaccgc
     1261 ggcggcgacg acgctggcca cgatcctgcc accggcgcta caggcgctcg gggtggacgc
     1321 ctgcgtggac gcgctcggcg atcgagacgt gcgcgccggc gtgcgggccg agatcgcccg
     1381 tggccgatcg ggctgggaga acgtggccgc cgatcccggc tgggacggaa tcgcgatcgc
     1441 cttcgcggcc agccacccgg actgggccgg tcgctcgctc ggcgagctgg ccgccgagct
     1501 cggccgggac ccggccgagg tcgccttcga cgcgctcgtg gacgaccggc tcgacgtctc
     1561 gatcgtcatc cattgcatgg acccggccga cgtggcgacc atcgtggcgg ttccgtggat
     1621 cgccgtctgc accgacgcgg agggccgtcg cccggggcat ccgatcctcg attccggccg
     1681 gccgcatccg cggacctacg ggaccacggc cagggtcctg gggacccacg tccgtgagct
     1741 gcggacgctc ccgctcgaga cggcggtggc gaagctgacc tcggtgcccg ccgcccggct
     1801 cggcctcgac gaccgcggcg tcatccgccc gggcgccttc gccgacctcg tcgtgttcga
     1861 tccggcgacc gtccgcgacg aggcgagcta cgtggatccg gcccgctacc cgagcggcgt
     1921 cgaccacgtg atcgtcaatg gccggccggc gatcctgtcg ggatcggaaa cgggcgaacg
     1981 tcccggccgg ctgctccgac gccggtgacc ggaccggcgc gcgtccgagc cgcaggttcc
     2041 gcgcccgcgg gcgttgcggc tcccgaggtc gcgtcgatcg c
//
LOCUS       DATDDI010000944         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_582205, whole genome shotgun sequence.
ACCESSION   DATDDI010000944 DATDDI010000000
VERSION     DATDDI010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582205"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..1098)
                     /locus_tag="VIU37_13830"
     CDS             complement(133..1098)
                     /locus_tag="VIU37_13830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015089.1"
                     /translation="MTQSRRGSLVAATWLIGLGLVFLIQQAADWSWSEAWPMFVILGG
                     AGGLVSTAVRGSFGARGLWDFTWPVAWLVVGVLLLLSTTGNLGSGPGELISDWWPLAL
                     VLLGVWFLIGAIVPGRGSTEALVLPLAGVTGASVRIQYGAGELTTHPASPGNLVDGQF
                     VGGVTHRLDGPGRVELRQDVDHGVPWLDRRFAWDVGLTAEVPLDLRVDGGATRMVLDL
                     RELRIRSLELHTGASGTRVLLPRAAGATAVRAETGAAELVFEVPAGVAARIRSRMVLG
                     STQIDQGRFPPTAGGYESLDYATAQNRIDIDVQGGVGSLRVVSAN"
     gene            complement(1095..>1587)
                     /locus_tag="VIU37_13835"
     CDS             complement(1095..>1587)
                     /locus_tag="VIU37_13835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015090.1"
                     /translation="VIFTGGIALVVYIVMAIVVPEDDGEEWIPPVPPVAPASYAPPDS
                     QPVAAPAAAPATATAPAPGELPPAPAAVPPPTYWMPGSGTSRADARAARRAARREARH
                     DGTAPAIIGVFLVLIGGFFLARQWLPELDWDWFWPAMLIVLGVLLLVLALGRRSDDHG
                     DRP"
BASE COUNT          242 a          593 c          580 g          172 t
ORIGIN      
        1 cagacaagcc ggcggccgga gggtcgcccg atgcgcgcgt tgggcgctgc gcgcgttcgc
       61 tcacgcactc cagagtgcgc tcgctctagt gctcgcgccc accttcgcct ctgccgccgg
      121 ggcggccgat tctcagttcg ccgaaaccac ccgcagcgag ccgacgccgc cctggacgtc
      181 gatgtcgatc cggttctggg cggtcgcgta gtcgagcgac tcgtagccgc cggcggtcgg
      241 cgggaagcgg ccctggtcga tctgcgtgct gccgagcacc atccggctgc ggatccgcgc
      301 ggccacgccg gccgggactt cgaagacgag ctcggcggcg ccggtctcgg cccgcacggc
      361 cgtggcgccc gccgcccgcg gcagcaggac ccgcgtgcca ctggcacccg tgtgcagctc
      421 gagactgcgg atcctgagct cgcgcaggtc gagcaccatg cgcgtcgccc caccgtcgac
      481 ccgcaggtcg agcggtacct ccgcggtcag cccgacatcc caggcgaacc gccggtccaa
      541 ccacggcacg ccgtgatcga cgtcctggcg cagctccacc cgcccggggc cgtcgagacg
      601 atgcgtgacg ccgccgacga actggccgtc gacgaggttg cccgggctcg ccgggtgggt
      661 cgtcagctcg ccggcgccgt actggatccg cacgctggcc ccggtcacgc ccgccagggg
      721 aaggaccagc gcttccgtcg acccacgacc cggcacgatc gcaccgatca ggaaccagac
      781 gcccaggagc accagggcga gcggccacca gtccgagatg agctcgcccg gccccgaccc
      841 gaggttcccg gtcgtgctca gcagcagcag cacgcccacg accagccacg cgaccggcca
      901 ggtgaagtcc cacagcccgc gggccccgaa gctcccacgg accgcggtcg acacgagccc
      961 tccggcgccg ccgaggatga cgaacatcgg ccaggcctcg gaccaggacc agtcggcggc
     1021 ctgctggatc aggaagacga ggccgagccc gatcagccag gtggcggcga cgagcgagcc
     1081 gcgacgggac tgggtcatgg ccggtcaccg tggtcgtccg aacgccgacc gagggcgagg
     1141 accaggagga ggacgccaag gacgatcagc atcgccggcc agaaccagtc ccagtccagc
     1201 tcgggcaacc actgccgggc gaggaagaag ccgccgatga gcaccaggaa caccccgatg
     1261 atcgctggcg cggtgccatc gtggcgcgct tcgcggcgtg ccgcgcggcg ggcggcccgg
     1321 gcgtcggccc gcgacgtgcc ggagccgggc atccaatacg tcggcggagg cacggccgcc
     1381 ggcgcgggtg ggagctctcc gggtgccggt gccgtcgcgg tcgccggcgc ggcggccggc
     1441 gcggcgaccg gctgggaatc gggcggggcg taggaggccg gcgcgacggg cggcaccggc
     1501 gggatccact cctcgccgtc gtcctcgggg accacgatgg ccatgacgat gtagacgacg
     1561 agggcgatgc cgccagtgaa gatcacg
//
LOCUS       DATDDI010000945         2187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_416102, whole genome shotgun sequence.
ACCESSION   DATDDI010000945 DATDDI010000000
VERSION     DATDDI010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416102"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VIU37_13840"
     CDS             complement(<1..379)
                     /locus_tag="VIU37_13840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015091.1"
                     /translation="MADQLSLRLEADTLPDLPELRPMLPRPLPAPFDSDQHLFEPWWG
                     GERALVMIGPTDLEGSGEVRVVDAAGRDLSGVLPELSGLAVRVAARSAILDGELVVVD
                     GTGRADARELARRLSGSPGAPAAF"
     gene            435..>2187
                     /locus_tag="VIU37_13845"
     CDS             435..>2187
                     /locus_tag="VIU37_13845"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY6015092.1"
                     /translation="MSRAPRPDDLYRLRVATEPRLSPDGSLAIVTLKTVAPGFDGYRQ
                     AIWLVPTDASCEPRRLTLGVGQDRAARFSPDGRTLAFLSDRGPLLERDAREARDRRDG
                     RLRTPAARGVPREPEDASQVYLLPLDGGEARRLTDLPRGVEALEWSPDGSRLVVVSTS
                     REATHAAAARRRGPDTDPAVGQPPGSDYRFIDRLDYMLNGKGFTYDRVPHLWLVDAAT
                     GVASRLTDGPVADREPAWSPDGRRIAFSSNRRRDPDLVGRQDIHVVDVETRAVTALTR
                     GPRSLFGWPAFLPDGTAVVALGHRFEGRAGSRNDIWRFAADGSDASPTGGRNLSAKHD
                     LMPGAIMNSDVTVESGPRLVPSPDGRWIGFSAPVDGAYELWRIAVDDGRLERLTEGRH
                     YVSDWDAQTGRIAYLRSSPTEPPDLWVLDVDRPGGGAPSGGAAKARASGSRASVATPR
                     RLSSFNADLVAEVELREPRERTRTVDGRRIQGWFLAAADGPSADGHARSGGPRPLVVE
                     IHGGPHTLYGWSPSLEFQLLAASGIGVFYCNPRGSEGYGQAFNDANHRDWGHGPMRDV
                     LAGVDGLVADGLADPDRL"
BASE COUNT          279 a          830 c          798 g          280 t
ORIGIN      
        1 ggaaggccgc gggagcgccg ggcgagccgg acaaccggcg tgccagttcc cgcgcatcgg
       61 cgcgtccggt tccgtcgacg acgaccagct cgccgtcgag gatggccgag cgtgccgcca
      121 ccctgaccgc gagcccggac agctcgggca ggacgccgga caggtcgcgc cccgccgcgt
      181 cgacgacgcg gacctcgccc gagccttcga ggtcggtcgg gccgatcatg accagcgccc
      241 gttcgccgcc ccaccacggc tcgaacaggt gctggtccga gtcgaacggc gccgggagcg
      301 ggcgcgggag catcggccgc agctccggga gatcgggcag cgtgtcggcc tcgaggcgca
      361 gcgagagctg atcggccatc gtccggcgat ggtagcccgc tacactcagc gcgtcccacg
      421 aatcggagga accgatgtcg cgcgccccac gccccgacga cctctaccgg ctgcgcgtcg
      481 cgaccgagcc ccggctgtcg ccggatgggt cgctcgcgat cgtgaccctc aagacggtcg
      541 cccccgggtt cgacggctat cgccaggcga tctggctcgt gccgaccgac gcctcgtgcg
      601 agccacgccg gctgacgctc ggcgtcggtc aggaccgtgc cgcgcgcttc tcacccgacg
      661 gtcgcaccct tgcgttcctg tcggatcgcg ggccgctgct cgagcgcgat gcccgcgagg
      721 cacgcgaccg ccgtgacggc cggctccgga cgccggcggc tcgcggcgtc ccgagggaac
      781 ccgaagacgc ctcgcaggtc tacctgctac cgctcgacgg cggggaggcg cgccggctga
      841 ccgacctgcc gcgcggtgtc gaggccctcg agtggtcgcc cgacggatcg cggctcgtcg
      901 tcgtgagcac gtcgcgggag gcaacccacg cggcggccgc ccgacgccgc ggccccgaca
      961 ccgatccggc cgtgggtcag ccgcccggat ccgattaccg gttcatcgat cggctggact
     1021 acatgctcaa cggcaagggc ttcacctacg accgggtgcc gcacctctgg ctggtcgatg
     1081 cggcgaccgg cgtggcgagc cggctgacgg acgggcccgt ggccgatcgc gaaccggcct
     1141 ggtcgcccga tggccgccgg atcgccttca gctcgaaccg gcgccgcgat ccggacctgg
     1201 tcggccgcca ggacatccac gtggtcgacg tggagacccg ggcggtgacg gcgctcaccc
     1261 gcggcccgag gtcgctcttc ggctggcccg cgttcctgcc ggacgggacc gcggtggtcg
     1321 cgctcggtca tcggttcgag ggtcgcgccg ggagccgcaa cgacatctgg cggttcgccg
     1381 cggacggctc ggatgcgtcg ccgaccggtg gccgcaacct gtcagccaag cacgacctga
     1441 tgcccggcgc catcatgaac agcgacgtga cggtcgagag cggcccacgg ctcgtgccgt
     1501 ctcccgacgg ccggtggatc gggttcagcg ccccggtcga cggcgcctac gagctgtggc
     1561 ggatcgccgt cgacgacggg cggctcgagc ggctgaccga gggccgccac tacgtgtccg
     1621 actgggatgc ccagaccggc cggatcgcct acctgcggtc gtcgccgacc gagccgcccg
     1681 acctgtgggt cctcgacgtg gaccggccgg gcggcggagc gcccagcggc ggagcggcga
     1741 aggcgcgagc ctccggctcc cgggcctcgg tcgccacgcc gcgccggctg tcgtcgttca
     1801 atgccgacct ggtcgccgag gtcgagctcc gcgaaccgcg cgagcggacg cggaccgtgg
     1861 acggccggcg gatccagggc tggttcctcg cggccgcgga cggtccgtcg gcggacggcc
     1921 atgcgcggtc cggcggcccg cgcccgctcg tcgtcgagat ccacggcgga ccccacaccc
     1981 tctacggctg gtcgccgtcg ctcgagttcc agctgctcgc cgcctccggc atcggcgtct
     2041 tctactgcaa cccgcgtgga tcggagggct acggccaggc gttcaacgac gccaaccacc
     2101 gcgactgggg tcacggcccg atgcgcgacg tcctggccgg cgtcgacggg ctcgtggccg
     2161 acggcctcgc cgacccggat cgcctcg
//
LOCUS       DATDDI010000946         3972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_520050, whole genome shotgun sequence.
ACCESSION   DATDDI010000946 DATDDI010000000
VERSION     DATDDI010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520050"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..3444)
                     /gene="carB"
                     /locus_tag="VIU37_13850"
     CDS             complement(1..3444)
                     /gene="carB"
                     /locus_tag="VIU37_13850"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF003671.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEY6015093.1"
                     /translation="MSAPGPKPASVLILGSGPVVIGQAAEFDYAGTQACRALRAEGIR
                     TILVNSNPATIMTDPSVADAIYLEPLTVEAVEAVIVAERPEGLLAGLGGQTALNLTAA
                     MADAGVFARHPIRLLGTPLEAIRMAEDREAFRDLLDRLGQPYAPSRIVEGATPEERAS
                     SADEALAAIGLPAIIRPAFTLGGTGGGIVESEAAFRERIRSGLRASPIGQVMVERYLT
                     GWQEIEYEVMRDADDTCIAVCGMENVDPLGVHTGDSIVVAPIQTLTDAVHQRLRSAAL
                     AIIRALGVEGGCNVQFALSPDSTEYAVIEVNPRVSRSSALASKATGYPIARVAAQIAV
                     GRRLAEIPNVVTGTTVAAFEPALDYVVVKLPRFPFDKFPTADRTLGSQMKATGEVMAI
                     DRTFGSALNKALRGLEQAGVGPLAEDPSWPPTFDYLAAVYGGDPDADEPIRWVDETGA
                     ACESTRFAQRSGAPIVLKRFLGPSDSRLWRILGLMRRGVPEALIGEVTGIAPWFLGEM
                     GRNVALEGEARAAGQRLANPADPEAAELLATLKRAGFGDRELAGLAGTTQEQLRDARM
                     VLGLRPGYAMVDTCAAEFAAETPYFYSTYAAAGSPPEAPPVEREAALVIGSGPVRIGQ
                     GIEFDYCAVQAADTLRRAGWRAVMINSNPETVSTDFDASSRLYFEPLDPESVRNVIEA
                     ESPDGVGLLPAVVAYGGQTPLNLASALAAAGVPLLGSDLEAIDQAEERTRFSALLDRL
                     GIPQPDGGMAHSVEEALTLADRIGYPVIVRPSFVIGGLAIDFCYSASDLARQLAAATV
                     VDPDRPVRIDRYLEGVEVDVDAISDGSLVLIPGLLEHVERAGVHSGDSVGMFPPQTVS
                     AGDQELIVATMERIVLALGARGLVNAQFIVRDDGVYLIEVNPRASRTVPFMSKVTGVP
                     MVELAVRISLGATLPELGWTGGLLAPPALVAVKAPAFSTAKLRGVDPSLGPGMQSTGE
                     VIGLATDPRVALAKALLGAALIPPRPGLGGALALLSIADRDKALLPRLASGLAAAGYR
                     LAATPGTRIALADAGFEARPVAKLGEAADESIEEVPILELIGSGEVRLVVNTPTPRSG
                     VVRDAAEIRHAATAEGILCLTAIETAVAAAEALDPAIAGRLAEVRSLESWVPSPAAVP
                     A"
     gene            complement(3441..>3972)
                     /locus_tag="VIU37_13855"
     CDS             complement(3441..>3972)
                     /locus_tag="VIU37_13855"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEY6015094.1"
                     /translation="VRAMRHRGTSVRVFPHTATASDVLASDIDGVILSPGPGDPARLA
                     AQVALARAVIADGRPLLGICLGHQIVARAAGADTRRLRFGHHGANHPVHDVELGRVQV
                     TAQNHEVQVVAESVRAASGFHVSQVNLNDGSVEGLRHRELPIETVQYHPEGAPGPLDA
                     LEVFDRFVAAARMRAG"
BASE COUNT          551 a         1445 c         1476 g          500 t
ORIGIN      
        1 ctaggcggga acggcggccg ggctcggcac ccacgactcg agcgaccgga cctcggcgag
       61 cctcccggcg atggccgggt cgagcgcctc ggcggcggcg acggcggtct cgatcgcggt
      121 caggcagagg atcccttccg ccgtcgcagc gtggcggatc tcggcggcat cacgcacgac
      181 gccggagcgc ggcgtcggcg tgttgacgac caggcgcacc tcgcccgatc cgatgagctc
      241 caggatcggc acctcctcga tcgactcgtc ggcggcctcc ccgagcttgg ccaccggcct
      301 ggcctcgaag ccggcatcgg ccagcgcgat gcgggtcccg ggcgttgccg cgagccgata
      361 tccggcggcg gcgagcccgg acgcaaggcg gggcaggagc gccttgtcgc ggtcggcgat
      421 cgacaggagg gcgagcgcgc cgcccaggcc cggccgcggc gggatcaggg cggcgccgag
      481 gagggccttc gcgagcgcga cccgtggatc ggtggccagc ccgatgacct cgccggtgga
      541 ctgcatgccc ggcccgagcg acgggtccac gccgcggagc ttggccgtcg agaaggccgg
      601 ggccttgacc gcgacgagcg ccggtggcgc cagcagtccg ccggtccagc cgagctcggg
      661 caacgtcgcg ccgagcgaga tgcggaccgc aagctccacc atcgggacgc cggtgacctt
      721 cgacatgaac ggcaccgtcc gcgacgcccg cgggttgacc tcgatgaggt agacgccgtc
      781 gtcgcggacg atgaactgcg cgttgaccag cccgcgggcg ccgagcgcga ggacgatccg
      841 ttccatcgtg gcgacgatca gctcctggtc cccggccgac accgtctgcg gcgggaacat
      901 cccgaccgag tcaccgctgt ggacgccggc acgctcgacg tgctcgagca gcccggggat
      961 gaggacgagg ctcccgtcgg agatggcgtc gacgtcgacc tcgaccccct cgaggtaccg
     1021 gtcgatccgg accggccggt cggggtcgac cacggtggcc gccgcgagct ggcgggcgag
     1081 gtccgacgcc gagtagcaga agtcgatcgc gagcccgccg atgacgaacg acggccggac
     1141 gatgaccgga tagccgatcc ggtcggccag cgtgagcgcc tcctcgacgc tgtgggccat
     1201 cccgccatcc ggctgcggga tcccgagccg gtcgagcagc gccgagaacc gggtccgctc
     1261 ctcggcctgg tcgatcgcct cgaggtccga gcccagaagg ggcacgccgg cggcggccag
     1321 cgcgctcgcc aggttgagcg gcgtctggcc cccgtaggcc acgaccgccg ggagcagccc
     1381 gacgccgtcc ggggactccg cctcgatcac gttgcgcacg ctctccgggt cgagcggctc
     1441 gaagtagagg cgcgagctgg catcgaagtc cgtcgagacg gtctcggggt tggagttgat
     1501 catcaccgcc cgccagccgg cccggcggag cgtgtcggcc gcctggaccg cgcagtagtc
     1561 gaactcgatc ccctgcccga tccggaccgg cccggagccg atcacgagcg ccgcctcgcg
     1621 ctcgaccggc ggtgcctccg gcggcgaccc ggccgcggca taggtcgaat agaagtacgg
     1681 cgtctcggcg gcgaactcag cggcacaggt gtcgaccatg gcgtagccgg gccgcaggcc
     1741 gaggaccatc cgggcgtccc ggagctgctc ctgggtcgtg ccggccagcc cggccagctc
     1801 acgatcgccg aacccggcgc gcttgagcgt ggccaggagc tcggcggcct ccgggtcggc
     1861 ggggttcgcc aggcgctggc ctgccgcccg ggcctcgccc tcgagcgcca cgttgcggcc
     1921 catctccccg aggaaccagg gcgcgatccc cgtcacctcg ccgatcaacg cctcggggac
     1981 cccccggcgc atcagcccga ggatccgcca gagccggctg tcggacggcc cgaggaaccg
     2041 cttgaggacg atcggagcgc cgctccgctg ggcgaagcgg gtcgattcgc acgccgcgcc
     2101 ggtctcatcc acccagcgga tcggttcgtc ggcatcggga tcgccgccgt agacggcggc
     2161 caggtagtcg aacgtcggcg gccaggatgg atcctcggcg agcgggccga cgcccgcctg
     2221 ctcgagcccg cgcaacgcct tgttgagcgc cgagccgaac gtccggtcga tcgccatcac
     2281 ctcgccggtc gccttcatct ggctgccgag cgtccggtcc gcggtcggga acttgtcgaa
     2341 tgggaagcgc ggcagcttga ccacgacgta gtcgagggcg ggctcgaagg cggcgacagt
     2401 cgtaccggtg acgacgttcg ggatctcggc cagccggcgg ccgactgcga tctgcgccgc
     2461 gacccgggcg atcggatagc cggtcgcctt ggaggcgagc gccgacgagc gcgacacccg
     2521 cgggttgacc tcgatcacgg cgtactcggt cgagtccggc gagagcgcga actggacgtt
     2581 gcagccgccc tccacgccga gcgcccggat gatcgccagg gccgcgctgc gcagtcgctg
     2641 gtggaccgcg tcggtcagcg tctggatcgg cgcgaccaca atcgagtccc cggtgtgcac
     2701 gccgagcgga tcgacgttct ccatgccgca gaccgcgatg cacgtgtcgt ccgcgtcgcg
     2761 catgacctcg tactcgatct cctgccagcc ggtcaggtag cgctcgacca tcacctggcc
     2821 gatggggctg gcgcggagcc cggaccggat ccgctcgcgg aacgcggctt cgctctcgac
     2881 gatgccgcca cccgtgccgc cgagcgtgaa ggcaggccgg atgatggccg gcaggccgat
     2941 cgccgcgagc gcctcgtcgg cggaggacgc gcgctcctcc ggcgtggcgc cctcgacgat
     3001 ccggctcggc gcgtacggct gcccgagccg gtcgagcagg tcgcggaacg cctcgcgatc
     3061 ctcggccatc cggatcgcct cgagcggcgt gccgagcagc cggatcgggt ggcgggcgaa
     3121 gaccccggca tcggccatcg cggcggtcag gttgagcgcg gtctggccac ccaggccggc
     3181 gagcaggccc tcgggccgct ccgcgacgat cacggcctcg accgcctcga cggtgagcgg
     3241 ttcgaggtag atcgcgtcgg ccaccgatgg gtcggtcatg atcgtggccg ggttcgagtt
     3301 gacgaggatc gtccggatcc cctcggcccg cagggcgcgg caggcctgcg tccccgcgta
     3361 gtcgaactcg gcggcctggc cgatgacgac cgggcccgag cccaggatca ggaccgacgc
     3421 gggcttcggg cccggcgcgc tcatccggcg cgcatccggg ccgcggccac gaaccggtcg
     3481 aacacctcga gcgcgtcaag gggcccgggc gcgccctccg ggtggtactg gaccgtctcg
     3541 atcggcagct cgcgatggcg gaggccctcg acggagccgt cgttgaggtt gacctggctg
     3601 acgtggaacc cggacgcggc ccgcaccgat tcggcgacca cctggacctc gtggttctgc
     3661 gcggtcacct ggacgcgccc gagctcgacg tcgtggaccg ggtggttcgc cccgtgatgc
     3721 ccgaaccgga gccggcgcgt gtcggcgccg gcggcgcgcg ccacgatctg gtgacccagg
     3781 cagatcccga gcaatgggcg gccgtcggcg atgacggcgc gggcgagcgc gacctgcgcc
     3841 gccagccggg cgggatcgcc cgggcccggc gacaggatga cgccgtcgat gtccgaggcg
     3901 agcacgtccg aagccgtggc agtgtgcggg aacaccctca cgctcgtgcc gcggtgccgc
     3961 atcgcccgca cg
//
LOCUS       DATDDI010000947         2571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_416167, whole genome shotgun sequence.
ACCESSION   DATDDI010000947 DATDDI010000000
VERSION     DATDDI010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416167"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..977)
                     /locus_tag="VIU37_13860"
     CDS             complement(<1..977)
                     /locus_tag="VIU37_13860"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015095.1"
                     /translation="MTSDRPPVAVLLGGPSAEHDVSIVSGTAIAAALVAEGFPVEQVL
                     IDLDGGWWWLPAGHRREDRAPAAYDDPAGLGAEGPLTVGAALDRLAAAAPRPVVAIAL
                     HGPFGEDGTIQALLESAGLAYTGSGVAASAVGMDKSLFKRLCRGLGLPVADWRDIRHD
                     AWLADPGAVRSELEAFTAGNGDPRLMVKPARLGSSVGMTLVHGPAELEGALETAFRHD
                     TLALAETYLAGARDLEVSVIGNDPARLELYGPGEIVSGHEFYDYAAKYTPGLSETSTR
                     AELADRQRATILKIARDAYRAVGAEGFARLDFLLVGETIYLSEINTIPG"
     gene            complement(974..1930)
                     /gene="murB"
                     /locus_tag="VIU37_13865"
     CDS             complement(974..1930)
                     /gene="murB"
                     /locus_tag="VIU37_13865"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: protein motif:HMM:NF010480.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEY6015096.1"
                     /translation="MIADFDAIAIGTEIQRRIGVKTSRDEPLGRFTSMRVGGPADLFA
                     VAHNAFELRALVRFARSRGLPHLIVGRGSDLVIADAGVRGLVIQVRAEGSRIEGSRYT
                     AEAGVQMARAATETQGAGLTGLEFGLAIPGTVGGAVWANAGAHGSDVAGILESARLLD
                     ADGAERVVSGAELGFDYRDSRLKHAAPGGPGELVIEATFALVPADPAVIKGRLDEIRR
                     WRQAHQPIGLPSAGSVFRNPPGDSAGRLIEAAGLKGLRMGGAVVSVKHANFIVNDQKG
                     TASDVRRLAEHVRAEVARVHGVDLQLEIEFVGDWTGWKAGAA"
     gene            complement(1927..>2571)
                     /locus_tag="VIU37_13870"
     CDS             complement(1927..>2571)
                     /locus_tag="VIU37_13870"
                     /inference="COORDINATES: protein motif:HMM:NF016027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY6015097.1"
                     /translation="RDVDREAARRRLDIAPSERVLLVFGGSQTVRRFNAAVAAALPTL
                     VERVTVIHVAGEDGYAGALADRETLPEAQRQRYRPYPFLRDDMLTALAAADLVVGRAG
                     SSTLAEATALGLPMVVVPYPHAAGHQRANAASLVEAGAARLVDDAAFDAAALLEAAAL
                     LDDPAAHVQMSAAARALGRPGAAAAVAQLVMAVATRGPLPEPAAIERLARGGGT"
BASE COUNT          350 a          969 c          938 g          314 t
ORIGIN      
        1 aatcccggga tcgtgttgat ctccgacagg tagatcgtct cgcccacgag caggaagtcg
       61 agcctggcga acccctcggc gccgaccgcc cggtaggcat cgcgcgcgat cttgaggatc
      121 gtcgcccgct gccgatcggc cagctcggcc cgcgtcgaag tctcggacag accgggcgtg
      181 tacttcgccg cgtagtcgta gaactcgtgg ccggacacga tctcgcccgg gccatacagc
      241 tcgagacggg ccgggtcgtt gccgatcacc gagacctcca ggtcgcgggc acccgccagg
      301 taggtctcgg ccagcgcgag cgtgtcgtgc cggaaggccg tctccagggc gccctcgagc
      361 tcggccggtc cgtgcaccag ggtcatcccg accgagctgc ccagacgggc gggcttgacc
      421 atgagccgcg gatcgccgtt gcctgcggtg aatgcctcga gctcggaccg gaccgcgccc
      481 gggtccgcca gccaggcgtc gtggcgaatg tcgcgccagt ccgcgaccgg caggccgagc
      541 ccgcggcaca gtcgcttgaa caaggacttg tccatgccga cggccgacgc ggcgacgccg
      601 gagccggtgt aggccaggcc ggccgactcg agcagcgcct ggatcgtccc gtcctcgccg
      661 aacgggccat ggagggcgat cgcgaccacc ggcctgggcg ccgccgccgc aagccggtcg
      721 agcgcggcac ccaccgtcag cgggccttcc gcgcccagcc ctgccggatc gtcgtaggcg
      781 gcgggagcac ggtcctcgcg ccgatgcccg gcgggcagcc accaccagcc gccgtcgagg
      841 tcgatcagga cctgctcgac cgggaacccc tcggccacga gcgccgcggc gatggcggtc
      901 cccgacacga tcgacacgtc gtgctcggcg gacgggccgc cgagcagcac cgcgaccgga
      961 gggcggtccg aggtcacgcg gcgccggcct tccagccggt ccagtcgccg acgaactcga
     1021 tctcgagctg gaggtcgaca ccgtggacgc gcgcgacctc ggcgcgaacg tgctcggcca
     1081 gccgccgcac gtcggacgcc gtccccttct ggtcgttgac gatgaagttg gcgtgcttca
     1141 cggagacgac ggcaccaccc atccgcaggc ccttgagccc ggcggcctcg atcagccgcc
     1201 cggccgagtc gcccggcggg ttccggaaca cgctgcccgc cgagggcagg ccgatcggct
     1261 ggtgggcctg ccgccagcgc cggatctcgt cgagccggcc cttgatgacg gccggatccg
     1321 cgggcacgag ggcgaacgtg gcctcgatga cgagctcgcc cggcccaccc ggggcggcat
     1381 gcttgagccg gctgtcgcga tagtcgaagc cgagctcggc cccgctgacg acccgttccg
     1441 cgccgtcggc gtccagcagg cgcgctgatt cgaggatgcc ggccacgtcg gaaccgtggg
     1501 ccccggcatt ggcccacacg gcgccgccga cggttcccgg gatggcaagc ccgaactcga
     1561 gcccggtcag gccggcgccc tgcgtttccg tggccgcgcg cgccatctgg acgcccgctt
     1621 cggcggtgta ccggctcccc tcgatcctgg agccctcggc tcgcacctgg atcaccaggc
     1681 cgcgaacgcc ggcgtcggcg atcacgaggt cgctcccacg gccgacgatc aggtgcggca
     1741 ggccgcggct gcgcgcgaac cggaccaggg cacgcagctc gaacgcgttg tgggcgacgg
     1801 cgaagagatc ggccgggccg ccgacacgca tcgaggtgaa ccggccgagc ggctcgtcgc
     1861 gcgacgtctt gacgccgatc cgccgctgga tctcggtccc gatcgcgatc gcatcgaagt
     1921 ccgcgatcat gttccgccgc cccgggcgag ccgctcgatc gccgcgggtt ccggcagcgg
     1981 cccgcgggtg gcgaccgcca tgaccagctg ggcgacggcg gccgccgcac ctggacggcc
     2041 gagggcccga gccgcggccg acatctggac gtgtgccgcc ggatcgtcga gcagggcggc
     2101 cgcctcgagc agcgccgccg cgtcgaacgc cgcgtcgtcc acgagccgcg cggccccggc
     2161 ctcgaccagg ctcgccgcgt tcgcccgctg gtggccggcg gcgtgcgggt acggcaccac
     2221 gaccatcggc agcccgagcg cggtggcctc ggcgagcgtg gaggagcccg cccggccgac
     2281 cacgaggtcg gcggccgcca acgccgtgag catgtcgtcg cgcaggaacg ggtacggccg
     2341 gtagcgctgg cgctgcgcct cgggcagggt ctcgcgatcc gcgagcgcgc cggcgtagcc
     2401 gtcctcgccg gcgacgtgga tgacggtgac ccgttcgacg agcgtcggca gcgcggccgc
     2461 gaccgcggcg ttgaaccgcc ggacggtctg cgatccgccg aacaccagta ggacgcgttc
     2521 cgagggcgcg atgtccaggc gccgccgggc ggcctcgcga tcgacgtcgc g
//
LOCUS       DATDDI010000948         1680 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_499449, whole genome shotgun sequence.
ACCESSION   DATDDI010000948 DATDDI010000000
VERSION     DATDDI010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499449"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1506)
                     /locus_tag="VIU37_13875"
     CDS             complement(1..1506)
                     /locus_tag="VIU37_13875"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEY6015098.1"
                     /translation="MPSARRLTGARPEALFQPPPERQPLAARMRPRNLDEFVGQDHLV
                     GDRGPLRRGIARGHLSSLLLWGPPGSGKTSLARLLAAEVGAHFTSLSAVMSGVVEVRN
                     TIAEAQERLALHGTRSVLFLDEIHRFNKAQQDALLPHVEDGTVTLVGATTENPYFEVN
                     GALLSRMRVWRLETLTDEDVATVVRRAIEDEERGLGGALGPTGGVALSPEAFDLLVSL
                     AGGDARAALNVLEGATAIAETEDVRDAGGHVSPRLEDVESAAQQRVLAYDRAGDGHYD
                     TVSAFIKSLRGNDPDAALYWLAAMIAAGEDPKFIARRLIISASEDVGNADPRALQVAV
                     AAGQALDWIGLPEAQYALAQATVFVAVSPKSNRVGRAYGAAMDDVIRHGSQPVPKHLR
                     SATGRQRRDTGDGAGYLYPHDFEEADVDQQYLPDLLHAQGRRYYVPSDQGVERRIGEF
                     MESRRARRSAGRPKRVPQPGSDPMAGMGGGMQAHTEARKKLAETQKRDAGA"
BASE COUNT          218 a          605 c          613 g          244 t
ORIGIN      
        1 ctaggcgccg gcgtcccgct tctgcgtctc ggccagcttc ttcctcgcct ccgtgtgggc
       61 ctgcatgccg ccgcccatcc ccgccatggg atcgctgccg ggctgcggca cgcgcttcgg
      121 tcgaccggcc gagcgccgcg cccggcgact ctccatgaac tcgccgatcc gccgctcgac
      181 gccctggtcc gacggaacgt agtagcgccg gccctgggcg tgcagcaggt ccggcaggta
      241 ctgctggtcg acgtccgcct cctcgaagtc gtgcggatag aggtagcccg cgccatcccc
      301 ggtgtcgcgg cgctgccggc cggtggccga tcggaggtgc ttcgggacgg gctgggagcc
      361 gtggcggatg acgtcgtcca tcgcggcgcc gtacgcgcgt cccacgcgat tcgacttcgg
      421 tgacacggcg acgaagaccg tcgcctgcgc caatgcgtac tgcgcctcgg gcagcccgat
      481 ccagtcgagc gcctggcctg ccgcgacggc gacctggagc gcccgcggat ccgcattgcc
      541 gacgtcctcg gatgcgctga tgatcagccg gcgagcgatg aacttgggat cctcgccggc
      601 cgcgatcatc gccgccagcc agtagagcgc ggcgtccgga tcgttgccac ggaggctctt
      661 gatgaacgca gagacagtgt cgtagtgccc gtcgcccgcg cgatcgtagg cgagcacccg
      721 ctgctgggcc gccgactcga cgtcctccag ccgcggactg acgtgcccgc cggcgtcccg
      781 cacgtcctcg gtctcggcga tcgcggtcgc gccttcgagg acgttcaggg cggcgcgggc
      841 gtcgccgccg gcgagcgaga ccaggaggtc gaacgcctcc ggcgacaggg ccacgccacc
      901 ggtcggaccg agcgcgccgc ccaggcctcg ttcctcgtcc tcgatggccc ggcggaccac
      961 cgtcgcgaca tcctcgtcgg tgagcgtctc gaggcgccag acccgcatgc gcgacagcag
     1021 cgcgccgttg acctcgaagt aggggttctc ggtggtcgcg ccgaccaagg tgaccgtccc
     1081 gtcctcgacg tgcggcagca gcgcgtcctg ttgggccttg ttgaagcgat ggatctcgtc
     1141 gaggaagagg acgctgcggg tgccatggag cgccagccgc tcctgcgcct cggcgatcgt
     1201 gttgcggacc tcgacgacgc cggacatgac cgccgacagg ctggtgaagt gcgcaccgac
     1261 ctcggccgcg agcaggcgcg cgaggctggt cttgccgctg cccggcgggc cccagaggag
     1321 gagtgacgag aggtggccgc gggcgatccc gcgacgcagt gggccgcgat cgccgacgag
     1381 gtggtcctgg ccgacgaact cgtcgagatt gcgcggccgc atccgcgcgg ccagtggctg
     1441 ccgctccggc ggtggctgga acagcgcttc gggtctggcg ccggtcagcc ggcgcgcgga
     1501 tggcatggct ggatggtagc gcgccgcagg tccgggtccg ccgccggagc cggccccgtc
     1561 agagcgtgat gtgcgccacc tgggtgatca cccacagcgc gaggaggacg ccgaccagcg
     1621 acccgcccac ggtcgcgatc cggcggacgt cccgggcgac gtacgcgtat tcgttgccgg
//
LOCUS       DATDDI010000949         4061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_41311, whole genome shotgun sequence.
ACCESSION   DATDDI010000949 DATDDI010000000
VERSION     DATDDI010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41311"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VIU37_13880"
     CDS             <1..236
                     /locus_tag="VIU37_13880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015099.1"
                     /translation="GRAQAALGSLSVVTEVHPPAKDGDPWQVVVRPASSEGRVRQEIL
                     VAAVDQSLRLTTLRPVVPSLDDIYRLAVTRTAA"
     gene            233..1270
                     /locus_tag="VIU37_13885"
     CDS             233..1270
                     /locus_tag="VIU37_13885"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY6015100.1"
                     /translation="MTAADSTLAADPVAAEPAAATPRDPLPRAGWRVVAAKELGDHLT
                     SVRFVVLLVVLGLAAAIPLYFAADQIRSIAPQASGFSAVFLALFTLGSQDISVLRVYE
                     FVGIVAPLLGLAFAFDAVNGERSEGTLPRLLAQPIHRDDVINGKFAAGMAVIGLVLVV
                     VVGFIAGFGMLRLGIVPHGNEVLRLLAWMVITFLYVGVWLAFGLLLSVLVRRAATAAL
                     IGFGIWLLITIFGQLITTLVNGILAPAADASPDAILANAQIQQFITRLLPSTLYRETS
                     VVLLNPSVNQISAPTSIGQVQQAQQQIQSLFSLDQSFLLVWPQVVALVFLLVVCFAAA
                     YVAFMRQEVRA"
     gene            complement(1295..3337)
                     /locus_tag="VIU37_13890"
     CDS             complement(1295..3337)
                     /locus_tag="VIU37_13890"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase UvrD2"
                     /protein_id="HEY6015101.1"
                     /translation="MPEHPSHPLLDDLDPAQREAVSITSGPLCILAGAGSGKTRVISR
                     RVAYALATGVVRPRDVLVVTFTDKAAGEMRARLAALGHPGVTAATFHAAALRQLRHFW
                     PRVHGEDAPRIAESKAPILAPLAAGLPGGYRYLAVRDLAAEIEWAKARRLRPTDYLAE
                     ATAQGRDGPLPADLMAGLFRRYQASLERAGLIDFEDMLARTIELIESDDGVAAEVRDR
                     YRWFSVDEYQDTNPLQAALLDAWLGGREDLAVVGDEDQTIYSFTGASSAYLTAFGARF
                     PNARTITLETNYRSTPEILGLANRVLAAGRQAPDERLPGDPPRPAKRLLASLPGGPAP
                     SIGGYASDETEVAAMIGAIRSLAASGTPHGSMAVLVRTNAQLPPIERALGIAGIGFHV
                     RGEGFFARPEVRRAITVARSLVRARGDEPLVGRLAAAFERDLGVHRDRPPQGEVAAER
                     HAAVVTLLELAEAMVAADPSTDPSSFLAEIERRSQVEAGGTPTGVELLTYHRAKGLEW
                     DAVFLPALEEGTLPIRQADEPAKLAEERRLLYVGITRARRHLWLSWATRRTGTTGREG
                     RRTRSRFLDGLVPRAAVRPEAGVGEGTSGSQTSRPPRVDPAERSPLSNALRSWRTERA
                     RADQVAPFIVFHDTTIEAIAASRPRSIAELRRVPGVGPTKLDRYGEEIIGVVVRTT"
     gene            3523..>4061
                     /locus_tag="VIU37_13895"
     CDS             3523..>4061
                     /locus_tag="VIU37_13895"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEY6015102.1"
                     /translation="MDQSGSTSDPGTPAPSSTGWAAPPPQVQAGPEGFVYADVPNRAI
                     AYIIDAIIVAIVAGIVGIILGSIGLSTGSFAPGTLNFSVNVVGLLVSAVVGAAISAGY
                     FIYTWTSMRGTLGMKALGMQIGNAVDGKTLTMDQATRRWLVIALPGILTQVVYVVPGI
                     GILLSLVALGWFLYLLWTT"
BASE COUNT          521 a         1464 c         1482 g          594 t
ORIGIN      
        1 ggggccgggc gcaggccgcg ctgggctccc tgtcggtcgt caccgaggtc cacccgccgg
       61 cgaaggatgg cgacccctgg caggtggtcg tccggccggc gtccagcgaa ggtcgggtgc
      121 gccaggagat cctcgtggcg gccgtcgacc agagcctccg cctgaccacg ctccggccgg
      181 tcgtgccctc gctcgacgac atctaccgcc tcgcggtcac gaggaccgcg gcatgaccgc
      241 cgccgacagc accctcgccg ccgacccggt cgcggccgag cccgccgcag cgaccccgcg
      301 cgacccgctc ccgcgtgccg gctggcgcgt cgtcgcggcg aaggagctcg gcgatcacct
      361 gaccagcgtg cgcttcgtgg tcctgctggt cgtgctcggg ctggcggcgg ccatcccgct
      421 ctacttcgcg gccgaccaga tccgctcgat cgccccgcag gcgagcggct tctccgcggt
      481 cttcctcgcg ctgttcacgc tcggctcgca ggacatcagc gtgctccgcg tctacgagtt
      541 cgtcgggatc gtggcgccgc tgctcggtct cgcgttcgcg ttcgacgcgg tcaacggcga
      601 gcggtcggag ggaacgctgc cgcggctgct cgcccagccg atccaccggg acgacgtgat
      661 caacggcaag ttcgccgcgg ggatggccgt catcgggctc gtgctcgtgg tcgtcgtcgg
      721 gttcatcgcc gggttcggca tgctgcgact cgggatcgtg ccgcacggca acgaggtcct
      781 gcggctgctc gcctggatgg tcatcacgtt cctgtacgtc ggggtctggc tcgccttcgg
      841 gttgctgctg tcggtgctgg tcaggcgcgc ggcgaccgcg gccctgatcg ggttcgggat
      901 ctggctgctg atcacgatct tcgggcagct gatcacgacc ctggtgaacg ggatcctcgc
      961 gccggccgcg gacgcgtccc ccgacgcgat cctcgccaac gcccagatcc agcagttcat
     1021 cacgcgactg ctgccgagca cgctctaccg cgagacctcg gtggtcctgc tcaacccgtc
     1081 ggtcaaccag atcagcgcgc cgacctcgat cgggcaggtc cagcaggcgc agcagcagat
     1141 ccagagcctg ttctcgctcg accagagctt cctgctggtc tggccccagg tcgtggccct
     1201 ggtcttcctg ctggtggtct gcttcgccgc ggcgtacgtc gcgttcatgc gccaggaggt
     1261 ccgcgcctag cgacacacgc cgtcgtggac cgcctcaggt cgtgcggacc acgacgccga
     1321 tgatctcctc gccgtagcga tcgagcttgg tcggcccgac cccggggact cgccggagct
     1381 cggcgatcga gcgcgggcgg ctggccgcga tcgcctcgat cgtggtgtcg tggaagacga
     1441 tgaacggcgc gacctggtcg gcccgggcac gttccgtccg ccacgaacgc agcgcgttgg
     1501 acaggggtga acgctcggcg gggtcgacgc ggggcgggcg gctcgtctgt gatcccgacg
     1561 tgccctcgcc gacgcccgcc tccggccgga cggccgcccg cgggaccagt ccatcgagga
     1621 agcgcgaccg ggtgcggcgc ccctcgcggc cggtcgtgcc ggttcgccgg gtggcccacg
     1681 acagccacag gtgccgccgc gcccgcgtga tcccgacgta caggagccgg cgctcctcgg
     1741 cgagcttggc gggctcgtcg gcctggcgga tcggaagcgt gccttcctcg agggccggca
     1801 ggaagaccgc gtcccattcg aggcccttgg cccggtgata ggtcaggagc tcgacgccgg
     1861 tgggcgtccc gccggcctcg acctgtgacc ggcgctcgat ctcggcgagg aacgacgacg
     1921 gatcggtcga cggatccgcc gcgaccatgg cctcggcgag ctcgaggagc gtgacgaccg
     1981 cggcgtgtcg ctcggcggcg acctcgccct ggggcggccg gtcgcggtgg acgccgaggt
     2041 cgcgctcgaa ggccgccgcc agccgcccga cgagcggctc gtcgccccgc gcccggacga
     2101 gcgagcgggc gaccgtgatc gcgcgtcgga cctcgggccg ggcgaagaac ccctcgccgc
     2161 ggacgtggaa cccgatcccg gcgatcccga gggcgcgctc gatcggcggc agctgggcgt
     2221 tcgtgcggac gagcacggcc atcgagccgt ggggcgtccc ggacgcggcc aggctccgga
     2281 tcgcgccgat catcgcggcg acctcggtct cgtcggacgc gtacccgccg atcgacgggg
     2341 ccggcccacc cggcaggctg gcgagcagcc gcttggccgg ccgcgggggg tcccccggga
     2401 gccgttcatc gggtgcctgc cggcccgcgg cgaggacgcg gttggccagg cccaggatct
     2461 ccggggtcga ccggtagttg gtctcgagcg tgatcgtcct cgcgttcggg aaccgggccc
     2521 cgaacgcggt gaggtacgcg ctgctcgctc ccgtgaacga gtagatcgtc tggtcctcgt
     2581 cgccgacgac ggcgagatcc tcgcggccgc cgagccaggc gtcgagcagc gcggcctgga
     2641 gcgggttggt gtcctggtac tcgtcgaccg agaaccagcg atagcggtcg cggacctcgg
     2701 cggcgacgcc gtcgtccgac tcgatgagct cgatcgtccg cgccagcatg tcctcgaagt
     2761 cgatcaggcc ggcccgctcg agcgaggcct ggtagcgccg gaagagcccg gccatcaggt
     2821 cggccggcaa cggcccgtcg cgaccctggg ccgtggcctc ggcgaggtag tcggttggac
     2881 gcagccgccg ggccttcgcc cattcgatct cggccgccag gtcgcggacc gccaggtagc
     2941 ggtagccacc ggggaggcct gcggccagcg gcgccaggat cggtgccttc gattcggcga
     3001 tgcgcggggc gtcctcgccg tggacgcgcg gccagaaatg gcggagctgg cgcagcgcgg
     3061 cggcatggaa cgtggccgcg gtgacgcccg ggtggccgag cgccgcgagg cgggcccgca
     3121 tctcgccggc ggccttgtcg gtgaacgtga cgaccagcac gtcgcgcggc cgcacgacgc
     3181 cggtggccag cgcgtaggca acgcggcgcg agatcacgcg cgtcttgccg ctcccggcgc
     3241 cggccaggat gcacaaggga cccgacgtga tcgagaccgc ctcgcgctgg gcgggatcga
     3301 ggtcgtccag gaggggatgg ctggggtgct ccggcatcgt cccatcgtat cggcccgggc
     3361 ttcgctgccg attgcgcacc gcaaccggtg ccccgaggcg acgacgtcgc gccgcgacgc
     3421 gacaaaacgg ctagtcgaac ggtgcaccgg cgacctatgc tgcggcatca gccgcggcgg
     3481 gcagacggcc cgaccgtcca ggccgtcacg cgaggaggac cgatggacca gagcggatcg
     3541 accagcgacc ctggaacccc agcgccctcg agcaccggtt gggcggcgcc gccgccgcag
     3601 gtccaggcgg gtcccgaggg cttcgtctac gcagacgtcc cgaaccgggc catcgcctac
     3661 atcatcgacg cgatcatcgt cgccatcgtc gccggcatcg tcgggatcat cctcggctcc
     3721 atcgggctgt ccacgggctc gttcgcgccc gggacgctga acttcagcgt caacgtcgtg
     3781 ggcctgctcg tgtcggcggt cgtgggcgcg gccatcagcg ccggttactt catctacacc
     3841 tggacgagca tgcgcgggac ccttggcatg aaggccctcg gcatgcagat cggcaacgcc
     3901 gtcgacggca agaccctgac catggaccag gcgacgcggc gctggctggt gatcgcgctc
     3961 ccgggcatcc tgacgcaggt cgtctacgtg gtgccgggaa tcggcatcct gctgtcgctg
     4021 gtcgccctgg gctggttcct ctacctgctg tggaccacct a
//
LOCUS       DATDDI010000950         5422 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_62367, whole genome shotgun sequence.
ACCESSION   DATDDI010000950 DATDDI010000000
VERSION     DATDDI010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 5422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5422
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62367"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VIU37_13900"
     CDS             complement(<1..508)
                     /locus_tag="VIU37_13900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015103.1"
                     /translation="MSEPAIEVLHVGSASRDLAADDPRGWRLGGGVTYAALTTARLGL
                     RTAAVVGADPLAATAAELDLLRRSGVTLHVVPLAESPVFRNIEAEGGRIQTCVAPGQR
                     LPVVGLPAAWVAARAWSLVPVAGELGDEWAAAIPPGAFLALGWQGWLRELAAGRTVAR
                     RSPERSELL"
     gene            586..975
                     /locus_tag="VIU37_13905"
     CDS             586..975
                     /locus_tag="VIU37_13905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015104.1"
                     /translation="MFFYELHEGDNEVYSDVLVVSESEWEPEEFFQLVQSIRRRIQDQ
                     FIQDTLVEAIAIELERDHGFIYVSDDQLTASVNVSTEESENFLARLEVELAEAGDDDD
                     DEDDEDEDGADYRAILADFDPSGDRLN"
     gene            complement(1005..2108)
                     /gene="ychF"
                     /locus_tag="VIU37_13910"
     CDS             complement(1005..2108)
                     /gene="ychF"
                     /locus_tag="VIU37_13910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEY6015105.1"
                     /translation="MQTAIVGLAGSGKTTVFNTLTRGHAETGGYGGVTLNVGVVKVPD
                     PRLDALAAIFKPKKIVHADVTYVDMPAPPPSTEGHVGTEELPADHLARLRDSDALLHV
                     VRAFEDPANPHPDGSVDPERDIERLDLEFLLADLAMTERRLERLQGSGRHGTPAEREA
                     AEREEVVLRRLHEGLQAGSPIRDLPLDPDEEKAIRGFRFLTQKPVLILLNVGESQIPG
                     APELIARVATGYHHQHVMVEALSARIEMELGELEPDEAAAFMEELGIAESGLDRVIAL
                     SYRLLGLVSFLTAGPDEVRAWPVPDGATAVDAAGVIHTDLAKGFIRAETVAYEDLVKL
                     GSMAEARKHGRLRSEGRTYRVQDGDVIEVLFSR"
     gene            complement(2128..3204)
                     /locus_tag="VIU37_13915"
     CDS             complement(2128..3204)
                     /locus_tag="VIU37_13915"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEY6015106.1"
                     /translation="MSEPESAGRKRHAGPGSGPGGAPTAIALSPILSARYRARDLERI
                     RAAAPGARLVMVSVEGLADGPVDDVEVMLRGWLSSEAFDRLLARAPRMSWVHSATSGV
                     ERALTPAALDRGLVVTNARGVFSRPIAEYVLMMILAISRRLPQLLELQRERTWQPLEG
                     TELRDVTVGIVGLGSIGRAVGALATSFGCRVIAVRRRTHDRFDPSDQEDDEPSFGPVA
                     LDRVGGPDTLTALLSESDFIVLAAPLTPETEEMINDETLAMVKPGAWLINVARGRLID
                     ERALLRALRDGHLGGAVLDTFRDEPLPPMSSFYDLPNVIVTPHTAWSSGRVLDRSVEL
                     FCDNLRRFAAGEPLLNVVDPSAGY"
     gene            complement(3201..4442)
                     /locus_tag="VIU37_13920"
     CDS             complement(3201..4442)
                     /locus_tag="VIU37_13920"
                     /inference="COORDINATES: protein motif:HMM:TIGR03624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEY6015107.1"
                     /translation="MNGRSSRSGRHGRGAQPAAGLSWRDDRVWQAGFLVGSALGAVAT
                     VVGRHAERAARRGLVDWHEVERIAVGRLAGAPGALDAAELRAAEPAYAEAMTRIVPAL
                     TAALGTALPGVVERTAVVDRAGWVRANIGSFASLIGKIEADLLDQVVPPGGGLAKAAM
                     ALANRWVTNRQLGFLLGFMGTRVLGQYDLALLSMEATPGRLLFVEENIRATARALGVP
                     IGPFRTWIALHETTHAFEFEAHPWLRPYLAERLERQLTLFGSDARGIGREAARGIARA
                     LRGEGTGEHWMERLMGPEQQALFREVQAVMSLLEGFSDYVMDEVGRELVPDVERISAR
                     FHERRTNRTPFERAVLRLTGMDLKYEQYKKGEQFVRAIAALRGPAALAHLWAGPETLP
                     RAGEIEAPERWVARVLDGTAA"
     gene            complement(4439..>5422)
                     /gene="murI"
                     /locus_tag="VIU37_13925"
     CDS             complement(4439..>5422)
                     /gene="murI"
                     /locus_tag="VIU37_13925"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEY6015108.1"
                     /translation="PEPGPLDRPLAGSARRAGGRVAWLPVRLGIFDSGFGGLTIYRAI
                     RERLPRYDCVYLGDNARAPYGTRTDDEVRAFSTEAIDALVERDVKAVVVACNTSTAVA
                     IADLRRRYDLPVLGVIRPGAVTAALTTRNRRVGVIATPATIRSHAYFTAIKDENPAVE
                     VYEHATPALVPLVEAGFLSGPAAETAVAESLAPLLGERDASGEFIFPKPAGASIDTLL
                     LGCTHYPLLRAVIAAQVGERVAIVDSATATASALAELLSVNGLEAPGSSRGTAADPGS
                     AGHTRPAEHAEPALHLQLTTGDPEQFHLLASRLFGSDFPDVEQVELAVAAR"
BASE COUNT          759 a         1983 c         1957 g          723 t
ORIGIN      
        1 ccagcagctc ggaccgctcg ggcgaccggc gcgcgaccgt gcgtccggcg gccagctcgc
       61 ggagccagcc ctgccacccg agggcgagga acgcgccggg gggaatggcc gctgcccact
      121 cgtcgccaag ctctcccgcg accggcacca gcgaccaggc cctcgccgcc acccacgccg
      181 cggggaggcc gacgaccggc agccgttggc ctggcgccac gcaggtctgg atgcgaccgc
      241 cctcggcctc gatgtttcgg aacaccggac tctcggccag gggcacgacg tgcagcgtca
      301 ctccgctccg gcgcagcagg tcgagctcgg cggcggtggc ggcgagcgga tcggcgccaa
      361 cgacggccgc ggttcggagg ccgaggcggg ccgtcgtcag ggccgcgtag gtcacgccgc
      421 ccccgagccg ccacccgcgc gggtcgtcgg cggcgagatc gcggctcgcc gaaccgacgt
      481 gcaggacctc gatcgcgggc tcgctcaccg gcctcctcgc cccagggttc gatgggtggt
      541 gggtcgtata ctggccggcc gaccgcgaac gcaccaggag ttgacgtgtt cttctacgag
      601 ctgcacgaag gcgacaacga ggtctactcg gacgtcctcg tggtcagcga atccgagtgg
      661 gagcccgagg agttcttcca gctcgtccag tcgatccgcc gccggatcca ggaccagttc
      721 atccaggaca ccctcgtcga ggcgatcgcc atcgagctcg agcgcgacca cggcttcatc
      781 tacgtcagcg acgatcagct gaccgcgtcg gtcaacgtct cgaccgagga gagcgagaac
      841 ttcctcgccc ggctcgaggt cgagctcgcc gaggccgggg acgatgacga cgacgaggac
      901 gacgaggacg aggacggcgc cgactaccgc gcgatcctgg ccgacttcga cccgagcggc
      961 gaccgcctga actgaggccc gccacgccac ccccgacgcg agcgtcagcg gctgaagagg
     1021 acctcgatca cgtcgccgtc ctggactcgg taggtccgac cctccgagcg gagccggccg
     1081 tgcttgcgtg cctcggccat cgagccgagc ttgaccaggt cctcgtaggc gaccgtctcg
     1141 gcgcggatga accccttggc caggtccgtg tggatgacgc cggcggcgtc caccgccgtg
     1201 gccccgtccg ggaccggcca ggcacggacc tcgtccggtc cggcggtcag gaacgagacc
     1261 agcccgagca ggcggtagga cagcgcgatc acccggtcca gtccggactc ggcgatgccc
     1321 agttcctcca tgaacgcggc tgcctcgtcg ggctcgagct cgccgagctc catctcgatc
     1381 cgggccgaca gcgcctcgac catgacgtgc tggtggtgat accccgtggc gacccgggcg
     1441 atgagctcgg gcgctcccgg gatctgcgac tcgcccacgt tgagcaggat gaggaccggc
     1501 ttctgggtca ggaaacggaa cccgcggatc gccttctcct cgtcgggatc gagcgggagg
     1561 tcgcggatcg gtgacccggc ctgcagccct tcgtggagtc gccgcaggac cacctcctcg
     1621 cgctcggccg cctcgcgctc ggcgggggtc ccgtgccgtc cgctgccctg gaggcgttcg
     1681 agccgccgct cggtcatcgc aaggtcggcc agcaggaact cgagatcgag ccgctcgatg
     1741 tcgcgttcgg ggtcgacgct cccgtcggga tgcgggttgg ccgggtcctc gaacgcgcgc
     1801 acgacgtgga ggagcgcgtc ggagtcgcga agccgggcca ggtggtcggc cggcagctcc
     1861 tcggtgccga cgtggccctc ggtcgacggc ggcggggccg gcatgtccac gtacgtgacg
     1921 tcggcatgga cgatcttctt tggcttgaag atcgcggcca gtgcgtcgag gcgcgggtcg
     1981 ggcaccttga cgacgccgac gttgagggtg accccaccgt acccgccggt ctcggcgtgg
     2041 ccccgggtca gcgtgttgaa gacggtcgtc ttgcccgatc cggcaagccc gacgatggcg
     2101 gtctgcatcg cctgattgtg gccgggttca gtacccggcg cttgggtcga ccacgttgag
     2161 cagcggctcg cccgccgcga accggcggag gttgtcgcag aacagctcca cgctgcgatc
     2221 cagcacccgg ccgctggacc acgccgtgtg gggggtgacg atcacattcg gcaggtcata
     2281 gaacgacgac atcgggggca gcggctcgtc gcggaaggtg tcgaggacgg cgccgccgag
     2341 gtggccgtcg cggagcgccc gcaggagcgc ccgctcgtcg atcagccggc cgcgtgcgac
     2401 gttgatgagc cacgcgccgg gcttgaccat cgccagtgtc tcgtcgttga tcatctcctc
     2461 ggtctcgggc gtcagcggcg ccgccagcac gatgaagtcc gactccgaca gcagcgccgt
     2521 cagcgtgtcg ggtccgccga cccggtccag cgcgaccggt ccgaacgacg gctcgtcgtc
     2581 ctcctggtcg gacggatcga accggtcgtg cgtccgtcgc cggaccgcga tgacgcggca
     2641 gccgaagctc gtcgccagcg cgccgaccgc ccgtccgatc gaaccgagcc cgacgatccc
     2701 gaccgtgacg tcgcgaagtt cggtcccctc gagcggctgc cacgtccgct cgcgctggag
     2761 ctcgaggagc tggggcagcc ggcggctgat cgccaggatc atcatcagca cgtactcggc
     2821 gatcggccgg ctgaacacgc cccgggcatt cgtcacgacg agaccccgat ccagcgcggc
     2881 gggcgtcagc gcccgttcca cgccggacgt ggccgaatgg acccagctca tccgcggtgc
     2941 ccgcgccagc agccgatcga acgcctccga gctcagccat ccccggagca tcacctcgac
     3001 gtcatcgacc ggcccgtcgg cgagcccttc gaccgagacc atcacgagcc tcgcgccggg
     3061 cgcggccgcc cggatccgct ccaggtcgcg ggcgcggtag cgggcagaca ggatggggct
     3121 gagggcgatg gcggtggggg cgccgcctgg tccgctgccc ggaccggcat ggcgtttccg
     3181 gccggcgctc tcgggctcgc tcatgccgcc gtcccgtcca ggaccctcgc gacccagcgc
     3241 tcgggtgcct cgatctcccc ggcccgcggc agggtctccg gcccggccca caggtgtgcc
     3301 agcgccgccg gaccacggag cgcggcgatc gcgcggacga actgctcgcc cttcttgtac
     3361 tgctcgtact tgaggtccat gccggtcagc cggagcaccg cgcgctcgaa cggcgtgcgg
     3421 ttcgtccgcc gctcgtggaa ccgggcgctg atccgctcga cgtcggggac gagctcgcga
     3481 ccgacctcgt ccatgacgta gtcgctgaac ccctccagca ggctcatcac ggcctgcacc
     3541 tcgcggaaca gggcctgctg ctcggggccc atcagccgct ccatccagtg ctcccccgtc
     3601 ccctcgccgc ggagcgcgcg ggcgataccc cgcgccgcct cgcgcccgat cccgcgggcg
     3661 tcgctgccga acagggtcag ctggcgttcg aggcgctcgg ccagatacgg ccggagccat
     3721 gggtgcgcct cgaactcgaa ggcgtgcgtc gtctcgtgca gcgcgatcca ggttcggaac
     3781 gggccgatcg gcacgcccag cgcgcgcgcg gtggcgcgga tgttctcctc cacgaacagc
     3841 agccgccccg gcgtcgcttc catcgacagc agcgccaggt cgtactggcc gaggacgcgc
     3901 gtgcccatga acccgagcag gaacccgagc tgccggttgg tgacccatcg attggcgagg
     3961 gccatcgcgg ccttggccag acccccgccc ggcgggacga cctggtcgag caggtccgcc
     4021 tcgatcttgc cgatcagcga cgcgaacgac ccgatgttgg cccggaccca cccggcccgg
     4081 tcgaccacgg ccgtccgctc gacgacgccc ggcagggccg tgcccagcgc ggcggtcaac
     4141 gcggggacga tccgcgtcat cgcctcggcg tatgcgggct cggcggcgcg gagctccgcg
     4201 gcatcgaggg cgcccggggc gccggccagc cggccgacgg cgatccgctc gacctcgtgc
     4261 cagtcgacga gcccgcggcg ggcggcccgt tcggcgtggc gtccgaccac cgtggccacc
     4321 gcgccgaggg ccgagccgac gaggaagcca gcctgccaca cccggtcgtc gcgccacgac
     4381 aggccggccg cgggctgggc gccgcggccg tggcgaccgg atcgcgacga gcgcccgttc
     4441 atcgggcggc gaccgccagc tcgacctgct cgacgtccgg gaagtcggat ccgaacaggc
     4501 ggctggccag caggtggaac tgctccgggt cgccggtggt gagttgcagg tgcagggccg
     4561 gctcggcgtg ctcggcggga cgggtgtgcc cggcgctgcc gggatcggcg gccgttccgc
     4621 gcgacgagcc cggtgcctcg agcccgttga cgctgagcag ctcggccagg gccgaggccg
     4681 tggccgtggc cgaatcgacg atcgcgacgc gctccccgac ctgggccgcg atcaccgctc
     4741 ggagcaacgg gtagtgggta cagcccagca gcagcgtgtc gatcgatgcg ccggccggct
     4801 tcgggaagat gaactcgccc gaggcgtcgc gctcgccgag cagcggcgcc agcgattcgg
     4861 cgacggcggt ctcggcggcc ggcccggaca ggaaccccgc ctcgacgagc gggacgaggg
     4921 cgggcgtcgc gtgctcgtag acctcgaccg ccgggttctc gtccttgatc gccgtgaagt
     4981 aggcatgcga gcggatggtg gccggcgtgg cgatgacccc gacccggcgg ttgcgggtcg
     5041 tgagcgcggc cgtcaccgcg ccgggccgga tcaccccgag gaccggcagg tcgtaacgcc
     5101 gccgcaggtc ggcgatggcg acggccgtcg acgtgttgca ggccacgacg acggccttca
     5161 cgtcgcgctc gaccagcgcg tcgatcgcct cggtggagaa cgcccggacc tcgtcgtcgg
     5221 tccgcgtgcc gtatggcgcg cgcgcgttgt cgccgaggta gacgcagtcg tatcggggca
     5281 gccgctcccg gatcgcccgg tagatggtga gcccgccgaa gccggagtcg aagatgccga
     5341 gacgcacggg aagccatgct acccgaccgc cggcccgccg ggcggagccc gcaagcggcc
     5401 gatccagcgg cccaggctca gg
//
LOCUS       DATDDI010000951         4029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_395362, whole genome shotgun sequence.
ACCESSION   DATDDI010000951 DATDDI010000000
VERSION     DATDDI010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4029
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395362"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VIU37_13930"
     CDS             complement(<1..310)
                     /locus_tag="VIU37_13930"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY6015109.1"
                     /translation="MVDSSPVFIARSSEIALLDAAFARVSAGQPSLVVVGGEAGIGKT
                     RLLEELASRLRDRALFLVGRCIPGQGDHAPYAPFAELFRDLRSQLDGARLAPVFGPAR
                     A"
     gene            464..1348
                     /gene="sigJ"
                     /locus_tag="VIU37_13935"
     CDS             464..1348
                     /gene="sigJ"
                     /locus_tag="VIU37_13935"
                     /inference="COORDINATES: protein motif:HMM:NF007214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigJ"
                     /protein_id="HEY6015110.1"
                     /translation="MNDQDWLAERFEANRSHLRGVAFRMLGSVTEADDAVQEAWIRLS
                     RTDPSDVDNLRAWLTTVVARVCLNMLRSRRTRREASLETHLPDPLLSPEAGLDPEQEA
                     LLGDSVGLAMLVVLDALNPVERVAFVLHDVFAVPFDEIAPIVGQTPTAARQLASRARR
                     RVQGAPVPDVDLDGQWVVVDAFLAAARAGDFERLLAVLDPDVVVRSDGGAARPALVSQ
                     VRGAREAAEQAMSFRRFAETASRVLVNGIPGGVAWSPDGSPFAVLALTVRGGRIVAID
                     VLADPDRLGQLDLSVVAG"
     gene            1443..1904
                     /locus_tag="VIU37_13940"
     CDS             1443..1904
                     /locus_tag="VIU37_13940"
                     /inference="COORDINATES: protein motif:HMM:TIGR00026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HEY6015111.1"
                     /translation="MTAQAGSVARVPRSVSLFSPILQFLLAAGVPLGFNGLITIPGRK
                     SGLPRTTAVAIITVSGRRWIWAPWGEVHWVRNLRAAGRATINVRGRREEVRATELDAT
                     ERIGFFRDVLGPVARGIPLGPWFIRVVDGVDLEDPRAAAEGRVVFELRPVR"
     gene            2054..2401
                     /locus_tag="VIU37_13945"
     CDS             2054..2401
                     /locus_tag="VIU37_13945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015112.1"
                     /translation="MQRGHKITQLPSLEMPARFDPSGIPCVDSSRAHPRPHRRHARSL
                     PGLAPTSLIATVEEVVERGETNWLIWGCVGDRPILFCVAAAGAAEMMKSVAAGEMATA
                     IIEPWQLVLERLD"
     gene            complement(2455..>4029)
                     /locus_tag="VIU37_13950"
     CDS             complement(2455..>4029)
                     /locus_tag="VIU37_13950"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY6015113.1"
                     /translation="DTYRIVLDVLGQVCAERVAPRAAEADEEGAHYASGEVTYAAATR
                     DAIDALRQAELFGAMLSREYGGLNLPESIYQMMVEIVARAESGLMTVYGLQEIASSIE
                     EYADPETKARVLPRFARGEVSGAMVLTEADAGSDLGAVATRATLDEATGRWHLNGVKR
                     FITNGLADVSLVLARSEEGSTDARGLSLFLVERDDTVKIRRIENKLGIHASPTCEIQY
                     ANTPAILIGKRRFGLMRYSMNLMNGARLAVAAQALGIAEAAFREADRYARERVQFGKP
                     IRSLPAVARLLLSMKVEIEATRALLAETGRWVDLWKVHERALGDGGAEADPGIRARHK
                     HCQALAETLTPMVKYAATEMGNRVCNQAMQVHGGVGYMREFNIERLLRDVRVTNIYEG
                     TSQLQVVAAIGKLLNRSLDPLLAEWQAAEYPADMATERVLLGDLTARFDQAVGTLKAM
                     PERDRVEYYAVDLVEMAIGIVGGWLLLRDTRVAEGKKPVARAYLAALEPRVRSAAEVV
                     IASNPAPLEAITVLLR"
BASE COUNT          555 a         1449 c         1424 g          601 t
ORIGIN      
        1 ccgcccgagc aggaccaaac accggcgcga ggcgggctcc gtccaactgg ctccggagat
       61 cgcggaacag ctcggcaaac ggggcgtacg gcgcgtggtc tccctgcccg ggaatgcagc
      121 ggccgacaag gaagagcgcg cgatcccgga gtcgcgacgc cagctcctcg agcagtcgcg
      181 tcttgccgat gccggcctct ccgcccacga ccacgaggga tggctggccg gccgaaaccc
      241 gggcgaaggc ggcgtcgagg agagcgatct cgctcgaacg ggcgatgaac accgggctgg
      301 agtcaaccat cgcgcgcaga gcatacgagt ccccgcgagc cggttttcag catcgcgggc
      361 cgggccgtcc ggcccggatc cggcgctgct gggtggcctc ggtcacgttc gcctcgccac
      421 gcgggtcgat gacatcatcc gggcaaccac aggacggtga cgcatgaacg accaggactg
      481 gctcgccgag cgcttcgagg ccaaccgctc gcacctgcgg ggcgtcgcct tccgcatgct
      541 cggctccgtg accgaggcgg acgacgccgt ccaggaggcc tggatccggc tgagtcgcac
      601 cgatccgagc gacgtcgaca acctacgggc ctggctgacc accgtcgtcg cccgggtctg
      661 cctgaacatg ttgcggtcgc gccgcacgcg ccgcgaagcc tcgctcgaga cgcacctgcc
      721 ggatccgctc ctgagtccgg aggcgggcct ggatcccgag caggaggccc tgttgggcga
      781 ttccgtgggt ctcgcgatgc tcgtggtcct cgatgccctg aaccccgtcg aacgggtcgc
      841 gttcgtgctg cacgacgtgt tcgcggtgcc gttcgacgag atcgcaccga tcgtcggcca
      901 gacgccgaca gcggcgaggc agctcgcgag ccgggcccgg cgccgggtcc agggtgcccc
      961 ggtcccggac gtcgatctcg acggccaatg ggtcgtcgtc gacgcgttcc tcgcggcggc
     1021 tcgcgccggc gacttcgaac gcctcctcgc cgtcctcgac ccagacgtcg tggtccgctc
     1081 cgacggcggg gccgcacgcc cggcgctggt ttcgcaggtt cgtggcgccc gggaggccgc
     1141 cgagcaggcg atgagcttcc ggcggttcgc ggagacggcc tcccgcgtcc tggtcaatgg
     1201 aatcccgggg ggcgtcgcct ggtcccccga cggcagtccg ttcgccgtcc tcgccctgac
     1261 cgtccggggc gggcggatcg tcgcgatcga cgtcctcgcg gatccggacc ggctgggcca
     1321 gctcgatctc agcgtggtcg ccggctgagg ctcaccgccg ccaggcggcg gtcacgtcgg
     1381 cgccgtcccg cgggtcaacc gtgcggcaat ccagggcatc gacccacgaa ggaggcaccc
     1441 acatgaccgc gcaagccggc agcgtcgccc gcgtcccgcg aagcgtctcg ctcttcagtc
     1501 cgatcctcca gttcctgttg gccgccggcg tcccgctggg cttcaatggc ctgatcacga
     1561 tccccggccg gaagagcggc ctgcctcgga ccacggccgt ggcgatcatc acggtctccg
     1621 gcaggcgctg gatctgggct ccgtggggcg aggtccactg ggtgcgcaac ctgcgcgccg
     1681 ccggccgcgc gacgatcaac gtgcgaggcc ggcgcgagga ggtccgggcg accgagctgg
     1741 acgcgaccga acgcatcggt ttcttccgcg acgtcctcgg tccggtggct cgaggcatcc
     1801 cgctcgggcc ctggttcatc cgcgtcgtcg atggggtcga tctcgaggat ccgagggcag
     1861 cggccgaggg ccgggtggtc ttcgagctcc gtccggttcg gtgacggcgc cgggcgaggc
     1921 cggctgggac cgagcccgag tccccgccca gttcatgaca aacgcctctg gaagccctcg
     1981 acgacgccgc gcatcctcgc catcggagtc gcgccttcga agccggccac agtgcgtcca
     2041 gggagtcgtc gccatgcaac gcggccacaa gatcacgcag ctgccgtcgc tggagatgcc
     2101 ggcccgcttc gacccgtcgg gaatcccgtg cgtcgattcg agccgagcgc acccccgccc
     2161 gcaccggcgc catgctcgct cgcttccggg gctcgccccc acctcgctca tcgcgaccgt
     2221 cgaagaggtg gtcgaacgcg gcgagaccaa ctggctcatc tgggggtgcg tcggcgatcg
     2281 gccgatcctg ttctgcgtcg cggcggccgg ggctgccgag atgatgaagt cggtggccgc
     2341 aggcgagatg gcgacggcga tcatcgagcc ctggcagctc gtgctcgaac ggctcgacta
     2401 gcggcaccag gcccgaccgc cccacgtcgc gaacgggagc gcgcgccgcc gacgctaccg
     2461 aagcaggacg gtgatcgcct cgagcggtgc cgggttggag gcgatgacga cctcggccgc
     2521 cgaccggacc cttggttcga gcgccgcgag gtatgcccgg gcgaccggct tcttgccctc
     2581 ggcgacgcgg gtgtcgcgga gcaggagcca gccgccgacg atcccgatcg ccatctcgac
     2641 caggtcgacc gcgtagtact ccacccgatc gcgctccggc atggccttga gcgtgccgac
     2701 ggcctggtcg aagcgcgccg tgaggtcgcc caggagcacg cgttccgtgg ccatgtcggc
     2761 cggatactcg gcggcctgcc actcggccag cagcgggtcg agcgagcggt tgagcagctt
     2821 gccgatcgcc gcgacgacct ggagctggct cgtgccctcg tagatattcg tgacccggac
     2881 gtcccgcagc aggcgctcga tgttgaactc gcgcatgtag cccacgccgc cgtggacctg
     2941 catcgcctgg ttgcagacgc ggttgcccat ctcggtggcg gcgtacttga ccatcggggt
     3001 gagggtctcg gcaagggcct ggcagtgctt gtgacgggcg cggatccctg gatcggcctc
     3061 ggcgccgccg tcgcccaggg cgcgctcgtg gaccttccag aggtccaccc agcgcccggt
     3121 ctcggccagc agcgcgcggg ttgcctcgat ctcgaccttc atcgagagca gcaaccgggc
     3181 caccgccggc aggctccgga tcggcttgcc gaactggacg cgctcgcgag cgtaccggtc
     3241 ggcctcgcgg aacgccgcct cggcgatgcc gagcgcctgg gcggctaccg ccagacgggc
     3301 gccgttcatc aggttcatcg agtagcgcat gagtccgaat cggcgcttgc cgatgaggat
     3361 ggccggggtg ttcgcgtact ggatctcgca ggtcggcgag gcgtggatcc cgagcttgtt
     3421 ctcgatccgg cggatcttca cggtgtcgtc gcgctcgacg aggaagagcg acaggccgcg
     3481 ggcgtcggtc gagccctcct cgctgcgggc gaggaccagc gacacgtccg ccagcccgtt
     3541 ggtgatgaag cgcttgaccc cgttgaggtg ccagcggccg gtggcctcgt cgagcgtcgc
     3601 tcgcgtcgcc acggcgccga ggtccgagcc ggcgtccgct tcggtgagga ccatcgcccc
     3661 ggagacctcg ccgcgtgcga accggggcag gacgcgagcc ttcgtctcgg gatcggcgta
     3721 ctcctcgatc gacgaggcga tctcctgtag gccgtacacg gtcatcagcc cgctctccgc
     3781 ccgggccacg atctcgacca tcatctggta gatcgactcg gggaggttca ggccgccgta
     3841 ctcgcgtgac agcatcgccc cgaagagctc ggcctggcgc agggcgtcga tcgcatcccg
     3901 tgtcgccgcg gcataggtga cctcgccgct cgcgtagtgc gcgccctcct cgtcggcctc
     3961 ggccgcccgg ggcgccaccc gctccgcgca gacctggccg aggacgtcga gcacgatccg
     4021 gtacgtgtc
//
LOCUS       DATDDI010000952         1689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_124555, whole genome shotgun sequence.
ACCESSION   DATDDI010000952 DATDDI010000000
VERSION     DATDDI010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124555"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..532
                     /locus_tag="VIU37_13955"
                     /pseudo
     CDS             155..532
                     /locus_tag="VIU37_13955"
                     /inference="COORDINATES: protein motif:HMM:NF024694.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
     gene            587..>1689
                     /gene="ligD"
                     /locus_tag="VIU37_13960"
     CDS             587..>1689
                     /gene="ligD"
                     /locus_tag="VIU37_13960"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEY6015114.1"
                     /translation="MRTSGRGRRRGADEGGRLPFEDDQGDQWLLLHKRDADAEAGWDA
                     EDHPKSVKTGRTNDEVKAAKDAIWVSHAPAATAEIDLSKAREQPMPSFVEPMAATLTD
                     HAFDDPEWLFEVKWDGYRIEAVVRDGNAKLFTRNGKDGESYFPGLLTPATWINAEQAI
                     VDGEVVALDADGKPQFSLLQELTGTASPKFVYQVFDLLYLAGRSLLHVPLEDRKALLR
                     TVLRSGDRRVRYADHVLTEGTAFLDAAAAQGLEGILAKHRRSVYDPGIRSKAWLKVKH
                     RPEQELVVGGFTPGEGAAADLGAVVVGVYERDAQDGGKAKLRFAGKVGSGFSAATRRS
                     MRKRLQALAIHEPPFDPPPPKDYKGRWGGDLKHV"
BASE COUNT          272 a          602 c          604 g          211 t
ORIGIN      
        1 ccgtctcgga ggccaaggcc gccaaggaag ccaaggcggc cgaggcgacg acctcgcgcc
       61 gaaaggctac gagccgcgac gaggacgagg caccggccaa gcccgcccgg aagcgcaaga
      121 cggcctgatc cggcgctgac ggcgccgcgc atcgatgccg ctcgaggaat accgccgcaa
      181 gcgcgatttc gcgcggaccc cggagcctgc gccatcgccc gcgggcggga cgacgagcgg
      241 gtcccggagc ggtcgctacg tcgtccagcg ccaccgcgcg acgcggctcc actacgactt
      301 ccggctcgag gtcgacggcg tgctggcctc gtgggccgtc ccgaagggcc cgagcctcga
      361 tcccgcggcg cgccgcatgg cggtgcacgt cgaggaccac ccgctcgagt acttcgattt
      421 cgagggcgtc atcccgaagg gcgagtacgg ctgaggcgac gtcatcgtct gggactgggg
      481 cacctggacc cccgatccgg agacgccgga cccggtcaag gcgatcgccg acggcgagct
      541 caagttcagc ctccatggcg agaagctgcg gggccggttc acgatcgtgc ggacgtccgg
      601 ccggggccgt cgccgaggtg ccgacgaggg cgggcgcctg ccgttcgagg acgaccaggg
      661 cgaccagtgg ctgctcctcc acaagcgcga cgcggatgcg gaggccggct gggacgccga
      721 ggatcatccg aagagcgtca agaccggccg caccaacgac gaggtcaagg cggccaagga
      781 cgcgatctgg gtgagccacg ctcctgccgc caccgccgag atcgacctct cgaaggcccg
      841 cgagcagccg atgccgtcgt tcgtcgagcc gatggcggcg accctcaccg accacgcgtt
      901 cgacgacccg gagtggctgt tcgaggtcaa gtgggacggc taccgcatcg aggcggtcgt
      961 ccgcgacggc aacgcgaagc tgttcacccg aaacggcaag gacggcgagt cgtactttcc
     1021 cgggctgctc acgccggcca cctggatcaa tgccgagcag gcgatcgtcg acggcgaggt
     1081 cgtcgcgctc gatgccgacg ggaagcccca gttcagcctg ctccaggagc tgacgggcac
     1141 ggcctcgccg aagttcgtct accaggtgtt cgacctgctc tacctcgccg gccggtcgct
     1201 gctccatgtc ccgctcgagg accgcaaggc cctcctgcga acggtcctgc gctccggcga
     1261 ccgccgggtc cgatatgccg atcacgtcct caccgagggc acggccttcc tcgacgcggc
     1321 ggcggcgcag ggtctcgagg gcatcctcgc caagcaccgt cgctcggtct acgacccggg
     1381 catccgctcg aaggcctggc tcaaggtcaa gcaccgcccc gagcaggagc tcgtcgtcgg
     1441 cgggttcacg ccgggcgagg gggcggccgc cgacctcggt gcggtcgtcg tcggggtcta
     1501 cgagcgggac gcgcaggatg gcgggaaggc caagctgcgg ttcgcgggca aggtcggctc
     1561 cggcttcagc gccgcgacgc ggcgctcgat gcggaagcgc ctgcaggccc tcgccatcca
     1621 cgagccgccg ttcgatccgc caccgccgaa ggactacaag ggccgctggg gcggcgacct
     1681 gaagcacgt
//
LOCUS       DATDDI010000953         1738 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_457183, whole genome shotgun sequence.
ACCESSION   DATDDI010000953 DATDDI010000000
VERSION     DATDDI010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457183"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VIU37_13965"
     CDS             complement(<1..600)
                     /locus_tag="VIU37_13965"
                     /inference="COORDINATES: protein motif:HMM:NF036634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015115.1"
                     /translation="MTLVGARPVRAPRGPQLTCRGWEQEAALRMLMNNLDPEVAEDPD
                     NLVVYGGTGRAARSWAAFDAIVRELRRLESDETLLVQSGKPVGVLRTHPWAPRVLIAN
                     SNLVGRWATWEVFRELERAGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARRHFGG
                     TLRGTVTLTAGLGGMGGAQPLAVTMNEGVCLAIEVDEARA"
     gene            complement(612..1283)
                     /locus_tag="VIU37_13970"
     CDS             complement(612..1283)
                     /locus_tag="VIU37_13970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015116.1"
                     /translation="MRMPSGAIRIAAALVLVSLAIIGCGPSATVSPNPAGSVSVPPVP
                     ASGTVGGSPAPAATPASSAGSAGSGAGLVVDASLLHVLPAQVAGVPLEADPTTAAQIA
                     ADPTVADSAQAIAVALAIRPGTSTADDLAIVSVIRLRPGVFSEAWFGNWRATYDQGAC
                     DVAGGVKGQPTRATMGGRTVFVGTCAGDAQTYHVQLADPTLIVSITAAGPAHFGELVV
                     AGLAE"
     gene            complement(1280..>1738)
                     /locus_tag="VIU37_13975"
     CDS             complement(1280..>1738)
                     /locus_tag="VIU37_13975"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY6015117.1"
                     /translation="APATPRRPSVAADAPRTLQLLGRGLGVVGSYAKVLLRDDRPQAY
                     AQFGPLTAYPRAQRTRDLYPALPDSPLPAVITCIATTADARRLGLAHRLVEAVCADLA
                     DRGFTAVETYPTAGAAADATSAATPEFWESAGFARAIDDERFPVMRRELG"
BASE COUNT          232 a          631 c          666 g          209 t
ORIGIN      
        1 ggcccgcgcc tcgtcgacct cgatcgcgag gcagaccccc tcgttcatgg tcacggccag
       61 cggctgggcg ccgcccatgc cgccgagccc ggcggtcagg gtcaccgtcc cgcgcagggt
      121 cccgccgaag tgccggcgag ccagctcggc gaacgtctcg tacgttccct ggaggatccc
      181 ctgggtcccg atgtagatcc aggacccggc ggtcatctgg ccgtacatca tcaggccggc
      241 tcgctcgagc tcgcggaaga cctcccaggt cgcccatctg ccgacgaggt tcgagttggc
      301 gatgaggacc cggggcgccc acgggtgcgt ccgcaggact ccgacgggct tgcccgactg
      361 gacgagcagg gtctcgtccg attcgaggcg gcggagctcg cggacgatgg catcgaaggc
      421 ggcccagctg cgcgccgcgc ggccggtgcc gccgtagacc accaggttgt ccgggtcctc
      481 ggcgacctcc ggatccaggt tgttcatcag catccggagg gccgcctcct gctcccagcc
      541 gcggcaggtc agctgcgggc cgcgaggagc gcggacgggg cgggcgccga cgagggtcat
      601 cgtcgcctag gctactccgc cagcccggcc accacgagct cgccgaagtg ggcgggtccg
      661 gccgccgtga tcgacacgat cagcgtcggg tcggcgagct ggacgtgata cgtctgcgcg
      721 tcgccggcgc acgtgcccac gaagacggtc cggcccccca tcgtcgcgcg cgtcggctga
      781 cccttgaccc cgccggccac gtcgcaggca ccctggtcgt aggtcgcacg ccagttcccg
      841 aaccacgcct cgctgaagac gccggggcgg agccggatca cgctgacgat cgccaggtcg
      901 tcggcggtcg aggtcccggg gcggatcgca agcgcgaccg cgatcgcctg cgccgaatcg
      961 gcaaccgtcg ggtcggcggc gatctgggcg gcggtcgtcg ggtcggcttc cagcgggacg
     1021 ccggcgacct gggcgggcag gacatgcagg aggctcgcgt ccacgacgag cccggcgccc
     1081 gaccccgcgg agccggccga ggaggcgggc gtggcggcgg gggcgggcga gccgccaacc
     1141 gtccccgaag ctggcaccgg cgggacggag acggagccgg cggggttcgg gctgaccgtc
     1201 gcggacggtc cgcagccgat gatcgcgagc gacacgagca ccagggccgc ggcgatccgg
     1261 atggcgccgg acggcatcct cacccgagct cgcggcgcat gaccgggaag cgctcgtcgt
     1321 cgatggcccg cgcgaacccg gccgactccc agaactcggg cgtcgccgca ctggtcgcgt
     1381 cggctgccgc cccggccgtc gggtacgtct cgaccgcggt gaagccccgg tcggcgaggt
     1441 cggcgcagac ggcctccacg agccggtggg ccagtcccag gcggcgggcg tcggcggtcg
     1501 tcgcgatgca ggtgatgacc gccggcagcg gcgaatcggg gagcgccggg tagaggtcgc
     1561 gcgtccgctg cgcccgggga tacgcggtga gcggtccgaa ctgcgcgtag gcctgcgggc
     1621 gatcgtcgcg aagcagcacc ttggcgtaac tgccgacgac gcccagcccc cgcccgagca
     1681 gctgcagcgt gcgaggcgcg tcggccgcca ccgacgggcg cctgggcgtg gccggtgc
//
LOCUS       DATDDI010000954         2145 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_457193, whole genome shotgun sequence.
ACCESSION   DATDDI010000954 DATDDI010000000
VERSION     DATDDI010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457193"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..778
                     /locus_tag="VIU37_13980"
     CDS             146..778
                     /locus_tag="VIU37_13980"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY6015118.1"
                     /translation="MTLVSVIIPTYQRPRLLMDRAIPSVLAQTVQDQEVIVVGDGTDA
                     QTCIEMGELVKVDRRFRFVNLPHYPYPESHDLAWGLLGLAALNWGLDHAQGEWISVLG
                     DDDEYLPNHHEVLLEAAARTAADHVYGIAETYKAGHPIGQQYGSWPPGDGAFCNGANL
                     YRASLGYRYSLDCTANGRTGDADLWTRMREDGVRFHFEPKVVLRYHRNWP"
     gene            951..1664
                     /locus_tag="VIU37_13985"
     CDS             951..1664
                     /locus_tag="VIU37_13985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015119.1"
                     /translation="MIPVMIVPILTEPERLERLLDSIDHPLGLMVVIDNGGVVDPFGG
                     ARHMRHFPIHVVKPGWNLGVAASWNLGIKCSPLAPWWVIANHDIEFGPGDLARLEAAV
                     EPRANAVYYTLGMAAFAVTPPAMAAVGWWDEQIMPAYDEDLDWQRRARLVGTVEVEVG
                     FTGSHAGSATIYSDPRLRHANGRTHQANDAYYAAKWGGPKQGGETFSTPFNRGGHVGD
                     WRLDINRLRDLTWPRPKED"
     gene            1668..1994
                     /locus_tag="VIU37_13990"
     CDS             1668..1994
                     /locus_tag="VIU37_13990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015120.1"
                     /translation="MASAVVVTPASGSITHLSTAVEVTCTGAASNTATGYDTTKYPTE
                     PALDRYFKAALAGQPTLKSPVFNTNAAEVAEWHDVIFPAAGSWTVTLNFASDDSVDAT
                     ATVVVS"
BASE COUNT          338 a          776 c          742 g          289 t
ORIGIN      
        1 cgcgtgacta cgccacctac gtgtggctgc tctacgggaa ggtcgtcaag gacaactcgc
       61 ccgagcggat cgcattcctc cacgggccga agcgcgaccg cttcaacaat ccgctgccgg
      121 acctcgggca gcaggtgtgc atgagatgac attggtgtcg gtcatcatcc cgacgtacca
      181 gcgcccgcga ctgctgatgg accgggcgat cccctcagtc ctcgcccaga ccgtgcagga
      241 ccaggaggtc atcgtcgtcg gcgacgggac cgatgcgcag acctgcatcg agatggggga
      301 actggtcaag gtggaccggc gcttccggtt cgtgaacctg ccgcactacc cgtaccccga
      361 gagccacgac ctcgcgtggg gactgctcgg gctcgcggcg ctcaactggg gcctcgacca
      421 cgcgcagggc gagtggatca gcgtcctcgg cgatgacgac gagtacctgc cgaaccacca
      481 cgaggtgctg ctcgaagcgg cggcccggac cgccgcggac cacgtctacg ggatcgccga
      541 gacgtacaag gcgggccacc ccatcggcca gcagtacggc tcgtggccgc cgggcgacgg
      601 ggcgttctgc aacggggcga acctctaccg ggcgagcctc ggctaccgct acagcctcga
      661 ctgcaccgcg aacgggcgga cgggcgacgc ggacctgtgg acgaggatgc gggaggacgg
      721 ggtgcggttc cacttcgagc ccaaggtcgt gctccgatac caccgtaact ggccgtgagc
      781 ggcacgcgcc cgtcccgcgg gcggcggtgg acctcacgcg acgacaaccc ggccgcggtc
      841 gagacgcgcc gcagggcgcg gcggcaggac tgcccggtcg acctcgactg cgactggtcc
      901 gcagaggtgg atgacgtcca cgccctgatc gcgcacttga gggagcacaa gtgatcccgg
      961 tcatgatcgt ccccatcctg acggagcccg agcgtctgga gcgcctgctc gactccatcg
     1021 accacccgct gggcctgatg gtggtgatcg acaacggcgg ggtcgtggac ccgttcggcg
     1081 gggcgcggca catgcgccac ttcccgatcc acgtcgtcaa gcccggctgg aacctcggcg
     1141 tcgcggcgtc gtggaacctc ggcatcaagt gcagtccgct ggccccgtgg tgggtcatcg
     1201 ccaaccacga catcgagttc ggccccggcg acctcgcccg gctggaggcc gcggtcgagc
     1261 cgcgggccaa cgcggtctac tacacgctcg gcatggccgc cttcgccgtc acgccgcccg
     1321 cgatggcggc ggtcggctgg tgggacgagc agatcatgcc cgcctacgac gaggacctcg
     1381 actggcagcg gcgggcccgg ctcgtcggga cggtcgaggt cgaggtcggc ttcaccgggt
     1441 cccacgcggg gtccgccacc atctactccg acccgcggct gcgccacgcg aacggccgca
     1501 cgcaccaggc gaacgacgcc tactacgccg ccaagtgggg cggccccaag cagggcggcg
     1561 agacgttctc gacccccttc aaccgcggcg gccatgtcgg ggactggcgc ctcgacatca
     1621 accgcctgcg ggacctgacg tggccccggc cgaaggagga ctagagcatg gcatcggcag
     1681 tcgtcgtcac cccggcctcg gggtcgatca cccacctctc gaccgcagtc gaggtcacct
     1741 gcacgggcgc cgcgtcgaac acggccaccg gctacgacac cacgaagtac ccgaccgagc
     1801 ccgcgctcga ccgctacttc aaggccgccc tcgcgggcca gccgaccctc aagagcccgg
     1861 tgttcaacac caacgcggcc gaggtcgcgg agtggcacga cgtcatcttc ccggccgccg
     1921 gctcgtggac ggtgaccctg aacttcgcct cggacgacag cgtggacgcc accgcgacgg
     1981 tggtcgtctc gtagcatggc gatcccgcgg acggggatgc tcggcgcctc ggcgccgggc
     2041 agcatctggc tcggggcgct gccgatctgg tcggccgggc cgcgggcgct gccgcacctg
     2101 cggtccacga tctcggggtc cgagccgtcc gcggcgatgg gctcg
//
LOCUS       DATDDI010000955         1891 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_166484, whole genome shotgun sequence.
ACCESSION   DATDDI010000955 DATDDI010000000
VERSION     DATDDI010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166484"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1742
                     /locus_tag="VIU37_13995"
     CDS             <1..1742
                     /locus_tag="VIU37_13995"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEY6015121.1"
                     /translation="TFMVLAPEHPLVAKLTHPDKRDEVTAYVERARRETEIERLSTER
                     EKTGVAIGADAINPVNGERIPIFIADYVLSGYGTGAIMAVPAHDERDFAFARKFGLDI
                     RRVVATPGVDAAAPMEDAYVAHATDEHLVNSGRFDGMTADEGGAAIVSWLAETGRAEP
                     KVTYRLRDWLISRQRYWGTPIPVIYCERDGIVPVPDDQLPVLLPETVDYAGSGDNPLN
                     HDEAFLRVDCPRCGQPARRETDTMDTFIDSSWYWYRYLSPDKADGPIDRATTDRWTPV
                     DQYTGGAEHAVMHLLYSRFFTKAMADCGLIAEREPFKRLFNQGQILGADGERMSKSRG
                     NVQDPDELVSRYGADTVRLFLMFMGPWDQGGPWSPTGIGGVYRFLNRVWTLVLDPHGR
                     EPGDPEAGTLPASQSPADARAALRSAAHRTLRDVSADYEAFRFNTMIAKLMELANTLF
                     RYRGTEIAGGDEWNETIRLLLTMLAPAAPHISEELWSRRLAEAGEGWTSIHEQAWPDV
                     DPAAVVESTREIPVQVNGKLRDKVVVASDATEAEIQAAVLARERIMAILDGRTPDRVV
                     LAGGGKLVNLVVR"
BASE COUNT          299 a          688 c          643 g          261 t
ORIGIN      
        1 cgaccttcat ggtcctggca cccgaacacc cgctggtcgc gaagctgacc catcccgaca
       61 agcgggacga ggtgaccgcc tacgtcgagc gcgcccgccg agagaccgag atcgagcgcc
      121 tgtcgaccga gcgcgagaag accggcgtcg cgatcggcgc cgacgcgatc aacccggtca
      181 acggcgagcg gatccccatc ttcatcgccg actacgtgct gtccggctac ggcaccggtg
      241 cgatcatggc cgtgcccgcc cacgacgagc gcgacttcgc gttcgcccgg aagttcgggc
      301 tggacatccg gcgggtggtc gccacgcccg gtgtggacgc cgcggctccg atggaggacg
      361 cctacgtcgc gcacgccacc gacgagcacc tggtcaacag cggccggttc gacgggatga
      421 cggccgacga aggcggggcg gcgattgtca gctggctggc cgagaccgga cgggccgagc
      481 ccaaggtcac ctaccgcctg cgcgactggc tgatctcgcg ccagcgctat tggggcacgc
      541 cgatcccggt catctactgc gagcgagacg ggattgtgcc ggttcccgac gaccagctgc
      601 cggtcctgct gcccgagacc gtcgactacg ccggcagcgg cgacaacccg ctcaaccacg
      661 acgaggcctt cctgcgcgtg gactgccccc gctgcggcca gcccgcccgg cgagagacgg
      721 acacgatgga cacgttcatc gactcgtcct ggtactggta tcgctacctg tctcccgaca
      781 aggccgacgg cccgatcgac cgcgcgacga ccgaccgctg gacgccggtc gaccagtaca
      841 ccggcggcgc cgagcacgcg gtcatgcacc tgctgtacag ccgcttcttc accaaggcga
      901 tggccgactg cgggctgatc gccgagcgcg agccgttcaa gcggctgttc aaccagggcc
      961 agatccttgg cgcggacggc gagcgcatgt ccaagtcgcg cggcaacgtc caggaccccg
     1021 acgagctggt ctcccggtac ggcgccgaca ccgtccgcct gttcctgatg ttcatgggtc
     1081 cgtgggacca gggtgggccg tggagcccga ccgggatcgg cggtgtgtac cgcttcctga
     1141 accgcgtctg gacgctcgtc ctggacccgc atggccgcga accgggcgat cccgaggccg
     1201 gcacgctgcc tgcctcgcag tcgccggccg acgcgcgagc ggcgcttcgc tcggccgcgc
     1261 accgcacgct gcgcgacgtc tccgcggact acgaggcgtt ccgcttcaac acgatgatcg
     1321 ccaagttgat ggagctggcc aacacgctct tccggtatcg cggcacggag atcgccgggg
     1381 gcgacgagtg gaacgagacc atccgcctgc tgctgacgat gctggcaccc gcggcgccgc
     1441 acatcagcga ggagctctgg agccgccggc tggcggaggc cggggaaggc tggacctcga
     1501 tccacgagca ggcctggccc gatgtggatc ccgccgccgt cgtcgagtcc acccgggaga
     1561 tccccgtcca ggtcaacggc aagctccgcg acaaggtcgt ggtcgcctcc gacgccacgg
     1621 aagccgagat ccaggccgcc gtcctcgcgc gtgagcggat catggccatc cttgacggac
     1681 ggacgcccga tcgcgtcgtc ctcgccggcg gcgggaagct cgtgaacctg gtggtccgct
     1741 gactccccgc gggagtcgtg ccaccggtgg ctgatcgatc ggcgcagggc gtgaagatcc
     1801 cgtaccacgc cgatacgccg accggcgtcg ccctcgccct cgacgtcgat ccaggcgtcg
     1861 gactcacggc ggacgaagcc cggcgtcgcg c
//
LOCUS       DATDDI010000956         1715 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_665859, whole genome shotgun sequence.
ACCESSION   DATDDI010000956 DATDDI010000000
VERSION     DATDDI010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665859"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1659
                     /locus_tag="VIU37_14000"
     CDS             <1..1659
                     /locus_tag="VIU37_14000"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0045227 - capsule polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEY6015122.1"
                     /translation="VNRRPIVMVPALLAVALVLTALGLGVGSAWTGLGGASVPPSASP
                     VPNEPAGPSTASVSSEPPSAPASAPAPSASATPVAAEPDARVPIVPVVNFRNTATASS
                     LADVKAILAGTSSRYQAVELIDGEADAILLALGVERPAAPGRLVLARDAAQLAADLTR
                     SGKRLAFLRADEVTPAVRALSWGGAELYGVDRVRTLAAWPLSASLPVAPAGQAFDPAA
                     TWTLFAGGDMLLDRGVYQTVKLRRKGIDFPFDGGTAEITSRYCCSTFGWELPRTQRTG
                     NAGAVRGLIEGADLAIANFENPAPDKPRYHTSGTTFSADPALIAGIADAGIDYVSLAN
                     NHIRDAGGAGLLQTIANLKQDGIASSGSGKNLAAARKPGVFTVDGTKVAILAYDAIAA
                     GYHATATRIGSAPLVAGYVREDVKAARAAGADVVIVFPHWGTEYKSKPFAGQQQLARM
                     IIDAGADMVIGNHAHWAAAMEVYKGKPIWYALGNFVFDQTWSEPTMEGITLELTFRGA
                     TLAQVRIRPHIILDKAQPNFLDPAGDGKIVMGRVYSASKGLLPW"
BASE COUNT          247 a          632 c          603 g          233 t
ORIGIN      
        1 gtgaaccgcc gaccgatcgt catggtgccg gccctgctgg ccgtcgcgct ggtgctgacc
       61 gcgctcggcc tcggggtggg gtccgcgtgg acgggactgg gcggcgcctc ggtgccgccg
      121 tcggcgagcc ccgtcccgaa cgagccggcg ggtccgtcga cggcctccgt ctcgagcgag
      181 ccgccgtccg ccccagcgtc cgcgccggct ccgtccgcca gcgccacgcc ggtcgcggcg
      241 gaacccgacg cccgggtgcc catcgtcccg gtcgtcaact tccggaacac cgcgaccgcc
      301 tcgagccttg ccgacgtcaa ggccatcctg gccgggacca gctcgagata ccaggccgtc
      361 gagctgatcg acggcgaggc cgacgcgatc ctcctcgcgc tcggcgtcga gcggccggcg
      421 gcacccggtc gcctggtgct cgcccgggac gcggcgcaac tcgcggccga cctcacccgg
      481 agcggcaagc ggctcgcatt cctccgcgcc gacgaggtca cgccggccgt ccgcgccctg
      541 tcgtggggcg gcgccgagct gtatggcgtg gaccgggtcc ggaccctcgc cgcgtggccg
      601 ctgtccgcga gccttccggt ggcgccggcc ggccaggcct tcgacccggc ggcgacctgg
      661 accctgttcg ccggcggcga catgctcctc gaccggggtg tctaccagac ggtcaagctg
      721 cgccgcaagg gcatcgactt cccgtttgat ggcggcacgg ccgagatcac cagccggtac
      781 tgctgctcga ccttcggctg ggagctgccg aggacgcagc ggaccgggaa cgccggggcc
      841 gtccgcggcc tcatcgaggg cgcggacctg gccatcgcca acttcgagaa ccccgcgccg
      901 gacaagccgc gctaccacac gtcgggtacg accttctcgg cggatccggc gctgatcgcg
      961 gggatcgccg acgcggggat cgactacgtg tcgctcgcca acaaccacat ccgggacgcc
     1021 ggtggggcgg gcctcctgca gacgatcgcc aacctcaagc aggacgggat cgcgtcatcc
     1081 ggctcgggca agaacctcgc cgcggcacgc aagcccggcg tgttcaccgt ggatgggacg
     1141 aaggtcgcca tcctcgccta cgacgcgatc gcggctggct atcacgcgac cgcgaccagg
     1201 atcggcagcg cgccgctggt ggccggctac gtccgtgagg acgtgaaggc ggcccgggcc
     1261 gcgggcgcgg acgtggtgat cgtcttcccg cactggggca ccgagtacaa gtcgaagcca
     1321 ttcgcgggtc agcagcagct ggcacggatg atcatcgacg ccggcgccga catggtcatc
     1381 ggcaaccacg cccactgggc ggcggcgatg gaggtctaca agggcaagcc gatctggtac
     1441 gcgctcggca acttcgtgtt cgaccagacc tggtccgagc cgaccatgga ggggatcacc
     1501 ctcgagctca ccttccgcgg cgccacgctc gcccaggtgc ggatccggcc gcacatcatc
     1561 ctcgacaagg cgcagcccaa cttcctcgac cccgccggcg acggcaagat cgtcatgggc
     1621 cgggtctact cggcctcgaa ggggctgctg ccctggtgat ctgagtagag cccgagaggt
     1681 gcgcaggcag tgaccgaaca tgcctgggtg gactg
//
LOCUS       DATDDI010000957         4151 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_41507, whole genome shotgun sequence.
ACCESSION   DATDDI010000957 DATDDI010000000
VERSION     DATDDI010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 4151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4151
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41507"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..323
                     /locus_tag="VIU37_14005"
     CDS             <1..323
                     /locus_tag="VIU37_14005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015123.1"
                     /translation="HVIDAGLETHEAVIGDAAVQAAWETAEAATVGAPPGPTPVVRVP
                     PEVAGVRLVVHSGERVDLVWTVPSDAASRGGAASQWLVGCHIPGHWAKGMQVPVRWVT
                     GSTP"
     gene            394..681
                     /locus_tag="VIU37_14010"
     CDS             394..681
                     /locus_tag="VIU37_14010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018287374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HEY6015124.1"
                     /translation="MTYVIAEPCIDVLDLACVSVCPVDCIHYDEGTDRKLFIDPNECI
                     DCGACEPECPVNAIFPEESLPPEWAKFTVMDATWYTDKAAARAMVDEAKPS"
     gene            740..1669
                     /locus_tag="VIU37_14015"
     CDS             740..1669
                     /locus_tag="VIU37_14015"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HEY6015125.1"
                     /translation="MRIVSLLPSATEIVYALGLGDDLVAVTHECDYPPEAAGKPVVTR
                     SVHDLAGTSSREIHRLVSAAVHGGSSLYALDEVALAESHPDLILTQELCRVCAVSYRE
                     VNEVARAIDADITVVSLEPTSIEGILNTITTVGAMTETEDTAIDLVESLRERLGAIEQ
                     LVQSRRDGGQRSPRVVGLEWLDPPFAVGHWVPEQIRRAGGWDLLGADGEPSRQTGWDA
                     IAEVDPEMLLLMPCGFHLAGTVRAWAELARPPEYRELAAVRRDQVFAVDGSAYFSRPG
                     PRVIDGIELLAEIFDPEAFVDVSPPGSWTPVEP"
     gene            1677..2621
                     /locus_tag="VIU37_14020"
     CDS             1677..2621
                     /locus_tag="VIU37_14020"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY6015126.1"
                     /translation="MPFRATFDCLWCGNPHACRGTDDLEGWAQLCPTCIGKAGDNGFL
                     RFRLHQALTERGAASGAPAAATASGAPAGGTAATTPAVTVEPRTDRDAEMLAYYEARA
                     PEYDDWYLRRGRFARGPIHDAAWNAELDAAGRWLDGLPIRGEIVELAAGTGWWSPLLA
                     SKGELSLYDGAAAPLDRARERLVAHGLRAHLHVRDAWAEPDRPVDAVFAGFWLSHVPR
                     DRLDAFLGLVRRWLAPGGLFAFIDSRFDPQSSAVDHPTPAGDTSVRRLDDGREFTVVK
                     VYYEPAELEAALARAGFESAQVTSTGRFFLTGVAHVSR"
     gene            2660..3529
                     /gene="proC"
                     /locus_tag="VIU37_14025"
     CDS             2660..3529
                     /gene="proC"
                     /locus_tag="VIU37_14025"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEY6015127.1"
                     /translation="MSPLANSTIATVGSGVMAEAMIAGILRGKLVDPGQVVASHPRPE
                     RREHLAREYGIRTVASNVEAVEAADVVIFGIKPQMLGKVGREIGPRLHRGQLVLSVLA
                     GATTAALTGILGHDQVVRSMPNTPARLGKGMTVWYATPECTDGQRAQAAALLGALGHQ
                     IEADDEKMVAMATAVSGTGPTYVFLVMEALIDAAVHLGFPRHIAHDLVIETLEGSTLF
                     AKQSGMHPAELRNMVTSPGGTSAAALHELESGRLRTVLSEAVWAAYRRTVELGDQLEA
                     SVTASGDPRPGAR"
     gene            3591..>4151
                     /locus_tag="VIU37_14030"
     CDS             3591..>4151
                     /locus_tag="VIU37_14030"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY6015128.1"
                     /translation="MAGTQAPNAAATILPVEALVAVDSPREFRLHPRDRLVAYTAEAA
                     GTRQLFSLSLRGGYPTQLSASEKPISDPQWSPDGRRIAYHRDDEVWVMEADGSRLTRV
                     VAKPGGGRQARWSPDGRRLAFISRRRGWSQIWLIDAPVPRRGRPATDPKPPEPAVLTE
                     AGIDVEEYEWSPDGSAIAVMAQRDPEP"
BASE COUNT          548 a         1552 c         1488 g          563 t
ORIGIN      
        1 tccacgtcat cgacgcaggg cttgagaccc acgaggccgt gatcggtgac gcggcggtcc
       61 aggccgcctg ggagaccgcc gaggcggcca cggtgggggc gccgcccggc ccgacgccgg
      121 tggtgcgggt cccgcccgag gtcgccggcg tgcgtctggt cgtccactcg ggcgagcggg
      181 tcgacctggt ctggacggtg ccctcggatg ccgccagccg cggcggggcg gccagccagt
      241 ggctggtcgg ttgccacatt cccgggcact gggcgaaagg catgcaggtc cccgtccgct
      301 gggtcaccgg cagcacgccg tgacgctccc cggtggtacg ctctgcctcc cgcgccggtg
      361 aggcgacggc ggtgagcctc gaggaggatc tggatgacct atgtgatcgc ggagccatgc
      421 atcgacgtgc tcgaccttgc atgcgtctcc gtctgcccgg tcgactgcat ccactatgac
      481 gagggcacgg atcgcaagct gttcatcgat ccgaacgagt gcatcgactg tggcgcctgc
      541 gagccggagt gcccggtgaa cgccatcttc ccggaggagt cgctgccgcc ggagtgggcc
      601 aagttcaccg tgatggacgc gacctggtat accgacaagg ccgccgcccg cgccatggtc
      661 gacgaggcca aaccgagcta gtcgcgggcc ccgaccgcgg gcctgcggcg ccccggaccg
      721 gccggcccga ccgcccgcga tgcgcatcgt ctccctgctg ccgtcggcga ccgagatcgt
      781 ctacgccctc ggtctcggcg acgacctcgt cgccgtcacc cacgagtgcg actatccgcc
      841 cgaagccgcc ggcaagccgg tcgtcacgcg gagcgtccac gacctggccg ggacctcgtc
      901 ccgggagatc catcgcctcg tcagcgcggc ggtccacggc ggatcctccc tgtacgccct
      961 cgacgaagtc gccctcgccg agtcgcaccc ggacctgatc ctcacccagg agctgtgccg
     1021 cgtgtgcgcg gtcagctacc gcgaggtcaa cgaggtcgcc cgcgccatcg acgcggacat
     1081 caccgtcgtc tcgctcgagc ccacgtcgat cgagggcatc ctcaacacga tcacgacggt
     1141 cggcgcgatg accgaaaccg aggacacggc catcgatctc gtcgaatcgc tgcgcgagcg
     1201 gctcggggcg atcgagcagc tcgtccagtc gcgccgcgac ggcgggcagc gatcgccccg
     1261 ggtggtgggc ctcgagtggc tggacccgcc cttcgcggtg ggccactggg tgcccgagca
     1321 gatccgtcgc gccggaggct gggacctgct cggagccgac ggcgagccgt cgcgccagac
     1381 cggctgggac gcgatcgcgg aggtcgatcc cgagatgctc ctgctgatgc cctgcgggtt
     1441 ccacctggcc ggcaccgtgc gggcgtgggc cgagctcgcc cgcccgcccg agtaccgcga
     1501 gctcgccgcc gtccgccggg accaggtctt cgccgtggac ggctcggcct acttcagccg
     1561 gcccgggccg cgggtcatcg acggcatcga gctcctggcc gagatcttcg atccggaggc
     1621 gttcgtcgac gtgtcgccgc ccggttcctg gacgccggtg gagccgtagc cgccggatgc
     1681 cgttccgcgc gacgttcgac tgcctgtggt gcggcaaccc gcacgcctgc cgggggaccg
     1741 acgacctcga gggctgggcg cagctctgtc cgacctgcat cgggaaggcc ggcgacaacg
     1801 ggttcctgcg cttccggctg caccaggcgc tgaccgaacg cggggcggcg tcgggcgcgc
     1861 cggcggccgc gacagcgtcg ggcgcgccgg ccggcgggac ggcggcgacg acgccggccg
     1921 tcaccgtcga gccgcgaacc gaccgcgacg ccgagatgct cgcctactac gaggcccgcg
     1981 cgcccgagta cgacgactgg tacctgcgcc gtgggcgctt cgcgcgcggc ccgatccacg
     2041 atgccgcctg gaacgcggag ctcgacgccg cggggcgctg gctcgacggg ctgccgatcc
     2101 ggggcgagat cgtggagctg gccgccggca ccggctggtg gtcgccgctc ctcgcgtcca
     2161 agggcgagct ctcgctctac gacggcgcgg cggcaccgct cgaccgcgcc cgcgagcgcc
     2221 tcgtcgcgca tgggctccgg gcgcacctcc acgtccgcga cgcctgggcg gaacccgacc
     2281 gaccggtcga cgcggtgttc gccggcttct ggctgagcca cgtgccgcgc gatcggctcg
     2341 acgccttcct cggcctggtc cggcggtggc tcgcaccggg cggcctcttc gcgttcatcg
     2401 actcgaggtt cgacccgcaa tcgagcgccg tggaccaccc gacgccggcc ggcgacacgt
     2461 ccgtgcggcg ccttgacgac ggccgcgagt tcaccgtggt caaggtctat tacgagcctg
     2521 ccgagctcga ggctgccctg gcccgcgccg ggttcgagtc ggcccaggtc acgagcacgg
     2581 gacggttctt cctgaccggc gtcgcccacg tgagccggtg accccagaac gcggtcaggg
     2641 cgcggctata ctccgcccga tgtcccccct ggcgaactcc acgatcgcga ccgtgggctc
     2701 cggcgtgatg gccgaggcga tgatcgcggg catcctccgc ggcaagctcg tggacccggg
     2761 ccaggtcgtg gccagccacc cgcgaccgga gcggcgcgag cacctcgcgc gcgagtacgg
     2821 catccggacg gtcgcgagca acgtggaggc cgtcgaggcc gcggacgtcg tcatcttcgg
     2881 gatcaagccg cagatgctcg gcaaggtcgg tcgcgagatc gggccgcgcc tccatcgcgg
     2941 gcagctcgtc ctgagcgtcc tggccggcgc cacgacggcc gccctcaccg ggatcctggg
     3001 ccatgaccag gtcgtccgaa gcatgccgaa cacgccggcg cgtctcggca agggcatgac
     3061 cgtctggtac gccacccccg agtgcaccga cggacaacgc gcccaggcgg ccgccctgct
     3121 gggcgcgctc ggccaccaga tcgaagccga cgacgagaag atggtggcca tggccacggc
     3181 ggtgtccggc accggcccga cgtacgtctt cctggtcatg gaggcgctga tcgacgccgc
     3241 ggtccacctc gggttcccgc gccacatcgc ccacgacctc gtgatcgaga ccctggaggg
     3301 ctcgacgctc tttgccaagc agtcggggat gcacccggcg gagctgcgca acatggtgac
     3361 ctcgcccggc gggacctccg cggccgcgct gcacgagctc gagtccgggc gtctccggac
     3421 cgtgctgtcc gaggccgtct gggccgccta ccggcgcacc gtcgagctcg gcgaccagct
     3481 cgaggccagc gtcacggcgt cgggcgatcc gcgacccggc gcccggtgac gacgcgaccg
     3541 atgccttgtc cggcggagat gcctcgtccc gcccgggtgg ccgcgcgctg atggccggca
     3601 cccaggcgcc caatgccgcc gccacgatcc tcccggtcga ggcgctggtg gcggtcgaca
     3661 gcccacgcga gttccggctg catccgcgtg accggctggt cgcctacacc gccgaggccg
     3721 cgggcacgcg ccagctcttc agcctgtccc tgcgcggcgg ctatccgacc cagctgagcg
     3781 cctcggagaa gccgatctcc gacccgcaat ggtcgcccga cgggcggcgg atcgcctatc
     3841 accgcgacga cgaggtgtgg gtcatggagg ccgacgggtc gcgcctgacc cgggtcgtgg
     3901 cgaagccggg tggcggccgg caggcccgct ggtcccccga cgggcgccgg ctggcgttca
     3961 tctcgcgccg tcgcggctgg tcccagatct ggttgatcga cgcacccgtc ccgcgccgcg
     4021 gccgtcccgc gaccgatccc aagccaccgg agccggccgt cctgaccgag gccgggatcg
     4081 acgtcgagga atacgagtgg tcgccggacg ggtcggccat cgcggtgatg gcccagcgtg
     4141 acccggagcc g
//
LOCUS       DATDDI010000958         1778 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_478422, whole genome shotgun sequence.
ACCESSION   DATDDI010000958 DATDDI010000000
VERSION     DATDDI010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478422"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..737
                     /locus_tag="VIU37_14035"
     CDS             <1..737
                     /locus_tag="VIU37_14035"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEY6015129.1"
                     /translation="DLSQDRAQLDSTASTLHVALLQRASAQPGLHVFALGSLRVERGD
                     ERITRWGGEKAGSRQAQALFAFLFDRGERGVAKDEALELIWPDTEFERADLAFHRTLG
                     GLRHTLEPSGRGGRQLIRFYNDRYRLDPGVIDWSDVSAFLSRLDQARATSDREEARRL
                     LEAARALYRGDYLDDCPFYGDSAHVEDRRQALRGRCVDLLLALGESYESSGDRASAAA
                     AYRDALAMTDDCPPAEAGLRRLAHLT"
     gene            complement(1063..1138)
                     /locus_tag="VIU37_14040"
     tRNA            complement(1063..1138)
                     /locus_tag="VIU37_14040"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1103..1105),aa:Ala,seq:cgc)
     gene            complement(1244..>1778)
                     /locus_tag="VIU37_14045"
     CDS             complement(1244..>1778)
                     /locus_tag="VIU37_14045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY6015130.1"
                     /translation="VHEYLAAELRERLRQVFPEVRVRGLFGTPTLYETEIRRVDAARQ
                     RIRRKQEAARRTEGREAEARARAARRAGGARIRPSRPLPFRVARRLLPASVRGWLRSM
                     VASRPGVGPRSSATATAPAPAPAVVPPPAVERPPEMTMDQFLEFSVADLFYADTDLDR
                     AMDLLAICRIGDDAGPA"
BASE COUNT          241 a          634 c          662 g          241 t
ORIGIN      
        1 acgacctgtc gcaggatcga gcccagctcg actcgacggc ctcgaccctc cacgtggcgc
       61 tgctgcagcg ggcctccgcc cagcccggcc tgcacgtgtt tgccctcgga tcgctccggg
      121 tggagcgtgg cgacgagcgg atcacgcgtt ggggtggaga gaaggcaggc agccgacagg
      181 cgcaggccct gttcgccttc ctgttcgacc gcggcgaacg tggggtggcc aaggacgagg
      241 cgctcgagct gatctggccg gacaccgagt tcgagcgggc ggacctcgcc ttccatcgga
      301 ccctgggtgg gctgcggcac acgctcgaac ccagcggccg cggcgggcgt cagctgatcc
      361 gcttctacaa cgaccgctac cgcctcgatc cgggcgtcat cgactggtcg gacgtgtcgg
      421 cgttcctgtc caggctcgat caggcacgcg cgacgagcga ccgcgaggag gcgcgccggc
      481 tgctcgaggc cgcgcgcgcc ctgtatcgag gtgactacct cgacgactgc ccgttctacg
      541 gcgacagcgc ccatgtcgag gatcggcgcc aggcgctacg aggtcgctgc gtggacctgc
      601 tgctcgcgct cggcgagagc tacgagagct cgggcgaccg ggcgtccgcc gccgcggcgt
      661 accgcgacgc gctggccatg acggacgatt gcccgcctgc cgaggcgggg ctgcggaggc
      721 tggcgcacct gacctgaccc gagcgcggtc cggttcgatc cggcggcgtc ggccaacggg
      781 ccgccgaccg cagtctgacc gcaggggcga tggtgcatgg tgtgcctgca tccgatggtg
      841 gtcgcatcag ttcggtcctg atctggggtc gggacctcgg cgaccatcgg tgccggtttc
      901 aggagttcgc gggagtgccc gttccgcgaa ctcacgggga cgccggcagg tcgcgcgaca
      961 tgaggggagt cgcgcggccg gccggaccgc cgatcgccgt cgcgcgacca gaggggagtc
     1021 gcgcggcggc ctccaccgca cttcgacggc atttcgggga gttggtggag atgaggggac
     1081 tcgaacccct gacccccgcg atgcgaacgc ggtgctcttc cagctgagct acatccccac
     1141 ggggtcgacg gtcgcgcgga gggcgccaag ggccctgcgg ctgcggccgt gcggctgcga
     1201 cggtcgcaga gtgtagcacg cacccgccgg aggtcccggc gcgtcaggcc ggcccggcgt
     1261 cgtcgccgat gcggcagatc gccaggagat ccatcgcccg atcgaggtcg gtgtccgcgt
     1321 agaacaggtc cgccacggag aactcgagga actggtccat cgtcatctcg ggtggccgtt
     1381 ctaccgccgg cggcgggacg acggccggcg ctggcgccgg cgcggtggcg gtcgcactcg
     1441 accgcggtcc gacacccggc cgcgacgcca ccatcgaccg gagccagccg cgcaccgacg
     1501 cgggcagcag tcgccgggcg acgcggaatg gcagtggacg cgacggccga atccgcgcgc
     1561 cacccgcccg gcgggccgcc ctggcgcgtg cctccgcctc gcggccctcg gttcgccggg
     1621 cggcctcctg cttccggcgg atccgctgac gggccgcgtc gacgcgacgg atctccgtct
     1681 cgtacagggt cggcgtcccg aacagccccc ggacgcggac ctccggaaac acctggcgca
     1741 agcgctcgcg gagctcggcc gccaggtact cgtggacg
//
LOCUS       DATDDI010000959         2239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_582686, whole genome shotgun sequence.
ACCESSION   DATDDI010000959 DATDDI010000000
VERSION     DATDDI010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582686"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VIU37_14050"
     CDS             <1..408
                     /locus_tag="VIU37_14050"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEY6015131.1"
                     /translation="YDHQVIRTVRTEYRAPSVIRLQHLIRRPRPRVKLSRREVFARDR
                     HTCQYCGRQSHDLTLDHVMPRHRGGSHTWENLVAACKPCNHRKGGKTLEEARLHLARQ
                     PFEPRSDIYSLFTPYLGDDRNEAWRTYLFLGRN"
     gene            486..1757
                     /locus_tag="VIU37_14055"
     CDS             486..1757
                     /locus_tag="VIU37_14055"
                     /inference="COORDINATES: protein motif:HMM:NF025112.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY6015132.1"
                     /translation="MVGGSLRDVLLGRPPADWDLATDALPERLLELFPEAAYENRFGT
                     VAVPRGGELYEVTTFRSDHDYADFRRPHRVEFTGSIELDLARRDFTVNAMAWGAPAGA
                     KASLVDPYAGRADVEARLLRAVGEPPARFEEDALRMVRAVRLAATLGFGIEPATLAGI
                     RARSNLVAHLSGERIATELDRLLAAPVPSVGLRLMSDTELLEAVSPELAAQRGIPQNK
                     VPDEDLWDHTLRSVDAAPPDRPIVRLAALLHDIGKPATFADGHFLGHEVVGARLAGAF
                     LDRLRAPRAVRDRVVELVRNHMFSYESSWSDAAVRRFIAKIGGLGDGALAELLALREA
                     DNAGSGLPAGAGLSELKARIDVELAAEAVLDRRGLAVDGTDLMGELGLPQGPILGRIL
                     EALLERVIADPVLNDRPTLLLLARSMVPDAS"
     gene            1754..2194
                     /locus_tag="VIU37_14060"
     CDS             1754..2194
                     /locus_tag="VIU37_14060"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY6015133.1"
                     /translation="MIELLLQAEGALSVGLLDRAEALYRQVIAADPRNSIAVVGLARV
                     TLERSDEVGALTFARRALAIDPENNAAQRMVQRLEEVLQNRGVSVAPATAPDVRAGDG
                     ADEGVGDGGVPDRPAPADPGGPAPTAEPGRRSYLDRLLRRRGRP"
BASE COUNT          299 a          829 c          806 g          305 t
ORIGIN      
        1 tacgaccacc aggtgatccg gacggtgcgg accgagtacc gtgcgccctc cgtgatccgg
       61 ctccagcacc tcatccgacg gccgcggcca cgggtcaagc tgtcccgtcg cgaggtgttc
      121 gcgcgggacc ggcacacctg ccagtactgc gggcgccagt cgcacgacct gaccctcgac
      181 cacgtgatgc cgcggcaccg cggcggcagc cacacctggg agaacctcgt cgccgcctgc
      241 aagccgtgca accatcgcaa gggcggcaag acgctcgaag aggcacgcct gcacctggcc
      301 cgccagccgt tcgaaccgcg cagcgacatc tactcgctgt tcacgccgta cctcggcgac
      361 gaccgcaacg aagcctggcg gacctacctc ttcctggggc gcaactgacg tcgatcgagg
      421 aagccatccc cgccccggtc accgagctcc tcgagacgct ctgggcggcg gggcaggccg
      481 gctacgtggt cggtggctcg ctgcgcgacg tgctgctcgg ccggccgccg gccgactggg
      541 acctggccac cgacgcgctg cccgagcggc tcctggagct cttcccggag gccgcttacg
      601 agaaccgctt cgggacggtg gcggtacccc gtggcgggga gctctacgag gtcacgacct
      661 tccggagcga ccacgactac gccgacttcc ggcgaccgca tcgggtcgaa ttcaccggca
      721 gcatcgagct cgatctcgca cgtcgggact tcaccgtgaa cgcgatggcc tggggcgcgc
      781 cggcgggcgc caaggcctcc ctggtcgacc cctacgcggg gcgcgccgac gtcgaggccc
      841 ggctcctgcg ggccgtcggc gagccgccgg cccggttcga ggaggacgcc ctccggatgg
      901 tgcgcgcggt ccggctcgcg gcgacgctcg gcttcgggat cgagccggcg acactggccg
      961 gcatccgggc gcgctcgaac ctggtggcgc acctgtccgg cgagcggatc gcgaccgagc
     1021 tcgatcgact cctggcggcg ccggtgccgt cggtcgggct ccgcctgatg agcgacacgg
     1081 agctgctcga ggcggtctcg cccgagctgg cggcgcagcg cggcatcccc cagaacaagg
     1141 tcccggacga ggacctctgg gaccacaccc tgcgatccgt ggatgccgca ccgccggacc
     1201 gcccgatcgt gcggctggcg gcgctcctcc acgacatcgg caagccggcg acgttcgccg
     1261 acggccactt ccttggccac gaggtggtcg gcgcgcggct ggccggcgcg ttcctcgacc
     1321 ggttgcgcgc accgcgcgcg gtccgggacc gggtggtcga gctcgtccgc aaccacatgt
     1381 tcagctacga gtcgagctgg tccgacgctg cggtccggcg cttcatcgcg aagatcggag
     1441 ggctcggtga cggcgccctc gccgagctgc tcgcgctccg cgaagccgac aacgccggct
     1501 cgggactgcc ggccggcgcc ggcctgagcg agctcaaggc gcggatcgac gtggagctgg
     1561 cggcggaggc ggtcctcgat cggcgcgggc tggccgtgga cggcaccgac ctgatgggcg
     1621 agctggggct gccgcagggc ccgatcctgg ggcgaatcct cgaggcgctc ctcgagcggg
     1681 tcatcgccga ccccgtcctc aacgaccggc cgacgctgct gctcctcgcc cggtcgatgg
     1741 tcccggacgc atcgtgatcg aactgctgct ccaggcggaa ggggcgctgt cggtcgggct
     1801 gctcgatcgg gcggaggccc tctaccgcca ggtgatcgcg gccgacccgc gcaactcgat
     1861 cgcggtcgtg ggcctcgcgc gcgtcacgct cgagcgctcg gacgaggtgg gcgcgctgac
     1921 cttcgcgcgt cgcgcgctgg cgatcgaccc ggagaacaac gccgcccagc ggatggtcca
     1981 gcggctcgag gaggtcctcc agaatcgggg cgtttcggtc gcgcccgcga cggctccgga
     2041 cgtgcgtgcc ggggacgggg cggacgaggg cgtcggcgat ggcggggtac ccgatcgtcc
     2101 ggctcccgcc gatcccggtg ggccggctcc caccgcggag cccgggcggc gctcctacct
     2161 cgatcgcctg ctccgtcgtc gcggccgacc gtgacccggc gcaacccgta tcgttctcgg
     2221 acatgacacg aatcctgat
//
LOCUS       DATDDI010000960         2790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Limnocylindrales bacterium isolate
            SMAG_U170 k141_478641, whole genome shotgun sequence.
ACCESSION   DATDDI010000960 DATDDI010000000
VERSION     DATDDI010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962373
            Sequence Read Archive: DRR101462
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Limnocylindrales bacterium (soil metagenome)
  ORGANISM  Candidatus Limnocylindrales bacterium
            Bacteria; Chloroflexota; Candidatus Limnocylindria; Candidatus
            Limnocylindrales.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 19:12:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,814
            CDSs (total)                      :: 2,800
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 14
            tRNAs                             :: 13
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 4 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Candidatus Limnocylindrales bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478641"
                     /isolate="SMAG_U170"
                     /isolation_source="soil"
                     /db_xref="taxon:2952938"
                     /environmental_sample
                     /country="China"
                     /lat_lon="32.479787 N 119.136439 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            490..1749
                     /locus_tag="VIU37_14065"
     CDS             490..1749
                     /locus_tag="VIU37_14065"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY6015134.1"
                     /translation="MPDSRAVAAGAVPSGARPSQDWRVVVAIFWITSLVEGMGVSTVF
                     AQLPTYLRQMGVESTDRLAFVGLFNALIFVVGAPLVPFWGAWADKYSRKVVIVRSAVV
                     EAVVFVAVALSREPWQLALSMLLIGFQLGNTGVMLAGIRDVTPRARLGTTIAVFGASG
                     PIGFAAGPVLAGILIDGFGLSLPGVFAAAAVLSLATAALVTFGSREIRPEVVPTARVA
                     TLALGAMRGVLTDPAVRRVFLIFGVSYLASQMTRPYIPVLVEGLSGTGPGLASSIGLV
                     AGTAALVGAVGSPLGGVLGDRIGFRPVLIAALAGAGLALLVMPLAPSVASMAIVAVVL
                     GTATATVTAMIFGLLAVEVPAERRSATLNLVYLPLYAAGILGPATAAGVAAIAGATGP
                     FGVGGAILLVAAVVIALGRSRSGTQPA"
     gene            complement(1768..2670)
                     /locus_tag="VIU37_14070"
     CDS             complement(1768..2670)
                     /locus_tag="VIU37_14070"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HEY6015135.1"
                     /translation="MTGRSQPALARVRSPWLALERTAENLADLGVVLAGTLWFVVVFL
                     AMPFGRVWQTGQEAFCYWIANLNSPYSLSNWGSPIAYVYSPAFLQAMLPLTHLPWMLF
                     MTIWTGVLIAAVRYLTGPRLFAAGILLATVEIAGGNISLLLAVAIVIGFRWPAAWSFI
                     LLTKVTPGIGLLWFVVRREWRQLGIALGATVLVIAASSIFMPRAWLEWFNLLTSLPGR
                     DGTWAAVPIPLVVRFPVAVAVVVWGARTNRRWAVPVAAMLALPALWYGSLTMLLGVIA
                     LRDPDRNEGSLQASSSTSTQRATA"
BASE COUNT          363 a          970 c         1019 g          438 t
ORIGIN      
        1 agcgatggtt gaagtccccg aacggccgcg cccagcggtc ctgtgcggcc atgattcgtg
       61 cgagccagcg agccatcccc acacctccgg ggagagtgta tccacacgtc gtccacagcc
      121 gtggcaagtt cggggataac ttcgtggcaa ttgcgcgaaa gttcgtggac aagcgccttg
      181 tggcggtcct gcccgggccg tagatttcgt cttgcccgaa ggggcagatg tgaaccgcca
      241 gaccggttcg aggagcgatc ctcgtctcgg tcccgggaac caggttcgga ggtcgcaagg
      301 cccccgagcg agggacccgg cggcgaccag ggaccttggc ttgctgaagc ccctggaccc
      361 gccgaacggc cggtgcctca tcagttcctt cgggcgcttt cgtgtccgcc gcgcgcctcg
      421 acgcgcgacc gccgcccggc gcgtccgggc gcggcgccgg cacccgtccc atcggctagg
      481 cttccgcgga tgcccgattc ccgcgcggtc gccgctggcg ccgtcccgtc cggtgcccgc
      541 ccgtcgcagg attggcgggt cgtcgtggcg atcttctgga tcacctccct ggtcgagggc
      601 atgggcgtca gcaccgtctt cgcccagctc ccgacatacc tgcgccagat gggcgtcgaa
      661 tcaaccgacc ggctcgcgtt cgtcggcctg ttcaacgccc tgatcttcgt cgtgggcgct
      721 ccgctcgtcc cgttctgggg ggcgtgggcc gacaagtaca gccgcaaggt cgtcatcgtc
      781 cgcagcgcgg tcgtggaggc ggtcgtcttc gtggccgtgg ccctgtcccg ggaaccgtgg
      841 cagcttgccc tgtcgatgct gctgatcggg ttccagctcg ggaacacggg ggtgatgctg
      901 gccggcatcc gggacgtcac gccgagggcc cggctgggca cgacgatcgc ggtcttcggc
      961 gcgtccgggc cgatcgggtt cgcggccggc cccgtgctgg ccgggatcct gatcgacggg
     1021 ttcggcctct cgctgccggg cgtctttgcc gcggcggccg tcctgtcgct ggcgaccgcg
     1081 gcactcgtga cgttcggctc gcgcgagatc cgtcccgagg tcgtgccgac cgcccgggtg
     1141 gccacgctgg ccctcggcgc catgcgcggc gtcctgaccg acccggccgt gcggcgggtc
     1201 ttcctgatct tcggcgtctc ctacctcgcg agccagatga ctcgcccgta catcccggtc
     1261 ctcgtggaag ggctgagcgg gaccggaccc ggcctggcgt cttcgatcgg cctggttgcc
     1321 gggacggcgg cgctcgtggg tgcggtcggg tctcccctgg gtggtgtgct cggcgatcgg
     1381 atcggcttcc ggccggtgct catcgccgcg ctcgccggtg cgggcctcgc cctgctggtc
     1441 atgccgctcg ccccgtcggt cgcgtcgatg gcgatcgtcg ccgtggtcct cgggacggcg
     1501 acggcgacgg tgaccgcgat gatcttcggg ttgctcgccg tcgaggtccc ggcggagcgt
     1561 cggtcggcga ccctcaacct cgtctacctg ccgctctacg cggcggggat cctgggaccg
     1621 gccaccgccg ccggggtggc ggccatcgcc ggcgccacgg gtccgttcgg cgtgggcggc
     1681 gcgatcctgc tggtggccgc cgtggtcatc gcgctcgggc gatcgcgctc gggaacgcag
     1741 cccgcgtagg gcccacaggc tgggcggtca ggccgtggcc ctctgcgtcg atgtcgagga
     1801 cgacgcctgg agcgacccct cgtttcgatc ggggtcgcgc agcgcgatca ctccgagcag
     1861 catcgtcagg ctgccgtacc acagcgccgg cagcgccagc atggcggcga ccgggaccgc
     1921 ccagcgacgg ttcgtccggg caccccagac gacgaccgcg acggccaccg ggaagcggac
     1981 cacgagcggg atcggcaccg ccgcccacgt gccgtcccgt ccggggagcg aggtcagcag
     2041 gttgaaccac tcgagccagg ctcgtggcat gaagatcgac gaggctgcga tcacgagcac
     2101 ggtggctccg agcgcgatcc cgagctggcg ccactcgcga cggacgacga accagaggag
     2161 cccgatcccg ggcgtgacct tggtgaggag gatgaacgac caggcggccg gccagcggaa
     2221 gccgatgacg atcgcgaccg cgaggagcag cgagatgttg cccccggcga tttcgacggt
     2281 cgccagcagg atcccggccg cgaacagcct gggacccgtc aggtatcgaa cggcggcgat
     2341 gagcaccccc gtccagatgg tcatgaacag catccacggc aggtgggtga gggggagcat
     2401 ggcctgcagg aacgccggcg agtagacgta cgcgatcggc gagccccagt tggacagcga
     2461 gtagggcgag ttgaggttgg cgatccagta gcagaacgcc tcctggcccg tctgccacac
     2521 ccgcccgaag ggcatggcca ggaacacgac gacgaaccac agcgttccgg cgaggacgac
     2581 gccgagatcc gccaggttct cggcggtccg ttcgagcgcg agccagggcg agcggacgcg
     2641 cgcgagggca ggctggcttc ggccggtcat ggtgtcgtgc aggttgcgct ggctgtgttc
     2701 atttcgctcc ccccggcgtg tcggtggtct ccgccgtgcg ggccgggcgc cgttcgaccc
     2761 gtgtccgcgt gcgggccagg cacgctcgcg
//
